Query 013951
Match_columns 433
No_of_seqs 126 out of 1366
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 2.2E-61 4.7E-66 463.3 39.5 422 6-427 7-443 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 8.6E-61 1.9E-65 464.5 39.0 420 6-429 4-441 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.1E-60 2.3E-65 459.6 37.5 417 5-431 7-437 (477)
4 PLN02670 transferase, transfer 100.0 2.1E-60 4.5E-65 454.3 35.9 414 4-429 3-430 (472)
5 PLN02208 glycosyltransferase f 100.0 4.8E-60 1E-64 450.8 36.5 394 6-429 3-402 (442)
6 PLN00414 glycosyltransferase f 100.0 7.7E-59 1.7E-63 443.1 37.0 395 6-429 3-403 (446)
7 PLN02764 glycosyltransferase f 100.0 9.3E-59 2E-63 439.4 36.7 395 6-429 4-408 (453)
8 PLN02992 coniferyl-alcohol glu 100.0 1E-58 2.2E-63 443.0 36.1 396 7-429 5-428 (481)
9 PLN03004 UDP-glycosyltransfera 100.0 1.1E-58 2.4E-63 440.7 33.8 407 7-432 3-428 (451)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 9.5E-58 2.1E-62 436.2 36.8 396 1-429 1-411 (451)
11 PLN02555 limonoid glucosyltran 100.0 3.4E-57 7.3E-62 433.8 36.9 410 1-429 1-430 (480)
12 PLN02562 UDP-glycosyltransfera 100.0 2.6E-57 5.7E-62 434.6 35.8 394 7-432 6-417 (448)
13 PLN00164 glucosyltransferase; 100.0 4.4E-57 9.5E-62 436.2 36.7 402 5-429 1-432 (480)
14 PLN02210 UDP-glucosyl transfer 100.0 7.6E-57 1.7E-61 431.8 37.5 397 5-430 6-417 (456)
15 PLN02207 UDP-glycosyltransfera 100.0 5.4E-57 1.2E-61 430.4 36.0 401 6-427 2-425 (468)
16 PLN02173 UDP-glucosyl transfer 100.0 7.8E-57 1.7E-61 427.8 35.7 389 6-430 4-410 (449)
17 PLN03015 UDP-glucosyl transfer 100.0 2.8E-56 6.1E-61 423.7 36.2 396 7-427 3-425 (470)
18 PLN02554 UDP-glycosyltransfera 100.0 9.1E-56 2E-60 428.8 35.3 404 7-432 2-445 (481)
19 PLN02448 UDP-glycosyltransfera 100.0 3.5E-55 7.5E-60 423.3 36.4 395 3-429 6-416 (459)
20 PLN02152 indole-3-acetate beta 100.0 2.9E-55 6.3E-60 417.8 35.1 396 6-430 2-419 (455)
21 PLN02167 UDP-glycosyltransfera 100.0 5.6E-55 1.2E-59 422.6 34.8 408 6-429 2-435 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.7E-50 1.4E-54 388.8 23.5 377 7-432 20-436 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.6E-50 3.6E-55 400.3 -0.6 366 9-432 2-413 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.3E-42 2.9E-47 333.3 22.7 348 14-431 2-362 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.2E-42 4.7E-47 333.5 19.6 355 8-431 1-375 (401)
26 COG1819 Glycosyl transferases, 100.0 1E-40 2.2E-45 316.2 16.4 364 7-432 1-372 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.8E-41 1E-45 333.0 9.2 387 7-432 5-426 (496)
28 PRK12446 undecaprenyldiphospho 99.9 4.8E-26 1E-30 213.3 20.7 313 8-429 2-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 9.8E-26 2.1E-30 210.6 22.6 305 8-425 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.6E-23 3.4E-28 195.2 23.4 305 9-432 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 4.8E-22 1E-26 184.0 21.8 312 8-429 1-325 (357)
32 PRK00726 murG undecaprenyldiph 99.8 1.4E-17 2.9E-22 158.3 24.7 315 8-431 2-327 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9E-17 2E-21 152.3 24.9 317 9-430 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 4.4E-15 9.5E-20 140.6 24.3 311 9-430 2-323 (348)
35 TIGR03590 PseG pseudaminic aci 99.7 4.6E-15 1E-19 134.8 23.2 104 281-397 171-278 (279)
36 COG4671 Predicted glycosyl tra 99.7 3.7E-15 8E-20 131.7 17.8 339 6-429 8-366 (400)
37 TIGR00215 lpxB lipid-A-disacch 99.6 3.3E-15 7.2E-20 142.3 16.0 319 8-429 6-348 (385)
38 PRK13609 diacylglycerol glucos 99.6 2.6E-14 5.6E-19 136.9 19.8 135 279-430 201-340 (380)
39 PF04101 Glyco_tran_28_C: Glyc 99.6 1.4E-16 3E-21 134.0 -1.7 138 282-430 1-146 (167)
40 PRK13608 diacylglycerol glucos 99.5 2.6E-13 5.6E-18 130.1 14.6 135 279-430 201-340 (391)
41 PRK00025 lpxB lipid-A-disaccha 99.5 6E-13 1.3E-17 127.6 16.0 317 8-431 2-344 (380)
42 PF03033 Glyco_transf_28: Glyc 99.4 1.6E-13 3.4E-18 111.7 3.4 126 10-151 1-134 (139)
43 PLN02605 monogalactosyldiacylg 99.4 1E-11 2.2E-16 118.9 13.9 133 278-428 204-347 (382)
44 COG3980 spsG Spore coat polysa 99.3 1.8E-10 3.9E-15 99.3 17.2 285 8-430 1-295 (318)
45 PLN02871 UDP-sulfoquinovose:DA 99.3 5.8E-09 1.2E-13 102.7 27.8 129 282-430 264-402 (465)
46 TIGR03492 conserved hypothetic 99.2 1.2E-09 2.6E-14 104.4 19.8 143 280-430 205-366 (396)
47 cd03814 GT1_like_2 This family 99.2 1.3E-08 2.9E-13 96.5 25.5 128 282-431 198-335 (364)
48 cd03823 GT1_ExpE7_like This fa 99.1 2.5E-08 5.4E-13 94.3 23.6 130 281-430 191-331 (359)
49 cd03817 GT1_UGDG_like This fam 99.1 8E-08 1.7E-12 91.2 24.6 82 339-430 257-345 (374)
50 cd03816 GT1_ALG1_like This fam 99.1 1.4E-07 3E-12 91.4 25.8 77 341-428 294-381 (415)
51 cd03794 GT1_wbuB_like This fam 99.0 7.6E-08 1.7E-12 91.9 23.3 133 280-430 219-367 (394)
52 cd03800 GT1_Sucrose_synthase T 99.0 1.1E-07 2.4E-12 91.6 23.6 82 340-430 282-370 (398)
53 cd03801 GT1_YqgM_like This fam 99.0 2.8E-07 6.1E-12 87.0 26.0 314 18-430 14-343 (374)
54 cd03818 GT1_ExpC_like This fam 99.0 3.7E-07 7.9E-12 88.1 26.2 84 340-430 280-368 (396)
55 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 6.2E-07 1.3E-11 85.4 25.5 135 280-431 198-340 (363)
56 cd03808 GT1_cap1E_like This fa 98.9 3.9E-07 8.4E-12 85.9 23.8 314 9-430 1-331 (359)
57 TIGR00236 wecB UDP-N-acetylglu 98.9 3.2E-07 6.9E-12 87.5 22.8 320 9-430 2-336 (365)
58 cd04962 GT1_like_5 This family 98.9 5.4E-07 1.2E-11 86.0 22.4 132 282-430 198-338 (371)
59 cd03798 GT1_wlbH_like This fam 98.9 2.4E-06 5.2E-11 80.9 26.4 317 17-430 13-346 (377)
60 cd03820 GT1_amsD_like This fam 98.8 1.3E-06 2.7E-11 81.9 23.4 83 340-431 234-322 (348)
61 PF04007 DUF354: Protein of un 98.8 2.4E-06 5.2E-11 78.8 24.2 277 16-404 8-290 (335)
62 cd03799 GT1_amsK_like This is 98.8 2.7E-06 5.9E-11 80.5 25.6 83 339-430 234-329 (355)
63 TIGR03449 mycothiol_MshA UDP-N 98.8 3.9E-06 8.5E-11 81.2 25.3 82 340-430 282-370 (405)
64 cd03795 GT1_like_4 This family 98.8 2.2E-06 4.8E-11 81.2 23.1 135 282-431 192-335 (357)
65 cd03825 GT1_wcfI_like This fam 98.8 1.9E-06 4.1E-11 81.9 22.4 82 340-430 243-332 (365)
66 cd03821 GT1_Bme6_like This fam 98.7 6.7E-06 1.5E-10 77.9 24.7 80 339-429 260-346 (375)
67 PRK05749 3-deoxy-D-manno-octul 98.7 3.7E-06 8E-11 81.9 23.1 83 342-431 303-391 (425)
68 cd03802 GT1_AviGT4_like This f 98.7 4E-06 8.7E-11 78.7 22.3 129 283-428 173-308 (335)
69 PRK10307 putative glycosyl tra 98.7 2.4E-05 5.1E-10 76.0 27.9 134 282-430 230-375 (412)
70 cd03796 GT1_PIG-A_like This fa 98.7 1.3E-05 2.8E-10 77.4 25.7 79 340-429 249-334 (398)
71 PLN02275 transferase, transfer 98.7 9.6E-05 2.1E-09 70.6 30.3 75 341-426 286-371 (371)
72 cd03805 GT1_ALG2_like This fam 98.7 1.9E-05 4.1E-10 76.0 25.8 82 339-430 278-366 (392)
73 cd03812 GT1_CapH_like This fam 98.6 9.9E-06 2.2E-10 76.8 22.8 84 339-432 247-335 (358)
74 cd03811 GT1_WabH_like This fam 98.6 5.4E-06 1.2E-10 77.7 20.9 133 281-430 189-334 (353)
75 PRK14089 ipid-A-disaccharide s 98.6 1.1E-06 2.4E-11 81.8 15.0 128 281-424 168-315 (347)
76 cd03822 GT1_ecORF704_like This 98.6 1.1E-05 2.4E-10 76.5 22.2 82 339-430 245-336 (366)
77 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 5.4E-06 1.2E-10 78.6 19.6 324 8-428 1-339 (365)
78 cd03819 GT1_WavL_like This fam 98.6 4.1E-05 8.8E-10 72.5 24.9 81 340-427 245-329 (355)
79 cd05844 GT1_like_7 Glycosyltra 98.6 2E-05 4.4E-10 75.0 22.5 82 340-430 244-338 (367)
80 cd03807 GT1_WbnK_like This fam 98.6 4.2E-05 9E-10 72.2 24.4 80 340-430 250-334 (365)
81 TIGR02472 sucr_P_syn_N sucrose 98.5 2.5E-05 5.4E-10 76.4 22.7 82 340-430 316-408 (439)
82 PRK09922 UDP-D-galactose:(gluc 98.5 1.5E-05 3.2E-10 75.9 19.4 136 282-430 181-326 (359)
83 cd04951 GT1_WbdM_like This fam 98.5 1.9E-05 4E-10 74.9 19.0 129 281-428 188-326 (360)
84 TIGR02468 sucrsPsyn_pln sucros 98.4 9.1E-05 2E-09 77.4 24.7 149 269-430 469-639 (1050)
85 KOG3349 Predicted glycosyltran 98.4 8.4E-07 1.8E-11 69.2 7.3 120 282-411 5-135 (170)
86 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00011 2.4E-09 68.3 22.3 312 11-430 52-388 (419)
87 TIGR03087 stp1 sugar transfera 98.4 4.3E-06 9.3E-11 80.7 13.6 81 339-430 278-364 (397)
88 TIGR02149 glgA_Coryne glycogen 98.4 0.00026 5.7E-09 68.0 25.5 138 282-430 202-354 (388)
89 cd04955 GT1_like_6 This family 98.3 0.00017 3.7E-09 68.4 22.5 126 284-429 196-331 (363)
90 TIGR03088 stp2 sugar transfera 98.3 8.7E-05 1.9E-09 71.0 19.7 82 340-430 254-340 (374)
91 PRK15179 Vi polysaccharide bio 98.3 0.0012 2.5E-08 67.5 28.0 132 282-427 518-658 (694)
92 PRK01021 lpxB lipid-A-disaccha 98.3 0.00011 2.4E-09 72.2 19.1 180 222-430 369-573 (608)
93 COG0381 WecB UDP-N-acetylgluco 98.2 0.00049 1.1E-08 63.5 21.8 326 5-430 1-343 (383)
94 PF02684 LpxB: Lipid-A-disacch 98.2 0.0001 2.2E-09 69.2 17.6 182 223-431 142-343 (373)
95 cd03792 GT1_Trehalose_phosphor 98.2 0.00061 1.3E-08 65.1 23.6 80 340-430 251-339 (372)
96 PLN02846 digalactosyldiacylgly 98.2 0.0009 1.9E-08 64.8 24.1 125 285-429 232-364 (462)
97 cd03806 GT1_ALG11_like This fa 98.2 0.00082 1.8E-08 65.2 23.8 81 339-429 303-393 (419)
98 cd03809 GT1_mtfB_like This fam 98.2 9.7E-05 2.1E-09 69.9 17.0 82 339-431 251-339 (365)
99 cd03804 GT1_wbaZ_like This fam 98.1 0.00021 4.6E-09 67.6 17.5 126 284-429 198-327 (351)
100 PLN02949 transferase, transfer 98.0 0.0028 6.1E-08 62.0 24.0 81 339-428 333-422 (463)
101 PRK15427 colanic acid biosynth 98.0 0.002 4.3E-08 62.3 22.7 134 281-430 222-373 (406)
102 TIGR02470 sucr_synth sucrose s 97.9 0.0089 1.9E-07 61.5 26.1 78 340-426 618-707 (784)
103 PF02350 Epimerase_2: UDP-N-ac 97.9 2.8E-05 6.1E-10 72.9 7.5 254 97-428 49-318 (346)
104 PRK00654 glgA glycogen synthas 97.8 0.006 1.3E-07 60.2 22.2 133 282-427 283-427 (466)
105 cd01635 Glycosyltransferase_GT 97.8 0.0056 1.2E-07 53.4 19.6 50 340-391 160-217 (229)
106 cd03791 GT1_Glycogen_synthase_ 97.8 0.0076 1.6E-07 59.7 22.0 84 340-428 350-442 (476)
107 COG0763 LpxB Lipid A disacchar 97.7 0.0034 7.5E-08 57.9 17.3 180 224-429 146-345 (381)
108 COG5017 Uncharacterized conser 97.7 0.00019 4.1E-09 55.2 7.7 127 283-426 2-140 (161)
109 cd04950 GT1_like_1 Glycosyltra 97.7 0.027 5.8E-07 53.9 24.4 79 340-429 253-341 (373)
110 PLN00142 sucrose synthase 97.7 0.0065 1.4E-07 62.5 20.4 81 340-429 641-737 (815)
111 TIGR02095 glgA glycogen/starch 97.6 0.014 3.1E-07 57.7 21.9 79 340-427 345-436 (473)
112 COG1817 Uncharacterized protei 97.5 0.039 8.5E-07 49.4 19.9 106 16-147 8-113 (346)
113 cd03813 GT1_like_3 This family 97.4 0.017 3.6E-07 57.2 18.8 83 339-430 352-444 (475)
114 PF00534 Glycos_transf_1: Glyc 97.4 0.00048 1E-08 57.8 6.6 135 280-430 14-160 (172)
115 cd04949 GT1_gtfA_like This fam 97.3 0.013 2.8E-07 55.9 16.3 86 339-430 259-347 (372)
116 cd04946 GT1_AmsK_like This fam 97.3 0.0017 3.6E-08 62.9 9.9 136 282-430 231-379 (407)
117 TIGR02918 accessory Sec system 97.2 0.069 1.5E-06 53.0 20.0 135 282-429 320-468 (500)
118 PLN02316 synthase/transferase 97.1 0.48 1E-05 50.6 25.9 85 340-428 899-998 (1036)
119 PF13692 Glyco_trans_1_4: Glyc 97.0 0.00078 1.7E-08 53.9 4.2 80 340-428 52-135 (135)
120 TIGR02193 heptsyl_trn_I lipopo 97.0 0.026 5.7E-07 52.6 14.8 133 280-426 179-319 (319)
121 PLN02501 digalactosyldiacylgly 96.9 0.068 1.5E-06 53.9 17.1 126 282-430 549-683 (794)
122 PF13844 Glyco_transf_41: Glyc 96.9 0.0066 1.4E-07 58.5 9.5 122 279-407 283-412 (468)
123 PF13477 Glyco_trans_4_2: Glyc 96.8 0.026 5.7E-07 45.3 11.2 102 9-145 1-106 (139)
124 PRK15484 lipopolysaccharide 1, 96.5 0.026 5.7E-07 54.0 10.7 83 340-430 256-346 (380)
125 PRK10125 putative glycosyl tra 96.2 0.74 1.6E-05 44.5 19.3 113 284-422 244-365 (405)
126 COG3914 Spy Predicted O-linked 96.1 0.043 9.4E-07 53.2 10.0 121 278-408 427-560 (620)
127 PRK10422 lipopolysaccharide co 96.1 1.4 2.9E-05 41.8 21.1 98 280-385 183-287 (352)
128 PF13579 Glyco_trans_4_4: Glyc 95.8 0.0091 2E-07 48.9 3.5 94 23-145 6-103 (160)
129 PF06722 DUF1205: Protein of u 95.8 0.014 3E-07 43.4 3.9 55 267-321 27-86 (97)
130 TIGR02201 heptsyl_trn_III lipo 95.7 0.89 1.9E-05 42.9 17.1 98 280-385 181-285 (344)
131 PF12000 Glyco_trans_4_3: Gkyc 95.3 0.28 6E-06 40.7 10.4 93 33-145 1-95 (171)
132 PRK10916 ADP-heptose:LPS hepto 95.0 3.2 6.9E-05 39.2 20.3 104 8-143 1-106 (348)
133 TIGR02195 heptsyl_trn_II lipop 94.4 4.5 9.8E-05 37.9 20.2 95 280-385 174-276 (334)
134 PF08660 Alg14: Oligosaccharid 94.3 0.77 1.7E-05 38.2 10.7 115 11-145 2-128 (170)
135 KOG4626 O-linked N-acetylgluco 93.9 0.21 4.6E-06 49.0 7.4 126 279-410 757-889 (966)
136 PF06258 Mito_fiss_Elm1: Mitoc 93.7 4.2 9.2E-05 37.6 15.4 120 281-409 147-281 (311)
137 PRK02261 methylaspartate mutas 93.6 0.36 7.9E-06 38.6 7.2 61 5-70 1-61 (137)
138 cd02067 B12-binding B12 bindin 93.4 1.6 3.4E-05 33.9 10.6 47 9-55 1-47 (119)
139 cd03789 GT1_LPS_heptosyltransf 93.3 6.3 0.00014 35.8 19.1 41 9-49 1-43 (279)
140 PRK15490 Vi polysaccharide bio 92.7 12 0.00026 37.5 25.1 66 339-411 453-523 (578)
141 PHA01633 putative glycosyl tra 92.7 0.72 1.6E-05 43.1 8.9 85 340-428 200-307 (335)
142 PF13439 Glyco_transf_4: Glyco 92.0 0.49 1.1E-05 39.1 6.4 101 17-149 11-112 (177)
143 PRK10017 colanic acid biosynth 91.4 0.99 2.2E-05 43.7 8.4 70 353-429 323-393 (426)
144 TIGR03713 acc_sec_asp1 accesso 90.4 1.1 2.5E-05 44.6 8.0 75 341-429 409-489 (519)
145 PRK09814 beta-1,6-galactofuran 89.7 0.4 8.7E-06 45.0 4.1 79 340-427 206-299 (333)
146 PF07429 Glyco_transf_56: 4-al 89.7 4.4 9.6E-05 37.5 10.4 83 339-426 243-331 (360)
147 PRK14098 glycogen synthase; Pr 88.3 2.2 4.7E-05 42.4 8.3 82 340-426 361-449 (489)
148 PRK13932 stationary phase surv 88.0 7.1 0.00015 34.8 10.4 42 5-48 3-44 (257)
149 PRK02797 4-alpha-L-fucosyltran 87.1 8.6 0.00019 35.1 10.4 81 339-424 204-290 (322)
150 PRK14099 glycogen synthase; Pr 86.9 9.8 0.00021 37.8 12.0 41 5-45 1-47 (485)
151 PF02310 B12-binding: B12 bind 86.2 4.1 8.9E-05 31.5 7.3 48 8-55 1-48 (121)
152 PF02441 Flavoprotein: Flavopr 85.1 1.3 2.9E-05 34.9 4.0 40 8-48 1-40 (129)
153 PRK12342 hypothetical protein; 84.9 15 0.00032 32.9 10.8 40 105-146 99-144 (254)
154 COG0496 SurE Predicted acid ph 84.8 3.3 7.2E-05 36.6 6.5 103 19-147 11-126 (252)
155 PF05159 Capsule_synth: Capsul 84.8 7.3 0.00016 35.2 9.2 44 341-387 183-226 (269)
156 cd02070 corrinoid_protein_B12- 84.5 4.2 9E-05 35.0 7.1 50 6-55 81-130 (201)
157 COG3660 Predicted nucleoside-d 83.8 31 0.00068 30.7 18.2 97 282-385 164-271 (329)
158 TIGR02370 pyl_corrinoid methyl 83.8 5.1 0.00011 34.3 7.3 60 6-70 83-142 (197)
159 cd01974 Nitrogenase_MoFe_beta 82.8 17 0.00036 35.6 11.3 98 6-145 302-402 (435)
160 PF02951 GSH-S_N: Prokaryotic 82.6 2.2 4.8E-05 33.0 4.1 38 8-45 1-41 (119)
161 PF08323 Glyco_transf_5: Starc 81.9 10 0.00022 33.8 8.7 24 22-45 20-43 (245)
162 PF00551 Formyl_trans_N: Formy 81.2 22 0.00047 29.9 10.1 107 8-147 1-110 (181)
163 COG0859 RfaF ADP-heptose:LPS h 81.1 49 0.0011 31.0 19.9 104 8-143 2-107 (334)
164 PRK05647 purN phosphoribosylgl 80.8 22 0.00047 30.5 10.0 105 8-145 2-109 (200)
165 PF01075 Glyco_transf_9: Glyco 80.7 8.2 0.00018 34.2 7.8 97 280-385 105-208 (247)
166 cd01965 Nitrogenase_MoFe_beta_ 80.6 17 0.00037 35.4 10.5 35 105-144 361-395 (428)
167 cd01980 Chlide_reductase_Y Chl 80.2 22 0.00048 34.5 11.1 31 109-144 344-374 (416)
168 COG0052 RpsB Ribosomal protein 80.1 28 0.00062 30.6 10.3 32 116-147 155-188 (252)
169 PRK10964 ADP-heptose:LPS hepto 80.1 7.9 0.00017 36.0 7.8 134 281-427 179-321 (322)
170 COG2185 Sbm Methylmalonyl-CoA 80.1 29 0.00063 27.8 10.3 42 6-47 11-52 (143)
171 COG0438 RfaG Glycosyltransfera 79.9 15 0.00033 33.5 9.8 81 340-429 256-343 (381)
172 cd03466 Nitrogenase_NifN_2 Nit 79.4 51 0.0011 32.2 13.3 35 105-144 362-396 (429)
173 PF02571 CbiJ: Precorrin-6x re 79.0 7 0.00015 34.8 6.6 38 105-144 56-99 (249)
174 TIGR00715 precor6x_red precorr 78.9 10 0.00023 33.9 7.7 37 106-144 56-98 (256)
175 PRK05973 replicative DNA helic 78.8 21 0.00046 31.5 9.4 45 9-53 66-110 (237)
176 PF01012 ETF: Electron transfe 78.7 9 0.0002 31.6 6.9 106 11-144 3-120 (164)
177 cd02071 MM_CoA_mut_B12_BD meth 78.4 9.6 0.00021 29.7 6.6 46 9-54 1-46 (122)
178 TIGR00639 PurN phosphoribosylg 78.3 41 0.00089 28.6 11.2 105 8-145 1-108 (190)
179 PRK13933 stationary phase surv 78.2 25 0.00054 31.4 9.8 26 22-48 14-39 (253)
180 PRK13934 stationary phase surv 77.9 37 0.00079 30.5 10.7 28 20-48 12-39 (266)
181 PF12146 Hydrolase_4: Putative 77.8 6.5 0.00014 27.9 5.0 36 7-42 15-50 (79)
182 PF04127 DFP: DNA / pantothena 77.7 1.7 3.7E-05 36.8 2.2 39 7-45 3-53 (185)
183 PHA01630 putative group 1 glyc 77.3 16 0.00035 34.2 8.9 76 347-428 196-294 (331)
184 cd02069 methionine_synthase_B1 77.0 10 0.00023 32.9 7.0 52 6-57 87-138 (213)
185 PF02142 MGS: MGS-like domain 75.7 2.7 6E-05 31.0 2.7 84 24-142 2-94 (95)
186 TIGR02919 accessory Sec system 75.2 31 0.00066 33.7 10.3 81 341-430 328-413 (438)
187 PHA02542 41 41 helicase; Provi 75.1 46 0.001 32.9 11.6 40 10-49 193-232 (473)
188 cd01424 MGS_CPS_II Methylglyox 74.6 32 0.00069 26.1 8.5 84 19-143 10-100 (110)
189 PRK03359 putative electron tra 74.5 58 0.0013 29.2 11.1 41 105-147 102-148 (256)
190 PRK08057 cobalt-precorrin-6x r 74.1 13 0.00029 33.0 7.0 90 8-144 3-98 (248)
191 cd01423 MGS_CPS_I_III Methylgl 73.8 37 0.0008 26.0 8.7 87 20-143 11-106 (116)
192 PRK08305 spoVFB dipicolinate s 73.8 4.9 0.00011 34.2 4.0 42 6-47 4-45 (196)
193 PF04413 Glycos_transf_N: 3-De 73.5 12 0.00026 31.7 6.3 100 8-146 22-126 (186)
194 PRK06321 replicative DNA helic 73.3 48 0.001 32.8 11.3 40 10-49 229-269 (472)
195 PF02585 PIG-L: GlcNAc-PI de-N 72.5 36 0.00077 26.5 8.6 23 101-125 86-108 (128)
196 cd01977 Nitrogenase_VFe_alpha 72.4 37 0.0008 33.0 10.3 34 106-144 349-382 (415)
197 smart00851 MGS MGS-like domain 72.2 29 0.00063 25.1 7.4 35 106-142 46-89 (90)
198 TIGR01501 MthylAspMutase methy 72.2 20 0.00042 28.5 6.8 47 8-54 2-48 (134)
199 PRK05595 replicative DNA helic 72.2 36 0.00077 33.4 10.2 41 10-50 204-245 (444)
200 PRK13935 stationary phase surv 71.4 45 0.00099 29.7 9.6 109 8-145 1-127 (253)
201 PRK01077 cobyrinic acid a,c-di 71.3 62 0.0013 31.8 11.6 37 8-44 4-41 (451)
202 KOG2941 Beta-1,4-mannosyltrans 71.2 91 0.002 29.2 11.5 127 6-151 11-142 (444)
203 PRK14478 nitrogenase molybdenu 71.1 50 0.0011 32.7 10.9 33 106-143 384-416 (475)
204 TIGR01283 nifE nitrogenase mol 70.4 84 0.0018 31.0 12.4 35 105-144 385-419 (456)
205 COG2230 Cfa Cyclopropane fatty 70.3 4.6 9.9E-05 36.5 3.2 60 366-426 80-142 (283)
206 TIGR01285 nifN nitrogenase mol 70.2 46 0.001 32.5 10.4 34 106-144 364-397 (432)
207 PF01975 SurE: Survival protei 70.1 8 0.00017 33.0 4.5 41 8-49 1-41 (196)
208 PF13524 Glyco_trans_1_2: Glyc 70.1 3.6 7.7E-05 30.0 2.1 55 366-430 9-64 (92)
209 PRK06067 flagellar accessory p 69.5 21 0.00047 31.3 7.4 44 9-52 27-70 (234)
210 cd01121 Sms Sms (bacterial rad 69.1 62 0.0014 30.8 10.7 42 10-51 85-126 (372)
211 COG1618 Predicted nucleotide k 69.0 12 0.00027 30.6 5.0 105 6-127 4-110 (179)
212 PRK08760 replicative DNA helic 68.4 32 0.0007 34.0 9.0 40 10-49 232-272 (476)
213 TIGR02015 BchY chlorophyllide 68.3 73 0.0016 31.0 11.2 94 8-144 286-379 (422)
214 cd01968 Nitrogenase_NifE_I Nit 67.2 72 0.0016 30.9 11.0 34 106-144 347-380 (410)
215 PRK08506 replicative DNA helic 67.1 65 0.0014 31.9 10.8 41 10-50 195-235 (472)
216 TIGR03600 phage_DnaB phage rep 67.1 70 0.0015 31.1 11.0 41 10-50 197-238 (421)
217 TIGR03446 mycothiol_Mca mycoth 66.7 60 0.0013 29.6 9.6 20 102-123 108-127 (283)
218 cd01124 KaiC KaiC is a circadi 66.3 30 0.00065 28.9 7.4 45 10-54 2-46 (187)
219 PF00448 SRP54: SRP54-type pro 66.1 84 0.0018 26.8 10.5 56 8-68 2-61 (196)
220 PRK09165 replicative DNA helic 65.3 61 0.0013 32.3 10.2 41 10-50 220-275 (497)
221 PRK14099 glycogen synthase; Pr 65.2 12 0.00027 37.1 5.4 85 341-429 350-448 (485)
222 TIGR02655 circ_KaiC circadian 64.7 26 0.00057 34.8 7.6 100 9-128 265-364 (484)
223 PRK13931 stationary phase surv 64.6 33 0.00071 30.8 7.4 29 20-48 12-43 (261)
224 TIGR02852 spore_dpaB dipicolin 64.6 8.7 0.00019 32.5 3.6 39 8-46 1-39 (187)
225 PRK05636 replicative DNA helic 64.4 41 0.00089 33.6 8.8 41 10-50 268-309 (505)
226 PRK00346 surE 5'(3')-nucleotid 64.2 39 0.00084 30.1 7.7 28 20-48 12-39 (250)
227 TIGR01286 nifK nitrogenase mol 64.1 81 0.0018 31.6 10.8 35 105-144 427-461 (515)
228 COG2910 Putative NADH-flavin r 64.1 7 0.00015 32.7 2.8 32 9-44 2-33 (211)
229 TIGR00665 DnaB replicative DNA 64.0 80 0.0017 30.8 10.8 41 10-50 198-239 (434)
230 PF06925 MGDG_synth: Monogalac 63.9 23 0.0005 29.3 6.1 43 102-146 76-124 (169)
231 PRK09620 hypothetical protein; 63.8 13 0.00027 32.7 4.6 38 7-44 3-52 (229)
232 TIGR00087 surE 5'/3'-nucleotid 63.7 39 0.00085 30.0 7.7 28 21-49 13-40 (244)
233 COG1703 ArgK Putative periplas 63.7 24 0.00052 32.1 6.3 42 5-46 49-90 (323)
234 PRK11823 DNA repair protein Ra 63.3 80 0.0017 31.0 10.5 43 9-51 82-124 (446)
235 cd02065 B12-binding_like B12 b 63.1 32 0.00068 26.5 6.5 45 10-54 2-46 (125)
236 COG1484 DnaC DNA replication p 63.0 15 0.00032 33.0 5.0 46 7-52 105-150 (254)
237 PRK13982 bifunctional SbtC-lik 62.8 11 0.00025 36.9 4.5 41 5-45 254-306 (475)
238 TIGR01284 alt_nitrog_alph nitr 61.9 61 0.0013 31.9 9.5 34 106-144 386-419 (457)
239 PRK14477 bifunctional nitrogen 61.8 87 0.0019 34.0 11.2 36 105-145 379-414 (917)
240 PRK05748 replicative DNA helic 61.3 96 0.0021 30.5 10.8 42 9-50 205-247 (448)
241 TIGR01862 N2-ase-Ialpha nitrog 61.2 1E+02 0.0022 30.3 10.8 34 106-144 378-411 (443)
242 PRK07313 phosphopantothenoylcy 60.8 12 0.00026 31.6 3.8 42 8-50 2-43 (182)
243 COG0541 Ffh Signal recognition 60.5 96 0.0021 30.0 9.9 62 6-68 99-160 (451)
244 cd01985 ETF The electron trans 59.9 1E+02 0.0022 25.7 10.8 39 104-144 80-121 (181)
245 PRK07773 replicative DNA helic 59.8 87 0.0019 33.9 10.9 41 10-50 220-261 (886)
246 PRK05920 aromatic acid decarbo 59.8 16 0.00035 31.3 4.5 40 7-47 3-42 (204)
247 PRK14098 glycogen synthase; Pr 59.3 17 0.00037 36.1 5.2 40 6-45 4-49 (489)
248 COG0801 FolK 7,8-dihydro-6-hyd 59.2 21 0.00044 29.3 4.7 34 282-315 3-36 (160)
249 PRK06988 putative formyltransf 58.6 1.3E+02 0.0029 27.8 10.7 33 8-45 3-35 (312)
250 PRK05986 cob(I)alamin adenolsy 58.3 1.2E+02 0.0025 25.9 10.6 103 5-127 20-125 (191)
251 cd07039 TPP_PYR_POX Pyrimidine 57.9 64 0.0014 26.6 7.6 24 363-386 67-96 (164)
252 PRK13789 phosphoribosylamine-- 57.4 28 0.0006 33.9 6.2 90 7-142 4-96 (426)
253 TIGR03880 KaiC_arch_3 KaiC dom 57.2 1.1E+02 0.0024 26.5 9.6 100 9-127 18-117 (224)
254 TIGR01861 ANFD nitrogenase iro 57.1 1.4E+02 0.0029 30.0 11.0 31 109-144 392-422 (513)
255 TIGR00460 fmt methionyl-tRNA f 57.0 1.2E+02 0.0025 28.2 10.0 33 8-45 1-33 (313)
256 PRK06029 3-octaprenyl-4-hydrox 56.0 19 0.0004 30.5 4.1 40 8-48 2-42 (185)
257 PRK10867 signal recognition pa 55.8 1.8E+02 0.0038 28.5 11.2 44 7-50 100-144 (433)
258 PRK02910 light-independent pro 55.2 1.3E+02 0.0027 30.3 10.6 36 105-145 352-387 (519)
259 PRK06732 phosphopantothenate-- 54.4 17 0.00038 31.9 3.9 20 25-44 30-49 (229)
260 TIGR00347 bioD dethiobiotin sy 54.3 1.2E+02 0.0026 24.8 10.4 28 14-41 5-32 (166)
261 cd01715 ETF_alpha The electron 54.1 1.2E+02 0.0027 24.9 11.2 41 103-145 71-114 (168)
262 PF01210 NAD_Gly3P_dh_N: NAD-d 54.1 7.9 0.00017 31.7 1.6 32 9-45 1-32 (157)
263 PLN02939 transferase, transfer 53.9 26 0.00057 37.5 5.6 84 340-427 836-930 (977)
264 TIGR02400 trehalose_OtsA alpha 53.9 7.4 0.00016 38.3 1.6 74 344-429 339-423 (456)
265 PF00148 Oxidored_nitro: Nitro 52.9 1.3E+02 0.0028 28.9 10.1 95 7-144 271-365 (398)
266 TIGR00640 acid_CoA_mut_C methy 52.6 77 0.0017 25.0 7.0 44 7-50 2-45 (132)
267 COG2109 BtuR ATP:corrinoid ade 52.6 1.4E+02 0.0031 25.2 9.1 102 7-128 28-133 (198)
268 cd03793 GT1_Glycogen_synthase_ 52.3 16 0.00035 36.7 3.7 77 350-429 467-553 (590)
269 cd07037 TPP_PYR_MenD Pyrimidin 51.7 82 0.0018 25.9 7.2 24 363-386 64-93 (162)
270 TIGR00421 ubiX_pad polyprenyl 51.6 19 0.00042 30.3 3.6 39 9-48 1-39 (181)
271 TIGR00416 sms DNA repair prote 51.5 1.3E+02 0.0029 29.5 9.9 42 9-50 96-137 (454)
272 PRK00784 cobyric acid synthase 51.3 2.1E+02 0.0046 28.5 11.4 35 9-43 4-39 (488)
273 PRK06027 purU formyltetrahydro 51.0 1.5E+02 0.0033 27.1 9.5 103 5-143 87-192 (286)
274 TIGR02699 archaeo_AfpA archaeo 50.9 25 0.00055 29.3 4.1 38 10-48 2-41 (174)
275 PRK13011 formyltetrahydrofolat 50.8 1.4E+02 0.0031 27.2 9.3 104 5-144 87-193 (286)
276 PF04244 DPRP: Deoxyribodipyri 50.7 34 0.00074 29.9 5.1 25 20-44 47-71 (224)
277 TIGR00959 ffh signal recogniti 50.6 2.1E+02 0.0045 28.0 10.8 44 7-50 99-143 (428)
278 PLN02939 transferase, transfer 50.5 1.6E+02 0.0035 31.9 10.6 42 5-46 479-526 (977)
279 PRK08006 replicative DNA helic 50.3 1.9E+02 0.0041 28.7 10.7 40 10-49 227-267 (471)
280 COG2874 FlaH Predicted ATPases 50.2 42 0.0009 29.1 5.2 88 17-128 38-134 (235)
281 PLN02470 acetolactate synthase 50.0 77 0.0017 32.4 8.3 92 286-386 2-109 (585)
282 cd03788 GT1_TPS Trehalose-6-Ph 49.8 7 0.00015 38.5 0.8 75 344-429 344-428 (460)
283 PF07355 GRDB: Glycine/sarcosi 49.7 36 0.00079 31.7 5.2 41 101-143 66-116 (349)
284 PRK05632 phosphate acetyltrans 49.4 1.8E+02 0.0038 30.5 10.9 36 9-44 4-40 (684)
285 PRK02122 glucosamine-6-phospha 49.3 1.6E+02 0.0035 30.6 10.3 34 8-42 370-404 (652)
286 TIGR01860 VNFD nitrogenase van 48.9 1.9E+02 0.0042 28.5 10.6 32 107-143 389-420 (461)
287 PRK07004 replicative DNA helic 48.8 1.9E+02 0.0041 28.6 10.5 41 10-50 216-257 (460)
288 PRK13604 luxD acyl transferase 48.7 45 0.00096 30.8 5.7 37 6-42 35-71 (307)
289 TIGR02113 coaC_strep phosphopa 48.3 24 0.00051 29.6 3.6 39 8-47 1-39 (177)
290 PRK14569 D-alanyl-alanine synt 47.4 44 0.00095 30.7 5.6 38 6-43 2-43 (296)
291 PRK12825 fabG 3-ketoacyl-(acyl 47.0 1.2E+02 0.0026 26.3 8.4 36 5-44 4-39 (249)
292 PF09001 DUF1890: Domain of un 46.4 22 0.00048 28.0 2.9 29 19-47 11-39 (139)
293 TIGR00379 cobB cobyrinic acid 46.0 2.8E+02 0.006 27.3 11.1 106 10-148 2-120 (449)
294 cd00316 Oxidoreductase_nitroge 45.6 2.8E+02 0.0061 26.5 11.5 36 105-145 338-373 (399)
295 PF03853 YjeF_N: YjeF-related 45.6 43 0.00093 27.8 4.8 37 5-42 23-59 (169)
296 PRK14092 2-amino-4-hydroxy-6-h 45.0 50 0.0011 27.2 4.9 30 280-309 7-36 (163)
297 TIGR03881 KaiC_arch_4 KaiC dom 45.0 1.4E+02 0.0031 25.9 8.3 44 8-51 21-64 (229)
298 cd01122 GP4d_helicase GP4d_hel 44.8 30 0.00066 31.1 4.1 43 9-51 32-75 (271)
299 TIGR02195 heptsyl_trn_II lipop 44.7 2.6E+02 0.0057 25.9 12.1 99 8-146 175-278 (334)
300 cd01976 Nitrogenase_MoFe_alpha 44.5 30 0.00065 33.6 4.2 36 105-145 359-394 (421)
301 PRK00039 ruvC Holliday junctio 44.5 62 0.0013 26.7 5.4 46 100-147 46-106 (164)
302 cd02072 Glm_B12_BD B12 binding 43.8 1E+02 0.0022 24.3 6.2 46 9-54 1-46 (128)
303 KOG2825 Putative arsenite-tran 43.4 1.7E+02 0.0037 26.1 8.0 48 7-54 18-66 (323)
304 PRK04148 hypothetical protein; 43.3 97 0.0021 24.6 6.1 33 6-44 16-48 (134)
305 COG1066 Sms Predicted ATP-depe 43.3 1.5E+02 0.0032 28.6 8.2 102 9-145 95-217 (456)
306 PRK09302 circadian clock prote 43.1 65 0.0014 32.3 6.4 46 9-54 275-320 (509)
307 KOG1014 17 beta-hydroxysteroid 43.1 63 0.0014 29.6 5.6 57 9-70 50-107 (312)
308 TIGR02700 flavo_MJ0208 archaeo 43.0 41 0.00089 29.7 4.5 39 10-48 2-42 (234)
309 TIGR03878 thermo_KaiC_2 KaiC d 42.5 2.5E+02 0.0055 25.1 12.6 38 9-46 38-75 (259)
310 cd00861 ProRS_anticodon_short 42.4 1E+02 0.0022 22.1 6.0 35 8-42 2-38 (94)
311 PF05728 UPF0227: Uncharacteri 42.4 51 0.0011 27.9 4.8 44 104-149 46-92 (187)
312 PRK12744 short chain dehydroge 42.2 1.6E+02 0.0035 25.9 8.4 40 1-43 1-40 (257)
313 COG2099 CobK Precorrin-6x redu 42.1 33 0.00072 30.4 3.6 39 104-144 55-99 (257)
314 TIGR00521 coaBC_dfp phosphopan 42.0 38 0.00083 32.5 4.4 43 7-50 3-45 (390)
315 PRK10964 ADP-heptose:LPS hepto 42.0 38 0.00083 31.4 4.4 40 8-47 1-42 (322)
316 cd01452 VWA_26S_proteasome_sub 41.8 2.2E+02 0.0047 24.2 9.2 60 10-70 111-173 (187)
317 COG2210 Peroxiredoxin family p 41.5 58 0.0012 25.8 4.5 33 12-44 8-40 (137)
318 PRK00090 bioD dithiobiotin syn 41.2 2.3E+02 0.0051 24.4 10.7 34 10-43 2-36 (222)
319 PRK11914 diacylglycerol kinase 41.2 94 0.002 28.6 6.8 81 282-387 12-96 (306)
320 cd07025 Peptidase_S66 LD-Carbo 41.0 61 0.0013 29.5 5.4 78 291-390 44-123 (282)
321 PRK08155 acetolactate synthase 41.0 1.3E+02 0.0029 30.5 8.4 80 296-386 14-109 (564)
322 PTZ00445 p36-lilke protein; Pr 40.8 2.4E+02 0.0053 24.4 8.8 30 19-48 74-104 (219)
323 PF02702 KdpD: Osmosensitive K 40.5 51 0.0011 28.2 4.3 40 5-44 3-42 (211)
324 PRK05579 bifunctional phosphop 40.5 55 0.0012 31.5 5.2 45 5-50 4-48 (399)
325 PRK06849 hypothetical protein; 40.5 58 0.0013 31.2 5.5 36 6-45 3-38 (389)
326 PRK07206 hypothetical protein; 40.3 1.2E+02 0.0027 29.2 7.8 33 8-45 3-35 (416)
327 TIGR03445 mycothiol_MshB 1D-my 40.3 2.3E+02 0.0049 25.9 8.9 20 102-123 110-129 (284)
328 cd01981 Pchlide_reductase_B Pc 40.0 47 0.001 32.4 4.8 35 106-145 361-395 (430)
329 CHL00076 chlB photochlorophyll 39.6 49 0.0011 33.1 4.9 36 105-145 364-399 (513)
330 PRK03094 hypothetical protein; 39.6 29 0.00063 24.6 2.3 21 24-44 10-30 (80)
331 PRK04885 ppnK inorganic polyph 39.4 26 0.00056 31.6 2.7 29 357-387 35-69 (265)
332 TIGR03877 thermo_KaiC_1 KaiC d 39.4 2.6E+02 0.0057 24.5 10.1 46 8-53 22-67 (237)
333 COG0223 Fmt Methionyl-tRNA for 39.4 1.4E+02 0.0031 27.5 7.3 36 7-47 1-36 (307)
334 COG0503 Apt Adenine/guanine ph 39.1 85 0.0018 26.4 5.6 37 106-144 44-82 (179)
335 PRK04328 hypothetical protein; 39.1 2.8E+02 0.006 24.6 13.4 45 9-53 25-69 (249)
336 PF07302 AroM: AroM protein; 39.1 2.6E+02 0.0057 24.4 11.1 33 109-143 172-207 (221)
337 cd01141 TroA_d Periplasmic bin 39.0 53 0.0011 27.5 4.5 38 105-145 60-99 (186)
338 TIGR02329 propionate_PrpR prop 39.0 2.3E+02 0.005 28.5 9.5 29 116-147 144-172 (526)
339 PRK00005 fmt methionyl-tRNA fo 39.0 3.2E+02 0.0069 25.3 10.7 32 8-44 1-32 (309)
340 COG2099 CobK Precorrin-6x redu 39.0 1.7E+02 0.0037 26.1 7.4 39 104-144 185-228 (257)
341 cd07035 TPP_PYR_POX_like Pyrim 38.9 1.4E+02 0.0031 24.0 6.9 25 363-387 63-93 (155)
342 TIGR01918 various_sel_PB selen 38.8 63 0.0014 31.0 5.1 41 101-143 62-112 (431)
343 COG0300 DltE Short-chain dehyd 38.7 94 0.002 28.0 6.0 42 7-53 5-46 (265)
344 TIGR01917 gly_red_sel_B glycin 38.7 63 0.0014 31.0 5.1 41 101-143 62-112 (431)
345 TIGR01278 DPOR_BchB light-inde 38.3 50 0.0011 33.1 4.8 36 106-146 355-390 (511)
346 PF13450 NAD_binding_8: NAD(P) 38.2 43 0.00092 22.8 3.0 20 25-44 9-28 (68)
347 PF03808 Glyco_tran_WecB: Glyc 38.0 2.3E+02 0.0051 23.4 9.5 127 117-318 5-135 (172)
348 PF10237 N6-adenineMlase: Prob 38.0 1.6E+02 0.0034 24.3 6.8 29 24-52 12-43 (162)
349 PRK13010 purU formyltetrahydro 38.0 3.2E+02 0.0069 25.0 9.4 103 6-144 92-197 (289)
350 PF06180 CbiK: Cobalt chelatas 37.6 56 0.0012 29.4 4.5 39 281-319 2-43 (262)
351 COG0163 UbiX 3-polyprenyl-4-hy 37.6 84 0.0018 26.4 5.0 41 7-48 2-42 (191)
352 KOG0780 Signal recognition par 37.5 3.2E+02 0.0069 26.3 9.2 46 7-52 101-146 (483)
353 cd07038 TPP_PYR_PDC_IPDC_like 37.4 1.8E+02 0.0039 23.8 7.2 25 363-387 63-93 (162)
354 cd01973 Nitrogenase_VFe_beta_l 37.2 4.2E+02 0.0091 26.1 11.8 36 106-144 370-405 (454)
355 PRK14476 nitrogenase molybdenu 37.2 2.7E+02 0.0059 27.4 9.6 25 117-144 371-395 (455)
356 PF07905 PucR: Purine cataboli 36.8 2E+02 0.0043 22.3 8.6 45 269-317 35-81 (123)
357 PRK12939 short chain dehydroge 36.8 2.4E+02 0.0052 24.5 8.6 39 1-43 1-39 (250)
358 PRK13394 3-hydroxybutyrate deh 36.7 2.3E+02 0.005 24.9 8.5 33 9-44 8-40 (262)
359 COG4088 Predicted nucleotide k 36.4 45 0.00098 28.7 3.4 35 10-44 4-38 (261)
360 COG4370 Uncharacterized protei 36.4 42 0.00091 30.6 3.4 79 346-431 300-382 (412)
361 PRK09739 hypothetical protein; 36.2 1E+02 0.0022 26.3 5.8 39 6-44 2-43 (199)
362 PRK04761 ppnK inorganic polyph 36.2 31 0.00066 30.7 2.6 28 358-387 26-57 (246)
363 TIGR00853 pts-lac PTS system, 35.7 1.1E+02 0.0023 22.6 5.0 39 6-44 2-40 (95)
364 PF13460 NAD_binding_10: NADH( 35.5 46 0.001 27.6 3.5 28 15-44 4-31 (183)
365 PF09314 DUF1972: Domain of un 35.5 2.7E+02 0.0059 23.5 10.0 30 18-47 16-46 (185)
366 TIGR00725 conserved hypothetic 35.5 54 0.0012 26.9 3.8 39 349-387 82-123 (159)
367 cd00561 CobA_CobO_BtuR ATP:cor 35.4 2.5E+02 0.0055 23.0 11.1 99 9-127 4-105 (159)
368 PF01372 Melittin: Melittin; 35.2 5.2 0.00011 20.8 -1.4 17 368-384 1-17 (26)
369 PF12695 Abhydrolase_5: Alpha/ 35.2 83 0.0018 24.5 4.9 35 10-44 1-35 (145)
370 TIGR00173 menD 2-succinyl-5-en 35.2 1E+02 0.0022 30.1 6.3 27 358-386 64-96 (432)
371 COG2120 Uncharacterized protei 35.1 75 0.0016 28.1 4.9 39 5-44 8-47 (237)
372 PRK11519 tyrosine kinase; Prov 35.0 1.1E+02 0.0025 32.1 7.0 40 7-46 525-566 (719)
373 PF02776 TPP_enzyme_N: Thiamin 35.0 1.7E+02 0.0036 24.2 6.8 27 362-388 67-99 (172)
374 PF05014 Nuc_deoxyrib_tr: Nucl 34.6 51 0.0011 25.0 3.4 39 353-391 57-101 (113)
375 PF02775 TPP_enzyme_C: Thiamin 34.3 2.3E+02 0.0049 22.8 7.4 121 285-428 22-145 (153)
376 cd02034 CooC The accessory pro 34.0 1.1E+02 0.0023 23.6 5.0 37 9-45 1-37 (116)
377 cd01840 SGNH_hydrolase_yrhL_li 33.9 95 0.0021 24.9 5.0 38 280-318 51-88 (150)
378 PF10740 DUF2529: Protein of u 33.8 71 0.0015 26.4 4.1 33 8-42 83-115 (172)
379 PRK06935 2-deoxy-D-gluconate 3 33.7 2.3E+02 0.0049 25.0 8.0 33 9-44 16-48 (258)
380 PRK13236 nitrogenase reductase 33.7 91 0.002 28.6 5.4 43 1-44 1-43 (296)
381 KOG0081 GTPase Rab27, small G 33.5 63 0.0014 26.3 3.6 37 115-151 122-168 (219)
382 PRK05784 phosphoribosylamine-- 33.3 2E+02 0.0043 28.6 8.0 32 8-44 1-34 (486)
383 PF03721 UDPG_MGDP_dh_N: UDP-g 33.1 82 0.0018 26.6 4.6 31 9-44 2-32 (185)
384 PRK09219 xanthine phosphoribos 33.1 1E+02 0.0023 26.1 5.2 41 103-145 38-80 (189)
385 COG0003 ArsA Predicted ATPase 33.0 4.1E+02 0.0089 24.8 10.0 41 8-48 2-43 (322)
386 PRK08862 short chain dehydroge 33.0 3.3E+02 0.0071 23.6 10.7 32 9-43 6-37 (227)
387 PF03698 UPF0180: Uncharacteri 32.9 42 0.0009 23.9 2.3 22 24-45 10-31 (80)
388 PRK13982 bifunctional SbtC-lik 32.7 68 0.0015 31.6 4.5 44 7-51 70-113 (475)
389 PRK06719 precorrin-2 dehydroge 32.7 69 0.0015 26.2 4.0 34 6-44 12-45 (157)
390 PF03720 UDPG_MGDP_dh_C: UDP-g 32.7 58 0.0013 24.5 3.3 30 22-51 17-46 (106)
391 PRK06249 2-dehydropantoate 2-r 32.6 57 0.0012 30.2 3.9 33 7-44 5-37 (313)
392 PRK10916 ADP-heptose:LPS hepto 32.4 4.2E+02 0.0092 24.7 12.1 103 8-146 181-288 (348)
393 TIGR02482 PFKA_ATP 6-phosphofr 32.0 42 0.00091 30.9 2.8 38 355-392 87-128 (301)
394 PRK07109 short chain dehydroge 32.0 2.8E+02 0.006 25.9 8.5 33 8-43 8-40 (334)
395 PF00070 Pyr_redox: Pyridine n 31.9 75 0.0016 22.2 3.6 23 23-45 10-32 (80)
396 PRK06276 acetolactate synthase 31.7 1.1E+02 0.0023 31.4 6.0 26 361-386 65-96 (586)
397 PF06506 PrpR_N: Propionate ca 31.7 23 0.0005 29.6 1.0 32 357-389 32-63 (176)
398 TIGR01829 AcAcCoA_reduct aceto 31.7 2.6E+02 0.0055 24.2 7.9 31 10-43 2-32 (242)
399 TIGR00064 ftsY signal recognit 31.7 2E+02 0.0044 26.0 7.2 42 7-48 72-113 (272)
400 PLN02583 cinnamoyl-CoA reducta 31.6 2.3E+02 0.0051 25.7 7.8 32 9-43 7-38 (297)
401 PRK04940 hypothetical protein; 31.4 1.2E+02 0.0025 25.6 5.1 32 117-148 60-92 (180)
402 TIGR03837 efp_adjacent_2 conse 31.4 61 0.0013 30.5 3.7 31 14-44 7-38 (371)
403 COG0062 Uncharacterized conser 31.4 1.4E+02 0.0031 25.6 5.7 39 7-46 49-87 (203)
404 cd07062 Peptidase_S66_mccF_lik 31.3 1E+02 0.0022 28.6 5.2 76 292-389 49-126 (308)
405 PF02558 ApbA: Ketopantoate re 31.2 79 0.0017 25.3 4.2 20 26-45 12-31 (151)
406 COG2179 Predicted hydrolase of 31.2 3.1E+02 0.0067 22.8 7.6 90 22-147 49-140 (175)
407 PF02571 CbiJ: Precorrin-6x re 31.2 3.2E+02 0.007 24.3 8.2 38 105-144 184-225 (249)
408 PRK02155 ppnK NAD(+)/NADH kina 31.2 45 0.00097 30.6 2.9 29 357-387 63-95 (291)
409 PF01695 IstB_IS21: IstB-like 31.0 72 0.0016 26.7 3.9 39 6-44 46-84 (178)
410 cd01425 RPS2 Ribosomal protein 31.0 3.3E+02 0.0072 23.1 8.8 33 115-147 125-159 (193)
411 PRK01372 ddl D-alanine--D-alan 30.8 79 0.0017 29.0 4.5 39 6-44 3-45 (304)
412 COG0678 AHP1 Peroxiredoxin [Po 30.8 2.3E+02 0.0049 23.0 6.2 41 6-46 36-83 (165)
413 COG4126 Hydantoin racemase [Am 30.8 2.8E+02 0.0062 24.1 7.2 39 103-143 162-202 (230)
414 PRK12829 short chain dehydroge 30.6 96 0.0021 27.4 5.0 35 5-43 9-43 (264)
415 PLN00016 RNA-binding protein; 30.5 69 0.0015 30.5 4.2 36 7-44 52-89 (378)
416 PF06745 KaiC: KaiC; InterPro 30.3 1.9E+02 0.0042 25.0 6.8 47 9-55 21-68 (226)
417 PRK08334 translation initiatio 30.2 4.8E+02 0.01 24.7 9.4 36 10-45 163-201 (356)
418 PRK04946 hypothetical protein; 30.2 33 0.00072 28.8 1.7 56 298-372 112-168 (181)
419 cd01983 Fer4_NifH The Fer4_Nif 29.8 1.3E+02 0.0029 21.2 4.9 33 10-42 2-34 (99)
420 PRK13057 putative lipid kinase 29.8 94 0.002 28.3 4.8 29 357-387 50-82 (287)
421 PRK06522 2-dehydropantoate 2-r 29.7 70 0.0015 29.2 4.0 30 9-43 2-31 (304)
422 PF14336 DUF4392: Domain of un 29.7 1.2E+02 0.0025 27.9 5.3 50 7-56 40-97 (291)
423 PRK08125 bifunctional UDP-gluc 29.6 6.6E+02 0.014 26.1 11.6 40 106-147 66-106 (660)
424 PLN02240 UDP-glucose 4-epimera 29.6 93 0.002 29.1 4.9 33 7-43 5-37 (352)
425 PRK12921 2-dehydropantoate 2-r 29.5 67 0.0015 29.4 3.9 30 9-43 2-31 (305)
426 PRK07178 pyruvate carboxylase 29.5 4.7E+02 0.01 25.9 9.9 97 8-143 3-103 (472)
427 PRK06276 acetolactate synthase 29.4 2.6E+02 0.0055 28.7 8.3 59 363-427 470-531 (586)
428 PRK13059 putative lipid kinase 29.4 2.4E+02 0.0053 25.8 7.4 25 363-387 60-90 (295)
429 PF10093 DUF2331: Uncharacteri 29.3 63 0.0014 30.6 3.5 30 15-44 8-38 (374)
430 PRK07666 fabG 3-ketoacyl-(acyl 29.2 1.2E+02 0.0026 26.3 5.3 40 1-44 1-40 (239)
431 PLN02695 GDP-D-mannose-3',5'-e 29.2 99 0.0021 29.4 5.0 33 7-43 21-53 (370)
432 PF02780 Transketolase_C: Tran 29.2 95 0.0021 24.0 4.1 36 7-44 9-44 (124)
433 PRK00652 lpxK tetraacyldisacch 29.0 98 0.0021 28.9 4.7 38 8-45 50-89 (325)
434 PRK14077 pnk inorganic polypho 29.0 50 0.0011 30.2 2.8 30 356-387 63-96 (287)
435 PRK06222 ferredoxin-NADP(+) re 28.9 1.4E+02 0.003 27.1 5.7 38 8-47 99-136 (281)
436 TIGR01007 eps_fam capsular exo 28.9 1.4E+02 0.003 25.4 5.5 38 8-45 17-56 (204)
437 KOG0832 Mitochondrial/chloropl 28.8 2.1E+02 0.0046 25.0 6.2 113 17-147 90-205 (251)
438 PRK12828 short chain dehydroge 28.7 1.3E+02 0.0028 26.0 5.4 32 10-44 9-40 (239)
439 TIGR00147 lipid kinase, YegS/R 28.6 2.3E+02 0.0049 25.8 7.2 26 362-387 60-91 (293)
440 PRK05282 (alpha)-aspartyl dipe 28.6 4.1E+02 0.0089 23.4 8.4 46 268-315 22-67 (233)
441 PRK06179 short chain dehydroge 28.6 1.1E+02 0.0023 27.4 4.9 33 9-44 5-37 (270)
442 PRK02231 ppnK inorganic polyph 28.6 59 0.0013 29.5 3.1 35 351-387 36-74 (272)
443 TIGR01279 DPOR_bchN light-inde 28.5 4.7E+02 0.01 25.3 9.5 36 6-46 273-308 (407)
444 cd02013 TPP_Xsc_like Thiamine 28.5 3.7E+02 0.0079 22.8 8.7 58 363-427 104-164 (196)
445 PRK01911 ppnK inorganic polyph 28.4 56 0.0012 30.0 3.0 32 354-387 61-96 (292)
446 PRK06180 short chain dehydroge 28.4 1.1E+02 0.0023 27.6 4.9 33 9-44 5-37 (277)
447 PF01380 SIS: SIS domain SIS d 28.4 1.3E+02 0.0029 23.0 4.9 35 14-48 59-93 (131)
448 cd06216 FNR_iron_sulfur_bindin 28.4 1.7E+02 0.0038 25.6 6.2 60 7-68 122-185 (243)
449 COG1748 LYS9 Saccharopine dehy 28.3 4.5E+02 0.0098 25.3 9.0 32 8-44 2-34 (389)
450 PF04493 Endonuclease_5: Endon 28.3 1.1E+02 0.0023 26.5 4.5 43 103-145 75-124 (206)
451 TIGR00313 cobQ cobyric acid sy 28.2 6E+02 0.013 25.2 12.4 29 16-44 8-36 (475)
452 PF10657 RC-P840_PscD: Photosy 28.1 99 0.0021 23.7 3.6 42 6-47 45-86 (144)
453 COG0859 RfaF ADP-heptose:LPS h 28.0 5E+02 0.011 24.2 12.2 100 7-147 175-279 (334)
454 cd00672 CysRS_core catalytic c 27.9 4E+02 0.0087 23.1 8.6 91 18-143 36-131 (213)
455 KOG0853 Glycosyltransferase [C 27.9 14 0.00031 36.2 -0.9 56 371-431 381-436 (495)
456 cd03412 CbiK_N Anaerobic cobal 27.9 1.1E+02 0.0025 23.9 4.3 38 281-318 2-41 (127)
457 COG0143 MetG Methionyl-tRNA sy 27.7 1.3E+02 0.0027 30.5 5.5 40 8-47 5-54 (558)
458 PF06506 PrpR_N: Propionate ca 27.7 12 0.00026 31.4 -1.4 30 116-148 124-153 (176)
459 PRK12481 2-deoxy-D-gluconate 3 27.7 3.5E+02 0.0077 23.7 8.1 33 8-43 8-40 (251)
460 TIGR01281 DPOR_bchL light-inde 27.6 1.1E+02 0.0024 27.4 4.8 36 9-44 2-37 (268)
461 PLN02293 adenine phosphoribosy 27.5 1.8E+02 0.004 24.6 5.8 43 100-144 47-91 (187)
462 PRK03708 ppnK inorganic polyph 27.5 45 0.00097 30.3 2.2 29 358-388 58-89 (277)
463 cd01147 HemV-2 Metal binding p 27.3 1E+02 0.0022 27.4 4.5 38 106-146 66-106 (262)
464 CHL00072 chlL photochlorophyll 27.3 1.2E+02 0.0027 27.7 5.1 38 9-46 2-39 (290)
465 TIGR00936 ahcY adenosylhomocys 27.2 5.4E+02 0.012 24.9 9.5 55 6-70 31-88 (406)
466 PRK12826 3-ketoacyl-(acyl-carr 27.1 4E+02 0.0086 23.0 8.4 33 8-44 7-39 (251)
467 PRK08277 D-mannonate oxidoredu 26.9 3.6E+02 0.0078 24.0 8.2 33 9-44 11-43 (278)
468 cd01075 NAD_bind_Leu_Phe_Val_D 26.9 1E+02 0.0022 26.4 4.2 33 4-41 25-57 (200)
469 PRK07449 2-succinyl-5-enolpyru 26.8 2.4E+02 0.0052 28.7 7.6 24 363-386 76-105 (568)
470 KOG1344 Predicted histone deac 26.8 2.2E+02 0.0047 24.9 5.9 45 102-148 235-301 (324)
471 TIGR00732 dprA DNA protecting 26.8 4.3E+02 0.0092 23.0 8.1 41 369-410 171-213 (220)
472 cd02040 NifH NifH gene encodes 26.7 1.2E+02 0.0026 27.1 5.0 38 8-45 2-39 (270)
473 PRK01966 ddl D-alanyl-alanine 26.7 1.1E+02 0.0025 28.5 4.9 39 6-44 2-44 (333)
474 TIGR00228 ruvC crossover junct 26.7 1.7E+02 0.0037 23.9 5.2 48 98-147 40-102 (156)
475 PRK02645 ppnK inorganic polyph 26.5 54 0.0012 30.3 2.6 29 357-387 57-89 (305)
476 TIGR00640 acid_CoA_mut_C methy 26.3 1.8E+02 0.0039 22.9 5.2 38 6-43 52-90 (132)
477 cd01421 IMPCH Inosine monophos 26.2 3.2E+02 0.0069 23.1 6.8 38 22-70 11-48 (187)
478 PLN02929 NADH kinase 26.2 58 0.0013 29.9 2.6 29 357-387 64-95 (301)
479 TIGR00708 cobA cob(I)alamin ad 26.2 3.9E+02 0.0084 22.3 12.0 100 7-127 5-107 (173)
480 COG0409 HypD Hydrogenase matur 26.1 33 0.00071 31.4 1.0 105 31-144 107-219 (364)
481 PF05762 VWA_CoxE: VWA domain 25.9 1.5E+02 0.0033 25.8 5.2 37 8-44 151-188 (222)
482 COG2086 FixA Electron transfer 25.9 1.3E+02 0.0029 26.9 4.8 40 104-145 100-145 (260)
483 KOG1208 Dehydrogenases with di 25.9 3.6E+02 0.0078 25.1 7.8 35 7-44 34-68 (314)
484 PLN02211 methyl indole-3-aceta 25.9 1.4E+02 0.0029 27.0 5.1 37 7-44 18-54 (273)
485 cd02032 Bchl_like This family 25.8 1.2E+02 0.0026 27.1 4.8 36 9-44 2-37 (267)
486 PF02353 CMAS: Mycolic acid cy 25.8 37 0.00081 30.8 1.4 43 363-405 67-111 (273)
487 PRK12743 oxidoreductase; Provi 25.6 3.7E+02 0.0081 23.6 7.9 32 9-43 3-34 (256)
488 PHA02857 monoglyceride lipase; 25.6 1.2E+02 0.0027 27.0 4.8 38 7-44 24-61 (276)
489 PF02635 DrsE: DsrE/DsrF-like 25.6 1.8E+02 0.0039 21.8 5.2 38 9-46 2-45 (122)
490 TIGR01744 XPRTase xanthine pho 25.5 1.7E+02 0.0036 24.9 5.2 40 103-144 38-79 (191)
491 PRK13055 putative lipid kinase 25.4 2.3E+02 0.005 26.5 6.7 82 282-387 6-93 (334)
492 TIGR01012 Sa_S2_E_A ribosomal 25.4 1.1E+02 0.0023 26.2 3.9 32 116-147 107-140 (196)
493 COG0305 DnaB Replicative DNA h 25.4 6.5E+02 0.014 24.6 10.1 116 10-144 199-352 (435)
494 cd00763 Bacterial_PFK Phosphof 25.3 64 0.0014 30.0 2.8 37 354-390 87-126 (317)
495 PRK14116 gpmA phosphoglyceromu 25.3 43 0.00092 29.4 1.6 20 363-382 179-198 (228)
496 PLN02989 cinnamyl-alcohol dehy 25.3 1.2E+02 0.0025 28.1 4.7 36 1-42 1-36 (325)
497 COG0240 GpsA Glycerol-3-phosph 25.1 1E+02 0.0022 28.7 4.0 32 8-44 2-33 (329)
498 COG0075 Serine-pyruvate aminot 25.0 6.2E+02 0.014 24.3 10.1 43 105-150 151-195 (383)
499 TIGR01689 EcbF-BcbF capsule bi 24.9 1.7E+02 0.0037 22.9 4.7 25 23-47 28-52 (126)
500 PRK00771 signal recognition pa 24.9 2.6E+02 0.0055 27.4 6.9 43 6-48 94-136 (437)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.2e-61 Score=463.28 Aligned_cols=422 Identities=56% Similarity=1.022 Sum_probs=318.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..........+..++|+.+++|...+++|.+.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 45799999999999999999999999999999999999988766655433211122349999999886555787766554
Q ss_pred CCCCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 86 DLLPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
.+.+... ...+......+.+.+.+++++...++|+||+|.+..|+..+|+++|||.+.+++++++.+...+.+......
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 4433333 444555666778888888886435789999999999999999999999999999999887765443322222
Q ss_pred CCCCCCCCcccCCCCCCCccccccccCccCCC-CcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEe
Q 013951 165 ENVTSDSEYFNIPGLPDHIEFTKVQLLISKRD-DDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCI 243 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 243 (433)
.....+..+..+|+++....++..+++.++.. .....+...+.+.....+++++|||.+||+.+++.++..++++++.|
T Consensus 167 ~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 167 LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred ccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 21222233456788876555677777664422 23344444443333456789999999999999998887777789999
Q ss_pred CcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchh
Q 013951 244 GPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLE 323 (433)
Q Consensus 244 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 323 (433)
||++...........++......+.+|.+||+.+++++||||||||......+++.+++.+|+.++++|||++.......
T Consensus 247 GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~ 326 (491)
T PLN02534 247 GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHS 326 (491)
T ss_pred CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCcccc
Confidence 99975322111100111111112356999999999889999999999999999999999999999999999998431110
Q ss_pred hhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhcc
Q 013951 324 ALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLR 403 (433)
Q Consensus 324 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G 403 (433)
....+.+|++|.++..+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++++|.+|
T Consensus 327 ~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~ 406 (491)
T PLN02534 327 ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLR 406 (491)
T ss_pred chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhc
Confidence 11112267889888778899999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceEEeeee-------------ccCCcccccchhhccc
Q 013951 404 IGVSVGVE-------------VDLPITTSNYLCKISC 427 (433)
Q Consensus 404 ~G~~l~~~-------------~~~~~~l~~ai~~il~ 427 (433)
+|+.+..+ ..+.+.+.++|++++.
T Consensus 407 vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 407 IGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 99987421 2677889999999995
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.6e-61 Score=464.49 Aligned_cols=420 Identities=43% Similarity=0.798 Sum_probs=309.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhh--hCCCCeEEEEecCCCccCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAI--KSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
++.||+++|+|+.||++|++.||++|++|||+|||++++.+...+++...... ..+..+++..++++..+.++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 45799999999999999999999999999999999999988766665443221 1122346666666655446666554
Q ss_pred CCCCCC------Ccc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHh
Q 013951 84 NCDLLP------TTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHH 156 (433)
Q Consensus 84 ~~~~~~------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 156 (433)
...... ... +..+......+.+.+++++++ .+||+||+|.++.|+..+|+++|||++.+++++++.+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 432111 112 223344455778888888887 78999999999999999999999999999999988776655
Q ss_pred hhhccccCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhc
Q 013951 157 LLGVSKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAK 236 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (433)
....+.+............+|+++..+..+..+++..-....+..++....+...+.+++++||+.+||++..+.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 44322211111111122347777643334444444321112234555555566778889999999999998888777666
Q ss_pred CCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEE
Q 013951 237 QGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVI 316 (433)
Q Consensus 237 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 316 (433)
+.++++|||+............++...+..+.++.+|++.++++++|||||||+...+.+.+.+++.+|+.++++|||++
T Consensus 242 ~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~ 321 (482)
T PLN03007 242 AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVV 321 (482)
T ss_pred CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 66899999986542211000011111122357799999999889999999999999889999999999999999999999
Q ss_pred eCCcch-hhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhH
Q 013951 317 RGVSKL-EALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNE 395 (433)
Q Consensus 317 ~~~~~~-~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na 395 (433)
+..... +.... +|++|.++..+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||
T Consensus 322 ~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na 399 (482)
T PLN03007 322 RKNENQGEKEEW--LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNE 399 (482)
T ss_pred ecCCcccchhhc--CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhH
Confidence 864221 11112 788999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccceEEe--------eeeccCCcccccchhhccccc
Q 013951 396 KLIVNVLRIGVSV--------GVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 396 ~~v~e~~G~G~~l--------~~~~~~~~~l~~ai~~il~~~ 429 (433)
+++++..++|+.+ +...++.+.++++|++++.++
T Consensus 400 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 400 KLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred HHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 9885444555544 334578999999999999876
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-60 Score=459.63 Aligned_cols=417 Identities=35% Similarity=0.611 Sum_probs=314.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCEN 84 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (433)
.++.||+++|+|++||++||+.||+.|+.+|+.|||++++.+...++.... ...+++++.++++..+ ++|.+.++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~-~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHP-SIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcC-CCCCCCcC
Confidence 467899999999999999999999999999999999999988766544321 1235888888876543 77777765
Q ss_pred CCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 85 CDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
..+.+......+..+...+.+.+.+++++.+.+|++||+|.+..|+..+|+++|||++.+++++++.+..++++....+.
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 82 VKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 54433222445556666778888888877445789999999999999999999999999999999999888776533221
Q ss_pred CC-CCCCCC---cccCCCCCCCccccccccCccCCCC----cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhc
Q 013951 165 EN-VTSDSE---YFNIPGLPDHIEFTKVQLLISKRDD----DRKELREQILAADKKTYGAIINTFEELESPFIENYKKAK 236 (433)
Q Consensus 165 ~~-~~~~~~---~~~~p~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (433)
.. ...... ...+|+++. ++.++++.+++.. .....+.........+.++++|||.+||+.+++.++..+
T Consensus 162 ~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 162 KINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred cccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 11 011111 124666654 6667776544321 122233333333456778999999999999999988766
Q ss_pred C-CcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEE
Q 013951 237 Q-GKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWV 315 (433)
Q Consensus 237 ~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 315 (433)
+ ++++.|||++...........++...+..++++.+||+.++++++|||||||+...+.+++.+++.+|+..+++|||+
T Consensus 239 ~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5 689999999754211000001111111135679999999988899999999999999999999999999999999999
Q ss_pred EeCCcchh-hhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchh
Q 013951 316 IRGVSKLE-ALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCN 394 (433)
Q Consensus 316 ~~~~~~~~-~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~n 394 (433)
++...... .... +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 319 ~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 396 (477)
T PLN02863 319 VKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396 (477)
T ss_pred ECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhh
Confidence 97532211 1112 78889888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccceEEeee---eccCCcccccchhhcc-ccccc
Q 013951 395 EKLIVNVLRIGVSVGV---EVDLPITTSNYLCKIS-CNSQA 431 (433)
Q Consensus 395 a~~v~e~~G~G~~l~~---~~~~~~~l~~ai~~il-~~~~~ 431 (433)
|+++++++|+|+.+.. ...+.+.+.++|++++ +++++
T Consensus 397 a~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~ 437 (477)
T PLN02863 397 ASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVE 437 (477)
T ss_pred HHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHH
Confidence 9997557899999843 2346788888999887 44443
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-60 Score=454.29 Aligned_cols=414 Identities=28% Similarity=0.458 Sum_probs=307.5
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCC
Q 013951 4 EASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
+..+.||+++|+|++||++|++.||+.|+.||..|||++++.+...+...... ...+++++.++++..+ ++|.+.+
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~d-glp~~~~ 78 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVP-GLPSSAE 78 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccC-CCCCCcc
Confidence 34567999999999999999999999999999999999999876555432111 1225899999977554 6776554
Q ss_pred CCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhcccc
Q 013951 84 NCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKV 163 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 163 (433)
+..+........+..+.+.+.+.+++++++ .++++||+|.+..|+..+|+++|||++.++++++..+..+++......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 332221110123445556788889999988 689999999999999999999999999999999988776554321111
Q ss_pred CCCCCCCCCc-ccCCCC-CC--CccccccccCccCCC-----CcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHh
Q 013951 164 HENVTSDSEY-FNIPGL-PD--HIEFTKVQLLISKRD-----DDRKELREQILAADKKTYGAIINTFEELESPFIENYKK 234 (433)
Q Consensus 164 ~~~~~~~~~~-~~~p~l-~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 234 (433)
.......... ..+|+. |. .+.++..+++.+... .....+. .......++.++++|||.+||+.+++.++.
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 1111111111 123432 21 112445566654421 1122333 223345678899999999999999998877
Q ss_pred hcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEE
Q 013951 235 AKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVW 314 (433)
Q Consensus 235 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 314 (433)
.++++++.|||+......... ..........++.+||+++++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 666789999999653110000 00000011257999999998889999999999999999999999999999999999
Q ss_pred EEeCCcch-hhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccch
Q 013951 315 VIRGVSKL-EALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFC 393 (433)
Q Consensus 315 ~~~~~~~~-~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (433)
++...... .....+ +|++|.++.....+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 313 v~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (472)
T PLN02670 313 VLRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGL 391 (472)
T ss_pred EEcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHH
Confidence 99853111 111112 8899998888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhccceEEeeeec----cCCcccccchhhccccc
Q 013951 394 NEKLIVNVLRIGVSVGVEV----DLPITTSNYLCKISCNS 429 (433)
Q Consensus 394 na~~v~e~~G~G~~l~~~~----~~~~~l~~ai~~il~~~ 429 (433)
||+++ +++|+|+.++..+ ++.+.++++|++++.++
T Consensus 392 Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 392 NTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred HHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 99999 5999999997533 78899999999999775
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.8e-60 Score=450.84 Aligned_cols=394 Identities=25% Similarity=0.365 Sum_probs=298.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
.++||+++|+|+.||++|++.||+.|+++||+|||++++.+...+... ......+++..++++.. +++|.+.++.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~----~a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH----NLFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc----cCCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 367999999999999999999999999999999999998765544331 11122467777766432 2566654432
Q ss_pred CCCCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 86 DLLPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
.+.. .+ ...+......+.+.+++++++ .++|+||+| ++.|+..+|+++|||++.++++++..+. +.+.+.
T Consensus 78 ~~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 78 SDIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 2211 11 223444456788889999988 799999999 5789999999999999999999988653 332211
Q ss_pred CCCCCCCCcccCCCCCCC-ccccccccCccCCC-CcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEE
Q 013951 165 ENVTSDSEYFNIPGLPDH-IEFTKVQLLISKRD-DDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWC 242 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 242 (433)
... ...+|+++.. +.++..+++.+... ..+..+...+.+...+++++++|||.+||+.+.+.+.+.++++++.
T Consensus 149 ~~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 149 GKL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred ccc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 000 1124677642 23445555543111 1133333333345567889999999999999999998888889999
Q ss_pred eCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcch
Q 013951 243 IGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKL 322 (433)
Q Consensus 243 vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 322 (433)
|||++..... ...++.++.+||+.+++++||||||||...++.+++.+++.+++..+.+++|++......
T Consensus 224 vGpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 224 TGPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EeecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 9999754210 012467899999999888999999999999999989999888887888888877643110
Q ss_pred hhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhc
Q 013951 323 EALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVL 402 (433)
Q Consensus 323 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~ 402 (433)
.....+ +|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 294 ~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~ 372 (442)
T PLN02208 294 STVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372 (442)
T ss_pred cchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh
Confidence 011112 8999999999999999999999999999999999999999999999999999999999999999999875459
Q ss_pred cceEEeeeec---cCCcccccchhhccccc
Q 013951 403 RIGVSVGVEV---DLPITTSNYLCKISCNS 429 (433)
Q Consensus 403 G~G~~l~~~~---~~~~~l~~ai~~il~~~ 429 (433)
|+|+.++.++ ++.+.++++|+++++++
T Consensus 373 g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 373 EVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred ceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 9999997654 89999999999999765
No 6
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-59 Score=443.09 Aligned_cols=395 Identities=26% Similarity=0.398 Sum_probs=299.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
++.||+++|+|++||++|++.||+.|+++|++|||++++.+...++... .....+++..++++..+ ++|.+.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~d-GLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVD-GLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcC-CCCCccccc
Confidence 4679999999999999999999999999999999999997765443321 11124888777766433 677664433
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
.+........+......+.+.+++++++ .+||+||+|. +.|+..+|+++|||++.++++++..+.+..++..
T Consensus 78 ~~l~~~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~----- 149 (446)
T PLN00414 78 SDLPNSTKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA----- 149 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-----
Confidence 3222111223455556778888888887 7899999995 7899999999999999999999988776654210
Q ss_pred CCCCCCCcccCCCCCCC-ccccccc--cCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEE
Q 013951 166 NVTSDSEYFNIPGLPDH-IEFTKVQ--LLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWC 242 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 242 (433)
..+ ..+|+++.. +.++..+ ++.++.. ....+....+...+++++++|||.+||+.+++.++..++++++.
T Consensus 150 ~~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 222 (446)
T PLN00414 150 ELG-----FPPPDYPLSKVALRGHDANVCSLFAN--SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLL 222 (446)
T ss_pred hcC-----CCCCCCCCCcCcCchhhcccchhhcc--cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 000 123555431 1112122 1222221 11233333445677889999999999999999887766678999
Q ss_pred eCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcch
Q 013951 243 IGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKL 322 (433)
Q Consensus 243 vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 322 (433)
|||+....... .+ ...+.++.+|||.+++++||||||||....+.+++.++..+|+..+.+|+|++......
T Consensus 223 VGPl~~~~~~~-----~~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 223 TGPMLPEPQNK-----SG---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred EcccCCCcccc-----cC---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 99996532100 00 11245688999999999999999999999999999999999999999999999753211
Q ss_pred hhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhc
Q 013951 323 EALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVL 402 (433)
Q Consensus 323 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~ 402 (433)
+....+ +|++|.++..+.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++++.
T Consensus 295 ~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~ 373 (446)
T PLN00414 295 STVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEEL 373 (446)
T ss_pred ccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHh
Confidence 111122 8999999998899999999999999999999999999999999999999999999999999999999996579
Q ss_pred cceEEeeee---ccCCcccccchhhccccc
Q 013951 403 RIGVSVGVE---VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 403 G~G~~l~~~---~~~~~~l~~ai~~il~~~ 429 (433)
|+|+.++.+ .++.+.++++|+++++++
T Consensus 374 g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 374 EVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred CeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 999999643 378999999999999764
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=9.3e-59 Score=439.36 Aligned_cols=395 Identities=26% Similarity=0.423 Sum_probs=299.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... .....+..+.+..+| .. +++|.+.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p--~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVP--HV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECC--Cc-CCCCCccccc
Confidence 357999999999999999999999999999999999999876544331 100011124555444 32 3677665544
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
.+........+..+...+.+.+.+++++ .+||+||+| +..|+..+|+++|||++.++++++..+.+... . ..
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~ 150 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GG 150 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cc
Confidence 3333111344556666778899999988 689999999 47899999999999999999999987776542 1 11
Q ss_pred CCCCCCCcccCCCCCCC-ccccccccCccCC--C----CcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCC
Q 013951 166 NVTSDSEYFNIPGLPDH-IEFTKVQLLISKR--D----DDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQG 238 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~-~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 238 (433)
.. ...+|+++.. +.++.++++.+.. . .....+...+.....+++++++|||.+||+.+++.++...++
T Consensus 151 ~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~ 225 (453)
T PLN02764 151 EL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRK 225 (453)
T ss_pred cC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCC
Confidence 11 1123666531 1234444443211 1 113344444445567788999999999999999988765557
Q ss_pred cEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeC
Q 013951 239 KVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRG 318 (433)
Q Consensus 239 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 318 (433)
+++.|||++...... ...+.++.+|||.+++++||||||||...++.+++.++..+|+..+.+|+|++..
T Consensus 226 ~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 226 KVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred cEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 899999996532100 0124679999999999999999999999999999999999999999999999985
Q ss_pred CcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHh
Q 013951 319 VSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLI 398 (433)
Q Consensus 319 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 398 (433)
....+....+ +|++|.++..+.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++
T Consensus 296 ~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l 374 (453)
T PLN02764 296 PRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLL 374 (453)
T ss_pred CCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHH
Confidence 3211111122 899999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceEEeeee---ccCCcccccchhhccccc
Q 013951 399 VNVLRIGVSVGVE---VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 399 ~e~~G~G~~l~~~---~~~~~~l~~ai~~il~~~ 429 (433)
++.+|+|+.++.+ .++.+.++++|+++++++
T Consensus 375 ~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 375 SDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred HHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 6468999887543 478999999999999774
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1e-58 Score=443.04 Aligned_cols=396 Identities=27% Similarity=0.400 Sum_probs=300.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLA-QHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+..... ...+++++.+|++..+ +++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCc--
Confidence 35999999999999999999999998 78999999999987654422211 1125888888865432 4431110
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhc-cccC
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGV-SKVH 164 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-~~~~ 164 (433)
.....+......+.+.+++++++...+|++||+|.+..|+..+|+++|||++.++++.+..+....+.+. ....
T Consensus 78 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 152 (481)
T PLN02992 78 -----HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI 152 (481)
T ss_pred -----cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc
Confidence 0122333344466788888888744579999999999999999999999999999999988766554432 1111
Q ss_pred CC-CCCCCCcccCCCCCCCccccccccCccCCCC--cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhh--c---
Q 013951 165 EN-VTSDSEYFNIPGLPDHIEFTKVQLLISKRDD--DRKELREQILAADKKTYGAIINTFEELESPFIENYKKA--K--- 236 (433)
Q Consensus 165 ~~-~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~--- 236 (433)
.. ......+..+|+++. ++..+++..+... .....+........+++++++||+.+||+.+++.++.. +
T Consensus 153 ~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~ 229 (481)
T PLN02992 153 KEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRV 229 (481)
T ss_pred ccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccc
Confidence 10 001112345777765 5556666433221 11223333344567788999999999999999887542 1
Q ss_pred -CCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEE
Q 013951 237 -QGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWV 315 (433)
Q Consensus 237 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 315 (433)
.++++.|||++..... ...+.++.+||+.+++++||||||||+..++.+++++++.+|+.++++|||+
T Consensus 230 ~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~ 298 (481)
T PLN02992 230 ARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWV 298 (481)
T ss_pred cCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2579999999753210 0125579999999988899999999999999999999999999999999999
Q ss_pred EeCCcc---------------hhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCC
Q 013951 316 IRGVSK---------------LEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGV 380 (433)
Q Consensus 316 ~~~~~~---------------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~Gv 380 (433)
+..... .+.+.++ +|++|.+|....|+++.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 299 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GV 377 (481)
T PLN02992 299 VRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGV 377 (481)
T ss_pred EeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCC
Confidence 963210 0011122 889999999999999999999999999999999999999999999999999
Q ss_pred cEEecccccccchhHHHhhhhccceEEeeee--ccCCcccccchhhccccc
Q 013951 381 QMLTWPLFADQFCNEKLIVNVLRIGVSVGVE--VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 381 P~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~--~~~~~~l~~ai~~il~~~ 429 (433)
|||++|+++||+.||+++++++|+|+.++.. .++.+.++++|++++.++
T Consensus 378 P~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 378 PMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred CEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 9999999999999999994499999999763 489999999999999775
No 9
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-58 Score=440.66 Aligned_cols=407 Identities=27% Similarity=0.464 Sum_probs=297.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEE--ECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHG--AIVTIV--TTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rG--H~Vt~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
..||+++|+|++||++||+.||+.|+.+| +.||++ +++.+...+............+++++.+|.+.. .+...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 46999999999999999999999999998 556664 444332222222212111123589998875311 11111
Q ss_pred CCCCCCCCcc-HHHHHHHHHHhHHHHHHHHHhCC--CCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 013951 83 ENCDLLPTTD-FARFMKSLHMLQQPFENLFKEKT--LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLG 159 (433)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~--~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (433)
. . ... ...+......+.+.+.++++++. .++++||+|.+..|+..+|+++|||++.+++++++.+..+.+.+
T Consensus 80 ~--~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 T--S---RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred c--c---ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1 1 111 22333344456666677776531 24599999999999999999999999999999999888777654
Q ss_pred ccc-cCCCCC-CCCCcccCCCCCCCccccccccCccCCCCc--HHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhh
Q 013951 160 VSK-VHENVT-SDSEYFNIPGLPDHIEFTKVQLLISKRDDD--RKELREQILAADKKTYGAIINTFEELESPFIENYKKA 235 (433)
Q Consensus 160 ~~~-~~~~~~-~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (433)
... ...... ....+..+|+++. ++..+++.+..... ....+....+...+++++++|||.+||+.+++.++..
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 211 100000 1112345788876 66777776554321 2233444445566778999999999999999988765
Q ss_pred cC-CcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEE
Q 013951 236 KQ-GKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVW 314 (433)
Q Consensus 236 ~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 314 (433)
+. ++++.|||++...... . .. . ..+.++.+||+++++++||||||||...++.+++++++.+|+.++.+|||
T Consensus 232 ~~~~~v~~vGPl~~~~~~~----~-~~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIE----D-RN-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCCEEEEeeeccCcccc----c-cc-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 43 6899999997422100 0 01 1 12356999999998899999999999999999999999999999999999
Q ss_pred EEeCCcch-h---hhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccc
Q 013951 315 VIRGVSKL-E---ALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFAD 390 (433)
Q Consensus 315 ~~~~~~~~-~---~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~D 390 (433)
++...... . ....+ +|++|.+|....|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 305 ~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 305 VVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 99853110 0 11223 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhhccceEEeeee---ccCCcccccchhhcccccccc
Q 013951 391 QFCNEKLIVNVLRIGVSVGVE---VDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 391 Q~~na~~v~e~~G~G~~l~~~---~~~~~~l~~ai~~il~~~~~~ 432 (433)
|+.||+++++++|+|+.++.. ..+.+.++++|+++++|+.++
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHH
Confidence 999999995357999999754 468899999999999886543
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.5e-58 Score=436.21 Aligned_cols=396 Identities=27% Similarity=0.441 Sum_probs=292.5
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCC
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPE 80 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (433)
|+.+..+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+|. ++|.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~-----glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPE-----SLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCC-----CCCc
Confidence 7777778899999999999999999999999999999999999976421 10 1112588888763 4554
Q ss_pred CCCCCCCCCCccHHHHHHH-HHHhHHHHHHHHHhC----CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 013951 81 GCENCDLLPTTDFARFMKS-LHMLQQPFENLFKEK----TLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCH 155 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~----~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 155 (433)
+... ... .. .+... ...+.+.+.+.+++. ..++++||+|.+..|+..+|+++|||++.+++++++.+.++
T Consensus 69 ~~~~--~~~--~~-~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~ 143 (451)
T PLN02410 69 SDFK--NLG--PI-EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCR 143 (451)
T ss_pred cccc--ccC--HH-HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHH
Confidence 2111 111 11 22222 224455556555542 24679999999999999999999999999999999988766
Q ss_pred hhhhccc------cCCCCCCCCCcccCCCCCCCccccccccCccCCCC--cHHHHHHHHHHhcccccEEEEcChhhcchH
Q 013951 156 HLLGVSK------VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDD--DRKELREQILAADKKTYGAIINTFEELESP 227 (433)
Q Consensus 156 ~~~~~~~------~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 227 (433)
.++.... +..... ......+|+++. ++.++++.+.... .....+.... ...+++++++|||.+||+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~ 218 (451)
T PLN02410 144 SVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESS 218 (451)
T ss_pred HHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHH
Confidence 6543211 111110 112335777765 4455555432111 1222222222 2457789999999999999
Q ss_pred HHHHHHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHh
Q 013951 228 FIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEA 307 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 307 (433)
+++.++...++++++|||++...... ...+....++.+||+.+++++||||||||....+.+.+.++..+|+.
T Consensus 219 ~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~ 291 (451)
T PLN02410 219 SLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDS 291 (451)
T ss_pred HHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHh
Confidence 99988776777899999997542110 00111234688999999888999999999999999999999999999
Q ss_pred CCCCEEEEEeCCcchh-h-hhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 308 SNKPFVWVIRGVSKLE-A-LEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 308 ~~~~~i~~~~~~~~~~-~-~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
.+.+|+|++......+ . ... +|++|.+|.. +|.++.+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 292 s~~~FlWv~r~~~~~~~~~~~~--lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 292 SNQQFLWVIRPGSVRGSEWIES--LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred cCCCeEEEEccCcccccchhhc--CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 9999999998432100 0 111 7888888764 566777999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 386 PLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 386 P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
|+++||+.||+++++..|+|+.++ ..++.+.++++|++++.++
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCC
Confidence 999999999999963449999997 5789999999999999775
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.4e-57 Score=433.81 Aligned_cols=410 Identities=27% Similarity=0.463 Sum_probs=297.7
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHH--H-HHh-hhCCC-CeEEEEecCCCcc
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTV--I-ARA-IKSGL-QIRLIEIQFPWQE 75 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~--~-~~~-~~~~~-~~~~~~i~~~~~~ 75 (433)
|.++..+.||+++|+|++||++||+.||+.|+.+|..|||++++.+...+.+. . ... ...+. .++|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 78888889999999999999999999999999999999999999766554321 1 000 00011 14444443
Q ss_pred CCCCCCCCCCCCCCCccHHHHHHHHH-HhHHHHHHHHHhCC--CCC-cEEEECCCCcchHHHHHHcCCCcEEEecchHHH
Q 013951 76 AGIPEGCENCDLLPTTDFARFMKSLH-MLQQPFENLFKEKT--LKP-CCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFC 151 (433)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 151 (433)
+++|.+.+.. .++..++.... .+.+.+.++++... .+| ++||+|.+..|+..+|+++|||.+.+++++++.
T Consensus 76 dglp~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~ 150 (480)
T PLN02555 76 DGWAEDDPRR-----QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCAC 150 (480)
T ss_pred CCCCCCcccc-----cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHH
Confidence 2555543311 12223333333 45667777776421 244 999999999999999999999999999999998
Q ss_pred HHHHhhhhccc-cCCCCCCCCCcccCCCCCCCccccccccCccCCCC----cHHHHHHHHHHhcccccEEEEcChhhcch
Q 013951 152 LFCHHLLGVSK-VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDD----DRKELREQILAADKKTYGAIINTFEELES 226 (433)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 226 (433)
+..++++.... .......+..+..+|+++. ++.++++.++... .....+.+..+...+.+++++|||.+||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 227 (480)
T PLN02555 151 FSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEK 227 (480)
T ss_pred HHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhH
Confidence 88777653210 1111111123345888876 6677777655321 11222333334556788999999999999
Q ss_pred HHHHHHHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHH
Q 013951 227 PFIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLE 306 (433)
Q Consensus 227 ~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 306 (433)
.+++.+++.. + ++.|||+......... ..+...+..+.++.+||+.++++++|||||||+..++.+++.+++.+++
T Consensus 228 ~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~ 303 (480)
T PLN02555 228 EIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVL 303 (480)
T ss_pred HHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHH
Confidence 9998886643 4 9999999754221100 0011112345689999999988889999999999999999999999999
Q ss_pred hCCCCEEEEEeCCcchhhh-hhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 307 ASNKPFVWVIRGVSKLEAL-EKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 307 ~~~~~~i~~~~~~~~~~~~-~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
..+++|||++......... ..+ +|+++.++. .+|+++.+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 304 ~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~ 381 (480)
T PLN02555 304 NSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCF 381 (480)
T ss_pred hcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeC
Confidence 9999999998743110000 011 777776554 4677888999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHhhhhccceEEee-----eeccCCcccccchhhccccc
Q 013951 386 PLFADQFCNEKLIVNVLRIGVSVG-----VEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 386 P~~~DQ~~na~~v~e~~G~G~~l~-----~~~~~~~~l~~ai~~il~~~ 429 (433)
|+++||+.||+++++.+|+|+.++ ...++.+.+.++|++++.++
T Consensus 382 P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 382 PQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred CCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 999999999999965569999994 33578899999999999764
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.6e-57 Score=434.57 Aligned_cols=394 Identities=26% Similarity=0.416 Sum_probs=291.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+... ...+++++.+|. +++.+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~----- 71 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDD----- 71 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCC-----
Confidence 4599999999999999999999999999999999999987655443321 112588888763 22211
Q ss_pred CCCCccHHHHHHHHH-HhHHHHHHHHHhCC--CCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhcccc
Q 013951 87 LLPTTDFARFMKSLH-MLQQPFENLFKEKT--LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKV 163 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 163 (433)
. ..++..+..++. .+.+.+.++++++. .++++||+|.+..|+..+|+++|||++.++++++..+...++.+....
T Consensus 72 -~-~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~ 149 (448)
T PLN02562 72 -P-PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVR 149 (448)
T ss_pred -c-cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhh
Confidence 0 112334555555 57788888887631 134899999999999999999999999999999887776655432111
Q ss_pred ---CCCCCCC--CCc-ccCCCCCCCccccccccCccCCCC----cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHH
Q 013951 164 ---HENVTSD--SEY-FNIPGLPDHIEFTKVQLLISKRDD----DRKELREQILAADKKTYGAIINTFEELESPFIENYK 233 (433)
Q Consensus 164 ---~~~~~~~--~~~-~~~p~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 233 (433)
....+.+ ..+ ..+|+++. ++.++++.++... .....+.+..+...++.++++|||.+||+..++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 226 (448)
T PLN02562 150 TGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQ 226 (448)
T ss_pred ccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHH
Confidence 1111111 111 24677765 5667777654321 122333344455667889999999999998877654
Q ss_pred h----hcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCc-CCChhhHHHHHHHHHhC
Q 013951 234 K----AKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSIC-NLPSSQLIELGLGLEAS 308 (433)
Q Consensus 234 ~----~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~ 308 (433)
. +..++++.|||++...... ..+...+..+.++.+||++++++++|||||||+. .++.+.+++++.+|++.
T Consensus 227 ~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~ 302 (448)
T PLN02562 227 ASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEAS 302 (448)
T ss_pred hhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHC
Confidence 3 3457899999997643210 0000001124567799999988899999999986 57889999999999999
Q ss_pred CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccc
Q 013951 309 NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (433)
Q Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~ 388 (433)
+++|||++....... +|+++.++. .+|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++
T Consensus 303 g~~fiW~~~~~~~~~------l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 375 (448)
T PLN02562 303 GRPFIWVLNPVWREG------LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA 375 (448)
T ss_pred CCCEEEEEcCCchhh------CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcc
Confidence 999999996532111 777776665 4678888999999999999999999999999999999999999999999
Q ss_pred cccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 389 ADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 389 ~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
+||+.||+++++..|+|+.++ +++.+.+.++|+++++|++++
T Consensus 376 ~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 376 GDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred cchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHH
Confidence 999999999963468887774 578899999999999887554
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.4e-57 Score=436.15 Aligned_cols=402 Identities=27% Similarity=0.430 Sum_probs=299.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCC----CEEEEEECCcchh----hhHHHHHHhhhCCCCeEEEEecCCCccC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHG----AIVTIVTTPVNAA----RFKTVIARAIKSGLQIRLIEIQFPWQEA 76 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (433)
|++.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .++....+....+.+++++.+|.+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3567999999999999999999999999996 7999999886532 3333332211122258898887531
Q ss_pred CCCCCCCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHh
Q 013951 77 GIPEGCENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHH 156 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 156 (433)
++.+.+ .. ...+......+.+.+++++++...++++||+|.+..|+..+|+++|||++.++++++..+..+.
T Consensus 78 -~p~~~e------~~-~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 78 -PPTDAA------GV-EEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred -CCCccc------cH-HHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 222211 11 1122224446677888888873235699999999999999999999999999999999888777
Q ss_pred hhhcc-ccCCC-CCCCCCcccCCCCCCCccccccccCccCCCC--cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHH
Q 013951 157 LLGVS-KVHEN-VTSDSEYFNIPGLPDHIEFTKVQLLISKRDD--DRKELREQILAADKKTYGAIINTFEELESPFIENY 232 (433)
Q Consensus 157 ~~~~~-~~~~~-~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 232 (433)
+++.. ..... ......+..+|+++. ++..+++.+.... .....+....+...+++++++|||.+||+.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 226 (480)
T PLN00164 150 RLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAI 226 (480)
T ss_pred hhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHH
Confidence 65321 11000 010012234788765 5667777644322 11223333344557788999999999999999888
Q ss_pred Hhhc------CCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHH
Q 013951 233 KKAK------QGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLE 306 (433)
Q Consensus 233 ~~~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 306 (433)
+... .++++.|||++...... .....+.++.+||+.++++++|||||||+..++.+++.+++.+|+
T Consensus 227 ~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~ 298 (480)
T PLN00164 227 ADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLE 298 (480)
T ss_pred HhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 7642 25799999997432110 011235689999999998899999999999999999999999999
Q ss_pred hCCCCEEEEEeCCcc-------hhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcC
Q 013951 307 ASNKPFVWVIRGVSK-------LEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAG 379 (433)
Q Consensus 307 ~~~~~~i~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~G 379 (433)
..+++|||++..... ......+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 299 ~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 299 RSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred HcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 999999999975321 0011122 78899888888999999999999999999999999999999999999999
Q ss_pred CcEEecccccccchhHHHhhhhccceEEeeee-----ccCCcccccchhhccccc
Q 013951 380 VQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE-----VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 380 vP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~-----~~~~~~l~~ai~~il~~~ 429 (433)
||||++|+++||+.||+++++++|+|+.++.+ ..+.+.+.++|++++.|+
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG 432 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC
Confidence 99999999999999998775578999998642 358899999999999764
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.6e-57 Score=431.75 Aligned_cols=397 Identities=26% Similarity=0.404 Sum_probs=289.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHH--HHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARL--LAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
.++.||+++|+|++||++|++.||++ |++||++|||++++.+...++.. . .....+++..++ +++|.+.
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~---~~~~~~~~~~~~-----~glp~~~ 76 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-E---KPRRPVDLVFFS-----DGLPKDD 76 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-c---CCCCceEEEECC-----CCCCCCc
Confidence 45679999999999999999999999 56999999999999776544221 1 011235555443 2555542
Q ss_pred CCCCCCCCccHHHHHHHH-HHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhc-
Q 013951 83 ENCDLLPTTDFARFMKSL-HMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGV- 160 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~- 160 (433)
. .+...+...+ ..+.+.+++++++ .+||+||+|.+..|+..+|+++|||.+.+++.++..+....+...
T Consensus 77 ~-------~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 77 P-------RAPETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred c-------cCHHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 1 1222333343 3566778888888 689999999999999999999999999999999888877665432
Q ss_pred cccCCCCCCCCCcccCCCCCCCccccccccCccCCCC-c--HHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcC
Q 013951 161 SKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDD-D--RKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQ 237 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 237 (433)
........+......+|+++. ++.++++.++... . +...+....+....+.++++||+.+||+..++.+++ .
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~- 222 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L- 222 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-
Confidence 111111111112245777764 5556666544322 1 223333444445667899999999999999988766 3
Q ss_pred CcEEEeCcCCCCCC--CCccccccCC--CCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEE
Q 013951 238 GKVWCIGPASLCNK--EPIDKAERGK--TASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFV 313 (433)
Q Consensus 238 ~~~~~vGpl~~~~~--~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 313 (433)
+++++|||++.... ........+. ..+..+.+|.+|++.++++++|||||||....+.+++++++.+|+..+++||
T Consensus 223 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~fl 302 (456)
T PLN02210 223 KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFL 302 (456)
T ss_pred CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 57999999974211 0000000011 1123456799999999888999999999999999999999999999999999
Q ss_pred EEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccch
Q 013951 314 WVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFC 393 (433)
Q Consensus 314 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (433)
|+++...... .++.+.++...++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 303 w~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~ 376 (456)
T PLN02210 303 WVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPI 376 (456)
T ss_pred EEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHH
Confidence 9997542110 2234444443355567799999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhccceEEeeee----ccCCcccccchhhcccccc
Q 013951 394 NEKLIVNVLRIGVSVGVE----VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 394 na~~v~e~~G~G~~l~~~----~~~~~~l~~ai~~il~~~~ 430 (433)
||++++|.+|+|+.++.. .++.++++++|++++.+++
T Consensus 377 na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 377 DARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 999996339999998643 4788999999999997753
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-57 Score=430.42 Aligned_cols=401 Identities=23% Similarity=0.391 Sum_probs=290.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEECCcch-hhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHG--AIVTIVTTPVNA-ARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+.....+......+++|..+|.... .+..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~- 77 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL- 77 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc-
Confidence 457999999999999999999999999998 999999999765 333333322111122589999883211 1110
Q ss_pred CCCCCCCCccHHHHHHHHHHh----HHHHHHHHHhC--CCCC-cEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 013951 83 ENCDLLPTTDFARFMKSLHML----QQPFENLFKEK--TLKP-CCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCH 155 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 155 (433)
.. . ... ...+......+ .+.+.+++++. +.+| ++||+|.+..|+..+|+++|||.+.++++++..+...
T Consensus 78 ~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~ 153 (468)
T PLN02207 78 GG--T-QSV-EAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMM 153 (468)
T ss_pred cc--c-cCH-HHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 00 0 111 12222333333 45566666542 1234 8999999999999999999999999999999887776
Q ss_pred hhhhcc-ccCCCC--CCCCCcccCCCC-CCCccccccccCccCCCCc-HHHHHHHHHHhcccccEEEEcChhhcchHHHH
Q 013951 156 HLLGVS-KVHENV--TSDSEYFNIPGL-PDHIEFTKVQLLISKRDDD-RKELREQILAADKKTYGAIINTFEELESPFIE 230 (433)
Q Consensus 156 ~~~~~~-~~~~~~--~~~~~~~~~p~l-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 230 (433)
.+.+.. ...... +.......+|++ +. ++..+++.++.... +..+. +......+.+++++||+.+||++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 154 QYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDGYDAYV-KLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred HHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCccHHHHH-HHHHhcccCCEEEEEchHHHhHHHHH
Confidence 655321 111111 111133457887 44 67777776553322 33333 33345677889999999999999888
Q ss_pred HHHh-hcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCC
Q 013951 231 NYKK-AKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASN 309 (433)
Q Consensus 231 ~~~~-~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 309 (433)
.++. +..++++.|||++........ ......++++.+||++++++++|||||||...++.+++++++.+|+.++
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 7754 345789999999764321100 0000123679999999988899999999999999999999999999999
Q ss_pred CCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccccc
Q 013951 310 KPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFA 389 (433)
Q Consensus 310 ~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~ 389 (433)
++|||+++..... ...+ +|++|.++.. +|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 305 ~~flW~~r~~~~~--~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~ 380 (468)
T PLN02207 305 YRFLWSLRTEEVT--NDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYA 380 (468)
T ss_pred CcEEEEEeCCCcc--cccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccc
Confidence 9999999853210 0112 7888877654 5667789999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhhccceEEeee-------eccCCcccccchhhccc
Q 013951 390 DQFCNEKLIVNVLRIGVSVGV-------EVDLPITTSNYLCKISC 427 (433)
Q Consensus 390 DQ~~na~~v~e~~G~G~~l~~-------~~~~~~~l~~ai~~il~ 427 (433)
||+.||+++++.+|+|+.+.. ...+.+.++++|+++++
T Consensus 381 DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 381 EQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 999999987555999997742 13488999999999996
No 16
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.8e-57 Score=427.79 Aligned_cols=389 Identities=26% Similarity=0.421 Sum_probs=289.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC-CC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC-EN 84 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 84 (433)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...+++++.++. ++|.+. +.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipd-----glp~~~~~~ 72 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISD-----GYDQGGFSS 72 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCC-----CCCCccccc
Confidence 346999999999999999999999999999999999999765433210 123589988862 565522 21
Q ss_pred CCCCCCccHHHHHHHHH-HhHHHHHHHHHhC--CCCC-cEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhc
Q 013951 85 CDLLPTTDFARFMKSLH-MLQQPFENLFKEK--TLKP-CCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGV 160 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~--~~~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (433)
. .....+..... .+.+.+++++++. ..+| |+||+|.+..|+..+|+++|||++.+++++++.+..+++...
T Consensus 73 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~ 147 (449)
T PLN02173 73 A-----GSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI 147 (449)
T ss_pred c-----cCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh
Confidence 1 12223444433 5677777777753 1255 999999999999999999999999999988887655543211
Q ss_pred cccCCCCCCCCCcccCCCCCCCccccccccCccCCCC----cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhc
Q 013951 161 SKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDD----DRKELREQILAADKKTYGAIINTFEELESPFIENYKKAK 236 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (433)
. . + .....+|+++. ++.++++.++... .....+.+..+...+++++++||+.+||+.+.+.++..
T Consensus 148 ~---~--~--~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 216 (449)
T PLN02173 148 N---N--G--SLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV- 216 (449)
T ss_pred c---c--C--CccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-
Confidence 0 0 1 12334677775 5667777655321 12222323344567788999999999999998887543
Q ss_pred CCcEEEeCcCCCCCC---CC-ccccccCCCC-CCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCC
Q 013951 237 QGKVWCIGPASLCNK---EP-IDKAERGKTA-SIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKP 311 (433)
Q Consensus 237 ~~~~~~vGpl~~~~~---~~-~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 311 (433)
++++.|||++.... .. .......+.. +..++++.+||+.++++++|||||||+...+.+++.+++.+| .+.+
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred -CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 36999999964211 00 0000000000 012446999999999889999999999999999999999999 6778
Q ss_pred EEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccccccc
Q 013951 312 FVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQ 391 (433)
Q Consensus 312 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ 391 (433)
|+|++...... . +|+++.++...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 294 flWvvr~~~~~----~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 294 YLWVVRASEES----K--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred EEEEEeccchh----c--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 99999753211 1 77888777777899999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhccceEEeeeec----cCCcccccchhhcccccc
Q 013951 392 FCNEKLIVNVLRIGVSVGVEV----DLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 392 ~~na~~v~e~~G~G~~l~~~~----~~~~~l~~ai~~il~~~~ 430 (433)
+.||+++++.+|+|+.+..++ .+.+.++++|++++++++
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~ 410 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK 410 (449)
T ss_pred hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh
Confidence 999999964459998886433 478999999999997753
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.8e-56 Score=423.70 Aligned_cols=396 Identities=30% Similarity=0.457 Sum_probs=297.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhh--HHHHHHhhhCCCCeEEEEecCCCccCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARF--KTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+ ........ ...+++++.+|.+..+ +++.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~-~l~~--- 77 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVD-NLVE--- 77 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccc-cCCC---
Confidence 4599999999999999999999999987 9999999988765433 11111110 1124889888854321 2210
Q ss_pred CCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCC-cEEEecchHHHHHHHhhhhc-c
Q 013951 84 NCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVP-RIIFHGFSCFCLFCHHLLGV-S 161 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~-~ 161 (433)
.. ......+......+.+.+++++++...++++||+|.+..|+..+|+++||| .+.++++.++.+..+++++. .
T Consensus 78 -~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 78 -PD---ATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred -CC---ccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 00 111334555666788889999987434789999999999999999999999 57777888777666555432 1
Q ss_pred ccCCC-CCCCCCcccCCCCCCCccccccccCccCCCC---cHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhc-
Q 013951 162 KVHEN-VTSDSEYFNIPGLPDHIEFTKVQLLISKRDD---DRKELREQILAADKKTYGAIINTFEELESPFIENYKKAK- 236 (433)
Q Consensus 162 ~~~~~-~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~- 236 (433)
..... ......+..+|+++. ++.++++.++... .+..+. .......+++++++|||.+||+..++.++..+
T Consensus 154 ~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 154 TVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred cccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHhhcc
Confidence 11111 001112355888875 6777777544321 123333 33334678899999999999999998887642
Q ss_pred -----CCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCC
Q 013951 237 -----QGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKP 311 (433)
Q Consensus 237 -----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 311 (433)
.++++.|||+..... ....++++.+||+.+++++||||||||...++.+++.+++.+|+.++++
T Consensus 230 ~~~~~~~~v~~VGPl~~~~~-----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~ 298 (470)
T PLN03015 230 LNRVMKVPVYPIGPIVRTNV-----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQR 298 (470)
T ss_pred cccccCCceEEecCCCCCcc-----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCc
Confidence 256999999974211 0012457999999998899999999999999999999999999999999
Q ss_pred EEEEEeCCcc--------hhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEE
Q 013951 312 FVWVIRGVSK--------LEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQML 383 (433)
Q Consensus 312 ~i~~~~~~~~--------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v 383 (433)
|||++..... .+....+ +|++|.++..+..+++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 299 FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v 377 (470)
T PLN03015 299 FVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIV 377 (470)
T ss_pred EEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEE
Confidence 9999963210 0011223 889999988888889999999999999999999999999999999999999999
Q ss_pred ecccccccchhHHHhhhhccceEEee----eeccCCcccccchhhccc
Q 013951 384 TWPLFADQFCNEKLIVNVLRIGVSVG----VEVDLPITTSNYLCKISC 427 (433)
Q Consensus 384 ~~P~~~DQ~~na~~v~e~~G~G~~l~----~~~~~~~~l~~ai~~il~ 427 (433)
++|+++||+.||+++++.+|+|+.+. ....+.+.+.++|++++.
T Consensus 378 ~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 378 AWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred ecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 99999999999999966999999995 235788999999999995
No 18
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.1e-56 Score=428.77 Aligned_cols=404 Identities=25% Similarity=0.406 Sum_probs=290.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEECCcchhhh---HHHHHHhhh-CCCCeEEEEecCCCccCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHG--AIVTIVTTPVNAARF---KTVIARAIK-SGLQIRLIEIQFPWQEAGIPE 80 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rG--H~Vt~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 80 (433)
+.||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ......... ...+++++.+|.+. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CC
Confidence 67999999999999999999999999998 889999999775422 111111110 12258999887532 11
Q ss_pred CCCCCCCCCCccHHHHHHH-HHHhHHHHHHHHHhC---CCCC-cEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 013951 81 GCENCDLLPTTDFARFMKS-LHMLQQPFENLFKEK---TLKP-CCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCH 155 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~---~~~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 155 (433)
. .. ...+..+... ...+.+.+.+++.+. ..+| ++||+|.++.|+..+|+++|||++.++++++..+..+
T Consensus 77 ~----~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 77 T----TE--DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c----cc--chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 1 00 0122222222 234455555554331 1234 8999999999999999999999999999999998887
Q ss_pred hhhhccc-c--CC--CCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHH
Q 013951 156 HLLGVSK-V--HE--NVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIE 230 (433)
Q Consensus 156 ~~~~~~~-~--~~--~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 230 (433)
++++... . .. .......+..+|+++.. ++..+++.+.....+...+....+...+++++++||+.+||+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 7664321 1 11 11111123457877311 4556666544433333344444556678889999999999998888
Q ss_pred HHHhh--cCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC
Q 013951 231 NYKKA--KQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS 308 (433)
Q Consensus 231 ~~~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~ 308 (433)
.+... ..++++.|||++....... . .....++++.+|+++++++++|||||||+...+.+++++++.+|+.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~-----~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGD-----D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCcccccccc-----c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 77652 3368999999943221100 0 00124568999999998888999999999889999999999999999
Q ss_pred CCCEEEEEeCCcc---------hhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcC
Q 013951 309 NKPFVWVIRGVSK---------LEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAG 379 (433)
Q Consensus 309 ~~~~i~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~G 379 (433)
+++|||+++.... ......+ +|++|.++.. +|+++.+|+||.+||+|+++++||||||+||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975210 0011122 5788877654 566778999999999999999999999999999999999
Q ss_pred CcEEecccccccchhHH-HhhhhccceEEeee-----------eccCCcccccchhhccc-ccccc
Q 013951 380 VQMLTWPLFADQFCNEK-LIVNVLRIGVSVGV-----------EVDLPITTSNYLCKISC-NSQAQ 432 (433)
Q Consensus 380 vP~v~~P~~~DQ~~na~-~v~e~~G~G~~l~~-----------~~~~~~~l~~ai~~il~-~~~~~ 432 (433)
||||++|+++||+.||+ ++ +++|+|+.++. ..++.+.++++|+++++ |++++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r 445 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMV-EELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVR 445 (481)
T ss_pred CCEEecCccccchhhHHHHH-HHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999995 57 79999999863 35788999999999996 55443
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-55 Score=423.26 Aligned_cols=395 Identities=28% Similarity=0.421 Sum_probs=288.7
Q ss_pred CCCCCcEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCC
Q 013951 3 SEASQVHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPE 80 (433)
Q Consensus 3 ~~~~~~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (433)
+++.+.||+++|+|++||++|++.||++|++| ||+|||++++.+...+++.. ...+++|+.++. +++.
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCC
Confidence 45678999999999999999999999999999 99999999997766544421 123589988873 2333
Q ss_pred CCCCCCCCCCccHHHHHHH-HHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhh
Q 013951 81 GCENCDLLPTTDFARFMKS-LHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLG 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 159 (433)
..... .+...+... .+.+.+.+.+++++...++|+||+|.++.|+..+|+++|||++.++++++..+....++.
T Consensus 76 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 76 ELVRA-----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred ccccc-----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 22111 122233333 335677778888763346899999999999999999999999999999998777665553
Q ss_pred ccccCCCCCC------CCCcccCCCCCCCccccccccCccCCCCc--HHHHHHHHHHhcccccEEEEcChhhcchHHHHH
Q 013951 160 VSKVHENVTS------DSEYFNIPGLPDHIEFTKVQLLISKRDDD--RKELREQILAADKKTYGAIINTFEELESPFIEN 231 (433)
Q Consensus 160 ~~~~~~~~~~------~~~~~~~p~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 231 (433)
.......... +.....+|+++. ++..+++.++.... ....+........++.++++||+.+||+.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 227 (459)
T PLN02448 151 LLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDA 227 (459)
T ss_pred hhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHH
Confidence 2111000010 010113666654 45556665443321 122333334445667899999999999999988
Q ss_pred HHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCC
Q 013951 232 YKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKP 311 (433)
Q Consensus 232 ~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 311 (433)
+...++++++.|||+......... .. .......+.++.+|++.++++++|||||||....+.+.+++++.+|+..+++
T Consensus 228 l~~~~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~ 305 (459)
T PLN02448 228 LKSKFPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVR 305 (459)
T ss_pred HHhhcCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 877777789999999653211100 00 0001112357999999998889999999999988899999999999999999
Q ss_pred EEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccccccc
Q 013951 312 FVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQ 391 (433)
Q Consensus 312 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ 391 (433)
|||++.... .++.++ ..+|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 306 ~lw~~~~~~-----------~~~~~~-~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ 373 (459)
T PLN02448 306 FLWVARGEA-----------SRLKEI-CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ 373 (459)
T ss_pred EEEEEcCch-----------hhHhHh-ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc
Confidence 999876431 112111 13578888999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhccceEEeee-----eccCCcccccchhhccccc
Q 013951 392 FCNEKLIVNVLRIGVSVGV-----EVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 392 ~~na~~v~e~~G~G~~l~~-----~~~~~~~l~~ai~~il~~~ 429 (433)
+.||+++++.+|+|+.+.. ...+.++++++|+++|.++
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred hhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 9999999633688888853 2468899999999999763
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.9e-55 Score=417.76 Aligned_cols=396 Identities=24% Similarity=0.411 Sum_probs=284.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCEN 84 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (433)
.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. +...... ....+++++.++ ++++.+.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCcccc
Confidence 3469999999999999999999999996 699999999985421 1111111 112258888875 256554321
Q ss_pred CCCCCCcc-HHHHHHHHHHhHHHHHHHHHhCC---CCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhc
Q 013951 85 CDLLPTTD-FARFMKSLHMLQQPFENLFKEKT---LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGV 160 (433)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~---~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (433)
.. .+ ...+......+.+.+.+++++.. .++++||+|.+..|+..+|+++|||++.+++++++.+..++++..
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NT----DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cc----ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 11 12 23344445566677777776531 345999999999999999999999999999999998887765542
Q ss_pred cccCCCCCCCCCcccCCCCCCCccccccccCccCCCC----cHHHHHHHHHHhcc--cccEEEEcChhhcchHHHHHHHh
Q 013951 161 SKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDD----DRKELREQILAADK--KTYGAIINTFEELESPFIENYKK 234 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~~ 234 (433)
.. .....+|+++. ++.++++.++... .+...+.+..+... .++++++|||.+||+..++.++.
T Consensus 150 ~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 150 GN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred cC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 10 12335777765 5667777655321 12233333334332 24689999999999999887754
Q ss_pred hcCCcEEEeCcCCCCCCCCccccccCC--CCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCE
Q 013951 235 AKQGKVWCIGPASLCNKEPIDKAERGK--TASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPF 312 (433)
Q Consensus 235 ~~~~~~~~vGpl~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 312 (433)
.+++.|||+......... ..+. ..+..+.++.+||+.+++++||||||||+..++.+++++++.+|+.++.+|
T Consensus 219 ---~~v~~VGPL~~~~~~~~~--~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 293 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGS--ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPF 293 (455)
T ss_pred ---CCEEEEcccCcccccccc--ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCe
Confidence 269999999753210000 0000 001224579999999988899999999999999999999999999999999
Q ss_pred EEEEeCCcch-----hhhhhh-hchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecc
Q 013951 313 VWVIRGVSKL-----EALEKW-LVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWP 386 (433)
Q Consensus 313 i~~~~~~~~~-----~~~~~~-~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P 386 (433)
||++...... .....+ .+|++|.++. .+|.++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 294 lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P 372 (455)
T PLN02152 294 LWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP 372 (455)
T ss_pred EEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc
Confidence 9999753110 000000 0356776554 46667789999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhhhccceEEee--ee-ccCCcccccchhhcccccc
Q 013951 387 LFADQFCNEKLIVNVLRIGVSVG--VE-VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 387 ~~~DQ~~na~~v~e~~G~G~~l~--~~-~~~~~~l~~ai~~il~~~~ 430 (433)
+++||+.||+++++..|+|+.+. .+ ..+.+.++++|+++++|+.
T Consensus 373 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 373 MWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred ccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhH
Confidence 99999999999963346665553 33 3588999999999997653
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.6e-55 Score=422.60 Aligned_cols=408 Identities=25% Similarity=0.402 Sum_probs=281.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCC---CEEEEEECCcchh-hhHHHHHHhhhCCCCeEEEEecCCCccCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHG---AIVTIVTTPVNAA-RFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rG---H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (433)
++.||+++|+|++||++||+.||+.|+.+| +.||++++..+.. ..+...........+++|+.||++. .+..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ----DPPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC----CCcc
Confidence 456999999999999999999999999998 3567777654322 1122222111112259999988542 1211
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhC-------CC-CCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHH
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEK-------TL-KPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLF 153 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 153 (433)
.+... ... ...+......+.+.+.+.++++ +. ++++||+|.+..|+..+|+++|||++.++++++..+.
T Consensus 78 ~~~~~--~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 78 MELFV--KAS-EAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred ccccc--cch-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 11000 001 1122222333333444433321 01 3599999999999999999999999999999998887
Q ss_pred HHhhhhc-cccCC-CC--CCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHH
Q 013951 154 CHHLLGV-SKVHE-NV--TSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFI 229 (433)
Q Consensus 154 ~~~~~~~-~~~~~-~~--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 229 (433)
.+++.+. ..... .. .....+..+|+++.. ++..+++.+.........+....+...+++++++|||.+||+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 7665432 11111 10 010123457887421 445556543322222223334445567788999999999999999
Q ss_pred HHHHhhc--CCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHh
Q 013951 230 ENYKKAK--QGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEA 307 (433)
Q Consensus 230 ~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~ 307 (433)
+.+++.. -+++++|||++...... ... .....+.++.+||+.++++++|||||||+...+.+++.+++.+|+.
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~----~~~-~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRT----SPN-LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred HHHHhhcccCCeeEEecccccccccc----CCC-CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 8886541 15799999997642110 000 0011236799999999888999999999988999999999999999
Q ss_pred CCCCEEEEEeCCcch-hhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecc
Q 013951 308 SNKPFVWVIRGVSKL-EALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWP 386 (433)
Q Consensus 308 ~~~~~i~~~~~~~~~-~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P 386 (433)
++++|||+++..... .....+ +|++|.++..+. .++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred CCCcEEEEEecCcccccchhhh-CChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 999999999753211 001112 788887766443 46679999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhhhccceEEeeee-------ccCCcccccchhhccccc
Q 013951 387 LFADQFCNEKLIVNVLRIGVSVGVE-------VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 387 ~~~DQ~~na~~v~e~~G~G~~l~~~-------~~~~~~l~~ai~~il~~~ 429 (433)
+++||+.||+++++++|+|+.++.. .++.+.+.++|++++.++
T Consensus 386 ~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 9999999997632699999998642 468899999999999764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.7e-50 Score=388.79 Aligned_cols=377 Identities=17% Similarity=0.163 Sum_probs=260.0
Q ss_pred CcEEEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCcc--CCCCC-CC
Q 013951 7 QVHFLLL-PYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQE--AGIPE-GC 82 (433)
Q Consensus 7 ~~~il~~-~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~ 82 (433)
+.||+++ |.++.||+.-+.+|+++|++|||+||++++..... .... ...+++.+.++..... +.... ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4567755 88999999999999999999999999998763210 0000 1224555554321111 00000 00
Q ss_pred CCC-CCCCC-cc-----HHHHHHHHHH--hHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHc-CCCcEEEecchHHHH
Q 013951 83 ENC-DLLPT-TD-----FARFMKSLHM--LQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKF-NVPRIIFHGFSCFCL 152 (433)
Q Consensus 83 ~~~-~~~~~-~~-----~~~~~~~~~~--~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~ 152 (433)
... ..... .. +..+...++. ..+.+.+++++...++|++|+|.+..|+..+|+++ ++|.|.++++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 000 00000 00 1111222221 24566778871127899999999888999999999 999988877654322
Q ss_pred HHHhhhhccccCCCCC-CCCCcccCCCCCCCcccc---ccccCccCC----C-------CcHHHHHHHH--------HHh
Q 013951 153 FCHHLLGVSKVHENVT-SDSEYFNIPGLPDHIEFT---KVQLLISKR----D-------DDRKELREQI--------LAA 209 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~---~~~~~~~~~----~-------~~~~~~~~~~--------~~~ 209 (433)
.. ...+ .+..++++|......+.+ +.++..++. . ....+..++. .+.
T Consensus 173 ~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l 242 (507)
T PHA03392 173 NF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIREL 242 (507)
T ss_pred HH----------HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHH
Confidence 11 1122 456667777544322110 011111000 0 0011111111 122
Q ss_pred cccccEEEEcChhhcchHHHHHHHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCC
Q 013951 210 DKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGS 289 (433)
Q Consensus 210 ~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs 289 (433)
..+...+++|+.+.++.+ +++++++.+|||++.+.+. .+.+++++.+|++.++ +++|||||||
T Consensus 243 ~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~~-~g~V~vS~GS 305 (507)
T PHA03392 243 RNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNST-NGVVYVSFGS 305 (507)
T ss_pred HhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcCC-CcEEEEECCC
Confidence 244567899999999854 7999999999999774321 1236889999999875 4799999999
Q ss_pred CcC---CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecc
Q 013951 290 ICN---LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTH 366 (433)
Q Consensus 290 ~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItH 366 (433)
+.. ++.+.++.+++++++.++++||++++.... ...++|+++.+|+||.+||+|+++++||||
T Consensus 306 ~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~--------------~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItH 371 (507)
T PHA03392 306 SIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA--------------INLPANVLTQKWFPQRAVLKHKNVKAFVTQ 371 (507)
T ss_pred CCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc--------------ccCCCceEEecCCCHHHHhcCCCCCEEEec
Confidence 864 567889999999999999999999864321 012479999999999999999999999999
Q ss_pred cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 367 CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 367 GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
||.||++||+++|||||++|+++||+.||+|+ +++|+|+.+++.+++.++|+++|+++|+|++++
T Consensus 372 GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 372 GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred CCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999 699999999999999999999999999998665
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.6e-50 Score=400.34 Aligned_cols=366 Identities=24% Similarity=0.283 Sum_probs=218.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC---
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC--- 85 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--- 85 (433)
||+++|. +.||+.++..|+++|++|||+||++++..... +... ....+++..++.+.............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888884 88999999999999999999999998763211 1111 11135565555322211111111100
Q ss_pred --CCCCCcc-HHHHHHHHH--------Hh-----HHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchH
Q 013951 86 --DLLPTTD-FARFMKSLH--------ML-----QQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSC 149 (433)
Q Consensus 86 --~~~~~~~-~~~~~~~~~--------~~-----~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 149 (433)
....... +........ .| ...+.+.+++ .++|++|+|.+..|+..+|+.+++|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000000 111111110 01 1223344555 6899999999988999999999999976433221
Q ss_pred HHHHHHhhhhccccCCC-CCCCCCcccCCCCCCCccccccccCccCCC--CcHHHHH-HHHHHh----------------
Q 013951 150 FCLFCHHLLGVSKVHEN-VTSDSEYFNIPGLPDHIEFTKVQLLISKRD--DDRKELR-EQILAA---------------- 209 (433)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~---------------- 209 (433)
.. ..... .+.+..++++|...... .+.+.+..+ ..+.... ......
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~s~~----~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMFSDF----SDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBCCCS----GTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred cc----------hhhhhccCCCCChHHhccccccC----CCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 11 11111 23445566666544321 222222221 0011111 000010
Q ss_pred ------cccccEEEEcChhhcchHHHHHHHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEE
Q 013951 210 ------DKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVV 283 (433)
Q Consensus 210 ------~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 283 (433)
..+...+++|+.+.++ ++++++|++.+||+++...+. .++.++++|++...++++|
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld------~prp~~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLD------FPRPLLPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhccccCc------CCcchhhcccccCcccccccc------------ccccccchhhhccCCCCEE
Confidence 1112234556666655 336677899999999765433 2688999999985567899
Q ss_pred EEeeCCCcC-CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCcee
Q 013951 284 YVCLGSICN-LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGG 362 (433)
Q Consensus 284 ~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 362 (433)
||||||+.. ++.+.++.+++++++.+++|||++++.... + +| +|+++.+|+||.+||+|+++++
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~----~--l~---------~n~~~~~W~PQ~~lL~hp~v~~ 344 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPE----N--LP---------KNVLIVKWLPQNDLLAHPRVKL 344 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGC----H--HH---------TTEEEESS--HHHHHTSTTEEE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccc----c--cc---------ceEEEeccccchhhhhccccee
Confidence 999999986 444458889999999999999999874211 1 33 7999999999999999999999
Q ss_pred eecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 363 FLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 363 ~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
||||||+||+.||+++|||||++|+++||+.||+++ ++.|+|+.+++++++.+.+.++|+++|+|++++
T Consensus 345 fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~ 413 (500)
T PF00201_consen 345 FITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKNDLTEEELRAAIREVLENPSYK 413 (500)
T ss_dssp EEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHH
T ss_pred eeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999 699999999999999999999999999998765
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.3e-42 Score=333.34 Aligned_cols=348 Identities=18% Similarity=0.154 Sum_probs=230.9
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCcc-
Q 013951 14 PYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTD- 92 (433)
Q Consensus 14 ~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 92 (433)
.+|+.||++|+++||++|++|||+|+|++++.+.+.+++. |+.+..++......+.... ........
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 69 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPIDI 69 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHHH
Confidence 5799999999999999999999999999999666655543 7888877642111111111 00001111
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCC
Q 013951 93 FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDSE 172 (433)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (433)
...+......+.+.+.+.+++ .+||+||+|.++.++..+|+++|||+|.+++.+.... .++ ...
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~---------~~~- 133 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFE---------EMV- 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccc---------ccc-
Confidence 222222223344556666676 8999999999888999999999999998854432110 000 000
Q ss_pred cccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcc------------cccEEEEcChhhcchHHHHHHHhhcCCcE
Q 013951 173 YFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADK------------KTYGAIINTFEELESPFIENYKKAKQGKV 240 (433)
Q Consensus 173 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 240 (433)
+...+.+.. ....... ....+.+..+..+.... .....+..+.+.++ ..+..+++++
T Consensus 134 ~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~-----~~~~~~~~~~ 202 (392)
T TIGR01426 134 SPAGEGSAE-----EGAIAER-GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQ-----PAGETFDDSF 202 (392)
T ss_pred cccchhhhh-----hhccccc-hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhC-----CCccccCCCe
Confidence 000000000 0000000 00001111111111110 01112223323333 2335678899
Q ss_pred EEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCc
Q 013951 241 WCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVS 320 (433)
Q Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 320 (433)
.++||+..... +...|....+++++||||+||+.....+.+..+++++++.+.+++|..+.+.
T Consensus 203 ~~~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 203 TFVGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred EEECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 99999754321 1123665555678999999998776667888899999999999999987653
Q ss_pred chhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhh
Q 013951 321 KLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVN 400 (433)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e 400 (433)
...... ..++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||.++ +
T Consensus 266 ~~~~~~-----------~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~ 331 (392)
T TIGR01426 266 DPADLG-----------ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-A 331 (392)
T ss_pred ChhHhc-----------cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-H
Confidence 211111 12479999999999999999998 999999999999999999999999999999999999 6
Q ss_pred hccceEEeeeeccCCcccccchhhccccccc
Q 013951 401 VLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 401 ~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
+.|+|+.+...+++.+.+.++|+++|+|+++
T Consensus 332 ~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~ 362 (392)
T TIGR01426 332 ELGLGRHLPPEEVTAEKLREAVLAVLSDPRY 362 (392)
T ss_pred HCCCEEEeccccCCHHHHHHHHHHHhcCHHH
Confidence 9999999998889999999999999998754
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.2e-42 Score=333.46 Aligned_cols=355 Identities=13% Similarity=0.025 Sum_probs=230.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|++.|+.||++|+++||++|++|||+|+|++++.....+++ .|++|..++.................
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 589999999999999999999999999999999999955443332 26888877532111000000000000
Q ss_pred CCCcc-H----HHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccc
Q 013951 88 LPTTD-F----ARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSK 162 (433)
Q Consensus 88 ~~~~~-~----~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (433)
..... . ..+......+...+.+.+++ ++||+||+|.+.+++..+|+++|||++.+++.+......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--------
Confidence 00011 1 11222223444555556666 899999999988899999999999999988765432100
Q ss_pred cCCCCCCCCCcccCCCCCCCccccccccCccCCC----CcHHHHHHHHHHhccc---------ccEEEEcChhhcchHHH
Q 013951 163 VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRD----DDRKELREQILAADKK---------TYGAIINTFEELESPFI 229 (433)
Q Consensus 163 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~s~~~l~~~~~ 229 (433)
..+ |. .. . . ......... ..........+....- ....+....+. +
T Consensus 142 --------~~~---~~-~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~-----~ 200 (401)
T cd03784 142 --------FPP---PL-GR-A-N--LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPA-----V 200 (401)
T ss_pred --------CCC---cc-ch-H-H--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcc-----c
Confidence 000 00 00 0 0 000000000 0011111111111110 00111111111 1
Q ss_pred HHHHhhcCCcEEEeC-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCC-hhhHHHHHHHHHh
Q 013951 230 ENYKKAKQGKVWCIG-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLP-SSQLIELGLGLEA 307 (433)
Q Consensus 230 ~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~ 307 (433)
.....+++++..++| ++..... ....+.++..|++.. +++||||+||+.... ......++++++.
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~ 267 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPY-----------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVAT 267 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCC-----------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHH
Confidence 112244556666665 3322211 112366788888764 569999999998744 4566778999999
Q ss_pred CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc
Q 013951 308 SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 387 (433)
Q Consensus 308 ~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~ 387 (433)
.+.++||+++...... ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|.
T Consensus 268 ~~~~~i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 268 LGQRAILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred cCCeEEEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCC
Confidence 9999999998754210 112479999999999999999998 9999999999999999999999999
Q ss_pred ccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 388 FADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 388 ~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
..||+.||+++ +++|+|+.++..+++.+.+.++|+++|+++..
T Consensus 333 ~~dQ~~~a~~~-~~~G~g~~l~~~~~~~~~l~~al~~~l~~~~~ 375 (401)
T cd03784 333 FGDQPFWAARV-AELGAGPALDPRELTAERLAAALRRLLDPPSR 375 (401)
T ss_pred CCCcHHHHHHH-HHCCCCCCCCcccCCHHHHHHHHHHHhCHHHH
Confidence 99999999999 69999999988888999999999999987643
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1e-40 Score=316.16 Aligned_cols=364 Identities=17% Similarity=0.164 Sum_probs=226.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
++||+|+..|++||++|+++||++|.++||+|+|++++... +.++.+ ++.|..++... .+..... .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~----~~ve~a-----g~~f~~~~~~~----~~~~~~~-~ 66 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFK----EFVEAA-----GLAFVAYPIRD----SELATED-G 66 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHH----HHHHHh-----CcceeeccccC----Chhhhhh-h
Confidence 36899999999999999999999999999999999999444 444443 66676665320 0011110 0
Q ss_pred CCCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 87 LLPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
...... +......+......+.+.+.+ ..||+++.|.....+ .+++..++|++................ ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 138 (406)
T COG1819 67 KFAGVKSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLP-----LP 138 (406)
T ss_pred hhhccchhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccC-----cc
Confidence 111111 221333333455667778888 899999999876655 899999999987544332221100000 00
Q ss_pred CCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHh-c---ccccEEEEcChhhcchHHHHHHH---hhcCC
Q 013951 166 NVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAA-D---KKTYGAIINTFEELESPFIENYK---KAKQG 238 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~l~~~~~~~~~---~~~~~ 238 (433)
..... .....+... ...+...+..............+.. . .+...-+..+-..++..+.+... ...|.
T Consensus 139 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (406)
T COG1819 139 PVGIA-GKLPIPLYP----LPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPF 213 (406)
T ss_pred ccccc-ccccccccc----cChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCC
Confidence 00000 000000000 0000000000000000000000000 0 00000001111111111111000 12334
Q ss_pred cEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeC
Q 013951 239 KVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRG 318 (433)
Q Consensus 239 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 318 (433)
...++||+.... ..+...|.. .++++||+|+||.... .+.++.+++++++++.++|...+.
T Consensus 214 ~~~~~~~~~~~~----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 214 IGPYIGPLLGEA----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred CcCccccccccc----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 455566654432 333444432 3366999999999877 888889999999999999999977
Q ss_pred CcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHh
Q 013951 319 VSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLI 398 (433)
Q Consensus 319 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 398 (433)
... ... ..++|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.++
T Consensus 275 -~~~-~~~-----------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 275 -ARD-TLV-----------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred -ccc-ccc-----------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 221 111 13579999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 399 VNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 399 ~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
|++|+|+.++++.++.+.++++|+++|+|++++
T Consensus 340 -e~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~ 372 (406)
T COG1819 340 -EELGAGIALPFEELTEERLRAAVNEVLADDSYR 372 (406)
T ss_pred -HHcCCceecCcccCCHHHHHHHHHHHhcCHHHH
Confidence 799999999999999999999999999998765
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.8e-41 Score=332.96 Aligned_cols=387 Identities=30% Similarity=0.403 Sum_probs=230.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEE---EEecCCCccCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRL---IEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~ 83 (433)
..+++++++|+.||++|+..+|+.|+++||+||++++..+....... . ....+.. ..++.....+.++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c----cceeeeeeecChHHhhhhhhhhccchH
Confidence 45788888899999999999999999999999999988654432110 0 0000111 11111000011222111
Q ss_pred CCCCCCCcc-HHHHHHHHHHhHHH-HHHHHHhCCCCCcEEEECCCCcchHHHHHHcC-CCcEEEecchHHHHHHHhhhhc
Q 013951 84 NCDLLPTTD-FARFMKSLHMLQQP-FENLFKEKTLKPCCIISDMCFPWTVDTAAKFN-VPRIIFHGFSCFCLFCHHLLGV 160 (433)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~-l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~ 160 (433)
... ..... ...+...+...... ..........++|++|+|.+..+...++.... ++...+.+..+.......+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~--- 155 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP--- 155 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc---
Confidence 100 00000 11222222222222 22222221134999999998666666776664 8877776666554332211
Q ss_pred cccCCCCCCCCCcccCCCCCCCcc-----ccc-------cccCccCCC----CcHHHHHHHHHHhc----ccccEEEEcC
Q 013951 161 SKVHENVTSDSEYFNIPGLPDHIE-----FTK-------VQLLISKRD----DDRKELREQILAAD----KKTYGAIINT 220 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~l~~~~~-----~~~-------~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~s 220 (433)
....++|....... ... ..+..+... .............. .....++.++
T Consensus 156 ----------~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 225 (496)
T KOG1192|consen 156 ----------SPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA 225 (496)
T ss_pred ----------CcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC
Confidence 11112332211000 000 000000000 00000111000000 0111223333
Q ss_pred -hhhcchHHHHHH-HhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCC--eEEEEeeCCCc---CC
Q 013951 221 -FEELESPFIENY-KKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPS--SVVYVCLGSIC---NL 293 (433)
Q Consensus 221 -~~~l~~~~~~~~-~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~ 293 (433)
+..++......+ +++..+++++|||+........ .....+|++..+.. ++|||||||+. .+
T Consensus 226 ~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 226 SFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred eEEEEccCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 444444333223 3445689999999987632210 11344555554443 79999999999 68
Q ss_pred ChhhHHHHHHHHHhC-CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhh-hcCCCceeeecccchhh
Q 013951 294 PSSQLIELGLGLEAS-NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLI-LSHPAVGGFLTHCGWNS 371 (433)
Q Consensus 294 ~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~ItHGG~gs 371 (433)
+.+....++.+++.. +++|+|++....... +++++..+ ...||...+|+||.++ |+|+++++||||||+||
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 999999999999999 888999998764321 11222111 2468999999999998 59999999999999999
Q ss_pred HHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 372 SLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 372 ~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
++|++++|||||++|+++||+.||+++ ++.|.|..+.+.+++.+.+.+++.+++++++++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i-~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~ 426 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLL-VRHGGGGVLDKRDLVSEELLEAIKEILENEEYK 426 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHH-HhCCCEEEEehhhcCcHHHHHHHHHHHcChHHH
Confidence 999999999999999999999999999 599999888888777777999999999887654
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=4.8e-26 Score=213.35 Aligned_cols=313 Identities=17% Similarity=0.106 Sum_probs=196.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+||++.+.++.||++|.++||++|.++||+|.|+++....+. +.+ ...++.+..++.. ++. .
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~-----~~~g~~~~~~~~~----~l~----~--- 63 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TII-----EKENIPYYSISSG----KLR----R--- 63 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccC-----cccCCcEEEEecc----CcC----C---
Confidence 489999999999999999999999999999999997754321 111 2225666665420 111 1
Q ss_pred CCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 88 LPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
..... +........ ..-...+++++ .+||+||+..-.. .+..+|..+++|++.....
T Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n----------------- 123 (352)
T PRK12446 64 YFDLKNIKDPFLVMK-GVMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD----------------- 123 (352)
T ss_pred CchHHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC-----------------
Confidence 00111 111111111 22234456788 8999999976443 4688999999999874221
Q ss_pred CCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcC-CcEEEe
Q 013951 165 ENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQ-GKVWCI 243 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~v 243 (433)
..|++. .+....+.+ .+..+++.. ...++ .++.++
T Consensus 124 ----------~~~g~~-------------------nr~~~~~a~-------~v~~~f~~~--------~~~~~~~k~~~t 159 (352)
T PRK12446 124 ----------MTPGLA-------------------NKIALRFAS-------KIFVTFEEA--------AKHLPKEKVIYT 159 (352)
T ss_pred ----------CCccHH-------------------HHHHHHhhC-------EEEEEccch--------hhhCCCCCeEEE
Confidence 122221 112211111 122223211 12222 478899
Q ss_pred CcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCCh-hhHHHHHHHHHhCCCCEEEEEeCCcch
Q 013951 244 GPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPS-SQLIELGLGLEASNKPFVWVIRGVSKL 322 (433)
Q Consensus 244 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~ 322 (433)
|+-..+.-.. .......+.+.-.+++++|+|+.||...... +.+..++..+. .+.+++|.+|.....
T Consensus 160 G~Pvr~~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~ 227 (352)
T PRK12446 160 GSPVREEVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNLD 227 (352)
T ss_pred CCcCCccccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchHH
Confidence 9433321100 0111222223323446799999999975332 22223333332 247889988865311
Q ss_pred hhhhhhhchhhHHHHhCCCCeEEeCcc-c-HhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccc-----cccchhH
Q 013951 323 EALEKWLVQENFEERIKGRGLLIRGWA-P-QVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF-----ADQFCNE 395 (433)
Q Consensus 323 ~~~~~~~~p~~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na 395 (433)
+.. .. ..++.+.+|+ + -.++|+++++ +|||||.+|+.|++++|+|+|++|+. .||..||
T Consensus 228 ---------~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na 293 (352)
T PRK12446 228 ---------DSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNA 293 (352)
T ss_pred ---------HHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHH
Confidence 101 01 1355666777 4 4568999998 99999999999999999999999985 4899999
Q ss_pred HHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 396 KLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 396 ~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
..+ ++.|+|..+..++++.+.+.++|.++++|+
T Consensus 294 ~~l-~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 294 ESF-ERQGYASVLYEEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HHH-HHCCCEEEcchhcCCHHHHHHHHHHHHcCH
Confidence 999 599999999988999999999999999875
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=9.8e-26 Score=210.64 Aligned_cols=305 Identities=18% Similarity=0.195 Sum_probs=192.3
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 8 VHFLLLPYL-APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 8 ~~il~~~~~-~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
+||+|...+ +.||+..+++||++| |||+|+|++.....+.+++ .+....++. +...... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~-~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPG------LGPIQEN-G 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccC------ceEeccC-C
Confidence 477777776 889999999999999 6999999998844332211 133443321 1111100 0
Q ss_pred CCCCcc-HHHH---HHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccc
Q 013951 87 LLPTTD-FARF---MKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSK 162 (433)
Q Consensus 87 ~~~~~~-~~~~---~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (433)
...... .... ..........+.+.+++ .+||+||+|. .+.+..+|+..|||++.+.........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~--------- 129 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHP--------- 129 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccc---------
Confidence 111111 1111 11223444556677788 8999999995 445678999999999988666543210
Q ss_pred cCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHh--cccccEEEEcChhhcchHHHHHHHhhcCCcE
Q 013951 163 VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAA--DKKTYGAIINTFEELESPFIENYKKAKQGKV 240 (433)
Q Consensus 163 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 240 (433)
...++. ...+..+..+.... .......+.-++. .. .....+.
T Consensus 130 ----------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~ 173 (318)
T PF13528_consen 130 ----------NFWLPW-----------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRV 173 (318)
T ss_pred ----------cCCcch-----------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccc
Confidence 000000 00022222222221 1222222222222 11 1111346
Q ss_pred EEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCC-CCEEEEEeCC
Q 013951 241 WCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASN-KPFVWVIRGV 319 (433)
Q Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~ 319 (433)
.++||+..+.... .-. .+++.|+|++|..... .++++++..+ ..+++. +..
T Consensus 174 ~~~~p~~~~~~~~-------------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~ 225 (318)
T PF13528_consen 174 PFVGPIIRPEIRE-------------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN 225 (318)
T ss_pred cccCchhcccccc-------------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC
Confidence 6788875432211 001 1234799999987442 6778888877 455555 544
Q ss_pred cchhhhhhhhchhhHHHHhCCCCeEEeCcc--cHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc--ccccchhH
Q 013951 320 SKLEALEKWLVQENFEERIKGRGLLIRGWA--PQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL--FADQFCNE 395 (433)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~--~~DQ~~na 395 (433)
.. .+ ..+|+.+.++. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..+|..||
T Consensus 226 ~~--------~~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 226 AA--------DP-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred cc--------cc-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 21 11 25799998876 45679988988 9999999999999999999999999 78999999
Q ss_pred HHhhhhccceEEeeeeccCCcccccchhhc
Q 013951 396 KLIVNVLRIGVSVGVEVDLPITTSNYLCKI 425 (433)
Q Consensus 396 ~~v~e~~G~G~~l~~~~~~~~~l~~ai~~i 425 (433)
+++ ++.|+|+.++.++++++.|+++|+++
T Consensus 289 ~~l-~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKL-EELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHH-HHCCCeEEcccccCCHHHHHHHHhcC
Confidence 999 79999999999999999999998875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=1.6e-23 Score=195.17 Aligned_cols=305 Identities=15% Similarity=0.067 Sum_probs=174.7
Q ss_pred EEEEEcCCCC-CChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeE-EEEecCCCccCCCCCCCCCCC
Q 013951 9 HFLLLPYLAP-GHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIR-LIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 9 ~il~~~~~~~-GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 86 (433)
||++...+.. ||+.|.++||++|.+ ||+|+|+++......+++. ++. +..++. +... ...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~------~~~~--~~~ 62 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPG------IKLK--GED 62 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCC------ceEe--ecC
Confidence 5777666655 999999999999999 9999999877522222221 222 222221 0000 000
Q ss_pred CCCCcc-HHHHHH--HH-HHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccc
Q 013951 87 LLPTTD-FARFMK--SL-HMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSK 162 (433)
Q Consensus 87 ~~~~~~-~~~~~~--~~-~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (433)
. ..+ ...+.. .. ........+++++ .+||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 63 ~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 63 G--KVNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred C--cCcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 0 011 111110 11 1223345678888 899999999 56667889999999999875432110
Q ss_pred cCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhc-ccccEEEEcChhhcchHHHHHHHhhcCCcEE
Q 013951 163 VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAAD-KKTYGAIINTFEELESPFIENYKKAKQGKVW 241 (433)
Q Consensus 163 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 241 (433)
.|+... ......+.....+ .....+.+..+..... ..|+...
T Consensus 127 -------------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~ 169 (321)
T TIGR00661 127 -------------YPLKTD----------------LIVYPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIK 169 (321)
T ss_pred -------------CCcccc----------------hhHHHHHHHHHHhccccceEeeecCCCCCC--------CCccccc
Confidence 011000 0111111111111 1122222222221110 0010000
Q ss_pred -EeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCC-CEEEEEeCC
Q 013951 242 -CIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNK-PFVWVIRGV 319 (433)
Q Consensus 242 -~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~ 319 (433)
.-+|.. ..+..++.... ++.|+|.+|+.. ...+++++++.+. .++ ++..
T Consensus 170 ~~~~~~~-------------------~~~~~~~~~~~--~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i--~~~~ 220 (321)
T TIGR00661 170 NMEGPLI-------------------RYDVDDVDNYG--EDYILVYIGFEY------RYKILELLGKIANVKFV--CYSY 220 (321)
T ss_pred cCCCccc-------------------chhhhccccCC--CCcEEEECCcCC------HHHHHHHHHhCCCeEEE--EeCC
Confidence 001110 11122222222 346778888753 3556777877654 333 2222
Q ss_pred cchhhhhhhhchhhHHHHhCCCCeEEeCccc--HhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccccc--ccchhH
Q 013951 320 SKLEALEKWLVQENFEERIKGRGLLIRGWAP--QVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFA--DQFCNE 395 (433)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p--q~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~--DQ~~na 395 (433)
.. ..+. ..+|+.+.+|.| ..+.|+.+++ +|||||.+|++||+++|+|++++|..+ ||..||
T Consensus 221 ~~--------~~~~-----~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na 285 (321)
T TIGR00661 221 EV--------AKNS-----YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNA 285 (321)
T ss_pred CC--------Cccc-----cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHH
Confidence 11 1111 136899889997 4567788888 999999999999999999999999865 899999
Q ss_pred HHhhhhccceEEeeeeccCCcccccchhhcccccccc
Q 013951 396 KLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 396 ~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~~ 432 (433)
+.+ ++.|+|+.++..++ .+.+++.++++|+.++
T Consensus 286 ~~l-~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 286 VKL-EDLGCGIALEYKEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred HHH-HHCCCEEEcChhhH---HHHHHHHhcccccccc
Confidence 999 59999999988776 6677787888887653
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4.8e-22 Score=183.98 Aligned_cols=312 Identities=18% Similarity=0.159 Sum_probs=196.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGA-IVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+.... ...++.+..|+.. .+.. ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~----~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRR----KG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----cccc----cC
Confidence 47899999999999999999999999999 5888866543322111 1225666666531 1111 00
Q ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECC-CC-cchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 87 LLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDM-CF-PWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~-~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
... .+...+.. ........+++++ .+||+||.-. +. ..+..+|..+|||++..
T Consensus 66 ~~~--~~~~~~~~-~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih-------------------- 120 (357)
T COG0707 66 SLK--LLKAPFKL-LKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH-------------------- 120 (357)
T ss_pred cHH--HHHHHHHH-HHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEEE--------------------
Confidence 000 01111111 1233466788888 9999999843 33 37788888999999883
Q ss_pred CCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEeC
Q 013951 165 ENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIG 244 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 244 (433)
+....||+.. ++... ....+..+++..+. ..-+.+++.+|
T Consensus 121 -------Eqn~~~G~an-------------------k~~~~-------~a~~V~~~f~~~~~-------~~~~~~~~~tG 160 (357)
T COG0707 121 -------EQNAVPGLAN-------------------KILSK-------FAKKVASAFPKLEA-------GVKPENVVVTG 160 (357)
T ss_pred -------ecCCCcchhH-------------------HHhHH-------hhceeeeccccccc-------cCCCCceEEec
Confidence 2333444432 11111 11112233332110 01113588888
Q ss_pred -cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHH-HHHHHhC--CCCEEEEEeCCc
Q 013951 245 -PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIEL-GLGLEAS--NKPFVWVIRGVS 320 (433)
Q Consensus 245 -pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~-~~al~~~--~~~~i~~~~~~~ 320 (433)
|+...-.. .+..-..+.... ++++|+|+.||+... .++.+ .+++... +..+++.++...
T Consensus 161 ~Pvr~~~~~-------------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~---~ln~~v~~~~~~l~~~~~v~~~~G~~~ 223 (357)
T COG0707 161 IPVRPEFEE-------------LPAAEVRKDGRL-DKKTILVTGGSQGAK---ALNDLVPEALAKLANRIQVIHQTGKND 223 (357)
T ss_pred CcccHHhhc-------------cchhhhhhhccC-CCcEEEEECCcchhH---HHHHHHHHHHHHhhhCeEEEEEcCcch
Confidence 66432111 011111121111 456999999998652 23433 3333333 467777777764
Q ss_pred chhhhhhhhchhhHHHHhCCCC-eEEeCcccH-hhhhcCCCceeeecccchhhHHHHHHcCCcEEecccc----cccchh
Q 013951 321 KLEALEKWLVQENFEERIKGRG-LLIRGWAPQ-VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF----ADQFCN 394 (433)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~n-v~~~~~~pq-~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~----~DQ~~n 394 (433)
.. .........| +.+.+|..+ ..+|+.+++ +||++|.+|+.|+++.|+|+|.+|.- .||..|
T Consensus 224 ~~----------~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~N 291 (357)
T COG0707 224 LE----------ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYN 291 (357)
T ss_pred HH----------HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHH
Confidence 21 1112222334 778888876 458888888 99999999999999999999999973 489999
Q ss_pred HHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 395 EKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 395 a~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
|+.+ |+.|.|..++..+++.+.+.+.|.++++++
T Consensus 292 A~~l-~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 292 AKFL-EKAGAALVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred HHHH-HhCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 9999 699999999999999999999999999874
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=1.4e-17 Score=158.28 Aligned_cols=315 Identities=14% Similarity=0.092 Sum_probs=187.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|+..+..||...++.||++|.++||+|++++.+.... .... ...++++..++.+ +.. .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~-----~~~g~~~~~~~~~----~~~-------~ 63 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLV-----PKAGIEFHFIPSG----GLR-------R 63 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhcc-----ccCCCcEEEEecc----CcC-------C
Confidence 58999999999999999999999999999999999864211 1111 1124555555421 110 0
Q ss_pred CCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 88 LPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF--PWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
..... +.... ........+.+++++ .+||+|++.... ..+..+++..++|+|..... .
T Consensus 64 ~~~~~~l~~~~-~~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~--------------- 124 (357)
T PRK00726 64 KGSLANLKAPF-KLLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A--------------- 124 (357)
T ss_pred CChHHHHHHHH-HHHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C---------------
Confidence 00111 11111 112334456778888 899999999632 24556677889999863110 0
Q ss_pred CCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEeC
Q 013951 165 ENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIG 244 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 244 (433)
.++. ..++... ..+.++..+...+ . ..-+.++.++|
T Consensus 125 -----------~~~~-------------------~~r~~~~------~~d~ii~~~~~~~-----~---~~~~~~i~vi~ 160 (357)
T PRK00726 125 -----------VPGL-------------------ANKLLAR------FAKKVATAFPGAF-----P---EFFKPKAVVTG 160 (357)
T ss_pred -----------CccH-------------------HHHHHHH------HhchheECchhhh-----h---ccCCCCEEEEC
Confidence 0000 1111111 1122222221111 0 12235788888
Q ss_pred cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHH-HHHHHHhCCC--CEEEEEeCCcc
Q 013951 245 PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIE-LGLGLEASNK--PFVWVIRGVSK 321 (433)
Q Consensus 245 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~ 321 (433)
+-....... +.....-+...++..+|++..|+.. ...+.. +.+++.+... .++|.+|.+..
T Consensus 161 n~v~~~~~~-------------~~~~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~ 224 (357)
T PRK00726 161 NPVREEILA-------------LAAPPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL 224 (357)
T ss_pred CCCChHhhc-------------ccchhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH
Confidence 443221100 0000001111123446766555542 222333 3366655433 45566666543
Q ss_pred hhhhhhhhchhhHHHHhCCCCeEEeCcc-cHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc----ccccchhHH
Q 013951 322 LEALEKWLVQENFEERIKGRGLLIRGWA-PQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FADQFCNEK 396 (433)
Q Consensus 322 ~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~ 396 (433)
...+ +.. . ..-++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+.
T Consensus 225 ~~~~------~~~--~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 293 (357)
T PRK00726 225 EEVR------AAY--A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANAR 293 (357)
T ss_pred HHHH------HHh--h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHH
Confidence 2111 111 1 22247888998 45689999999 9999999999999999999999997 468999999
Q ss_pred HhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 397 LIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 397 ~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
.+ .+.|.|..++.++++.+.+.++|.++++|++.
T Consensus 294 ~i-~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 327 (357)
T PRK00726 294 AL-VDAGAALLIPQSDLTPEKLAEKLLELLSDPER 327 (357)
T ss_pred HH-HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHH
Confidence 99 59999999998888899999999999998754
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=9e-17 Score=152.30 Aligned_cols=317 Identities=16% Similarity=0.129 Sum_probs=186.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
||++...++.||...++.||+.|.++||+|++++...... .... ...++++..++.. .... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~--~~~~-----~~~~~~~~~~~~~----~~~~-------~ 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE--ARLV-----PKAGIPLHTIPVG----GLRR-------K 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch--hhcc-----cccCCceEEEEec----CcCC-------C
Confidence 6899999999999999999999999999999998764211 1111 1124556555421 0100 0
Q ss_pred CCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC--cchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 89 PTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF--PWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
.... +..... .......+.+++++ .+||+|++..-. ..+..+|...++|++..... .
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~---------------- 122 (350)
T cd03785 63 GSLKKLKAPFK-LLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A---------------- 122 (350)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C----------------
Confidence 0011 111111 12233456777888 899999987533 24567788889998753110 0
Q ss_pred CCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEeCc
Q 013951 166 NVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGP 245 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 245 (433)
.++. ..++.. ...+.++..+....+. ..+.++.++|.
T Consensus 123 ----------~~~~-------------------~~~~~~------~~~~~vi~~s~~~~~~--------~~~~~~~~i~n 159 (350)
T cd03785 123 ----------VPGL-------------------ANRLLA------RFADRVALSFPETAKY--------FPKDKAVVTGN 159 (350)
T ss_pred ----------CccH-------------------HHHHHH------HhhCEEEEcchhhhhc--------CCCCcEEEECC
Confidence 0000 111111 1133344433222211 11356778884
Q ss_pred CCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCCh-hhHHHHHHHHHhCCCCEEEEEeCCcchhh
Q 013951 246 ASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPS-SQLIELGLGLEASNKPFVWVIRGVSKLEA 324 (433)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 324 (433)
-....... ..+. ...+...+++.+|++..|+...... +.+..++..+...+..+++.+|.+.. +.
T Consensus 160 ~v~~~~~~------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~-~~ 225 (350)
T cd03785 160 PVREEILA------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL-EE 225 (350)
T ss_pred CCchHHhh------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH-HH
Confidence 32221100 0001 1122222334466666666532111 11222333333334455666666522 11
Q ss_pred hhhhhchhhHHHHhCCCCeEEeCcc-cHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc----ccccchhHHHhh
Q 013951 325 LEKWLVQENFEERIKGRGLLIRGWA-PQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FADQFCNEKLIV 399 (433)
Q Consensus 325 ~~~~~~p~~~~~~~~~~nv~~~~~~-pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~ 399 (433)
+.+.. +.. .+|+.+.+|+ ...++|+.+++ +|+++|.+++.||+.+|+|+|++|. ..+|..|+..+
T Consensus 226 -----l~~~~-~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l- 295 (350)
T cd03785 226 -----VKKAY-EEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL- 295 (350)
T ss_pred -----HHHHH-hcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH-
Confidence 11111 111 4789999998 55679999998 9999999999999999999999986 45788999999
Q ss_pred hhccceEEeeeeccCCcccccchhhcccccc
Q 013951 400 NVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 400 e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.+.|.|..++..+.+.+.+.++|.++++|++
T Consensus 296 ~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 296 VKAGAAVLIPQEELTPERLAAALLELLSDPE 326 (350)
T ss_pred HhCCCEEEEecCCCCHHHHHHHHHHHhcCHH
Confidence 4999999998776789999999999998764
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=4.4e-15 Score=140.63 Aligned_cols=311 Identities=16% Similarity=0.138 Sum_probs=172.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
||+|++.+..||+.....||++|.++||+|++++.+.... .... ...++++..++.. . .. ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~-------~-~~---~~ 63 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG-------G-LR---RK 63 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc-------C-cC---CC
Confidence 7999999999999988899999999999999998643211 0110 1124566555421 0 00 00
Q ss_pred CCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 89 PTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
.... +...... ......+.+++++ .+||+|++..... .+..+++..++|++..... .
T Consensus 64 ~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-~---------------- 123 (348)
T TIGR01133 64 GSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-A---------------- 123 (348)
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-C----------------
Confidence 0111 1111111 2233466778888 8999999975432 3455678889998742100 0
Q ss_pred CCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEeC-
Q 013951 166 NVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIG- 244 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG- 244 (433)
.++. ..++.. +..+.++..+...-+ .+ ...+||
T Consensus 124 ----------~~~~-------------------~~~~~~------~~~d~ii~~~~~~~~---------~~--~~~~i~n 157 (348)
T TIGR01133 124 ----------VPGL-------------------TNKLLS------RFAKKVLISFPGAKD---------HF--EAVLVGN 157 (348)
T ss_pred ----------CccH-------------------HHHHHH------HHhCeeEECchhHhh---------cC--CceEEcC
Confidence 0000 111111 113333333322111 01 225566
Q ss_pred cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHH-HHHHHH---hCCCCEEEEEeCCc
Q 013951 245 PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIE-LGLGLE---ASNKPFVWVIRGVS 320 (433)
Q Consensus 245 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~-~~~al~---~~~~~~i~~~~~~~ 320 (433)
|+....... +.. .+.+.-.+++.+|.+..|+... +.+.. +.++++ +.+.++++..++..
T Consensus 158 ~v~~~~~~~-------------~~~-~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~l~~~~~~~~~~~g~~~ 220 (348)
T TIGR01133 158 PVRQEIRSL-------------PVP-RERFGLREGKPTILVLGGSQGA---KILNELVPKALAKLAEKGIQIVHQTGKND 220 (348)
T ss_pred CcCHHHhcc-------------cch-hhhcCCCCCCeEEEEECCchhH---HHHHHHHHHHHHHHhhcCcEEEEECCcch
Confidence 331110000 000 0112112223355444455432 22222 334444 33456665444432
Q ss_pred chhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccc---cccchhHHH
Q 013951 321 KLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF---ADQFCNEKL 397 (433)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~ 397 (433)
. +.++ +... ...-.++....+-+-.++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..
T Consensus 221 ~-~~l~-----~~~~-~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 291 (348)
T TIGR01133 221 L-EKVK-----NVYQ-ELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKF 291 (348)
T ss_pred H-HHHH-----HHHh-hCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHH
Confidence 2 1111 1111 111112221112255778999998 99999988999999999999999863 467889999
Q ss_pred hhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 398 IVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 398 v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+ ++.|.|..++..+.+.+.+.++|.++++|++
T Consensus 292 i-~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 292 L-EDLGAGLVIRQKELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred H-HHCCCEEEEecccCCHHHHHHHHHHHHcCHH
Confidence 9 5999999988877789999999999998875
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=4.6e-15 Score=134.77 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=77.3
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHhC--CCCEEEEEeCCcchhhhhhhhchhhHHHH-hCCCCeEEeCcccHh-hhhc
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEAS--NKPFVWVIRGVSKLEALEKWLVQENFEER-IKGRGLLIRGWAPQV-LILS 356 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq~-~lL~ 356 (433)
+.|+|++|..-... ....+++++... +.++.+.+|..... .+.++.. ...+|+.+..++++. ++|.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~--------~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPN--------LDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcC--------HHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 46899998554322 345567777664 45777888765321 1122211 124689999999985 7999
Q ss_pred CCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHH
Q 013951 357 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKL 397 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 397 (433)
.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999 999999 9999999999999999999999999875
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=131.66 Aligned_cols=339 Identities=14% Similarity=0.098 Sum_probs=193.3
Q ss_pred CCcEEEEEcCC--CCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCC
Q 013951 6 SQVHFLLLPYL--APGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 6 ~~~~il~~~~~--~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (433)
+++||+|++.- +.||+..+..||+.|++. |.+|++++.......+.. ..+++++.+|--... ..+
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DNG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CCC
Confidence 35699999986 559999999999999998 999999998765543322 137899888731111 111
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhcc
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVS 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 161 (433)
.....+.. .+. .+....-...+...++. .+||++|+|.+-.+ ...+. .|..- + +.
T Consensus 77 ~~~~~d~~-~~l---~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~G--lr~EL--~ptL~------y-------l~-- 131 (400)
T COG4671 77 EYGLVDLD-GDL---EETKKLRSQLILSTAET--FKPDIFIVDKFPFG--LRFEL--LPTLE------Y-------LK-- 131 (400)
T ss_pred ceeeeecC-CCH---HHHHHHHHHHHHHHHHh--cCCCEEEEeccccc--hhhhh--hHHHH------H-------Hh--
Confidence 11111110 011 11112223445566777 99999999976553 11111 11100 0 00
Q ss_pred ccCCCCCCCCCcccCCCCCCCccccccccCc---cCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHH-HHHhhcC
Q 013951 162 KVHENVTSDSEYFNIPGLPDHIEFTKVQLLI---SKRDDDRKELREQILAADKKTYGAIINTFEELESPFIE-NYKKAKQ 237 (433)
Q Consensus 162 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~-~~~~~~~ 237 (433)
.. + ++-.+..+++.+ ......-.....+..+.. -+.+.+..-+.+..+.-. .+.....
T Consensus 132 ---------~~-----~--t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~--yD~V~v~GdP~f~d~~~~~~~~~~i~ 193 (400)
T COG4671 132 ---------TT-----G--TRLVLGLRSIRDIPQELEADWRRAETVRLINRF--YDLVLVYGDPDFYDPLTEFPFAPAIR 193 (400)
T ss_pred ---------hc-----C--CcceeehHhhhhchhhhccchhhhHHHHHHHHh--heEEEEecCccccChhhcCCccHhhh
Confidence 00 0 000011122222 111111111111111111 122334333322111000 0112233
Q ss_pred CcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHh-CCCC--EEE
Q 013951 238 GKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEA-SNKP--FVW 314 (433)
Q Consensus 238 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~i~ 314 (433)
.++.|+|-+....+... .+ +... +++..|+||-|.... ..+.+...++|-.- .+.+ .+.
T Consensus 194 ~k~~ytG~vq~~~~~~~-----------~p-----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~i 255 (400)
T COG4671 194 AKMRYTGFVQRSLPHLP-----------LP-----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLI 255 (400)
T ss_pred hheeEeEEeeccCcCCC-----------CC-----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEE
Confidence 67999997722111110 01 1111 334478899886533 34455555555443 3444 555
Q ss_pred EEeCCcchhhhhhhhchhhHHHHh-----CCCCeEEeCcccH-hhhhcCCCceeeecccchhhHHHHHHcCCcEEecccc
Q 013951 315 VIRGVSKLEALEKWLVQENFEERI-----KGRGLLIRGWAPQ-VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLF 388 (433)
Q Consensus 315 ~~~~~~~~~~~~~~~~p~~~~~~~-----~~~nv~~~~~~pq-~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~ 388 (433)
.+|+. +|+..++.+ ..+++.+..|-.+ ..+|.-++. +|+-||+||++|-|.+|+|.+++|..
T Consensus 256 vtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~ 323 (400)
T COG4671 256 VTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRA 323 (400)
T ss_pred EeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccC
Confidence 56665 554333221 3489999998766 558877777 99999999999999999999999985
Q ss_pred ---cccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 389 ---ADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 389 ---~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
.+|---|.|+ +++|+.-++-.++++++.++++|...++-+
T Consensus 324 ~p~eEQliRA~Rl-~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 324 APREEQLIRAQRL-EELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred CCcHHHHHHHHHH-HhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 4899999999 699999999999999999999999888743
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=3.3e-15 Score=142.27 Aligned_cols=319 Identities=13% Similarity=0.039 Sum_probs=179.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
.||+|...++.||+.|. +|+++|.++|++|+|++.... .+++..-. ..+.+..++. .+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v--------~G~----- 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV--------MGL----- 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh--------ccH-----
Confidence 48999999999999999 999999999999999986632 22221100 0122222110 000
Q ss_pred CCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEE-CCCCcc--hHHHHHHcCCCcEEEecchHHHHHHHhhhhcccc
Q 013951 88 LPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIIS-DMCFPW--TVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKV 163 (433)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~-D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 163 (433)
.. +..+.. .........+++++ .+||+||. |.-+.. ....|+.+|||++.+.+...+.
T Consensus 65 ---~~~l~~~~~-~~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa------------ 126 (385)
T TIGR00215 65 ---REVLGRLGR-LLKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA------------ 126 (385)
T ss_pred ---HHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh------------
Confidence 01 222212 22334477788888 89999996 532223 3338889999998753111110
Q ss_pred CCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEe
Q 013951 164 HENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCI 243 (433)
Q Consensus 164 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 243 (433)
|+.. ..+.+....+ . ++.+++. +...+ . ..+.+..+|
T Consensus 127 -----------------------w~~~--------~~r~l~~~~d------~-v~~~~~~-e~~~~---~-~~g~~~~~v 163 (385)
T TIGR00215 127 -----------------------WRKW--------RAKKIEKATD------F-LLAILPF-EKAFY---Q-KKNVPCRFV 163 (385)
T ss_pred -----------------------cCcc--------hHHHHHHHHh------H-hhccCCC-cHHHH---H-hcCCCEEEE
Confidence 0000 0111111111 1 1122221 22222 1 223467789
Q ss_pred C-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEEe
Q 013951 244 G-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVIR 317 (433)
Q Consensus 244 G-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 317 (433)
| |+....... .....+..+-+.-.+++++|.+-.||...--......++++++.. +.++++...
T Consensus 164 GnPv~~~~~~~----------~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 164 GHPLLDAIPLY----------KPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred CCchhhhcccc----------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 9 542221100 001122222223233456888888887542122344455544432 334555444
Q ss_pred CCcchhhhhhhhchhhHHHHh-CCCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEec----cccc---
Q 013951 318 GVSKLEALEKWLVQENFEERI-KGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW----PLFA--- 389 (433)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~----P~~~--- 389 (433)
........ +.+.... ....+....+ ....+++.+++ +|+-.|..|+ |++.+|+|+|++ |+..
T Consensus 234 ~~~~~~~~------~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~ 303 (385)
T TIGR00215 234 NFKRRLQF------EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIA 303 (385)
T ss_pred CchhHHHH------HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHH
Confidence 33211111 1111111 1223333322 33568888888 9999999888 999999999999 8642
Q ss_pred ------ccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 390 ------DQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 390 ------DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
+|..|++.++ ..|+...+..++.+++.+.+++.++|+|+
T Consensus 304 ~~~~~~~~~~~~nil~-~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 304 RRLVKTDYISLPNILA-NRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred HHHHcCCeeeccHHhc-CCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 3889999995 99999988888899999999999999987
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=2.6e-14 Score=136.94 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=96.8
Q ss_pred CCeEEEEeeCCCcCCChhhHHHHHHHHHhC-CCCEEEEEeCCcchhhhhhhhchhhHHHH--hCCCCeEEeCcccH-hhh
Q 013951 279 PSSVVYVCLGSICNLPSSQLIELGLGLEAS-NKPFVWVIRGVSKLEALEKWLVQENFEER--IKGRGLLIRGWAPQ-VLI 354 (433)
Q Consensus 279 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~--~~~~nv~~~~~~pq-~~l 354 (433)
++++|++..|+.... ..+..+++++... +.++++..+.+... -+.+++. ...+|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~--------~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEAL--------KQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHH--------HHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 345777777876432 2456677777654 45666666543210 0111111 12358999999987 479
Q ss_pred hcCCCceeeecccchhhHHHHHHcCCcEEec-ccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 355 L~~~~~~~~ItHGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+... +.+.+.++|.++++|++
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~----~~~~l~~~i~~ll~~~~ 340 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR----DDEEVFAKTEALLQDDM 340 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC----CHHHHHHHHHHHHCCHH
Confidence 999998 99999988999999999999985 6667788899999 6999987642 56789999999998864
No 39
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.57 E-value=1.4e-16 Score=133.96 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=99.4
Q ss_pred EEEEeeCCCcCCC-hhhHHHHHHHHHh--CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCccc-HhhhhcC
Q 013951 282 VVYVCLGSICNLP-SSQLIELGLGLEA--SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAP-QVLILSH 357 (433)
Q Consensus 282 ~v~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p-q~~lL~~ 357 (433)
+|+|+.||..... .+.+..+...+.. .+.++++.+|....... ...+. ....|+.+.+|.+ ..+++..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~------~~~~~--~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEEL------KIKVE--NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHH------CCCHC--CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHH------HHHHh--ccCCcEEEEechhhHHHHHHH
Confidence 4899999875421 1111122223322 35789999987732211 10110 0126899999999 7889999
Q ss_pred CCceeeecccchhhHHHHHHcCCcEEeccccc----ccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 358 PAVGGFLTHCGWNSSLEGISAGVQMLTWPLFA----DQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 358 ~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+++ +|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+.....+.+.|.++|.++++++.
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 999 999999999999999999999999988 999999999 5999999999989899999999999998864
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.51 E-value=2.6e-13 Score=130.07 Aligned_cols=135 Identities=13% Similarity=0.204 Sum_probs=96.6
Q ss_pred CCeEEEEeeCCCcCCChhhHHHHHHHHHh--CCCCEEEEEeCCcchhhhhhhhchhhHHHHh-CCCCeEEeCcccH-hhh
Q 013951 279 PSSVVYVCLGSICNLPSSQLIELGLGLEA--SNKPFVWVIRGVSKLEALEKWLVQENFEERI-KGRGLLIRGWAPQ-VLI 354 (433)
Q Consensus 279 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq-~~l 354 (433)
++++|+++.|+... ...+..+++++.+ .+.++++..|.+.. +-+.+.... ..+|+.+.+|.++ .++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 35588888888752 2345555555433 24566666654421 101121111 2468888899866 458
Q ss_pred hcCCCceeeecccchhhHHHHHHcCCcEEec-ccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTW-PLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 355 L~~~~~~~~ItHGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
++.+++ +|+..|..|+.||+++|+|+|++ |..++|..|+..+ ++.|+|+..+ +.+.+.++|.++++|++
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~----~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD----TPEEAIKIVASLTNGNE 340 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC----CHHHHHHHHHHHhcCHH
Confidence 999999 99988888999999999999998 6667778999999 6999998754 67788899999998864
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.49 E-value=6e-13 Score=127.57 Aligned_cols=317 Identities=14% Similarity=0.056 Sum_probs=162.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+||+|+..++.||+.|.. ++++|+++++++.++..... .+++.. .. ..+.+..++ .
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~----~~-~~~~~~~l~---------~------- 57 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG----CE-SLFDMEELA---------V------- 57 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC----Cc-cccCHHHhh---------h-------
Confidence 589999999999999999 99999999898888875431 122110 00 011111111 0
Q ss_pred CCCcc-HHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCC-Ccch--HHHHHHcCCCcEEEecchHHHHHHHhhhhcccc
Q 013951 88 LPTTD-FARFMKSLHMLQQPFENLFKEKTLKPCCIISDMC-FPWT--VDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKV 163 (433)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 163 (433)
..... +..+ .........+.+++++ .+||+|+.-.+ +.+. ...|.+.|||++.+.....+.
T Consensus 58 ~g~~~~~~~~-~~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~------------ 122 (380)
T PRK00025 58 MGLVEVLPRL-PRLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA------------ 122 (380)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh------------
Confidence 00011 1111 1122345567888888 99999886333 2233 344778899987642110000
Q ss_pred CCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEe
Q 013951 164 HENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCI 243 (433)
Q Consensus 164 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 243 (433)
.. ....+.+ .+..+.++..+-. +... +. ..+-++.++
T Consensus 123 --------------~~--------------------~~~~~~~---~~~~d~i~~~~~~--~~~~---~~-~~g~~~~~~ 159 (380)
T PRK00025 123 --------------WR--------------------QGRAFKI---AKATDHVLALFPF--EAAF---YD-KLGVPVTFV 159 (380)
T ss_pred --------------cC--------------------chHHHHH---HHHHhhheeCCcc--CHHH---HH-hcCCCeEEE
Confidence 00 0001111 1112223332211 1111 11 122347888
Q ss_pred C-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEEe
Q 013951 244 G-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVIR 317 (433)
Q Consensus 244 G-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 317 (433)
| |+....... ....++.+-+.-.+++++|.+..||...........++++++.. +.+++|..+
T Consensus 160 G~p~~~~~~~~-----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~ 228 (380)
T PRK00025 160 GHPLADAIPLL-----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLV 228 (380)
T ss_pred CcCHHHhcccc-----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 8 432211000 01122222232222344666766765432112234445554432 345666654
Q ss_pred CCcchhhhhhhhchhhHHHHhC---CCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccccc-----
Q 013951 318 GVSKLEALEKWLVQENFEERIK---GRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFA----- 389 (433)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~~---~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~----- 389 (433)
+....+ .+++... .-++.+.. -.-..+++.+++ +|+-+|.+++ |++.+|+|+|.+|...
T Consensus 229 ~~~~~~---------~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~ 295 (380)
T PRK00025 229 NPKRRE---------QIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFW 295 (380)
T ss_pred ChhhHH---------HHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHH
Confidence 232111 1111111 12333322 123568888998 9999999887 9999999999985321
Q ss_pred ---ccchh-----HHHhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 390 ---DQFCN-----EKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 390 ---DQ~~n-----a~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
.|..| +..+ +..|++..+.....+.+.+.++|.++++|++.
T Consensus 296 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 344 (380)
T PRK00025 296 IAKRLVKVPYVSLPNLL-AGRELVPELLQEEATPEKLARALLPLLADGAR 344 (380)
T ss_pred HHHHHHcCCeeehHHHh-cCCCcchhhcCCCCCHHHHHHHHHHHhcCHHH
Confidence 23222 3444 25555555555667889999999999998753
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=1.6e-13 Score=111.67 Aligned_cols=126 Identities=19% Similarity=0.247 Sum_probs=79.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCC-CCCC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCEN-CDLL 88 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~ 88 (433)
|+|.+.|+.||++|+++||++|++|||+|++++++...+.+++ . |+.|..++.+ ..... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~----~-----Gl~~~~~~~~-------~~~~~~~~~~ 64 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA----A-----GLEFVPIPGD-------SRLPRSLEPL 64 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH----T-----T-EEEESSSC-------GGGGHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc----c-----CceEEEecCC-------cCcCcccchh
Confidence 7899999999999999999999999999999999966554433 2 8999987642 00000 0000
Q ss_pred CCc-cHHHHHHHHHHhHHHHHHHHHhC------CCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHH
Q 013951 89 PTT-DFARFMKSLHMLQQPFENLFKEK------TLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFC 151 (433)
Q Consensus 89 ~~~-~~~~~~~~~~~~~~~l~~~l~~~------~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 151 (433)
... ...............+.+...+. ....|+++++.....+..+|+++|||++.....+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 65 ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 000 01111111222223333322221 1478888889877889999999999999987766543
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.36 E-value=1e-11 Score=118.85 Aligned_cols=133 Identities=16% Similarity=0.110 Sum_probs=92.3
Q ss_pred CCCeEEEEeeCCCcCCChhhHHHHHHHHHh---------CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCc
Q 013951 278 QPSSVVYVCLGSICNLPSSQLIELGLGLEA---------SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGW 348 (433)
Q Consensus 278 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~ 348 (433)
+++++|++..|+..... +..+++++.. .+.++++..|.+.. +-+.++......++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEec
Confidence 34557777666654322 3333444432 23456677665421 1111211112357888899
Q ss_pred ccH-hhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccc-hhHHHhhhhccceEEeeeeccCCcccccchhhcc
Q 013951 349 APQ-VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQF-CNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKIS 426 (433)
Q Consensus 349 ~pq-~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il 426 (433)
+++ .++++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+ -+.+.+.++|.+++
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~----~~~~~la~~i~~ll 345 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS----ESPKEIARIVAEWF 345 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec----CCHHHHHHHHHHHH
Confidence 886 558889998 999999999999999999999998777776 689889 489999865 37789999999998
Q ss_pred cc
Q 013951 427 CN 428 (433)
Q Consensus 427 ~~ 428 (433)
+|
T Consensus 346 ~~ 347 (382)
T PLN02605 346 GD 347 (382)
T ss_pred cC
Confidence 87
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.8e-10 Score=99.30 Aligned_cols=285 Identities=17% Similarity=0.150 Sum_probs=172.3
Q ss_pred cEEEEEcCC----CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCC
Q 013951 8 VHFLLLPYL----APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 8 ~~il~~~~~----~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
+||+|.+-+ ++||+..++.||++|.++|..++|++.+...+.+.+ ..+ ++.+. ..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~-~~~------~f~~~------------~~-- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHK-VYE------GFKVL------------EG-- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhh-hhh------hccce------------ee--
Confidence 478888876 679999999999999999999999998854443222 100 01111 00
Q ss_pred CCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcCCCcEEEecchHHHHHHHhhhhc
Q 013951 84 NCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGV 160 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 160 (433)
.....+++ .++|++|.|.+.. ....+.++.+.+.+.+-.-....+..
T Consensus 60 ----------------------~~~n~ik~--~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d------ 109 (318)
T COG3980 60 ----------------------RGNNLIKE--EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKD------ 109 (318)
T ss_pred ----------------------eccccccc--ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhh------
Confidence 00115667 8999999999887 34566778899998863332222110
Q ss_pred cccCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcE
Q 013951 161 SKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKV 240 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 240 (433)
.........+ -+.+..+.+. ...
T Consensus 110 --------------------------------------~d~ivN~~~~---------a~~~y~~v~~----------k~~ 132 (318)
T COG3980 110 --------------------------------------NDLIVNAILN---------ANDYYGLVPN----------KTR 132 (318)
T ss_pred --------------------------------------hHhhhhhhhc---------chhhccccCc----------ceE
Confidence 0000000000 0111111111 223
Q ss_pred EEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChh-hHHHHHHHHHhCCCCEEEEEeCC
Q 013951 241 WCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSS-QLIELGLGLEASNKPFVWVIRGV 319 (433)
Q Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~ 319 (433)
++.||-..+-....- .+.+-.-.+ +..-|+|++|.. ++. ..-+++..+.+.++.+-+++|..
T Consensus 133 ~~lGp~y~~lr~eF~-------------~~r~~~~~r-~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~ 195 (318)
T COG3980 133 YYLGPGYAPLRPEFY-------------ALREENTER-PKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSS 195 (318)
T ss_pred EEecCCceeccHHHH-------------HhHHHHhhc-chheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCC
Confidence 666765443211000 001111111 233589999865 333 44567788888787776777643
Q ss_pred cchhhhhhhhchhhHHHHh-CCCCeEEeCccc-HhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHH
Q 013951 320 SKLEALEKWLVQENFEERI-KGRGLLIRGWAP-QVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKL 397 (433)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~p-q~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 397 (433)
... + .+.+.+. ..+|+....... -..++..+++ .|+-||. |++|++.-|+|.+++|+...|.--|..
T Consensus 196 ~p~-------l-~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~ 264 (318)
T COG3980 196 NPT-------L-KNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKE 264 (318)
T ss_pred Ccc-------h-hHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHH
Confidence 221 1 1222222 356776655554 3458989999 9999986 999999999999999999999999999
Q ss_pred hhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 398 IVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 398 v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
. +.+|+-.-++.. +..+....-+..+.+|+.
T Consensus 265 f-~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 265 F-EALGIIKQLGYH-LKDLAKDYEILQIQKDYA 295 (318)
T ss_pred H-HhcCchhhccCC-CchHHHHHHHHHhhhCHH
Confidence 9 699998877755 455555555555555543
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.27 E-value=5.8e-09 Score=102.66 Aligned_cols=129 Identities=14% Similarity=0.046 Sum_probs=84.5
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---hhcCC
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL---ILSHP 358 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~~ 358 (433)
.+++..|++.. ...+..++++++..+.-.++.+|.+... +.+++.....|+.+.+++++.+ +++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~~---------~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPYR---------EELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChHH---------HHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 44566687643 3446667788777643334455544321 2233333456899999998655 77788
Q ss_pred Cceeeeccc---c-hhhHHHHHHcCCcEEecccccccchhHHHhhhh---ccceEEeeeeccCCcccccchhhcccccc
Q 013951 359 AVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNV---LRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 359 ~~~~~ItHG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~---~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
++ +|.-. | -.++.||+++|+|+|+.... .....+ +. -+.|..++.. +.+.+.++|.++++|++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG--DVDDCVEKLETLLADPE 402 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHH
Confidence 88 77432 2 34788999999999987542 344455 45 6788887653 56889999999998864
No 46
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.22 E-value=1.2e-09 Score=104.39 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=91.0
Q ss_pred CeEEEEeeCCCcCCChhhHHHHHHHHHhC----CCCEEEEEeCCcchhhhhhhhchh-hHHH---------HhCCCCeEE
Q 013951 280 SSVVYVCLGSICNLPSSQLIELGLGLEAS----NKPFVWVIRGVSKLEALEKWLVQE-NFEE---------RIKGRGLLI 345 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~p~-~~~~---------~~~~~nv~~ 345 (433)
+++|.+-.||...--...+..++++++.. +..+++.+.+....+..... +.+ ++.. .+..+++.+
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAI-LEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHH-HHhcCceecCCccccchhhccCceEE
Confidence 35788888888543333344556555543 56788887444322111110 000 1100 011123555
Q ss_pred eCcc-cHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhc----cceEEeeeeccCCccccc
Q 013951 346 RGWA-PQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVL----RIGVSVGVEVDLPITTSN 420 (433)
Q Consensus 346 ~~~~-pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~----G~G~~l~~~~~~~~~l~~ 420 (433)
..+. .-.++++.+++ +|+-.|..| .|+...|+|+|++|.-..|. |+... ++. |.++.+... +.+.+.+
T Consensus 284 ~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~~--~~~~l~~ 356 (396)
T TIGR03492 284 LLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLASK--NPEQAAQ 356 (396)
T ss_pred EechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCCC--CHHHHHH
Confidence 4444 34668999999 999999766 99999999999999877776 88877 464 777766532 3489999
Q ss_pred chhhcccccc
Q 013951 421 YLCKISCNSQ 430 (433)
Q Consensus 421 ai~~il~~~~ 430 (433)
++.++++|++
T Consensus 357 ~l~~ll~d~~ 366 (396)
T TIGR03492 357 VVRQLLADPE 366 (396)
T ss_pred HHHHHHcCHH
Confidence 9999998864
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=1.3e-08 Score=96.48 Aligned_cols=128 Identities=11% Similarity=0.045 Sum_probs=83.8
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCC---CEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---hh
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNK---PFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL---IL 355 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~---~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL 355 (433)
.+++..|+... .+....++++++.... -.++.+|.+.... .++ ...+|+.+.+++++.+ ++
T Consensus 198 ~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~---------~~~--~~~~~v~~~g~~~~~~~~~~~ 264 (364)
T cd03814 198 PVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIVGDGPARA---------RLE--ARYPNVHFLGFLDGEELAAAY 264 (364)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEEeCCchHH---------HHh--ccCCcEEEEeccCHHHHHHHH
Confidence 55667777543 2334445555554321 2334444432211 111 2357899999999765 78
Q ss_pred cCCCceeeecccc----hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 356 SHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 356 ~~~~~~~~ItHGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
..+++ +|..+. .+++.||+++|+|+|+.+.. .+...+ ++.+.|...+.. +.+.+.++|.++++|++.
T Consensus 265 ~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 265 ASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEPG--DAEAFAAALAALLADPEL 335 (364)
T ss_pred HhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCCC--CHHHHHHHHHHHHcCHHH
Confidence 88888 886654 46899999999999987644 466677 588899877643 556799999999988643
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.12 E-value=2.5e-08 Score=94.32 Aligned_cols=130 Identities=13% Similarity=0.044 Sum_probs=82.4
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHhC---CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---h
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEAS---NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL---I 354 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---l 354 (433)
..+++..|++.. .+....++++++.. +.+++ .+|....... ........+|+.+.+++++.+ +
T Consensus 191 ~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~-i~G~~~~~~~--------~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 191 RLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELV-IVGNGLELEE--------ESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred ceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEE-EEcCchhhhH--------HHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 356677787643 22344455555543 34443 3444322110 000012357899999997655 5
Q ss_pred hcCCCceeeec----ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 355 LSHPAVGGFLT----HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 355 L~~~~~~~~It----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
+..+++ +|. ..|. .++.||+++|+|+|+.+ ...+...+ +..+.|..++.. +.+.+.++|.++++|+
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i-~~~~~g~~~~~~--d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELV-RDGVNGLLFPPG--DAEDLAAALERLIDDP 330 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHh-cCCCcEEEECCC--CHHHHHHHHHHHHhCh
Confidence 778888 663 2333 47899999999999865 44566677 576678877653 4789999999999876
Q ss_pred c
Q 013951 430 Q 430 (433)
Q Consensus 430 ~ 430 (433)
+
T Consensus 331 ~ 331 (359)
T cd03823 331 D 331 (359)
T ss_pred H
Confidence 4
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=8e-08 Score=91.25 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=63.2
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..+|+.+.+++|+.+ ++..+++ +|.- |+..++.||+++|+|+|+.. ....+..+ +..+.|..++..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~ 329 (374)
T cd03817 257 LADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPG 329 (374)
T ss_pred CCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCC
Confidence 357899999999765 6778888 6633 33468999999999999864 45566777 577888888754
Q ss_pred ccCCcccccchhhcccccc
Q 013951 412 VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~~ 430 (433)
+. .+.++|.+++++++
T Consensus 330 ~~---~~~~~i~~l~~~~~ 345 (374)
T cd03817 330 DE---ALAEALLRLLQDPE 345 (374)
T ss_pred CH---HHHHHHHHHHhChH
Confidence 42 89999999998875
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.05 E-value=1.4e-07 Score=91.42 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCeEEe-CcccHhh---hhcCCCceeeec-c----c-c-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEee
Q 013951 341 RGLLIR-GWAPQVL---ILSHPAVGGFLT-H----C-G-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVG 409 (433)
Q Consensus 341 ~nv~~~-~~~pq~~---lL~~~~~~~~It-H----G-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~ 409 (433)
+|+... +|+|..+ +|+.+++ +|. + | | -+++.||+++|+|+|+.. .......+ ++.+.|+.++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHh-cCCCCEEEEC
Confidence 456544 6887655 5778888 662 1 1 2 347999999999999854 34566677 6888898873
Q ss_pred eeccCCcccccchhhcccc
Q 013951 410 VEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 410 ~~~~~~~~l~~ai~~il~~ 428 (433)
+.+.+.++|.++++|
T Consensus 367 ----d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 ----DSEELAEQLIDLLSN 381 (415)
T ss_pred ----CHHHHHHHHHHHHhc
Confidence 789999999999998
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.04 E-value=7.6e-08 Score=91.89 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=80.6
Q ss_pred CeEEEEeeCCCcCCChhhHHHHHHHHHh---C-CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh--
Q 013951 280 SSVVYVCLGSICNLPSSQLIELGLGLEA---S-NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL-- 353 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~-- 353 (433)
++.+++..|+... ......+++++.. . +.++ +.+|.+....... ........+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l-~i~G~~~~~~~~~------~~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 219 DKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRF-LIVGDGPEKEELK------ELAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred CcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEE-EEeCCcccHHHHH------HHHHHcCCCcEEEeCCCChHHHH
Confidence 3466777787654 2233444444443 3 3343 3344433211110 111123457899999998765
Q ss_pred -hhcCCCceeeecccc---------hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchh
Q 013951 354 -ILSHPAVGGFLTHCG---------WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLC 423 (433)
Q Consensus 354 -lL~~~~~~~~ItHGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~ 423 (433)
++..+++ +|.... -+++.||+++|+|+|+.+..+. ...+ +..+.|..++.. +.+.+.++|.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~-~~~~~g~~~~~~--~~~~l~~~i~ 360 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELV-EEAGAGLVVPPG--DPEALAAAIL 360 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhh-ccCCcceEeCCC--CHHHHHHHHH
Confidence 6777887 664322 2347999999999999876543 3344 355777777653 6788999999
Q ss_pred hcccccc
Q 013951 424 KISCNSQ 430 (433)
Q Consensus 424 ~il~~~~ 430 (433)
++++|++
T Consensus 361 ~~~~~~~ 367 (394)
T cd03794 361 ELLDDPE 367 (394)
T ss_pred HHHhChH
Confidence 9997764
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.02 E-value=1.1e-07 Score=91.65 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=63.0
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
.+|+.+.+++|+.+ ++..+++ +|+. |--.++.||+++|+|+|+... ......+ ++.+.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i-~~~~~g~~~~~~- 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIV-VDGVTGLLVDPR- 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHc-cCCCCeEEeCCC-
Confidence 47899999999866 4778888 7743 223589999999999997653 3455667 587889887653
Q ss_pred cCCcccccchhhcccccc
Q 013951 413 DLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~~ 430 (433)
+.+.+.++|.+++++++
T Consensus 354 -~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 354 -DPEALAAALRRLLTDPA 370 (398)
T ss_pred -CHHHHHHHHHHHHhCHH
Confidence 57899999999998763
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.02 E-value=2.8e-07 Score=87.03 Aligned_cols=314 Identities=14% Similarity=0.044 Sum_probs=165.7
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHH
Q 013951 18 PGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFM 97 (433)
Q Consensus 18 ~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
.|+...+..+++.|.+.||+|++++......... ..... .... .. .........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~-------------~~~~~--------~~~~-~~----~~~~~~~~~ 67 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDE-------------EEVGG--------IVVV-RP----PPLLRVRRL 67 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCce-------------eeecC--------ccee-cC----Ccccccchh
Confidence 6889999999999999999999999874432110 00000 0000 00 000000111
Q ss_pred HHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchH--HHHHHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCCccc
Q 013951 98 KSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTV--DTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDSEYFN 175 (433)
Q Consensus 98 ~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (433)
.........+...+++ .++|+|++........ ..+...++|++........... ..
T Consensus 68 ~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------~~- 125 (374)
T cd03801 68 LLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP-------------------GN- 125 (374)
T ss_pred HHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc-------------------cc-
Confidence 1112233456677777 8999999988665433 4788889999875433222100 00
Q ss_pred CCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcC---CcEEEeCcCCCCCCC
Q 013951 176 IPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQ---GKVWCIGPASLCNKE 252 (433)
Q Consensus 176 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~~vGpl~~~~~~ 252 (433)
. ...................+.++..+....+ .+....+ .++..+.+-......
T Consensus 126 ----------~--------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (374)
T cd03801 126 ----------E--------LGLLLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGVDTERF 182 (374)
T ss_pred ----------c--------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCccccccc
Confidence 0 0000111111112233455666666644332 2223332 256666532221110
Q ss_pred CccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCC---CCE-EEEEeCCcchhhhhhh
Q 013951 253 PIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASN---KPF-VWVIRGVSKLEALEKW 328 (433)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~---~~~-i~~~~~~~~~~~~~~~ 328 (433)
.. .......-.... ++..+++.+|+.. ....+..+++++.... ..+ ++.+|.......
T Consensus 183 ~~-----------~~~~~~~~~~~~-~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~---- 244 (374)
T cd03801 183 RP-----------APRAARRRLGIP-EDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREE---- 244 (374)
T ss_pred Cc-----------cchHHHhhcCCc-CCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHH----
Confidence 00 000001111111 2235667777765 2334455555555432 223 333443321111
Q ss_pred hchhhHHHHhCCCCeEEeCcccHhh---hhcCCCceeeec----ccchhhHHHHHHcCCcEEecccccccchhHHHhhhh
Q 013951 329 LVQENFEERIKGRGLLIRGWAPQVL---ILSHPAVGGFLT----HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNV 401 (433)
Q Consensus 329 ~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~~~It----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~ 401 (433)
+-.........+|+.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+... ......+ ++
T Consensus 245 -~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~ 316 (374)
T cd03801 245 -LEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-ED 316 (374)
T ss_pred -HHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cC
Confidence 111111122467899999997544 6778888 663 3556789999999999998664 5567777 57
Q ss_pred ccceEEeeeeccCCcccccchhhcccccc
Q 013951 402 LRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 402 ~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.+.|...+.. +.+.+.++|.++++|++
T Consensus 317 ~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 317 GETGLLVPPG--DPEALAEAILRLLDDPE 343 (374)
T ss_pred CcceEEeCCC--CHHHHHHHHHHHHcChH
Confidence 7888877653 47899999999988864
No 54
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.00 E-value=3.7e-07 Score=88.08 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=61.9
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeeec-ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccC
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFLT-HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDL 414 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~It-HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 414 (433)
.++|.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|.. |.......+ +.-..|..++. -+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~~--~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVDF--FD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcCC--CC
Confidence 47899999999865 567788832223 2333 3789999999999986 445566677 46667877765 35
Q ss_pred Ccccccchhhcccccc
Q 013951 415 PITTSNYLCKISCNSQ 430 (433)
Q Consensus 415 ~~~l~~ai~~il~~~~ 430 (433)
.+.+.++|.++++|++
T Consensus 353 ~~~la~~i~~ll~~~~ 368 (396)
T cd03818 353 PDALAAAVIELLDDPA 368 (396)
T ss_pred HHHHHHHHHHHHhCHH
Confidence 7899999999998874
No 55
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.95 E-value=6.2e-07 Score=85.41 Aligned_cols=135 Identities=19% Similarity=0.117 Sum_probs=87.3
Q ss_pred CeEEEEeeCCCcCC-ChhhHHHHHHHHHhCCC-CEEEEEeCCcch-hhhhhhhchhhHHHHhC--CCCeEEeCcccHh--
Q 013951 280 SSVVYVCLGSICNL-PSSQLIELGLGLEASNK-PFVWVIRGVSKL-EALEKWLVQENFEERIK--GRGLLIRGWAPQV-- 352 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~-~~~~~~~~p~~~~~~~~--~~nv~~~~~~pq~-- 352 (433)
++.|++++|..... ..+.+..++++++.... ++.+...++... .. +-+.. .+.. .+|+.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~-----l~~~~-~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPR-----IREAG-LEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHH-----HHHHH-HhhccCCCCEEEECCcCHHHH
Confidence 45788888876543 35567778888876543 355544433221 11 11111 1111 4688887766554
Q ss_pred -hhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 353 -LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 353 -~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
.++..+++ +|+..| |.+.||++.|+|+|+++.. |. +..++ +.|+++.+.. +.+.+.++|.++++++..
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~~---~~~~i~~~i~~ll~~~~~ 340 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVGT---DPEAILAAIEKLLSDEFA 340 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecCC---CHHHHHHHHHHHhcCchh
Confidence 45767888 999999 7778999999999998733 32 33553 6787766642 467899999999988643
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.94 E-value=3.9e-07 Score=85.88 Aligned_cols=314 Identities=13% Similarity=0.104 Sum_probs=161.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
||++++....|+...+..++++|.++||+|++++....... .. ...++.+..++.. . . ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~-----~~~~~~~~~~~~~-------~--~---~~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---EL-----EALGVKVIPIPLD-------R--R---GI 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---cc-----ccCCceEEecccc-------c--c---cc
Confidence 57788777888999999999999999999999998754432 01 1124555554321 0 0 00
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCCC
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHEN 166 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (433)
.. +..+. ....+.+.+++ .+||+|++..... .+...++..+.|.+.+.........
T Consensus 61 ~~--~~~~~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 118 (359)
T cd03808 61 NP--FKDLK-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------- 118 (359)
T ss_pred Ch--HhHHH-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-------------
Confidence 00 11111 12245667777 8999999886543 2344444366665554322211100
Q ss_pred CCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHH-HhcccccEEEEcChhhcchHHHHHHHhhc----CCcEE
Q 013951 167 VTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQIL-AADKKTYGAIINTFEELESPFIENYKKAK----QGKVW 241 (433)
Q Consensus 167 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~----~~~~~ 241 (433)
.. ... ....+.... ......+.++..+....+. +.... ...+.
T Consensus 119 ----~~----~~~-------------------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~~ 166 (359)
T cd03808 119 ----TS----GGL-------------------KRRLYLLLERLALRFTDKVIFQNEDDRDL-----ALKLGIIKKKKTVL 166 (359)
T ss_pred ----cc----chh-------------------HHHHHHHHHHHHHhhccEEEEcCHHHHHH-----HHHhcCCCcCceEE
Confidence 00 000 011111111 1123345566665443321 11211 12233
Q ss_pred EeCcCCCCCCCCccccccCCCCCCCchhhhhhhcc-CCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC---CCCE-EEEE
Q 013951 242 CIGPASLCNKEPIDKAERGKTASIDVPECLTWLDS-QQPSSVVYVCLGSICNLPSSQLIELGLGLEAS---NKPF-VWVI 316 (433)
Q Consensus 242 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~-i~~~ 316 (433)
.++....... ...... ..+++.+++..|+... .+....++++++.. +..+ ++.+
T Consensus 167 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~ 225 (359)
T cd03808 167 IPGSGVDLDR-------------------FSPSPEPIPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLV 225 (359)
T ss_pred ecCCCCChhh-------------------cCccccccCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3322111100 000000 1223467777887653 22344444444432 2222 3334
Q ss_pred eCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhhcCCCceeeeccc----chhhHHHHHHcCCcEEeccccccc
Q 013951 317 RGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFADQ 391 (433)
Q Consensus 317 ~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHG----G~gs~~eal~~GvP~v~~P~~~DQ 391 (433)
|.......... .........+++.+.++..+ ..++..+++ +|.-+ --+++.||+.+|+|+|+...
T Consensus 226 G~~~~~~~~~~----~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~---- 295 (359)
T cd03808 226 GDGDEENPAAI----LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDV---- 295 (359)
T ss_pred cCCCcchhhHH----HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecC----
Confidence 44332111100 00111123567888776443 458888888 66543 25689999999999998643
Q ss_pred chhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 392 FCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 392 ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
..+...+ ++.+.|..++. -+.+.+.++|.++++|++
T Consensus 296 ~~~~~~i-~~~~~g~~~~~--~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 296 PGCREAV-IDGVNGFLVPP--GDAEALADAIERLIEDPE 331 (359)
T ss_pred CCchhhh-hcCcceEEECC--CCHHHHHHHHHHHHhCHH
Confidence 3455667 57778877764 256889999999888764
No 57
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.93 E-value=3.2e-07 Score=87.47 Aligned_cols=320 Identities=12% Similarity=0.072 Sum_probs=164.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
||++++ +++.|+.=+..+.++|.++ +.++.++.+...........+. +++.. .++. .+ + . .
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-----~~i~~-~~~~-----~~--~--~-~- 63 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-----FHLPP-DYDL-----NI--M--S-P- 63 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCC-Ceee-----ec--C--C-C-
Confidence 788877 9999999999999999987 6666666655433222222211 23321 1110 01 0 0 0
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECC--CC-cchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccC
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDM--CF-PWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVH 164 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
.. ........+...+.+++++ .+||+|++-. .. .++..+|..+|||++.+.... ..
T Consensus 64 --~~---~~~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s------------- 122 (365)
T TIGR00236 64 --GQ---TLGEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RT------------- 122 (365)
T ss_pred --CC---CHHHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-Cc-------------
Confidence 00 1122333345678888999 8999999863 32 367889999999987642110 00
Q ss_pred CCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHh-hcC-CcEEE
Q 013951 165 ENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKK-AKQ-GKVWC 242 (433)
Q Consensus 165 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~~-~~~~~ 242 (433)
. .. ...++... .+.....+ ++.++..+-.. .+.+.+ -.+ .++..
T Consensus 123 --~---~~---~~~~~~~~---------------~r~~~~~~------ad~~~~~s~~~-----~~~l~~~G~~~~~I~v 168 (365)
T TIGR00236 123 --G---DR---YSPMPEEI---------------NRQLTGHI------ADLHFAPTEQA-----KDNLLRENVKADSIFV 168 (365)
T ss_pred --C---CC---CCCCccHH---------------HHHHHHHH------HHhccCCCHHH-----HHHHHHcCCCcccEEE
Confidence 0 00 00001000 00111111 12222222111 111111 122 35777
Q ss_pred eCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEEe
Q 013951 243 IGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVIR 317 (433)
Q Consensus 243 vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 317 (433)
+|......... ... .....++.+-+. .++.+++++.+-.... .+.+..+++++... +.++++..+
T Consensus 169 ign~~~d~~~~----~~~---~~~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~ 238 (365)
T TIGR00236 169 TGNTVIDALLT----NVE---IAYSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVH 238 (365)
T ss_pred eCChHHHHHHH----HHh---hccchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 77332110000 000 000111222222 1234666665432222 13466677777653 445555543
Q ss_pred CCcchhhhhhhhchhhHHHHh-CCCCeEEeCcccHh---hhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccch
Q 013951 318 GVSKLEALEKWLVQENFEERI-KGRGLLIRGWAPQV---LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFC 393 (433)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~---~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (433)
++... -..+.... ..+|+.+.+.+++. .++..+++ +|+-.|.. +.||+++|+|+|.++..++++.
T Consensus 239 ~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e 307 (365)
T TIGR00236 239 LNPVV--------REPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE 307 (365)
T ss_pred CChHH--------HHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH
Confidence 32211 01111111 24688888766654 56677777 89877644 7999999999999976665553
Q ss_pred hHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 394 NEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 394 na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+. ..|.++.+. .+.+.+.++|.++++|++
T Consensus 308 ----~~-~~g~~~lv~---~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 308 ----TV-EAGTNKLVG---TDKENITKAAKRLLTDPD 336 (365)
T ss_pred ----HH-hcCceEEeC---CCHHHHHHHHHHHHhChH
Confidence 32 467776653 377899999999998764
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.88 E-value=5.4e-07 Score=85.99 Aligned_cols=132 Identities=13% Similarity=0.067 Sum_probs=79.7
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHh----CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhhc
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEA----SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLILS 356 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL~ 356 (433)
.+++.+|.... ...+..+++++.. .+.++++. |.+..... +-+........+++.+.++.++ ..++.
T Consensus 198 ~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~-G~g~~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 269 (371)
T cd04962 198 KVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLV-GDGPERSP-----AERLARELGLQDDVLFLGKQDHVEELLS 269 (371)
T ss_pred eEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEE-cCCcCHHH-----HHHHHHHcCCCceEEEecCcccHHHHHH
Confidence 55667776653 3334445555432 34454444 33322111 1111111112467888888765 45788
Q ss_pred CCCceeeec----ccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 357 HPAVGGFLT----HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 357 ~~~~~~~It----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.+++ +|. -|.-.++.||+++|+|+|+.. ....+..+ ++-..|..++. -+.+.+.++|.++++|+.
T Consensus 270 ~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i-~~~~~G~~~~~--~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 270 IADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVV-KHGETGFLVDV--GDVEAMAEYALSLLEDDE 338 (371)
T ss_pred hcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhh-cCCCceEEcCC--CCHHHHHHHHHHHHhCHH
Confidence 8888 662 233459999999999999854 44566677 46667877664 356788999999888754
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.87 E-value=2.4e-06 Score=80.88 Aligned_cols=317 Identities=16% Similarity=0.106 Sum_probs=162.6
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHH
Q 013951 17 APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARF 96 (433)
Q Consensus 17 ~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (433)
..|+..-+..+++.|.+.||+|++++............. ....... ........ .... ..
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~---~~~~---~~ 72 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGVE-------RLPVLLPV---VPLL---KG 72 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------ccccccc-------ccccCcch---hhcc---cc
Confidence 478888899999999999999999998754332111100 0000000 00000000 0000 01
Q ss_pred HHHHHHhHHHHHHHHH--hCCCCCcEEEECCCCc---chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCC
Q 013951 97 MKSLHMLQQPFENLFK--EKTLKPCCIISDMCFP---WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDS 171 (433)
Q Consensus 97 ~~~~~~~~~~l~~~l~--~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (433)
..........+.+.++ . .++|+|++..... ....+++..++|++..........
T Consensus 73 ~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------- 131 (377)
T cd03798 73 PLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------- 131 (377)
T ss_pred chhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc-------------------
Confidence 1111223445666676 6 8999999886543 345666777889887543322110
Q ss_pred CcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhh--cCCcEEEeCcCCCC
Q 013951 172 EYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKA--KQGKVWCIGPASLC 249 (433)
Q Consensus 172 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~~~~~~~vGpl~~~ 249 (433)
... . . ...... .......+.++..+...-+ .+.+. ...++..++.....
T Consensus 132 -------~~~----~--~--------~~~~~~---~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~ 182 (377)
T cd03798 132 -------LPR----K--R--------LLRALL---RRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDT 182 (377)
T ss_pred -------cCc----h--h--------hHHHHH---HHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCc
Confidence 000 0 0 011111 2223455566665543322 12222 23456666543222
Q ss_pred CCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC---CCCEEEEEeCCcchhhhh
Q 013951 250 NKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS---NKPFVWVIRGVSKLEALE 326 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~ 326 (433)
..-.. . ..... .-.... .+..+++..|+... .+....++++++.. ...+.+.+.+.......
T Consensus 183 ~~~~~---------~-~~~~~-~~~~~~-~~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~- 247 (377)
T cd03798 183 ERFSP---------A-DRAEA-RKLGLP-EDKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPLREA- 247 (377)
T ss_pred ccCCC---------c-chHHH-HhccCC-CCceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHH-
Confidence 11000 0 00000 011111 13356677787654 23344455555443 23444444333211100
Q ss_pred hhhchhhHHHHhCCCCeEEeCcccHh---hhhcCCCceeee----cccchhhHHHHHHcCCcEEecccccccchhHHHhh
Q 013951 327 KWLVQENFEERIKGRGLLIRGWAPQV---LILSHPAVGGFL----THCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIV 399 (433)
Q Consensus 327 ~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~I----tHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 399 (433)
+.+..+.....+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+. ......+
T Consensus 248 ---~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~- 317 (377)
T cd03798 248 ---LEALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII- 317 (377)
T ss_pred ---HHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-
Confidence 11111111235789999999875 46777787 65 23556789999999999998653 3455667
Q ss_pred hhccceEEeeeeccCCcccccchhhcccccc
Q 013951 400 NVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 400 e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+..+.|...+. -+.+.+.++|.++++++.
T Consensus 318 ~~~~~g~~~~~--~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 318 TDGENGLLVPP--GDPEALAEAILRLLADPW 346 (377)
T ss_pred cCCcceeEECC--CCHHHHHHHHHHHhcCcH
Confidence 57777777664 367788999999998865
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.85 E-value=1.3e-06 Score=81.94 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=58.0
Q ss_pred CCCeEEeCccc-HhhhhcCCCceeeeccc----chhhHHHHHHcCCcEEecccccccchhHHHhhhhcc-ceEEeeeecc
Q 013951 340 GRGLLIRGWAP-QVLILSHPAVGGFLTHC----GWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLR-IGVSVGVEVD 413 (433)
Q Consensus 340 ~~nv~~~~~~p-q~~lL~~~~~~~~ItHG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G-~G~~l~~~~~ 413 (433)
.+++.+.++.. -..++..+++ +|.-. .-+++.||+++|+|+|+.+..+.+ ..+. ..| .|..++. .
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--~ 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--G 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC--C
Confidence 56777777733 3558888888 66543 246899999999999986544332 3342 444 7877764 3
Q ss_pred CCcccccchhhccccccc
Q 013951 414 LPITTSNYLCKISCNSQA 431 (433)
Q Consensus 414 ~~~~l~~ai~~il~~~~~ 431 (433)
+.+.+.++|.++++|++.
T Consensus 305 ~~~~~~~~i~~ll~~~~~ 322 (348)
T cd03820 305 DVEALAEALLRLMEDEEL 322 (348)
T ss_pred CHHHHHHHHHHHHcCHHH
Confidence 568999999999998753
No 61
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.84 E-value=2.4e-06 Score=78.82 Aligned_cols=277 Identities=19% Similarity=0.181 Sum_probs=146.4
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHH
Q 013951 16 LAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFAR 95 (433)
Q Consensus 16 ~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (433)
...-|+.-+..+.++|.++||+|.+.+-... ...+.++.. ++.+..+.. .+ .+ ....
T Consensus 8 ~~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~y-----g~~y~~iG~--------~g-~~-------~~~K 64 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDLY-----GIDYIVIGK--------HG-DS-------LYGK 64 (335)
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHHc-----CCCeEEEcC--------CC-CC-------HHHH
Confidence 4445999999999999999999999985532 344444433 777777631 11 01 0222
Q ss_pred HHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCCccc
Q 013951 96 FMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDSEYFN 175 (433)
Q Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (433)
+..... ..-.+.+++++ .+||++|+- .+..+..+|.-+|+|+|.+.=...........++ -.....
T Consensus 65 l~~~~~-R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P----------la~~i~ 130 (335)
T PF04007_consen 65 LLESIE-RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP----------LADVII 130 (335)
T ss_pred HHHHHH-HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh----------cCCeeE
Confidence 323222 23456666777 899999975 4457788999999999997433211100000000 000000
Q ss_pred CCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEE-EcChhhcchHHHHHHHhhcCCcEEEeCcCCCCCCCCc
Q 013951 176 IPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAI-INTFEELESPFIENYKKAKQGKVWCIGPASLCNKEPI 254 (433)
Q Consensus 176 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 254 (433)
.|.... ...+.. .-.+ ..+. .+.+.+ ..++=|.
T Consensus 131 ~P~~~~------------------~~~~~~---~G~~-~~i~~y~G~~E----------------~ayl~~F-------- 164 (335)
T PF04007_consen 131 TPEAIP------------------KEFLKR---FGAK-NQIRTYNGYKE----------------LAYLHPF-------- 164 (335)
T ss_pred CCcccC------------------HHHHHh---cCCc-CCEEEECCeee----------------EEeecCC--------
Confidence 110000 000000 0000 0011 122211 1222121
Q ss_pred cccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcC----CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhc
Q 013951 255 DKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICN----LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLV 330 (433)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 330 (433)
.++++..+-+... +.+.|++-+-+... .....+..+++.+++.+..+|...+...+.+ +
T Consensus 165 ----------~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~------~ 227 (335)
T PF04007_consen 165 ----------KPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRE------L 227 (335)
T ss_pred ----------CCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhh------H
Confidence 1233333444422 34577777766433 2345567788999998877444433322211 1
Q ss_pred hhhHHHHhCCCCeEE-eCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccc
Q 013951 331 QENFEERIKGRGLLI-RGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRI 404 (433)
Q Consensus 331 p~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~ 404 (433)
-+ .-++.+ ..-+.-.++|.++++ +|+-|| ....||..-|+|.|-+ +.++-...-+.+. +.|.
T Consensus 228 ~~-------~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gl 290 (335)
T PF04007_consen 228 FE-------KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGL 290 (335)
T ss_pred Hh-------ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCC
Confidence 11 112332 344555689999999 999888 5778999999999975 2233223335564 6665
No 62
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.84 E-value=2.7e-06 Score=80.46 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=60.6
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeec----------ccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccce
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLT----------HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIG 405 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~It----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G 405 (433)
..+|+.+.+++|+.+ ++..+++ +|. -|.-+++.||+++|+|+|+.+.. .....+ +....|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCce
Confidence 357899999998654 6667887 555 23356899999999999986542 233456 465578
Q ss_pred EEeeeeccCCcccccchhhcccccc
Q 013951 406 VSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 406 ~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
..++.. +.+.+.++|.++++|+.
T Consensus 307 ~~~~~~--~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 307 LLVPPG--DPEALADAIERLLDDPE 329 (355)
T ss_pred EEeCCC--CHHHHHHHHHHHHhCHH
Confidence 777542 67889999999988764
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.79 E-value=3.9e-06 Score=81.22 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeec---ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
.+++.+.+++|+. .+|+.+++ +|. +.|. .++.||+++|+|+|+... ......+ ++.+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 5689999999875 46888888 663 2333 489999999999998653 3455567 57777887764
Q ss_pred cCCcccccchhhcccccc
Q 013951 413 DLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~~ 430 (433)
-+.+.+.++|.++++++.
T Consensus 353 ~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 353 HDPADWADALARLLDDPR 370 (405)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 367889999999998764
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.79 E-value=2.2e-06 Score=81.19 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=84.3
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEE-EeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---hhcC
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPFVWV-IRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL---ILSH 357 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~ 357 (433)
.+++..|+... ...+..++++++... ++-+. +|.+..... +.+-.+.....+||.+.+++|+.+ ++..
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~-~~~l~i~G~g~~~~~-----~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALP-DAPLVIVGEGPLEAE-----LEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhcc-CcEEEEEeCChhHHH-----HHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 56677787643 345667788888776 33333 333321111 111111222467999999999754 7777
Q ss_pred CCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhh-ccceEEeeeeccCCcccccchhhccccccc
Q 013951 358 PAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNV-LRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 358 ~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~-~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
+++-++.+ +.|.| ++.||+++|+|+|+....+ ....+ +. .+.|...+. -+.+.+.++|.++++|++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i-~~~~~~g~~~~~--~d~~~~~~~i~~l~~~~~~ 335 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYV-NLHGVTGLVVPP--GDPAALAEAIRRLLEDPEL 335 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHH-hhCCCceEEeCC--CCHHHHHHHHHHHHHCHHH
Confidence 88833333 23444 7899999999999865443 33444 34 567776653 3678999999999998753
No 65
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.78 E-value=1.9e-06 Score=81.94 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=59.4
Q ss_pred CCCeEEeCccc-Hh---hhhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 340 GRGLLIRGWAP-QV---LILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 340 ~~nv~~~~~~p-q~---~lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..++...+|++ +. .+++.+++ +|.- |..+++.||+++|+|+|+... ......+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 46788889998 43 46888888 7764 335689999999999997643 3344455 45557776664
Q ss_pred ccCCcccccchhhcccccc
Q 013951 412 VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~~ 430 (433)
.+.+.+.++|.++++|++
T Consensus 315 -~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 315 -GDPEDLAEGIEWLLADPD 332 (365)
T ss_pred -CCHHHHHHHHHHHHhCHH
Confidence 356789999999998764
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.74 E-value=6.7e-06 Score=77.95 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=59.8
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeecc---cc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~ItH---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..+|+.+.+++++.+ ++..+++ +|.- .| ..++.||+++|+|+|+.+ .......+ +. +.|...+.
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~- 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD- 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC-
Confidence 357899999999654 5777887 5532 22 457899999999999865 44556667 46 88877764
Q ss_pred ccCCcccccchhhccccc
Q 013951 412 VDLPITTSNYLCKISCNS 429 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~ 429 (433)
+.+.+.++|.++++|+
T Consensus 331 --~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 331 --DVDALAAALRRALELP 346 (375)
T ss_pred --ChHHHHHHHHHHHhCH
Confidence 3489999999999885
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.73 E-value=3.7e-06 Score=81.92 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=59.3
Q ss_pred CeEEeCcccH-hhhhcCCCceeeecc-----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC
Q 013951 342 GLLIRGWAPQ-VLILSHPAVGGFLTH-----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP 415 (433)
Q Consensus 342 nv~~~~~~pq-~~lL~~~~~~~~ItH-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 415 (433)
++++.+...+ ..+++.+++ ++.. ||..++.||+++|+|+|.-|..+++......+ ++.|+++... +.
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~----d~ 375 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE----DA 375 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC----CH
Confidence 3444443332 456777887 4432 23335899999999999999988888888888 4777766532 66
Q ss_pred cccccchhhccccccc
Q 013951 416 ITTSNYLCKISCNSQA 431 (433)
Q Consensus 416 ~~l~~ai~~il~~~~~ 431 (433)
+.+.++|.++++|++.
T Consensus 376 ~~La~~l~~ll~~~~~ 391 (425)
T PRK05749 376 EDLAKAVTYLLTDPDA 391 (425)
T ss_pred HHHHHHHHHHhcCHHH
Confidence 8899999999988743
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.72 E-value=4e-06 Score=78.68 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=79.3
Q ss_pred EEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHh-CCCCeEEeCcccHhh---hhcCC
Q 013951 283 VYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERI-KGRGLLIRGWAPQVL---ILSHP 358 (433)
Q Consensus 283 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~~---lL~~~ 358 (433)
+.+..|... ..+....++++++..+.++++. |.....+... ....... ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~-G~~~~~~~~~-----~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLA-GPVSDPDYFY-----REIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEE-eCCCCHHHHH-----HHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 334557663 3344566778888888776654 4432211111 0111111 368999999999854 57788
Q ss_pred Cceeeec--ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccc
Q 013951 359 AVGGFLT--HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 359 ~~~~~It--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
++-++-+ +-|. .++.||+++|+|+|+... ......+ +....|...+. .+.+.++|.++++.
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~~----~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVDS----VEELAAAVARADRL 308 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeCC----HHHHHHHHHHHhcc
Confidence 8833333 2343 479999999999998754 3444556 45447777653 77888888887653
No 69
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.71 E-value=2.4e-05 Score=75.96 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=80.1
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCC--CCEE-EEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---hh
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASN--KPFV-WVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL---IL 355 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i-~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL 355 (433)
.+++..|++.. .+.+..++++++... ..+- ..+|.+...+.++ ....+...+|+.+.+++|+.+ ++
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~------~~~~~~~l~~v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVICGQGGGKARLE------KMAQCRGLPNVHFLPLQPYDRLPALL 301 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHH------HHHHHcCCCceEEeCCCCHHHHHHHH
Confidence 55566787743 334556666665432 1233 3445443211111 111122235899999998754 68
Q ss_pred cCCCceeeecccch------hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 356 SHPAVGGFLTHCGW------NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 356 ~~~~~~~~ItHGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
+.+++-++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+.++. -+.+++.++|.++++|+
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~--~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP--ESVEALVAAIAALARQA 374 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC--CCHHHHHHHHHHHHhCH
Confidence 88888555444332 236899999999999864321 122344 4 78888765 35688999999998876
Q ss_pred c
Q 013951 430 Q 430 (433)
Q Consensus 430 ~ 430 (433)
+
T Consensus 375 ~ 375 (412)
T PRK10307 375 L 375 (412)
T ss_pred H
Confidence 3
No 70
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.70 E-value=1.3e-05 Score=77.37 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=55.1
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
.++|.+.+|+|+.+ +++.+++ +|. +-|.| ++.||+++|+|+|+....+ ....+ ++ |.+.....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~~~-- 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLAEP-- 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-CceeecCC--
Confidence 56789899998654 6777887 653 33444 9999999999999876542 33455 34 44433322
Q ss_pred cCCcccccchhhccccc
Q 013951 413 DLPITTSNYLCKISCNS 429 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~ 429 (433)
+.+.+.++|.+++++.
T Consensus 319 -~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 319 -DVESIVRKLEEAISIL 334 (398)
T ss_pred -CHHHHHHHHHHHHhCh
Confidence 6788999999988764
No 71
>PLN02275 transferase, transferring glycosyl groups
Probab=98.67 E-value=9.6e-05 Score=70.57 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCeEEeC-cccHhhh---hcCCCceeeec-c-----cc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEee
Q 013951 341 RGLLIRG-WAPQVLI---LSHPAVGGFLT-H-----CG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVG 409 (433)
Q Consensus 341 ~nv~~~~-~~pq~~l---L~~~~~~~~It-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~ 409 (433)
+|+.+.. |+|+.++ |+.+++ +|. + -| -+++.||+++|+|+|.... ..+...+ ++.+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 5666655 7887654 888888 663 1 12 3479999999999999743 3466677 6878898875
Q ss_pred eeccCCcccccchhhcc
Q 013951 410 VEVDLPITTSNYLCKIS 426 (433)
Q Consensus 410 ~~~~~~~~l~~ai~~il 426 (433)
+.+.+.++|.++|
T Consensus 359 ----~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ----SSSELADQLLELL 371 (371)
T ss_pred ----CHHHHHHHHHHhC
Confidence 4678888888765
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.67 E-value=1.9e-05 Score=75.99 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=59.9
Q ss_pred CCCCeEEeCcccHh---hhhcCCCceeeecc---cc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 339 KGRGLLIRGWAPQV---LILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 339 ~~~nv~~~~~~pq~---~lL~~~~~~~~ItH---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..+||.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-. ......+ ...+.|...+.
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~~- 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCEP- 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeCC-
Confidence 35799999999976 46777887 6532 22 2478899999999999743 3344556 46667877642
Q ss_pred ccCCcccccchhhcccccc
Q 013951 412 VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~~ 430 (433)
+.+.+.++|.+++++++
T Consensus 350 --~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 350 --TPEEFAEAMLKLANDPD 366 (392)
T ss_pred --CHHHHHHHHHHHHhChH
Confidence 67889999999998863
No 73
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.65 E-value=9.9e-06 Score=76.78 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred CCCCeEEeCcccH-hhhhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeecc
Q 013951 339 KGRGLLIRGWAPQ-VLILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVD 413 (433)
Q Consensus 339 ~~~nv~~~~~~pq-~~lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~ 413 (433)
..+++.+.++..+ ..++..+++ +|.- |--.++.||+++|+|+|+.... .....+ +. +.|..... -
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~~~~i-~~-~~~~~~~~--~ 316 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI----TKEVDL-TD-LVKFLSLD--E 316 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC----chhhhh-cc-CccEEeCC--C
Confidence 3578888887544 558888888 5542 4456899999999999986543 344556 46 66655432 2
Q ss_pred CCcccccchhhcccccccc
Q 013951 414 LPITTSNYLCKISCNSQAQ 432 (433)
Q Consensus 414 ~~~~l~~ai~~il~~~~~~ 432 (433)
+.+.++++|.++++|+..+
T Consensus 317 ~~~~~a~~i~~l~~~~~~~ 335 (358)
T cd03812 317 SPEIWAEEILKLKSEDRRE 335 (358)
T ss_pred CHHHHHHHHHHHHhCcchh
Confidence 4689999999999997543
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.65 E-value=5.4e-06 Score=77.75 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=78.1
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhh
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLI 354 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~l 354 (433)
..+++..|+... ......+++++... +.++++ +|.+....... +........+++.+.++.+. ..+
T Consensus 189 ~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~~~~~~~-----~~~~~~~~~~~v~~~g~~~~~~~~ 260 (353)
T cd03811 189 GPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVI-LGDGPLREELE-----ALAKELGLADRVHFLGFQSNPYPY 260 (353)
T ss_pred ceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEE-EcCCccHHHHH-----HHHHhcCCCccEEEecccCCHHHH
Confidence 366777787653 23344455555543 233333 34333211111 11111123568888888765 458
Q ss_pred hcCCCceeeec--c--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCccc---ccchhhccc
Q 013951 355 LSHPAVGGFLT--H--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITT---SNYLCKISC 427 (433)
Q Consensus 355 L~~~~~~~~It--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l---~~ai~~il~ 427 (433)
+..+++ +|. + |.-+++.||+++|+|+|+... ......+ +..+.|...+.+ +.+.+ .+++.++++
T Consensus 261 ~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 261 LKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVPVG--DEAALAAAALALLDLLL 331 (353)
T ss_pred HHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEECCC--CHHHHHHHHHHHHhccC
Confidence 888888 553 2 335689999999999998543 3666678 688888887653 44455 556666666
Q ss_pred ccc
Q 013951 428 NSQ 430 (433)
Q Consensus 428 ~~~ 430 (433)
+++
T Consensus 332 ~~~ 334 (353)
T cd03811 332 DPE 334 (353)
T ss_pred ChH
Confidence 653
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.63 E-value=1.1e-06 Score=81.77 Aligned_cols=128 Identities=10% Similarity=-0.061 Sum_probs=75.6
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHhCCCC-EEEEEeCCcchhhhhhhhchhhHHHHhC-CCCeEEeCcccHhhhhcCC
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEASNKP-FVWVIRGVSKLEALEKWLVQENFEERIK-GRGLLIRGWAPQVLILSHP 358 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~~lL~~~ 358 (433)
++|.+--||...--...+..++++......+ .++.+......+ .++.... ...+.+.+ .-.+++..+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~---------~i~~~~~~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGK---------DLKEIYGDISEFEISY--DTHKALLEA 236 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHH---------HHHHHHhcCCCcEEec--cHHHHHHhh
Confidence 5898999988652223344344555443221 233333222111 1111111 12233332 335688899
Q ss_pred CceeeecccchhhHHHHHHcCCcEEecccc--cccchhHHHhhh---hccceEEe-------------eeeccCCccccc
Q 013951 359 AVGGFLTHCGWNSSLEGISAGVQMLTWPLF--ADQFCNEKLIVN---VLRIGVSV-------------GVEVDLPITTSN 420 (433)
Q Consensus 359 ~~~~~ItHGG~gs~~eal~~GvP~v~~P~~--~DQ~~na~~v~e---~~G~G~~l-------------~~~~~~~~~l~~ 420 (433)
++ +|+-.|..|+ |+...|+|||+ ++- .-|+.||+++ . ..|+.-.+ -.++.+++.+.+
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 99 9999999999 99999999999 543 4688999998 5 55666444 234456666666
Q ss_pred chhh
Q 013951 421 YLCK 424 (433)
Q Consensus 421 ai~~ 424 (433)
++.+
T Consensus 312 ~i~~ 315 (347)
T PRK14089 312 AYKE 315 (347)
T ss_pred HHHH
Confidence 6654
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.62 E-value=1.1e-05 Score=76.49 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=58.8
Q ss_pred CCCCeEEeC-cccHh---hhhcCCCceeeec--c----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEe
Q 013951 339 KGRGLLIRG-WAPQV---LILSHPAVGGFLT--H----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSV 408 (433)
Q Consensus 339 ~~~nv~~~~-~~pq~---~lL~~~~~~~~It--H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l 408 (433)
..+|+.+.+ |+|+. .++..+++ +|. . |..+++.||+++|+|+|+.+..+ ...+ +..+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE
Confidence 356787765 48864 47777887 662 2 33568899999999999876543 3445 467778777
Q ss_pred eeeccCCcccccchhhcccccc
Q 013951 409 GVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 409 ~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+.. +.+.+.++|.++++|++
T Consensus 317 ~~~--d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 317 PPG--DPAALAEAIRRLLADPE 336 (366)
T ss_pred cCC--CHHHHHHHHHHHHcChH
Confidence 653 57889999999998853
No 77
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.61 E-value=5.4e-06 Score=78.58 Aligned_cols=324 Identities=15% Similarity=0.115 Sum_probs=164.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchh-hhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAA-RFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+||++++ +++-.+.=+-.+.++|.+. +.++.++.+....+ .+-.........+.++. . .........
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~-~---------~~~~~~~~~ 69 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID-E---------KIEILLDSD 69 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC-C---------ccccccCCC
Confidence 3788777 9999999999999999984 78988887663321 10000111100111111 0 000000000
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECC--CCc-chHHHHHHcCCCcEEEecchHHHHHHHhhhhccc
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDM--CFP-WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSK 162 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~--~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 162 (433)
. ..........+...+.+++++ .+||+||+-. ... ++..+|..+|||++-+.-+--..
T Consensus 70 ~------~~~~~~~~~~~~~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~----------- 130 (365)
T TIGR03568 70 S------NAGMAKSMGLTIIGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE----------- 130 (365)
T ss_pred C------CCCHHHHHHHHHHHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC-----------
Confidence 0 012333444556678889998 8999999654 333 78999999999998653221000
Q ss_pred cCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHH-hhc-CCcE
Q 013951 163 VHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYK-KAK-QGKV 240 (433)
Q Consensus 163 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~-~~~-~~~~ 240 (433)
+ .+ .+..+...+.+ .+..+..+-. ..+++. ... +.++
T Consensus 131 --------~-------~~-------------------eE~~r~~i~~l--a~l~f~~t~~-----~~~~L~~eg~~~~~i 169 (365)
T TIGR03568 131 --------G-------AI-------------------DESIRHAITKL--SHLHFVATEE-----YRQRVIQMGEDPDRV 169 (365)
T ss_pred --------C-------Cc-------------------hHHHHHHHHHH--HhhccCCCHH-----HHHHHHHcCCCCCcE
Confidence 0 00 01111110000 0011111111 111111 111 2356
Q ss_pred EEeCcCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCc--C-CChhhHHHHHHHHHhCCCCEEEEEe
Q 013951 241 WCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSIC--N-LPSSQLIELGLGLEASNKPFVWVIR 317 (433)
Q Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~ 317 (433)
..+|......-... ......++.+.+.-..+++.|+|++=... . ...+.+..+++++...+.++++.+.
T Consensus 170 ~~tG~~~iD~l~~~--------~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P 241 (365)
T TIGR03568 170 FNVGSPGLDNILSL--------DLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYP 241 (365)
T ss_pred EEECCcHHHHHHhh--------hccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEe
Confidence 66773222110000 00012223233221212358888875432 2 4456788899999888766666654
Q ss_pred CCcchhhhhhhhchhhHHHHhC-CCCeEEeCcccH---hhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccch
Q 013951 318 GVSKLEALEKWLVQENFEERIK-GRGLLIRGWAPQ---VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFC 393 (433)
Q Consensus 318 ~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq---~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~ 393 (433)
.....+.. +-+.+..... .+|+.+.+-+++ ..++.++++ +||.++.|. .||.+.|+|+|.+- +.+
T Consensus 242 ~~~p~~~~----i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~- 310 (365)
T TIGR03568 242 NADAGSRI----INEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ- 310 (365)
T ss_pred CCCCCchH----HHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc-
Confidence 33211000 0111111111 468888876554 557778888 999885555 99999999999774 211
Q ss_pred hHHHhhhhccceEE-eeeeccCCcccccchhhcccc
Q 013951 394 NEKLIVNVLRIGVS-VGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 394 na~~v~e~~G~G~~-l~~~~~~~~~l~~ai~~il~~ 428 (433)
.-+ +.|..+. +. .+.+.+.+++.+++++
T Consensus 311 --e~~--~~g~nvl~vg---~~~~~I~~a~~~~~~~ 339 (365)
T TIGR03568 311 --KGR--LRADSVIDVD---PDKEEIVKAIEKLLDP 339 (365)
T ss_pred --hhh--hhcCeEEEeC---CCHHHHHHHHHHHhCh
Confidence 111 2243322 32 3678888898886553
No 78
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.58 E-value=4.1e-05 Score=72.49 Aligned_cols=81 Identities=9% Similarity=-0.024 Sum_probs=56.4
Q ss_pred CCCeEEeCcccH-hhhhcCCCceeeec--ccc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC
Q 013951 340 GRGLLIRGWAPQ-VLILSHPAVGGFLT--HCG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP 415 (433)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~It--HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 415 (433)
.+||.+.++.+. ..++..+++-++-+ +-| -++++||+++|+|+|+.- -......+ +..+.|..++. -+.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i-~~~~~g~~~~~--~~~ 317 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETV-RPGETGLLVPP--GDA 317 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHH-hCCCceEEeCC--CCH
Confidence 468898888543 45788888833333 223 358999999999999864 33455566 56668887764 377
Q ss_pred cccccchhhccc
Q 013951 416 ITTSNYLCKISC 427 (433)
Q Consensus 416 ~~l~~ai~~il~ 427 (433)
+.+.++|.+++.
T Consensus 318 ~~l~~~i~~~~~ 329 (355)
T cd03819 318 EALAQALDQILS 329 (355)
T ss_pred HHHHHHHHHHHh
Confidence 889999865553
No 79
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.56 E-value=2e-05 Score=75.00 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=62.9
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeeecc----------cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceE
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFLTH----------CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGV 406 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~ 406 (433)
.+++.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|.-+.. .++..+ ++.+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 57899999998755 4778887 6532 2356899999999999987653 466677 5778888
Q ss_pred EeeeeccCCcccccchhhcccccc
Q 013951 407 SVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 407 ~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.++. -+.+.+.++|.++++|++
T Consensus 317 ~~~~--~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 317 LVPE--GDVAALAAALGRLLADPD 338 (367)
T ss_pred EECC--CCHHHHHHHHHHHHcCHH
Confidence 7764 356889999999998864
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.56 E-value=4.2e-05 Score=72.20 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=57.3
Q ss_pred CCCeEEeCcccH-hhhhcCCCceeeecccc----hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccC
Q 013951 340 GRGLLIRGWAPQ-VLILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDL 414 (433)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItHGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 414 (433)
.+++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+ ++ .|..++.+ +
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~~--~ 318 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPPG--D 318 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCCC--C
Confidence 456776665443 568888888 775443 47899999999999984 455566667 46 56666543 5
Q ss_pred Ccccccchhhcccccc
Q 013951 415 PITTSNYLCKISCNSQ 430 (433)
Q Consensus 415 ~~~l~~ai~~il~~~~ 430 (433)
.+.+.++|.+++++++
T Consensus 319 ~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 319 PEALAEAIEALLADPA 334 (365)
T ss_pred HHHHHHHHHHHHhChH
Confidence 7889999999998753
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.54 E-value=2.5e-05 Score=76.36 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=59.7
Q ss_pred CCCeEEeCcccHhhh---hcCC----Cceeeeccc---c-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEe
Q 013951 340 GRGLLIRGWAPQVLI---LSHP----AVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSV 408 (433)
Q Consensus 340 ~~nv~~~~~~pq~~l---L~~~----~~~~~ItHG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l 408 (433)
.++|.+.+++++.++ +..+ ++ ||.-. | -.+++||+++|+|+|+.-. ......+ +....|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 567888888887664 5444 45 77643 3 3489999999999998754 3455566 466678877
Q ss_pred eeeccCCcccccchhhcccccc
Q 013951 409 GVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 409 ~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+. -+.+.+.++|.++++|+.
T Consensus 389 ~~--~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 389 DV--LDLEAIASALEDALSDSS 408 (439)
T ss_pred CC--CCHHHHHHHHHHHHhCHH
Confidence 65 367889999999998864
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.50 E-value=1.5e-05 Score=75.88 Aligned_cols=136 Identities=16% Similarity=0.117 Sum_probs=82.7
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCE-EEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH--hh---hh
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPF-VWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ--VL---IL 355 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq--~~---lL 355 (433)
.+++..|.+.......+..+++++......+ ++.+|.+...+. +-+..++....++|.+.++.++ .. .+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~-----l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEK-----CKAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHH-----HHHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 4556667664323345667777777654333 334454432211 1111112223578999998753 33 34
Q ss_pred cCCCceeeec--c--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 356 SHPAVGGFLT--H--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 356 ~~~~~~~~It--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
..+++ +|. + |--.++.||+++|+|+|+.-. .......+ +....|..++. -+.+++.++|.++++|++
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv~~--~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELYTP--GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEECC--CCHHHHHHHHHHHHhCcc
Confidence 45666 664 2 335699999999999998641 22233456 46667877754 478999999999999886
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.46 E-value=1.9e-05 Score=74.91 Aligned_cols=129 Identities=9% Similarity=0.063 Sum_probs=76.3
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhh
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLI 354 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~l 354 (433)
..+++..|+... .+....++++++.. +.++++. |.+..... +-+........+|+.+.++..+ ..+
T Consensus 188 ~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~ 259 (360)
T cd04951 188 TFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIA-GDGPLRAT-----LERLIKALGLSNRVKLLGLRDDIAAY 259 (360)
T ss_pred CEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEE-cCCCcHHH-----HHHHHHhcCCCCcEEEecccccHHHH
Confidence 366777787643 33344455555432 3455544 33322111 1111111123468888887654 568
Q ss_pred hcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccc
Q 013951 355 LSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 355 L~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
+..+++ +|.- |.-+++.||+++|+|+|+ .|...+...+ +.. |..++. -+.+.+.++|.+++++
T Consensus 260 ~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i-~~~--g~~~~~--~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 260 YNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVV-GDS--GLIVPI--SDPEALANKIDEILKM 326 (360)
T ss_pred HHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEe-cCC--ceEeCC--CCHHHHHHHHHHHHhC
Confidence 888888 5543 224688999999999997 4556666677 564 444443 3677899999999844
No 84
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.45 E-value=9.1e-05 Score=77.43 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=86.1
Q ss_pred hhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCC-----CCEEEEEeCCcchhhh--------hhhhchhhHH
Q 013951 269 ECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASN-----KPFVWVIRGVSKLEAL--------EKWLVQENFE 335 (433)
Q Consensus 269 ~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~--------~~~~~p~~~~ 335 (433)
++..|+.. ++++ ++++.|.+.. .+.+..+++|+.... ..+.+.+|.+...... .. +-.-..
T Consensus 469 ~l~r~~~~-pdkp-vIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~--L~~li~ 542 (1050)
T TIGR02468 469 EIMRFFTN-PRKP-MILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTS--VLKLID 542 (1050)
T ss_pred HHHhhccc-CCCc-EEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHH--HHHHHH
Confidence 45666643 3333 4455576543 344566777776542 2444555653221100 00 000011
Q ss_pred HHhCCCCeEEeCcccHhhh---hcCCC--ceeeecc---cch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceE
Q 013951 336 ERIKGRGLLIRGWAPQVLI---LSHPA--VGGFLTH---CGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGV 406 (433)
Q Consensus 336 ~~~~~~nv~~~~~~pq~~l---L~~~~--~~~~ItH---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~ 406 (433)
.--..++|.+.+++++.++ +..++ ..+||.- =|+ .++.||+++|+|+|+.... .....+ +.-.-|+
T Consensus 543 ~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII-~~g~nGl 617 (1050)
T TIGR02468 543 KYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIH-RVLDNGL 617 (1050)
T ss_pred HhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHh-ccCCcEE
Confidence 1123578888899887653 44342 1227763 343 4888999999999998643 334455 4556788
Q ss_pred EeeeeccCCcccccchhhcccccc
Q 013951 407 SVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 407 ~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.++. -+.+.++++|.++++|++
T Consensus 618 LVdP--~D~eaLA~AL~~LL~Dpe 639 (1050)
T TIGR02468 618 LVDP--HDQQAIADALLKLVADKQ 639 (1050)
T ss_pred EECC--CCHHHHHHHHHHHhhCHH
Confidence 7765 467889999999999875
No 85
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.44 E-value=8.4e-07 Score=69.19 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=79.8
Q ss_pred EEEEeeCCCcCCC---hhhHHHHHHHHHhCCC-CEEEEEeCCcchhhhhhhhchhhHHHHhCCCC--eEEeCcccH-hhh
Q 013951 282 VVYVCLGSICNLP---SSQLIELGLGLEASNK-PFVWVIRGVSKLEALEKWLVQENFEERIKGRG--LLIRGWAPQ-VLI 354 (433)
Q Consensus 282 ~v~vs~Gs~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n--v~~~~~~pq-~~l 354 (433)
.+|||-||-...+ .-.-++..+.+.+.+. +.+..+|.+... .++..+....... +...+|-|- .+.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 7999999976311 1112345566777777 677888877321 2222221112233 334556675 555
Q ss_pred hcCCCceeeecccchhhHHHHHHcCCcEEeccc----ccccchhHHHhhhhccceEEeeee
Q 013951 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL----FADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 355 L~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
...+++ +|+|+|.||++|.+..|+|.|+++- -..|-.-|..++ +.|.=..=...
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C~ps 135 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYCTPS 135 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEeecc
Confidence 666777 9999999999999999999999994 357999999995 88875544443
No 86
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=0.00011 Score=68.34 Aligned_cols=312 Identities=13% Similarity=0.146 Sum_probs=169.9
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEE-CCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 11 LLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVT-TPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 11 l~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+-+=.-+.|-++-...|.++|.++ ++.|++-+ |+...+..++.. +..+....+|++
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D--------------- 110 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD--------------- 110 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC---------------
Confidence 333346889999999999999999 88998888 665555554432 222444444421
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCII-SDMCFP-WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHE 165 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI-~D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
....+.++++. ++||++| ++.=++ ....-+++.|+|.+.++.=-.-
T Consensus 111 ---------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~--------------- 158 (419)
T COG1519 111 ---------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSD--------------- 158 (419)
T ss_pred ---------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeech---------------
Confidence 12256778888 9999966 555444 5567777899999986321000
Q ss_pred CCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCCcEEEeCc
Q 013951 166 NVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGP 245 (433)
Q Consensus 166 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 245 (433)
.++ .+......+.+. .+.+.+.++.-+-.+ .+. +.+---+++...|-
T Consensus 159 -----------rS~--------------~~y~k~~~~~~~---~~~~i~li~aQse~D--~~R---f~~LGa~~v~v~GN 205 (419)
T COG1519 159 -----------RSF--------------ARYAKLKFLARL---LFKNIDLILAQSEED--AQR---FRSLGAKPVVVTGN 205 (419)
T ss_pred -----------hhh--------------HHHHHHHHHHHH---HHHhcceeeecCHHH--HHH---HHhcCCcceEEecc
Confidence 000 000001222222 223344444433222 222 22222244677776
Q ss_pred CCCCCCCCccccccCCCCCCCchh---hhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhC--CCCEEEEEeCCc
Q 013951 246 ASLCNKEPIDKAERGKTASIDVPE---CLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEAS--NKPFVWVIRGVS 320 (433)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 320 (433)
+=...... ..++.. +...+..+ + .+.|..+|+ ....+.+-+...++.+. +..+||+=...+
T Consensus 206 lKfd~~~~----------~~~~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHpE 271 (419)
T COG1519 206 LKFDIEPP----------PQLAAELAALRRQLGGH--R-PVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHPE 271 (419)
T ss_pred eeecCCCC----------hhhHHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCChh
Confidence 53221110 001222 33334332 2 455666663 33444455555556553 345566543322
Q ss_pred chhhhhhhhch--hhHH----HH----hCCCCeEEeCcccH-hhhhcCCCce----eeecccchhhHHHHHHcCCcEEec
Q 013951 321 KLEALEKWLVQ--ENFE----ER----IKGRGLLIRGWAPQ-VLILSHPAVG----GFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 321 ~~~~~~~~~~p--~~~~----~~----~~~~nv~~~~~~pq-~~lL~~~~~~----~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
......+ +- .++. .+ ..+.+|++.+-+-- ..+++-+++. -++-+||+| ..|++++|+|+|.=
T Consensus 272 Rf~~v~~--l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~G 348 (419)
T COG1519 272 RFKAVEN--LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFG 348 (419)
T ss_pred hHHHHHH--HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeC
Confidence 2111100 00 0010 00 01224555444332 2233333331 145699997 68999999999999
Q ss_pred ccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 386 PLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 386 P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
|+..-|.+.++++ +..|.|+.++. .+.+.+++..+++|++
T Consensus 349 p~~~Nf~ei~~~l-~~~ga~~~v~~----~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 349 PYTFNFSDIAERL-LQAGAGLQVED----ADLLAKAVELLLADED 388 (419)
T ss_pred CccccHHHHHHHH-HhcCCeEEECC----HHHHHHHHHHhcCCHH
Confidence 9999999999999 69999999984 5577777877777643
No 87
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.41 E-value=4.3e-06 Score=80.68 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCCeEEeCcccH-hhhhcCCCceeee--cc--cchh-hHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 339 KGRGLLIRGWAPQ-VLILSHPAVGGFL--TH--CGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 339 ~~~nv~~~~~~pq-~~lL~~~~~~~~I--tH--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
..+||.+.+++++ ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. .. +..|.|+.+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC---
Confidence 3578999999986 347888888 65 32 4554 699999999999998753221 22 2456777664
Q ss_pred cCCcccccchhhcccccc
Q 013951 413 DLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~~ 430 (433)
-+.+.+.++|.++++|++
T Consensus 347 ~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 347 ADPADFAAAILALLANPA 364 (397)
T ss_pred CCHHHHHHHHHHHHcCHH
Confidence 378899999999998864
No 88
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.39 E-value=0.00026 Score=67.97 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=80.1
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhC--CCCEEEEEeCCcchhhhhhhhchhhHHHH-hCCCCeEE-eCcccHhh---h
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEAS--NKPFVWVIRGVSKLEALEKWLVQENFEER-IKGRGLLI-RGWAPQVL---I 354 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~-~~~~pq~~---l 354 (433)
.+++..|.... .+.+..++++++.. +.++++..++......... +.+..... ...+++.. .+++++.+ +
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 277 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEE--VRQAVALLDRNRTGIIWINKMLPKEELVEL 277 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHH--HHHHHHHhccccCceEEecCCCCHHHHHHH
Confidence 45566677643 34466677777664 4455554443322110100 11111110 01234554 46777644 6
Q ss_pred hcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC----cccccchhhcc
Q 013951 355 LSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP----ITTSNYLCKIS 426 (433)
Q Consensus 355 L~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~----~~l~~ai~~il 426 (433)
+..+++ +|.= |.-.++.||+++|+|+|+... ......+ +..+.|..++..+.+. +.+.++|.+++
T Consensus 278 ~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 278 LSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNSDADGFQAELAKAINILL 350 (388)
T ss_pred HHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCCcccchHHHHHHHHHHHH
Confidence 778888 6642 223467999999999998653 4466667 5777888887654333 67888898888
Q ss_pred cccc
Q 013951 427 CNSQ 430 (433)
Q Consensus 427 ~~~~ 430 (433)
+|++
T Consensus 351 ~~~~ 354 (388)
T TIGR02149 351 ADPE 354 (388)
T ss_pred hCHH
Confidence 8764
No 89
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.34 E-value=0.00017 Score=68.38 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=73.2
Q ss_pred EEeeCCCcCCChhhHHHHHHHHHhCCCC-EEEEEeCCcchhhhhhhhchhhHH-HHhCCCCeEEeCcccHhh---hhcCC
Q 013951 284 YVCLGSICNLPSSQLIELGLGLEASNKP-FVWVIRGVSKLEALEKWLVQENFE-ERIKGRGLLIRGWAPQVL---ILSHP 358 (433)
Q Consensus 284 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~p~~~~-~~~~~~nv~~~~~~pq~~---lL~~~ 358 (433)
++..|++.. .+.+..++++++..... -++.+|........ -+.+. .....++|.+.+++|+.+ ++..+
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~-----~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPY-----GKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCcchH-----HHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 345677643 34566677777765432 23444543221111 11121 122467999999999865 55566
Q ss_pred Cceeeecccch-----hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 359 AVGGFLTHCGW-----NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 359 ~~~~~ItHGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
++ ++.+.-. +++.||+++|+|+|+....+ +...+ +. .|...+..+ .+.++|.++++|+
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~~----~l~~~i~~l~~~~ 331 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVGD----DLASLLEELEADP 331 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCch----HHHHHHHHHHhCH
Confidence 66 5554332 47899999999999875432 33334 34 333333222 2889999998875
No 90
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.31 E-value=8.7e-05 Score=70.98 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=58.6
Q ss_pred CCCeEEeCcccH-hhhhcCCCceeee--cc--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccC
Q 013951 340 GRGLLIRGWAPQ-VLILSHPAVGGFL--TH--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDL 414 (433)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~I--tH--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 414 (433)
.+++.+.++..+ ..++..+++ +| ++ |--.++.||+++|+|+|+... ..+...+ ++-..|..++. -+
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~--~d 324 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPP--GD 324 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCC--CC
Confidence 456666665433 567888888 66 33 345689999999999999654 3456667 56667877764 35
Q ss_pred Ccccccchhhcccccc
Q 013951 415 PITTSNYLCKISCNSQ 430 (433)
Q Consensus 415 ~~~l~~ai~~il~~~~ 430 (433)
.+.+.++|.++++|++
T Consensus 325 ~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 325 AVALARALQPYVSDPA 340 (374)
T ss_pred HHHHHHHHHHHHhCHH
Confidence 6789999999988763
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.0012 Score=67.46 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=79.2
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHh----CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhhc
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEA----SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLILS 356 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL~ 356 (433)
.+++..|.+.. .+....+++++.. .+.--+|.+|++...+.+.. -.++....++|.+.+|.++ ..++.
T Consensus 518 ~vIg~VGRL~~--~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~-----l~~~lgL~~~V~flG~~~dv~~ll~ 590 (694)
T PRK15179 518 FTVGTVMRVDD--NKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVRE-----FAQRLGMGERILFTGLSRRVGYWLT 590 (694)
T ss_pred eEEEEEEeCCc--cCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHH-----HHHHcCCCCcEEEcCCcchHHHHHH
Confidence 45556666532 2334445555543 33333556665432221111 1111123578999899875 44788
Q ss_pred CCCceeeec---ccc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccc
Q 013951 357 HPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 357 ~~~~~~~It---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~ 427 (433)
.+++ +|. +.| -+++.||+.+|+|+|+... ......+ ++-..|+.++..+.+.+.+.+++.++++
T Consensus 591 aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV-~dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 591 QFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAV-QEGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred hcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHc-cCCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 8888 654 455 4588899999999999764 2355567 4666798888766666666777666554
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.26 E-value=0.00011 Score=72.20 Aligned_cols=180 Identities=13% Similarity=-0.038 Sum_probs=93.8
Q ss_pred hhcchHHHHHHHhhcCCcEEEeC-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHH
Q 013951 222 EELESPFIENYKKAKQGKVWCIG-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIE 300 (433)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~ 300 (433)
.-+|.+++. ..+-++.||| |+....+.. ...++..+-+.-.+++++|-+-.||-..-=...+..
T Consensus 369 fPFE~~~y~----~~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv 433 (608)
T PRK01021 369 LPFEQNLFK----DSPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTI 433 (608)
T ss_pred CccCHHHHH----hcCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 345555553 3467899999 886542210 012333333333334568889888875422223334
Q ss_pred HHHHHH--hC--CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCC---eEEeCcccHhhhhcCCCceeeecccchhhHH
Q 013951 301 LGLGLE--AS--NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRG---LLIRGWAPQVLILSHPAVGGFLTHCGWNSSL 373 (433)
Q Consensus 301 ~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n---v~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~ 373 (433)
++++.+ .. +.++++........ +.+++.....+ +.+..--...+++..|++ .+.-.|. .++
T Consensus 434 ~l~aa~~~~l~~~l~fvvp~a~~~~~---------~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTL 501 (608)
T PRK01021 434 QVQAFLASSLASTHQLLVSSANPKYD---------HLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVL 501 (608)
T ss_pred HHHHHHHHHhccCeEEEEecCchhhH---------HHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHH
Confidence 566655 32 34555543332211 11111111111 222211012578988998 8888776 567
Q ss_pred HHHHcCCcEEeccc-ccccchhHHHhhhh------------ccceEEee----eeccCCcccccchhhcccccc
Q 013951 374 EGISAGVQMLTWPL-FADQFCNEKLIVNV------------LRIGVSVG----VEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 374 eal~~GvP~v~~P~-~~DQ~~na~~v~e~------------~G~G~~l~----~~~~~~~~l~~ai~~il~~~~ 430 (433)
|+...|+|||++=- ..=-...++++. + +|=.+.-. .++.+++.+.+++ ++|+|++
T Consensus 502 EaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~ 573 (608)
T PRK01021 502 ETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQ 573 (608)
T ss_pred HHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHH
Confidence 99999999999631 111223455554 3 12222211 2456778888886 7777753
No 93
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=0.00049 Score=63.50 Aligned_cols=326 Identities=13% Similarity=0.099 Sum_probs=170.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCC-CEEEEEECCcch--hhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHG-AIVTIVTTPVNA--ARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rG-H~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (433)
|+++||+++. |++=.+.=+-.|.+++.+.+ .+..++.|.... +......+.+ ++.. |..+-.+-.
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~-----~i~~-----pdy~L~i~~- 68 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF-----GIRK-----PDYDLNIMK- 68 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh-----CCCC-----CCcchhccc-
Confidence 4567787776 99999999999999999986 666666665443 3322222211 2221 111100000
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECC--CCc-chHHHHHHcCCCcEEEecchHHHHHHHhhh
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDM--CFP-WTVDTAAKFNVPRIIFHGFSCFCLFCHHLL 158 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~--~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 158 (433)
. ...+......+...+.+++.+ .+||+|++.. .+. ++..+|.+.+||+.-+-.+--
T Consensus 69 -------~---~~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR--------- 127 (383)
T COG0381 69 -------P---GQTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR--------- 127 (383)
T ss_pred -------c---CCCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc---------
Confidence 0 112334444566778888888 9999999644 443 668899999999876522210
Q ss_pred hccccCCCCCCCCCcccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhhcCC
Q 013951 159 GVSKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQG 238 (433)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 238 (433)
.-..+ +|..+..+..+...-+.-.......+.+.+ .-.++
T Consensus 128 ------------t~~~~---~PEE~NR~l~~~~S~~hfapte~ar~nLl~-------------------------EG~~~ 167 (383)
T COG0381 128 ------------TGDLY---FPEEINRRLTSHLSDLHFAPTEIARKNLLR-------------------------EGVPE 167 (383)
T ss_pred ------------cCCCC---CcHHHHHHHHHHhhhhhcCChHHHHHHHHH-------------------------cCCCc
Confidence 00011 111100000000000000001111111111 12222
Q ss_pred -cEEEeCcCCCCCCCCccccccCCCCCCCchhhhhh-hccCCCCeEEEEeeCCCcCCChhhHHHHHHHHH----hC-CCC
Q 013951 239 -KVWCIGPASLCNKEPIDKAERGKTASIDVPECLTW-LDSQQPSSVVYVCLGSICNLPSSQLIELGLGLE----AS-NKP 311 (433)
Q Consensus 239 -~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~----~~-~~~ 311 (433)
++..+|-.....-.. .+.. . ..+...... +.... +..++||+=-..+.. +.+..+.+++. .. +..
T Consensus 168 ~~IfvtGnt~iDal~~----~~~~-~-~~~~~~~~~~~~~~~-~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~ 239 (383)
T COG0381 168 KRIFVTGNTVIDALLN----TRDR-V-LEDSKILAKGLDDKD-KKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVI 239 (383)
T ss_pred cceEEeCChHHHHHHH----HHhh-h-ccchhhHHhhhcccc-CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCce
Confidence 355555221110000 0000 0 001111111 22222 348888875444444 44555555544 34 344
Q ss_pred EEEEEeCCcchhhhhhhhchhhHHHHhC-CCCeEEeC---cccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc
Q 013951 312 FVWVIRGVSKLEALEKWLVQENFEERIK-GRGLLIRG---WAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 387 (433)
Q Consensus 312 ~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~---~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~ 387 (433)
+|...-.... .++ +. ..++. .+|+.+.+ +.+...++.++-+ ++|-.| |-.-||-..|+|++++=.
T Consensus 240 viyp~H~~~~---v~e---~~--~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 240 VIYPVHPRPR---VRE---LV--LKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRD 308 (383)
T ss_pred EEEeCCCChh---hhH---HH--HHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeecc
Confidence 4444433311 111 00 12222 34677644 5677888988877 999877 244579999999999999
Q ss_pred ccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 388 FADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 388 ~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
..+++. ++ ++|.-+.+.. +.+.+.+++.+++++++
T Consensus 309 ~TERPE---~v--~agt~~lvg~---~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 309 TTERPE---GV--EAGTNILVGT---DEENILDAATELLEDEE 343 (383)
T ss_pred CCCCcc---ce--ecCceEEeCc---cHHHHHHHHHHHhhChH
Confidence 999998 34 6677777775 55899999999998854
No 94
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.23 E-value=0.0001 Score=69.18 Aligned_cols=182 Identities=16% Similarity=0.062 Sum_probs=95.3
Q ss_pred hcchHHHHHHHhhcCCcEEEeC-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHH
Q 013951 223 ELESPFIENYKKAKQGKVWCIG-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIEL 301 (433)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 301 (433)
-+|.+++. ..+-++.||| |+........ .+....+.+ -.+++++|-+-.||-..-=...+..+
T Consensus 142 PFE~~~y~----~~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~ 205 (373)
T PF02684_consen 142 PFEPEFYK----KHGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIF 205 (373)
T ss_pred cccHHHHh----ccCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 34555543 3446799999 8865433211 123333333 22345689998888754112223334
Q ss_pred HHHHHh-----CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEE-eCcccHhhhhcCCCceeeecccchhhHHHH
Q 013951 302 GLGLEA-----SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLI-RGWAPQVLILSHPAVGGFLTHCGWNSSLEG 375 (433)
Q Consensus 302 ~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~ItHGG~gs~~ea 375 (433)
+++.+. .+.++++............ ..... ...++.+ ...-.-.++|..+++ .+.-.|. .++|+
T Consensus 206 l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~------~~~~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~ 275 (373)
T PF02684_consen 206 LEAAKLLKKQRPDLQFVVPVAPEVHEELIE------EILAE-YPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEA 275 (373)
T ss_pred HHHHHHHHHhCCCeEEEEecCCHHHHHHHH------HHHHh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHH
Confidence 454433 2446666554432211000 00001 1222222 122345668888888 7777775 57899
Q ss_pred HHcCCcEEecccc-cccchhHHHhhhhccc-e-----------EEeeeeccCCcccccchhhccccccc
Q 013951 376 ISAGVQMLTWPLF-ADQFCNEKLIVNVLRI-G-----------VSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 376 l~~GvP~v~~P~~-~DQ~~na~~v~e~~G~-G-----------~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
...|+|||++=-. .=-+..|++++ +... | --+-.++.+++.+.+++.++|+|++.
T Consensus 276 Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 276 ALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEK 343 (373)
T ss_pred HHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHH
Confidence 9999999987321 12233444443 2221 1 11223456778888899999988743
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.23 E-value=0.00061 Score=65.14 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCCeEEeCcc--cHh---hhhcCCCceeeeccc---c-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeee
Q 013951 340 GRGLLIRGWA--PQV---LILSHPAVGGFLTHC---G-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGV 410 (433)
Q Consensus 340 ~~nv~~~~~~--pq~---~lL~~~~~~~~ItHG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~ 410 (433)
.+++.+.++. ++. .+++.+++ |+.-. | -.++.||+++|+|+|+... ......+ +.-+.|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhc-ccCCceEEeC-
Confidence 4677777776 433 46777787 77532 3 3489999999999998653 3344456 4666777654
Q ss_pred eccCCcccccchhhcccccc
Q 013951 411 EVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 411 ~~~~~~~l~~ai~~il~~~~ 430 (433)
+.+.+.++|.+++++++
T Consensus 323 ---~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 323 ---TVEEAAVRILYLLRDPE 339 (372)
T ss_pred ---CcHHHHHHHHHHHcCHH
Confidence 45677788999988764
No 96
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.21 E-value=0.0009 Score=64.81 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=72.4
Q ss_pred EeeCCCcCCChhhHHHHHHHHHhC----CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCc
Q 013951 285 VCLGSICNLPSSQLIELGLGLEAS----NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAV 360 (433)
Q Consensus 285 vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 360 (433)
+..|-+.. .+.+..++++++.. +.--++.+|++...+.++. +- .+..-+...+.++.+..+++...++
T Consensus 232 l~vGRL~~--eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~--~a----~~l~l~~~vf~G~~~~~~~~~~~Dv 303 (462)
T PLN02846 232 YYIGKMVW--SKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKA--AA----EKLELDVRVYPGRDHADPLFHDYKV 303 (462)
T ss_pred EEEecCcc--cCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHH--HH----HhcCCcEEEECCCCCHHHHHHhCCE
Confidence 34455543 44566666666542 2222555676654322221 10 1111112235566677779988888
Q ss_pred eeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 361 GGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 361 ~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
||.= |--.++.||+++|+|+|+.-..+ + ..+ +.-+-|...+ +.+.+.++|.++|+++
T Consensus 304 --Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~~----~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 304 --FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTYD----DGKGFVRATLKALAEE 364 (462)
T ss_pred --EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEecC----CHHHHHHHHHHHHccC
Confidence 8876 33568889999999999986443 2 344 3545554442 5668888888887753
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.19 E-value=0.00082 Score=65.24 Aligned_cols=81 Identities=16% Similarity=-0.031 Sum_probs=56.0
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeecc---cch-hhHHHHHHcCCcEEecccccccchhHHHhhh---hccceEEe
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVN---VLRIGVSV 408 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~ItH---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e---~~G~G~~l 408 (433)
..++|.+.+++|+.+ +|..+++ +|+- -|. -++.||+++|+|+|+.-..+. ....+ + .-..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv-~~~~~g~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIV-VPWDGGPTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chhee-eccCCCCceEEe
Confidence 357899999998765 6777777 5532 122 378999999999998643221 11223 3 45577664
Q ss_pred eeeccCCcccccchhhccccc
Q 013951 409 GVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 409 ~~~~~~~~~l~~ai~~il~~~ 429 (433)
+ +.+.+.++|.++++++
T Consensus 377 ~----d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 S----TAEEYAEAIEKILSLS 393 (419)
T ss_pred C----CHHHHHHHHHHHHhCC
Confidence 2 7889999999999865
No 98
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.18 E-value=9.7e-05 Score=69.94 Aligned_cols=82 Identities=9% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..+|+.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+... ......+ +.. |..++..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~~~--~~~~~~~ 321 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-GDA--ALYFDPL 321 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-cCc--eeeeCCC
Confidence 467899999998764 6777777 5532 334589999999999998543 2222334 333 4444432
Q ss_pred ccCCcccccchhhccccccc
Q 013951 412 VDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~~~ 431 (433)
+.+.+.++|.++++|++.
T Consensus 322 --~~~~~~~~i~~l~~~~~~ 339 (365)
T cd03809 322 --DPEALAAAIERLLEDPAL 339 (365)
T ss_pred --CHHHHHHHHHHHhcCHHH
Confidence 678899999998887653
No 99
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.11 E-value=0.00021 Score=67.64 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=84.6
Q ss_pred EEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHh---hhhcCCCc
Q 013951 284 YVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQV---LILSHPAV 360 (433)
Q Consensus 284 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~ 360 (433)
++..|++.. ......++++++..+.++++ +|.+... +.+++ ...+||.+.+++|+. .+++.+++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~~~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGPEL---------DRLRA-KAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECChhH---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 345566543 34567788888888866554 4443221 11212 346899999999985 46778888
Q ss_pred eeeecccchh-hHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccc
Q 013951 361 GGFLTHCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 361 ~~~ItHGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
-++-+.-|.| ++.||+++|+|+|+.... .....+ ++.+.|..++.+ +.+.+.++|.++++|+
T Consensus 265 ~v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i-~~~~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 FLFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETV-IDGVTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred EEECCcCCCCchHHHHHHcCCCEEEeCCC----CCccee-eCCCCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 3333444443 567999999999997643 344556 476788888653 5677999999999887
No 100
>PLN02949 transferase, transferring glycosyl groups
Probab=98.04 E-value=0.0028 Score=62.03 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCCCeEEeCcccHhh---hhcCCCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhh-cc-ceEEee
Q 013951 339 KGRGLLIRGWAPQVL---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNV-LR-IGVSVG 409 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~---lL~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~-~G-~G~~l~ 409 (433)
..++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+. .| .|...+
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~~ 407 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLAT 407 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccCC
Confidence 357899999998765 5677777 663 33444 789999999999998654310 0112011 12 343332
Q ss_pred eeccCCcccccchhhcccc
Q 013951 410 VEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 410 ~~~~~~~~l~~ai~~il~~ 428 (433)
+.+.++++|.+++++
T Consensus 408 ----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 408 ----TVEEYADAILEVLRM 422 (463)
T ss_pred ----CHHHHHHHHHHHHhC
Confidence 678999999999874
No 101
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.03 E-value=0.002 Score=62.28 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHh---CCCCE-EEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh---
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEA---SNKPF-VWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL--- 353 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~--- 353 (433)
++.+++.|.... .+.+..++++++. .+..+ ++.+|.+...+. +.....+.-..+++.+.+|+|+.+
T Consensus 222 ~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~-----l~~~~~~~~l~~~V~~~G~~~~~el~~ 294 (406)
T PRK15427 222 PLEIISVARLTE--KKGLHVAIEACRQLKEQGVAFRYRILGIGPWERR-----LRTLIEQYQLEDVVEMPGFKPSHEVKA 294 (406)
T ss_pred CeEEEEEeCcch--hcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHH-----HHHHHHHcCCCCeEEEeCCCCHHHHHH
Confidence 355566677653 3344555555543 23333 333454432211 111111112357899999999865
Q ss_pred hhcCCCceeeec--c-------cch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchh
Q 013951 354 ILSHPAVGGFLT--H-------CGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLC 423 (433)
Q Consensus 354 lL~~~~~~~~It--H-------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~ 423 (433)
++..+++ +|. . -|. .++.||+++|+|+|+.... .....+ +.-..|..++. -+.+.+.++|.
T Consensus 295 ~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~lv~~--~d~~~la~ai~ 365 (406)
T PRK15427 295 MLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWLVPE--NDAQALAQRLA 365 (406)
T ss_pred HHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEEeCC--CCHHHHHHHHH
Confidence 6777888 664 2 344 5689999999999987543 344556 46667877764 36789999999
Q ss_pred hccc-ccc
Q 013951 424 KISC-NSQ 430 (433)
Q Consensus 424 ~il~-~~~ 430 (433)
++++ |++
T Consensus 366 ~l~~~d~~ 373 (406)
T PRK15427 366 AFSQLDTD 373 (406)
T ss_pred HHHhCCHH
Confidence 9998 764
No 102
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.94 E-value=0.0089 Score=61.46 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=51.5
Q ss_pred CCCeEEeCcc-cH---hhhhcC----CCceeeec---ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEE
Q 013951 340 GRGLLIRGWA-PQ---VLILSH----PAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVS 407 (433)
Q Consensus 340 ~~nv~~~~~~-pq---~~lL~~----~~~~~~It---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~ 407 (433)
.++|.+.++. +. .+++.+ +++ ||. .=|. .++.||+++|+|+|+.- .......+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHh-cCCCcEEE
Confidence 5678877764 32 234432 234 663 2333 38899999999999864 44566677 47677888
Q ss_pred eeeeccCCcccccchhhcc
Q 013951 408 VGVEVDLPITTSNYLCKIS 426 (433)
Q Consensus 408 l~~~~~~~~~l~~ai~~il 426 (433)
++.. +.+.+.++|.+++
T Consensus 691 Vdp~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDPY--HGEEAAEKIVDFF 707 (784)
T ss_pred eCCC--CHHHHHHHHHHHH
Confidence 8763 5677888888765
No 103
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.92 E-value=2.8e-05 Score=72.94 Aligned_cols=254 Identities=14% Similarity=0.109 Sum_probs=125.3
Q ss_pred HHHHHHhHHHHHHHHHhCCCCCcEEEE--CCCCc-chHHHHHHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCCc
Q 013951 97 MKSLHMLQQPFENLFKEKTLKPCCIIS--DMCFP-WTVDTAAKFNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDSEY 173 (433)
Q Consensus 97 ~~~~~~~~~~l~~~l~~~~~~pD~vI~--D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (433)
......+...+.+++++ .+||+||+ |.+.. +++.+|..++||++-+... .... ..
T Consensus 49 ~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs~------------------d~- 106 (346)
T PF02350_consen 49 AKSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRSG------------------DR- 106 (346)
T ss_dssp HHHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S-------------------T-
T ss_pred HHHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCcc------------------cc-
Confidence 34445567788888888 89999885 54444 7799999999997654222 1110 00
Q ss_pred ccCCCCCCCccccccccCccCCCCcHHHHHHHHHHhcccccEEEEcChhhcchHHHHHHHhh-c-CCcEEEeCcCCCCCC
Q 013951 174 FNIPGLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKA-K-QGKVWCIGPASLCNK 251 (433)
Q Consensus 174 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~-~-~~~~~~vGpl~~~~~ 251 (433)
.-+. .++..+..... -++..+..+-..-+ ++.+. . +.+++.||......-
T Consensus 107 --~~g~-------------------~de~~R~~i~~--la~lhf~~t~~~~~-----~L~~~G~~~~rI~~vG~~~~D~l 158 (346)
T PF02350_consen 107 --TEGM-------------------PDEINRHAIDK--LAHLHFAPTEEARE-----RLLQEGEPPERIFVVGNPGIDAL 158 (346)
T ss_dssp --TSST-------------------THHHHHHHHHH--H-SEEEESSHHHHH-----HHHHTT--GGGEEE---HHHHHH
T ss_pred --CCCC-------------------chhhhhhhhhh--hhhhhccCCHHHHH-----HHHhcCCCCCeEEEEChHHHHHH
Confidence 0001 23333333222 23334444433221 12121 1 257888884322110
Q ss_pred CCccccccCCCCCCCchhh--hhhhccCCCCeEEEEeeCCCcCCC-h---hhHHHHHHHHHhC-CCCEEEEEeCCcchhh
Q 013951 252 EPIDKAERGKTASIDVPEC--LTWLDSQQPSSVVYVCLGSICNLP-S---SQLIELGLGLEAS-NKPFVWVIRGVSKLEA 324 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~ 324 (433)
.. ... ...++. ..++.. .+++.++|++=...... + +.+..+++++... +.++||.+.......
T Consensus 159 ~~----~~~----~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~- 228 (346)
T PF02350_consen 159 LQ----NKE----EIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS- 228 (346)
T ss_dssp HH----HHH----TTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH-
T ss_pred HH----hHH----HHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH-
Confidence 00 000 001111 122222 44679999985544444 3 3344456666665 778999987543211
Q ss_pred hhhhhchhhHHHHhC-CCCeEEeCcccH---hhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhh
Q 013951 325 LEKWLVQENFEERIK-GRGLLIRGWAPQ---VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVN 400 (433)
Q Consensus 325 ~~~~~~p~~~~~~~~-~~nv~~~~~~pq---~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e 400 (433)
..+.+... -+|+.+.+-+++ ..+|.++++ +|+..| |-.-||.+.|+|+|.+ -|+-..=.-+
T Consensus 229 -------~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-- 293 (346)
T PF02350_consen 229 -------DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-- 293 (346)
T ss_dssp -------HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH--
T ss_pred -------HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH--
Confidence 11222221 148988877765 557778888 999999 4444999999999999 2222222222
Q ss_pred hccceEEeeeeccCCcccccchhhcccc
Q 013951 401 VLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 401 ~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
..|..+.+. .+.+.+.++|.+++++
T Consensus 294 ~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 294 ERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred hhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 335555533 5889999999999976
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.81 E-value=0.006 Score=60.19 Aligned_cols=133 Identities=11% Similarity=-0.016 Sum_probs=71.1
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHh---CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeE-EeCcccH--hhhh
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEA---SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLL-IRGWAPQ--VLIL 355 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~pq--~~lL 355 (433)
.+++..|.+.. .+.+..++++++. .+.++++. |.+... ..+. + .....+ .+.++. ..++-.+ ..++
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~~~-~~~~--l-~~l~~~-~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGDPE-LEEA--F-RALAAR-YPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCcHH-HHHH--H-HHHHHH-CCCcEEEEEeCCHHHHHHHH
Confidence 45566677643 2334445555543 35565554 443211 0000 1 111112 234554 3455322 2467
Q ss_pred cCCCceeeec---ccchh-hHHHHHHcCCcEEeccccc--ccchhHHHhhhhccceEEeeeeccCCcccccchhhccc
Q 013951 356 SHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFA--DQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 356 ~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~ 427 (433)
+.+++ +|. +-|.| +.+||+++|+|.|+.-..+ |...+...- +..+.|..++. -+.+.+.++|.++++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~--~d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD--FNAEDLLRALRRALE 427 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC--CCHHHHHHHHHHHHH
Confidence 88888 664 34554 7889999999999865422 222111111 13377888765 356788899988875
No 105
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.78 E-value=0.0056 Score=53.41 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCeEEeCcccH----hhhhcCCCceeeecccc----hhhHHHHHHcCCcEEeccccccc
Q 013951 340 GRGLLIRGWAPQ----VLILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFADQ 391 (433)
Q Consensus 340 ~~nv~~~~~~pq----~~lL~~~~~~~~ItHGG----~gs~~eal~~GvP~v~~P~~~DQ 391 (433)
.+|+.+.+++++ ..++..+++ +|+-.. .+++.||+.+|+|+|+....+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 468888888632 223434777 777765 68999999999999998865543
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.75 E-value=0.0076 Score=59.70 Aligned_cols=84 Identities=10% Similarity=-0.101 Sum_probs=51.5
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeecc---cch-hhHHHHHHcCCcEEeccccc--ccchhHHHhhhhccceEEeee
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFA--DQFCNEKLIVNVLRIGVSVGV 410 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~e~~G~G~~l~~ 410 (433)
.+|+.+....++. .+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |--...... ...|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 4677654333333 36777887 6642 122 37789999999999865432 222222222 13457888775
Q ss_pred eccCCcccccchhhcccc
Q 013951 411 EVDLPITTSNYLCKISCN 428 (433)
Q Consensus 411 ~~~~~~~l~~ai~~il~~ 428 (433)
.+.+.+.++|.+++++
T Consensus 427 --~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 --YNADALLAALRRALAL 442 (476)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 3567888999888753
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.0034 Score=57.95 Aligned_cols=180 Identities=16% Similarity=0.049 Sum_probs=89.4
Q ss_pred cchHHHHHHHhhcCCcEEEeC-cCCCCCCCCccccccCCCCCCCchhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHH
Q 013951 224 LESPFIENYKKAKQGKVWCIG-PASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELG 302 (433)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 302 (433)
+|+++++. .+-+..||| |+....+.. ...+.+.+-+....+++++.+-.||-..-=...+..+.
T Consensus 146 FE~~~y~k----~g~~~~yVGHpl~d~i~~~-----------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 146 FEPAFYDK----FGLPCTYVGHPLADEIPLL-----------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred CCHHHHHh----cCCCeEEeCChhhhhcccc-----------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 45555542 334489999 775443211 12333444444344456899999987541122222333
Q ss_pred HHHHh-----CCCCEEEEEeCCcchhhhhhhhchhhHHHHhC-CCCeEEeCcccHhhhhcCCCceeeecccchhhHHHHH
Q 013951 303 LGLEA-----SNKPFVWVIRGVSKLEALEKWLVQENFEERIK-GRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGI 376 (433)
Q Consensus 303 ~al~~-----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal 376 (433)
++... .+.++++-+....... +-..+..+.. ..++.+.+.- -...+..+++ .+.-+|. -++|+.
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~--al~aSGT-~tLE~a 280 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAKYRR------IIEEALKWEVAGLSLILIDGE-KRKAFAAADA--ALAASGT-ATLEAA 280 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHHHHH------HHHHHhhccccCceEEecCch-HHHHHHHhhH--HHHhccH-HHHHHH
Confidence 33332 2457777665432111 1111111111 1222222211 1235667777 7777775 457999
Q ss_pred HcCCcEEecccc-cccchhHHHhhhhccceE------------EeeeeccCCcccccchhhccccc
Q 013951 377 SAGVQMLTWPLF-ADQFCNEKLIVNVLRIGV------------SVGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 377 ~~GvP~v~~P~~-~DQ~~na~~v~e~~G~G~------------~l~~~~~~~~~l~~ai~~il~~~ 429 (433)
.+|+|||+.=-. .=-...+++.+ .....- -+-.++.+++.+.+++.++++|+
T Consensus 281 L~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 281 LAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred HhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 999999986210 00122333333 222211 11123466788888888888887
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00019 Score=55.20 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=78.0
Q ss_pred EEEeeCCCcCCChhhHH--HHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhhcCCC
Q 013951 283 VYVCLGSICNLPSSQLI--ELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLILSHPA 359 (433)
Q Consensus 283 v~vs~Gs~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL~~~~ 359 (433)
+|||-||....=.+... ++..-.+.-..++|+.+|.+.- .|- .+-.++-..+.+- +.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kpv------agl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KPV------AGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------ccc------cccEEEeechHHHHHHHhhcce
Confidence 78999998431111111 1222223345688999988642 220 0112333333443 44555555
Q ss_pred ceeeecccchhhHHHHHHcCCcEEeccccc--------ccchhHHHhhhhccceEEeeeecc-CCcccccchhhcc
Q 013951 360 VGGFLTHCGWNSSLEGISAGVQMLTWPLFA--------DQFCNEKLIVNVLRIGVSVGVEVD-LPITTSNYLCKIS 426 (433)
Q Consensus 360 ~~~~ItHGG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~e~~G~G~~l~~~~~-~~~~l~~ai~~il 426 (433)
+ +|+|+|.||++.++..++|.+++|-.. .|-..|..++ +.+.=+...+-+. -.+.++....+++
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spte~~L~a~l~~s~~~v~ 140 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPTELVLQAGLQVSVADVL 140 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCCchhhHHhHhhhhhhhc
Confidence 5 999999999999999999999999543 5888899997 8887766653332 3444444444444
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.71 E-value=0.027 Score=53.86 Aligned_cols=79 Identities=18% Similarity=0.030 Sum_probs=53.0
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeee------cccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEee
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFL------THCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVG 409 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~I------tHGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~ 409 (433)
.+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+.++...
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEeC
Confidence 57999999998766 56678873332 23333 358999999999998752 2334 3444333332
Q ss_pred eeccCCcccccchhhccccc
Q 013951 410 VEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 410 ~~~~~~~~l~~ai~~il~~~ 429 (433)
-+.+.+.++|.+++.++
T Consensus 325 ---~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 325 ---DDPEEFVAAIEKALLED 341 (373)
T ss_pred ---CCHHHHHHHHHHHHhcC
Confidence 27889999999976543
No 110
>PLN00142 sucrose synthase
Probab=97.69 E-value=0.0065 Score=62.52 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=50.8
Q ss_pred CCCeEEeCc----ccHhhhhc----CCCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhhccceEE
Q 013951 340 GRGLLIRGW----APQVLILS----HPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVS 407 (433)
Q Consensus 340 ~~nv~~~~~----~pq~~lL~----~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~ 407 (433)
.++|.+.+. .+..++.. .+++ ||. .-|.| ++.||+++|+|+|+.. .......+ +.-.-|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV-~dG~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEII-VDGVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHh-cCCCcEEE
Confidence 456765543 33344443 2345 664 34555 8999999999999864 34455667 46667888
Q ss_pred eeeeccCCcccccchhh----ccccc
Q 013951 408 VGVEVDLPITTSNYLCK----ISCNS 429 (433)
Q Consensus 408 l~~~~~~~~~l~~ai~~----il~~~ 429 (433)
++.. +.+.++++|.+ +++|+
T Consensus 714 V~P~--D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 714 IDPY--HGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred eCCC--CHHHHHHHHHHHHHHhcCCH
Confidence 8763 55667777654 44564
No 111
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.63 E-value=0.014 Score=57.73 Aligned_cols=79 Identities=10% Similarity=-0.097 Sum_probs=52.6
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhhc------cceE
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVL------RIGV 406 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~------G~G~ 406 (433)
..++.+....+.. .+++.+++ +|. +-|.| +.+||+++|+|+|+.... .....+ +.. +.|.
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~v-~~~~~~~~~~~G~ 417 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTG----GLADTV-VDGDPEAESGTGF 417 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCC----CccceE-ecCCCCCCCCceE
Confidence 4567665555553 47778888 663 22444 788999999999986543 233334 243 7787
Q ss_pred EeeeeccCCcccccchhhccc
Q 013951 407 SVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 407 ~l~~~~~~~~~l~~ai~~il~ 427 (433)
.++. -+.+.+.++|.++++
T Consensus 418 l~~~--~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 418 LFEE--YDPGALLAALSRALR 436 (473)
T ss_pred EeCC--CCHHHHHHHHHHHHH
Confidence 7764 366789999998876
No 112
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.50 E-value=0.039 Score=49.39 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHH
Q 013951 16 LAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFAR 95 (433)
Q Consensus 16 ~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (433)
.-.-|+.-+..|-.+|.++||+|.+.+-... .+.+..+-. |+.+..+.- .+.. .+..
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~y-----gf~~~~Igk--------~g~~--------tl~~ 64 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDLY-----GFPYKSIGK--------HGGV--------TLKE 64 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHHh-----CCCeEeecc--------cCCc--------cHHH
Confidence 4556888999999999999999988874432 344444332 676666531 1100 1221
Q ss_pred HHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecc
Q 013951 96 FMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (433)
.+.......-.+.+++.+ .+||+.+. -++.....+|--+|+|.+.+.-.
T Consensus 65 Kl~~~~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 65 KLLESAERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 111112223467788888 99999999 67788999999999999997433
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.40 E-value=0.017 Score=57.24 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=60.9
Q ss_pred CCCCeEEeCcccHhhhhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhc------cceEEe
Q 013951 339 KGRGLLIRGWAPQVLILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVL------RIGVSV 408 (433)
Q Consensus 339 ~~~nv~~~~~~pq~~lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~------G~G~~l 408 (433)
..+||.+.+...-..+++.+++ +|.- |--.++.||+++|+|+|+. |.......+ +.. ..|..+
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv 424 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVV 424 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEE
Confidence 3578998886666778888888 6533 3345899999999999984 445555566 452 267776
Q ss_pred eeeccCCcccccchhhcccccc
Q 013951 409 GVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 409 ~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+. -+.+.+.++|.++++|++
T Consensus 425 ~~--~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 425 PP--ADPEALARAILRLLKDPE 444 (475)
T ss_pred CC--CCHHHHHHHHHHHhcCHH
Confidence 64 467889999999998864
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.37 E-value=0.00048 Score=57.80 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=86.1
Q ss_pred CeEEEEeeCCCcCCChhhHHHHHHHHHhC----CCC-EEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH---
Q 013951 280 SSVVYVCLGSICNLPSSQLIELGLGLEAS----NKP-FVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ--- 351 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~-~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq--- 351 (433)
++.+++..|+... ...+..+++++... ... .++.+|....... +-.........+++.+.++.++
T Consensus 14 ~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~l 86 (172)
T PF00534_consen 14 KKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKE-----LKNLIEKLNLKENIIFLGYVPDDEL 86 (172)
T ss_dssp TSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHH-----HHHHHHHTTCGTTEEEEESHSHHHH
T ss_pred CCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccc-----ccccccccccccccccccccccccc
Confidence 3466677777654 34455556665542 333 3444452221111 1111112224578888899873
Q ss_pred hhhhcCCCceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccc
Q 013951 352 VLILSHPAVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 352 ~~lL~~~~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~ 427 (433)
..++..+++ +|+. |+..++.||+++|+|+|+. |...+...+ +..+.|..++.. +.+.+.++|.++++
T Consensus 87 ~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~~--~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 87 DELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDPN--DIEELADAIEKLLN 157 (172)
T ss_dssp HHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEESTT--SHHHHHHHHHHHHH
T ss_pred cccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCCC--CHHHHHHHHHHHHC
Confidence 457778888 7766 5667999999999999974 466677777 577779888764 88999999999998
Q ss_pred ccc
Q 013951 428 NSQ 430 (433)
Q Consensus 428 ~~~ 430 (433)
+++
T Consensus 158 ~~~ 160 (172)
T PF00534_consen 158 DPE 160 (172)
T ss_dssp HHH
T ss_pred CHH
Confidence 874
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.30 E-value=0.013 Score=55.94 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=61.6
Q ss_pred CCCCeEEeCcccH-hhhhcCCCceeeecc--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC
Q 013951 339 KGRGLLIRGWAPQ-VLILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP 415 (433)
Q Consensus 339 ~~~nv~~~~~~pq-~~lL~~~~~~~~ItH--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 415 (433)
..+++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++. -+.
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~--~d~ 332 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK--GDI 332 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC--CcH
Confidence 3567888877665 347888888555554 33458999999999999864321 234556 46678887765 467
Q ss_pred cccccchhhcccccc
Q 013951 416 ITTSNYLCKISCNSQ 430 (433)
Q Consensus 416 ~~l~~ai~~il~~~~ 430 (433)
+.+.++|.++++|++
T Consensus 333 ~~la~~i~~ll~~~~ 347 (372)
T cd04949 333 EALAEAIIELLNDPK 347 (372)
T ss_pred HHHHHHHHHHHcCHH
Confidence 889999999998863
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.27 E-value=0.0017 Score=62.88 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=82.6
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhC-----CCCEEEEE-eCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhh--
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEAS-----NKPFVWVI-RGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVL-- 353 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~-~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~-- 353 (433)
..+++.|.+... ..+..+++++... +.++.|.+ |++.....++ +........++|.+.+|+++.+
T Consensus 231 ~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~-----~~~~~~~~~~~V~f~G~v~~~e~~ 303 (407)
T cd04946 231 LRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLK-----ELAESKPENISVNFTGELSNSEVY 303 (407)
T ss_pred EEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHH-----HHHHhcCCCceEEEecCCChHHHH
Confidence 556677776542 2344455555432 24676664 4332211111 1111112356789999999865
Q ss_pred -hhcCCCceeeecccc----hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccc
Q 013951 354 -ILSHPAVGGFLTHCG----WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 354 -lL~~~~~~~~ItHGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
++..+++.++|...- -.+++||+++|+|+|+.. -......+ ++.+.|..+... .+.+++.++|.++++|
T Consensus 304 ~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~~-~~~~~la~~I~~ll~~ 377 (407)
T cd04946 304 KLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSKD-PTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCCC-CCHHHHHHHHHHHHhC
Confidence 444444444765442 457999999999999854 34456677 466688877642 3678999999999987
Q ss_pred cc
Q 013951 429 SQ 430 (433)
Q Consensus 429 ~~ 430 (433)
++
T Consensus 378 ~~ 379 (407)
T cd04946 378 EE 379 (407)
T ss_pred HH
Confidence 64
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.16 E-value=0.069 Score=52.98 Aligned_cols=135 Identities=10% Similarity=0.124 Sum_probs=81.7
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHh----CCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcC
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEA----SNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSH 357 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~ 357 (433)
.++++.|.+.. ...+..+++|+.. .+.--++.+|.+...+. +.+-.+.....++|.+.++.+...++..
T Consensus 320 ~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~-----l~~~i~~~~l~~~V~f~G~~~~~~~~~~ 392 (500)
T TIGR02918 320 FSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQK-----LQKIINENQAQDYIHLKGHRNLSEVYKD 392 (500)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHH-----HHHHHHHcCCCCeEEEcCCCCHHHHHHh
Confidence 45566677643 3445556666543 22222344565543211 1111111123577888899888889999
Q ss_pred CCceeeec---ccch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee--ccC----Ccccccchhhccc
Q 013951 358 PAVGGFLT---HCGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE--VDL----PITTSNYLCKISC 427 (433)
Q Consensus 358 ~~~~~~It---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~--~~~----~~~l~~ai~~il~ 427 (433)
+++ +|. .-|. .++.||+++|+|+|+.-.. ..+...+ +.-.-|..++.. .-+ .+.++++|.++++
T Consensus 393 adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 393 YEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred CCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 988 664 3444 4889999999999997532 1244456 465678777632 122 6778899999885
Q ss_pred cc
Q 013951 428 NS 429 (433)
Q Consensus 428 ~~ 429 (433)
++
T Consensus 467 ~~ 468 (500)
T TIGR02918 467 SN 468 (500)
T ss_pred hH
Confidence 43
No 118
>PLN02316 synthase/transferase
Probab=97.08 E-value=0.48 Score=50.58 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=50.6
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeecc---cch-hhHHHHHHcCCcEEeccccc--ccchhH----HHhh--hhccc
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPLFA--DQFCNE----KLIV--NVLRI 404 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na----~~v~--e~~G~ 404 (433)
++++.+....+.. .+++.+++ |+.- =|. .+.+||+++|+|.|+.-..+ |..... .+.. ...+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3566665444443 47777887 7742 222 38889999999888765432 222111 1110 01246
Q ss_pred eEEeeeeccCCcccccchhhcccc
Q 013951 405 GVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 405 G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
|...+. .+.+.+.++|.++|.+
T Consensus 977 Gflf~~--~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 977 GFSFDG--ADAAGVDYALNRAISA 998 (1036)
T ss_pred eEEeCC--CCHHHHHHHHHHHHhh
Confidence 766654 4677888888888865
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.03 E-value=0.00078 Score=53.94 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCCeEEeCcccH-hhhhcCCCceeeecc---cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC
Q 013951 340 GRGLLIRGWAPQ-VLILSHPAVGGFLTH---CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP 415 (433)
Q Consensus 340 ~~nv~~~~~~pq-~~lL~~~~~~~~ItH---GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 415 (433)
.+|+.+.+|++. .++++.+++.+..+. |-.+++.|++++|+|+|+.+. ...... +..|.|..+ .-+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~---~~~~ 122 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV---ANDP 122 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE----TT-H
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE---CCCH
Confidence 369999999864 447888998666542 234899999999999999775 233455 467888777 2388
Q ss_pred cccccchhhcccc
Q 013951 416 ITTSNYLCKISCN 428 (433)
Q Consensus 416 ~~l~~ai~~il~~ 428 (433)
+.+.++|.++++|
T Consensus 123 ~~l~~~i~~l~~d 135 (135)
T PF13692_consen 123 EELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999876
No 120
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.00 E-value=0.026 Score=52.62 Aligned_cols=133 Identities=11% Similarity=-0.038 Sum_probs=75.4
Q ss_pred CeEEEEeeCCCcC---CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhh
Q 013951 280 SSVVYVCLGSICN---LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLIL 355 (433)
Q Consensus 280 ~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL 355 (433)
++.|.+..|+... .+.+.+.++++.+.+.+.++++..++..+.+ .-+.+.+.....++.-..-++| ..++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~------~~~~i~~~~~~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQ------RAERIAEALPGAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH------HHHHHHhhCCCCeecCCCCHHHHHHHH
Confidence 4466666665332 6678888999888776777776655432211 1112222211222221123444 5588
Q ss_pred cCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccce---EEe-eeeccCCcccccchhhcc
Q 013951 356 SHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIG---VSV-GVEVDLPITTSNYLCKIS 426 (433)
Q Consensus 356 ~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G---~~l-~~~~~~~~~l~~ai~~il 426 (433)
+++++ +|+. -.|.++=|...|+|+|.+=-..+ ..+-. =.|-. +.- ..+.++.+++.++|+++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~-P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTG-GYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----Hhhcc-cCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 89998 9987 57888889999999998621111 11110 11111 111 256678888888887765
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.92 E-value=0.068 Score=53.87 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=72.9
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhC----CCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHh-hhhc
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEAS----NKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQV-LILS 356 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~-~lL~ 356 (433)
++|| |-+. ..+.+..++++++.. +.-.++.+|.+...+.++. .. .+ ..-++.+.++.++. ++++
T Consensus 549 iLfV--GRLa--~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~-----la-~e-LgL~V~FLG~~dd~~~lya 617 (794)
T PLN02501 549 AYFL--GKMV--WAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQR-----AA-KR-LDLNLNFLKGRDHADDSLH 617 (794)
T ss_pred eEEE--Eccc--ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHH-----HH-HH-cCCEEEecCCCCCHHHHHH
Confidence 5665 4332 344566677776542 2223445565543222211 01 11 12246667777755 4888
Q ss_pred CCCceeeec---ccc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccccc
Q 013951 357 HPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 357 ~~~~~~~It---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
.+++ ||. .=| ..++.||+++|+|+|+.-..+.. .+ .. |.+..+. -+.+.+.++|.++|+++.
T Consensus 618 saDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e-----~V-~~-g~nGll~---~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 618 GYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE-----FF-RS-FPNCLTY---KTSEDFVAKVKEALANEP 683 (794)
T ss_pred hCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc-----eE-ee-cCCeEec---CCHHHHHHHHHHHHhCch
Confidence 8888 775 233 45788999999999998765422 13 23 3333332 367889999999998764
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.87 E-value=0.0066 Score=58.48 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHH-hCCCCeEEeCcccHhhhh--
Q 013951 279 PSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEER-IKGRGLLIRGWAPQVLIL-- 355 (433)
Q Consensus 279 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq~~lL-- 355 (433)
++.++|.||.+....+++.+..-.+.|+..+.-.+|........+ .. +-..+.+. ...+.+.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--~~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--AR--LRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--HH--HHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--HH--HHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 345999999999999999999999999999999999887653221 11 21222221 235678888887765544
Q ss_pred -cCCCceeee---cccchhhHHHHHHcCCcEEecccccc-cchhHHHhhhhccceEE
Q 013951 356 -SHPAVGGFL---THCGWNSSLEGISAGVQMLTWPLFAD-QFCNEKLIVNVLRIGVS 407 (433)
Q Consensus 356 -~~~~~~~~I---tHGG~gs~~eal~~GvP~v~~P~~~D-Q~~na~~v~e~~G~G~~ 407 (433)
..+++ ++ ..+|..|++|||+.|||+|.+|--.= ...-+..+ ..+|+.-.
T Consensus 359 ~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~El 412 (468)
T PF13844_consen 359 YQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPEL 412 (468)
T ss_dssp GGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGG
T ss_pred hhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchh
Confidence 34555 54 46788999999999999999994322 22333445 46666643
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.77 E-value=0.026 Score=45.26 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
||++++.....| ...+++.|.++||+|++++.......... ..++.+..++. +. ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~-------~~-----k~- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPS-------PR-----KS- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecC-------CC-----Cc-
Confidence 477777655555 56889999999999999998644322111 12677777632 10 00
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcC-CCcEEEe
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFN-VPRIIFH 145 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~g-iP~v~~~ 145 (433)
. + .+. . +. .+.+++++ .+||+|.+..... .+..++...+ +|+|...
T Consensus 57 -~--~-~~~---~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 57 -P--L-NYI---K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -c--H-HHH---H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 0 1 111 1 22 77888988 8999999887654 2344567778 8988643
No 124
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.46 E-value=0.026 Score=54.04 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCCeEEeCcccHhh---hhcCCCceeeecc----cch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 340 GRGLLIRGWAPQVL---ILSHPAVGGFLTH----CGW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 340 ~~nv~~~~~~pq~~---lL~~~~~~~~ItH----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..++.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+... ..+...+ +....|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhc-ccCCceEEEeC-
Confidence 46888899998654 5888888 6642 443 477899999999999764 3345566 46667864432
Q ss_pred ccCCcccccchhhcccccc
Q 013951 412 VDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 412 ~~~~~~l~~ai~~il~~~~ 430 (433)
..+.+.+.++|.++++|++
T Consensus 328 ~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 328 PMTSDSIISDINRTLADPE 346 (380)
T ss_pred CCCHHHHHHHHHHHHcCHH
Confidence 2368899999999998874
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.24 E-value=0.74 Score=44.48 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=64.1
Q ss_pred EEeeCCCcCCChhhHHHHHHHHHhCCCCE-EEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCccc-H---hhhhcCC
Q 013951 284 YVCLGSICNLPSSQLIELGLGLEASNKPF-VWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAP-Q---VLILSHP 358 (433)
Q Consensus 284 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p-q---~~lL~~~ 358 (433)
++..|.........+..+++|+...+..+ ++.+|.+... . .+++...++.. + ..+++.+
T Consensus 244 il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~-------~---------~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 244 IAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF-------T---------AGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc-------c---------ccceEEecCcCCHHHHHHHHHhC
Confidence 34445432222344577888888765544 4445543211 1 24555556542 3 3345557
Q ss_pred Cceeeecc----cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccch
Q 013951 359 AVGGFLTH----CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYL 422 (433)
Q Consensus 359 ~~~~~ItH----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai 422 (433)
++ ||.- |--.++.||+++|+|+|.....+ ....+ +. +-|..++.. +.+.|++++
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~--d~~~La~~~ 365 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE--EVLQLAQLS 365 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC--CHHHHHhcc
Confidence 77 6652 33458899999999999987654 23344 34 568877654 334454443
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.043 Score=53.23 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHH-----hCCCCeEEeCcccHh
Q 013951 278 QPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEER-----IKGRGLLIRGWAPQV 352 (433)
Q Consensus 278 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~nv~~~~~~pq~ 352 (433)
+++-+||+||+......++.+..=++.++..+.-++|..+++.+.+.. ..+++. .....+++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~------~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEIN------ARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHH------HHHHHHHHHcCCChhheeecCCCCCH
Confidence 345699999999999999999988999999999999999886544322 223322 245677777766644
Q ss_pred h---hhcCCCceeeec---ccchhhHHHHHHcCCcEEecccccccch--hHHHhhhhccceEEe
Q 013951 353 L---ILSHPAVGGFLT---HCGWNSSLEGISAGVQMLTWPLFADQFC--NEKLIVNVLRIGVSV 408 (433)
Q Consensus 353 ~---lL~~~~~~~~It---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~e~~G~G~~l 408 (433)
+ =+..+++ |.. -||+.|..|+|..|||||..+ ++|+- |+.-++..+|+-..+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 3 3444555 664 699999999999999999987 66652 333333455554443
No 127
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.06 E-value=1.4 Score=41.78 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=61.8
Q ss_pred CeEEEEeeCCCcC---CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCC-eEEeCc--ccH-h
Q 013951 280 SSVVYVCLGSICN---LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRG-LLIRGW--APQ-V 352 (433)
Q Consensus 280 ~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~n-v~~~~~--~pq-~ 352 (433)
++.|.+..|+... .+.+.+.++++.+.+.+.++++.-+..+.+... -+.+.+.....+ +.+.+- +.+ .
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~-----~~~i~~~~~~~~~~~l~g~~sL~el~ 257 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLAC-----VNEIAQGCQTPPVTALAGKTTFPELG 257 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHH-----HHHHHHhcCCCccccccCCCCHHHHH
Confidence 3577788887543 677888899999887788877664443221110 011111111122 223332 344 4
Q ss_pred hhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 353 LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 353 ~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
.++.++++ +|++ -.|-++=|.+.|+|+|.+
T Consensus 258 ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 258 ALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 58889998 9988 577888899999999977
No 128
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.79 E-value=0.0091 Score=48.87 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 013951 23 PMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMKSLHM 102 (433)
Q Consensus 23 P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
-+..|+++|.++||+|+++++........ ....++.+..++.+... .. .....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~---~~~~~---------- 58 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WP---LRLLR---------- 58 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SG---GGHCC----------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hh---hhhHH----------
Confidence 46789999999999999999764443111 11235777776542111 00 00000
Q ss_pred hHHHHHHHH--HhCCCCCcEEEECCCCc-chHHHHH-HcCCCcEEEe
Q 013951 103 LQQPFENLF--KEKTLKPCCIISDMCFP-WTVDTAA-KFNVPRIIFH 145 (433)
Q Consensus 103 ~~~~l~~~l--~~~~~~pD~vI~D~~~~-~~~~~A~-~~giP~v~~~ 145 (433)
....+.+++ ++ .+||+|.+..... ....+++ ..++|+|...
T Consensus 59 ~~~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 59 FLRRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 113344445 55 8999999887432 3334444 8899998854
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.77 E-value=0.014 Score=43.39 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=45.8
Q ss_pred chhhhhhhccCCCCeEEEEeeCCCcCC---C--hhhHHHHHHHHHhCCCCEEEEEeCCcc
Q 013951 267 VPECLTWLDSQQPSSVVYVCLGSICNL---P--SSQLIELGLGLEASNKPFVWVIRGVSK 321 (433)
Q Consensus 267 ~~~l~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~ 321 (433)
+..+..|+-..++++.|+||+||.... . ...+..+++++++.+..+|..++....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 445678999888899999999998874 2 247888999999999999999987654
No 130
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.72 E-value=0.89 Score=42.86 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=61.4
Q ss_pred CeEEEEeeCCCcC---CChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeE-EeCc--ccH-h
Q 013951 280 SSVVYVCLGSICN---LPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLL-IRGW--APQ-V 352 (433)
Q Consensus 280 ~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~--~pq-~ 352 (433)
++.|.+..|+... .+.+.+.++++.+.+.+.++++.-+....+.. .-+.+......++++ +.+- +.+ .
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~-----~~~~i~~~~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELA-----MVNEIAQGCQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHH-----HHHHHHhhCCCCcccccCCCCCHHHHH
Confidence 4577777777543 66788888888887777777665433221110 111221111122222 3332 344 5
Q ss_pred hhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 353 LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 353 ~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
.+++++++ +|+. -.|.++=|.+.|+|+|.+
T Consensus 256 ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 256 ALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 58889998 9998 788999999999999987
No 131
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.32 E-value=0.28 Score=40.73 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=53.7
Q ss_pred HCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCcc-HHHHHHHHHHhHHHHHHHH
Q 013951 33 QHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTD-FARFMKSLHMLQQPFENLF 111 (433)
Q Consensus 33 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l 111 (433)
++||+|++++........ .|++.+.+..+ ..... ...+... +..-...-..+...+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~-------~~~~~-~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPP-------RGPTP-GTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCC-------CCCCC-CCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 579999999965443321 26777766421 11111 1111111 2222222234555666665
Q ss_pred HhCCCCCcEEEECCCCcchHHHHHHc-CCCcEEEe
Q 013951 112 KEKTLKPCCIISDMCFPWTVDTAAKF-NVPRIIFH 145 (433)
Q Consensus 112 ~~~~~~pD~vI~D~~~~~~~~~A~~~-giP~v~~~ 145 (433)
++ +..||+||+..---.++-+-+.+ +.|.+.+.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 55 89999999997554667777777 79988863
No 132
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.03 E-value=3.2 Score=39.17 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=65.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+|||++-..+.|++.=...+.+.|+++ +.+|+|++.+...+.++. .+.++.+-. + +..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~--------~P~vd~vi~-~-------~~~---- 60 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR--------MPEVNEAIP-M-------PLG---- 60 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc--------CCccCEEEe-c-------ccc----
Confidence 379999999999999999999999996 999999998855443322 122332211 0 010
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 143 (433)
.. . ..+. ....+.+.++. .++|++|.=.-..-...++...|+|.-.
T Consensus 61 ~~---~--~~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 61 HG---A--LEIG-----ERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred cc---h--hhhH-----HHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 0 0000 01234455666 7999998644344556677777887644
No 133
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.37 E-value=4.5 Score=37.86 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=59.7
Q ss_pred CeEEEEeeCCCc----CCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeE-EeC--cccH-
Q 013951 280 SSVVYVCLGSIC----NLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLL-IRG--WAPQ- 351 (433)
Q Consensus 280 ~~~v~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~--~~pq- 351 (433)
++.|.+..|+.. ..+.+.+.++++.+.+.+.++++. |+..+.+ .-+.+.+. ...++. +.+ .+.+
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e~~------~~~~i~~~-~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKDHP------AGNEIEAL-LPGELRNLAGETSLDEA 245 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhhHH------HHHHHHHh-CCcccccCCCCCCHHHH
Confidence 558888887742 267788889988887767666554 4433221 11122111 122222 222 3344
Q ss_pred hhhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 352 VLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 352 ~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
..+++++++ +|+. -.|-++=|.+.|+|+|.+
T Consensus 246 ~ali~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 458888888 9987 567888899999999976
No 134
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.27 E-value=0.77 Score=38.22 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=62.5
Q ss_pred EEEcCCCCCChHHHHHHHHHH-HHC-CCEEEEEECCcchhh--hHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 11 LLLPYLAPGHLIPMFDIARLL-AQH-GAIVTIVTTPVNAAR--FKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 11 l~~~~~~~GH~~P~l~La~~L-~~r-GH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
+++. ++.||..=|+.|.+.+ .++ .++..+++....... +++..... .....+..++ ....
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~---------r~r~--- 65 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIP---------RARE--- 65 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccc---------eEEE---
Confidence 3444 8899999999999999 344 555666665543322 11111110 0001222221 1100
Q ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHc------CCCcEEEe
Q 013951 87 LLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKF------NVPRIIFH 145 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~------giP~v~~~ 145 (433)
...............+...+.-++++ +||+||+..-.. ....+|..+ |.+.|.+-
T Consensus 66 -v~q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 66 -VGQSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred -echhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 00001223333344444555555554 899999887444 567788888 99999873
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.90 E-value=0.21 Score=49.00 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=83.5
Q ss_pred CCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHH-HhCCCCeEEeCcccH-----h
Q 013951 279 PSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEE-RIKGRGLLIRGWAPQ-----V 352 (433)
Q Consensus 279 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~-~~~~~nv~~~~~~pq-----~ 352 (433)
++-+||.+|--...++++.++.-.+.|+..+.-++|.....-..+. + +-....+ -..++.|++.+-++. .
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~--r--f~ty~~~~Gl~p~riifs~va~k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQ--R--FRTYAEQLGLEPDRIIFSPVAAKEEHVRR 832 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchH--H--HHHHHHHhCCCccceeeccccchHHHHHh
Confidence 3459999998888899999999999999999999999876532210 0 0001111 124667776665543 2
Q ss_pred hhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccc-hhHHHhhhhccceEEeee
Q 013951 353 LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQF-CNEKLIVNVLRIGVSVGV 410 (433)
Q Consensus 353 ~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~e~~G~G~~l~~ 410 (433)
-.|.--.++.+.+. |+.|.++.++.|||||.+|...--- .-+..+ -..|+|-.+-+
T Consensus 833 ~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hliak 889 (966)
T KOG4626|consen 833 GQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIAK 889 (966)
T ss_pred hhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHhh
Confidence 34444444556776 5789999999999999999754322 233345 37888865544
No 136
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.69 E-value=4.2 Score=37.59 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=67.7
Q ss_pred eEEEEeeCCCc---CCChhhHHHHHHH----HHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHh-CCCCeEE---eCcc
Q 013951 281 SVVYVCLGSIC---NLPSSQLIELGLG----LEASNKPFVWVIRGVSKLEALEKWLVQENFEERI-KGRGLLI---RGWA 349 (433)
Q Consensus 281 ~~v~vs~Gs~~---~~~~~~~~~~~~a----l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~---~~~~ 349 (433)
+.+-|-.|.-. ..+.+....+++. ++..+..++++++.....+.. +-++... ..+.+.+ .+.=
T Consensus 147 p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~------~~L~~~~~~~~~~~~~~~~~~n 220 (311)
T PF06258_consen 147 PRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAE------AALRELLKDNPGVYIWDGTGEN 220 (311)
T ss_pred CeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHH------HHHHHhhcCCCceEEecCCCCC
Confidence 34545445322 2556644444333 334555666666555432211 1122222 1234422 2234
Q ss_pred cHhhhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccch----hHHHhhhhccceEEee
Q 013951 350 PQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFC----NEKLIVNVLRIGVSVG 409 (433)
Q Consensus 350 pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~----na~~v~e~~G~G~~l~ 409 (433)
|+...|+.++. .+||---.+.+.||+..|+|+.+++.-. +.. -...+ ++.|+-...+
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 78889988886 5667667888899999999999999876 322 23355 3667666554
No 137
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.61 E-value=0.36 Score=38.56 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=48.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
|++.+|++.+.++-+|-.-..-++..|.++|++|+++....-.+.+.+.+... +..++.++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-----~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-----DADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEEc
Confidence 46789999999999999999999999999999999999876655555554433 34555543
No 138
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.44 E-value=1.6 Score=33.86 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIA 55 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 55 (433)
||++.+.++-.|.....-++..|.++|++|..+......+.+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~ 47 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK 47 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999988876544444444443
No 139
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.25 E-value=6.3 Score=35.78 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhh
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAAR 49 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~ 49 (433)
|||++-....|++.-+..+.++|+++ +-+|++++.+.+.+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l 43 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPL 43 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHH
Confidence 58899999999999999999999997 489999999955543
No 140
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.73 E-value=12 Score=37.54 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCCeEEeCcccH-hhhhcCCCceeeec---ccc-hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeee
Q 013951 339 KGRGLLIRGWAPQ-VLILSHPAVGGFLT---HCG-WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVE 411 (433)
Q Consensus 339 ~~~nv~~~~~~pq-~~lL~~~~~~~~It---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~ 411 (433)
..++|.+.++..+ ..+|..+++ ||. .-| -+++.||+++|+|+|+... ..+...+ ++-..|..++..
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 3578999888654 447888888 875 345 4589999999999997754 4556677 577788887653
No 141
>PHA01633 putative glycosyl transferase group 1
Probab=92.73 E-value=0.72 Score=43.06 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=54.0
Q ss_pred CCCeEEe---CcccHh---hhhcCCCceeeecc---cch-hhHHHHHHcCCcEEeccc------cccc------chhHHH
Q 013951 340 GRGLLIR---GWAPQV---LILSHPAVGGFLTH---CGW-NSSLEGISAGVQMLTWPL------FADQ------FCNEKL 397 (433)
Q Consensus 340 ~~nv~~~---~~~pq~---~lL~~~~~~~~ItH---GG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~ 397 (433)
.+++.+. +++++. .+++.+++ ||.- -|+ .++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4678877 455554 56777887 7753 343 478899999999998633 2333 233333
Q ss_pred hhh-hccceEEeeeeccCCcccccchhhcccc
Q 013951 398 IVN-VLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 398 v~e-~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
.++ ..|.|..++ ..+.+.+.++|.++++.
T Consensus 278 ~~~~~~g~g~~~~--~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH--KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec--CCCHHHHHHHHHHHHhc
Confidence 211 235555544 57889999999988443
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.03 E-value=0.49 Score=39.12 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHH
Q 013951 17 APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARF 96 (433)
Q Consensus 17 ~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (433)
..|=-.-+..|+++|+++||+|+++++....... .. ...... ...... . ......+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~-----------~~-~~~~~~------~~~~~~-~-----~~~~~~~ 66 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIE-----------EE-LVKIFV------KIPYPI-R-----KRFLRSF 66 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-S-----------ST-EEEE---------TT-SS-T-----SS--HHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccch-----------hh-ccceee------eeeccc-c-----cccchhH
Confidence 4455667899999999999999999877333210 01 011100 000000 0 0001111
Q ss_pred HHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc-chHHHHHHcCCCcEEEecchH
Q 013951 97 MKSLHMLQQPFENLFKEKTLKPCCIISDMCFP-WTVDTAAKFNVPRIIFHGFSC 149 (433)
Q Consensus 97 ~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~~~~~ 149 (433)
.....+.+.+++ .+||+|-+..... +....+-. ++|.+.......
T Consensus 67 -----~~~~~~~~~i~~--~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 -----FFMRRLRRLIKK--EKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp -----HHHHHHHHHHHH--HT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred -----HHHHHHHHHHHH--cCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 123467777887 7999995554333 33333434 999988655443
No 143
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=91.39 E-value=0.99 Score=43.72 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=55.1
Q ss_pred hhhcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEE-eeeeccCCcccccchhhccccc
Q 013951 353 LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVS-VGVEVDLPITTSNYLCKISCNS 429 (433)
Q Consensus 353 ~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~-l~~~~~~~~~l~~ai~~il~~~ 429 (433)
.+++++++ +|..==+ ++.-|+..|||.+.+++ | +....-+ +..|..-. ++.++++.+.|.+.+.++++|.
T Consensus 323 ~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 323 KILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred HHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 68888887 8864322 46668889999999997 3 5555566 58898866 7888899999999999999884
No 144
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=90.36 E-value=1.1 Score=44.56 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCeEEeCcccH---hhhhcCCCceeeeccc---chhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccC
Q 013951 341 RGLLIRGWAPQ---VLILSHPAVGGFLTHC---GWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDL 414 (433)
Q Consensus 341 ~nv~~~~~~pq---~~lL~~~~~~~~ItHG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~ 414 (433)
..|.+.++... ..++..+.+ +|.=+ |.++..||+.+|+|+| .......| +...=|..+ -+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li----~d 474 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII----DD 474 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe----CC
Confidence 56778887773 336656666 88766 7789999999999999 44455566 576777777 26
Q ss_pred Ccccccchhhccccc
Q 013951 415 PITTSNYLCKISCNS 429 (433)
Q Consensus 415 ~~~l~~ai~~il~~~ 429 (433)
.++|.++|..+|.+.
T Consensus 475 ~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 475 ISELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHHhCH
Confidence 678999999998876
No 145
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=89.75 E-value=0.4 Score=44.96 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCCeEEeCcccHhhhhcC--CCceeeecc-------cch------hhHHHHHHcCCcEEecccccccchhHHHhhhhccc
Q 013951 340 GRGLLIRGWAPQVLILSH--PAVGGFLTH-------CGW------NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRI 404 (433)
Q Consensus 340 ~~nv~~~~~~pq~~lL~~--~~~~~~ItH-------GG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~ 404 (433)
.+||.+.+|+|+.++..+ .+..++... |.+ +-+.+.+++|+|+|+. ++...+..+ ++.++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 468999999998876432 133222221 111 1266789999999985 467788889 79999
Q ss_pred eEEeeeeccCCcccccchhhccc
Q 013951 405 GVSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 405 G~~l~~~~~~~~~l~~ai~~il~ 427 (433)
|+.++ +.+.+.+++.++.+
T Consensus 281 G~~v~----~~~el~~~l~~~~~ 299 (333)
T PRK09814 281 GFVVD----SLEELPEIIDNITE 299 (333)
T ss_pred eEEeC----CHHHHHHHHHhcCH
Confidence 99987 44567777777543
No 146
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=89.65 E-value=4.4 Score=37.49 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=62.4
Q ss_pred CCCCeE-EeCccc---HhhhhcCCCceeeecc--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 339 KGRGLL-IRGWAP---QVLILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 339 ~~~nv~-~~~~~p---q~~lL~~~~~~~~ItH--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
..+|+. +.+++| +..+|+.|++..|.+. -|+|+++-.++.|+|+++- .+-+.|-... +.|+=+.-..++
T Consensus 243 ~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~--~~~ipVlf~~d~ 317 (360)
T PF07429_consen 243 GAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK--EQGIPVLFYGDE 317 (360)
T ss_pred CccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH--hCCCeEEecccc
Confidence 445775 466777 5669999999877775 5899999999999999975 4445554444 557777777788
Q ss_pred cCCcccccchhhcc
Q 013951 413 DLPITTSNYLCKIS 426 (433)
Q Consensus 413 ~~~~~l~~ai~~il 426 (433)
++...++++=+++.
T Consensus 318 L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 318 LDEALVREAQRQLA 331 (360)
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888866654
No 147
>PRK14098 glycogen synthase; Provisional
Probab=88.34 E-value=2.2 Score=42.44 Aligned_cols=82 Identities=10% Similarity=-0.067 Sum_probs=53.5
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeeccc---ch-hhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLTHC---GW-NSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItHG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
++++.+....+.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+-........ +..+.|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeCC--
Confidence 4688888888764 57888888 76432 22 26789999999888876533211111122 23567777654
Q ss_pred cCCcccccchhhcc
Q 013951 413 DLPITTSNYLCKIS 426 (433)
Q Consensus 413 ~~~~~l~~ai~~il 426 (433)
.+.+.+.++|.+++
T Consensus 436 ~d~~~la~ai~~~l 449 (489)
T PRK14098 436 YTPEALVAKLGEAL 449 (489)
T ss_pred CCHHHHHHHHHHHH
Confidence 46788888888765
No 148
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.01 E-value=7.1 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
.+++|||+.- -..=|.--+.+|+++|.+.| +|+++.+..++.
T Consensus 3 ~~~M~ILltN-DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 3 DKKPHILVCN-DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 4457887665 22223345889999999888 799999886654
No 149
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=87.08 E-value=8.6 Score=35.13 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=59.9
Q ss_pred CCCCeE-EeCccc---HhhhhcCCCceeeecc--cchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 339 KGRGLL-IRGWAP---QVLILSHPAVGGFLTH--CGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 339 ~~~nv~-~~~~~p---q~~lL~~~~~~~~ItH--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
..+|+. +.+++| +..+|++|++..|+|+ -|.|+++-.++.|||+++- .+=+.|.... +.|+-+.-+.+.
T Consensus 204 ~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~d~ 278 (322)
T PRK02797 204 GAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTGDD 278 (322)
T ss_pred CcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecCCc
Confidence 335665 455665 6779999999888886 5899999999999999986 3455555533 667777667778
Q ss_pred cCCcccccchhh
Q 013951 413 DLPITTSNYLCK 424 (433)
Q Consensus 413 ~~~~~l~~ai~~ 424 (433)
++...++++=++
T Consensus 279 L~~~~v~e~~rq 290 (322)
T PRK02797 279 LDEDIVREAQRQ 290 (322)
T ss_pred ccHHHHHHHHHH
Confidence 887777776333
No 150
>PRK14099 glycogen synthase; Provisional
Probab=86.92 E-value=9.8 Score=37.79 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCC------CCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 5 ASQVHFLLLPYL------APGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 5 ~~~~~il~~~~~------~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
|+++||++++.- +.|=..-+-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 467899998854 33444456789999999999999999864
No 151
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.17 E-value=4.1 Score=31.47 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHH
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIA 55 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 55 (433)
.|+++.+.+..-|-.-+..||..|.++||+|.++-.....+.+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~ 48 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR 48 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh
Confidence 378999999999999999999999999999999976654444444443
No 152
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.08 E-value=1.3 Score=34.94 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
+||++...|+.+=.. ...+.++|.++|++|.++.++.-..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~ 40 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAER 40 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHH
Confidence 588888888877777 9999999999999999999994443
No 153
>PRK12342 hypothetical protein; Provisional
Probab=84.92 E-value=15 Score=32.86 Aligned_cols=40 Identities=5% Similarity=-0.064 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCc------chHHHHHHcCCCcEEEec
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFP------WTVDTAAKFNVPRIIFHG 146 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~~~ 146 (433)
..+...++. .+||+|++-..+. -+..+|+.+|+|++.+..
T Consensus 99 ~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 99 KALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 355566676 5799999866554 379999999999998643
No 154
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.82 E-value=3.3 Score=36.57 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHH
Q 013951 19 GHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMK 98 (433)
Q Consensus 19 GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
=|.--..+|+++|. .+++|+++.+..++...-..+.- ..+++...+.. ....... .+.+
T Consensus 11 i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl----~~Plr~~~~~~---------~~~av~G-TPaD------ 69 (252)
T COG0496 11 IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTL----HEPLRVRQVDN---------GAYAVNG-TPAD------ 69 (252)
T ss_pred cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccc----ccCceeeEecc---------ceEEecC-ChHH------
Confidence 35555888999999 89999999999766533221110 01233322211 0001111 1111
Q ss_pred HHHHhHHHHHHHHHhCCCCCcEEEEC----------CCCc---chHHHHHHcCCCcEEEecc
Q 013951 99 SLHMLQQPFENLFKEKTLKPCCIISD----------MCFP---WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 99 ~~~~~~~~l~~~l~~~~~~pD~vI~D----------~~~~---~~~~~A~~~giP~v~~~~~ 147 (433)
-..-.+..++++ .+||+||+- .++. +++.=|..+|||.|.+|..
T Consensus 70 ---CV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 70 ---CVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ---HHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 112245566666 679999963 3333 4455566789999998655
No 155
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.76 E-value=7.3 Score=35.20 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred CCeEEeCcccHhhhhcCCCceeeecccchhhHHHHHHcCCcEEeccc
Q 013951 341 RGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPL 387 (433)
Q Consensus 341 ~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~ 387 (433)
..+.+.+-.+-.++|.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34455667888899999999 8888754 88899999999999873
No 156
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=84.49 E-value=4.2 Score=34.97 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=41.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHH
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIA 55 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 55 (433)
++.||++.+.++-.|-....-++..|..+|++|+.+....-.+.+.+.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~ 130 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK 130 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999998886655545555443
No 157
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.78 E-value=31 Score=30.71 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred EEEEeeCCCcC--CChhhHHH----HHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEE-----eCccc
Q 013951 282 VVYVCLGSICN--LPSSQLIE----LGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLI-----RGWAP 350 (433)
Q Consensus 282 ~v~vs~Gs~~~--~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-----~~~~p 350 (433)
|.++-.|+... .+++.... +.+.+++.+..++.+.+....... -..++......-+.+ .++-|
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~------~s~l~~~l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTV------KSILKNNLNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHH------HHHHHhccccCceeEeCCCCCCCCc
Confidence 44444455444 33333333 455677788999999887743221 011111112222222 25669
Q ss_pred HhhhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 351 QVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 351 q~~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
+.+.|+.++. .++|--..+.+.||.+.|+|+.++
T Consensus 238 Y~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 238 YIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred hHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 9999998886 344555678888999999999775
No 158
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=83.76 E-value=5.1 Score=34.30 Aligned_cols=60 Identities=10% Similarity=-0.069 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
++.+|++.+.++-.|-....-++..|..+|++|+++....-.+.+.+.+... +.+++.++
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~-----~pd~v~lS 142 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE-----KPLMLTGS 142 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-----CCCEEEEc
Confidence 4579999999999999999999999999999999998876666666655443 44555543
No 159
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=82.79 E-value=17 Score=35.56 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhC---CCCeEEEEecCCCccCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKS---GLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
..+|++++.-+ .-.+.+++.|.+-|-+|..+.+......+.+........ +.+.....
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~-------------- 362 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP-------------- 362 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE--------------
Confidence 35677776532 337778888888899997776654333333322211000 00000000
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
. .-..++.+.++. .+||++|.... ...+|+++|||++.+.
T Consensus 363 -~-----------------~d~~e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 363 -G-----------------KDLWHLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred -C-----------------CCHHHHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 0 012366777777 79999999864 6889999999998763
No 160
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.60 E-value=2.2 Score=33.01 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCC---ChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLPYLAPG---HLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~~~~~G---H~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+||+|+.-|-.+ .-.-.++|+.+.++|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 467777766444 33458899999999999999998763
No 161
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=81.87 E-value=10 Score=33.80 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCc
Q 013951 22 IPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 22 ~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
.-+-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346789999999999999999875
No 162
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=81.16 E-value=22 Score=29.94 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCE--EEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAI--VTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+||+|+.+++. ..+..+.++|.+++|+ |..+.+............. . ++....+.. ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~---~--~~~~~~~~~--------~~---- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK---N--GIPAQVADE--------KN---- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH---T--THHEEEHHG--------GG----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc---C--CCCEEeccc--------cC----
Confidence 58888865554 5567778899999998 5444444332221111111 1 222222211 00
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC-cchHHHHHHcCCCcEEEecc
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF-PWTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~-~~~~~~A~~~giP~v~~~~~ 147 (433)
... .....+++.+.+++ .+||++|+-.+. .-...+-+..+..++-++++
T Consensus 61 --~~~---------~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 --FQP---------RSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp --SSS---------HHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred --CCc---------hHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 01234567788888 999999887654 34455667777777776554
No 163
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.07 E-value=49 Score=31.01 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+||+++-....|++.=.+.+-+.|+++ +.+++|++.+...+.++.. +.++-+-. .....
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~----------~~~~~- 62 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVII----------IDKKK- 62 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcc----------ccccc-
Confidence 689999999999999999999999998 6999999999555433221 11222111 00000
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 143 (433)
.. ..+ .-...+.+.++. .++|++|.=.-..-...++...++|.-.
T Consensus 63 ~~---~~~--------~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 63 KG---LGL--------KERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred cc---cch--------HHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 00 000 112355566676 7899999776666667777788888654
No 164
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=80.77 E-value=22 Score=30.53 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+||+++..+..+-+. +|.+.+.+. +++|.++.+........+...+. ++.+..++. ....+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~-----gIp~~~~~~--------~~~~~- 64 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA-----GIPTFVLDH--------KDFPS- 64 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc-----CCCEEEECc--------cccCc-
Confidence 589999977654444 566667665 47788765443222233333322 566655431 10000
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc-chHHHHHHcCCCcEEEe
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP-WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~ 145 (433)
.....+.+.+.+++ .+||++|+-.+.. ....+-+...-.++-++
T Consensus 65 --------------~~~~~~~~~~~l~~--~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiH 109 (200)
T PRK05647 65 --------------REAFDAALVEALDA--YQPDLVVLAGFMRILGPTFVSAYEGRIINIH 109 (200)
T ss_pred --------------hhHhHHHHHHHHHH--hCcCEEEhHHhhhhCCHHHHhhccCCEEEEe
Confidence 00123456677888 8999999855432 33334444444445543
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=80.70 E-value=8.2 Score=34.19 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=54.1
Q ss_pred CeEEEEeeCCCcC---CChhhHHHHHHHHHhCCCCEEEEEeCCcc-hhhhhhhhchhhHHHHhCCCCeEEeCc--ccH-h
Q 013951 280 SSVVYVCLGSICN---LPSSQLIELGLGLEASNKPFVWVIRGVSK-LEALEKWLVQENFEERIKGRGLLIRGW--APQ-V 352 (433)
Q Consensus 280 ~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~~~p~~~~~~~~~~nv~~~~~--~pq-~ 352 (433)
++.|.+..|+... .+.+.+.++++.+.+.++++++..+..+. .+.... +.++ .....+.+.+- +.+ .
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQ--IAAG----LQNPVINLAGKTSLRELA 178 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHH--HHTT----HTTTTEEETTTS-HHHHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHH--HHHh----cccceEeecCCCCHHHHH
Confidence 4577788887553 67888999999998888665544433321 111111 1111 11124444333 333 4
Q ss_pred hhhcCCCceeeecccchhhHHHHHHcCCcEEec
Q 013951 353 LILSHPAVGGFLTHCGWNSSLEGISAGVQMLTW 385 (433)
Q Consensus 353 ~lL~~~~~~~~ItHGG~gs~~eal~~GvP~v~~ 385 (433)
.++.++++ +|+. -.|.++=|...|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 68889998 8887 467888899999999998
No 166
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=80.59 E-value=17 Score=35.42 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
.++.+.+++ .+||++|.+.. ...+|+++|+|++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 466778888 89999999974 478999999999875
No 167
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=80.20 E-value=22 Score=34.49 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 109 NLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 109 ~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
+.+++ .+||++|... .+..+|+++|||.+.+
T Consensus 344 ~~~~~--~~pDl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 344 AAVEE--YRPDLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred HHHhh--cCCCEEEeCC---hhhHHHHHhCCCEEEe
Confidence 44556 7999999883 4688999999999885
No 168
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=80.09 E-value=28 Score=30.59 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=23.7
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecc
Q 013951 116 LKPCCII-SDMCFP-WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 116 ~~pD~vI-~D~~~~-~~~~~A~~~giP~v~~~~~ 147 (433)
.-||+++ .|+..- -+..=|.++|||+|.+.-+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 4599876 666443 6777899999999997544
No 169
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=80.09 E-value=7.9 Score=36.04 Aligned_cols=134 Identities=10% Similarity=-0.144 Sum_probs=74.9
Q ss_pred eEEE-EeeCCCc--CCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeC--cccH-hhh
Q 013951 281 SVVY-VCLGSIC--NLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRG--WAPQ-VLI 354 (433)
Q Consensus 281 ~~v~-vs~Gs~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~--~~pq-~~l 354 (433)
+.|. +-.||.. ..+.+.+.++++.+.+.+.++++..|+..+.+ .-+.+.+ ..+++.+.+ .+.+ ..+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~------~~~~i~~--~~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQ------RAKRLAE--GFPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH------HHHHHHc--cCCcceecCCCCHHHHHHH
Confidence 3444 4444443 26788889999988777777665545432211 1111211 122333333 3444 458
Q ss_pred hcCCCceeeecccchhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEE---eeeeccCCcccccchhhccc
Q 013951 355 LSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVS---VGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 355 L~~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~---l~~~~~~~~~l~~ai~~il~ 427 (433)
++++++ +|+.- .|.++=|...|+|+|.+=--.|...++-.- +. ..-+. -...+++.+++.+++.++|+
T Consensus 251 i~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~-~~-~~~~~~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYG-KN-QHACRSPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCC-CC-ceeecCCCcccccCCHHHHHHHHHHHhh
Confidence 889998 99884 688999999999999984333322221111 00 00000 12445677777777777664
No 170
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.07 E-value=29 Score=27.79 Aligned_cols=42 Identities=24% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
.+.||++.+.+.-||-.-..-+++.|+..|.+|.....-...
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp 52 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP 52 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH
Confidence 578999999999999999999999999999999988755433
No 171
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.91 E-value=15 Score=33.53 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCeEEeCccc---HhhhhcCCCceeeecc---cchhh-HHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeec
Q 013951 340 GRGLLIRGWAP---QVLILSHPAVGGFLTH---CGWNS-SLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 340 ~~nv~~~~~~p---q~~lL~~~~~~~~ItH---GG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
.+++...++++ ...++..+++ ++.- .|.|. +.||+++|+|+|... .......+ ...+.|..... .
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~~~~~-~ 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGLLVPP-G 327 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceEecCC-C
Confidence 47788888888 3346666766 5555 35544 599999999996654 44444455 34434663332 2
Q ss_pred cCCcccccchhhccccc
Q 013951 413 DLPITTSNYLCKISCNS 429 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~ 429 (433)
+.+.+.+++..++++.
T Consensus 328 -~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 328 -DVEELADALEQLLEDP 343 (381)
T ss_pred -CHHHHHHHHHHHhcCH
Confidence 6778888888888775
No 172
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=79.37 E-value=51 Score=32.18 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
.++.+++++ .+||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 467778888 89999999975 578999999999875
No 173
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.04 E-value=7 Score=34.85 Aligned_cols=38 Identities=11% Similarity=0.273 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCcEEE--ECCCCc----chHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCII--SDMCFP----WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI--~D~~~~----~~~~~A~~~giP~v~~ 144 (433)
+.+.+++++ .++|+|| +++|.. -+..+|+++|||++.+
T Consensus 56 ~~l~~~l~~--~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 56 EGLAEFLRE--NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHh--CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 477888888 8999998 444332 5578899999999996
No 174
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=78.87 E-value=10 Score=33.89 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCcEEEECCCCc------chHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFP------WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~ 144 (433)
.+.+++++ .++|+||--.+.+ -+..+|+++|||++.+
T Consensus 56 ~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 57788888 8999887444433 3577899999999996
No 175
>PRK05973 replicative DNA helicase; Provisional
Probab=78.78 E-value=21 Score=31.52 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTV 53 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (433)
=+++.--|+.|-..-++.++.+.+++|+.|.+++.+...+.+..-
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 366677789999999999999998899999999988776554443
No 176
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=78.72 E-value=9 Score=31.56 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=59.6
Q ss_pred EEEcCCCCCChHH----HHHHHHHHHHC-CCEEEEEECCc---chhhhHHHHHHhhhCCCCe-EEEEecCCCccCCCCCC
Q 013951 11 LLLPYLAPGHLIP----MFDIARLLAQH-GAIVTIVTTPV---NAARFKTVIARAIKSGLQI-RLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 11 l~~~~~~~GH~~P----~l~La~~L~~r-GH~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 81 (433)
+++.--..|.++| ++..|++|++. |.+|+.++... ..+.+++... .+|. +.+.++.+ .
T Consensus 3 lv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~-----~~G~d~v~~~~~~-------~- 69 (164)
T PF01012_consen 3 LVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALA-----KYGADKVYHIDDP-------A- 69 (164)
T ss_dssp EEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHH-----STTESEEEEEE-G-------G-
T ss_pred EEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhh-----hcCCcEEEEecCc-------c-
Confidence 3333333555555 78889999875 88988887552 1222222222 1244 34444321 0
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcCCCcEEE
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~ 144 (433)
... . ........+.+++++ .+||+|+.-.-.. .+..+|.++|.|++.-
T Consensus 70 ~~~------~-------~~~~~a~~l~~~~~~--~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 70 LAE------Y-------DPEAYADALAELIKE--EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp GTT------C--------HHHHHHHHHHHHHH--HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred ccc------c-------CHHHHHHHHHHHHHh--cCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 000 0 011245577778888 8999999876444 6688999999999884
No 177
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=78.37 E-value=9.6 Score=29.66 Aligned_cols=46 Identities=20% Similarity=0.045 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
|+++.+.++-.|-.-..-++.-|..+|++|.......-.+.+.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a 46 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA 46 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999998765444444433
No 178
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=78.27 E-value=41 Score=28.55 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCC--EEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGA--IVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+||+++.++..+-.. ++.+.+.+.++ +|.++.+........+...+. ++.+..++. ....+
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~-----gip~~~~~~--------~~~~~- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQA-----GIPTFVLSL--------KDFPS- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHHc-----CCCEEEECc--------cccCc-
Confidence 478888876655544 66667777655 677654443222222222222 555554321 11100
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc-chHHHHHHcCCCcEEEe
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP-WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~ 145 (433)
.....+.+.+.+++ .++|++|+-.+.. ....+-..+...++-++
T Consensus 64 --------------~~~~~~~~~~~l~~--~~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 64 --------------REAFDQAIIEELRA--HEVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred --------------hhhhhHHHHHHHHh--cCCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 00123467778888 8999999765533 44444444544555543
No 179
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=78.21 E-value=25 Score=31.36 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 22 IPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 22 ~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
--+.+|+++|++ +|+|+++.+..++.
T Consensus 14 pGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 14 EGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred hhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 348899999975 68999999886654
No 180
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=77.90 E-value=37 Score=30.54 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 20 HLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 20 H~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
|..-+.+|+++|.+.| +|+++.+..++.
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 4456889999999887 799999886654
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=77.84 E-value=6.5 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
++-++++..+...|..-.-.+|+.|.+.|..|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 477899999999999999999999999999988653
No 182
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.65 E-value=1.7 Score=36.75 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCChHH------------HHHHHHHHHHCCCEEEEEECCc
Q 013951 7 QVHFLLLPYLAPGHLIP------------MFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P------------~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
.+||++...|++=.+.| -.+||+++..|||+|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45777777766555544 3789999999999999999883
No 183
>PHA01630 putative group 1 glycosyl transferase
Probab=77.34 E-value=16 Score=34.16 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=45.4
Q ss_pred CcccHhh---hhcCCCceeee--c-ccc-hhhHHHHHHcCCcEEeccccc--ccc---hhHHHhhhh-----------cc
Q 013951 347 GWAPQVL---ILSHPAVGGFL--T-HCG-WNSSLEGISAGVQMLTWPLFA--DQF---CNEKLIVNV-----------LR 403 (433)
Q Consensus 347 ~~~pq~~---lL~~~~~~~~I--t-HGG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~~v~e~-----------~G 403 (433)
.++|+.+ +++.+++ +| + ..| -.++.||+++|+|+|+.-..+ |.. .|+..+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466544 5778888 65 2 333 447899999999999976432 221 222222 11 23
Q ss_pred ceEEeeeeccCCcccccchhhcccc
Q 013951 404 IGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 404 ~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
+|..++. +.+.+.+++.++|.|
T Consensus 273 ~G~~v~~---~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 273 VGYFLDP---DIEDAYQKLLEALAN 294 (331)
T ss_pred cccccCC---CHHHHHHHHHHHHhC
Confidence 5555543 456677777777776
No 184
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.95 E-value=10 Score=32.86 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHh
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARA 57 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~ 57 (433)
++.||++.+.++-.|-....-++-.|..+|++|+.+....-.+.+.+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~ 138 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH 138 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc
Confidence 4579999999999999999999999999999999999776555555554433
No 185
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=75.67 E-value=2.7 Score=31.04 Aligned_cols=84 Identities=23% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHHHHHHh
Q 013951 24 MFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMKSLHML 103 (433)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
++.+|+.|.+.|+++ ++++.....+++. ++.+..+.... +.++ ... .
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~---~~~~---~~~----g------------ 48 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKI---GEGE---SPD----G------------ 48 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEH---STG----GGT----H------------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeec---ccCc---cCC----c------------
Confidence 578999999999665 5555444444432 56644432100 0000 000 0
Q ss_pred HHHHHHHHHhCCCCCcEEEECCCCcc---------hHHHHHHcCCCcE
Q 013951 104 QQPFENLFKEKTLKPCCIISDMCFPW---------TVDTAAKFNVPRI 142 (433)
Q Consensus 104 ~~~l~~~l~~~~~~pD~vI~D~~~~~---------~~~~A~~~giP~v 142 (433)
...+.+.+++ .+.|+||.-..... -..+|...+||++
T Consensus 49 ~~~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 49 RVQIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp CHHHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred hhHHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 0167888888 99999998765431 1456778888875
No 186
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=75.18 E-value=31 Score=33.75 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=56.7
Q ss_pred CCeEE-eCccc-H-hhhhcCCCceeeecccc--hhhHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCC
Q 013951 341 RGLLI-RGWAP-Q-VLILSHPAVGGFLTHCG--WNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLP 415 (433)
Q Consensus 341 ~nv~~-~~~~p-q-~~lL~~~~~~~~ItHGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~ 415 (433)
+|+++ .++.+ + .+++..|++.+-|+||+ ..++.||+.+|+|++..=.... +...+ .. |-.... -+.
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~~--~~~ 398 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFEH--NEV 398 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---CceecC--CCH
Confidence 56654 45566 3 56999999999999977 5688999999999998743322 22333 23 444443 246
Q ss_pred cccccchhhcccccc
Q 013951 416 ITTSNYLCKISCNSQ 430 (433)
Q Consensus 416 ~~l~~ai~~il~~~~ 430 (433)
+++.++|.++|++++
T Consensus 399 ~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 399 DQLISKLKDLLNDPN 413 (438)
T ss_pred HHHHHHHHHHhcCHH
Confidence 788899999988873
No 187
>PHA02542 41 41 helicase; Provisional
Probab=75.07 E-value=46 Score=32.88 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAAR 49 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (433)
+++..-|+.|-..-.+.+|...++.|+.|.|++.+...+.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~q 232 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEV 232 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHH
Confidence 6667778999999999999999888999999998865543
No 188
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=74.59 E-value=32 Score=26.06 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHH
Q 013951 19 GHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMK 98 (433)
Q Consensus 19 GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
++-.-++.+++.|.+.|+++. +++...+.+++. ++.+..+.. ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~------~~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNK------VSE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEee------cCC------------------
Confidence 455678899999999999983 455444444332 565544421 110
Q ss_pred HHHHhHHHHHHHHHhCCCCCcEEEECCC-------CcchHHHHHHcCCCcEE
Q 013951 99 SLHMLQQPFENLFKEKTLKPCCIISDMC-------FPWTVDTAAKFNVPRII 143 (433)
Q Consensus 99 ~~~~~~~~l~~~l~~~~~~pD~vI~D~~-------~~~~~~~A~~~giP~v~ 143 (433)
-.+.+.+.+++ .++|+||.-.- .+.....|-.+|||++.
T Consensus 55 ----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 ----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 01357778888 89999998432 12456678899999885
No 189
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=74.53 E-value=58 Score=29.19 Aligned_cols=41 Identities=10% Similarity=-0.081 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCc------chHHHHHHcCCCcEEEecc
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFP------WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~~~~ 147 (433)
..+.+.+++ ..||+||+-..+. -+..+|+.+|+|++.+...
T Consensus 102 ~~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 455666777 6799999765443 5688999999999986443
No 190
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.07 E-value=13 Score=33.04 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
++|+++..-+-| ..||+.|.++|+.|+..+...... . ...+..... ..
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~---------~~~~~~v~~-----------------G~ 50 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P---------ADLPGPVRV-----------------GG 50 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c---------ccCCceEEE-----------------CC
Confidence 467777644444 478999999999888776553221 0 001111111 00
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEE--ECCCCc----chHHHHHHcCCCcEEE
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCII--SDMCFP----WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI--~D~~~~----~~~~~A~~~giP~v~~ 144 (433)
+. -.+.+.+++++ .++++|| +++|.. -+..+|+++|||++.+
T Consensus 51 l~-------------~~~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 51 FG-------------GAEGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CC-------------CHHHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 00 13577888888 8999988 444432 4578899999999997
No 191
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=73.82 E-value=37 Score=26.01 Aligned_cols=87 Identities=20% Similarity=0.089 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHHH
Q 013951 20 HLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMKS 99 (433)
Q Consensus 20 H~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (433)
+-.-+..+|+.|.+.|.+|. +++...+.+++. ++.+..+. .... .....
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~------~~~~-~~~~~------------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVA------WPSE-EPQND------------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEee------eccC-CCCCC-------------
Confidence 45568899999999999883 455444433332 44444331 0100 00000
Q ss_pred HHHhHHHHHHHHHhCCCCCcEEEECCC---------CcchHHHHHHcCCCcEE
Q 013951 100 LHMLQQPFENLFKEKTLKPCCIISDMC---------FPWTVDTAAKFNVPRII 143 (433)
Q Consensus 100 ~~~~~~~l~~~l~~~~~~pD~vI~D~~---------~~~~~~~A~~~giP~v~ 143 (433)
.+.+.+++++ .++|+||.-.- .+.....|-++|||++.
T Consensus 60 ----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 ----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1467788888 89999998432 13456678899999964
No 192
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=73.77 E-value=4.9 Score=34.19 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
+.+||++.-.|+.|=+.-...++++|.++||+|+++.++...
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 345788877676555544699999999999999999988543
No 193
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=73.52 E-value=12 Score=31.73 Aligned_cols=100 Identities=8% Similarity=0.125 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcch-hhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNA-ARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCEN 84 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 84 (433)
..|-|.+ .+-|-+.-+..|+++|.++ |+.|.+-++.... +..++.. .. .+....+|++
T Consensus 22 ~~iWiHa-~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~----~~--~v~~~~~P~D------------ 82 (186)
T PF04413_consen 22 PLIWIHA-ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL----PD--RVDVQYLPLD------------ 82 (186)
T ss_dssp T-EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-----GG--G-SEEE---S------------
T ss_pred CcEEEEE-CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC----CC--CeEEEEeCcc------------
Confidence 4455554 6789999999999999987 9998888764332 2221111 11 2222223320
Q ss_pred CCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHcCCCcEEEec
Q 013951 85 CDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKFNVPRIIFHG 146 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~ 146 (433)
.-..++++++. ++||++|.--... .-...|++.|||++.++.
T Consensus 83 ------------------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------------------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------------------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------------------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12366778888 8999988544444 446667788999998743
No 194
>PRK06321 replicative DNA helicase; Provisional
Probab=73.33 E-value=48 Score=32.76 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=33.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAAR 49 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~ 49 (433)
+++..-|+.|-..-++.+|...+. .|+.|.|++.+.....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 566777899999999999999874 5999999998865543
No 195
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=72.46 E-value=36 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEECC
Q 013951 101 HMLQQPFENLFKEKTLKPCCIISDM 125 (433)
Q Consensus 101 ~~~~~~l~~~l~~~~~~pD~vI~D~ 125 (433)
..+...+.+++++ .+||+|++-.
T Consensus 86 ~~~~~~l~~~i~~--~~p~~V~t~~ 108 (128)
T PF02585_consen 86 EELVRDLEDLIRE--FRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHH--H-ESEEEEE-
T ss_pred HHHHHHHHHHHHH--cCCCEEEECC
Confidence 3466788899998 8999998754
No 196
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=72.43 E-value=37 Score=32.96 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
.+.+.+++ .+||++|...+. ..+|+++|||++.+
T Consensus 349 e~~~~~~~--~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEM--LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHh--cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 34455666 799999998653 46999999999875
No 197
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.22 E-value=29 Score=25.13 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCCcEEEECCCC---------cchHHHHHHcCCCcE
Q 013951 106 PFENLFKEKTLKPCCIISDMCF---------PWTVDTAAKFNVPRI 142 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~---------~~~~~~A~~~giP~v 142 (433)
.+.+.+++ .++|+||.-... .....+|...+||++
T Consensus 46 ~i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 46777888 899999985431 134556888899975
No 198
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=72.19 E-value=20 Score=28.50 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
.+|++-+..+.+|-.--.-++..|.++|++|..+......+.+-+..
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa 48 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA 48 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999999999999999998776555554444
No 199
>PRK05595 replicative DNA helicase; Provisional
Probab=72.18 E-value=36 Score=33.42 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=33.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLA-QHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|-..-++.+|..++ +.|+.|.|++.+...+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 55677789999999999998876 569999999998655443
No 200
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=71.37 E-value=45 Score=29.73 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCC-----CccCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFP-----WQEAGIPEGC 82 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~ 82 (433)
+|||+.-=-+. |.--..+|+++|++ +|+|+++.+. .-+............+++..+... +.-.+.|.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~----~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPa-- 72 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPD----KERSATGHAITIRVPLWAKKVFISERFVAYATTGTPA-- 72 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccC----CCCccccccccCCCCceEEEeecCCCccEEEECCcHH--
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEE----------CCCCc---chHHHHHHcCCCcEEEe
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIIS----------DMCFP---WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~----------D~~~~---~~~~~A~~~giP~v~~~ 145 (433)
.+...-...+-. .+||+||+ |.++. +++.-|..+|||.+.+|
T Consensus 73 -------------------DcV~lal~~~~~--~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S 127 (253)
T PRK13935 73 -------------------DCVKLGYDVIMD--KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAIS 127 (253)
T ss_pred -------------------HHHHHHHHhhcc--CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEE
No 201
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=71.28 E-value=62 Score=31.83 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=29.0
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 8 VHFLLLPY-LAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~-~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
++|++... ..-|-..=...|++.|+++|++|..+-+.
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 35666633 44578888999999999999999998764
No 202
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.24 E-value=91 Score=29.18 Aligned_cols=127 Identities=14% Similarity=-0.026 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
+++|++++-.|.-||--.|.-=|..|++.|.+|.++.-...... .+.. .++.++++.++.. + . .
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~-----~hprI~ih~m~~l------~-~---~ 74 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL-----NHPRIRIHGMPNL------P-F---L 74 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh-----cCCceEEEeCCCC------c-c---c
Confidence 46789999999999999999999999999999999986544321 1222 3567999887632 2 1 1
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCC-CcchHHHH----HHcCCCcEEEecchHHH
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMC-FPWTVDTA----AKFNVPRIIFHGFSCFC 151 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-~~~~~~~A----~~~giP~v~~~~~~~~~ 151 (433)
. ..+..+......+.++...+..++.- .++|.++.-.= +.....+| .-.|..+++=|....|.
T Consensus 75 ~-~~p~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 75 Q-GGPRVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred C-CCchhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1 11111344555555555556666655 79999886642 22333333 34478888766666554
No 203
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=71.09 E-value=50 Score=32.74 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 143 (433)
++.+.+++ .+||++|.. .....+|+++|||++.
T Consensus 384 e~~~~i~~--~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKE--AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhh--cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 56667777 899999998 3567899999999984
No 204
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=70.42 E-value=84 Score=30.96 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
.++.+.+++ .+||++|... ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~--~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLE--YKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhh--cCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 467778888 8999999873 4577899999999875
No 205
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=70.28 E-value=4.6 Score=36.48 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=43.8
Q ss_pred ccchhhHHH--HHHcCCcEEecccccccchhHHH-hhhhccceEEeeeeccCCcccccchhhcc
Q 013951 366 HCGWNSSLE--GISAGVQMLTWPLFADQFCNEKL-IVNVLRIGVSVGVEVDLPITTSNYLCKIS 426 (433)
Q Consensus 366 HGG~gs~~e--al~~GvP~v~~P~~~DQ~~na~~-v~e~~G~G~~l~~~~~~~~~l~~ai~~il 426 (433)
-||||+++- |-.+||-++++-+...|..++.. + ...|+...+...-.+...+.+..++|.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~-~~~gl~~~v~v~l~d~rd~~e~fDrIv 142 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI-AARGLEDNVEVRLQDYRDFEEPFDRIV 142 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH-HHcCCCcccEEEeccccccccccceee
Confidence 568887664 77779999999999999999997 6 599999544444445555555455543
No 206
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=70.18 E-value=46 Score=32.48 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++.+.+++ .++|++|.... +..+|+++|||++.+
T Consensus 364 ~l~~~i~~--~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACA--AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhh--cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 56778888 89999999864 578999999999875
No 207
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=70.13 E-value=8 Score=33.03 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhh
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAAR 49 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (433)
||||+.-=-+. +..-+.+|+++|.+.||+|+++.+..++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 36666654444 445588999999888899999999976653
No 208
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=70.08 E-value=3.6 Score=30.00 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=39.0
Q ss_pred ccchhhHHHHHHcCCcEEecccccccchhHHHhhhhcc-ceEEeeeeccCCcccccchhhcccccc
Q 013951 366 HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLR-IGVSVGVEVDLPITTSNYLCKISCNSQ 430 (433)
Q Consensus 366 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G-~G~~l~~~~~~~~~l~~ai~~il~~~~ 430 (433)
+|-..-+.|++++|+|+|.-.. ......+ .-| -++..+ +.+.+.+.|.++++|+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~--~~~~~~~~~~----~~~el~~~i~~ll~~~~ 64 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF--EDGEHIITYN----DPEELAEKIEYLLENPE 64 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc--CCCCeEEEEC----CHHHHHHHHHHHHCCHH
Confidence 4556688999999999998764 3333333 223 334444 78899999999999874
No 209
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=69.48 E-value=21 Score=31.32 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKT 52 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (433)
-+++.-.++.|.-.-+..++.+..++|..|.+++.+.....+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 46666777889999999998888889999999999865544433
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=69.10 E-value=62 Score=30.84 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhH
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFK 51 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (433)
+++.-.|+.|--.-++.+|..+.++|..|.+++.+...+.++
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 555666788999999999999999999999998876554443
No 211
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=68.99 E-value=12 Score=30.60 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=62.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
.++||.+.-.|+-|-..-++.+++.|.++|+.|-=+-++..++ -..+. ||+.+.+...... -+.. ...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~----gGkR~-----GF~Ivdl~tg~~~-~la~--~~~ 71 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE----GGKRI-----GFKIVDLATGEEG-ILAR--VGF 71 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec----CCeEe-----eeEEEEccCCceE-EEEE--cCC
Confidence 4679999999999999999999999999999998766663332 11111 4666665421111 0100 011
Q ss_pred CCCCCcc-HHHHHHHHH-HhHHHHHHHHHhCCCCCcEEEECCCC
Q 013951 86 DLLPTTD-FARFMKSLH-MLQQPFENLFKEKTLKPCCIISDMCF 127 (433)
Q Consensus 86 ~~~~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~pD~vI~D~~~ 127 (433)
. -+... |......++ -..+.+++.+++ .|+||.|-.-
T Consensus 72 ~-~~rvGkY~V~v~~le~i~~~al~rA~~~----aDvIIIDEIG 110 (179)
T COG1618 72 S-RPRVGKYGVNVEGLEEIAIPALRRALEE----ADVIIIDEIG 110 (179)
T ss_pred C-CcccceEEeeHHHHHHHhHHHHHHHhhc----CCEEEEeccc
Confidence 1 11111 333334443 345566666543 7999999754
No 212
>PRK08760 replicative DNA helicase; Provisional
Probab=68.43 E-value=32 Score=34.02 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=33.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAAR 49 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~ 49 (433)
+++..-|+.|-..-++.+|...+. .|+.|.|++.+.....
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 666777899999999999998875 4999999998865543
No 213
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=68.28 E-value=73 Score=31.01 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
.|+.++..+.. .+.+++.|.+-|-+|..+.+........+..... + . .+......
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~------~-----~------~~~~~v~~--- 340 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW------L-----E------MLGVEVKY--- 340 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH------H-----H------hcCCCcee---
Confidence 47777765555 7888888888899999887663211111111100 0 0 00000000
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
..+ +.+.+ +.+++ .+||++|... .+..+|+++|||.+.+
T Consensus 341 --~~d----------l~~~~-~~l~~--~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 341 --RAS----------LEDDM-EAVLE--FEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred --ccC----------HHHHH-HHHhh--CCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 001 11122 45566 7999999984 3577999999999985
No 214
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=67.16 E-value=72 Score=30.87 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 347 e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 56677787 79999999954 468999999999854
No 215
>PRK08506 replicative DNA helicase; Provisional
Probab=67.13 E-value=65 Score=31.88 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=34.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|-..-++.+|....+.|+.|.|++.+.....+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 66677789999999999999998889999999998665443
No 216
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=67.08 E-value=70 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=33.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLA-QHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 50 (433)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 56677789999999999998887 679999999988655443
No 217
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=66.72 E-value=60 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHhCCCCCcEEEE
Q 013951 102 MLQQPFENLFKEKTLKPCCIIS 123 (433)
Q Consensus 102 ~~~~~l~~~l~~~~~~pD~vI~ 123 (433)
.....+.+++++ .+||+||+
T Consensus 108 ~~~~~L~~iIr~--~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIRE--FRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHH--cCCEEEEe
Confidence 355778889999 99999987
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=66.32 E-value=30 Score=28.90 Aligned_cols=45 Identities=13% Similarity=-0.064 Sum_probs=36.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
+++.-.|+.|--.-++.++.+..+.|..|.+++.+...+.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 466667888999999999999999999999999987666554433
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=66.11 E-value=84 Score=26.82 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhh----hHHHHHHhhhCCCCeEEEE
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAAR----FKTVIARAIKSGLQIRLIE 68 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 68 (433)
.-|+|+=..+-|-..-...||..++.+|..|.+++...++.. ++...+.. ++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l-----~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL-----GVPFYV 61 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH-----TEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh-----ccccch
Confidence 346666667889999999999999999999999998876533 33333333 566654
No 220
>PRK09165 replicative DNA helicase; Provisional
Probab=65.27 E-value=61 Score=32.31 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=32.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC---------------CCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQH---------------GAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~r---------------GH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|-..-++.+|...+.+ |..|.+++.+...+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5667778999999999999888753 7899999988665443
No 221
>PRK14099 glycogen synthase; Provisional
Probab=65.18 E-value=12 Score=37.08 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCe-EEeCcccHhh-hh-cCCCceeeec---ccchh-hHHHHHHcCCcEEeccccc--ccchhHHHhhhh--ccceEEee
Q 013951 341 RGL-LIRGWAPQVL-IL-SHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFA--DQFCNEKLIVNV--LRIGVSVG 409 (433)
Q Consensus 341 ~nv-~~~~~~pq~~-lL-~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~e~--~G~G~~l~ 409 (433)
.++ .+.++-.+.. ++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |-........+. .+.|..++
T Consensus 350 ~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~ 427 (485)
T PRK14099 350 GQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS 427 (485)
T ss_pred CCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC
Confidence 444 4556633322 23 34666 764 34444 6689999997766654322 322111111011 15687776
Q ss_pred eeccCCcccccchhh---ccccc
Q 013951 410 VEVDLPITTSNYLCK---ISCNS 429 (433)
Q Consensus 410 ~~~~~~~~l~~ai~~---il~~~ 429 (433)
. -+.+.+.++|.+ +++|+
T Consensus 428 ~--~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 428 P--VTADALAAALRKTAALFADP 448 (485)
T ss_pred C--CCHHHHHHHHHHHHHHhcCH
Confidence 5 467889999987 55554
No 222
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.67 E-value=26 Score=34.77 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
-+++.-.|+.|--.-.+.++.+.+++|..|.+++.+...+.+....++. ++.+..+- +.+. .. ....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l-----g~~~~~~~----~~g~---l~-~~~~ 331 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW-----GIDFEEME----QQGL---LK-IICA 331 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc-----CCChHHHh----hCCc---EE-EEEc
Confidence 4677777899999999999999999999999999987776665554433 22211100 0000 00 0000
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP 128 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 128 (433)
.+. ....+.....+.+.+++ .++|+||.|.+..
T Consensus 332 ~p~-----~~~~~~~~~~i~~~i~~--~~~~~vvIDsi~~ 364 (484)
T TIGR02655 332 YPE-----SAGLEDHLQIIKSEIAD--FKPARIAIDSLSA 364 (484)
T ss_pred ccc-----cCChHHHHHHHHHHHHH--cCCCEEEEcCHHH
Confidence 000 00112345566677777 8999999999774
No 223
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=64.63 E-value=33 Score=30.80 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHC---CCEEEEEECCcchh
Q 013951 20 HLIPMFDIARLLAQH---GAIVTIVTTPVNAA 48 (433)
Q Consensus 20 H~~P~l~La~~L~~r---GH~Vt~~~~~~~~~ 48 (433)
|.--+.+|+++|.+. |++|+++.+...+.
T Consensus 12 ~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 12 NAPGLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 334477888888763 47999999886654
No 224
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=64.55 E-value=8.7 Score=32.48 Aligned_cols=39 Identities=15% Similarity=-0.011 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
+||++.-.|+.|=+.-.+.+.++|.++|++|+++.++..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 367887778777777667999999999999999998844
No 225
>PRK05636 replicative DNA helicase; Provisional
Probab=64.36 E-value=41 Score=33.56 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=32.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLA-QHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|--.-++.+|...+ +.|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 56677789999999999998876 458999999988665433
No 226
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=64.23 E-value=39 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 20 HLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 20 H~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
|..-+.+|+++|.+. |+|+++.+...+.
T Consensus 12 ~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 12 HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 344588999999998 7999999886654
No 227
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=64.10 E-value=81 Score=31.62 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
..+++++++ .+||++|.+.+ +..+|+++|||++.+
T Consensus 427 ~~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 427 WHLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 366777877 89999999864 688999999999885
No 228
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=64.06 E-value=7 Score=32.70 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
||.++. +.|++- ..|+++..+|||+||.++-.
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 566654 445543 46899999999999999854
No 229
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=64.00 E-value=80 Score=30.82 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 50 (433)
+++...|+.|--.-++.+|..++. .|+.|.+++.+.....+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 566777889999999999999876 59999999998766544
No 230
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=63.88 E-value=23 Score=29.30 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHhCCCCCcEEEECCCCcchHHHH----HH-c-CCCcEEEec
Q 013951 102 MLQQPFENLFKEKTLKPCCIISDMCFPWTVDTA----AK-F-NVPRIIFHG 146 (433)
Q Consensus 102 ~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A----~~-~-giP~v~~~~ 146 (433)
.+.+.+.+++++ .+||+||+-..+.....++ +. + ++|++.+.|
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 456688999999 9999999987654333121 22 3 477776543
No 231
>PRK09620 hypothetical protein; Provisional
Probab=63.81 E-value=13 Score=32.75 Aligned_cols=38 Identities=18% Similarity=-0.063 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCChHH------------HHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIP------------MFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P------------~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.+||++...|++=.+.| =..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46788777765544433 268999999999999999765
No 232
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=63.70 E-value=39 Score=29.98 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHCCCEEEEEECCcchhh
Q 013951 21 LIPMFDIARLLAQHGAIVTIVTTPVNAAR 49 (433)
Q Consensus 21 ~~P~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (433)
.--+.+|+++|++.| +|+++.+..++..
T Consensus 13 a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 13 SPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 344889999999988 8999999866553
No 233
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=63.65 E-value=24 Score=32.12 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
-.+.+|.+.-.|+-|--.-.=+|..+|.++||.|-++.-.+.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 345688888899999999999999999999999999975543
No 234
>PRK11823 DNA repair protein RadA; Provisional
Probab=63.34 E-value=80 Score=30.98 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFK 51 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (433)
-+++.-.|+.|--.-++.+|..+.++|+.|.+++.+...+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 3566666788999999999999998899999999886655443
No 235
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=63.07 E-value=32 Score=26.51 Aligned_cols=45 Identities=18% Similarity=-0.031 Sum_probs=36.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
++..+.++..|-.....++..|.++|++|.++......+.+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i 46 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA 46 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH
Confidence 567777899999999999999999999999997665444444433
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=62.95 E-value=15 Score=32.97 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHH
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKT 52 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (433)
+..++|+=.++.|-..=..+||.+|.++|+.|+|++.+.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578888888888888899999999988999999998855544443
No 237
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=62.82 E-value=11 Score=36.89 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=35.4
Q ss_pred CCCcEEEEEcCCCCCChHHH------------HHHHHHHHHCCCEEEEEECCc
Q 013951 5 ASQVHFLLLPYLAPGHLIPM------------FDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~------------l~La~~L~~rGH~Vt~~~~~~ 45 (433)
.+.+||++...|++=.+.|. .+||+++..||++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 45789999999988888775 689999999999999999773
No 238
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=61.86 E-value=61 Score=31.92 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 386 e~~~~i~~--~~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEK--YKPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHh--cCCCEEEecCC---cchhhhhcCCCEEEc
Confidence 56677777 89999998864 467999999999885
No 239
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=61.81 E-value=87 Score=34.03 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
.++.+++++ .+||++|.... ...+|+++|||++...
T Consensus 379 ~el~~~i~~--~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 379 AGLLRVMRE--KMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHh--cCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 366778888 89999999754 4779999999999755
No 240
>PRK05748 replicative DNA helicase; Provisional
Probab=61.28 E-value=96 Score=30.47 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhhh
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAARF 50 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 50 (433)
=+++...|+.|-..-++.+|...+. .|+.|.|++.+...+.+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 3677778899999999999999874 59999999988665543
No 241
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=61.23 E-value=1e+02 Score=30.30 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++.+.+++ .+||++|.... +..+|+++|||++.+
T Consensus 378 e~~~~i~~--~~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEK--LKPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHh--cCCCEEEEcCc---chhhhhhcCCCeEec
Confidence 55566777 79999998864 578999999999875
No 242
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=60.75 E-value=12 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
+||++.-.++-|=+. ...+.+.|.++|++|.++.++.-...+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 478888777766665 899999999999999999988554433
No 243
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.49 E-value=96 Score=30.00 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEE
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIE 68 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (433)
++..|+++-.=+.|-..-+-.||+.|.++|+.|.+++...++...-+.+.+.+. ..++.|+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~-q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE-QVGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH-HcCCceec
Confidence 456677777778899999999999999999999999999887544444333321 11455544
No 244
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=59.94 E-value=1e+02 Score=25.73 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcCCCcEEE
Q 013951 104 QQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 104 ~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~ 144 (433)
...+.+++++ .+||+|+.-.-.. .+..+|.++|.|++.=
T Consensus 80 a~~l~~~i~~--~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 80 AKALAALIKK--EKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHH--hCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 4556667777 7899999876554 6788999999999873
No 245
>PRK07773 replicative DNA helicase; Validated
Probab=59.83 E-value=87 Score=33.89 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=34.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|-..-++.+|...+.+ |..|.|++.+.....+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 6777778999999999999998755 8899999988666543
No 246
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.75 E-value=16 Score=31.34 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
.+||++.-.|+-+= .=...+.++|.+.||+|+++.++.-.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~ 42 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQ 42 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 46788777665554 56899999999999999999998543
No 247
>PRK14098 glycogen synthase; Provisional
Probab=59.30 E-value=17 Score=36.12 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=30.7
Q ss_pred CCcEEEEEcCC------CCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 6 SQVHFLLLPYL------APGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 6 ~~~~il~~~~~------~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+.+||++++.- +.|=-.-+-+|.++|+++||+|.++.+..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34899998753 33444456789999999999999999864
No 248
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=59.22 E-value=21 Score=29.28 Aligned_cols=34 Identities=29% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEE
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPFVWV 315 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 315 (433)
.+|+|+||......+.++..++++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999998877777888888888877533433
No 249
>PRK06988 putative formyltransferase; Provisional
Probab=58.60 E-value=1.3e+02 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+||+|+-.+. ..+...++|.++||+|..+.+..
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 5898885443 34566778888899998887764
No 250
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=58.26 E-value=1.2e+02 Score=25.86 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=62.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc---hhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN---AARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (433)
+....|.+++..+.|-....+.+|-....+|+.|.++-.-.. ... ...... . .++.+..... +
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE-~~~l~~---l-~~v~~~~~g~---------~ 85 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGE-RNLLEF---G-GGVEFHVMGT---------G 85 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCH-HHHHhc---C-CCcEEEECCC---------C
Confidence 345689999999999999999999999999999998842211 111 111211 1 2466665431 1
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF 127 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~ 127 (433)
+.... ... ..-............+.+.+ .++|+||.|-+.
T Consensus 86 ~~~~~--~~~--~e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 86 FTWET--QDR--ERDIAAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred CcccC--CCc--HHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 11111 011 12223333444555666777 899999999765
No 251
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=57.88 E-value=64 Score=26.59 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.6
Q ss_pred eecccchh------hHHHHHHcCCcEEecc
Q 013951 363 FLTHCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 363 ~ItHGG~g------s~~eal~~GvP~v~~P 386 (433)
+++|+|-| .+.+|...++|||++.
T Consensus 67 ~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 67 CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 88888854 6779999999999996
No 252
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=57.38 E-value=28 Score=33.92 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
.+|||++-.+++-| +||+.|++-++-..+++.+.|... . .+.. .. ..+ . +..
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~-~-----------~~~~--~~------~~~--~-~~~ 55 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGF-P-----------DDEL--LP------ADS--F-SIL 55 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHH-h-----------cccc--cc------ccC--c-CcC
Confidence 46999999888877 579999988876666666644321 0 0000 00 000 0 000
Q ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcCCCcE
Q 013951 87 LLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFNVPRI 142 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v 142 (433)
+ .+.+.++.++ .++|+||.+.-.. ....+++++|||+.
T Consensus 56 ---d-------------~~~l~~~a~~--~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 56 ---D-------------KSSVQSFLKS--NPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ---C-------------HHHHHHHHHH--cCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 0 2355567777 8999999876443 33456778999964
No 253
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=57.21 E-value=1.1e+02 Score=26.49 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=58.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
-+++.-.|+.|--.-++.++....++|+.|.+++.+...+.+.+..... +..+... ...... ..+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~-----~~~~~~~--------~~~~l~-~~~~ 83 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK-----GWDLEDY--------IDKSLY-IVRL 83 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc-----CCChHHH--------HhCCeE-EEec
Confidence 4555666688888888888888888899999999987666555543322 2221110 000000 0000
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF 127 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~ 127 (433)
. ...+......+...+...+++ .+++++|.|.+.
T Consensus 84 ~---~~~~~~~~~~l~~~~~~~i~~--~~~~~vVIDsls 117 (224)
T TIGR03880 84 D---PSDFKTSLNRIKNELPILIKE--LGASRVVIDPIS 117 (224)
T ss_pred C---HHHHHhhHHHHHHHHHHHHHH--hCCCEEEEcChH
Confidence 0 111222234455566777777 789999999765
No 254
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=57.14 E-value=1.4e+02 Score=30.03 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 109 NLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 109 ~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
+.+++ .+||++|..... ..+|+++|||++..
T Consensus 392 ~~l~~--~~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEM--LKPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHh--cCCCEEEecCcc---chhHhhcCCCEEEc
Confidence 55677 899999998753 47999999999764
No 255
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=56.99 E-value=1.2e+02 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+||+|+-.+.. .+...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 47888755443 4667788888999998777643
No 256
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=56.01 E-value=19 Score=30.47 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchh
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAA 48 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~ 48 (433)
+||++.-.|+-| ..=...|+++|.+ .||+|.++.++.-..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~ 42 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQ 42 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHH
Confidence 478888778777 5559999999999 599999999995443
No 257
>PRK10867 signal recognition particle protein; Provisional
Probab=55.85 E-value=1.8e+02 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARF 50 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~ 50 (433)
+.-|+++-.++-|-..-...||..|+++ |+.|.+++...++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 4567777778889999999999999999 9999999998766543
No 258
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=55.24 E-value=1.3e+02 Score=30.32 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
.++.+.+++ .+||+||.+. ....+|+++|||++.++
T Consensus 352 ~el~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 367788888 8999999886 35779999999998764
No 259
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=54.38 E-value=17 Score=31.89 Aligned_cols=20 Identities=40% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCEEEEEECC
Q 013951 25 FDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 25 l~La~~L~~rGH~Vt~~~~~ 44 (433)
.+||++|.++||+|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 67889999999999999744
No 260
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=54.31 E-value=1.2e+02 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.2
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 013951 14 PYLAPGHLIPMFDIARLLAQHGAIVTIV 41 (433)
Q Consensus 14 ~~~~~GH~~P~l~La~~L~~rGH~Vt~~ 41 (433)
+.+.-|.-.-.+.||+.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456788888999999999999999997
No 261
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=54.13 E-value=1.2e+02 Score=24.90 Aligned_cols=41 Identities=24% Similarity=0.149 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhCCCCCcEEEECCCCc---chHHHHHHcCCCcEEEe
Q 013951 103 LQQPFENLFKEKTLKPCCIISDMCFP---WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 103 ~~~~l~~~l~~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~~ 145 (433)
....+.+++++ .+||+|+.-.-.. .+..+|.++|.|++.-.
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 34566677777 7899999776443 67889999999998843
No 262
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.10 E-value=7.9 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
||.++-.|.+|+ ++|..|.++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 455665555554 78999999999999999874
No 263
>PLN02939 transferase, transferring glycosyl groups
Probab=53.95 E-value=26 Score=37.50 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=53.3
Q ss_pred CCCeEEeCcccHh---hhhcCCCceeeecc---cc-hhhHHHHHHcCCcEEeccccc--ccchh--HHHhhhhccceEEe
Q 013951 340 GRGLLIRGWAPQV---LILSHPAVGGFLTH---CG-WNSSLEGISAGVQMLTWPLFA--DQFCN--EKLIVNVLRIGVSV 408 (433)
Q Consensus 340 ~~nv~~~~~~pq~---~lL~~~~~~~~ItH---GG-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~e~~G~G~~l 408 (433)
.++|.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |-..+ ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4678888887764 47888888 7753 22 237899999999999876543 22211 11111133567666
Q ss_pred eeeccCCcccccchhhccc
Q 013951 409 GVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 409 ~~~~~~~~~l~~ai~~il~ 427 (433)
+. .+.+.+.++|.++++
T Consensus 914 ~~--~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT--PDEQGLNSALERAFN 930 (977)
T ss_pred cC--CCHHHHHHHHHHHHH
Confidence 54 467778888877764
No 264
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=53.87 E-value=7.4 Score=38.27 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=48.8
Q ss_pred EEeCcccHhhh---hcCCCceeeec---ccchh-hHHHHHHcCCc----EEecccccccchhHHHhhhhccceEEeeeec
Q 013951 344 LIRGWAPQVLI---LSHPAVGGFLT---HCGWN-SSLEGISAGVQ----MLTWPLFADQFCNEKLIVNVLRIGVSVGVEV 412 (433)
Q Consensus 344 ~~~~~~pq~~l---L~~~~~~~~It---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~ 412 (433)
++...+++.++ +..+++ ++. +=|+| ++.||+++|+| +|+--..+ .+..+ +-|+.+++
T Consensus 339 ~l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP-- 406 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP-- 406 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC--
Confidence 34456666654 566777 765 44655 77799999999 55543332 22233 24667765
Q ss_pred cCCcccccchhhccccc
Q 013951 413 DLPITTSNYLCKISCNS 429 (433)
Q Consensus 413 ~~~~~l~~ai~~il~~~ 429 (433)
.+.+.++++|.++|+.+
T Consensus 407 ~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 407 YDIDGMADAIARALTMP 423 (456)
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 57889999999999864
No 265
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=52.90 E-value=1.3e+02 Score=28.87 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCD 86 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (433)
.+|+++.. +-.-.+.|++.|.+-|-+|..+..........+......... ...+.. .
T Consensus 271 g~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~~---------------~-- 327 (398)
T PF00148_consen 271 GKRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVII---------------D-- 327 (398)
T ss_dssp T-EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEEE---------------S--
T ss_pred CceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEEe---------------C--
Confidence 35677643 335677888888888999888876655433222111111111 011110 0
Q ss_pred CCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 87 LLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
.-..++.+.+++ .+||++|.+.. ...+|+++++|++.+
T Consensus 328 ---------------~~~~~~~~~l~~--~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 328 ---------------PDPEEIEELLEE--LKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp ---------------CBHHHHHHHHHH--HT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred ---------------CCHHHHHHHHHh--cCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 012467788888 89999999964 678899998888874
No 266
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.64 E-value=77 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
+.||++...+..+|-.----++..|...|++|.-.......+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999998765444333
No 267
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=52.63 E-value=1.4e+02 Score=25.24 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE---CC-cchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT---TP-VNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
+.=|.+++..+.|-..-.+.+|-.-.-+|..|.++- .. .+-+ ....... +.++.+...+ ..+
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE--~~~~~~~---~~~v~~~~~~---------~g~ 93 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGE--EAALEKF---GLGVEFHGMG---------EGF 93 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhH--HHHHHhh---ccceeEEecC---------Cce
Confidence 344778888899988877777766666777777663 22 1111 1111111 2346666543 332
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP 128 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 128 (433)
......... .. .+....-+...+.+++ .++|+||.|-+.+
T Consensus 94 tw~~~~~~~---d~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 94 TWETQDREA---DI-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred eCCCcCcHH---HH-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 222111111 11 3333444556677777 8999999998653
No 268
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=52.33 E-value=16 Score=36.67 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=46.2
Q ss_pred cHhhhhcCCCceeeec---ccchh-hHHHHHHcCCcEEecccccccchhHHHhhhhc-cceEEeeeec-----cCCcccc
Q 013951 350 PQVLILSHPAVGGFLT---HCGWN-SSLEGISAGVQMLTWPLFADQFCNEKLIVNVL-RIGVSVGVEV-----DLPITTS 419 (433)
Q Consensus 350 pq~~lL~~~~~~~~It---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~-G~G~~l~~~~-----~~~~~l~ 419 (433)
+..+++.-|++ +|. +=|+| ++.||+++|+|+|.....+= ..+...+.+.- ..|+.+.... -+.++++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf-~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGF-GCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcch-hhhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46777877888 665 45544 88999999999999875321 01222231111 2577665322 2346677
Q ss_pred cchhhccccc
Q 013951 420 NYLCKISCNS 429 (433)
Q Consensus 420 ~ai~~il~~~ 429 (433)
++|.++++.+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 7777766443
No 269
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=51.72 E-value=82 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred eecccchh------hHHHHHHcCCcEEecc
Q 013951 363 FLTHCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 363 ~ItHGG~g------s~~eal~~GvP~v~~P 386 (433)
+++|+|-| .+.||...++|||++.
T Consensus 64 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 64 VVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 88888855 6679999999999995
No 270
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=51.57 E-value=19 Score=30.26 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
||++.-.|+-|-+. ...|.+.|.++|++|.++.++.-..
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~ 39 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKE 39 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHH
Confidence 35555556666655 5899999999999999999995443
No 271
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=51.48 E-value=1.3e+02 Score=29.53 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
-+++.-.|+.|--.-++.++..+.++|+.|.+++.+.....+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 355666678899999999999999999999999988655443
No 272
>PRK00784 cobyric acid synthase; Provisional
Probab=51.34 E-value=2.1e+02 Score=28.46 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.3
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPY-LAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~-~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
+|++... ..-|-..-...|++.|+++|++|..+-+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4555533 4468899999999999999999998866
No 273
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=50.99 E-value=1.5e+02 Score=27.05 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
.+++||+++.++..+.+. +|.+...+. +++|..+.+.. +.+....++. ++.+..++.. +
T Consensus 87 ~~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~-----gIp~~~~~~~------~--- 147 (286)
T PRK06027 87 AERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNH--DDLRSLVERF-----GIPFHHVPVT------K--- 147 (286)
T ss_pred ccCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHh-----CCCEEEeccC------c---
Confidence 467899999988855554 444454443 68888887543 2333333322 6777665420 0
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC-cchHHHHHHcCCCcEE
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF-PWTVDTAAKFNVPRII 143 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~-~~~~~~A~~~giP~v~ 143 (433)
.+. ......+.+.+++ .+||++|.=.|. .-...+-+.+.-.++-
T Consensus 148 ~~~---------------~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l~~~~~~iiN 192 (286)
T PRK06027 148 ETK---------------AEAEARLLELIDE--YQPDLVVLARYMQILSPDFVARFPGRIIN 192 (286)
T ss_pred ccc---------------chhHHHHHHHHHH--hCCCEEEEecchhhcCHHHHhhccCCcee
Confidence 000 0123356777888 899999976544 3445555555444444
No 274
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=50.89 E-value=25 Score=29.30 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=28.5
Q ss_pred EEEEcCCCCCChHH-HHHHHHHHHH-CCCEEEEEECCcchh
Q 013951 10 FLLLPYLAPGHLIP-MFDIARLLAQ-HGAIVTIVTTPVNAA 48 (433)
Q Consensus 10 il~~~~~~~GH~~P-~l~La~~L~~-rGH~Vt~~~~~~~~~ 48 (433)
|++.-.++ ||... ...+.++|++ +||+|.++.++.-..
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 44444444 78766 8899999985 599999999996554
No 275
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=50.76 E-value=1.4e+02 Score=27.20 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=58.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
.+++||+++.++..+.+ .+|.+..... +++|.++.+.. ..+.....+. ++.+..++.. +
T Consensus 87 ~~~~ri~vl~Sg~g~nl---~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~-----gIp~~~~~~~------~--- 147 (286)
T PRK13011 87 AARPKVLIMVSKFDHCL---NDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWH-----GIPFHHFPIT------P--- 147 (286)
T ss_pred ccCceEEEEEcCCcccH---HHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHh-----CCCEEEeCCC------c---
Confidence 45789999998864443 4555554443 78998886531 1233333322 6776665310 0
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC-cchHHHHHHcCCCcEEE
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF-PWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~-~~~~~~A~~~giP~v~~ 144 (433)
.+ . ......+.+.+++ .++|++|.-.+. .-...+-+.+.-..+-+
T Consensus 148 ~~---~------------~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 148 DT---K------------PQQEAQVLDVVEE--SGAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred Cc---h------------hhhHHHHHHHHHH--hCcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 00 0 0112356677888 899999876554 35555666555555544
No 276
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.66 E-value=34 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 20 HLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 20 H~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|...|...|++|.++||+|+.+...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4567899999999999999999987
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=50.62 E-value=2.1e+02 Score=27.96 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEECCcchhhh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLA-QHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 50 (433)
+.-++++-.++-|-..-+..||..|. ++|+.|.++.....+...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 44677788889999999999999997 589999999998766543
No 278
>PLN02939 transferase, transferring glycosyl groups
Probab=50.49 E-value=1.6e+02 Score=31.91 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCC------CCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 5 ASQVHFLLLPYL------APGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 5 ~~~~~il~~~~~------~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
.+++||+|+++- +.|=..-.-.|.++|++.||+|.++++...
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 567999998753 233334467899999999999999998754
No 279
>PRK08006 replicative DNA helicase; Provisional
Probab=50.30 E-value=1.9e+02 Score=28.70 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=33.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAAR 49 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~ 49 (433)
+++..-|+.|-..-.+.+|...+. .|+.|.|++.+...+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~q 267 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQ 267 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 566777899999999999999874 5999999998865543
No 280
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.16 E-value=42 Score=29.06 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCC---------eEEEEecCCCccCCCCCCCCCCCC
Q 013951 17 APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQ---------IRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 17 ~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+.|--.=+..++.-+...||.|+.++++..... ++.++-..++. +.+.++... ...
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~re---fi~qm~sl~ydv~~~~l~G~l~~~~~~~~--------~~~---- 102 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVRE---FIKQMESLSYDVSDFLLSGRLLFFPVNLE--------PVN---- 102 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHH---HHHHHHhcCCCchHHHhcceeEEEEeccc--------ccc----
Confidence 567777788889999999999999999965433 33333222222 222222110 000
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP 128 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 128 (433)
.-....+...+.+.+.++. ++-|++|.|.+..
T Consensus 103 -------~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~ 134 (235)
T COG2874 103 -------WGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSA 134 (235)
T ss_pred -------cChHHHHHHHHHHHhhHHh--hcCCEEEEecccH
Confidence 0112223345566666676 8999999998875
No 281
>PLN02470 acetolactate synthase
Probab=49.96 E-value=77 Score=32.39 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=52.4
Q ss_pred eeCCCcCCCh--hhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCc--------ccHhhhh
Q 013951 286 CLGSICNLPS--SQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGW--------APQVLIL 355 (433)
Q Consensus 286 s~Gs~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~--------~pq~~lL 355 (433)
+|||-...+. ...+.+++.|++.+++.|+-+.+....... +.+. ..+++....- .-...-.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~------dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIH------QALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHH------HHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 4666555332 235668888888888888888776532211 1111 1122322111 1111111
Q ss_pred cCCCceeeecccchh------hHHHHHHcCCcEEecc
Q 013951 356 SHPAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 356 ~~~~~~~~ItHGG~g------s~~eal~~GvP~v~~P 386 (433)
......++++|.|-| .+.+|...++|||++.
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 122344588998855 7789999999999995
No 282
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=49.83 E-value=7 Score=38.52 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=47.8
Q ss_pred EEeCcccHhh---hhcCCCceeeec---ccchh-hHHHHHHcCCc---EEecccccccchhHHHhhhhccceEEeeeecc
Q 013951 344 LIRGWAPQVL---ILSHPAVGGFLT---HCGWN-SSLEGISAGVQ---MLTWPLFADQFCNEKLIVNVLRIGVSVGVEVD 413 (433)
Q Consensus 344 ~~~~~~pq~~---lL~~~~~~~~It---HGG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~ 413 (433)
++.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|++.-.+ .-. +...-|+.+++ .
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~------G~~-~~~~~g~lv~p--~ 412 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA------GAA-EELSGALLVNP--Y 412 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc------cch-hhcCCCEEECC--C
Confidence 3456777765 4667777 663 44655 66899999999 44443221 111 12223566654 4
Q ss_pred CCcccccchhhccccc
Q 013951 414 LPITTSNYLCKISCNS 429 (433)
Q Consensus 414 ~~~~l~~ai~~il~~~ 429 (433)
+.+.++++|.++|+++
T Consensus 413 d~~~la~ai~~~l~~~ 428 (460)
T cd03788 413 DIDEVADAIHRALTMP 428 (460)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6788999999999875
No 283
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.75 E-value=36 Score=31.69 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEECCCCcch----------HHHHHHcCCCcEE
Q 013951 101 HMLQQPFENLFKEKTLKPCCIISDMCFPWT----------VDTAAKFNVPRII 143 (433)
Q Consensus 101 ~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~----------~~~A~~~giP~v~ 143 (433)
+.....+.+.+++ .+||++|+-+.+-++ ..+.++++||.++
T Consensus 66 eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 66 EEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 3456677888888 999999999876521 2345689999886
No 284
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=49.41 E-value=1.8e+02 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=29.4
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYL-APGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~-~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.|.+.+.. .-|-..-.+.|++.|.++|.+|.++-+-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence 56666444 4688888999999999999999999865
No 285
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=49.32 E-value=1.6e+02 Score=30.57 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=25.2
Q ss_pred cE-EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 8 VH-FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 8 ~~-il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
+| |+|.|+|.. .+.-|=.....|++.||+|+++.
T Consensus 370 ~rvLv~spHPDD-evi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 370 KRVIIFSPHPDD-DVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred ceEEEEEeCCCc-hHhhhHHHHHHHHHCCCcEEEEE
Confidence 44 555566654 56667777888999999999974
No 286
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=48.91 E-value=1.9e+02 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEE
Q 013951 107 FENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 107 l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 143 (433)
+.+.+++ .+||++|.... +..+|+++|||++-
T Consensus 389 ~~~~~~~--~~pDliig~s~---~~~~A~klgiP~vd 420 (461)
T TIGR01860 389 FFEVLDL--IKPDVIFTGPR---VGELVKKLHIPYVN 420 (461)
T ss_pred HHHHHHh--cCCCEEEeCCc---chhhHhhcCCCEEe
Confidence 4455666 79999999864 46699999999973
No 287
>PRK07004 replicative DNA helicase; Provisional
Probab=48.81 E-value=1.9e+02 Score=28.56 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEECCcchhhh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTPVNAARF 50 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 50 (433)
+++..-|+.|-..-++.+|..++. .|+.|.|++.+...+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 666777899999999999998864 69999999998665443
No 288
>PRK13604 luxD acyl transferase; Provisional
Probab=48.71 E-value=45 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
++...++++++..++-..+..+|+.|.++|..|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3557888888988888779999999999999987663
No 289
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=48.30 E-value=24 Score=29.63 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
+||++.-.++.| ..-...+.++|.++|++|.++.++.-.
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~ 39 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAAT 39 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHH
Confidence 367776666554 445679999999999999999988543
No 290
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=47.42 E-value=44 Score=30.66 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCC----hHHHHHHHHHHHHCCCEEEEEEC
Q 013951 6 SQVHFLLLPYLAPGH----LIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 6 ~~~~il~~~~~~~GH----~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
+++||+++..+..+- +.-..+++++|.+.||+|..+..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 467999998654432 45577899999999999988854
No 291
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.04 E-value=1.2e+02 Score=26.26 Aligned_cols=36 Identities=28% Similarity=0.049 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
++.++|++ + ++.|++- ..|++.|.++||+|+.++..
T Consensus 4 ~~~~~vlI-t-Gasg~iG--~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALV-T-GAARGLG--RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEE-e-CCCchHH--HHHHHHHHHCCCeEEEEeCC
Confidence 33445655 3 5667654 67899999999999775544
No 292
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=46.37 E-value=22 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 19 GHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 19 GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
-.+.-.+=++..|.++||+|++++++.-.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~ 39 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAAL 39 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHH
Confidence 33444778899999999999999999443
No 293
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=45.98 E-value=2.8e+02 Score=27.30 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=59.9
Q ss_pred EEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 10 FLLL-PYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 10 il~~-~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
|++. +...-|-..-...|++.|+++|++|..+-+.... +....... .. +.+. ...+.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--~D~~~~~~-~~----------------g~~~--~~ld~- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--IDPMFHTQ-AT----------------GRPS--RNLDS- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--CCHHHHHH-Hh----------------CCch--hhCCc-
Confidence 4444 3334577888999999999999999999754211 10000000 00 1110 00000
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCC-------C-----cchHHHHHHcCCCcEEEecch
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMC-------F-----PWTVDTAAKFNVPRIIFHGFS 148 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-------~-----~~~~~~A~~~giP~v~~~~~~ 148 (433)
+. .-.+.+.+.+.+...+.|++|++.. . .....+|+.++.|+|.+....
T Consensus 60 ----~~-------~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 60 ----FF-------MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ----cc-------CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 00 0123334444433357899997764 1 136799999999999987655
No 294
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=45.61 E-value=2.8e+02 Score=26.52 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
.++.+.+++ .+||++|.+.. ....++++|+|++.+.
T Consensus 338 ~~~~~~~~~--~~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 338 EELEELIRE--LKPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHHhh--cCCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 466677787 89999999964 5778899999998653
No 295
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=45.59 E-value=43 Score=27.78 Aligned_cols=37 Identities=24% Similarity=0.075 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
.+..+|++++.++ -.=-=-+.+|+.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEE
Confidence 3567899998664 222237899999999999999944
No 296
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=45.04 E-value=50 Score=27.25 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=22.7
Q ss_pred CeEEEEeeCCCcCCChhhHHHHHHHHHhCC
Q 013951 280 SSVVYVCLGSICNLPSSQLIELGLGLEASN 309 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 309 (433)
+..+|+++||-.....+.++..++.+...+
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 447999999988666667777777776643
No 297
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=44.96 E-value=1.4e+02 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhH
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFK 51 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (433)
.-+++.-.++.|--.-++.++.+..++|..|.+++.+...+.+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~ 64 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESII 64 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHH
Confidence 34666777788988888888887778899999999876655443
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=44.85 E-value=30 Score=31.11 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhhH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARFK 51 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~ 51 (433)
-+++...++.|--.-+..+|..++.. |+.|.|++.+...+.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 45666667889999999999999877 99999999986554443
No 299
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=44.70 E-value=2.6e+02 Score=25.92 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCC---C--hHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 8 VHFLLLPYLAPG---H--LIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 8 ~~il~~~~~~~G---H--~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
.-|++.|+.+.| + ..-+..|++.|.++|.+|.+++++...+..++..+.. +-.... +..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~-----~~~~~~---------l~g-- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL-----PGELRN---------LAG-- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC-----Cccccc---------CCC--
Confidence 456777755333 2 2357899999998899999998876554433322110 000000 000
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHG 146 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 146 (433)
.. -..++..++ .+-|++|+- ..+...+|..+|+|+|.+..
T Consensus 239 -------~~-----------sL~el~ali----~~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 -------ET-----------SLDEAVDLI----ALAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -------CC-----------CHHHHHHHH----HhCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 00 122444444 367888865 35779999999999998754
No 300
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.47 E-value=30 Score=33.64 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
.++.+.+++ .+||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 466777888 89999999875 5778999999998753
No 301
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=44.47 E-value=62 Score=26.73 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHHHhCCCCCcEEEECCCCcc---------------hHHHHHHcCCCcEEEecc
Q 013951 100 LHMLQQPFENLFKEKTLKPCCIISDMCFPW---------------TVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 100 ~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~---------------~~~~A~~~giP~v~~~~~ 147 (433)
+....+.+.+++++ .+||.++.+..++. ...++.+.|||+.-++|.
T Consensus 46 l~~I~~~l~~~i~~--~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDE--YQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHH--hCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 44556788999999 89999998876542 134667789998887554
No 302
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=43.80 E-value=1e+02 Score=24.30 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
+|++-+..+.+|-.----++..|..+|++|.-+......+.+.+..
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa 46 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA 46 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 4788899999999999999999999999999998765544444433
No 303
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=43.36 E-value=1.7e+02 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=34.9
Q ss_pred CcEEEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 7 QVHFLLL-PYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 7 ~~~il~~-~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
.+|-.|+ -=++-|...=...||-.|+.-+|.|.++++.+.+..-.++.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~ 66 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFS 66 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHH
Confidence 3443333 33566888888999999999999999999998775433333
No 304
>PRK04148 hypothetical protein; Provisional
Probab=43.30 E-value=97 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.+|++.+-.| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34678887766 43 34688888999999988544
No 305
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.28 E-value=1.5e+02 Score=28.60 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
=|++-=-|+-|--.=++.++..|+++| .|.+++.+.....++--.++. ++.-..+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~~~~~l------------------- 149 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GLPTNNL------------------- 149 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CCCccce-------------------
Confidence 356666678888888999999999999 999999997665544333322 1111000
Q ss_pred CCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc-c--------------------hHHHHHHcCCCcEEEe
Q 013951 89 PTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP-W--------------------TVDTAAKFNVPRIIFH 145 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~-~--------------------~~~~A~~~giP~v~~~ 145 (433)
+.......+.+.+.+++ .+||++|.|.... + ...+|+..||+.+.+-
T Consensus 150 --------~l~aEt~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 150 --------YLLAETNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred --------EEehhcCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 00011134566777777 8999999998643 1 1346777788877753
No 306
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=43.06 E-value=65 Score=32.25 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVI 54 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (433)
-+++.-.++.|--.-+..++.+.+.+|..|.+++.+...+.+.+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 4666666788999999999999999999999999887666554443
No 307
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=43.05 E-value=63 Score=29.59 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE-CCcchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT-TPVNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
+-++++..+.|= =.+.|++|++||.+|.+++ +..--+.+++.+++.. +-+++++.++
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~--~vev~~i~~D 107 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY--KVEVRIIAID 107 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh--CcEEEEEEEe
Confidence 567777555553 3688999999999988887 2233334445454441 1235555544
No 308
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=42.99 E-value=41 Score=29.67 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=28.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchh
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAA 48 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~ 48 (433)
|++.-.|+.+=+.=.+.|.+.|+++ ||+|.++.++.-..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 4444444444446799999999999 99999999985443
No 309
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=42.52 E-value=2.5e+02 Score=25.10 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
=+++.-.|+.|--.-++.+|...+++|..|.+++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 35666667889999999999998889999999998843
No 310
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.43 E-value=1e+02 Score=22.14 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=27.7
Q ss_pred cEEEEEcCCCC--CChHHHHHHHHHHHHCCCEEEEEE
Q 013951 8 VHFLLLPYLAP--GHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 8 ~~il~~~~~~~--GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
-+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888886643 456678999999999999998854
No 311
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=42.38 E-value=51 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCC--cEEEECCCCc-chHHHHHHcCCCcEEEecchH
Q 013951 104 QQPFENLFKEKTLKP--CCIISDMCFP-WTVDTAAKFNVPRIIFHGFSC 149 (433)
Q Consensus 104 ~~~l~~~l~~~~~~p--D~vI~D~~~~-~~~~~A~~~giP~v~~~~~~~ 149 (433)
...+.+++++ ..+ .++|-..+-- ++..+|+++|+|.|.++|+..
T Consensus 46 ~~~l~~~i~~--~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 46 IAQLEQLIEE--LKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHHh--CCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 3466777777 444 3677666553 778899999999999876643
No 312
>PRK12744 short chain dehydrogenase; Provisional
Probab=42.16 E-value=1.6e+02 Score=25.93 Aligned_cols=40 Identities=30% Similarity=0.178 Sum_probs=25.3
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
|+++.-.-|.++++..+.| + -..+|+.|.++|++|.++..
T Consensus 1 ~~~~~l~~k~vlItGa~~g-I--G~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN-L--GGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCCCCCcEEEEECCCch-H--HHHHHHHHHHCCCcEEEEec
Confidence 5543323355666644433 3 46789999999999777653
No 313
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.15 E-value=33 Score=30.36 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCcEEEECCCCc------chHHHHHHcCCCcEEE
Q 013951 104 QQPFENLFKEKTLKPCCIISDMCFP------WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 104 ~~~l~~~l~~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~ 144 (433)
.+.+.+++++ .+.|++|==.+-+ -+..+|+..|||++.+
T Consensus 55 ~e~l~~~l~e--~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLRE--EGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHH--cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3578889999 9999998333333 4577899999999986
No 314
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=41.98 E-value=38 Score=32.50 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
.+||++.-.|+.|= .-...+.+.|.+.|++|.++.++.-...+
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 46888887676555 55899999999999999999998654433
No 315
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=41.96 E-value=38 Score=31.43 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcch
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNA 47 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~ 47 (433)
+||+++-....|++.=...+.+.|+++ +.+|+|++.+...
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~ 42 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFA 42 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHH
Confidence 389999999999999999999999997 9999999988443
No 316
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.82 E-value=2.2e+02 Score=24.15 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=43.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC---cchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP---VNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
|+|+..+..-|-.-+..+++.|++.|-.|.+++-. .+.+.++.+.+... .+.+-.++.+|
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 88888887888777889999999999999998744 45566666666553 23345666664
No 317
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=41.51 E-value=58 Score=25.84 Aligned_cols=33 Identities=24% Similarity=0.048 Sum_probs=29.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 12 LLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 12 ~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
++.++...-+.|..-++...+++|++|+++.+-
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 445578889999999999999999999999986
No 318
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=41.21 E-value=2.3e+02 Score=24.37 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=26.9
Q ss_pred EEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 10 FLLL-PYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 10 il~~-~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
|++. +.+.-|-..-.+.|++.|+++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 3344 344578889999999999999999988863
No 319
>PRK11914 diacylglycerol kinase; Reviewed
Probab=41.15 E-value=94 Score=28.62 Aligned_cols=81 Identities=7% Similarity=-0.047 Sum_probs=47.1
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCce
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVG 361 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 361 (433)
.+.++--|-.....+.+.++.+.+++.+..+.+........ .. .+. ........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~-------~~-~~a---------------~~~~~~~~d~- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHD-------AR-HLV---------------AAALAKGTDA- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHH-------HH-HHH---------------HHHHhcCCCE-
Confidence 44555444433344567778888888887765433322110 00 000 0011122344
Q ss_pred eeecccchhhHHHHH----HcCCcEEeccc
Q 013951 362 GFLTHCGWNSSLEGI----SAGVQMLTWPL 387 (433)
Q Consensus 362 ~~ItHGG~gs~~eal----~~GvP~v~~P~ 387 (433)
+|--||=||+.|++ ..++|+-++|.
T Consensus 68 -vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 -LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred -EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999986 34799999996
No 320
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=41.01 E-value=61 Score=29.51 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=54.2
Q ss_pred cCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchh
Q 013951 291 CNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWN 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~g 370 (433)
...+.+..+.+.+++.+.+.+.||...++.... .+.++++...+-+++.. ||-..-..
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~--------------------rlL~~ld~~~~~~~pK~--~iGySDiT 101 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGAN--------------------RLLPYLDYDLIRANPKI--FVGYSDIT 101 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH--------------------HhhhhCCHHHHhhCCeE--EEEecHHH
Confidence 344566788899999999999999998875321 23355555555566766 88777777
Q ss_pred hHHHHHHc--CCcEEecccccc
Q 013951 371 SSLEGISA--GVQMLTWPLFAD 390 (433)
Q Consensus 371 s~~eal~~--GvP~v~~P~~~D 390 (433)
+++-+++. |++.+-=|...+
T Consensus 102 aL~~~l~~~~g~~t~hGp~~~~ 123 (282)
T cd07025 102 ALHLALYAKTGLVTFHGPMLAS 123 (282)
T ss_pred HHHHHHHHhcCceEEECccccc
Confidence 77777653 777777675443
No 321
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=40.99 E-value=1.3e+02 Score=30.52 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcc--------c--HhhhhcCCCceeeec
Q 013951 296 SQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWA--------P--QVLILSHPAVGGFLT 365 (433)
Q Consensus 296 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~--------p--q~~lL~~~~~~~~It 365 (433)
...+.+++.|++.+++.|.-+.+..... +-+.+. ..+++....-. - +..+-..+.+ +++
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~------l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~ 82 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILP------LYDALS---QSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMA 82 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEE
Confidence 3456677888888888887776654321 111111 12233221110 0 1112223444 888
Q ss_pred ccchh------hHHHHHHcCCcEEecc
Q 013951 366 HCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 366 HGG~g------s~~eal~~GvP~v~~P 386 (433)
|.|-| .+.+|-..++|+|++.
T Consensus 83 t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 83 CSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 87754 7889999999999995
No 322
>PTZ00445 p36-lilke protein; Provisional
Probab=40.83 E-value=2.4e+02 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.9
Q ss_pred CChHH-HHHHHHHHHHCCCEEEEEECCcchh
Q 013951 19 GHLIP-MFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 19 GH~~P-~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
+|+.| +..+.++|.++|-.|+++|......
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 45666 8899999999999999999776543
No 323
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.54 E-value=51 Score=28.21 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
..++||.+-..|+-|-..-|+.=|++|+++|-+|.+..-+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4568999999999999999999999999999999987655
No 324
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.53 E-value=55 Score=31.54 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=34.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhh
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF 50 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (433)
.+.+||++.-.|+- ...=...+.++|.++|++|.++.++.-...+
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 35678888877766 4446899999999999999999998554433
No 325
>PRK06849 hypothetical protein; Provisional
Probab=40.48 E-value=58 Score=31.22 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
.+++|++.- |...-.+.+|+.|.++||+|.++....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 356787774 223358999999999999999997764
No 326
>PRK07206 hypothetical protein; Provisional
Probab=40.32 E-value=1.2e+02 Score=29.22 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
++|+++-.... -..++++++++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 47888875433 3468999999999999888663
No 327
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=40.26 E-value=2.3e+02 Score=25.92 Aligned_cols=20 Identities=10% Similarity=0.390 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHhCCCCCcEEEE
Q 013951 102 MLQQPFENLFKEKTLKPCCIIS 123 (433)
Q Consensus 102 ~~~~~l~~~l~~~~~~pD~vI~ 123 (433)
.....+.+++++ .+||+||+
T Consensus 110 e~~~~l~~~Ir~--~~PdvViT 129 (284)
T TIGR03445 110 EAAGALVAVIRE--VRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHH--hCCcEEEe
Confidence 355788889999 99999996
No 328
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=40.00 E-value=47 Score=32.41 Aligned_cols=35 Identities=9% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
++.+.+++ .+||++|.+.+ ...+|+++|+|++.++
T Consensus 361 e~~~~i~~--~~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIAR--TEPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHh--hCCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 35556666 79999999974 4567899999998864
No 329
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.64 E-value=49 Score=33.13 Aligned_cols=36 Identities=8% Similarity=0.299 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 145 (433)
.++.+.+++ .+||+||.+.+ ...+|+++|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 344666777 79999999974 4667899999998864
No 330
>PRK03094 hypothetical protein; Provisional
Probab=39.61 E-value=29 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q 013951 24 MFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+..|.++|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 557899999999999877654
No 331
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.44 E-value=26 Score=31.59 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCCceeeecccchhhHHHHHH------cCCcEEeccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGIS------AGVQMLTWPL 387 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~------~GvP~v~~P~ 387 (433)
.+++ +|+-||-||++.|+. .++|++.+-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 3455 999999999999976 5899998775
No 332
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=39.41 E-value=2.6e+02 Score=24.47 Aligned_cols=46 Identities=15% Similarity=-0.063 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHH
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTV 53 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (433)
.-+++.-.|+.|.-.-.+.++.+-.++|..+.+++.+...+.+.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~ 67 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRN 67 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHH
Confidence 3466777788888888888887766889999999988766555443
No 333
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.41 E-value=1.4e+02 Score=27.53 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
++||+|+-.|.. ....-++|.+.||+|.-+.+...+
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCC
Confidence 358888877754 355567777789999988877554
No 334
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.15 E-value=85 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCcEEEECC-C-CcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDM-C-FPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~-~-~~~~~~~A~~~giP~v~~ 144 (433)
.+.+.+++ .++|.|++=. - ...+..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 66666666 7899999433 2 237888999999999985
No 335
>PRK04328 hypothetical protein; Provisional
Probab=39.11 E-value=2.8e+02 Score=24.63 Aligned_cols=45 Identities=16% Similarity=-0.044 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTV 53 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (433)
-+++.-.|+.|--.-.+.++.+-.++|+.+.+++.+...+.+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 456666678888887888887777889999999988766655443
No 336
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=39.08 E-value=2.6e+02 Score=24.37 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=26.3
Q ss_pred HHHHhCCCCCcEEEECCCCcc---hHHHHHHcCCCcEE
Q 013951 109 NLFKEKTLKPCCIISDMCFPW---TVDTAAKFNVPRII 143 (433)
Q Consensus 109 ~~l~~~~~~pD~vI~D~~~~~---~~~~A~~~giP~v~ 143 (433)
+.+++ .+.|+|+-|.+.+. -..+++..|+|++.
T Consensus 172 ~~L~~--~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 172 RELAE--QGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HHHHh--cCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 44555 79999999998873 36788889999876
No 337
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.02 E-value=53 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCcc--hHHHHHHcCCCcEEEe
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFPW--TVDTAAKFNVPRIIFH 145 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~ 145 (433)
..++++++ .+||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~---l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA---LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc---cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 45566655 69999998654432 4445578999998864
No 338
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=39.02 E-value=2.3e+02 Score=28.52 Aligned_cols=29 Identities=7% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCcEEEecc
Q 013951 116 LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 116 ~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (433)
.+.++||.|.. +...|+++|++.|.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 69999999974 578999999999998764
No 339
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=38.96 E-value=3.2e+02 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+||+|+-.+. -.+...+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 4788874333 3567788888889998877654
No 340
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=38.96 E-value=1.7e+02 Score=26.07 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCcEEEECCCCc-----chHHHHHHcCCCcEEE
Q 013951 104 QQPFENLFKEKTLKPCCIISDMCFP-----WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 104 ~~~l~~~l~~~~~~pD~vI~D~~~~-----~~~~~A~~~giP~v~~ 144 (433)
.+.-..++++ ++.|+||+-.--- .=..+|+++|||+|.+
T Consensus 185 ~~~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 185 EEDNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred hHHHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 3444567788 9999999875433 2378999999999997
No 341
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.85 E-value=1.4e+02 Score=23.97 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.4
Q ss_pred eecccch------hhHHHHHHcCCcEEeccc
Q 013951 363 FLTHCGW------NSSLEGISAGVQMLTWPL 387 (433)
Q Consensus 363 ~ItHGG~------gs~~eal~~GvP~v~~P~ 387 (433)
+++|+|. +.+.+|...++|+|++.-
T Consensus 63 ~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 63 VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 8888664 467789999999999964
No 342
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.80 E-value=63 Score=31.04 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEECCCCcch----------HHHHHHcCCCcEE
Q 013951 101 HMLQQPFENLFKEKTLKPCCIISDMCFPWT----------VDTAAKFNVPRII 143 (433)
Q Consensus 101 ~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~----------~~~A~~~giP~v~ 143 (433)
+.....+.+.+++ .+||++|+-+.+-++ ..+.++++||.+.
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01918 62 EEAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVT 112 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
Confidence 4455777888888 999999999876522 2245679999887
No 343
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.73 E-value=94 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHH
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTV 53 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (433)
+.+-++++ |+.|-+- .++|+.|++|||+|.++. ...+++.+.
T Consensus 5 ~~~~~lIT-GASsGIG--~~~A~~lA~~g~~liLva--R~~~kL~~l 46 (265)
T COG0300 5 KGKTALIT-GASSGIG--AELAKQLARRGYNLILVA--RREDKLEAL 46 (265)
T ss_pred CCcEEEEE-CCCchHH--HHHHHHHHHCCCEEEEEe--CcHHHHHHH
Confidence 34566666 4444443 689999999999999998 444444443
No 344
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.68 E-value=63 Score=31.04 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHhCCCCCcEEEECCCCcch----------HHHHHHcCCCcEE
Q 013951 101 HMLQQPFENLFKEKTLKPCCIISDMCFPWT----------VDTAAKFNVPRII 143 (433)
Q Consensus 101 ~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~----------~~~A~~~giP~v~ 143 (433)
+.....+.+.+++ .+||++|+-+.+-++ ..+.++++||.+.
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 62 EEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
Confidence 4455777888888 999999999876522 2245679999887
No 345
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.25 E-value=50 Score=33.06 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHG 146 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 146 (433)
++.+.+++ .+||+||.+. ....+|+++|||++.++.
T Consensus 355 ei~~~i~~--~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHh--cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 55566677 7999999996 457789999999988643
No 346
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=38.22 E-value=43 Score=22.81 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCEEEEEECC
Q 013951 25 FDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 25 l~La~~L~~rGH~Vt~~~~~ 44 (433)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56789999999999999655
No 347
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.03 E-value=2.3e+02 Score=23.44 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCcEEEECCCCcchHHHHHHcCCCc-EEEecchHHHHHHHhhhhccccCCCCCCCCCcccCCCCCCCccccccccCccCC
Q 013951 117 KPCCIISDMCFPWTVDTAAKFNVPR-IIFHGFSCFCLFCHHLLGVSKVHENVTSDSEYFNIPGLPDHIEFTKVQLLISKR 195 (433)
Q Consensus 117 ~pD~vI~D~~~~~~~~~A~~~giP~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~ 195 (433)
+.|+++.|.... ..+++.+|.|. -.++..
T Consensus 5 ~adlv~~DG~~i--~~~~~~~g~~~~~rv~g~------------------------------------------------ 34 (172)
T PF03808_consen 5 SADLVLPDGMPI--VWAARLLGRPLPERVTGS------------------------------------------------ 34 (172)
T ss_pred hCCEEecCCHHH--HHHHHHcCCCCCcccCHH------------------------------------------------
Q ss_pred CCcHHHHHHHHHHhcccc--cEEEEcChhhcchHHHHHHHhhcCCcEEEeCcCCCCCCCCccccccCCCCCCCchhhhhh
Q 013951 196 DDDRKELREQILAADKKT--YGAIINTFEELESPFIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTW 273 (433)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (433)
+++..+.+..... ...++-+.++.-......+.+.+ |.+..+|-...+-... ..+++.+.
T Consensus 35 -----dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~~------------~~~~i~~~ 96 (172)
T PF03808_consen 35 -----DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDEE------------EEEAIINR 96 (172)
T ss_pred -----HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCChh------------hHHHHHHH
Q ss_pred hccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHh-CCCCEEEEEeC
Q 013951 274 LDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEA-SNKPFVWVIRG 318 (433)
Q Consensus 274 l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~ 318 (433)
+....++ +|+|++|+-.+ +..+..... .+..++..+|+
T Consensus 97 I~~~~pd-iv~vglG~PkQ------E~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 97 INASGPD-IVFVGLGAPKQ------ERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred HHHcCCC-EEEEECCCCHH------HHHHHHHHHHCCCCEEEEECc
No 348
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=37.96 E-value=1.6e+02 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=20.9
Q ss_pred HHHHHHHHHH---CCCEEEEEECCcchhhhHH
Q 013951 24 MFDIARLLAQ---HGAIVTIVTTPVNAARFKT 52 (433)
Q Consensus 24 ~l~La~~L~~---rGH~Vt~~~~~~~~~~~~~ 52 (433)
.-.|++++.+ .+.+|.++++|.....+++
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~ 43 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK 43 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh
Confidence 3467777776 4778999999966555554
No 349
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.96 E-value=3.2e+02 Score=25.04 Aligned_cols=103 Identities=8% Similarity=0.063 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
.++||+++.++..+.+ .+|.++..+. ..+|.++.+. +..+.+...+. ++.+..++.. +.
T Consensus 92 ~~~kiavl~Sg~g~nl---~al~~~~~~~~l~~~i~~visn--~~~~~~~A~~~-----gIp~~~~~~~------~~--- 152 (289)
T PRK13010 92 QRPKVVIMVSKFDHCL---NDLLYRWRMGELDMDIVGIISN--HPDLQPLAVQH-----DIPFHHLPVT------PD--- 152 (289)
T ss_pred CCeEEEEEEeCCCccH---HHHHHHHHCCCCCcEEEEEEEC--ChhHHHHHHHc-----CCCEEEeCCC------cc---
Confidence 4678999886664443 4555555544 3566666543 22233333333 6777665421 10
Q ss_pred CCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCc-chHHHHHHcCCCcEEE
Q 013951 84 NCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFP-WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~ 144 (433)
+.. .....+.+.+++ .++|++|.=.|.. -...+-+.+.-.++-+
T Consensus 153 ~~~---------------~~~~~~~~~l~~--~~~Dlivlagym~il~~~~l~~~~~~iiNi 197 (289)
T PRK13010 153 TKA---------------QQEAQILDLIET--SGAELVVLARYMQVLSDDLSRKLSGRAINI 197 (289)
T ss_pred ccc---------------chHHHHHHHHHH--hCCCEEEEehhhhhCCHHHHhhccCCceee
Confidence 000 123356777888 8999998765443 4455555555555544
No 350
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.64 E-value=56 Score=29.38 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=24.4
Q ss_pred eEEEEeeCCCcCCChh-hHHHHHHHHHh--CCCCEEEEEeCC
Q 013951 281 SVVYVCLGSICNLPSS-QLIELGLGLEA--SNKPFVWVIRGV 319 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~ 319 (433)
.+++|||||...-..+ .+..+.+.+++ .+..+-|++.++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4788999998775544 67777777766 467888887664
No 351
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=37.62 E-value=84 Score=26.37 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
++||++--.|+.|=+. -++|-+.|.+.|+++.++.+.....
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a~~ 42 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAAKK 42 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHHHH
Confidence 4578888778888666 7889999999999999999885443
No 352
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.52 E-value=3.2e+02 Score=26.25 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHH
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKT 52 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (433)
+.-|+|+-.-+.|...-|-.||..++++|+.+-+++....+...-+
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD 146 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD 146 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH
Confidence 4457777777889999999999999999999999998877654333
No 353
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=37.38 E-value=1.8e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=19.9
Q ss_pred eecccchh------hHHHHHHcCCcEEeccc
Q 013951 363 FLTHCGWN------SSLEGISAGVQMLTWPL 387 (433)
Q Consensus 363 ~ItHGG~g------s~~eal~~GvP~v~~P~ 387 (433)
+++++|-| .+.+|...++|+|++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 77776644 67789999999999963
No 354
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=37.21 E-value=4.2e+02 Score=26.13 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++.+.+++...+||++|.... ...+|+++|||++.+
T Consensus 370 e~~~~i~~~~~~~dliig~s~---~~~~A~~~gip~~~~ 405 (454)
T cd01973 370 ELEKRIKNKGLELDLILGHSK---GRYIAIDNNIPMVRV 405 (454)
T ss_pred HHHHHHHhcCCCCCEEEECCc---cHHHHHHcCCCEEEe
Confidence 555666652236999998864 588999999999875
No 355
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=37.19 E-value=2.7e+02 Score=27.43 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCcEEEECCCCcchHHHHHHcCCCcEEE
Q 013951 117 KPCCIISDMCFPWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 117 ~pD~vI~D~~~~~~~~~A~~~giP~v~~ 144 (433)
++|++|.+.. ...+|+++|||++.+
T Consensus 371 ~~dliig~s~---~~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNSH---GRQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 7999999964 578999999999875
No 356
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.81 E-value=2e+02 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=31.6
Q ss_pred hhhhhhccCCCCeEEEEeeCCCcCC-ChhhHHHHHHHHHhCCCCE-EEEEe
Q 013951 269 ECLTWLDSQQPSSVVYVCLGSICNL-PSSQLIELGLGLEASNKPF-VWVIR 317 (433)
Q Consensus 269 ~l~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~-i~~~~ 317 (433)
+..+|+..+. +++|.|-.... +.+.+..+++.+.+.+.-- +++++
T Consensus 35 d~~~~l~~gE----lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~ 81 (123)
T PF07905_consen 35 DPSDWLRGGE----LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTG 81 (123)
T ss_pred CHHHhCCCCe----EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5667886653 66777776665 5667888999999988754 44454
No 357
>PRK12939 short chain dehydrogenase; Provisional
Probab=36.80 E-value=2.4e+02 Score=24.50 Aligned_cols=39 Identities=31% Similarity=0.215 Sum_probs=25.2
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
|...++.+++ +++ ++.|.+ -..||+.|.++||+|.++..
T Consensus 1 ~~~~~~~~~v-lIt-Ga~g~i--G~~la~~l~~~G~~v~~~~r 39 (250)
T PRK12939 1 MASNLAGKRA-LVT-GAARGL--GAAFAEALAEAGATVAFNDG 39 (250)
T ss_pred CCCCCCCCEE-EEe-CCCChH--HHHHHHHHHHcCCEEEEEeC
Confidence 3343434444 444 445544 47889999999999988753
No 358
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=36.65 E-value=2.3e+02 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.++++ ++.|.+- ..+++.|.++|++|.++.-.
T Consensus 8 ~~vlIt-Gasg~iG--~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 8 KTAVVT-GAASGIG--KEIALELARAGAAVAIADLN 40 (262)
T ss_pred CEEEEE-CCCChHH--HHHHHHHHHCCCeEEEEeCC
Confidence 455555 5666554 57899999999999877644
No 359
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.44 E-value=45 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|.+.-.|+.|.......||++|.+++|+|..++..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 55566789999999999999999999999877754
No 360
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.39 E-value=42 Score=30.60 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=46.9
Q ss_pred eCcccHhhhhcCCCceeeecccchhhHHH-HHHcCCcEEecccccccchhHHHhh--hhccceEEeeeeccCCcccccch
Q 013951 346 RGWAPQVLILSHPAVGGFLTHCGWNSSLE-GISAGVQMLTWPLFADQFCNEKLIV--NVLRIGVSVGVEVDLPITTSNYL 422 (433)
Q Consensus 346 ~~~~pq~~lL~~~~~~~~ItHGG~gs~~e-al~~GvP~v~~P~~~DQ~~na~~v~--e~~G~G~~l~~~~~~~~~l~~ai 422 (433)
..|-...++|-++++ .|-- .||..| ++=-|+|+|.+|-.+-|+.-.-... .-+|+.+.+-.. ..+..+.+
T Consensus 300 lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~---~aq~a~~~ 372 (412)
T COG4370 300 LSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP---EAQAAAQA 372 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---chhhHHHH
Confidence 344455566665555 4433 346665 6788999999999999986543322 245777665432 22333333
Q ss_pred -hhccccccc
Q 013951 423 -CKISCNSQA 431 (433)
Q Consensus 423 -~~il~~~~~ 431 (433)
.++|.|++.
T Consensus 373 ~q~ll~dp~r 382 (412)
T COG4370 373 VQELLGDPQR 382 (412)
T ss_pred HHHHhcChHH
Confidence 347777653
No 361
>PRK09739 hypothetical protein; Provisional
Probab=36.24 E-value=1e+02 Score=26.31 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCCh---HHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGHL---IPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~---~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+++||+++....+.+- .-.-.+++.|.++||+|+++--.
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 3457777654333331 12445566677789999977533
No 362
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=36.24 E-value=31 Score=30.68 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.8
Q ss_pred CCceeeecccchhhHHHHHHc----CCcEEeccc
Q 013951 358 PAVGGFLTHCGWNSSLEGISA----GVQMLTWPL 387 (433)
Q Consensus 358 ~~~~~~ItHGG~gs~~eal~~----GvP~v~~P~ 387 (433)
+++ +|+-||=||++.|+.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 9999999999988654 789998764
No 363
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.68 E-value=1.1e+02 Score=22.61 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.+||+++|..+.|--.-...+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 356899999887774444555666667789988777665
No 364
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.49 E-value=46 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 15 YLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 15 ~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+|+.|++- ..|+++|.++||+|+.++-.
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESS
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 36666664 56899999999999999955
No 365
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.47 E-value=2.7e+02 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=21.0
Q ss_pred CCChHH-HHHHHHHHHHCCCEEEEEECCcch
Q 013951 18 PGHLIP-MFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 18 ~GH~~P-~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
+|=+-- .-.|+..|+++||+|++.+.....
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 344433 456778888889999999876443
No 366
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=35.46 E-value=54 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=27.4
Q ss_pred ccHhhhhcCCCceeeecccchhhHHH---HHHcCCcEEeccc
Q 013951 349 APQVLILSHPAVGGFLTHCGWNSSLE---GISAGVQMLTWPL 387 (433)
Q Consensus 349 ~pq~~lL~~~~~~~~ItHGG~gs~~e---al~~GvP~v~~P~ 387 (433)
.+...++...+-..++-=||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44555555433345666789998765 6889999999985
No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=35.38 E-value=2.5e+02 Score=23.04 Aligned_cols=99 Identities=10% Similarity=-0.076 Sum_probs=57.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE---ECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIV---TTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENC 85 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (433)
-|.+++.++.|-....+.+|-....+|+.|.++ -....... ....... .++.+..... ......
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE-~~~l~~l----~~v~~~~~g~-------~~~~~~- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGE-LKALERL----PNIEIHRMGR-------GFFWTT- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCH-HHHHHhC----CCcEEEECCC-------CCccCC-
Confidence 577888899999999999999999999999994 44211111 1122221 2466655421 111111
Q ss_pred CCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC
Q 013951 86 DLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF 127 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~ 127 (433)
.+...-............+.+++ .++|++|-|-+.
T Consensus 71 -----~~~~~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~ 105 (159)
T cd00561 71 -----ENDEEDIAAAAEGWAFAKEAIAS--GEYDLVILDEIN 105 (159)
T ss_pred -----CChHHHHHHHHHHHHHHHHHHhc--CCCCEEEEechH
Confidence 01112222233344455666666 899999999765
No 368
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=35.22 E-value=5.2 Score=20.82 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=13.6
Q ss_pred chhhHHHHHHcCCcEEe
Q 013951 368 GWNSSLEGISAGVQMLT 384 (433)
Q Consensus 368 G~gs~~eal~~GvP~v~ 384 (433)
|.|+++-.+..|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 68899999999888765
No 369
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=35.19 E-value=83 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=28.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
++++..+..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35666677778888999999999999999888655
No 370
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=35.19 E-value=1e+02 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCceeeecccchh------hHHHHHHcCCcEEecc
Q 013951 358 PAVGGFLTHCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 358 ~~~~~~ItHGG~g------s~~eal~~GvP~v~~P 386 (433)
+.+ +++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVA--VVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEE--EEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 444 88888855 6779999999999993
No 371
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=35.10 E-value=75 Score=28.08 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCcEEEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 5 ASQVHFLLL-PYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 5 ~~~~~il~~-~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+..++|+++ +.|. -=..-+-.....|.++||+|++++..
T Consensus 8 ~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 8 LDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 345565555 4442 22344666777789999999999754
No 372
>PRK11519 tyrosine kinase; Provisional
Probab=35.02 E-value=1.1e+02 Score=32.11 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=31.4
Q ss_pred CcEEEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 7 QVHFLLLPY--LAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 7 ~~~il~~~~--~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
+.|++++++ |+-|--.-...||..|+..|++|.++-....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 445666555 5678888899999999999999999976543
No 373
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.96 E-value=1.7e+02 Score=24.20 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=20.6
Q ss_pred eeecccch------hhHHHHHHcCCcEEecccc
Q 013951 362 GFLTHCGW------NSSLEGISAGVQMLTWPLF 388 (433)
Q Consensus 362 ~~ItHGG~------gs~~eal~~GvP~v~~P~~ 388 (433)
++++|.|. +++.+|...++|+|++.-.
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 38888874 4777899999999999753
No 374
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=34.61 E-value=51 Score=25.03 Aligned_cols=39 Identities=5% Similarity=-0.137 Sum_probs=27.3
Q ss_pred hhhcCCCceeeeccc---chhhHHH---HHHcCCcEEeccccccc
Q 013951 353 LILSHPAVGGFLTHC---GWNSSLE---GISAGVQMLTWPLFADQ 391 (433)
Q Consensus 353 ~lL~~~~~~~~ItHG---G~gs~~e---al~~GvP~v~~P~~~DQ 391 (433)
..+..|++-+++-.| +.||..| |...|+|++++---..+
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 345566665566666 8999999 68899999998654433
No 375
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=34.34 E-value=2.3e+02 Score=22.76 Aligned_cols=121 Identities=16% Similarity=0.073 Sum_probs=62.3
Q ss_pred EeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeee
Q 013951 285 VCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFL 364 (433)
Q Consensus 285 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I 364 (433)
++.++...+.-..=..+-.+++..+.+++..+|+....-. +.+-.......-++.+. ++
T Consensus 22 ~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-----~~el~ta~~~~~~v~~v----------------v~ 80 (153)
T PF02775_consen 22 LTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-----LQELATAVRYGLPVVIV----------------VL 80 (153)
T ss_dssp EESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-----GGGHHHHHHTTSSEEEE----------------EE
T ss_pred EcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-----cchhHHHhhccceEEEE----------------EE
Confidence 3333333333333344444555567777777777542211 11101111112244443 88
Q ss_pred cccchhhHHHHHH-cCCcEEecc--cccccchhHHHhhhhccceEEeeeeccCCcccccchhhcccc
Q 013951 365 THCGWNSSLEGIS-AGVQMLTWP--LFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCN 428 (433)
Q Consensus 365 tHGG~gs~~eal~-~GvP~v~~P--~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~ 428 (433)
.++|++.+..... .+-....-+ ......+.+..+ +..|+- ....+..+.+.+.+++++.++.
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a-~a~G~~-~~~v~~~~~~el~~al~~a~~~ 145 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALA-EAFGIK-GARVTTPDPEELEEALREALES 145 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHH-HHTTSE-EEEESCHSHHHHHHHHHHHHHS
T ss_pred eCCcceEeccccccCcCcccccccccccccCCHHHHH-HHcCCc-EEEEccCCHHHHHHHHHHHHhC
Confidence 8888887765421 121111111 124466778888 577776 3444455668999999988743
No 376
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.05 E-value=1.1e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
||++.--++.|-......+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999998775
No 377
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=33.95 E-value=95 Score=24.90 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=29.5
Q ss_pred CeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeC
Q 013951 280 SSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRG 318 (433)
Q Consensus 280 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 318 (433)
..+|++++||--....+.++++++.+. .+.++++....
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 458999999988877888899988885 35677776544
No 378
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=33.84 E-value=71 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
=||++++ +..++-. ..++|+.|.+.|..+..++
T Consensus 83 DRVllfs-~~~~~~e-~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 83 DRVLLFS-PFSTDEE-AVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -EEEEEE-S-S--HH-HHHHHHHHHHHT--EEEEE
T ss_pred ceEEEEe-CCCCCHH-HHHHHHHHHHCCCCEEEEE
Confidence 3788877 5555543 7899999999999999999
No 379
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.72 E-value=2.3e+02 Score=24.97 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|.++++ ++.|.+- ..+|+.|.++|++|.++...
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 566666 5556555 78999999999999988755
No 380
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.70 E-value=91 Score=28.59 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=33.3
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|.+++. +.|.|.-=|+-|--.-...||..|+++|++|.++=..
T Consensus 1 ~~~~~~-~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 1 MTDENI-RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCCcCc-eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 555543 4455655567889999999999999999999999444
No 381
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.50 E-value=63 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=28.1
Q ss_pred CCCCcEEEECCCCc----------chHHHHHHcCCCcEEEecchHHH
Q 013951 115 TLKPCCIISDMCFP----------WTVDTAAKFNVPRIIFHGFSCFC 151 (433)
Q Consensus 115 ~~~pD~vI~D~~~~----------~~~~~A~~~giP~v~~~~~~~~~ 151 (433)
+..||+|++....- -+..+|+++|||+.-.+.+....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 67999999876542 46789999999998876655443
No 382
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=33.30 E-value=2e+02 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~ 44 (433)
+|||++-.+++.|. |++.|++. |++|.++-..
T Consensus 1 mkVLviG~Ggreha-----l~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREHA-----LAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHHH-----HHHHHHhCCCCCEEEEEECC
Confidence 48999888888774 67778776 8998888543
No 383
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.14 E-value=82 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
||.++ +.||+- +.+|..|+++||+|+.+=..
T Consensus 2 ~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 55555 566664 78899999999999998654
No 384
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=33.13 E-value=1e+02 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhCCCCCcEEEECCCC--cchHHHHHHcCCCcEEEe
Q 013951 103 LQQPFENLFKEKTLKPCCIISDMCF--PWTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 103 ~~~~l~~~l~~~~~~pD~vI~D~~~--~~~~~~A~~~giP~v~~~ 145 (433)
+...+.+.+++ .++|+|++=..- +.+..+|..+|+|++.+.
T Consensus 38 i~~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 38 IGKEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 34455555556 789999954322 377889999999999863
No 385
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.01 E-value=4.1e+02 Score=24.79 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=31.6
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 8 VHFLLLPY-LAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 8 ~~il~~~~-~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
.||+|++. |+-|--.-..++|-.|++.|+.|.++++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 36666664 466887778889999999999888888876654
No 386
>PRK08862 short chain dehydrogenase; Provisional
Probab=32.97 E-value=3.3e+02 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
+.++++..+ +.+ =.++|++|.++|++|.++.-
T Consensus 6 k~~lVtGas-~GI--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 6 SIILITSAG-SVL--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred eEEEEECCc-cHH--HHHHHHHHHHCCCEEEEEcC
Confidence 566666444 444 56899999999999988753
No 387
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.92 E-value=42 Score=23.89 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCEEEEEECCc
Q 013951 24 MFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+-.+.++|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678999999999999888663
No 388
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.70 E-value=68 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhH
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFK 51 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (433)
.+||++.-.++-+=. =...|+++|.++||+|.++.++.-...+.
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 467888776654433 58999999999999999999995544333
No 389
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=32.67 E-value=69 Score=26.20 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.++|+++=.+.- ....++.|.+.||+|+++.+.
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 3567777754432 478899999999999999755
No 390
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.66 E-value=58 Score=24.48 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchhhhH
Q 013951 22 IPMFDIARLLAQHGAIVTIVTTPVNAARFK 51 (433)
Q Consensus 22 ~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (433)
.|.+.|+++|.++|.+|.+.=+-.......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHH
Confidence 789999999999999998887775544433
No 391
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.59 E-value=57 Score=30.20 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.+||+++=.|+.| ..+|..|.++||+|+++.-.
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 4689999777776 34678899999999999865
No 392
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=32.37 E-value=4.2e+02 Score=24.74 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCC---Ch--HHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCC
Q 013951 8 VHFLLLPYLAPG---HL--IPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGC 82 (433)
Q Consensus 8 ~~il~~~~~~~G---H~--~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (433)
.-|+|.|..+.| ++ .-+.+|++.|.++|++|.++..+...+..++..+.. +-.. ....
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~-----~~~~------------~~~~ 243 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL-----NTEQ------------QAWC 243 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc-----cccc------------ccce
Confidence 457777744322 22 247899999998899999988776554433322110 0000 0000
Q ss_pred CCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEec
Q 013951 83 ENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHG 146 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 146 (433)
..... .. -..++..++ .+-|++|+- .++...+|..+|+|+|.++.
T Consensus 244 ~~l~g--~~-----------sL~el~ali----~~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 244 RNLAG--ET-----------QLEQAVILI----AACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred eeccC--CC-----------CHHHHHHHH----HhCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 00000 00 012344444 467888865 35779999999999999754
No 393
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.04 E-value=42 Score=30.89 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.8
Q ss_pred hcCCCceeeecccchhhHHHHHH----cCCcEEecccccccc
Q 013951 355 LSHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPLFADQF 392 (433)
Q Consensus 355 L~~~~~~~~ItHGG~gs~~eal~----~GvP~v~~P~~~DQ~ 392 (433)
|..-+++.+|.=||-||+.-|.. +++|+|++|-..|-.
T Consensus 87 l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDND 128 (301)
T TIGR02482 87 LKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDND 128 (301)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCC
Confidence 44557777999999999877643 799999999877643
No 394
>PRK07109 short chain dehydrogenase; Provisional
Probab=32.01 E-value=2.8e+02 Score=25.86 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
.++++++ ++.|-+ =..+|+.|.++|++|.++.-
T Consensus 8 ~k~vlIT-Gas~gI--G~~la~~la~~G~~Vvl~~R 40 (334)
T PRK07109 8 RQVVVIT-GASAGV--GRATARAFARRGAKVVLLAR 40 (334)
T ss_pred CCEEEEE-CCCCHH--HHHHHHHHHHCCCEEEEEEC
Confidence 3566666 444544 36789999999999988763
No 395
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.87 E-value=75 Score=22.16 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHCCCEEEEEECCc
Q 013951 23 PMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 23 P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
--+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 36889999999999999998654
No 396
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.73 E-value=1.1e+02 Score=31.40 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=21.3
Q ss_pred eeeecccch------hhHHHHHHcCCcEEecc
Q 013951 361 GGFLTHCGW------NSSLEGISAGVQMLTWP 386 (433)
Q Consensus 361 ~~~ItHGG~------gs~~eal~~GvP~v~~P 386 (433)
.++++|.|- +.+.+|...++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888874 47889999999999985
No 397
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.71 E-value=23 Score=29.62 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCCceeeecccchhhHHHHHHcCCcEEeccccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFA 389 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~~GvP~v~~P~~~ 389 (433)
+..++.+|++||......... ++|+|-++..+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 344444999999999998877 99999999864
No 398
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=31.68 E-value=2.6e+02 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.151 Sum_probs=23.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
+++++ ++.|++- ..+|+.|.++|++|+.+..
T Consensus 2 ~~lIt-G~sg~iG--~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGIG--TAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 45555 5567764 6779999999999988765
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.66 E-value=2e+02 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
+..|+|+-.++-|-..-...||..|+++|+.|.++....++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 445777777788999999999999999999999999886543
No 400
>PLN02583 cinnamoyl-CoA reductase
Probab=31.64 E-value=2.3e+02 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
+.++++ |+.|-+- ..|+++|.++||+|+.+.-
T Consensus 7 k~vlVT-GatG~IG--~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 7 KSVCVM-DASGYVG--FWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred CEEEEE-CCCCHHH--HHHHHHHHhCCCEEEEEEc
Confidence 344555 5556553 5788999999999998764
No 401
>PRK04940 hypothetical protein; Provisional
Probab=31.45 E-value=1.2e+02 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.2
Q ss_pred CCcEEEECCCCc-chHHHHHHcCCCcEEEecch
Q 013951 117 KPCCIISDMCFP-WTVDTAAKFNVPRIIFHGFS 148 (433)
Q Consensus 117 ~pD~vI~D~~~~-~~~~~A~~~giP~v~~~~~~ 148 (433)
+++++|-..+-- ++..+|+++|+|.|.++|..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 577888777664 88999999999999987653
No 402
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=31.39 E-value=61 Score=30.52 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=26.8
Q ss_pred cCCCCCChHHHHHHHHHHHH-CCCEEEEEECC
Q 013951 14 PYLAPGHLIPMFDIARLLAQ-HGAIVTIVTTP 44 (433)
Q Consensus 14 ~~~~~GH~~P~l~La~~L~~-rGH~Vt~~~~~ 44 (433)
-.-=+|+|--+.+||+.|++ +||+|++.+-.
T Consensus 7 VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 7 VVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred eecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 34468999999999999997 69999999865
No 403
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.38 E-value=1.4e+02 Score=25.64 Aligned_cols=39 Identities=21% Similarity=-0.005 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
..||++++.++- .=-=-+..|++|..+|++|+++.....
T Consensus 49 ~~~v~vlcG~Gn-NGGDG~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGN-NGGDGLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCC-ccHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 467999996543 222256889999999999999985533
No 404
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=31.27 E-value=1e+02 Score=28.57 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=52.3
Q ss_pred CCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCceeeecccchhh
Q 013951 292 NLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNS 371 (433)
Q Consensus 292 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ItHGG~gs 371 (433)
..+.+..+.+.+++.+.+.+.||.+.++... ..+.++++...+-.+|.. ||-..-..+
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~--------------------~rlL~~lD~~~i~~~PK~--fiGySDiTa 106 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDDS--------------------NELLPYLDYELIKKNPKI--FIGYSDITA 106 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccCH--------------------hhhhhhcCHHHHhhCCCE--EEeccHHHH
Confidence 3456678889999999999999998876432 133455666666666766 777777777
Q ss_pred HHHHHH--cCCcEEeccccc
Q 013951 372 SLEGIS--AGVQMLTWPLFA 389 (433)
Q Consensus 372 ~~eal~--~GvP~v~~P~~~ 389 (433)
++-+++ .|.+.+-=|...
T Consensus 107 L~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 107 LHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHHHHHhcCCeEEECcccc
Confidence 776663 367666666543
No 405
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.25 E-value=79 Score=25.27 Aligned_cols=20 Identities=40% Similarity=0.288 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCEEEEEECCc
Q 013951 26 DIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 26 ~La~~L~~rGH~Vt~~~~~~ 45 (433)
-+|..|+++||+|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 46889999999999999875
No 406
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=31.24 E-value=3.1e+02 Score=22.79 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccHHHHHHHHH
Q 013951 22 IPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFMKSLH 101 (433)
Q Consensus 22 ~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
--+.+-..+|+.+|-.|++++. ....++....++. ++.|+.- +..
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSN-n~e~RV~~~~~~l-----~v~fi~~-----------------------------A~K 93 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSN-NKESRVARAAEKL-----GVPFIYR-----------------------------AKK 93 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeC-CCHHHHHhhhhhc-----CCceeec-----------------------------ccC
Confidence 3367788889999999998887 4455555444322 4555431 001
Q ss_pred HhHHHHHHHHHhCC--CCCcEEEECCCCcchHHHHHHcCCCcEEEecc
Q 013951 102 MLQQPFENLFKEKT--LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 102 ~~~~~l~~~l~~~~--~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (433)
.+...+++.+++.. .+--++|.|.++. -...+...|+-+|.+-|.
T Consensus 94 P~~~~fr~Al~~m~l~~~~vvmVGDqL~T-DVlggnr~G~~tIlV~Pl 140 (175)
T COG2179 94 PFGRAFRRALKEMNLPPEEVVMVGDQLFT-DVLGGNRAGMRTILVEPL 140 (175)
T ss_pred ccHHHHHHHHHHcCCChhHEEEEcchhhh-hhhcccccCcEEEEEEEe
Confidence 12334555555431 2344678888765 355788899999987544
No 407
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.24 E-value=3.2e+02 Score=24.34 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCc----chHHHHHHcCCCcEEE
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFP----WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~----~~~~~A~~~giP~v~~ 144 (433)
+.-.+++++ .+.|++|+=.--- .=..+|+++|||+|.+
T Consensus 184 e~n~al~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 184 ELNRALFRQ--YGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 344567788 9999999765432 2267899999999986
No 408
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=31.21 E-value=45 Score=30.57 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=23.9
Q ss_pred CCCceeeecccchhhHHHHHH----cCCcEEeccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPL 387 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~----~GvP~v~~P~ 387 (433)
.+++ +|+-||-||+++++. .++|++.+-.
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 4566 999999999999976 3789987764
No 409
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.04 E-value=72 Score=26.72 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.+..++++-.++.|--.=..++|+++.++|+.|.|++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345788888889998888999999999999999999866
No 410
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=31.02 E-value=3.3e+02 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=24.2
Q ss_pred CCCCcEEEE-CCCCc-chHHHHHHcCCCcEEEecc
Q 013951 115 TLKPCCIIS-DMCFP-WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 115 ~~~pD~vI~-D~~~~-~~~~~A~~~giP~v~~~~~ 147 (433)
...||+||. |+..- .+..=|.++|||+|.+.-+
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 368999874 44332 6778889999999997544
No 411
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.82 E-value=79 Score=28.99 Aligned_cols=39 Identities=8% Similarity=-0.102 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCC-ChH---HHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPG-HLI---PMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~G-H~~---P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.++||++++.+..- |-. -...+.++|.++||+|.++...
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 34588888844332 322 4588999999999999999654
No 412
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.81 E-value=2.3e+02 Score=23.04 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCcEEEEEcCC-------CCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 6 SQVHFLLLPYL-------APGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 6 ~~~~il~~~~~-------~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
+.+||+++..| +..|+--.+.++.+++++|.+=.++.+-++
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND 83 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND 83 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence 35688877766 457999999999999999998666555443
No 413
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=30.75 E-value=2.8e+02 Score=24.11 Aligned_cols=39 Identities=23% Similarity=0.104 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhCCCCCcEEEECC--CCcchHHHHHHcCCCcEE
Q 013951 103 LQQPFENLFKEKTLKPCCIISDM--CFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 103 ~~~~l~~~l~~~~~~pD~vI~D~--~~~~~~~~A~~~giP~v~ 143 (433)
+.....+.+++ .+.|+|+-.. +...+-.+.+.+|||+|=
T Consensus 162 l~~~~~~a~~e--dgAeaIiLGCAGms~la~~Lq~~~gvPVID 202 (230)
T COG4126 162 LVIEAAEALKE--DGAEAIILGCAGMSDLADQLQKAFGVPVID 202 (230)
T ss_pred HHHHHHHHhhh--cCCCEEEEcCccHHHHHHHHHHHhCCCccc
Confidence 44566777788 8999999765 334567788889999764
No 414
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.55 E-value=96 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 5 ASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 5 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
.+.++++ ++ ++.|.+ -..+++.|.++||+|+.+.-
T Consensus 9 ~~~~~vl-It-Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVL-VT-GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEE-Ee-CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 3444544 44 555766 47889999999999887764
No 415
>PLN00016 RNA-binding protein; Provisional
Probab=30.50 E-value=69 Score=30.53 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=25.2
Q ss_pred CcEEEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPY--LAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~--~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+++|+++.. |+.|.+ =..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 356777622 344444 356889999999999999854
No 416
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=30.33 E-value=1.9e+02 Score=24.98 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhhHHHHH
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARFKTVIA 55 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~ 55 (433)
-+++.-.|+.|--.-.+.++.+-+++ |..|.+++.+...+.+.+...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 46777778889999899988888788 999999999877665555443
No 417
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=30.23 E-value=4.8e+02 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=23.6
Q ss_pred EEEEcCC---CCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 10 FLLLPYL---APGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 10 il~~~~~---~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
|+-.|.. +.+..--.+.+.+.+.++|..+.+++.+.
T Consensus 163 ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~Et 201 (356)
T PRK08334 163 VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDET 201 (356)
T ss_pred EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCC
Confidence 5555533 22344557777788888899888777653
No 418
>PRK04946 hypothetical protein; Provisional
Probab=30.16 E-value=33 Score=28.80 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccH-hhhhcCCCceeeecccchhhH
Q 013951 298 LIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQ-VLILSHPAVGGFLTHCGWNSS 372 (433)
Q Consensus 298 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ItHGG~gs~ 372 (433)
+..++......+.+.+.++-+... +.++. .+..|+.| ..|++.++. =-.|||.|.+
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG~-gvLk~----------------~V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHGK-HILKQ----------------QTPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCH-hHHHH----------------HHHHHHcCCchhheeecc--CcccCCceEE
Confidence 334455555567776666555432 23322 23467765 457777776 7789998865
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.83 E-value=1.3e+02 Score=21.16 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
+++...++.|--.-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455556678888889999999999999998876
No 420
>PRK13057 putative lipid kinase; Reviewed
Probab=29.79 E-value=94 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCceeeecccchhhHHHHH----HcCCcEEeccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGI----SAGVQMLTWPL 387 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal----~~GvP~v~~P~ 387 (433)
..++ +|--||=||+.|++ ..++|+-++|.
T Consensus 50 ~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 50 GVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred CCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 3455 99999999999874 35789999996
No 421
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.74 E-value=70 Score=29.24 Aligned_cols=30 Identities=33% Similarity=0.210 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
||+++=.|..| ..+|..|.+.||+|+++..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 57777666555 5678889999999999986
No 422
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=29.72 E-value=1.2e+02 Score=27.85 Aligned_cols=50 Identities=22% Similarity=0.144 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCChH--------HHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHH
Q 013951 7 QVHFLLLPYLAPGHLI--------PMFDIARLLAQHGAIVTIVTTPVNAARFKTVIAR 56 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~--------P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~ 56 (433)
..+|++++..-..|.. -...||+.|.+.|-+|+++|.+.+...+++....
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~ 97 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRA 97 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHH
Confidence 4567777644432332 2789999999999999999999877777766543
No 423
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.62 E-value=6.6e+02 Score=26.14 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCcEEEECCCCc-chHHHHHHcCCCcEEEecc
Q 013951 106 PFENLFKEKTLKPCCIISDMCFP-WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~~~ 147 (433)
...+.+++ .+||++|+=.+.. -...+-......++-++++
T Consensus 66 ~~~~~l~~--~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRE--LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHh--cCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 34566777 8999999765432 3444555556667777665
No 424
>PLN02240 UDP-glucose 4-epimerase
Probab=29.59 E-value=93 Score=29.10 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
.++|++ + |+.|.+- ..|++.|.++||+|+.+.-
T Consensus 5 ~~~vlI-t-GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILV-T-GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEE-E-CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 345554 3 6777764 5678999999999999863
No 425
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.55 E-value=67 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
||+|+-.|..| ..+|..|.++||+|+++..
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 67777666665 4578889999999999986
No 426
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=29.48 E-value=4.7e+02 Score=25.90 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDL 87 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 87 (433)
+|||+.- .|-+ .+.+++.+.+.|+++..+.+..+.....-.. -=..+.++. ....+..
T Consensus 3 ~kvLi~~---~gei--a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~--------aD~~~~i~~--------~~~~~y~- 60 (472)
T PRK07178 3 KKILIAN---RGEI--AVRIVRACAEMGIRSVAIYSEADRHALHVKR--------ADEAYSIGA--------DPLAGYL- 60 (472)
T ss_pred cEEEEEC---CcHH--HHHHHHHHHHcCCeEEEEeCCCccCCccHhh--------CCEEEEcCC--------Cchhhhc-
Confidence 4777773 3333 6789999999999999998775432110000 012222220 0000000
Q ss_pred CCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECC-CCc---chHHHHHHcCCCcEE
Q 013951 88 LPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDM-CFP---WTVDTAAKFNVPRII 143 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~-~~~---~~~~~A~~~giP~v~ 143 (433)
-.+.+.++.++ .++|+|+.-. +.. ....+++++|+|++.
T Consensus 61 ---------------d~~~i~~~a~~--~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~ig 103 (472)
T PRK07178 61 ---------------NPRRLVNLAVE--TGCDALHPGYGFLSENAELAEICAERGIKFIG 103 (472)
T ss_pred ---------------CHHHHHHHHHH--HCCCEEEeCCCCcccCHHHHHHHHHcCCCccC
Confidence 02356667777 8999999754 111 234677888999764
No 427
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.41 E-value=2.6e+02 Score=28.65 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=35.5
Q ss_pred eecccchhhHHH--HHHcCCcEEecccccccchhHHHhhhhccce-EEeeeeccCCcccccchhhccc
Q 013951 363 FLTHCGWNSSLE--GISAGVQMLTWPLFADQFCNEKLIVNVLRIG-VSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 363 ~ItHGG~gs~~e--al~~GvP~v~~P~~~DQ~~na~~v~e~~G~G-~~l~~~~~~~~~l~~ai~~il~ 427 (433)
++.+||+|.+.. .+.+|-+....- +....+.++.+ |..|+- .++ -+.++|.+++.+.++
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~~-~~~~~d~~~la-~a~G~~~~~v----~~~~el~~al~~a~~ 531 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEVH-LGETPDFVKLA-ESYGVKADRV----EKPDEIKEALKEAIK 531 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCccccc-CCCCCCHHHHH-HHCCCeEEEE----CCHHHHHHHHHHHHh
Confidence 899999997653 344554432221 11246777777 677763 222 255778888877764
No 428
>PRK13059 putative lipid kinase; Reviewed
Probab=29.38 E-value=2.4e+02 Score=25.76 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.8
Q ss_pred eecccchhhHHHHH---H---cCCcEEeccc
Q 013951 363 FLTHCGWNSSLEGI---S---AGVQMLTWPL 387 (433)
Q Consensus 363 ~ItHGG~gs~~eal---~---~GvP~v~~P~ 387 (433)
+|.-||=||+.|++ + .++|+-++|.
T Consensus 60 vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 60 ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 99999999988863 3 3589999996
No 429
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=29.35 E-value=63 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.7
Q ss_pred CCCCCChHHHHHHHHHHHHC-CCEEEEEECC
Q 013951 15 YLAPGHLIPMFDIARLLAQH-GAIVTIVTTP 44 (433)
Q Consensus 15 ~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~ 44 (433)
.-=+|+|--+.+||+.|+++ |++|++.+-.
T Consensus 8 IDNfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 8 IDNFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred ccCCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 44589999999999999987 9999999865
No 430
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.23 E-value=1.2e+02 Score=26.34 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=25.4
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|+..+.. +.++++ ++.|.+ -..+++.|.++|++|.++.-.
T Consensus 1 ~~~~~~~-~~vlVt-G~sg~i--G~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 1 MAQSLQG-KNALIT-GAGRGI--GRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCccCCC-CEEEEE-cCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4433333 344555 444443 467889999999999888744
No 431
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=29.21 E-value=99 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
++||++. |+.|.+- ..|++.|.++||+|+.+.-
T Consensus 21 ~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 21 KLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 4677655 6667664 6789999999999999873
No 432
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.16 E-value=95 Score=23.96 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
..++++++.+.. +..++..+++|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 346777776666 355677788888778777776533
No 433
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=29.01 E-value=98 Score=28.88 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=32.8
Q ss_pred cEEEE--EcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLL--LPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~--~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
.-|.+ ++.++.|-.--...|++.|.++|++|.+++-.+
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34566 788999999999999999999999999998654
No 434
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.97 E-value=50 Score=30.17 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=24.0
Q ss_pred cCCCceeeecccchhhHHHHHH----cCCcEEeccc
Q 013951 356 SHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPL 387 (433)
Q Consensus 356 ~~~~~~~~ItHGG~gs~~eal~----~GvP~v~~P~ 387 (433)
..+++ +|+-||-||++.++. .++|++.+-.
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 34566 999999999998765 4789988764
No 435
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=28.95 E-value=1.4e+02 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
.+++++..+. =+-|++.++++|.++|++|+++......
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4788877443 4899999999999999999988765444
No 436
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.93 E-value=1.4e+02 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=27.9
Q ss_pred cEEEEEc--CCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLP--YLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~--~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
+|++.++ -++-|--.-...||..|+++|++|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3444444 3355677778999999999999999986553
No 437
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=2.1e+02 Score=24.99 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCC-CCCCCCCCCCCCccHHH
Q 013951 17 APGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGI-PEGCENCDLLPTTDFAR 95 (433)
Q Consensus 17 ~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (433)
+..|+.-.+.++..++.||=.+.|+++...... .++.++....++....--. .++ ...-+......
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~---~ve~aA~r~~gy~~~~~w~----~G~lTN~~~l~g~~~------ 156 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKD---LVERAARRAGGYSHNRKWL----GGLLTNARELFGALV------ 156 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHH---HHHHHHHHhcCceeeeeec----cceeecchhhccccc------
Confidence 456788888999999999999999998764433 3333332222333322110 011 11100000000
Q ss_pred HHHHHHHhHHHHHHHHHhCCCCCcEEEE-CCCCc-chHHHHHHcCCCcEEEecc
Q 013951 96 FMKSLHMLQQPFENLFKEKTLKPCCIIS-DMCFP-WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~-D~~~~-~~~~~A~~~giP~v~~~~~ 147 (433)
. -....+....++.. ..+|+||+ |..-- .+..=|.+++||.|.+.=.
T Consensus 157 --~-~~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 157 --R-KFLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred --c-cccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 0 00112333444555 67788774 55444 6778899999999987433
No 438
>PRK12828 short chain dehydrogenase; Provisional
Probab=28.66 E-value=1.3e+02 Score=26.01 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=23.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.++++ ++.|.+- ..+++.|.++|++|.++.-.
T Consensus 9 ~vlIt-Gatg~iG--~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 9 VVAIT-GGFGGLG--RATAAWLAARGARVALIGRG 40 (239)
T ss_pred EEEEE-CCCCcHh--HHHHHHHHHCCCeEEEEeCC
Confidence 34444 5667664 78889999999998888753
No 439
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=28.64 E-value=2.3e+02 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=18.9
Q ss_pred eeecccchhhHHHHHHc-----CCcEE-eccc
Q 013951 362 GFLTHCGWNSSLEGISA-----GVQML-TWPL 387 (433)
Q Consensus 362 ~~ItHGG~gs~~eal~~-----GvP~v-~~P~ 387 (433)
++|.-||=||+.|++.. ..|.+ ++|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 39999999999996532 34444 5885
No 440
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.64 E-value=4.1e+02 Score=23.42 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=30.9
Q ss_pred hhhhhhhccCCCCeEEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEE
Q 013951 268 PECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWV 315 (433)
Q Consensus 268 ~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 315 (433)
+.+.+|+..+ +.++||-.-|...........+.+++++.+..+...
T Consensus 22 ~~~~~~~~~~--~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 22 PLIAELLAGR--RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred HHHHHHHcCC--CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 3455666633 449999887766444556777888999988875433
No 441
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.63 E-value=1.1e+02 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.052 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.++++ |+.|-+ -.++|++|.++|++|+.++-.
T Consensus 5 ~~vlVt-Gasg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVT-GASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEe-cCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 456666 455655 468999999999999887743
No 442
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.61 E-value=59 Score=29.46 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=26.1
Q ss_pred HhhhhcCCCceeeecccchhhHHHHHH----cCCcEEeccc
Q 013951 351 QVLILSHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPL 387 (433)
Q Consensus 351 q~~lL~~~~~~~~ItHGG~gs~~eal~----~GvP~v~~P~ 387 (433)
+.++...+++ +|+=||=||++.+.+ .++|++.+-.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 3444445666 999999999998754 3789998764
No 443
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.47 E-value=4.7e+02 Score=25.30 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
..+|++++.-+ .-.+.+++.|.+-|-+|..+.++..
T Consensus 273 ~Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 273 RGKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 45677776532 3466778888888999888877654
No 444
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=28.45 E-value=3.7e+02 Score=22.78 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=33.8
Q ss_pred eecccchhhHHHH--HHcCCcEEecccccccchhHHHhhhhccce-EEeeeeccCCcccccchhhccc
Q 013951 363 FLTHCGWNSSLEG--ISAGVQMLTWPLFADQFCNEKLIVNVLRIG-VSVGVEVDLPITTSNYLCKISC 427 (433)
Q Consensus 363 ~ItHGG~gs~~ea--l~~GvP~v~~P~~~DQ~~na~~v~e~~G~G-~~l~~~~~~~~~l~~ai~~il~ 427 (433)
++.++|+|.+... ..++....... .+-++.+..+ |..|+- .+++ +.+.|.+++++.+.
T Consensus 104 V~NN~~yg~~~~~q~~~~~~~~~~~~--~~~~d~~~lA-~a~G~~~~~v~----~~~el~~al~~a~~ 164 (196)
T cd02013 104 VFRNRQWGAEKKNQVDFYNNRFVGTE--LESESFAKIA-EACGAKGITVD----KPEDVGPALQKAIA 164 (196)
T ss_pred EEECchhHHHHHHHHHHcCCCccccc--CCCCCHHHHH-HHCCCEEEEEC----CHHHHHHHHHHHHh
Confidence 7799999987642 22343222221 1226778888 688774 3333 45667777777654
No 445
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.40 E-value=56 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=25.3
Q ss_pred hhcCCCceeeecccchhhHHHHHH----cCCcEEeccc
Q 013951 354 ILSHPAVGGFLTHCGWNSSLEGIS----AGVQMLTWPL 387 (433)
Q Consensus 354 lL~~~~~~~~ItHGG~gs~~eal~----~GvP~v~~P~ 387 (433)
+...+++ +|+=||=||++.+.. .++|++.+-.
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 3334566 999999999999877 4789998764
No 446
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.40 E-value=1.1e+02 Score=27.56 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.++++ |+.|.+ -..+++.|.++||+|..+.-.
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 445565 566655 577889999999999988754
No 447
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.37 E-value=1.3e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.1
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 14 PYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 14 ~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
.+...|+-..++.+++.++++|..|..+|......
T Consensus 59 ~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 59 IISYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp EEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 33478889999999999999999999998775544
No 448
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=28.36 E-value=1.7e+02 Score=25.60 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEECCcchhh--hHHHHHHhhhCCCCeEEEE
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQH--GAIVTIVTTPVNAAR--FKTVIARAIKSGLQIRLIE 68 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~r--GH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 68 (433)
..+++++..++ -+.|++++++++.+. ..+|+++-...+.+. +.+..+........+++..
T Consensus 122 ~~~~v~iagG~--Giap~~s~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 122 PPRLLLIAAGS--GITPVMSMLRTLLARGPTADVVLLYYARTREDVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CCCEEEEecCc--cHhHHHHHHHHHHhcCCCCCEEEEEEcCChhhhHHHHHHHHHHHhCCCeEEEE
Confidence 45787777444 799999999999887 467777765543322 2333344332333455543
No 449
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.31 E-value=4.5e+02 Score=25.26 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCC-CEEEEEECC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHG-AIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rG-H~Vt~~~~~ 44 (433)
++|+++=.|.-| ..+|.-|+++| ++|+++.-.
T Consensus 2 ~~ilviGaG~Vg-----~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVG-----SVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhH-----HHHHHHHHhCCCceEEEEeCC
Confidence 467776654444 45799999999 999999854
No 450
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=28.30 E-value=1.1e+02 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhCCCCCcEEEECCCCc-------chHHHHHHcCCCcEEEe
Q 013951 103 LQQPFENLFKEKTLKPCCIISDMCFP-------WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 103 ~~~~l~~~l~~~~~~pD~vI~D~~~~-------~~~~~A~~~giP~v~~~ 145 (433)
..+.+.++++.+..+||++++|.+-. .+..++-.+++|+|-+.
T Consensus 75 E~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 75 ELPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp THHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred hHHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 34667777777778999999998765 23444556789998864
No 451
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=28.21 E-value=6e+02 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 16 LAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 16 ~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
..-|--.=...|++.|+++|.+|..+-+.
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34577778899999999999999998775
No 452
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=28.07 E-value=99 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcch
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
.++.|-+.|.++++.+.|.-.+-+.|.+.--++.++++.+..
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 468899999999999999999999999988889999887654
No 453
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.95 E-value=5e+02 Score=24.20 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCC-----ChHHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCC
Q 013951 7 QVHFLLLPYLAPG-----HLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEG 81 (433)
Q Consensus 7 ~~~il~~~~~~~G-----H~~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (433)
++.|+|.|..+.| -..-+..|++.|.++|.+|.++.+....+..++.... +... ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~~~------------~~ 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LPNA------------VI 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cCCc------------cc
Confidence 3577787762332 2345889999999999999998888444433332211 1100 00
Q ss_pred CCCCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCCcchHHHHHHcCCCcEEEecc
Q 013951 82 CENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 147 (433)
..... -..++..++ .+-|++|+- ..+...+|..+|.|+|.+...
T Consensus 236 l~~k~----------------sL~e~~~li----~~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 LAGKT----------------SLEELAALI----AGADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred cCCCC----------------CHHHHHHHH----hcCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 00000 122344444 467888754 346799999999999997533
No 454
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.94 E-value=4e+02 Score=23.06 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=52.7
Q ss_pred CCChHHHH---HHHHHHHHCCCEEEEEECCcchhh-hHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCccH
Q 013951 18 PGHLIPMF---DIARLLAQHGAIVTIVTTPVNAAR-FKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTTDF 93 (433)
Q Consensus 18 ~GH~~P~l---~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
.||+.+.+ .+++-|..+|++|.+++.-...+. +....++. +. .
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~-------------------g~----------~---- 82 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE-------------------GL----------S---- 82 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc-------------------CC----------C----
Confidence 49988754 356666678999999986644321 11111100 00 0
Q ss_pred HHHHHHHHHhHHHHHHHHHhCCCCC-cEEEECCCCcchHHHHHHcCCCcEE
Q 013951 94 ARFMKSLHMLQQPFENLFKEKTLKP-CCIISDMCFPWTVDTAAKFNVPRII 143 (433)
Q Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~p-D~vI~D~~~~~~~~~A~~~giP~v~ 143 (433)
....++.+.+.+.+.++.++-.+ |..+--++.-|++.+.+.+|-|+=.
T Consensus 83 --p~e~~~~~~~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 83 --WKEVADYYTKEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 11223334455566666554444 7777667777888888888866533
No 455
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=27.89 E-value=14 Score=36.17 Aligned_cols=56 Identities=9% Similarity=0.139 Sum_probs=42.1
Q ss_pred hHHHHHHcCCcEEecccccccchhHHHhhhhccceEEeeeeccCCcccccchhhccccccc
Q 013951 371 SSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSVGVEVDLPITTSNYLCKISCNSQA 431 (433)
Q Consensus 371 s~~eal~~GvP~v~~P~~~DQ~~na~~v~e~~G~G~~l~~~~~~~~~l~~ai~~il~~~~~ 431 (433)
++.||+++|.|++.+ ++..=+..+ ++.--|...++.+-....+++++.++.+|++.
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l 436 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPGQEAVAELADALLKLRRDPEL 436 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCchHHHHHHHHHHHHHhcCHHH
Confidence 788999999999987 455556677 47777888887332223699999999988754
No 456
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.85 E-value=1.1e+02 Score=23.85 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=27.2
Q ss_pred eEEEEeeCCCcCCChhhHHHHHHHHHh--CCCCEEEEEeC
Q 013951 281 SVVYVCLGSICNLPSSQLIELGLGLEA--SNKPFVWVIRG 318 (433)
Q Consensus 281 ~~v~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 318 (433)
.+++++|||......+.+..+.+.+++ .+..+-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999977555667777777754 34577777653
No 457
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.71 E-value=1.3e+02 Score=30.51 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=28.1
Q ss_pred cEEEEEcCCC-------CCChHHHH---HHHHHHHHCCCEEEEEECCcch
Q 013951 8 VHFLLLPYLA-------PGHLIPMF---DIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 8 ~~il~~~~~~-------~GH~~P~l---~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
+++++.+..- .||+.+.+ .+|+-++.+||+|.|+|....+
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 4666665443 39999655 3666777789999999977544
No 458
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.67 E-value=12 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=21.9
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCcEEEecch
Q 013951 116 LKPCCIISDMCFPWTVDTAAKFNVPRIIFHGFS 148 (433)
Q Consensus 116 ~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 148 (433)
.+.|+||.+.. +..+|+++|+|++.+.++.
T Consensus 124 ~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 124 EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 58999999964 5789999999999876543
No 459
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.66 E-value=3.5e+02 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
.|+++++. +.|.+ =.++|++|+++|++|.++..
T Consensus 8 ~k~~lItG-as~gI--G~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITG-CNTGL--GQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeC-CCchH--HHHHHHHHHHCCCEEEEecC
Confidence 36777774 44545 47889999999999987753
No 460
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=27.55 E-value=1.1e+02 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+|.+.-=|+-|-..-+..||..|+++|++|.++=..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 567776677788899999999999999999988433
No 461
>PLN02293 adenine phosphoribosyltransferase
Probab=27.50 E-value=1.8e+02 Score=24.55 Aligned_cols=43 Identities=5% Similarity=-0.039 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHhCCCCCcEEEECC-CCc-chHHHHHHcCCCcEEE
Q 013951 100 LHMLQQPFENLFKEKTLKPCCIISDM-CFP-WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 100 ~~~~~~~l~~~l~~~~~~pD~vI~D~-~~~-~~~~~A~~~giP~v~~ 144 (433)
+..+.+.+.+.+++ .++|+|++=. -.. .+..+|..+|+|++.+
T Consensus 47 ~~~~~~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 47 FKDTIDLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 34455666666666 6899998533 222 6788999999998764
No 462
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.48 E-value=45 Score=30.31 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=23.7
Q ss_pred CCceeeecccchhhHHHHHH---cCCcEEecccc
Q 013951 358 PAVGGFLTHCGWNSSLEGIS---AGVQMLTWPLF 388 (433)
Q Consensus 358 ~~~~~~ItHGG~gs~~eal~---~GvP~v~~P~~ 388 (433)
+++ +|.-||-||+++++. .++|+++++..
T Consensus 58 ~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G 89 (277)
T PRK03708 58 VDF--IIAIGGDGTILRIEHKTKKDIPILGINMG 89 (277)
T ss_pred CCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCC
Confidence 455 999999999999873 46799999863
No 463
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.34 E-value=1e+02 Score=27.39 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCCCcEEEECCCCcc--h-HHHHHHcCCCcEEEec
Q 013951 106 PFENLFKEKTLKPCCIISDMCFPW--T-VDTAAKFNVPRIIFHG 146 (433)
Q Consensus 106 ~l~~~l~~~~~~pD~vI~D~~~~~--~-~~~A~~~giP~v~~~~ 146 (433)
.++++++ .+||+||....... . ..+.+..|+|++.+..
T Consensus 66 n~E~i~~---l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAA---LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHh---cCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4555554 69999998755432 1 2233458999988754
No 464
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=27.33 E-value=1.2e+02 Score=27.69 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcc
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVN 46 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~ 46 (433)
||++.-=|+-|-..-...||..|+++|+.|.++=...+
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 58888888999999999999999999999999865433
No 465
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=27.19 E-value=5.4e+02 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCCChHH-HHHHHHHHHHCCCEEEEEECC--cchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 6 SQVHFLLLPYLAPGHLIP-MFDIARLLAQHGAIVTIVTTP--VNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P-~l~La~~L~~rGH~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
+..||+.+. |+.+ ...|+..|++.|-+|++.+.. +..+.+...+... |+.+..+.
T Consensus 31 ~G~~i~~~~-----hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~-----gi~v~a~~ 88 (406)
T TIGR00936 31 KGARIAACL-----HVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA-----GIPVFAWR 88 (406)
T ss_pred CCCEEEEEE-----echHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC-----CceEEEec
Confidence 356777776 7776 678899999999999999654 3344444444332 78887764
No 466
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=27.11 E-value=4e+02 Score=23.04 Aligned_cols=33 Identities=30% Similarity=0.123 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+++ +++ ++.|.+ =..|++.|.++|++|+.+...
T Consensus 7 ~~i-lIt-Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVA-LVT-GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEE-EEc-CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344 444 566776 478899999999999887644
No 467
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.90 E-value=3.6e+02 Score=24.01 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
|.++++..+ |.+ =.++|+.|.++|++|.++.-.
T Consensus 11 k~vlVtGas-~gi--G~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 11 KVAVITGGG-GVL--GGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeCC
Confidence 566776444 433 378899999999999887643
No 468
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.86 E-value=1e+02 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 013951 4 EASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIV 41 (433)
Q Consensus 4 ~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~ 41 (433)
+.+.+++++.-++..| ..+|+.|.+.||+|++.
T Consensus 25 ~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3456788887765433 67899999999999954
No 469
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=26.80 E-value=2.4e+02 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred eecccchh------hHHHHHHcCCcEEecc
Q 013951 363 FLTHCGWN------SSLEGISAGVQMLTWP 386 (433)
Q Consensus 363 ~ItHGG~g------s~~eal~~GvP~v~~P 386 (433)
++.|.|-| .+.||-..++|||++.
T Consensus 76 ~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 76 VIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 78887744 7889999999999995
No 470
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=26.79 E-value=2.2e+02 Score=24.92 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHhCCCCCcEEEECCCCc----------------------chHHHHHHcCCCcEEEecch
Q 013951 102 MLQQPFENLFKEKTLKPCCIISDMCFP----------------------WTVDTAAKFNVPRIIFHGFS 148 (433)
Q Consensus 102 ~~~~~l~~~l~~~~~~pD~vI~D~~~~----------------------~~~~~A~~~giP~v~~~~~~ 148 (433)
.+...++..+++ .+||+||+..-+- -....++.+|||++.+.+.+
T Consensus 235 kl~r~l~~sl~e--f~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 235 KLKRCLMQSLAE--FRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHHh--hCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 344566667778 9999999754221 12346778899999876654
No 471
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=26.78 E-value=4.3e+02 Score=23.04 Aligned_cols=41 Identities=5% Similarity=0.043 Sum_probs=28.0
Q ss_pred hhhHHHHHHcCCcEEecccccc--cchhHHHhhhhccceEEeee
Q 013951 369 WNSSLEGISAGVQMLTWPLFAD--QFCNEKLIVNVLRIGVSVGV 410 (433)
Q Consensus 369 ~gs~~eal~~GvP~v~~P~~~D--Q~~na~~v~e~~G~G~~l~~ 410 (433)
+.++..|+..|+|+.++|-..+ +..-..++. +.|+....+.
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li-~~GA~~i~~~ 213 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLI-EQGAALITSA 213 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHH-HCCCEEECCH
Confidence 5667778999999999997554 334445654 6686555443
No 472
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.71 E-value=1.2e+02 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCc
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPV 45 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~ 45 (433)
++|+|+-=|+-|--.-+..||..|+++|++|.++=...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 36777777888999999999999999999999995443
No 473
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=26.70 E-value=1.1e+02 Score=28.49 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCCC----hHHHHHHHHHHHHCCCEEEEEECC
Q 013951 6 SQVHFLLLPYLAPGH----LIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 6 ~~~~il~~~~~~~GH----~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+++||+++..+...- +.-...++++|.+.||+|..+-..
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~ 44 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGIT 44 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEEC
Confidence 467899888543331 345678999998999999988755
No 474
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=26.66 E-value=1.7e+02 Score=23.93 Aligned_cols=48 Identities=10% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHHHhCCCCCcEEEECCCCcc---------------hHHHHHHcCCCcEEEecc
Q 013951 98 KSLHMLQQPFENLFKEKTLKPCCIISDMCFPW---------------TVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 98 ~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~---------------~~~~A~~~giP~v~~~~~ 147 (433)
..+....+.+.+++++ .+||.+..+..++. ...++.+.|+|+.-+++.
T Consensus 40 ~RL~~I~~~l~~~i~~--y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 40 SRLKLIYAGVTEIITQ--FQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHHHHHHHH--hCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 3444567888999999 99999998876651 356677788998887654
No 475
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.47 E-value=54 Score=30.26 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=24.1
Q ss_pred CCCceeeecccchhhHHHHHHc----CCcEEeccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGISA----GVQMLTWPL 387 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~~----GvP~v~~P~ 387 (433)
.+++ +|+-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4556 9999999999998753 889998875
No 476
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.35 E-value=1.8e+02 Score=22.94 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEEC
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGA-IVTIVTT 43 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH-~Vt~~~~ 43 (433)
...+++.++.-..+|..-+..++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3567888888888999999999999999987 5656654
No 477
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.20 E-value=3.2e+02 Score=23.15 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEec
Q 013951 22 IPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQ 70 (433)
Q Consensus 22 ~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (433)
.-+..+|+.|.+.|.++. ++......+++. |+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEhh
Confidence 447899999999999984 555455444443 56666553
No 478
>PLN02929 NADH kinase
Probab=26.20 E-value=58 Score=29.93 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=23.1
Q ss_pred CCCceeeecccchhhHHHHHH---cCCcEEeccc
Q 013951 357 HPAVGGFLTHCGWNSSLEGIS---AGVQMLTWPL 387 (433)
Q Consensus 357 ~~~~~~~ItHGG~gs~~eal~---~GvP~v~~P~ 387 (433)
.+++ +|+-||-||++.|.. .++|++.+-.
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~ 95 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNS 95 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEEC
Confidence 3455 999999999999854 4789988754
No 479
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.16 E-value=3.9e+02 Score=22.32 Aligned_cols=100 Identities=9% Similarity=0.013 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE---ECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIV---TTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCE 83 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (433)
+.-|.+++..+.|-..-.+.+|-..+.+|+.|.++ -........ ...+. .++.+..... ++.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~-~~l~~-----~~~~~~~~g~---------g~~ 69 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGER-AAFEP-----HGVEFQVMGT---------GFT 69 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChH-HHHHh-----cCcEEEECCC---------CCe
Confidence 34688888899999999999999999999999554 433111111 12221 1566665431 111
Q ss_pred CCCCCCCccHHHHHHHHHHhHHHHHHHHHhCCCCCcEEEECCCC
Q 013951 84 NCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKPCCIISDMCF 127 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~ 127 (433)
.... ... .-............+.+.+ .++|+||.|-+.
T Consensus 70 ~~~~--~~~--~~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 70 WETQ--NRE--ADTAIAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred ecCC--CcH--HHHHHHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 1110 111 1112233344555666667 899999999754
No 480
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=33 Score=31.44 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHCCCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCCCCc--cHHHHHHHHHHhHHHHH
Q 013951 31 LAQHGAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLLPTT--DFARFMKSLHMLQQPFE 108 (433)
Q Consensus 31 L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 108 (433)
+++.|.+|.++-++.+.-.+.+.. ....+-|..+.+.+.. |.+.......... .-..++......-+.++
T Consensus 107 ~ka~G~DVRiVYS~~dal~iA~en-----pdk~VVffaiGFETT~---P~TA~~l~~~~~e~i~Nf~~ls~H~~~pPa~e 178 (364)
T COG0409 107 AKAEGADVRIVYSPMDALKIAKEN-----PDKKVVFFAIGFETTT---PTTACMLLSAKGEGIENFFVLSNHRLLPPAVE 178 (364)
T ss_pred hhcCCccEEEEecHHHHHHHHhhC-----CCCceEEEeCccccCC---CchHHHHHhccccccceEEEEEeceecCHHHH
Confidence 356699999998885544333221 2234667666553222 2221111111110 00112222233445556
Q ss_pred HHHHhCCCCCcEEEECCCCc------chHHHHHHcCCCcEEE
Q 013951 109 NLFKEKTLKPCCIISDMCFP------WTVDTAAKFNVPRIIF 144 (433)
Q Consensus 109 ~~l~~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~ 144 (433)
.++++ ....|..|.-.+.. .=..+|+++++|.|.-
T Consensus 179 ~Ll~~-~~~idafi~PGHVStIiG~kpY~~la~ky~~P~VVa 219 (364)
T COG0409 179 ALLES-EVLIDAFLAPGHVSTIIGTKPYEFLAEKYKFPIVVA 219 (364)
T ss_pred HHHhc-cccccceeccceeEEEecccccHHHHHhcCCCeEEe
Confidence 66655 46788877655443 1256999999999874
No 481
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=25.94 E-value=1.5e+02 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=30.1
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 8 VHFLLLPYL-APGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~-~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.-|++++=+ ..+...+.....++|.++|+.|.|+++.
T Consensus 151 t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 151 TTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 346666665 5788888888999999999999999887
No 482
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.94 E-value=1.3e+02 Score=26.95 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCcEEEECCC-----Cc-chHHHHHHcCCCcEEEe
Q 013951 104 QQPFENLFKEKTLKPCCIISDMC-----FP-WTVDTAAKFNVPRIIFH 145 (433)
Q Consensus 104 ~~~l~~~l~~~~~~pD~vI~D~~-----~~-~~~~~A~~~giP~v~~~ 145 (433)
...+.+.++. .++|+||+.-- +. -+..+|+.+|+|++.+.
T Consensus 100 a~~Laa~~~~--~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 100 AKALAAAVKK--IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HHHHHHHHHh--cCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 3466777888 89999996432 22 67899999999999853
No 483
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.93 E-value=3.6e+02 Score=25.05 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
..++++++.... .+- .+.|++|+.||.+|++.+=.
T Consensus 34 ~~~~~vVTGans-GIG--~eta~~La~~Ga~Vv~~~R~ 68 (314)
T KOG1208|consen 34 SGKVALVTGATS-GIG--FETARELALRGAHVVLACRN 68 (314)
T ss_pred CCcEEEEECCCC-chH--HHHHHHHHhCCCEEEEEeCC
Confidence 347888885544 453 68999999999999998844
No 484
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=25.88 E-value=1.4e+02 Score=26.96 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+..|+|+. +..++..-...++..|.++||+|..+-.+
T Consensus 18 ~p~vvliH-G~~~~~~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 18 PPHFVLIH-GISGGSWCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred CCeEEEEC-CCCCCcCcHHHHHHHHHhCCCEEEEeccc
Confidence 34566655 55555555778888999899998777655
No 485
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=25.85 E-value=1.2e+02 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
.|.+.-=|+-|...-...||..|+++|++|.++=..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 567776678899999999999999999999988544
No 486
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=25.82 E-value=37 Score=30.76 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.8
Q ss_pred eecccchhhHHH--HHHcCCcEEecccccccchhHHHhhhhccce
Q 013951 363 FLTHCGWNSSLE--GISAGVQMLTWPLFADQFCNEKLIVNVLRIG 405 (433)
Q Consensus 363 ~ItHGG~gs~~e--al~~GvP~v~~P~~~DQ~~na~~v~e~~G~G 405 (433)
.-=-||||++.. |-.+|+-+.++-+..+|...++.-++++|+.
T Consensus 67 LDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 67 LDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp EEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred EEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 455678888775 4455999999999999999997443688875
No 487
>PRK12743 oxidoreductase; Provisional
Probab=25.64 E-value=3.7e+02 Score=23.56 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEEC
Q 013951 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTT 43 (433)
Q Consensus 9 ~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~ 43 (433)
|.++++. +.|.+- ..+|+.|.++||+|.++..
T Consensus 3 k~vlItG-as~giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTA-SDSGIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CEEEEEC-CCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 3556664 444454 7799999999999987754
No 488
>PHA02857 monoglyceride lipase; Provisional
Probab=25.61 E-value=1.2e+02 Score=26.96 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 7 ~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
+.-++++.+|..+|..-...+++.|.++|++|..+=.+
T Consensus 24 ~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~ 61 (276)
T PHA02857 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHI 61 (276)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCC
Confidence 44677887888899999999999999999888877544
No 489
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=25.57 E-value=1.8e+02 Score=21.84 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=26.0
Q ss_pred EEEEEcC--CCCCC-hHHHHHHHHHHHHCC---CEEEEEECCcc
Q 013951 9 HFLLLPY--LAPGH-LIPMFDIARLLAQHG---AIVTIVTTPVN 46 (433)
Q Consensus 9 ~il~~~~--~~~GH-~~P~l~La~~L~~rG---H~Vt~~~~~~~ 46 (433)
+|+++.. |.... ..-.+.++..+...| |+|.++.....
T Consensus 2 ~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~g 45 (122)
T PF02635_consen 2 KVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDG 45 (122)
T ss_dssp EEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchH
Confidence 4555544 33333 677888899999999 99999987743
No 490
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.53 E-value=1.7e+02 Score=24.92 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhCCCCCcEEEEC-CCC-cchHHHHHHcCCCcEEE
Q 013951 103 LQQPFENLFKEKTLKPCCIISD-MCF-PWTVDTAAKFNVPRIIF 144 (433)
Q Consensus 103 ~~~~l~~~l~~~~~~pD~vI~D-~~~-~~~~~~A~~~giP~v~~ 144 (433)
+...+.+.+++ .++|.|++= .-. ..+..+|..+|+|++.+
T Consensus 38 v~~~l~~~~~~--~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 38 VGEEFARRFAD--DGITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 34444455555 689999843 222 26777899999999986
No 491
>PRK13055 putative lipid kinase; Reviewed
Probab=25.41 E-value=2.3e+02 Score=26.47 Aligned_cols=82 Identities=9% Similarity=-0.114 Sum_probs=0.0
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHHhCCCCEEEEEeCCcchhhhhhhhchhhHHHHhCCCCeEEeCcccHhhhhcCCCce
Q 013951 282 VVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVG 361 (433)
Q Consensus 282 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 361 (433)
.+.++-.|-.....+.+..+...|+..+..+.+....... .-..-+=+.......++
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~----------------------~~a~~~~~~~~~~~~d~- 62 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEP----------------------NSAKNEAKRAAEAGFDL- 62 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCC----------------------ccHHHHHHHHhhcCCCE-
Q ss_pred eeecccchhhHHHHHHc------CCcEEeccc
Q 013951 362 GFLTHCGWNSSLEGISA------GVQMLTWPL 387 (433)
Q Consensus 362 ~~ItHGG~gs~~eal~~------GvP~v~~P~ 387 (433)
+|--||=||+.|++.. .+|+-++|.
T Consensus 63 -vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 -IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred -EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
No 492
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.41 E-value=1.1e+02 Score=26.24 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=24.1
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCcEEEecc
Q 013951 116 LKPCCII-SDMCFP-WTVDTAAKFNVPRIIFHGF 147 (433)
Q Consensus 116 ~~pD~vI-~D~~~~-~~~~~A~~~giP~v~~~~~ 147 (433)
..||++| .|+..- -+..=|.++|||+|.+.-+
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 5788866 566443 7788899999999997443
No 493
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=25.38 E-value=6.5e+02 Score=24.65 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=69.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEECCcchhhhHHHHHHhhhCCCCeEEEEecCCCccCCCCCCCCCCCCC
Q 013951 10 FLLLPYLAPGHLIPMFDIARLLAQH-GAIVTIVTTPVNAARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPEGCENCDLL 88 (433)
Q Consensus 10 il~~~~~~~GH~~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (433)
|++..-|+.|-..-++.+|..++.+ .-.|.+++.+-..+.+.. +.-....++....+. .+. .
T Consensus 199 ii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~---R~Ls~~s~v~~~kir---------tg~-----l 261 (435)
T COG0305 199 IIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVM---RLLSSESGIESSKLR---------TGR-----L 261 (435)
T ss_pred EEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHH---Hhhccccccchhccc---------ccc-----c
Confidence 6677789999999999999999876 555999999865543322 221111122222211 111 1
Q ss_pred CCccHHHHHHHH------------------HHhHHHHHHHHHhCCCCCcEEEECCCCc---c----------------hH
Q 013951 89 PTTDFARFMKSL------------------HMLQQPFENLFKEKTLKPCCIISDMCFP---W----------------TV 131 (433)
Q Consensus 89 ~~~~~~~~~~~~------------------~~~~~~l~~~l~~~~~~pD~vI~D~~~~---~----------------~~ 131 (433)
...++..+..+. ..+....+++-++ .+.++++.|.+.. . ..
T Consensus 262 ~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~--~~l~~i~iDYLqLm~~~~~~~~r~qevs~iSr~LK 339 (435)
T COG0305 262 SDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLK--HNLGLIVIDYLQLMTGGKKSENRKQEVSEISRSLK 339 (435)
T ss_pred cHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHh--cCccEEEEEEEEeecccccchhHHHHHHHHHHHHH
Confidence 111122222222 2334455666666 6799999998654 1 24
Q ss_pred HHHHHcCCCcEEE
Q 013951 132 DTAAKFNVPRIIF 144 (433)
Q Consensus 132 ~~A~~~giP~v~~ 144 (433)
.+|+++++|++.+
T Consensus 340 ~lAkEl~vpvial 352 (435)
T COG0305 340 GLAKELGVPVIAL 352 (435)
T ss_pred HHHHhcCCcEEeh
Confidence 6899999999985
No 494
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.30 E-value=64 Score=29.98 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.3
Q ss_pred hhcCCCceeeecccchhhHHHHHH---cCCcEEecccccc
Q 013951 354 ILSHPAVGGFLTHCGWNSSLEGIS---AGVQMLTWPLFAD 390 (433)
Q Consensus 354 lL~~~~~~~~ItHGG~gs~~eal~---~GvP~v~~P~~~D 390 (433)
.|..-++..+|.=||-||+.-|.. +|+|+|++|-.-|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 345567777999999999877644 5999999998765
No 495
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=25.30 E-value=43 Score=29.39 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=17.7
Q ss_pred eecccchhhHHHHHHcCCcE
Q 013951 363 FLTHCGWNSSLEGISAGVQM 382 (433)
Q Consensus 363 ~ItHGG~gs~~eal~~GvP~ 382 (433)
+|+|||...+.-+...|+|.
T Consensus 179 vVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 179 IAAHGNSLRALTKYIENISD 198 (228)
T ss_pred EEcChHHHHHHHHHHhCCCH
Confidence 99999999999998888773
No 496
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=25.27 E-value=1.2e+02 Score=28.06 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEE
Q 013951 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT 42 (433)
Q Consensus 1 m~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~ 42 (433)
|+++. +.++++ |+.|-+ -..|++.|.++||+|+++.
T Consensus 1 ~~~~~---k~vlVt-G~~G~I--G~~l~~~L~~~G~~V~~~~ 36 (325)
T PLN02989 1 MADGG---KVVCVT-GASGYI--ASWIVKLLLFRGYTINATV 36 (325)
T ss_pred CCCCC---CEEEEE-CCchHH--HHHHHHHHHHCCCEEEEEE
Confidence 56653 345555 555655 4678999999999998765
No 497
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=25.13 E-value=1e+02 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECC
Q 013951 8 VHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTP 44 (433)
Q Consensus 8 ~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~ 44 (433)
++|.++=.+++| .+||+.|+++||+|++-...
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 468888888887 58999999999999999865
No 498
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=24.95 E-value=6.2e+02 Score=24.29 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCcEEEECCCCc--chHHHHHHcCCCcEEEecchHH
Q 013951 105 QPFENLFKEKTLKPCCIISDMCFP--WTVDTAAKFNVPRIIFHGFSCF 150 (433)
Q Consensus 105 ~~l~~~l~~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~ 150 (433)
+.+.++.++ .-.++|+|..+. +...=..++||=+++..++-+.
T Consensus 151 ~~I~~~~k~---~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l 195 (383)
T COG0075 151 KEIAKAAKE---HGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL 195 (383)
T ss_pred HHHHHHHHH---cCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence 345556665 367788888776 3344556778888776666554
No 499
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=24.94 E-value=1.7e+02 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCEEEEEECCcch
Q 013951 23 PMFDIARLLAQHGAIVTIVTTPVNA 47 (433)
Q Consensus 23 P~l~La~~L~~rGH~Vt~~~~~~~~ 47 (433)
..+...++|.+.||.|.++|.....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 4666777778899999999988654
No 500
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=24.88 E-value=2.6e+02 Score=27.44 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=36.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEECCcchh
Q 013951 6 SQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAA 48 (433)
Q Consensus 6 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (433)
++..|+|+-.++.|-..-+..||..|.++|+.|.+++....+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3556888888899999999999999999999999999886644
Done!