Query 013952
Match_columns 433
No_of_seqs 307 out of 3037
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:02:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.4E-54 3E-59 415.5 50.0 391 4-427 2-395 (396)
2 COG1249 Lpd Pyruvate/2-oxoglut 100.0 6.2E-55 1.3E-59 413.1 32.9 392 4-429 3-446 (454)
3 KOG1336 Monodehydroascorbate/f 100.0 2.7E-52 5.9E-57 380.4 35.4 400 5-432 74-475 (478)
4 PRK13512 coenzyme A disulfide 100.0 4.3E-51 9.4E-56 395.6 42.7 389 7-422 3-415 (438)
5 PRK09564 coenzyme A disulfide 100.0 1.1E-50 2.3E-55 395.8 45.1 404 7-431 2-431 (444)
6 PRK06370 mercuric reductase; V 100.0 5.6E-52 1.2E-56 405.6 34.7 398 1-431 1-447 (463)
7 PRK05249 soluble pyridine nucl 100.0 1.6E-51 3.5E-56 403.0 34.0 397 1-430 1-446 (461)
8 TIGR01421 gluta_reduc_1 glutat 100.0 4.6E-51 9.9E-56 396.0 32.7 393 4-431 1-444 (450)
9 PRK06116 glutathione reductase 100.0 1.1E-50 2.3E-55 395.4 35.4 394 3-431 2-444 (450)
10 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-50 2.6E-55 393.7 34.0 392 5-431 2-440 (446)
11 PLN02507 glutathione reductase 100.0 2.8E-50 6.1E-55 393.9 36.7 392 5-430 25-476 (499)
12 PRK14694 putative mercuric red 100.0 6.1E-50 1.3E-54 391.2 36.4 395 1-430 1-446 (468)
13 PRK06467 dihydrolipoamide dehy 100.0 2.7E-50 5.9E-55 392.8 33.0 395 2-430 1-448 (471)
14 PTZ00058 glutathione reductase 100.0 2.1E-49 4.7E-54 388.5 37.4 400 5-430 48-550 (561)
15 PRK14989 nitrite reductase sub 100.0 7.2E-48 1.6E-52 393.9 48.4 389 1-424 1-402 (847)
16 TIGR01423 trypano_reduc trypan 100.0 1.7E-49 3.6E-54 385.8 33.0 393 4-431 2-465 (486)
17 PRK07846 mycothione reductase; 100.0 3.8E-49 8.3E-54 382.3 35.3 382 5-422 1-430 (451)
18 PRK06416 dihydrolipoamide dehy 100.0 3.9E-49 8.6E-54 386.0 35.6 394 4-430 3-445 (462)
19 PRK07845 flavoprotein disulfid 100.0 3.8E-49 8.2E-54 384.7 34.9 393 6-430 2-449 (466)
20 PRK08010 pyridine nucleotide-d 100.0 6.4E-49 1.4E-53 382.0 35.0 393 4-430 2-430 (441)
21 PLN02546 glutathione reductase 100.0 2.1E-49 4.6E-54 388.9 31.7 390 5-430 79-525 (558)
22 TIGR02053 MerA mercuric reduct 100.0 3.1E-49 6.7E-54 386.6 32.4 387 6-426 1-437 (463)
23 PRK06115 dihydrolipoamide dehy 100.0 9.8E-49 2.1E-53 381.8 35.2 394 5-430 3-449 (466)
24 PRK05976 dihydrolipoamide dehy 100.0 5.8E-49 1.3E-53 385.0 33.6 399 2-430 1-455 (472)
25 PRK07818 dihydrolipoamide dehy 100.0 9.3E-49 2E-53 382.9 34.2 394 1-430 1-449 (466)
26 TIGR02374 nitri_red_nirB nitri 100.0 7.4E-47 1.6E-51 387.4 47.6 381 8-422 1-388 (785)
27 PRK04965 NADH:flavorubredoxin 100.0 7.9E-47 1.7E-51 360.1 44.1 360 6-402 3-367 (377)
28 PRK06912 acoL dihydrolipoamide 100.0 4.5E-48 9.8E-53 377.0 34.1 392 7-431 2-442 (458)
29 PRK13748 putative mercuric red 100.0 8.7E-48 1.9E-52 385.5 37.0 392 4-430 97-539 (561)
30 PRK07251 pyridine nucleotide-d 100.0 9.5E-48 2.1E-52 373.4 33.3 390 5-430 3-429 (438)
31 PRK06327 dihydrolipoamide dehy 100.0 1.1E-47 2.5E-52 375.5 34.0 395 3-430 2-458 (475)
32 TIGR03452 mycothione_red mycot 100.0 1.2E-47 2.5E-52 372.5 33.7 382 5-422 2-433 (452)
33 PTZ00153 lipoamide dehydrogena 100.0 6.2E-48 1.3E-52 382.6 31.4 396 5-430 116-643 (659)
34 PRK14727 putative mercuric red 100.0 2.3E-47 5.1E-52 373.3 34.8 391 5-430 16-457 (479)
35 TIGR01438 TGR thioredoxin and 100.0 1.1E-47 2.3E-52 374.4 31.7 391 5-430 2-461 (484)
36 PRK06292 dihydrolipoamide dehy 100.0 4.6E-47 9.9E-52 371.5 33.2 392 5-430 3-443 (460)
37 PTZ00052 thioredoxin reductase 100.0 7.2E-47 1.6E-51 370.3 33.4 395 2-431 2-472 (499)
38 TIGR01350 lipoamide_DH dihydro 100.0 2.3E-46 5E-51 366.8 34.9 394 5-430 1-444 (461)
39 TIGR03385 CoA_CoA_reduc CoA-di 100.0 8.9E-44 1.9E-48 345.0 41.2 382 19-423 1-409 (427)
40 COG1251 NirB NAD(P)H-nitrite r 100.0 2.2E-44 4.7E-49 343.3 33.2 383 5-420 3-391 (793)
41 KOG1335 Dihydrolipoamide dehyd 100.0 4.5E-45 9.8E-50 321.4 24.8 392 5-428 39-486 (506)
42 COG1252 Ndh NADH dehydrogenase 100.0 7.7E-43 1.7E-47 322.1 29.3 311 5-344 3-343 (405)
43 KOG0405 Pyridine nucleotide-di 100.0 7.5E-43 1.6E-47 303.6 26.3 387 5-423 20-458 (478)
44 PTZ00318 NADH dehydrogenase-li 100.0 7.4E-41 1.6E-45 322.8 31.0 301 4-335 9-350 (424)
45 TIGR03169 Nterm_to_SelD pyridi 100.0 6.2E-39 1.3E-43 305.1 32.4 305 7-341 1-319 (364)
46 PRK10262 thioredoxin reductase 100.0 1.7E-37 3.6E-42 289.8 25.4 293 4-332 5-314 (321)
47 TIGR01292 TRX_reduct thioredox 100.0 7E-37 1.5E-41 283.9 28.7 285 6-330 1-298 (300)
48 TIGR03140 AhpF alkyl hydropero 100.0 4.8E-37 1E-41 302.8 25.1 286 5-331 212-511 (515)
49 KOG4716 Thioredoxin reductase 100.0 5.3E-37 1.1E-41 266.2 21.3 286 110-423 158-474 (503)
50 COG0492 TrxB Thioredoxin reduc 100.0 6.1E-36 1.3E-40 270.8 24.9 288 5-332 3-300 (305)
51 PRK15317 alkyl hydroperoxide r 100.0 5.5E-36 1.2E-40 295.7 26.7 288 5-332 211-511 (517)
52 TIGR03143 AhpF_homolog putativ 100.0 1.1E-35 2.4E-40 295.1 28.0 291 2-332 1-308 (555)
53 KOG1346 Programmed cell death 100.0 5.1E-36 1.1E-40 266.7 20.8 407 5-424 178-653 (659)
54 TIGR01316 gltA glutamate synth 100.0 2.1E-35 4.5E-40 286.3 24.5 286 4-330 132-447 (449)
55 PRK12831 putative oxidoreducta 100.0 3.8E-35 8.3E-40 284.7 26.1 289 5-333 140-461 (464)
56 PRK12778 putative bifunctional 100.0 2.4E-33 5.1E-38 288.4 25.3 288 5-333 431-750 (752)
57 PRK09853 putative selenate red 100.0 8.1E-33 1.8E-37 281.2 28.2 281 5-333 539-842 (1019)
58 COG0446 HcaD Uncharacterized N 100.0 4E-31 8.7E-36 256.7 39.0 386 8-420 1-407 (415)
59 PRK11749 dihydropyrimidine deh 100.0 2.4E-32 5.1E-37 266.5 25.3 287 5-334 140-453 (457)
60 PRK12779 putative bifunctional 100.0 2.6E-32 5.7E-37 282.1 26.4 288 5-333 306-627 (944)
61 PRK12770 putative glutamate sy 100.0 4.5E-32 9.8E-37 255.9 25.2 289 5-332 18-349 (352)
62 PRK12810 gltD glutamate syntha 100.0 3.4E-31 7.4E-36 258.7 24.1 293 5-334 143-466 (471)
63 PRK12775 putative trifunctiona 100.0 2.7E-31 5.9E-36 277.1 24.8 290 5-334 430-756 (1006)
64 TIGR03315 Se_ygfK putative sel 100.0 2E-30 4.4E-35 265.2 25.5 283 5-332 537-839 (1012)
65 TIGR01318 gltD_gamma_fam gluta 100.0 1E-29 2.2E-34 247.3 26.1 285 5-331 141-464 (467)
66 KOG2495 NADH-dehydrogenase (ub 100.0 2.6E-30 5.6E-35 232.2 19.7 295 4-330 54-394 (491)
67 PRK12814 putative NADPH-depend 100.0 5.2E-30 1.1E-34 258.5 24.3 287 5-336 193-504 (652)
68 PRK12769 putative oxidoreducta 100.0 3.3E-29 7.1E-34 253.9 28.2 286 5-332 327-651 (654)
69 PRK13984 putative oxidoreducta 100.0 3.9E-29 8.5E-34 252.1 26.3 283 4-332 282-601 (604)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 3.6E-29 7.8E-34 244.4 24.3 293 6-334 144-480 (485)
71 COG3634 AhpF Alkyl hydroperoxi 100.0 3.3E-30 7.1E-35 224.9 11.6 290 5-330 211-512 (520)
72 PRK12809 putative oxidoreducta 100.0 2.5E-28 5.4E-33 246.4 25.4 287 5-333 310-635 (639)
73 TIGR01372 soxA sarcosine oxida 100.0 1.7E-27 3.7E-32 250.4 29.9 281 5-332 163-471 (985)
74 KOG0404 Thioredoxin reductase 100.0 7.9E-29 1.7E-33 203.4 15.5 294 2-327 5-313 (322)
75 PLN02852 ferredoxin-NADP+ redu 100.0 2.3E-27 4.9E-32 228.0 23.4 294 5-332 26-421 (491)
76 PRK12771 putative glutamate sy 100.0 1.7E-26 3.6E-31 230.7 25.7 287 5-335 137-446 (564)
77 PLN02172 flavin-containing mon 99.9 7.6E-25 1.7E-29 211.5 22.9 286 4-332 9-352 (461)
78 KOG3851 Sulfide:quinone oxidor 99.9 1.3E-22 2.8E-27 175.6 17.2 304 4-335 38-363 (446)
79 KOG2755 Oxidoreductase [Genera 99.9 2E-22 4.4E-27 169.8 11.2 268 7-300 1-322 (334)
80 COG0493 GltD NADPH-dependent g 99.9 7.7E-22 1.7E-26 188.0 14.6 289 5-329 123-447 (457)
81 PF00743 FMO-like: Flavin-bind 99.9 7.9E-21 1.7E-25 186.0 18.9 298 6-332 2-396 (531)
82 PRK06567 putative bifunctional 99.9 6.4E-20 1.4E-24 185.1 21.4 281 5-331 383-768 (1028)
83 PF07992 Pyr_redox_2: Pyridine 99.8 1.4E-21 3.1E-26 170.1 0.9 185 7-301 1-200 (201)
84 PF13738 Pyr_redox_3: Pyridine 99.8 2.4E-19 5.3E-24 156.2 8.3 176 9-197 1-202 (203)
85 COG3486 IucD Lysine/ornithine 99.8 1.1E-16 2.3E-21 144.7 24.7 289 1-299 1-387 (436)
86 PF13434 K_oxygenase: L-lysine 99.8 4.7E-18 1E-22 158.0 15.3 247 5-261 2-340 (341)
87 COG2072 TrkA Predicted flavopr 99.8 1.3E-17 2.9E-22 160.7 17.0 186 1-198 4-211 (443)
88 KOG0399 Glutamate synthase [Am 99.8 3.5E-18 7.6E-23 169.0 11.1 287 5-331 1785-2118(2142)
89 PRK05329 anaerobic glycerol-3- 99.7 6.8E-17 1.5E-21 153.5 17.8 173 151-331 204-419 (422)
90 KOG1399 Flavin-containing mono 99.7 8.5E-16 1.8E-20 146.0 16.0 238 4-268 5-275 (448)
91 PTZ00188 adrenodoxin reductase 99.6 1.2E-14 2.6E-19 138.0 19.5 274 5-306 39-422 (506)
92 KOG1800 Ferredoxin/adrenodoxin 99.6 2.4E-15 5.2E-20 134.1 12.5 289 5-331 20-405 (468)
93 COG1148 HdrA Heterodisulfide r 99.6 5.3E-13 1.1E-17 122.9 21.5 198 111-328 298-540 (622)
94 PF00070 Pyr_redox: Pyridine n 99.5 2.3E-13 5E-18 98.9 11.3 80 164-246 1-80 (80)
95 COG2081 Predicted flavoprotein 99.4 2.3E-12 5E-17 117.3 15.0 84 176-262 83-169 (408)
96 TIGR03378 glycerol3P_GlpB glyc 99.4 1.4E-10 3.1E-15 109.2 21.8 138 183-328 245-418 (419)
97 COG4529 Uncharacterized protei 99.3 2.3E-10 5.1E-15 107.0 20.9 182 6-195 2-231 (474)
98 PF03486 HI0933_like: HI0933-l 99.2 7.6E-11 1.7E-15 112.1 11.4 85 176-262 81-166 (409)
99 COG3075 GlpB Anaerobic glycero 99.2 3.5E-10 7.6E-15 99.7 14.0 126 201-331 255-416 (421)
100 PLN02463 lycopene beta cyclase 99.2 2.4E-09 5.2E-14 103.5 18.7 118 5-126 28-170 (447)
101 COG0029 NadB Aspartate oxidase 99.1 4.9E-10 1.1E-14 104.7 12.3 57 274-332 340-397 (518)
102 COG0579 Predicted dehydrogenas 99.1 2.2E-09 4.9E-14 101.2 16.0 59 203-262 152-211 (429)
103 PRK08401 L-aspartate oxidase; 99.1 3.5E-10 7.6E-15 110.8 10.0 54 274-330 309-364 (466)
104 PRK07804 L-aspartate oxidase; 99.1 5.2E-10 1.1E-14 111.4 11.2 33 5-40 16-48 (541)
105 PRK12842 putative succinate de 99.1 4.1E-10 8.8E-15 113.2 8.8 103 161-264 156-277 (574)
106 PRK06854 adenylylsulfate reduc 99.1 1.6E-09 3.5E-14 109.2 12.9 33 5-40 11-45 (608)
107 PRK07843 3-ketosteroid-delta-1 99.0 7.2E-10 1.6E-14 110.8 9.7 106 161-268 159-276 (557)
108 TIGR00551 nadB L-aspartate oxi 99.0 1.5E-09 3.2E-14 107.2 11.1 55 274-331 332-388 (488)
109 PRK09897 hypothetical protein; 99.0 5.4E-09 1.2E-13 102.6 14.6 166 6-184 2-213 (534)
110 PRK08275 putative oxidoreducta 99.0 5.3E-09 1.1E-13 104.8 14.7 33 5-40 9-43 (554)
111 PRK11728 hydroxyglutarate oxid 99.0 1.5E-08 3.3E-13 97.5 17.3 58 203-263 148-205 (393)
112 PRK13800 putative oxidoreducta 99.0 4.8E-09 1E-13 110.6 13.8 33 5-40 13-45 (897)
113 PRK10015 oxidoreductase; Provi 99.0 4.9E-09 1.1E-13 101.6 12.6 123 1-126 1-165 (429)
114 PRK10157 putative oxidoreducta 99.0 3.2E-09 7E-14 102.9 11.2 123 1-127 1-166 (428)
115 TIGR01790 carotene-cycl lycope 99.0 3E-08 6.6E-13 95.4 17.6 115 7-125 1-141 (388)
116 PF05834 Lycopene_cycl: Lycope 99.0 1.5E-07 3.3E-12 89.7 21.9 115 7-126 1-143 (374)
117 PRK08071 L-aspartate oxidase; 99.0 5.4E-09 1.2E-13 103.5 12.3 55 274-331 331-387 (510)
118 PF01266 DAO: FAD dependent ox 99.0 9E-10 1.9E-14 104.7 6.3 60 203-264 146-205 (358)
119 COG0644 FixC Dehydrogenases (f 99.0 5E-09 1.1E-13 100.7 11.4 121 5-128 3-155 (396)
120 PRK09077 L-aspartate oxidase; 98.9 9.9E-09 2.1E-13 102.3 10.8 55 274-331 352-408 (536)
121 PRK09231 fumarate reductase fl 98.9 2.6E-08 5.7E-13 100.1 13.8 56 274-331 357-413 (582)
122 PRK07512 L-aspartate oxidase; 98.9 1.4E-08 3E-13 100.7 11.4 55 274-331 340-396 (513)
123 TIGR01292 TRX_reduct thioredox 98.9 3.6E-08 7.9E-13 91.3 13.7 99 164-265 2-115 (300)
124 PRK06847 hypothetical protein; 98.9 1.2E-08 2.5E-13 97.8 10.5 123 2-127 1-165 (375)
125 PRK04176 ribulose-1,5-biphosph 98.9 8.5E-09 1.8E-13 92.4 8.6 117 5-125 25-173 (257)
126 TIGR01176 fum_red_Fp fumarate 98.8 1.8E-08 3.9E-13 101.1 11.2 56 274-331 356-412 (580)
127 PRK07190 hypothetical protein; 98.8 1.5E-08 3.2E-13 99.7 10.3 124 1-127 1-167 (487)
128 TIGR02032 GG-red-SF geranylger 98.8 1.8E-08 3.9E-13 93.0 9.7 117 6-125 1-148 (295)
129 TIGR02061 aprA adenosine phosp 98.8 1.1E-08 2.4E-13 102.5 8.7 31 7-40 1-35 (614)
130 PTZ00363 rab-GDP dissociation 98.8 2.4E-07 5.2E-12 89.3 17.2 63 202-264 230-292 (443)
131 PRK06134 putative FAD-binding 98.8 1.9E-08 4.1E-13 101.3 10.0 101 162-263 161-279 (581)
132 PRK06834 hypothetical protein; 98.8 3.3E-08 7.1E-13 97.4 11.4 122 5-129 3-160 (488)
133 PRK04176 ribulose-1,5-biphosph 98.8 4E-07 8.7E-12 81.6 17.3 172 157-332 20-254 (257)
134 TIGR00292 thiazole biosynthesi 98.8 2.6E-08 5.7E-13 88.9 9.5 116 5-124 21-169 (254)
135 PRK08773 2-octaprenyl-3-methyl 98.8 2E-08 4.3E-13 96.7 9.0 124 1-127 1-171 (392)
136 TIGR03329 Phn_aa_oxid putative 98.8 9.5E-08 2.1E-12 93.8 13.7 55 203-261 182-236 (460)
137 TIGR03364 HpnW_proposed FAD de 98.8 1.8E-07 3.9E-12 89.2 15.3 53 203-262 144-197 (365)
138 TIGR02734 crtI_fam phytoene de 98.8 3.9E-08 8.5E-13 97.9 11.1 57 204-261 219-275 (502)
139 PRK07395 L-aspartate oxidase; 98.8 2.8E-08 6.1E-13 99.0 10.0 53 274-329 346-400 (553)
140 TIGR01373 soxB sarcosine oxida 98.8 6.5E-07 1.4E-11 86.7 19.2 58 203-261 182-239 (407)
141 PRK08274 tricarballylate dehyd 98.8 4.6E-07 1E-11 89.3 18.1 64 203-267 130-198 (466)
142 PRK13977 myosin-cross-reactive 98.8 1.8E-07 4E-12 91.3 14.6 90 172-261 192-292 (576)
143 COG2509 Uncharacterized FAD-de 98.8 2.2E-07 4.7E-12 86.3 14.2 86 181-267 150-235 (486)
144 TIGR01377 soxA_mon sarcosine o 98.7 4.5E-07 9.7E-12 87.0 16.9 56 203-261 144-199 (380)
145 PRK09126 hypothetical protein; 98.7 7.8E-08 1.7E-12 92.7 11.7 124 1-129 1-171 (392)
146 PRK07494 2-octaprenyl-6-methox 98.7 3.6E-08 7.8E-13 94.9 9.3 37 1-40 3-39 (388)
147 PRK00711 D-amino acid dehydrog 98.7 4.3E-07 9.4E-12 88.3 16.9 58 203-262 200-257 (416)
148 PRK06184 hypothetical protein; 98.7 5.5E-08 1.2E-12 96.7 10.7 121 4-127 2-170 (502)
149 TIGR00292 thiazole biosynthesi 98.7 1.3E-06 2.9E-11 78.0 18.1 169 160-331 19-252 (254)
150 PRK11259 solA N-methyltryptoph 98.7 3.9E-07 8.5E-12 87.3 15.8 57 203-262 148-204 (376)
151 COG1053 SdhA Succinate dehydro 98.7 7.8E-08 1.7E-12 95.1 10.4 37 1-40 2-38 (562)
152 COG1233 Phytoene dehydrogenase 98.7 7.4E-08 1.6E-12 94.9 10.2 57 203-260 223-279 (487)
153 PRK12409 D-amino acid dehydrog 98.7 5.1E-07 1.1E-11 87.6 15.6 58 203-262 196-258 (410)
154 PRK08020 ubiF 2-octaprenyl-3-m 98.7 1.1E-07 2.4E-12 91.6 10.6 124 1-127 1-171 (391)
155 PRK07251 pyridine nucleotide-d 98.7 5.6E-08 1.2E-12 95.0 8.3 99 5-128 157-256 (438)
156 PTZ00383 malate:quinone oxidor 98.7 4E-07 8.7E-12 89.1 14.1 58 203-262 210-273 (497)
157 PRK06481 fumarate reductase fl 98.7 1.7E-06 3.6E-11 85.9 18.7 64 203-267 189-257 (506)
158 TIGR01350 lipoamide_DH dihydro 98.7 2E-07 4.2E-12 91.9 12.0 99 5-128 170-272 (461)
159 PRK07045 putative monooxygenas 98.7 8.6E-08 1.9E-12 92.2 9.1 122 1-125 1-165 (388)
160 PRK07236 hypothetical protein; 98.7 2.2E-07 4.8E-12 89.3 11.6 119 5-126 6-155 (386)
161 TIGR00275 flavoprotein, HI0933 98.6 4.7E-07 1E-11 87.1 13.8 83 176-262 77-160 (400)
162 COG0654 UbiH 2-polyprenyl-6-me 98.6 7.3E-07 1.6E-11 85.6 14.7 61 203-265 103-165 (387)
163 PRK07333 2-octaprenyl-6-methox 98.6 1.3E-07 2.8E-12 91.5 9.7 120 6-128 2-170 (403)
164 PLN02697 lycopene epsilon cycl 98.6 1.3E-07 2.8E-12 93.1 9.5 116 5-125 108-248 (529)
165 PRK15317 alkyl hydroperoxide r 98.6 1E-06 2.2E-11 87.8 16.0 101 162-264 211-324 (517)
166 PRK08850 2-octaprenyl-6-methox 98.6 1.1E-07 2.3E-12 92.1 8.7 123 1-127 1-170 (405)
167 PRK06185 hypothetical protein; 98.6 1.2E-07 2.7E-12 91.8 9.1 37 1-40 1-38 (407)
168 PRK05192 tRNA uridine 5-carbox 98.6 1.9E-07 4.1E-12 92.1 10.3 118 3-124 2-156 (618)
169 COG1635 THI4 Ribulose 1,5-bisp 98.6 1.2E-07 2.5E-12 79.4 7.2 33 5-40 30-62 (262)
170 TIGR03140 AhpF alkyl hydropero 98.6 1.1E-06 2.4E-11 87.4 15.6 102 161-264 211-325 (515)
171 TIGR02731 phytoene_desat phyto 98.6 8.4E-07 1.8E-11 87.2 14.6 58 203-260 212-274 (453)
172 PLN02612 phytoene desaturase 98.6 1.1E-06 2.4E-11 88.1 15.6 58 203-260 307-364 (567)
173 PRK08244 hypothetical protein; 98.6 1.9E-07 4E-12 92.8 9.9 120 5-127 2-161 (493)
174 PF13454 NAD_binding_9: FAD-NA 98.6 6.6E-07 1.4E-11 74.0 11.5 32 9-40 1-34 (156)
175 PRK07233 hypothetical protein; 98.6 2.8E-07 6.1E-12 90.1 10.7 56 203-260 197-252 (434)
176 PRK01747 mnmC bifunctional tRN 98.6 7.8E-07 1.7E-11 91.4 14.2 57 203-262 407-463 (662)
177 PF02852 Pyr_redox_dim: Pyridi 98.6 5E-08 1.1E-12 75.5 4.1 56 376-431 46-104 (110)
178 COG0665 DadA Glycine/D-amino a 98.6 2.2E-06 4.8E-11 82.5 16.3 57 203-262 155-212 (387)
179 PRK08013 oxidoreductase; Provi 98.6 2.3E-07 4.9E-12 89.6 8.8 120 5-127 3-170 (400)
180 PRK08849 2-octaprenyl-3-methyl 98.5 2.2E-07 4.7E-12 89.2 8.4 120 5-127 3-169 (384)
181 PF13738 Pyr_redox_3: Pyridine 98.5 7.7E-07 1.7E-11 77.3 11.0 98 166-265 1-143 (203)
182 PRK09754 phenylpropionate diox 98.5 7.9E-07 1.7E-11 85.7 11.7 99 162-264 3-114 (396)
183 PRK08163 salicylate hydroxylas 98.5 3E-07 6.6E-12 88.7 8.9 123 1-127 1-168 (396)
184 PF01134 GIDA: Glucose inhibit 98.5 2.4E-07 5.2E-12 86.6 7.7 113 7-123 1-150 (392)
185 PF00890 FAD_binding_2: FAD bi 98.5 9.5E-07 2.1E-11 85.9 12.3 60 203-263 140-204 (417)
186 TIGR02730 carot_isom carotene 98.5 1.2E-07 2.6E-12 94.0 5.9 57 204-261 229-285 (493)
187 PRK11101 glpA sn-glycerol-3-ph 98.5 3.4E-06 7.4E-11 84.4 16.2 60 202-262 147-211 (546)
188 PF00070 Pyr_redox: Pyridine n 98.5 3.8E-07 8.2E-12 66.0 7.0 78 7-109 1-80 (80)
189 PRK11445 putative oxidoreducta 98.5 5.2E-07 1.1E-11 85.4 9.8 39 288-331 263-301 (351)
190 PRK06126 hypothetical protein; 98.5 7.2E-07 1.6E-11 89.7 11.4 34 4-40 6-39 (545)
191 PRK07208 hypothetical protein; 98.5 2.1E-07 4.5E-12 92.2 7.2 58 204-261 218-279 (479)
192 PLN00093 geranylgeranyl diphos 98.5 7.3E-07 1.6E-11 86.8 10.8 34 4-40 38-71 (450)
193 PRK05714 2-octaprenyl-3-methyl 98.5 3.8E-07 8.2E-12 88.3 8.8 120 5-127 2-170 (405)
194 PRK07364 2-octaprenyl-6-methox 98.5 4E-07 8.7E-12 88.5 8.9 33 5-40 18-50 (415)
195 PLN02172 flavin-containing mon 98.5 3.8E-06 8.2E-11 82.0 15.5 135 161-298 9-214 (461)
196 KOG2820 FAD-dependent oxidored 98.5 1.9E-07 4E-12 83.2 5.7 60 203-262 152-212 (399)
197 PRK07608 ubiquinone biosynthes 98.5 7.1E-07 1.5E-11 85.9 10.3 33 5-40 5-37 (388)
198 PRK05732 2-octaprenyl-6-methox 98.5 4.3E-07 9.3E-12 87.7 8.8 43 84-126 126-170 (395)
199 TIGR01813 flavo_cyto_c flavocy 98.5 4.9E-06 1.1E-10 81.4 15.8 65 203-267 129-198 (439)
200 PRK08205 sdhA succinate dehydr 98.5 9.9E-06 2.2E-10 81.8 18.3 60 203-262 139-206 (583)
201 PRK13369 glycerol-3-phosphate 98.5 1.3E-06 2.8E-11 86.7 11.7 37 1-40 2-38 (502)
202 TIGR02733 desat_CrtD C-3',4' d 98.5 1.1E-06 2.4E-11 87.3 11.2 57 203-260 231-292 (492)
203 PRK08132 FAD-dependent oxidore 98.5 5.9E-07 1.3E-11 90.3 9.3 33 5-40 23-55 (547)
204 PRK07121 hypothetical protein; 98.5 6.1E-06 1.3E-10 81.8 16.2 65 203-267 176-245 (492)
205 PRK11883 protoporphyrinogen ox 98.4 7.2E-06 1.6E-10 80.7 16.4 39 220-260 235-273 (451)
206 PF12831 FAD_oxidored: FAD dep 98.4 2.1E-07 4.5E-12 90.3 5.4 113 7-123 1-148 (428)
207 TIGR02023 BchP-ChlP geranylger 98.4 7.7E-07 1.7E-11 85.6 9.1 32 6-40 1-32 (388)
208 TIGR03385 CoA_CoA_reduc CoA-di 98.4 9.4E-07 2E-11 86.1 9.8 98 6-127 138-235 (427)
209 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.1E-06 2.4E-11 88.2 10.3 33 5-40 10-42 (538)
210 PRK06753 hypothetical protein; 98.4 3E-06 6.6E-11 81.1 13.0 117 7-126 2-153 (373)
211 TIGR01789 lycopene_cycl lycope 98.4 1.6E-06 3.4E-11 82.4 10.8 111 7-125 1-138 (370)
212 PF04820 Trp_halogenase: Trypt 98.4 5.8E-07 1.3E-11 87.6 8.1 59 204-263 154-212 (454)
213 PF01946 Thi4: Thi4 family; PD 98.4 3.1E-07 6.8E-12 77.4 5.3 33 5-40 17-49 (230)
214 TIGR00562 proto_IX_ox protopor 98.4 6E-06 1.3E-10 81.5 15.4 40 219-260 238-277 (462)
215 PRK07588 hypothetical protein; 98.4 1.5E-06 3.2E-11 83.8 10.7 119 6-127 1-160 (391)
216 PRK06847 hypothetical protein; 98.4 4.4E-06 9.6E-11 80.0 14.0 102 162-265 4-166 (375)
217 TIGR01984 UbiH 2-polyprenyl-6- 98.4 6.7E-07 1.5E-11 85.9 8.3 117 7-126 1-163 (382)
218 PRK09564 coenzyme A disulfide 98.4 1.9E-06 4.2E-11 84.5 11.6 101 163-265 1-118 (444)
219 PLN02661 Putative thiazole syn 98.4 9E-07 2E-11 81.5 8.5 33 5-40 92-125 (357)
220 COG1232 HemY Protoporphyrinoge 98.4 1.6E-06 3.6E-11 82.6 10.4 51 205-260 216-266 (444)
221 PRK05257 malate:quinone oxidor 98.4 2E-05 4.4E-10 77.5 18.3 59 203-262 182-246 (494)
222 PRK06996 hypothetical protein; 98.4 9.5E-07 2.1E-11 85.2 8.9 122 1-123 7-172 (398)
223 PRK06175 L-aspartate oxidase; 98.4 1.1E-06 2.5E-11 85.3 9.3 55 274-331 330-386 (433)
224 PF01494 FAD_binding_3: FAD bi 98.4 3.9E-07 8.5E-12 86.4 6.0 32 6-40 2-33 (356)
225 PRK05868 hypothetical protein; 98.4 1.6E-06 3.4E-11 82.8 10.1 118 6-126 2-161 (372)
226 PRK05945 sdhA succinate dehydr 98.4 1.1E-06 2.4E-11 88.6 9.4 35 5-40 3-37 (575)
227 COG0578 GlpA Glycerol-3-phosph 98.4 9.8E-07 2.1E-11 85.3 8.5 60 202-263 162-226 (532)
228 TIGR01988 Ubi-OHases Ubiquinon 98.4 1E-06 2.3E-11 84.6 8.7 117 7-126 1-164 (385)
229 PRK06069 sdhA succinate dehydr 98.4 1.1E-06 2.3E-11 88.7 9.1 37 1-40 1-40 (577)
230 TIGR02028 ChlP geranylgeranyl 98.4 2E-06 4.4E-11 82.7 10.3 32 6-40 1-32 (398)
231 PRK04965 NADH:flavorubredoxin 98.4 2.1E-06 4.6E-11 82.2 10.0 99 5-127 141-241 (377)
232 PRK06912 acoL dihydrolipoamide 98.3 2E-06 4.4E-11 84.4 9.7 99 5-128 170-271 (458)
233 PRK10262 thioredoxin reductase 98.3 2E-05 4.2E-10 73.8 15.2 100 161-264 5-119 (321)
234 COG0644 FixC Dehydrogenases (f 98.3 4.1E-05 8.9E-10 73.8 17.6 97 163-260 4-150 (396)
235 COG2907 Predicted NAD/FAD-bind 98.3 2.9E-05 6.2E-10 69.8 14.9 57 203-261 216-272 (447)
236 PF01134 GIDA: Glucose inhibit 98.3 7.9E-06 1.7E-10 76.5 12.1 95 164-260 1-150 (392)
237 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 2.6E-06 5.7E-11 81.8 9.3 33 5-40 2-34 (390)
238 KOG2415 Electron transfer flav 98.3 1.1E-05 2.3E-10 74.1 12.3 59 204-262 183-256 (621)
239 PRK06452 sdhA succinate dehydr 98.3 2.8E-06 6E-11 85.4 9.6 37 1-40 1-37 (566)
240 PRK12416 protoporphyrinogen ox 98.3 8.4E-06 1.8E-10 80.4 13.0 51 205-259 227-277 (463)
241 TIGR02732 zeta_caro_desat caro 98.3 2.4E-05 5.1E-10 77.1 15.9 59 203-261 218-283 (474)
242 COG3380 Predicted NAD/FAD-depe 98.3 2.6E-06 5.6E-11 73.8 7.9 32 6-40 2-33 (331)
243 PTZ00139 Succinate dehydrogena 98.3 3.7E-05 8E-10 78.0 17.6 58 203-260 165-227 (617)
244 COG1635 THI4 Ribulose 1,5-bisp 98.3 2.9E-05 6.3E-10 65.3 13.7 172 158-332 26-259 (262)
245 PRK05976 dihydrolipoamide dehy 98.3 3.3E-06 7.2E-11 83.3 9.7 99 5-128 180-284 (472)
246 PRK08243 4-hydroxybenzoate 3-m 98.3 4.2E-06 9.2E-11 80.6 10.0 33 5-40 2-34 (392)
247 PRK06416 dihydrolipoamide dehy 98.3 3E-06 6.4E-11 83.5 9.1 98 6-128 173-275 (462)
248 TIGR01989 COQ6 Ubiquinone bios 98.3 5.6E-06 1.2E-10 80.8 10.8 44 85-128 134-186 (437)
249 PTZ00318 NADH dehydrogenase-li 98.3 7.3E-06 1.6E-10 79.7 11.4 102 161-265 9-128 (424)
250 PRK06116 glutathione reductase 98.3 3.5E-06 7.6E-11 82.7 9.3 99 5-128 167-268 (450)
251 PRK09078 sdhA succinate dehydr 98.3 3.3E-06 7.1E-11 85.4 9.2 33 5-40 12-44 (598)
252 PRK13512 coenzyme A disulfide 98.3 3.7E-06 8.1E-11 82.0 9.4 95 6-127 149-243 (438)
253 PRK07803 sdhA succinate dehydr 98.3 2.9E-06 6.4E-11 86.1 8.9 33 5-40 8-40 (626)
254 TIGR03169 Nterm_to_SelD pyridi 98.3 5.3E-06 1.1E-10 79.1 10.2 97 164-265 1-110 (364)
255 TIGR01320 mal_quin_oxido malat 98.3 3.1E-05 6.6E-10 76.2 15.7 59 203-262 177-240 (483)
256 PLN02464 glycerol-3-phosphate 98.3 1.5E-05 3.2E-10 81.0 13.8 61 202-262 230-296 (627)
257 PRK06617 2-octaprenyl-6-methox 98.3 3.7E-06 8E-11 80.4 9.1 32 6-40 2-33 (374)
258 PRK14694 putative mercuric red 98.3 5E-06 1.1E-10 82.0 10.0 97 5-128 178-276 (468)
259 TIGR01424 gluta_reduc_2 glutat 98.3 4E-06 8.6E-11 82.1 9.2 99 5-128 166-266 (446)
260 TIGR02374 nitri_red_nirB nitri 98.2 4.1E-06 8.9E-11 87.4 9.7 97 165-265 1-111 (785)
261 PRK13339 malate:quinone oxidor 98.2 7.1E-05 1.5E-09 73.3 17.5 60 203-263 183-248 (497)
262 PRK14989 nitrite reductase sub 98.2 8.6E-06 1.9E-10 85.1 11.7 100 162-265 3-116 (847)
263 PRK05249 soluble pyridine nucl 98.2 5E-06 1.1E-10 81.9 9.5 99 5-128 175-275 (461)
264 TIGR01812 sdhA_frdA_Gneg succi 98.2 4.6E-06 9.9E-11 84.2 9.3 56 274-331 341-401 (566)
265 PRK07573 sdhA succinate dehydr 98.2 7.6E-06 1.7E-10 83.2 10.9 33 5-40 35-67 (640)
266 COG1249 Lpd Pyruvate/2-oxoglut 98.2 7.2E-06 1.6E-10 79.0 10.1 100 5-129 173-276 (454)
267 PRK12835 3-ketosteroid-delta-1 98.2 9.1E-05 2E-09 74.7 18.4 66 203-268 212-282 (584)
268 PF07992 Pyr_redox_2: Pyridine 98.2 2.3E-06 5.1E-11 74.1 6.1 103 164-267 1-127 (201)
269 COG1252 Ndh NADH dehydrogenase 98.2 6.9E-06 1.5E-10 77.3 9.5 101 162-267 3-116 (405)
270 PRK07057 sdhA succinate dehydr 98.2 5.5E-06 1.2E-10 83.6 9.5 33 5-40 12-44 (591)
271 PRK07236 hypothetical protein; 98.2 1.4E-05 3.1E-10 76.8 11.8 102 161-264 5-156 (386)
272 TIGR02053 MerA mercuric reduct 98.2 6.6E-06 1.4E-10 81.1 9.6 98 6-128 167-269 (463)
273 PRK06370 mercuric reductase; V 98.2 6.5E-06 1.4E-10 81.1 9.4 99 5-128 171-274 (463)
274 TIGR02032 GG-red-SF geranylger 98.2 2.5E-05 5.4E-10 72.0 12.8 98 164-263 2-149 (295)
275 PLN02661 Putative thiazole syn 98.2 0.00012 2.6E-09 67.6 16.8 169 161-333 91-328 (357)
276 PLN02487 zeta-carotene desatur 98.2 1.6E-05 3.5E-10 79.2 12.0 60 202-261 293-359 (569)
277 COG0445 GidA Flavin-dependent 98.2 1.9E-06 4.2E-11 81.9 5.1 117 4-124 3-157 (621)
278 TIGR03143 AhpF_homolog putativ 98.2 2.5E-05 5.5E-10 78.4 13.5 99 163-265 5-117 (555)
279 PRK07818 dihydrolipoamide dehy 98.2 8E-06 1.7E-10 80.5 9.8 98 6-128 173-276 (466)
280 PRK07846 mycothione reductase; 98.2 9E-06 1.9E-10 79.6 10.0 98 5-128 166-265 (451)
281 PLN02576 protoporphyrinogen ox 98.2 7.1E-05 1.5E-09 74.5 16.5 34 4-40 11-45 (496)
282 PRK12770 putative glutamate sy 98.2 6.4E-06 1.4E-10 78.0 8.5 101 161-261 17-129 (352)
283 PRK09853 putative selenate red 98.2 1.4E-05 3.1E-10 83.5 11.4 91 161-263 538-636 (1019)
284 TIGR01421 gluta_reduc_1 glutat 98.2 8.2E-06 1.8E-10 79.9 9.3 99 5-128 166-268 (450)
285 PRK12779 putative bifunctional 98.2 7.6E-06 1.6E-10 86.4 9.5 93 161-263 305-406 (944)
286 PLN00128 Succinate dehydrogena 98.2 9.4E-06 2E-10 82.3 9.8 33 5-40 50-82 (635)
287 PLN02463 lycopene beta cyclase 98.1 2.9E-05 6.4E-10 75.3 12.7 98 163-263 29-170 (447)
288 PRK06327 dihydrolipoamide dehy 98.1 8.7E-06 1.9E-10 80.4 9.2 99 5-128 183-287 (475)
289 PRK11749 dihydropyrimidine deh 98.1 8.5E-06 1.8E-10 80.0 9.0 90 161-261 139-236 (457)
290 PF14759 Reductase_C: Reductas 98.1 2.8E-05 6.1E-10 56.6 9.3 79 345-429 1-81 (85)
291 PRK12845 3-ketosteroid-delta-1 98.1 9.2E-05 2E-09 74.3 16.2 65 202-267 215-284 (564)
292 PRK08773 2-octaprenyl-3-methyl 98.1 4.5E-05 9.8E-10 73.5 13.6 102 162-265 6-172 (392)
293 PRK12843 putative FAD-binding 98.1 4.5E-05 9.8E-10 77.0 14.0 64 203-267 220-288 (578)
294 PRK06475 salicylate hydroxylas 98.1 1.1E-05 2.4E-10 77.9 9.2 32 6-40 3-34 (400)
295 PF13450 NAD_binding_8: NAD(P) 98.1 3.3E-06 7.2E-11 58.6 3.9 28 10-40 1-28 (68)
296 PRK07845 flavoprotein disulfid 98.1 1.2E-05 2.5E-10 79.2 9.2 98 6-128 178-277 (466)
297 PRK07538 hypothetical protein; 98.1 1.1E-05 2.4E-10 78.3 8.9 32 6-40 1-32 (413)
298 COG0492 TrxB Thioredoxin reduc 98.1 9.4E-05 2E-09 67.8 14.3 99 163-265 4-118 (305)
299 PRK08294 phenol 2-monooxygenas 98.1 1.7E-05 3.7E-10 80.7 10.5 35 3-40 30-65 (634)
300 TIGR03219 salicylate_mono sali 98.1 4.4E-05 9.6E-10 74.1 12.9 42 85-126 117-160 (414)
301 PLN02507 glutathione reductase 98.1 1.4E-05 3E-10 79.2 9.5 99 5-128 203-303 (499)
302 PRK06834 hypothetical protein; 98.1 6.1E-05 1.3E-09 74.4 14.0 101 163-265 4-159 (488)
303 PRK06115 dihydrolipoamide dehy 98.1 1.3E-05 2.8E-10 78.9 9.2 99 5-128 174-279 (466)
304 PRK08244 hypothetical protein; 98.1 4.9E-05 1.1E-09 75.5 13.3 102 163-264 3-161 (493)
305 PRK08626 fumarate reductase fl 98.1 1E-05 2.2E-10 82.5 8.5 37 1-40 1-37 (657)
306 PRK08958 sdhA succinate dehydr 98.1 1.5E-05 3.3E-10 80.4 9.7 33 5-40 7-39 (588)
307 TIGR00136 gidA glucose-inhibit 98.1 2.3E-05 5.1E-10 77.5 10.6 32 6-40 1-32 (617)
308 PRK07045 putative monooxygenas 98.1 7.2E-05 1.6E-09 72.0 13.8 104 162-265 5-168 (388)
309 PRK07333 2-octaprenyl-6-methox 98.1 6.8E-05 1.5E-09 72.6 13.7 99 164-264 3-169 (403)
310 TIGR01316 gltA glutamate synth 98.1 1E-05 2.3E-10 79.1 7.9 92 161-263 132-232 (449)
311 PLN02815 L-aspartate oxidase 98.1 0.00012 2.5E-09 73.9 15.3 57 203-259 154-219 (594)
312 PRK08163 salicylate hydroxylas 98.1 6.5E-05 1.4E-09 72.5 13.2 101 162-264 4-168 (396)
313 PRK06263 sdhA succinate dehydr 98.1 1.2E-05 2.6E-10 80.6 8.2 55 274-331 347-402 (543)
314 COG1231 Monoamine oxidase [Ami 98.0 0.00011 2.5E-09 68.9 13.8 41 4-47 6-46 (450)
315 TIGR03452 mycothione_red mycot 98.0 2.1E-05 4.6E-10 77.0 9.6 98 5-128 169-268 (452)
316 COG0446 HcaD Uncharacterized N 98.0 1.5E-05 3.3E-10 77.3 8.5 97 6-126 137-238 (415)
317 PTZ00052 thioredoxin reductase 98.0 2.3E-05 4.9E-10 77.7 9.7 97 6-128 183-281 (499)
318 PRK12839 hypothetical protein; 98.0 0.0003 6.6E-09 70.8 17.8 65 203-267 213-282 (572)
319 PF00743 FMO-like: Flavin-bind 98.0 0.0001 2.2E-09 73.2 14.1 137 163-299 2-194 (531)
320 PRK08010 pyridine nucleotide-d 98.0 2.1E-05 4.7E-10 76.9 9.2 99 5-128 158-257 (441)
321 TIGR01423 trypano_reduc trypan 98.0 2.1E-05 4.5E-10 77.5 9.0 99 5-128 187-291 (486)
322 PRK05714 2-octaprenyl-3-methyl 98.0 8.1E-05 1.8E-09 72.1 13.1 101 163-265 3-171 (405)
323 PRK13748 putative mercuric red 98.0 2.5E-05 5.5E-10 79.0 9.5 97 5-128 270-368 (561)
324 TIGR01438 TGR thioredoxin and 98.0 2.7E-05 5.8E-10 76.9 9.4 96 6-128 181-282 (484)
325 PRK14727 putative mercuric red 98.0 2.7E-05 5.9E-10 76.9 9.4 96 6-128 189-286 (479)
326 TIGR01318 gltD_gamma_fam gluta 98.0 2.3E-05 4.9E-10 77.0 8.7 92 161-263 140-239 (467)
327 PRK12831 putative oxidoreducta 98.0 2E-05 4.3E-10 77.3 8.0 94 161-264 139-243 (464)
328 TIGR01984 UbiH 2-polyprenyl-6- 98.0 0.00011 2.3E-09 70.6 13.0 98 164-263 1-163 (382)
329 PRK06184 hypothetical protein; 98.0 0.0001 2.3E-09 73.4 13.2 99 163-263 4-169 (502)
330 PRK06292 dihydrolipoamide dehy 98.0 2.9E-05 6.3E-10 76.5 9.1 98 5-128 169-271 (460)
331 KOG1336 Monodehydroascorbate/f 98.0 2.8E-05 6E-10 73.0 8.3 101 5-129 213-317 (478)
332 PRK10157 putative oxidoreducta 98.0 0.00014 2.9E-09 70.9 13.5 98 163-262 6-164 (428)
333 PRK07588 hypothetical protein; 98.0 0.00012 2.6E-09 70.6 13.1 99 164-265 2-161 (391)
334 PRK05868 hypothetical protein; 98.0 8.5E-05 1.8E-09 70.9 11.7 101 163-265 2-163 (372)
335 PLN02852 ferredoxin-NADP+ redu 98.0 2.9E-05 6.3E-10 75.8 8.5 91 161-262 25-126 (491)
336 PTZ00058 glutathione reductase 98.0 3.6E-05 7.8E-10 76.8 9.4 99 5-128 237-339 (561)
337 PRK09126 hypothetical protein; 97.9 0.00018 3.9E-09 69.4 13.8 101 163-265 4-170 (392)
338 TIGR01317 GOGAT_sm_gam glutama 97.9 3.4E-05 7.3E-10 76.2 8.7 90 161-261 142-239 (485)
339 PRK12266 glpD glycerol-3-phosp 97.9 1.7E-05 3.6E-10 78.8 6.2 58 203-262 154-216 (508)
340 PRK07608 ubiquinone biosynthes 97.9 0.00019 4E-09 69.1 13.3 99 163-264 6-169 (388)
341 TIGR01988 Ubi-OHases Ubiquinon 97.9 0.00019 4E-09 69.0 13.3 99 164-264 1-165 (385)
342 PLN02697 lycopene epsilon cycl 97.9 0.00017 3.7E-09 71.3 13.0 98 163-262 109-248 (529)
343 COG0493 GltD NADPH-dependent g 97.9 3.2E-05 6.9E-10 74.7 7.8 120 108-260 90-218 (457)
344 TIGR02485 CobZ_N-term precorri 97.9 0.00016 3.4E-09 70.7 12.7 66 203-268 122-190 (432)
345 PLN02568 polyamine oxidase 97.9 1.3E-05 2.8E-10 79.7 5.2 40 1-40 1-42 (539)
346 PRK12778 putative bifunctional 97.9 3.5E-05 7.7E-10 80.4 8.7 94 161-264 430-532 (752)
347 PRK07190 hypothetical protein; 97.9 0.00018 4E-09 71.0 13.1 100 163-264 6-167 (487)
348 PF01494 FAD_binding_3: FAD bi 97.9 0.00014 3E-09 68.9 11.9 102 164-265 3-175 (356)
349 PTZ00306 NADH-dependent fumara 97.9 0.00049 1.1E-08 75.0 17.3 33 5-40 409-441 (1167)
350 COG2072 TrkA Predicted flavopr 97.9 0.0004 8.6E-09 67.6 14.7 137 162-299 8-186 (443)
351 PRK01438 murD UDP-N-acetylmura 97.9 7.8E-05 1.7E-09 73.8 9.8 81 161-267 15-95 (480)
352 PRK05192 tRNA uridine 5-carbox 97.9 0.00018 3.8E-09 71.5 12.0 96 163-260 5-155 (618)
353 PRK06467 dihydrolipoamide dehy 97.8 6.9E-05 1.5E-09 73.9 9.2 97 6-128 175-277 (471)
354 PRK06753 hypothetical protein; 97.8 0.00015 3.2E-09 69.4 11.3 100 164-265 2-155 (373)
355 PRK07364 2-octaprenyl-6-methox 97.8 0.00028 6.1E-09 68.6 13.1 102 162-265 18-184 (415)
356 PRK08132 FAD-dependent oxidore 97.8 0.00039 8.3E-09 70.1 14.4 103 162-264 23-187 (547)
357 TIGR01790 carotene-cycl lycope 97.8 0.0003 6.5E-09 67.7 13.1 97 164-262 1-141 (388)
358 PRK08013 oxidoreductase; Provi 97.8 0.00028 6E-09 68.2 12.8 101 163-265 4-171 (400)
359 PRK06617 2-octaprenyl-6-methox 97.8 0.0003 6.6E-09 67.3 12.9 99 164-265 3-163 (374)
360 TIGR03315 Se_ygfK putative sel 97.8 9.5E-05 2.1E-09 77.8 10.0 90 162-263 537-634 (1012)
361 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.00037 8E-09 67.2 13.6 101 162-264 5-171 (391)
362 KOG0029 Amine oxidase [Seconda 97.8 2.1E-05 4.6E-10 76.9 4.9 34 4-40 14-47 (501)
363 PRK10015 oxidoreductase; Provi 97.8 0.00037 7.9E-09 67.8 13.3 98 163-262 6-164 (429)
364 PRK12809 putative oxidoreducta 97.8 6E-05 1.3E-09 77.1 8.2 91 161-262 309-407 (639)
365 PTZ00188 adrenodoxin reductase 97.8 0.00012 2.7E-09 70.5 9.3 130 161-303 38-177 (506)
366 PRK12775 putative trifunctiona 97.8 7.1E-05 1.5E-09 79.9 8.5 93 162-264 430-532 (1006)
367 KOG4254 Phytoene desaturase [C 97.8 0.00012 2.6E-09 68.2 8.8 56 204-260 264-319 (561)
368 KOG2844 Dimethylglycine dehydr 97.8 9.3E-05 2E-09 72.1 8.3 73 186-263 172-244 (856)
369 PRK12810 gltD glutamate syntha 97.8 7.7E-05 1.7E-09 73.5 7.8 90 161-261 142-239 (471)
370 PF01946 Thi4: Thi4 family; PD 97.8 0.0008 1.7E-08 57.2 12.6 106 159-264 14-167 (230)
371 PRK06475 salicylate hydroxylas 97.7 0.00049 1.1E-08 66.5 13.2 100 163-264 3-169 (400)
372 PRK08850 2-octaprenyl-6-methox 97.7 0.00053 1.1E-08 66.4 13.5 101 162-264 4-170 (405)
373 PTZ00153 lipoamide dehydrogena 97.7 0.00014 3.1E-09 73.8 9.7 98 6-128 313-430 (659)
374 PRK12814 putative NADPH-depend 97.7 9.3E-05 2E-09 75.8 8.2 92 161-263 192-291 (652)
375 PF06039 Mqo: Malate:quinone o 97.7 8E-05 1.7E-09 70.2 7.0 85 204-289 181-274 (488)
376 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.00041 8.9E-09 69.8 12.7 101 162-264 10-176 (538)
377 PRK08849 2-octaprenyl-3-methyl 97.7 0.00047 1E-08 66.2 12.5 101 163-265 4-170 (384)
378 TIGR01811 sdhA_Bsu succinate d 97.7 0.00013 2.8E-09 73.9 8.8 54 274-330 369-423 (603)
379 KOG2665 Predicted FAD-dependen 97.7 9.6E-05 2.1E-09 65.6 6.8 59 204-262 196-257 (453)
380 PRK12769 putative oxidoreducta 97.7 0.00012 2.5E-09 75.3 8.5 91 161-262 326-424 (654)
381 PLN02546 glutathione reductase 97.7 0.00014 3.1E-09 72.6 8.7 99 5-128 252-353 (558)
382 TIGR00136 gidA glucose-inhibit 97.7 0.00072 1.6E-08 67.2 13.2 98 164-262 2-154 (617)
383 PRK01438 murD UDP-N-acetylmura 97.7 0.00024 5.2E-09 70.4 9.9 135 5-191 16-154 (480)
384 PRK06185 hypothetical protein; 97.7 0.00076 1.6E-08 65.4 13.3 101 162-263 6-170 (407)
385 TIGR01372 soxA sarcosine oxida 97.7 0.00058 1.3E-08 73.3 13.3 101 162-264 163-288 (985)
386 KOG1399 Flavin-containing mono 97.6 0.0012 2.6E-08 63.7 13.8 137 162-299 6-197 (448)
387 PLN02985 squalene monooxygenas 97.6 6.7E-05 1.5E-09 74.4 5.2 34 4-40 42-75 (514)
388 PRK09897 hypothetical protein; 97.6 0.0012 2.6E-08 65.4 13.8 98 163-262 2-166 (534)
389 PRK07494 2-octaprenyl-6-methox 97.6 0.001 2.2E-08 64.1 13.2 100 162-264 7-169 (388)
390 PF12831 FAD_oxidored: FAD dep 97.6 4.9E-05 1.1E-09 73.9 4.1 95 165-260 2-148 (428)
391 PRK05732 2-octaprenyl-6-methox 97.6 0.0013 2.7E-08 63.5 13.3 100 163-264 4-171 (395)
392 KOG2311 NAD/FAD-utilizing prot 97.6 0.00015 3.4E-09 67.9 6.4 34 4-40 27-60 (679)
393 KOG0404 Thioredoxin reductase 97.6 0.00066 1.4E-08 57.4 9.4 97 162-262 8-124 (322)
394 PRK05335 tRNA (uracil-5-)-meth 97.6 9.3E-05 2E-09 70.2 5.0 32 6-40 3-34 (436)
395 TIGR01789 lycopene_cycl lycope 97.6 0.00049 1.1E-08 65.5 9.9 94 164-263 1-139 (370)
396 TIGR01989 COQ6 Ubiquinone bios 97.6 0.0012 2.7E-08 64.5 13.0 102 164-265 2-186 (437)
397 TIGR00031 UDP-GALP_mutase UDP- 97.5 9.8E-05 2.1E-09 69.7 4.7 32 6-40 2-33 (377)
398 TIGR03219 salicylate_mono sali 97.5 0.00069 1.5E-08 65.8 10.8 99 164-264 2-161 (414)
399 PRK08641 sdhA succinate dehydr 97.5 9.7E-05 2.1E-09 74.7 4.9 55 274-331 354-409 (589)
400 PF05834 Lycopene_cycl: Lycope 97.5 0.0014 3.1E-08 62.5 12.6 96 165-263 2-143 (374)
401 PRK02106 choline dehydrogenase 97.5 0.00011 2.3E-09 74.2 5.1 37 1-40 1-38 (560)
402 PRK12834 putative FAD-binding 97.5 0.0001 2.3E-09 74.0 5.0 35 3-40 2-36 (549)
403 PRK06996 hypothetical protein; 97.5 0.0015 3.2E-08 63.2 12.7 98 162-261 11-173 (398)
404 PTZ00367 squalene epoxidase; P 97.5 0.00011 2.3E-09 73.5 4.7 34 4-40 32-65 (567)
405 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0018 3.9E-08 62.4 13.0 102 163-265 3-166 (392)
406 PRK12771 putative glutamate sy 97.5 0.00033 7.2E-09 70.7 8.0 91 161-263 136-235 (564)
407 PLN02268 probable polyamine ox 97.5 0.00013 2.8E-09 71.4 4.7 41 218-260 210-250 (435)
408 PRK13984 putative oxidoreducta 97.4 0.00044 9.5E-09 70.6 8.3 90 161-261 282-379 (604)
409 PRK11445 putative oxidoreducta 97.4 0.0031 6.7E-08 59.8 13.5 97 164-264 3-159 (351)
410 PLN02927 antheraxanthin epoxid 97.4 0.00016 3.5E-09 73.0 4.9 34 4-40 80-113 (668)
411 TIGR02023 BchP-ChlP geranylger 97.4 0.0024 5.1E-08 61.5 12.8 98 164-264 2-157 (388)
412 KOG1335 Dihydrolipoamide dehyd 97.4 0.00035 7.6E-09 63.8 6.1 97 5-128 211-317 (506)
413 PRK07538 hypothetical protein; 97.4 0.0024 5.3E-08 61.9 12.5 99 164-264 2-167 (413)
414 COG3634 AhpF Alkyl hydroperoxi 97.4 0.0014 3.1E-08 59.2 9.6 136 161-296 210-362 (520)
415 KOG2404 Fumarate reductase, fl 97.4 0.0013 2.9E-08 58.7 9.3 73 185-260 122-204 (477)
416 PF13454 NAD_binding_9: FAD-NA 97.4 0.0036 7.8E-08 51.6 11.6 41 218-260 114-155 (156)
417 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00061 1.3E-08 65.1 7.8 34 164-197 2-35 (433)
418 PRK06126 hypothetical protein; 97.3 0.0029 6.3E-08 63.8 12.9 100 162-263 7-189 (545)
419 KOG0685 Flavin-containing amin 97.3 0.00026 5.7E-09 66.6 4.9 35 4-40 20-54 (498)
420 COG3349 Uncharacterized conser 97.3 0.00024 5.2E-09 68.0 4.6 32 6-40 1-32 (485)
421 PF00732 GMC_oxred_N: GMC oxid 97.3 0.0002 4.3E-09 66.1 3.9 63 205-267 194-263 (296)
422 PRK12837 3-ketosteroid-delta-1 97.3 0.00026 5.6E-09 70.6 4.8 32 5-40 7-38 (513)
423 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0035 7.6E-08 60.3 12.4 101 163-264 3-165 (390)
424 PRK06567 putative bifunctional 97.3 0.00062 1.3E-08 70.8 7.4 34 161-194 382-415 (1028)
425 KOG0399 Glutamate synthase [Am 97.3 0.0007 1.5E-08 69.8 7.3 90 161-261 1784-1881(2142)
426 TIGR02028 ChlP geranylgeranyl 97.3 0.006 1.3E-07 58.8 13.4 100 164-264 2-162 (398)
427 COG1251 NirB NAD(P)H-nitrite r 97.2 0.0024 5.2E-08 63.6 10.1 102 162-267 3-118 (793)
428 PF06100 Strep_67kDa_ant: Stre 97.2 0.0028 6E-08 60.7 10.2 89 172-260 173-272 (500)
429 PLN02676 polyamine oxidase 97.2 0.00045 9.8E-09 68.2 5.1 40 219-260 245-284 (487)
430 COG2081 Predicted flavoprotein 97.2 0.0084 1.8E-07 55.8 12.7 116 5-123 3-165 (408)
431 COG3380 Predicted NAD/FAD-depe 97.2 0.003 6.5E-08 55.3 9.2 96 164-261 3-159 (331)
432 KOG1276 Protoporphyrinogen oxi 97.2 0.00071 1.5E-08 62.9 5.7 55 5-60 11-68 (491)
433 PRK12844 3-ketosteroid-delta-1 97.1 0.0006 1.3E-08 68.6 4.9 64 203-267 207-275 (557)
434 PRK08401 L-aspartate oxidase; 97.1 0.0065 1.4E-07 59.9 12.0 97 163-262 2-175 (466)
435 KOG2495 NADH-dehydrogenase (ub 97.1 0.0036 7.8E-08 58.3 9.2 104 161-267 54-175 (491)
436 PLN02927 antheraxanthin epoxid 97.1 0.013 2.8E-07 59.5 14.0 35 161-195 80-114 (668)
437 COG1148 HdrA Heterodisulfide r 97.0 0.0017 3.6E-08 61.4 6.9 73 161-233 123-207 (622)
438 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.00073 1.6E-08 64.6 4.7 31 7-40 2-32 (433)
439 PLN02985 squalene monooxygenas 97.0 0.01 2.3E-07 59.0 12.9 102 162-265 43-211 (514)
440 PRK08255 salicylyl-CoA 5-hydro 97.0 0.00071 1.5E-08 70.7 4.7 31 7-40 2-34 (765)
441 PLN02529 lysine-specific histo 97.0 0.00083 1.8E-08 68.8 5.0 33 5-40 160-192 (738)
442 PLN00093 geranylgeranyl diphos 97.0 0.014 3E-07 57.1 13.3 102 162-264 39-201 (450)
443 COG0445 GidA Flavin-dependent 97.0 0.0022 4.8E-08 61.7 7.3 96 163-260 5-156 (621)
444 KOG1298 Squalene monooxygenase 97.0 0.00088 1.9E-08 61.3 4.3 34 4-40 44-77 (509)
445 TIGR02462 pyranose_ox pyranose 97.0 0.00083 1.8E-08 66.5 4.5 59 209-267 219-284 (544)
446 KOG2960 Protein involved in th 96.9 0.00024 5.3E-09 59.4 0.5 43 6-49 77-119 (328)
447 KOG2614 Kynurenine 3-monooxyge 96.9 0.0012 2.5E-08 61.4 4.5 33 5-40 2-34 (420)
448 PLN02328 lysine-specific histo 96.9 0.0012 2.5E-08 68.2 5.0 33 5-40 238-270 (808)
449 COG3573 Predicted oxidoreducta 96.9 0.0014 3.1E-08 58.9 4.7 34 4-40 4-37 (552)
450 PRK07804 L-aspartate oxidase; 96.9 0.016 3.4E-07 58.3 12.8 54 207-260 147-208 (541)
451 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.017 3.7E-07 58.5 13.1 51 210-261 135-190 (566)
452 COG0562 Glf UDP-galactopyranos 96.8 0.002 4.4E-08 57.7 5.1 33 5-40 1-33 (374)
453 PRK12266 glpD glycerol-3-phosp 96.8 0.022 4.8E-07 56.8 13.2 33 163-195 7-39 (508)
454 PRK13369 glycerol-3-phosphate 96.8 0.019 4.2E-07 57.2 12.6 32 163-194 7-38 (502)
455 PRK08275 putative oxidoreducta 96.8 0.027 5.8E-07 56.9 13.6 55 207-261 140-199 (554)
456 PRK08294 phenol 2-monooxygenas 96.7 0.021 4.5E-07 58.5 12.7 102 162-263 32-211 (634)
457 COG2303 BetA Choline dehydroge 96.7 0.0015 3.3E-08 65.3 4.0 59 208-267 207-271 (542)
458 PRK06854 adenylylsulfate reduc 96.7 0.031 6.8E-07 56.9 13.3 97 163-260 12-193 (608)
459 PRK06175 L-aspartate oxidase; 96.6 0.029 6.4E-07 54.7 12.2 54 206-260 130-187 (433)
460 TIGR01811 sdhA_Bsu succinate d 96.6 0.03 6.5E-07 57.0 12.6 44 217-260 146-194 (603)
461 PRK09078 sdhA succinate dehydr 96.6 0.034 7.5E-07 56.5 12.8 52 209-260 154-210 (598)
462 PRK06452 sdhA succinate dehydr 96.6 0.03 6.5E-07 56.6 12.2 51 209-260 141-196 (566)
463 PF14721 AIF_C: Apoptosis-indu 96.5 0.012 2.6E-07 44.9 6.9 33 324-361 1-34 (133)
464 PRK07573 sdhA succinate dehydr 96.5 0.035 7.7E-07 56.9 12.8 47 213-260 179-230 (640)
465 TIGR00551 nadB L-aspartate oxi 96.5 0.035 7.7E-07 55.1 12.4 56 206-262 130-189 (488)
466 PRK08958 sdhA succinate dehydr 96.4 0.05 1.1E-06 55.3 12.8 50 211-260 150-204 (588)
467 PRK14106 murD UDP-N-acetylmura 96.4 0.014 3E-07 57.4 8.7 34 4-40 4-37 (450)
468 PF13450 NAD_binding_8: NAD(P) 96.4 0.0068 1.5E-07 41.9 4.5 32 167-198 1-32 (68)
469 PRK05945 sdhA succinate dehydr 96.4 0.056 1.2E-06 54.8 12.8 53 208-261 139-196 (575)
470 PRK14106 murD UDP-N-acetylmura 96.3 0.018 4E-07 56.6 9.2 82 161-267 4-85 (450)
471 PRK07057 sdhA succinate dehydr 96.3 0.072 1.6E-06 54.2 13.4 32 163-194 13-44 (591)
472 PLN03000 amine oxidase 96.3 0.0049 1.1E-07 63.9 4.9 33 5-40 184-216 (881)
473 PRK06263 sdhA succinate dehydr 96.3 0.058 1.2E-06 54.4 12.5 53 209-261 139-196 (543)
474 PRK02705 murD UDP-N-acetylmura 96.2 0.023 5E-07 56.0 9.1 136 7-190 2-140 (459)
475 PRK08255 salicylyl-CoA 5-hydro 96.2 0.016 3.5E-07 60.7 8.3 33 164-196 2-36 (765)
476 PLN00128 Succinate dehydrogena 96.2 0.077 1.7E-06 54.3 12.7 51 210-260 193-248 (635)
477 TIGR01810 betA choline dehydro 96.2 0.0042 9.1E-08 62.4 3.7 59 208-267 198-260 (532)
478 KOG2614 Kynurenine 3-monooxyge 96.2 0.034 7.4E-07 52.0 9.1 33 163-195 3-35 (420)
479 TIGR03862 flavo_PP4765 unchara 96.1 0.054 1.2E-06 51.3 10.6 84 174-262 56-141 (376)
480 PLN02785 Protein HOTHEAD 96.1 0.0062 1.3E-07 61.5 4.6 36 5-44 55-90 (587)
481 PRK07803 sdhA succinate dehydr 96.1 0.085 1.8E-06 54.0 12.8 32 163-194 9-40 (626)
482 KOG2853 Possible oxidoreductas 96.1 0.0057 1.2E-07 55.3 3.7 36 5-40 86-122 (509)
483 KOG2311 NAD/FAD-utilizing prot 96.1 0.021 4.6E-07 54.1 7.5 33 162-194 28-60 (679)
484 PRK06069 sdhA succinate dehydr 96.1 0.089 1.9E-06 53.4 12.6 50 211-261 144-199 (577)
485 PLN02976 amine oxidase 96.0 0.0072 1.6E-07 65.3 4.7 33 5-40 693-725 (1713)
486 PTZ00367 squalene epoxidase; P 96.0 0.078 1.7E-06 53.4 11.5 33 163-195 34-66 (567)
487 COG4529 Uncharacterized protei 95.9 0.084 1.8E-06 50.6 10.7 101 163-264 2-166 (474)
488 KOG3923 D-aspartate oxidase [A 95.9 0.014 3E-07 51.9 5.0 53 5-57 3-59 (342)
489 COG0654 UbiH 2-polyprenyl-6-me 95.9 0.015 3.2E-07 55.9 5.8 57 163-219 3-60 (387)
490 PRK08641 sdhA succinate dehydr 95.9 0.13 2.9E-06 52.3 12.7 32 162-193 3-34 (589)
491 PRK08626 fumarate reductase fl 95.8 0.14 3E-06 52.7 12.7 47 212-259 166-217 (657)
492 PRK08071 L-aspartate oxidase; 95.8 0.077 1.7E-06 53.0 10.6 45 217-262 142-190 (510)
493 TIGR02352 thiamin_ThiO glycine 95.8 0.052 1.1E-06 50.9 8.9 59 202-262 135-193 (337)
494 PF13434 K_oxygenase: L-lysine 95.7 0.03 6.5E-07 52.6 6.9 102 164-265 4-162 (341)
495 PRK07395 L-aspartate oxidase; 95.7 0.084 1.8E-06 53.1 10.4 51 210-260 140-195 (553)
496 PRK12834 putative FAD-binding 95.5 0.3 6.5E-06 49.3 13.7 33 163-195 5-37 (549)
497 KOG1346 Programmed cell death 95.5 0.027 5.9E-07 52.4 5.5 101 5-127 347-451 (659)
498 KOG2755 Oxidoreductase [Genera 95.5 0.014 3E-07 50.9 3.4 91 165-264 2-106 (334)
499 TIGR01176 fum_red_Fp fumarate 95.4 0.25 5.4E-06 50.1 12.7 43 217-260 146-193 (580)
500 PRK05335 tRNA (uracil-5-)-meth 95.4 0.025 5.4E-07 54.1 5.1 35 163-197 3-37 (436)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.4e-54 Score=415.53 Aligned_cols=391 Identities=27% Similarity=0.410 Sum_probs=326.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
+..+|||||||+||++||..|++.+. ..+|+|++++ ..+|.++.+++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 35789999999999999999999885 5679999999 8889998888766543221110 123456778
Q ss_pred hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCC
Q 013952 83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 162 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 162 (433)
+.+++++.++.|..++++.+.|.+.++.++.||+||||||+.|+.++ +++....++++++++.++..+.+.+. .+
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p---~~~~~~~~v~~~~~~~da~~l~~~~~--~~ 144 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP---LLDALGERCFTLRHAGDAARLREVLQ--PE 144 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC---CCCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence 89999999989999999999999999989999999999999997766 34445578999999999988887765 47
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 242 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~ 242 (433)
++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++.+.+.+.+.+++.||++++++.++++.. ++. ..+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~ 221 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT 221 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence 8999999999999999999999999999999998887667889999999999999999999999999975 332 4577
Q ss_pred eCCCcEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHH
Q 013952 243 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 321 (433)
Q Consensus 243 ~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g 321 (433)
+.+|+++++|.+|+++|.+||+.++. .++.. +++|.||++|||+.|||||+|||+..+.. .+...+.++|..|..||
T Consensus 222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA 299 (396)
T ss_pred ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence 88898999999999999999998764 34544 46799999999999999999999987766 67666678999999999
Q ss_pred HHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE-EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952 322 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 400 (433)
Q Consensus 322 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~ 400 (433)
++||+||++.. .+|..+|++|+.++++.++.+|....+. +..++.. ...|..++.++|+|+|+.++| ..
T Consensus 300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~-~~ 369 (396)
T PRK09754 300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLN-QG 369 (396)
T ss_pred HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEEC-CH
Confidence 99999999753 5678899999999999999999765544 3344422 344666677899999999998 56
Q ss_pred HHHHHHHHHHHcCCCCCChhhhcccCC
Q 013952 401 EENKAIAKVARVQPSVESLDVLKNEGL 427 (433)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (433)
.+...+..+|+.+.++ +.+.|.++.+
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 370 REIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 7888889999999887 6777877754
No 2
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.2e-55 Score=413.14 Aligned_cols=392 Identities=23% Similarity=0.284 Sum_probs=303.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCCC----CC---CCcccccC-
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGTA----RL---PGFHVCVG- 70 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~- 70 (433)
.+||+||||+||+|..||.++++.|.+ |+++|+. . |....|.++|.++...... +. .++.....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~ 79 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPK 79 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCC
Confidence 479999999999999999999999987 9999998 2 5556677777776554321 11 11111100
Q ss_pred --------------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC--CcEEecceEEEccCCCccccCCCCCC
Q 013952 71 --------------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFGVE 134 (433)
Q Consensus 71 --------------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lvlAtG~~~~~~~~~~~~ 134 (433)
.........+++..+++++.++..+. +.++|.+.+ .++++++++|||||++|+.|+. +
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~---~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~---~ 153 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFV---DPHTVEVTGEDKETITADNIIIATGSRPRIPPG---P 153 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEEC---CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC---C
Confidence 00112233345567999999855443 367777665 4789999999999999999984 5
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 214 (433)
Q Consensus 135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l 214 (433)
+.+...+++.++...... .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.|
T Consensus 154 ~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l 224 (454)
T COG1249 154 GIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQL 224 (454)
T ss_pred CCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHH
Confidence 555455665554332222 4899999999999999999999999999999999999997 8999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 288 (433)
Q Consensus 215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 288 (433)
++.|+++++++.+++++..+++ ..+.+.+|+ ++++|.+++|+|++||++-+ +.++.. ++|+|.||++++|++
T Consensus 225 ~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnv 302 (454)
T COG1249 225 EKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNV 302 (454)
T ss_pred HhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCC
Confidence 9999999999999999874444 577777775 79999999999999999843 567887 458999998888999
Q ss_pred CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc----
Q 013952 289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---- 364 (433)
Q Consensus 289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~---- 364 (433)
|||||+|||++.++ +...|..||++|++||++. .....+|..+|+++++.|+++++ |+++.+
T Consensus 303 p~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d~~~iP~~ift~Peia~V--Glte~ea~~~ 368 (454)
T COG1249 303 PGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPIDYRLIPSVVFTDPEIASV--GLTEEEAKEA 368 (454)
T ss_pred CCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCcccCCCEEEECCCcceee--eCCHHHHHhc
Confidence 99999999998874 4566889999999999982 22347899999999999999888 666422
Q ss_pred --EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCc
Q 013952 365 --TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 429 (433)
Q Consensus 365 --~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (433)
.+..+..+.. .++.+|.|+++ ++++|||+|++|+.++|+ +.++.+|+.+++.+|+....-+-+++
T Consensus 369 g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 369 GIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred CCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 2333322222 34578999888 579999999999999996 99999999999888666544444443
No 3
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.7e-52 Score=380.39 Aligned_cols=400 Identities=53% Similarity=0.895 Sum_probs=359.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
...++|||+|++|..|+.++++.+. ..+++++.++ ..||.++.+++.+. ..+.....+..+|+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhh
Confidence 4689999999999999999999986 5678998878 88888877665443 3344446778889999
Q ss_pred CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952 84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 163 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (433)
.++++++++.|+.+|...++|.+.+|+++.|++|+||||+.++.++ +||.+.++++++++.+++..+...+.. ..
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~~--~~ 214 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQL--GG 214 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhcc--Cc
Confidence 9999999999999999999999999999999999999999999888 578888999999999999988887763 67
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 243 (433)
+++++|+|++|+|+|..|...+.+||++.+.+..+++.+.+.+.+.+++.++++||++++++.+.+++.+++|++..|.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l 294 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL 294 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhcccc-cCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHH
Q 013952 244 KDGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 322 (433)
Q Consensus 244 ~~g~~i~~d~vi~a~G~~p~~~~~~~~~~-~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~ 322 (433)
.+|++++||+|++.+|.+|++.+++.+.. ..+|+|.||+++||++|||||+||++..|...++..++.+|++.|..+|+
T Consensus 295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 99999999999999999999999975443 37899999999999999999999999999988887777899999999999
Q ss_pred HHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHH
Q 013952 323 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE 402 (433)
Q Consensus 323 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~ 402 (433)
.+...|..... ..++++|+||+..++..|...|...++.+.+|+.+ ...|+.+|++ +..+++.+-+....+
T Consensus 375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~ 445 (478)
T KOG1336|consen 375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE 445 (478)
T ss_pred hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence 88877776543 23889999999999999999998888899999988 4459999999 999999998877777
Q ss_pred HHHHHHHHHcCCCCCChhhhcccCCCcccc
Q 013952 403 NKAIAKVARVQPSVESLDVLKNEGLSFASK 432 (433)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (433)
.+.++.++++|+.+..++.+...+.+|+..
T Consensus 446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~ 475 (478)
T KOG1336|consen 446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT 475 (478)
T ss_pred HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence 899999999999999888898888888764
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.3e-51 Score=395.56 Aligned_cols=389 Identities=19% Similarity=0.227 Sum_probs=293.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCC-HhHHHhC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEK 84 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (433)
+|||||||+||++||..|++.+ +..+|+|||++ ...|.+|.+....- . ...... ...... ..+.++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~--~---~~~~~~-----~~~~~~~~~~~~~~ 71 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG--E---VVEDRK-----YALAYTPEKFYDRK 71 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc--C---ccCCHH-----HcccCCHHHHHHhC
Confidence 7999999999999999999875 35679999999 66666544332110 0 000000 001112 3444668
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCC---c--EEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952 85 GIELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 159 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~ 159 (433)
+++++.+++|..||+++++|.+.++ . +++||+||||||+.|+.|+ ++ ..++++++++.++..+.+.+..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhh
Confidence 9999988899999999999887653 2 4789999999999997655 23 3678888999999888888766
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239 (433)
Q Consensus 160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 239 (433)
..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++++.+++. .
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~ 218 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------N 218 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------C
Confidence 56899999999999999999999999999999999888765 7999999999999999999999999999964 2
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHH
Q 013952 240 EVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 317 (433)
Q Consensus 240 ~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A 317 (433)
.+.+.+|+++++|.+++|+|++||+++++. ++.. ++|+|.||+++||+.|||||+|||+..+....+.+...+.+..|
T Consensus 219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A 298 (438)
T PRK13512 219 EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA 298 (438)
T ss_pred EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence 466778888999999999999999987753 4665 56889999999999999999999997554333333333566778
Q ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcEE----EEcCC-----Cc--cccCCcEEEEEE-
Q 013952 318 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV----LFGDN-----DL--ASATHKFGTYWI- 385 (433)
Q Consensus 318 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~----~~~~~-----~~--~~~~~~~~~~~~- 385 (433)
.++|+++|+||.+... .....+..+|.+.+. +..+..+|+++.+.. ..... .. ...+.+|.|+++
T Consensus 299 ~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~--~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d 375 (438)
T PRK13512 299 HRAASIVAEQIAGNDT-IEFKGFLGNNIVKFF--DYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD 375 (438)
T ss_pred HHHHHHHHHHhcCCCc-cccCCcccceEEEEc--CceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEE
Confidence 8999999999986421 111133345554444 444555577753211 11111 10 123467888877
Q ss_pred -eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhh
Q 013952 386 -KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL 422 (433)
Q Consensus 386 -~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~ 422 (433)
++++|||+|++|++ ++| ++.++.+|+.++|++|+..+
T Consensus 376 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~ 415 (438)
T PRK13512 376 TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEF 415 (438)
T ss_pred CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 57999999999986 676 59999999999999987765
No 5
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.1e-50 Score=395.82 Aligned_cols=404 Identities=21% Similarity=0.267 Sum_probs=306.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|||||||+||+++|.+|++.+. ..+|+|||++ ...|..+.+.. +.... ...+ ........+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence 79999999999999999999763 4569999999 44444332221 00000 0000 011234566778889
Q ss_pred cEEEeCceEEEEECCCCEEEeCC---CcEEe--cceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc
Q 013952 86 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 160 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (433)
++++.+++|+.|+++++.+.+.+ +.++. ||+||+|||++|..|+ ++|.+.++++++++..++.++.+.+.+.
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 99998889999999999887754 55666 9999999999998776 5777667899999998888888888765
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 240 (433)
.+++++|+|+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++++.++.. ++....
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 689999999999999999999999999999999888877557999999999999999999999999999965 455555
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHH
Q 013952 241 VKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 318 (433)
Q Consensus 241 v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~ 318 (433)
+.+.++ ++++|.+++|+|++|+.++++ .++.. ++|+|.||+++||+.|||||+|||+..+....+.+...+++..|.
T Consensus 226 v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 655544 799999999999999988775 45665 568899999999999999999999998766555544557889999
Q ss_pred HHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE------EEEcC---CCc----cccCCcEEEEEE
Q 013952 319 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------VLFGD---NDL----ASATHKFGTYWI 385 (433)
Q Consensus 319 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~------~~~~~---~~~----~~~~~~~~~~~~ 385 (433)
+||+++|+||.+.... .+....+ ....+++..+..+|.++.+. +.... ... .....+|.|+++
T Consensus 305 ~qg~~~a~ni~g~~~~---~~~~~~~-~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~ 380 (444)
T PRK09564 305 KLGRMVGENLAGRHVS---FKGTLGS-ACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY 380 (444)
T ss_pred HHHHHHHHHhcCCCCC---CCCcccc-eEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence 9999999999975321 2222222 22234556666668775311 11111 110 123467888887
Q ss_pred --eCCEEEEEEEecCC-hHH-HHHHHHHHHcCCCCCChhhhcccC-CCccc
Q 013952 386 --KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 431 (433)
Q Consensus 386 --~~~~l~G~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 431 (433)
++++|+|+|++|+. +.+ ++.++.+|++++|++|+..+..+. ++|++
T Consensus 381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 68999999999986 666 599999999999999776555444 44443
No 6
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=5.6e-52 Score=405.61 Aligned_cols=398 Identities=19% Similarity=0.269 Sum_probs=290.3
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC------CCCCCcccc--
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT------ARLPGFHVC-- 68 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 68 (433)
|||.+|||+||||||||++||.+|+++|++ |+|+|+. .+.+..|..++.++..... ....++...
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788889999999999999999999999987 9999987 2334444455443321100 000111100
Q ss_pred cCCC--------------CCCCCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC
Q 013952 69 VGSG--------------GERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 133 (433)
Q Consensus 69 ~~~~--------------~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~ 133 (433)
...+ .......++++. +++++.++.+. .+.++|.+ ++.+++||+||||||++|+.|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i 150 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I 150 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence 0000 011233455565 99999886543 34667766 4567999999999999998887 5
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952 134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 213 (433)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~ 213 (433)
||.+...+++..+..+.. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~ 221 (463)
T PRK06370 151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI 221 (463)
T ss_pred CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence 776655666544332211 14789999999999999999999999999999999998886 789999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952 214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 288 (433)
Q Consensus 214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 288 (433)
+++.||++++++++.+++..+++....+... ++.++++|.||+|+|++|+++.+ +.++.. .+|+|.||++|||+.
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~ 301 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN 301 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence 9999999999999999987333322233332 34579999999999999999832 345655 568899999999999
Q ss_pred CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952 289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 362 (433)
Q Consensus 289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 362 (433)
|+|||+|||++.+ .....|..||++||+||++... ....+..+|++.+..++++.+ |+++
T Consensus 302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~ia~v--G~te~~a~~~ 367 (463)
T PRK06370 302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDRIVPYATYTDPPLARV--GMTEAEARKS 367 (463)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccccCCeEEEcCCCcEee--eCCHHHHHHc
Confidence 9999999998765 4567789999999999987522 125566788877666655544 6664
Q ss_pred CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 363 GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 363 ~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
+..+..+..+.. ...++|.|+++ ++++|||+|++|+.++|+ +.++.+|++++|++||..+.-+-+++++
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 222222222111 23568899888 589999999999999885 9999999999999977776666555543
No 7
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.6e-51 Score=403.01 Aligned_cols=397 Identities=18% Similarity=0.199 Sum_probs=291.8
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC----CCCCCc---ccc
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT----ARLPGF---HVC 68 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~----~~~~~~---~~~ 68 (433)
|++.+|||+||||||+|++||.+|++.|++ |+|||+. . +.+..|..++.+...... ...+.+ ...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 788889999999999999999999999987 9999985 1 223333333332211000 000000 000
Q ss_pred cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCC
Q 013952 69 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG 132 (433)
Q Consensus 69 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~ 132 (433)
...+ ........+++.+++++.+ .+..++.....+...++. +++||+||||||+.|..|+.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0012234456789999987 555566544455555554 79999999999999988874
Q ss_pred CCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHH
Q 013952 133 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 212 (433)
Q Consensus 133 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~ 212 (433)
++.+..++++..++.+.. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 155 -~~~~~~~v~~~~~~~~~~-------~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 224 (461)
T PRK05249 155 -VDFDHPRIYDSDSILSLD-------H-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY 224 (461)
T ss_pred -CCCCCCeEEcHHHhhchh-------h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence 444445565443322211 1 4799999999999999999999999999999999998886 89999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCC
Q 013952 213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 288 (433)
Q Consensus 213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 288 (433)
.+++.||+++++++++++...+++ ..+.+.+|+++++|.+++|+|++||++++ ..++.. ++|++.||+++||+.
T Consensus 225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 302 (461)
T PRK05249 225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV 302 (461)
T ss_pred HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence 999999999999999999863332 45667778889999999999999999854 345665 568899999999999
Q ss_pred CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-----
Q 013952 289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG----- 363 (433)
Q Consensus 289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~----- 363 (433)
|+|||+|||++.+ ..+..|..+|++||.||++... ...+..+|+++++.|+++.+ |+++.
T Consensus 303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~ 367 (461)
T PRK05249 303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA 367 (461)
T ss_pred CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence 9999999999755 4577899999999999986432 25677899999888877655 66642
Q ss_pred -cEEEEcC-----CCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 364 -DTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 364 -~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
..+..+. .... ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++|+..+.-+-++++
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 446 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMA 446 (461)
T ss_pred CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 2122221 1111 23567888887 579999999999999885 999999999999997766655555544
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=4.6e-51 Score=396.02 Aligned_cols=393 Identities=17% Similarity=0.223 Sum_probs=287.6
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccC--C--
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVG--S-- 71 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~-- 71 (433)
++|||+||||||||++||..|++.|++ |+|||+. .+....|.+++.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999988 9999987 2344445555543322110 00000000000 0
Q ss_pred --------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcccc-CCCCCCCC
Q 013952 72 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA 136 (433)
Q Consensus 72 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~-~~~~~~g~ 136 (433)
.........+++.+++++.++.+. .+.++|.+ ++++++||+||||||++|+.| + +||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~ 150 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA 150 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence 000112334556799999986543 24566665 556799999999999999877 5 5664
Q ss_pred CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952 137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 216 (433)
Q Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~ 216 (433)
+. .+ +.++...+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+++.+++
T Consensus 151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~ 219 (450)
T TIGR01421 151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK 219 (450)
T ss_pred ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence 31 12 222222211 1 3789999999999999999999999999999999988876 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 291 (433)
Q Consensus 217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v 291 (433)
.||++++++.++++..+.++ ...+.+.+| +.+++|.|++++|++||++++ ..++.. ++|++.||+++||++|+|
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence 99999999999999863233 245677777 579999999999999999853 345665 568899999999999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCcE------
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT------ 365 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~------ 365 (433)
||+|||++.+ ..+..|.+||+.+|+||++... ..+..+..+|++.+..|+++.+ |+++.+.
T Consensus 299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~ 365 (450)
T TIGR01421 299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK 365 (450)
T ss_pred EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence 9999999765 3567889999999999986431 1235678899988887877766 6554211
Q ss_pred --EEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 366 --VLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 366 --~~~~~~~--~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
+.....+ +. ...++|.|+++ ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T TIGR01421 366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444 (450)
T ss_pred CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 2111111 11 24567888877 589999999999999996 9999999999999987776655555543
No 9
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.1e-50 Score=395.42 Aligned_cols=394 Identities=21% Similarity=0.239 Sum_probs=290.3
Q ss_pred CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC----CC-CCCcccccCC--
Q 013952 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT----AR-LPGFHVCVGS-- 71 (433)
Q Consensus 3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~-- 71 (433)
+.+|||+||||||||++||..|+++|++ |+|||+. . +....|.+++.++..... .. .+.+......
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENK 78 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCC
Confidence 4579999999999999999999999988 9999987 2 334445555543332110 00 0000000000
Q ss_pred ---------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCC
Q 013952 72 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 136 (433)
Q Consensus 72 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~ 136 (433)
.........+.+.+++++.+ .+..++ .++|.+ ++++++||+||||||++|..|+ ++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g~ 151 (450)
T PRK06116 79 FDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPGA 151 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCCc
Confidence 00011223355679999997 555554 467777 6778999999999999998877 5654
Q ss_pred CCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh
Q 013952 137 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 216 (433)
Q Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~ 216 (433)
+ .+++.. +...+ .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus 152 ~--~~~~~~---~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~ 220 (450)
T PRK06116 152 E--YGITSD---GFFAL----EE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK 220 (450)
T ss_pred c--eeEchh---HhhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH
Confidence 3 233222 22111 11 4789999999999999999999999999999999888775 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 292 (433)
Q Consensus 217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf 292 (433)
.||+++++++|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++||||
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Iy 299 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIY 299 (450)
T ss_pred CCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEE
Confidence 999999999999998733432 35777888899999999999999999843 345666 5688999999999999999
Q ss_pred EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-------c-
Q 013952 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------D- 364 (433)
Q Consensus 293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~- 364 (433)
|+|||++.+ .++..|..||+.+|+||++.... ....|..+|+.+++.|+++.+ |+++. +
T Consensus 300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~~ 366 (450)
T PRK06116 300 AVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGED 366 (450)
T ss_pred EEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCCC
Confidence 999998654 46778999999999999874321 135778899988887777666 65542 1
Q ss_pred EEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 365 TVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 365 ~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
.+.....+.. ..+++|.|+++ ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 1222222111 24578999888 579999999999999885 9999999999999987776655555543
No 10
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.2e-50 Score=393.69 Aligned_cols=392 Identities=21% Similarity=0.277 Sum_probs=289.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccCC-----
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVGS----- 71 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 71 (433)
+|||+||||||||++||..++++|++ |+|+|+. .+....|.+++.++..... .+.+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 59999999999999999999999988 9999986 2344455556544332211 011111100000
Q ss_pred ------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCC
Q 013952 72 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 139 (433)
Q Consensus 72 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 139 (433)
.....+...+++.+++++.+ ++..+++....+. .++++++||+||||||++|..|+ +||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~- 152 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL- 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence 01122344566789999987 7777776433332 45678999999999999998777 566431
Q ss_pred CEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCc
Q 013952 140 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219 (433)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV 219 (433)
.+ +..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus 153 -~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (446)
T TIGR01424 153 -GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI 222 (446)
T ss_pred -ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence 22 222222221 1 4789999999999999999999999999999999988876 789999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEcC
Q 013952 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG 295 (433)
Q Consensus 220 ~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~G 295 (433)
++++++++.++...+++ ..+.+.+|+++++|.+++|+|++|+++.+ ..++.. ++|+|.||+++||+.|||||+|
T Consensus 223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G 300 (446)
T TIGR01424 223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 (446)
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence 99999999999863333 45677788889999999999999999853 345655 5688999999999999999999
Q ss_pred ccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-------cEEEE
Q 013952 296 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------DTVLF 368 (433)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~~~~~ 368 (433)
||++.+ ..+..|.+||++++.||++... .+.++..+|+.+++.|+++.+ |+++. ..+..
T Consensus 301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~ 366 (446)
T TIGR01424 301 DVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV 366 (446)
T ss_pred ccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence 999754 4567899999999999987432 125667899988887876666 66542 22222
Q ss_pred cCCCc--------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 369 GDNDL--------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 369 ~~~~~--------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
...+. ....++|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++|+..+.-+-+++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 440 (446)
T TIGR01424 367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAE 440 (446)
T ss_pred EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHH
Confidence 21111 123468899887 589999999999999885 9999999999999977766555555543
No 11
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.8e-50 Score=393.90 Aligned_cols=392 Identities=19% Similarity=0.228 Sum_probs=289.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC----------C----CCCCCCCCccccccCCCCC----CCCCCcc
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK----------E----VAPYERPALSKAYLFPEGT----ARLPGFH 66 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~----------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~ 66 (433)
+||++||||||+|+.||..++++|++ |+|||+ . .+.+..|.+++.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999998 999996 1 2334445555655332211 0000000
Q ss_pred cccCCC------------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCcc
Q 013952 67 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 126 (433)
Q Consensus 67 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~ 126 (433)
...... ........+...+++++.+ .+..+++....|...+++ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0011223345579999997 777788777777777775 5899999999999998
Q ss_pred ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHH
Q 013952 127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 206 (433)
Q Consensus 127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~ 206 (433)
.|+ +||.+ ..+ +..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++
T Consensus 181 ~p~---ipG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 181 RPN---IPGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCC---CCCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 777 56643 122 233333322 1 3789999999999999999999999999999999888875 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCC
Q 013952 207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 282 (433)
Q Consensus 207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 282 (433)
.+.+.+.+++.||+++++++|++++..+++ ..+.+.+|+++++|.|++++|++||+.++ ..++.. ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863222 45677788889999999999999999864 345666 568899999
Q ss_pred CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952 283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362 (433)
Q Consensus 283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 362 (433)
++||+.|||||+|||++.+ .++..|.+||++++.||++... ....+..+|+.+++.|+++.+ |+++
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~--~~~~~~~~p~~if~~p~ia~v--Glte 390 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP--TKPDYENVACAVFCIPPLSVV--GLSE 390 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--CcCCCCCCCeEEECCCccEEE--eCCH
Confidence 9999999999999999754 3567889999999999986532 124567789888887777665 6654
Q ss_pred C-------cEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcc
Q 013952 363 G-------DTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN 424 (433)
Q Consensus 363 ~-------~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 424 (433)
. ..+.....+.. ...++|.|+++ ++++|||+|++|++++++ +.++.||+.++|++|+..+.-
T Consensus 391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~ 470 (499)
T PLN02507 391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG 470 (499)
T ss_pred HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence 2 11222211111 12457888887 589999999999998885 999999999999997776555
Q ss_pred cCCCcc
Q 013952 425 EGLSFA 430 (433)
Q Consensus 425 ~~~~~~ 430 (433)
+-++++
T Consensus 471 ~hPt~~ 476 (499)
T PLN02507 471 IHPSAA 476 (499)
T ss_pred CCCChH
Confidence 555444
No 12
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.1e-50 Score=391.15 Aligned_cols=395 Identities=18% Similarity=0.210 Sum_probs=286.2
Q ss_pred CCCC-cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----C------CCC--
Q 013952 1 MAEK-SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----A------RLP-- 63 (433)
Q Consensus 1 Mm~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~------~~~-- 63 (433)
||+. .|||+||||||||++||..|++.|++ |+|||++ .+....|.+++.++..... . .++
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 6654 69999999999999999999999987 9999987 1333334444443211100 0 010
Q ss_pred --Ccccc--c--CC----CCCC-CCHhHHHh-CCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccC
Q 013952 64 --GFHVC--V--GS----GGER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT 129 (433)
Q Consensus 64 --~~~~~--~--~~----~~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~ 129 (433)
.+.+. . .. .... .....+.+ .+++++.+ ++..+++....|.+.++ .+++||+||||||++|+.|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 00000 0 00 0000 01222333 38999997 78888888888887776 37999999999999998887
Q ss_pred CCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHH
Q 013952 130 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 209 (433)
Q Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~ 209 (433)
+||.+...+++.. +...+ .. .+++++|||+|++|+|+|..|.+.|.+|+++.+ +++++. +++++.+.
T Consensus 157 ---i~G~~~~~~~~~~---~~~~l----~~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~ 223 (468)
T PRK14694 157 ---VPGLAETPYLTST---SALEL----DH-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA 223 (468)
T ss_pred ---CCCCCCCceEcch---hhhch----hc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence 5665443444332 22222 11 478999999999999999999999999999986 456665 78999999
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCC
Q 013952 210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKT 286 (433)
Q Consensus 210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t 286 (433)
+++.+++.||++++++.+.+++. ++....+.+.++ ++++|.+++|+|++||+.++ ..++..++|+|.||+++||
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T 300 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDY--NGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT 300 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEE--cCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence 99999999999999999999986 333344555554 79999999999999999865 2345557788999999999
Q ss_pred CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC----
Q 013952 287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 362 (433)
Q Consensus 287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 362 (433)
++|+|||+|||+..+ ..+..|..+|++||.||++... ..++..+|.+++..|+++.+ |+++
T Consensus 301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~ 365 (468)
T PRK14694 301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQVATV--GLSEAEAQ 365 (468)
T ss_pred CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCeEEe--eCCHHHHH
Confidence 999999999999765 3466788999999999986532 25667788887766665555 7664
Q ss_pred --CcEEEEcCCC-----c---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCc
Q 013952 363 --GDTVLFGDND-----L---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 429 (433)
Q Consensus 363 --~~~~~~~~~~-----~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (433)
+..+.....+ . .....+|.|+++ ++++|||+|++|+.++|+ +.++.||++++|++||..+.-+-+++
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 445 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM 445 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence 2122111111 1 123567999887 589999999999998885 99999999999999777666555554
Q ss_pred c
Q 013952 430 A 430 (433)
Q Consensus 430 ~ 430 (433)
+
T Consensus 446 ~ 446 (468)
T PRK14694 446 V 446 (468)
T ss_pred H
Confidence 4
No 13
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.7e-50 Score=392.83 Aligned_cols=395 Identities=19% Similarity=0.207 Sum_probs=280.7
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC----CCCCCcccccCC-
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT----ARLPGFHVCVGS- 71 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~- 71 (433)
|+.+|||+||||||+|++||..|++.|++ |+|||+. . +....|.+++.++..... .+...+......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 34569999999999999999999999988 9999975 1 333334555544421110 000000000000
Q ss_pred ----------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCC
Q 013952 72 ----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 133 (433)
Q Consensus 72 ----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~ 133 (433)
.........+++.+++++.+. +..++...-.|...++ .+++||+||||||++|+.++. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~--~ 154 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF--I 154 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC--C
Confidence 000112234566799999974 4444432222333455 479999999999999975543 3
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952 134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 213 (433)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~ 213 (433)
++ +...+++. .++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 155 ~~-~~~~v~~~---~~~~~~~----~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~ 224 (471)
T PRK06467 155 PH-DDPRIWDS---TDALELK----E-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKR 224 (471)
T ss_pred CC-CCCcEECh---HHhhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence 33 33445433 2332221 1 4789999999999999999999999999999999999887 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCC
Q 013952 214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFK 285 (433)
Q Consensus 214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~ 285 (433)
+++. |++++++.+++++..+++ ..+.+.+ + +++++|.|++++|++||++++ ..++.. ++|+|.||+++|
T Consensus 225 l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~ 301 (471)
T PRK06467 225 IKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR 301 (471)
T ss_pred Hhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc
Confidence 9988 999999999999863333 3454433 2 469999999999999999854 345666 578899999999
Q ss_pred CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC--
Q 013952 286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-- 363 (433)
Q Consensus 286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-- 363 (433)
|+.|+|||+|||++.+ ..+..|.++|+.||.||.+... ..++..+|++++..|+++.+ |+++.
T Consensus 302 t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~ea 366 (471)
T PRK06467 302 TNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPEVAWV--GLTEKEA 366 (471)
T ss_pred cCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCceeEE--ECCHHHH
Confidence 9999999999999755 4577899999999999987532 25667788887655555544 76652
Q ss_pred ----cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952 364 ----DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS 428 (433)
Q Consensus 364 ----~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (433)
..+..+..+ .. ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++|+..+.-+-++
T Consensus 367 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt 446 (471)
T PRK06467 367 KEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPT 446 (471)
T ss_pred HhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCC
Confidence 122222111 11 23567898888 579999999999999885 9999999999999988877555555
Q ss_pred cc
Q 013952 429 FA 430 (433)
Q Consensus 429 ~~ 430 (433)
|+
T Consensus 447 ~~ 448 (471)
T PRK06467 447 LH 448 (471)
T ss_pred hH
Confidence 44
No 14
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.1e-49 Score=388.51 Aligned_cols=400 Identities=18% Similarity=0.207 Sum_probs=289.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCC------CCCcccccCC---
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTAR------LPGFHVCVGS--- 71 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--- 71 (433)
+||++|||||+||++||..+++.|.+ |+|||++ .+....|.++|.++....... ..++......
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 68999999999999999999999987 9999987 355666777777665443211 0011100000
Q ss_pred -----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEE----------------------------EeCCCcEE
Q 013952 72 -----------GGERLLPEWYKEKGIELILSTEIVRADIASKTL----------------------------LSATGLIF 112 (433)
Q Consensus 72 -----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v----------------------------~~~~~~~~ 112 (433)
.......+.+++.+|+++.+...+. +.++| ...++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i 201 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence 0011233445668999999865332 12222 12466789
Q ss_pred ecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc
Q 013952 113 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 192 (433)
Q Consensus 113 ~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~ 192 (433)
+||+||||||++|..|+ ++|.+ .+++. .+...+ . .+++++|||+|++|+|+|..|.+.|.+|++++
T Consensus 202 ~ad~lVIATGS~P~~P~---IpG~~--~v~ts---~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~ 267 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPD---VKGKE--FTISS---DDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFA 267 (561)
T ss_pred ECCEEEEecCCCCCCCC---CCCce--eEEEH---HHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 99999999999998877 56643 23332 222221 1 37899999999999999999999999999999
Q ss_pred cCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhhc--
Q 013952 193 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFKG-- 269 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~~-- 269 (433)
+.+++++. +++++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++|+++.+..
T Consensus 268 ~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~ 345 (561)
T PTZ00058 268 RGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKA 345 (561)
T ss_pred eccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccc
Confidence 99988875 7999999999999999999999999999986333333 334434 457999999999999999987642
Q ss_pred -ccccCCCcEEeCCCCCCCCCCeEEcCcccccccc-----------------------ccCccc-ccccHHHHHHHHHHH
Q 013952 270 -QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQA 324 (433)
Q Consensus 270 -~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~a 324 (433)
++..++|+|.||+++||+.|+|||+|||++.++. ..+.+. ..+++..|.+||+++
T Consensus 346 ~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a 425 (561)
T PTZ00058 346 LNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL 425 (561)
T ss_pred cceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence 2333678899999999999999999999984321 122232 357888999999999
Q ss_pred HHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc--------EEEEcCCCc------------cccCCcEEEEE
Q 013952 325 VKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--------TVLFGDNDL------------ASATHKFGTYW 384 (433)
Q Consensus 325 a~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~--------~~~~~~~~~------------~~~~~~~~~~~ 384 (433)
|.||++.... ..++..+|+.++..|+++.+ |+++.+ .+.....+. .....+|.|++
T Consensus 426 a~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli 501 (561)
T PTZ00058 426 ADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV 501 (561)
T ss_pred HHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEE
Confidence 9999875321 24677899988877777666 665421 122211111 11245788888
Q ss_pred E--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 385 I--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 385 ~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
+ ++++|+|+|++|++++|+ +.++.||++++|++|+..+.-+-++++
T Consensus 502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~ 550 (561)
T PTZ00058 502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAA 550 (561)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChH
Confidence 7 589999999999999885 999999999999997776655555544
No 15
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.2e-48 Score=393.88 Aligned_cols=389 Identities=20% Similarity=0.336 Sum_probs=305.0
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCH
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLP 78 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (433)
|| +.+|||||+|+||+.+|..|++.+. +..+|+||+++ ..+|.++.++..+.. .... .......
T Consensus 1 m~--~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~-----------~l~~~~~ 66 (847)
T PRK14989 1 MS--KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAE-----------ELSLVRE 66 (847)
T ss_pred CC--CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHH-----------HccCCCH
Confidence 55 3589999999999999999987642 34569999999 788888777653321 1111 1123456
Q ss_pred hHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH
Q 013952 79 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 158 (433)
Q Consensus 79 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~ 158 (433)
+++++.+++++.++.|+.|+++.+.|.+.++.+++||+||||||+.|+.|+ +||.+..+++.++++.++..+.+.+.
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~ 143 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR 143 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh
Confidence 788899999999999999999999999989989999999999999999887 67877788999999999988877765
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE
Q 013952 159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 238 (433)
Q Consensus 159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~ 238 (433)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++..++++..+.+++.+++.||++++++.++++..+.++..
T Consensus 144 --~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~ 221 (847)
T PRK14989 144 --RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR 221 (847)
T ss_pred --cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCce
Confidence 478999999999999999999999999999999999888668999999999999999999999999999976333455
Q ss_pred EEEEeCCCcEEECCEEEEcccCccChhhhh-ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHH
Q 013952 239 KEVKLKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 316 (433)
Q Consensus 239 ~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~ 316 (433)
..+.+.+|+++++|.||+|+|++||++++. .++.. ++|+|.||++|||+.|+|||+|||+......+ .++..
T Consensus 222 ~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~ 295 (847)
T PRK14989 222 KTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAP 295 (847)
T ss_pred EEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHH
Confidence 678889999999999999999999999874 46766 56899999999999999999999998865432 46788
Q ss_pred HHHHHHHHHHHHhccCCCCCccCCCCC-CeEEEeecccceEEecCCCCc-----EEEEcCCCccccCCcEEEEEE--eCC
Q 013952 317 ARKSAEQAVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDG 388 (433)
Q Consensus 317 A~~~g~~aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 388 (433)
|..+|++||.||.+.. ..|... .....+.+++.+..+|...+. .+.+-+. ....|.|+++ +++
T Consensus 296 a~~~a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~----~~~~y~Klv~~~~~~ 366 (847)
T PRK14989 296 GYKMAQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDE----SKEIYKRLIVSEDNK 366 (847)
T ss_pred HHHHHHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEcC----CCCEEEEEEEECCCC
Confidence 9999999999998753 223321 122345566666666643221 1111111 1467899888 467
Q ss_pred EEEEEEEecCChHHHHHHHHHHHcCCCCCC-hhhhcc
Q 013952 389 KVVGVFLESGTPEENKAIAKVARVQPSVES-LDVLKN 424 (433)
Q Consensus 389 ~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 424 (433)
+|+|++++|+. ++...+..++.+++++.+ .+.|..
T Consensus 367 ~LlGa~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~ 402 (847)
T PRK14989 367 TLLGAVLVGDT-SDYGNLLQLVLNAIELPENPDSLIL 402 (847)
T ss_pred EEEEEEEECCH-HHHHHHHHHHHcCCCCccchhheec
Confidence 99999999954 445555555556766643 334444
No 16
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.7e-49 Score=385.85 Aligned_cols=393 Identities=20% Similarity=0.260 Sum_probs=286.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcC----------C---CCCCCCCCccccccCCCCC----CCCCCc
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISK----------E---VAPYERPALSKAYLFPEGT----ARLPGF 65 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~----------~---~~~~~~~~~~~~~~~~~~~----~~~~~~ 65 (433)
+.||++||||||+|..||..++++ |.+ |+|||+ . .|....|.++|.++..... .+...+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 469999999999999999999996 887 999996 1 3556667777766544311 011111
Q ss_pred ccccC--C---C--------------CCCCCHhHHHh-CCcEEEeCceEEEEECCCCEEEeCC--------CcEEecceE
Q 013952 66 HVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL 117 (433)
Q Consensus 66 ~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l 117 (433)
..... . + ........++. .+++++.+...+ + +.++|.+.+ .++++||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f-~--~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGAL-E--DKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEE-c--cCCEEEEeeccCCCCCcceEEECCEE
Confidence 00000 0 0 00112223444 489999985432 2 456665531 247999999
Q ss_pred EEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Q 013952 118 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE 194 (433)
Q Consensus 118 vlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~ 194 (433)
|||||++|..|+ +||.+ .+++ ..++..+ .. .+++++|||+|++|+|+|..|..+ |.+|+++++.
T Consensus 156 IIATGs~p~~p~---i~G~~--~~~~---~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 156 LLATGSWPQMLG---IPGIE--HCIS---SNEAFYL----DE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred EEecCCCCCCCC---CCChh--heec---hhhhhcc----cc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 999999998777 56643 2332 2222221 11 478999999999999999877655 9999999999
Q ss_pred CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccc
Q 013952 195 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQV 271 (433)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~ 271 (433)
+++++. +++++.+.+.+.|++.||++++++.++++...+++ ...+.+.+++++++|.+++|+|++|++.++ ..++
T Consensus 223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl 300 (486)
T TIGR01423 223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300 (486)
T ss_pred Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence 998875 89999999999999999999999999999863333 345677778889999999999999999865 3456
Q ss_pred cc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEee
Q 013952 272 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 350 (433)
Q Consensus 272 ~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 350 (433)
.. ++|+|.||+++||+.|||||+|||++.+ .....|.+||+++++||++... ....+..+|+++++.
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~--~~~~~~~vp~~vft~ 368 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKP--RKTDHTRVASAVFSI 368 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--cccCCCCCCEEEeCC
Confidence 66 5688999999999999999999999765 4566789999999999986432 124666789999888
Q ss_pred cccceEEecCCCCc------EEEEcCCCc--------c-ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHc
Q 013952 351 FDLSWQFYGDNVGD------TVLFGDNDL--------A-SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV 412 (433)
Q Consensus 351 ~~~~~~~~g~~~~~------~~~~~~~~~--------~-~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~ 412 (433)
|+++.+ |+++.+ .+.....+. . ...++|.|+++ ++++|||+|++|+.++|+ +.++.||++
T Consensus 369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~ 446 (486)
T TIGR01423 369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL 446 (486)
T ss_pred CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 876655 666521 111111110 0 11257888887 579999999999999885 999999999
Q ss_pred CCCCCChhhhcccCCCccc
Q 013952 413 QPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~ 431 (433)
++|++|+..+.-+-+++++
T Consensus 447 ~~t~~dl~~~~~~hPt~sE 465 (486)
T TIGR01423 447 NAKISDFYNTIGVHPTSAE 465 (486)
T ss_pred CCCHHHHhhcccCCCCcHH
Confidence 9999988877666655553
No 17
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3.8e-49 Score=382.32 Aligned_cols=382 Identities=18% Similarity=0.229 Sum_probs=280.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCC----CCC--Ccc-----cc-
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTA----RLP--GFH-----VC- 68 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~----~~~--~~~-----~~- 68 (433)
+||++||||||+|.+||.. ..|.+ |+|||++ .+.+..|.++|.++...... +.+ +.. ..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 45877 9999987 35666677777554332110 000 100 00
Q ss_pred ---------cCCCCCC-CCHhH-HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCC
Q 013952 69 ---------VGSGGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 137 (433)
Q Consensus 69 ---------~~~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 137 (433)
.-..... ....+ ++..+++++.+.... + +.++|.+.++++++||+||||||++|+.|+ +++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~---i~g~~ 149 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPP---VIADS 149 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCC---CCCcC
Confidence 0000011 12233 567899999985443 3 578888888888999999999999998887 46544
Q ss_pred CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952 138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 217 (433)
Q Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~ 217 (433)
...+++ ..++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus 150 ~~~~~~---~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~ 219 (451)
T PRK07846 150 GVRYHT---SDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK 219 (451)
T ss_pred CccEEc---hHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence 333433 333333221 4789999999999999999999999999999999988875 7899988887755 56
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEE
Q 013952 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYA 293 (433)
Q Consensus 218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa 293 (433)
||++++++++.+++.. ++ ...+.+.+|+++++|.|++|+|++|+++++ +.++.. ++|+|.||+++||+.|||||
T Consensus 220 ~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 220 RWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred CeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence 8999999999999862 22 245777788899999999999999999875 345666 57889999999999999999
Q ss_pred cCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEE
Q 013952 294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVL 367 (433)
Q Consensus 294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~ 367 (433)
+|||+..+ ++...|.+||++++.||++.... ...++..+|+++++.++++.+ |+++. ..+.
T Consensus 298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~ 364 (451)
T PRK07846 298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT 364 (451)
T ss_pred EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence 99999865 34567889999999999865211 125677889988876766655 66652 2222
Q ss_pred EcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh
Q 013952 368 FGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL 422 (433)
Q Consensus 368 ~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (433)
.+..+ .. ...++|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++||..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 430 (451)
T PRK07846 365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARG 430 (451)
T ss_pred EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 22111 11 23468888887 579999999999999885 9999999999999977654
No 18
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.9e-49 Score=385.99 Aligned_cols=394 Identities=25% Similarity=0.309 Sum_probs=282.2
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCCC----CCCCcccccCC----
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGTA----RLPGFHVCVGS---- 71 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---- 71 (433)
..|||+||||||||++||..|+++|++ |+|+|+. . +.+..|.+++.++...... ....+......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 469999999999999999999999987 9999987 1 3344455555443222110 00000000000
Q ss_pred -------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC-CcEEecceEEEccCCCccccCCCCCCCCC
Q 013952 72 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD 137 (433)
Q Consensus 72 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 137 (433)
.....+...+++.+++++.+ .+..+++....+...+ +++++||+||||||++|..|+. ++ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence 00011333456689999997 5556665444444323 3679999999999999875432 21 11
Q ss_pred CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952 138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 217 (433)
Q Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~ 217 (433)
...+++. .+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus 156 ~~~v~~~---~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~ 226 (462)
T PRK06416 156 GRVIWTS---DEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR 226 (462)
T ss_pred CCeEEcc---hHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 2234433 3332221 1 4689999999999999999999999999999999998886 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCCCCe
Q 013952 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV 291 (433)
Q Consensus 218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~v 291 (433)
||+++++++|.+++.++ + ...+.+.++ +++++|.+|+|+|++|++.++ ..++..++|++.||+++||+.|+|
T Consensus 227 gV~i~~~~~V~~i~~~~-~-~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTD-D-GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEeC-C-EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence 99999999999998732 2 244555555 679999999999999999865 345555678899999999999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 365 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 365 (433)
||+|||+..+ +.+..|..||+.+|.||.+... ..++..+|.+....++ +..+|.++. ..
T Consensus 305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~~~~~--~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTYTHPE--VASVGLTEAKAKEEGFD 369 (462)
T ss_pred EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCc--eEEEeCCHHHHHhcCCC
Confidence 9999999754 5678899999999999997431 2445667776655454 445576652 21
Q ss_pred EEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 366 VLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 366 ~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
+..... ... ....+|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++||..+..+-++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 445 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLS 445 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 211111 111 23567888877 589999999999999885 999999999999998887755555544
No 19
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.8e-49 Score=384.68 Aligned_cols=393 Identities=22% Similarity=0.257 Sum_probs=289.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCC--Cccc--------
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLP--GFHV-------- 67 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~--~~~~-------- 67 (433)
+|++|||||++|+.||..++++|.+ |+|+|++ .+....|.++|.++..... .+.. ++..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 4899999999999999999999987 9999987 2444455566655433100 0000 0000
Q ss_pred c----------cCCCCCCCCHhHHHhCCcEEEeCceEEEEE--CCCCE--EEeCCCc--EEecceEEEccCCCccccCCC
Q 013952 68 C----------VGSGGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF 131 (433)
Q Consensus 68 ~----------~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lvlAtG~~~~~~~~~ 131 (433)
. ..........+.+++.+++++.+ .+..++ .+.++ |...++. ++.||+||||||+.|..|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~- 156 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT- 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence 0 00000112345566789999998 455433 33444 4445664 79999999999999976653
Q ss_pred CCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHH
Q 013952 132 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 211 (433)
Q Consensus 132 ~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~ 211 (433)
++.....+++..++.+... .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.
T Consensus 157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 3333455776555443222 3689999999999999999999999999999999998887 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCC
Q 013952 212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 287 (433)
Q Consensus 212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 287 (433)
+.|++.||++++++++.+++.++++ ..+.+.+|+++++|.+++++|++||+.++ +.++.. ++|+|.||+++||+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts 303 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence 9999999999999999999763332 45677788899999999999999999853 446666 56889999999999
Q ss_pred CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC-----
Q 013952 288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----- 362 (433)
Q Consensus 288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----- 362 (433)
.|||||+|||++.+ +++..|..||++|+.|+++... .+..+..+|+.+++.++++.+ |+++
T Consensus 304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~ 369 (466)
T PRK07845 304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS 369 (466)
T ss_pred CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence 99999999999764 5678899999999999996431 234577788888776766655 6654
Q ss_pred -CcEEEEcC-----CCcc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 363 -GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 363 -~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
+..+.... .... ..+++|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++||..+.-+-++++
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 21122211 1111 23568898887 589999999999999885 999999999999998777654444443
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.4e-49 Score=381.97 Aligned_cols=393 Identities=18% Similarity=0.208 Sum_probs=280.4
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-----CCCCCCccccccCCCCCCCCCCcccccC------C
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-----PYERPALSKAYLFPEGTARLPGFHVCVG------S 71 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 71 (433)
++|||+||||||||++||.+|+++|++ |+|||+. .. ....|..++.++..... ...+..... .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence 369999999999999999999999987 9999986 21 11222223322222110 001100000 0
Q ss_pred CCCCCC-HhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc-EEecceEEEccCCCccccCCCCCCCCC-CCCEEEecCHH
Q 013952 72 GGERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID 148 (433)
Q Consensus 72 ~~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~ 148 (433)
...... ....+..+++++.+ .+..++.....|...++. ++.||+||||||++|..|+ +||.+ ..++++...+.
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~---i~G~~~~~~v~~~~~~~ 152 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP---IPGITTTPGVYDSTGLL 152 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC---CCCccCCCCEEChhHhh
Confidence 000001 11222348999887 666677655556666664 6999999999999998887 56653 24565433222
Q ss_pred HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 149 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
+ + . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||++++++++.
T Consensus 153 ~---~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~ 223 (441)
T PRK08010 153 N---L----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE 223 (441)
T ss_pred c---c----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 1 1 1 14789999999999999999999999999999999988886 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 304 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~ 304 (433)
++..+ ++ ...+.+.++ ++++|.+++|+|++||++++ ..++.. ++|+|.||+++||+.|||||+|||++.+.
T Consensus 224 ~i~~~-~~-~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-- 298 (441)
T PRK08010 224 RISHH-EN-QVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-- 298 (441)
T ss_pred EEEEc-CC-EEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 99873 23 234555555 68999999999999999754 345666 56889999999999999999999998763
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEEcC-----CCc
Q 013952 305 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLFGD-----NDL 373 (433)
Q Consensus 305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~~~-----~~~ 373 (433)
....|..+|++++.||++... .....+..+|++.+..|+++.+ |+++. ..+..+. .+.
T Consensus 299 --------~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 --------FTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLSRV--GMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred --------chhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCceee--eCCHHHHHHcCCCeEEEEEecCcChh
Confidence 455677899999999986421 1124566788877766666655 76652 2222222 111
Q ss_pred c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 374 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 374 ~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
. ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++|+....-+-++++
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 430 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMS 430 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchH
Confidence 1 23456888887 589999999999999885 999999999999998775554444443
No 21
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.1e-49 Score=388.87 Aligned_cols=390 Identities=20% Similarity=0.233 Sum_probs=287.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC----------C----CCCCCCCCccccccCCCCC----CCCCCcc
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK----------E----VAPYERPALSKAYLFPEGT----ARLPGFH 66 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~----------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~ 66 (433)
+|||+|||||++|+.||..|+++|.+ |+|+|+ . .|.+..|..+|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999998 999995 2 3555666666665533211 0001111
Q ss_pred cccCC------------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcccc
Q 013952 67 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 67 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
..... .....+...+++.+++++.+ .+..+++ ++|.+ +++++.||+||||||++|..|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 00000 00122334456689999987 5666654 45655 567899999999999999888
Q ss_pred CCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHH
Q 013952 129 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 208 (433)
Q Consensus 129 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~ 208 (433)
+ +||.+ .++ +..++..+. ..+++++|||+|++|+|+|..|...|.+|+++++.+.+++. +++++.+
T Consensus 232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~ 297 (558)
T PLN02546 232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD 297 (558)
T ss_pred C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence 7 56643 222 223322221 14789999999999999999999999999999999988875 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCC
Q 013952 209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF 284 (433)
Q Consensus 209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~ 284 (433)
.+++.+++.||++++++.+.++....++. ..+.+.+++...+|.+++++|++||++++ ..++.. ++|+|.||+++
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~-v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l 376 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIKSADGS-LSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS 376 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEEcCCCE-EEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence 99999999999999999999997633443 34566665555689999999999999853 346666 46889999999
Q ss_pred CCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc
Q 013952 285 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 364 (433)
Q Consensus 285 ~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~ 364 (433)
||++|+|||+|||+..+ .++..|..||+++|.||++.... ...|..+|+.++..|+++.+ |+++.+
T Consensus 377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e 442 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ 442 (558)
T ss_pred eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence 99999999999999764 45678999999999999875321 25677899988877777666 665421
Q ss_pred ------EEEEcCCC--cc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCC
Q 013952 365 ------TVLFGDND--LA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 427 (433)
Q Consensus 365 ------~~~~~~~~--~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 427 (433)
.+.....+ +. ...++|.|+++ ++++|||+|++|+.++|+ +.++.+|++++|++|+..+.-+-+
T Consensus 443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP 522 (558)
T PLN02546 443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP 522 (558)
T ss_pred HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 12111111 11 13467898887 689999999999999885 999999999999998776655555
Q ss_pred Ccc
Q 013952 428 SFA 430 (433)
Q Consensus 428 ~~~ 430 (433)
+++
T Consensus 523 T~~ 525 (558)
T PLN02546 523 TAA 525 (558)
T ss_pred ChH
Confidence 443
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.1e-49 Score=386.55 Aligned_cols=387 Identities=22% Similarity=0.234 Sum_probs=279.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCCC---CCccc-------ccC-
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTARL---PGFHV-------CVG- 70 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~- 70 (433)
|||+||||||||++||.+|+++|++ |+|||++ .+....|.+++.++......+. ..+.. ...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 7999999999999999999999987 9999986 2233334444443321110000 00000 000
Q ss_pred ---------CCCC-CCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCCC
Q 013952 71 ---------SGGE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAK 139 (433)
Q Consensus 71 ---------~~~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 139 (433)
.... ......+++.+++++.+. +..+ +.++|.+.++ ..+.||+||||||+.|+.|+ +||.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~ 151 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK--DPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA 151 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence 0000 113355677899999874 4333 4677877665 36899999999999998887 5666545
Q ss_pred CEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCc
Q 013952 140 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 219 (433)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV 219 (433)
++++..+.. .+ .. .+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+++.+++.||
T Consensus 152 ~~~~~~~~~---~~----~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 152 GYLTSEEAL---AL----DR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI 222 (463)
T ss_pred ceECchhhh---Cc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence 555443322 11 11 3689999999999999999999999999999999998886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChh-h-h-hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952 220 KIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY 292 (433)
Q Consensus 220 ~v~~~~~v~~i~~~~~g~~~~v~~~---~g~~i~~d~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~vf 292 (433)
+++++++|+++..++++ ..+.+. +++++++|.+++|+|++|+.+ + + ..++.. ++|+|.||++|||+.|+||
T Consensus 223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 300 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300 (463)
T ss_pred EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence 99999999999873222 334432 235799999999999999998 3 2 345555 5788999999999999999
Q ss_pred EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEE
Q 013952 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTV 366 (433)
Q Consensus 293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~ 366 (433)
|+|||+..+ ..+..|..||++||.||++.... ..++..+|.+.+..++++.+ |+++. ..+
T Consensus 301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~--~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g~~~ 366 (463)
T TIGR02053 301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANA--KLDLLVIPRVVFTDPAVASV--GLTEAEAQKAGIEC 366 (463)
T ss_pred EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCC--ccCcCCCCeEEeccCceEEE--eCCHHHHHhcCCCe
Confidence 999999864 46788999999999999875221 24556678776665655555 66642 112
Q ss_pred EEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccC
Q 013952 367 LFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG 426 (433)
Q Consensus 367 ~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 426 (433)
..+..+ .. ...++|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++|+..+.-+-
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~ 437 (463)
T TIGR02053 367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPF 437 (463)
T ss_pred EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence 222111 11 23568888887 579999999999999885 99999999999999777764433
No 23
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-49 Score=381.76 Aligned_cols=394 Identities=23% Similarity=0.279 Sum_probs=279.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC-C----CCCCCCCCccccccCCCCCCC------CCCcccccCC--
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-E----VAPYERPALSKAYLFPEGTAR------LPGFHVCVGS-- 71 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-- 71 (433)
+|||+||||||||++||.+++++|++ |+|||+ . .+....|.+++.++......+ ...+......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 59999999999999999999999988 999996 2 345555666666554332110 0111000000
Q ss_pred CCC--------------CCCHhHHHhCCcEEEeCceEEEEECCCC-EEEeCCCc--EEecceEEEccCCCccccCCCCCC
Q 013952 72 GGE--------------RLLPEWYKEKGIELILSTEIVRADIASK-TLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 134 (433)
Q Consensus 72 ~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~ 134 (433)
+.. .....+++..+++++.+.. .++.+.+ .|...+++ +++||+||||||++|.. +|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-----ip 152 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-----LP 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----CC
Confidence 000 0112234456899988753 3333332 23344553 69999999999998852 34
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 214 (433)
Q Consensus 135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l 214 (433)
|....+...+. ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+++.+
T Consensus 153 g~~~~~~~~~~-~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l 225 (466)
T PRK06115 153 GVTIDNQRIID-STGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKAL 225 (466)
T ss_pred CCCCCCCeEEC-HHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence 43322322222 2222221 1 14799999999999999999999999999999999998886 7999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEe-C--CCcEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCC
Q 013952 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKL-K--DGRTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSA 288 (433)
Q Consensus 215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~--~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~ 288 (433)
++.||++++++++.++..++++....+.. . +++++++|.|++++|++||++.+ ..++..+.+++.||+++||+.
T Consensus 226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~ 305 (466)
T PRK06115 226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSV 305 (466)
T ss_pred HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCC
Confidence 99999999999999998633332222322 1 23579999999999999999854 224555545588999999999
Q ss_pred CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------
Q 013952 289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 362 (433)
Q Consensus 289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 362 (433)
|+|||+|||++.+ .+...|.+||+++|+||++... ..++..+|.++++.|+++.+ |+++
T Consensus 306 ~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~~~ 370 (466)
T PRK06115 306 PGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLKAE 370 (466)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHHHC
Confidence 9999999999865 4678899999999999987532 25677899988887777666 6664
Q ss_pred CcEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 363 GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 363 ~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
+..+..+.. ... ....+|.|+++ ++++|+|+|++|+.++|+ +.++.+|+.++|++||..+.-+-++++
T Consensus 371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~ 449 (466)
T PRK06115 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRS 449 (466)
T ss_pred CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChH
Confidence 222222221 111 23568898887 579999999999999885 999999999999997777655555444
No 24
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.8e-49 Score=384.95 Aligned_cols=399 Identities=24% Similarity=0.279 Sum_probs=283.6
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCCC----C--CCcc-----
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTAR----L--PGFH----- 66 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~~----~--~~~~----- 66 (433)
|.+.||++||||||||++||.+|+++|++ |+|||+. .+....|..++.++....... . .+..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 55689999999999999999999999987 9999987 234444555555443211000 0 0000
Q ss_pred cccC----------CCCCCCCHhHHHhCCcEEEeCceEEEEECC-------CCEEEeCCC--cEEecceEEEccCCCccc
Q 013952 67 VCVG----------SGGERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR 127 (433)
Q Consensus 67 ~~~~----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lvlAtG~~~~~ 127 (433)
..+. ........+.+++.+++++.+ .+..+++. ...|.+.++ .+++||+||||||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 0000 000011223456679999998 66778776 445655666 579999999999999875
Q ss_pred cCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHH
Q 013952 128 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 207 (433)
Q Consensus 128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~ 207 (433)
++. ++ .+...+++. .++..+ .. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.
T Consensus 157 ~p~--~~-~~~~~~~~~---~~~~~~----~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~ 224 (472)
T PRK05976 157 LPG--LP-FDGEYVISS---DEALSL----ET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS 224 (472)
T ss_pred CCC--CC-CCCceEEcc---hHhhCc----cc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence 442 22 222223432 233222 11 3789999999999999999999999999999999988886 789999
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhh---cccccCCCcEEeCC
Q 013952 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD 282 (433)
Q Consensus 208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~ 282 (433)
+.+.+.+++.||++++++++.++....++.+..+.+.+| +++++|.+++|+|++|++..+. .++..++|++.||+
T Consensus 225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~ 304 (472)
T PRK05976 225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD 304 (472)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence 999999999999999999999997421334444445566 3699999999999999987542 23334678899999
Q ss_pred CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952 283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362 (433)
Q Consensus 283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 362 (433)
++||+.|+|||+|||+..+ +.+..|..+|+.++.||.+... ...++..+|.+.+..+++ ..+|.++
T Consensus 305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~p~~--a~vG~te 370 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP--RPFDYAAIPACCYTDPEV--ASVGLTE 370 (472)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCEEEECcCce--EEEeCCH
Confidence 9999999999999998654 4677899999999999986431 124455677766554554 4447664
Q ss_pred ------CcEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952 363 ------GDTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 425 (433)
Q Consensus 363 ------~~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 425 (433)
+..+..... ... ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++||..+.-+
T Consensus 371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 222222211 111 23567888887 579999999999999885 9999999999999988777655
Q ss_pred CCCcc
Q 013952 426 GLSFA 430 (433)
Q Consensus 426 ~~~~~ 430 (433)
-++++
T Consensus 451 hPt~~ 455 (472)
T PRK05976 451 HPTLS 455 (472)
T ss_pred CCChH
Confidence 55554
No 25
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-49 Score=382.91 Aligned_cols=394 Identities=24% Similarity=0.274 Sum_probs=275.9
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCCC-----CCC--Cccccc
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGTA-----RLP--GFHVCV 69 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 69 (433)
|| .+|||+||||||||++||.+|++.|++ |+|||++ .+....|.+++.++...... ... +.....
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~ 76 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEV 76 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCc
Confidence 56 469999999999999999999999987 9999987 23333344454443221100 000 000000
Q ss_pred CCC--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEe--CCC--cEEecceEEEccCCCccccCCC
Q 013952 70 GSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLTDF 131 (433)
Q Consensus 70 ~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lvlAtG~~~~~~~~~ 131 (433)
..+ ........++..+++.+.+.. .-+ +.+++.+ .++ ++++||+||||||++|+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~-~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p-- 151 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYG-TFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP-- 151 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC--
Confidence 000 000011122335777766532 222 3444433 344 47999999999999987543
Q ss_pred CCCCCC-CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHH
Q 013952 132 GVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210 (433)
Q Consensus 132 ~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l 210 (433)
+.+ ...+++..+ .. .....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+
T Consensus 152 ---g~~~~~~v~~~~~---~~-----~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l 219 (466)
T PRK07818 152 ---GTSLSENVVTYEE---QI-----LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEI 219 (466)
T ss_pred ---CCCCCCcEEchHH---Hh-----ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHH
Confidence 322 134554322 11 11124789999999999999999999999999999999998886 789999999
Q ss_pred HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCC
Q 013952 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 282 (433)
Q Consensus 211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 282 (433)
++.|+++||+++++++|+++.. ++....+.+. +| +++++|.+++|+|++||++.+ ..++.. ++|+|.||+
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDD--NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEE--eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC
Confidence 9999999999999999999986 3322334443 55 479999999999999999853 445665 567899999
Q ss_pred CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC
Q 013952 283 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 362 (433)
Q Consensus 283 ~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 362 (433)
++||+.|+|||+|||++.+ +++..|..||++||.||++.... ....+..+|.+.+..|+++.+ |+++
T Consensus 298 ~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~p~~a~v--Glte 364 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETL-ELGDYRMMPRATFCQPQVASF--GLTE 364 (466)
T ss_pred CcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCC-ccCccCCCCeEEECCCCeEEE--eCCH
Confidence 9999999999999998754 56788999999999999864311 112677889888776766655 6654
Q ss_pred C------cEEEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhccc
Q 013952 363 G------DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 425 (433)
Q Consensus 363 ~------~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 425 (433)
. ..+..+..+ .. ....+|.|+++ ++++|||+|++|+.++|+ +.++.||++++|++||....-+
T Consensus 365 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 444 (466)
T PRK07818 365 EQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHT 444 (466)
T ss_pred HHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccC
Confidence 2 222222211 11 23467888887 579999999999999885 9999999999999977765544
Q ss_pred CCCcc
Q 013952 426 GLSFA 430 (433)
Q Consensus 426 ~~~~~ 430 (433)
-++|+
T Consensus 445 hPt~~ 449 (466)
T PRK07818 445 HPTLS 449 (466)
T ss_pred CCchH
Confidence 44444
No 26
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=7.4e-47 Score=387.40 Aligned_cols=381 Identities=24% Similarity=0.365 Sum_probs=308.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 86 (433)
Q Consensus 8 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (433)
|||||||+||+++|.+|++.+....+|+||+++ ..+|.++.++.-+........ ......+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~-----------l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDD-----------ITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHH-----------ccCCCHHHHHHCCC
Confidence 689999999999999999876445679999999 778888777652211111111 12345778889999
Q ss_pred EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952 87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 166 (433)
Q Consensus 87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (433)
+++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+ +||.+.++++.++++.++..+.+.+. .+++++
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv 144 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA 144 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence 9999999999999999999999989999999999999998887 68877788999999999988887765 478999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013952 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 246 (433)
Q Consensus 167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g 246 (433)
|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++...+.+.+.+++.||++++++.+.++.. ++....+.+.+|
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG 222 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG 222 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence 999999999999999999999999999999887778999999999999999999999999999976 556678889999
Q ss_pred cEEECCEEEEcccCccChhhhh-cccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHH
Q 013952 247 RTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV 325 (433)
Q Consensus 247 ~~i~~d~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 325 (433)
+++++|.||+++|.+|++.++. .++..+ ++|.||++|||+.|+|||+|||+..+...+ ..+..|..||+++|
T Consensus 223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA 295 (785)
T TIGR02374 223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA 295 (785)
T ss_pred CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence 9999999999999999999875 355555 789999999999999999999998765433 46788999999999
Q ss_pred HHHhccCCCCCccCCCCCC-eEEEeecccceEEecCCCCc----EEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952 326 KTIMATEGGKTVTGYDYLP-YFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 400 (433)
Q Consensus 326 ~~i~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~ 400 (433)
.||.+... .+|...+ ......+++.+...|..... .+.+.+.. ...|.++++++++|+|++++|+ .
T Consensus 296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~ 366 (785)
T TIGR02374 296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T 366 (785)
T ss_pred HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence 99987531 2344333 33455677777777754311 22222222 4568899999999999999984 4
Q ss_pred HHHHHHHHHHHcCCCCCChhhh
Q 013952 401 EENKAIAKVARVQPSVESLDVL 422 (433)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (433)
.+...+..++.++.++.+...|
T Consensus 367 ~~~~~L~~li~~~~~l~~~~~l 388 (785)
T TIGR02374 367 SDYGRLLDMVLKQADISEDPAI 388 (785)
T ss_pred HHHHHHHHHHHcCCCCCcChhh
Confidence 5778889999999877653333
No 27
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-47 Score=360.12 Aligned_cols=360 Identities=21% Similarity=0.323 Sum_probs=283.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
++|||||||+||+++|..|++.+. ..+|+||+++ ..+|.++.++..+........+ ......+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFSQGQRADDL----------TRQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh----------hcCCHHHHHHhC
Confidence 589999999999999999998763 5779999999 7788888765543321111111 011245667788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 164 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
+++++.++.|..++++.+.+.+ ++.++.||+||||||+.|..|+ ++|.+. +++++++.++..+...+. .+++
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~ 143 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR 143 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence 9999998899999998888876 5668999999999999998777 576543 888888888877776664 4789
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013952 165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 244 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~ 244 (433)
++|||+|++|+|+|..|.+.|.+|+++++.+.+++..+++++.+.+.+.+++.||++++++++.++.. ++....+.+.
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~ 221 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEK--TDSGIRATLD 221 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEc--cCCEEEEEEc
Confidence 99999999999999999999999999999998887767899999999999999999999999999986 3333567888
Q ss_pred CCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952 245 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 323 (433)
Q Consensus 245 ~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~ 323 (433)
+|+++++|.+|+|+|.+|+..+++. ++..++ ++.||++|||+.|||||+|||+..+.. ..+.+..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence 9999999999999999999988743 565555 499999999999999999999986532 12457778999999
Q ss_pred HHHHHhccCCCCCccCCCCCCe-EEEeecccceEEecCCCCcE--EEEcCCCccccCCcEEEEEEeCCEEEEEEEecCCh
Q 013952 324 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 400 (433)
Q Consensus 324 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~ 400 (433)
+|+||.+.. ..|...+. .....+++.+..+|...++. ....+. ....|.++++++|+|+|+.++|+..
T Consensus 295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence 999999864 34444333 33456777777778764322 211111 1456788888999999999999765
Q ss_pred HH
Q 013952 401 EE 402 (433)
Q Consensus 401 ~~ 402 (433)
..
T Consensus 366 ~~ 367 (377)
T PRK04965 366 KE 367 (377)
T ss_pred HH
Confidence 43
No 28
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.5e-48 Score=376.96 Aligned_cols=392 Identities=19% Similarity=0.225 Sum_probs=281.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----C--CCCCcccccCC---C-
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----A--RLPGFHVCVGS---G- 72 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~---~- 72 (433)
+|+||||||||++||.+|++.|.+ |+|||++ .+.+..|..+|.++..... . ...+....... +
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 799999999999999999999987 9999997 2455556666665432110 0 00011000000 0
Q ss_pred -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCCCCCC
Q 013952 73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 138 (433)
Q Consensus 73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~ 138 (433)
........++..+++++.+ ++..++.....|...++ ++++||+||||||++|+.|+ +++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p---~~~~~~ 154 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP---FAPFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC---CCCCCC
Confidence 0011223345578999887 55545543334444444 47999999999999998776 345444
Q ss_pred CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952 139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 218 (433)
Q Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G 218 (433)
..+++.. ++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 155 ~~v~~~~---~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G 225 (458)
T PRK06912 155 KWIINSK---HAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG 225 (458)
T ss_pred CeEEcch---HHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence 4455433 222221 1 3789999999999999999999999999999999998886 68999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hcccccCCCcEEeCCCCCCCCCCeEEc
Q 013952 219 IKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYAV 294 (433)
Q Consensus 219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~vfa~ 294 (433)
|++++++++.+++. ++....+...++ .++++|.+++|+|++|+.+.+ ..++..+++++.||+++||+.|||||+
T Consensus 226 I~i~~~~~V~~i~~--~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~ 303 (458)
T PRK06912 226 VKIFTGAALKGLNS--YKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYAC 303 (458)
T ss_pred CEEEECCEEEEEEE--cCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEE
Confidence 99999999999976 332233333222 369999999999999998754 335555555699999999999999999
Q ss_pred CccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEE
Q 013952 295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF 368 (433)
Q Consensus 295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~ 368 (433)
|||+..+ +.+..|..+|++||.++.+... ..++..+|.+++..++++.+ |+++. ..+..
T Consensus 304 GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~~ 368 (458)
T PRK06912 304 GDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIRI 368 (458)
T ss_pred eecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeEE
Confidence 9999754 5677899999999999986432 24567788887666666555 66542 11222
Q ss_pred cCCC--c------cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 369 GDND--L------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 369 ~~~~--~------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
+..+ . ...+.+|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++|+..+..+-++|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 442 (458)
T PRK06912 369 GEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442 (458)
T ss_pred EEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHH
Confidence 2111 1 123567888887 579999999999999885 9999999999999988877666666554
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.7e-48 Score=385.51 Aligned_cols=392 Identities=19% Similarity=0.205 Sum_probs=278.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC------CCC-CCcccccCCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT------ARL-PGFHVCVGSG 72 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 72 (433)
.+|||+||||||+|++||..|++.|++ |+|||++ .+.+..|..++.++..... ..+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999987 2334445555544322110 000 1111000000
Q ss_pred CCC----------------CCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCC
Q 013952 73 GER----------------LLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV 133 (433)
Q Consensus 73 ~~~----------------~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~ 133 (433)
... .....+... +++++.+ .+..++.....|...++. +++||+||||||++|..|+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i 249 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I 249 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence 000 112223444 7899987 566666554455555553 6999999999999998887 5
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHH
Q 013952 134 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 213 (433)
Q Consensus 134 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~ 213 (433)
||.+...+++ +.. . +. ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 250 ~g~~~~~~~~--~~~-~--~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~ 319 (561)
T PRK13748 250 PGLKETPYWT--STE-A--LV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA 319 (561)
T ss_pred CCCCccceEc--cHH-H--hh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence 6654333332 211 1 11 1124789999999999999999999999999999885 45554 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCC
Q 013952 214 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 289 (433)
Q Consensus 214 l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 289 (433)
+++.||++++++.+.+++.+ ++ ...+.+.++ ++++|.+++|+|++||+.++ ..++.. ++|+|.||+++||+.|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~-~~-~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~ 396 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV-DG-EFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP 396 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec-CC-EEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence 99999999999999999862 33 234555555 69999999999999999854 345666 5688999999999999
Q ss_pred CeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC------C
Q 013952 290 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 363 (433)
Q Consensus 290 ~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 363 (433)
||||+|||++.+ .....|..+|++||.||++... ..++..+|.+.+..++++.+ |+++ +
T Consensus 397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~p~~a~v--Glte~~a~~~g 461 (561)
T PRK13748 397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA---ALDLTAMPAVVFTDPQVATV--GYSEAEAHHDG 461 (561)
T ss_pred CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCeEEEccCCceee--eCCHHHHHHcC
Confidence 999999999865 3456688899999999986432 25566678766555555544 7665 2
Q ss_pred cEEEEcCC-----Ccc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 364 DTVLFGDN-----DLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 364 ~~~~~~~~-----~~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
..+..... ... ....+|.|+++ ++++|||+|++|+.++++ +.++.+|++++|++||..+.-+-++++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 539 (561)
T PRK13748 462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV 539 (561)
T ss_pred CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence 11211111 111 23578999888 489999999999999885 999999999999996665554444443
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=9.5e-48 Score=373.45 Aligned_cols=390 Identities=17% Similarity=0.190 Sum_probs=275.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-----CCCCCCccccccCCCCCCCCCCcccccC------CC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-----PYERPALSKAYLFPEGTARLPGFHVCVG------SG 72 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 72 (433)
+|||+||||||||++||..|++.|++ |+|||++ .. ....|..++.++..... ...+..... ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTSR 77 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999987 9999997 21 11122233333322110 001100000 00
Q ss_pred CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC---CcEEecceEEEccCCCccccCCCCCCCCC-CCCEEEecCHH
Q 013952 73 GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID 148 (433)
Q Consensus 73 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~ 148 (433)
......+.+.+.+++++.+.. ..+ ++++|.+.+ ..++.||+||||||++|+.|+ +||.. ..++++..++.
T Consensus 78 ~~~~~~~~~~~~gV~~~~g~~-~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~---i~G~~~~~~v~~~~~~~ 151 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDAEA-HFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNVLP---IPGLADSKHVYDSTGIQ 151 (438)
T ss_pred HHHHHHHHHHhCCCEEEEEEE-EEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC---CCCcCCCCcEEchHHHh
Confidence 011123456678999998743 322 456665543 247999999999999998887 56643 34566543322
Q ss_pred HHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 149 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
.+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. .++++.+.+.+.+++.||++++++++.
T Consensus 152 ---~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~ 222 (438)
T PRK07251 152 ---SLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT 222 (438)
T ss_pred ---cch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 221 1 4789999999999999999999999999999999998886 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 304 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~ 304 (433)
+++. +++. ..+. .+++++++|.+++|+|++|+.+.+. .++.. ++|++.||+++||+.|||||+|||++.+.
T Consensus 223 ~i~~-~~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~-- 297 (438)
T PRK07251 223 EVKN-DGDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ-- 297 (438)
T ss_pred EEEe-cCCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 9986 2222 2333 3566899999999999999987642 34444 56889999999999999999999997653
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEEEE-----cCCCc
Q 013952 305 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTVLF-----GDNDL 373 (433)
Q Consensus 305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~~~-----~~~~~ 373 (433)
....|..+|+.++.++.+... .....+..+|+..+..++++ .+|+++. ..+.. ...+.
T Consensus 298 --------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~p~ia--~vGlte~~a~~~g~~~~~~~~~~~~~~~ 366 (438)
T PRK07251 298 --------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFITPPLS--QVGLTEKEAKEAGLPYAVKELLVAAMPR 366 (438)
T ss_pred --------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEECCCceE--eeeCCHHHHHhcCCCeEEEEEECCcchh
Confidence 455677899999999886532 12245567887766545544 4476642 11222 11111
Q ss_pred c---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 374 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 374 ~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
. ....+|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++|+....-+-++++
T Consensus 367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 429 (438)
T PRK07251 367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMA 429 (438)
T ss_pred hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChH
Confidence 1 23456888887 579999999999999885 999999999999987765444444433
No 31
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-47 Score=375.49 Aligned_cols=395 Identities=22% Similarity=0.277 Sum_probs=278.4
Q ss_pred CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcC-------C----CCCCCCCCccccccCCCCC----C---CCCC
Q 013952 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------E----VAPYERPALSKAYLFPEGT----A---RLPG 64 (433)
Q Consensus 3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-------~----~~~~~~~~~~~~~~~~~~~----~---~~~~ 64 (433)
...||++||||||||++||.++++.|.+ |+|||+ . .+....|..++.++..... . ...+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G 78 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHG 78 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 4579999999999999999999999987 999998 2 1222222233332211100 0 0000
Q ss_pred cccc-cCCC--------------CCCCCHhHHHhCCcEEEeCceEEEEEC--CCCEEEeC--CCcEEecceEEEccCCCc
Q 013952 65 FHVC-VGSG--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGSTV 125 (433)
Q Consensus 65 ~~~~-~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lvlAtG~~~ 125 (433)
.... ...+ ........++..+++++.+ .+..++. +.++|.+. ++++++||+||||||+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 0000 0000 0011223445578999987 4555553 24566654 345799999999999999
Q ss_pred cccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHH
Q 013952 126 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 205 (433)
Q Consensus 126 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~ 205 (433)
+.++. ++ .+...+++.. +...+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. ++++
T Consensus 158 ~~~p~--~~-~~~~~~~~~~---~~~~~----~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~ 225 (475)
T PRK06327 158 RHLPG--VP-FDNKIILDNT---GALNF----T-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQ 225 (475)
T ss_pred CCCCC--CC-CCCceEECcH---HHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHH
Confidence 75543 22 2223344322 22221 1 14789999999999999999999999999999999988876 7899
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-CCCc
Q 013952 206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGG 277 (433)
Q Consensus 206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~ 277 (433)
+.+.+.+.+++.||+++++++|.+++.++++ ..+.+.+ | +++++|.+++++|++|++..+ ..++.. ++|+
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~ 303 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGF 303 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCe
Confidence 9999999999999999999999999873222 3455443 3 469999999999999999843 234555 5688
Q ss_pred EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEE
Q 013952 278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 357 (433)
Q Consensus 278 i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (433)
|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||.+... ...|..+|+.++..|+++.+
T Consensus 304 i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a~v- 369 (475)
T PRK06327 304 IPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIAWV- 369 (475)
T ss_pred EeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceEEE-
Confidence 999999999999999999999754 4577899999999999986532 14677889888665665554
Q ss_pred ecCCCC------cEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChh
Q 013952 358 YGDNVG------DTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLD 420 (433)
Q Consensus 358 ~g~~~~------~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 420 (433)
|+++. ..+..+..+.. ....+|.|+++ ++++|||+|++|++++|+ +.++.+|++++|++||.
T Consensus 370 -Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 370 -GKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred -eCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 76652 22222222111 24568898888 589999999999999885 99999999999999888
Q ss_pred hhcccCCCcc
Q 013952 421 VLKNEGLSFA 430 (433)
Q Consensus 421 ~~~~~~~~~~ 430 (433)
.+.-+-++++
T Consensus 449 ~~~~~hPt~~ 458 (475)
T PRK06327 449 RICHAHPTLS 458 (475)
T ss_pred cCCcCCCChH
Confidence 7755555544
No 32
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.2e-47 Score=372.47 Aligned_cols=382 Identities=18% Similarity=0.226 Sum_probs=279.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC----CCCCCCCCccccccCCCCC----CCCCCcccccC------
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----VAPYERPALSKAYLFPEGT----ARLPGFHVCVG------ 70 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------ 70 (433)
+||++|||+||+|..||. +..|.+ |+|||++ .+.+..|.++|.++..... .+...+.....
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence 599999999999988864 446887 9999986 3667777787776533211 00000000000
Q ss_pred --------C----CCCCCCHhHH---HhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCC
Q 013952 71 --------S----GGERLLPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 135 (433)
Q Consensus 71 --------~----~~~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g 135 (433)
. .......... ++.+++++.+..++. +.++|.+.++++++||+||||||++|..|+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~~ 150 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---IA 150 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---CC
Confidence 0 0000011121 237999999866554 5778888788889999999999999987763 22
Q ss_pred CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952 136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 215 (433)
Q Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~ 215 (433)
.. ++ .+.+..++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.++
T Consensus 151 ~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~~ 221 (452)
T TIGR03452 151 DS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIAK 221 (452)
T ss_pred CC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHHh
Confidence 22 22 2234455544432 3789999999999999999999999999999999888775 78999888877554
Q ss_pred hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-CCCcEEeCCCCCCCCCCe
Q 013952 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDV 291 (433)
Q Consensus 216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~v 291 (433)
.||+++++++|.+++.++++ ..+.+.+|+++++|.+++++|++|+++++. .++.. ++|+|.||+++||+.|+|
T Consensus 222 -~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~I 298 (452)
T TIGR03452 222 -KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGV 298 (452)
T ss_pred -cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCE
Confidence 68999999999999863222 456777788899999999999999998753 35666 568899999999999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 365 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 365 (433)
||+|||+..+ +....|.+||+++|+||.+.... ....+..+|++++..|+++.+ |+++. ..
T Consensus 299 yA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~~ 365 (452)
T TIGR03452 299 WALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGHD 365 (452)
T ss_pred EEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCCC
Confidence 9999999865 34567889999999999865311 125667889888766666555 66652 22
Q ss_pred EEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhh
Q 013952 366 VLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL 422 (433)
Q Consensus 366 ~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 422 (433)
+..+..+.. ..+.+|.|+++ ++++|||+|++|++++|+ +.++.+|+.++|++||..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~ 433 (452)
T TIGR03452 366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARK 433 (452)
T ss_pred eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 222211111 24568899888 589999999999999885 9999999999999977654
No 33
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-48 Score=382.63 Aligned_cols=396 Identities=20% Similarity=0.253 Sum_probs=283.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCCCCCccccccCCCCCCC----C---CCcccc---
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE------VAPYERPALSKAYLFPEGTAR----L---PGFHVC--- 68 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~------~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~--- 68 (433)
+|||+|||+|++|..||..+++.|++ |+|||+. .+....|.++|.++......+ . ..+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999998 9999952 356666777776554432100 0 011000
Q ss_pred --------------c-CC-C----------------CCCCCHhHHHhC-------CcEEEeCceEEEEECCCCEEEe-CC
Q 013952 69 --------------V-GS-G----------------GERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT 108 (433)
Q Consensus 69 --------------~-~~-~----------------~~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~ 108 (433)
. .. . ........++.. +++++.+...+. +.++|.. .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~---~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIV---DKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEe---cCCeEEEccC
Confidence 0 00 0 001111223333 367777643322 3455544 35
Q ss_pred CcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeE
Q 013952 109 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 188 (433)
Q Consensus 109 ~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V 188 (433)
++++.||+||||||++|..|+. ++.+...++++. ++..+.. .+++++|||+|++|+|+|..|.+.|.+|
T Consensus 270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~---d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSD---TAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehH---Hhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 6789999999999999987763 444445677553 3333321 3789999999999999999999999999
Q ss_pred EEEccCCccCCCCCCHHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEECC
Q 013952 189 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------G--------RTLEAD 252 (433)
Q Consensus 189 ~li~~~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-------g--------~~i~~d 252 (433)
+++++.+++++. +++++.+.+.+.+ ++.||++++++.|.++...+++....+.+.+ + +++++|
T Consensus 339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 999999999886 8999999998875 6799999999999999863333323443321 1 379999
Q ss_pred EEEEcccCccChhhh---hcccccCCCcEEeCCCCCCC------CCCeEEcCccccccccccCcccccccHHHHHHHHHH
Q 013952 253 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 323 (433)
Q Consensus 253 ~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~ 323 (433)
.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+|||++.+ .+...|.+||++
T Consensus 418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~ 487 (659)
T PTZ00153 418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK 487 (659)
T ss_pred EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence 999999999999865 33455566889999999997 69999999998754 467788999999
Q ss_pred HHHHHhccCCC----------CCccCCCCCCeEEEeecccceEEecCCCCcE-------------EEEcCCCcc------
Q 013952 324 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------ 374 (433)
Q Consensus 324 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~~~------ 374 (433)
+++||.+.... .....|..+|...+..|+++.+ |+++.+. ..+......
T Consensus 488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~ 565 (659)
T PTZ00153 488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI 565 (659)
T ss_pred HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence 99999875210 2235677889888877777666 6654211 111111100
Q ss_pred -------------------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 375 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 375 -------------------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
...++|.|+++ ++++|||+|++|++++++ +.++.+|++++|++||..+.-+-++++
T Consensus 566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~s 643 (659)
T PTZ00153 566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTIS 643 (659)
T ss_pred ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChH
Confidence 01567898888 589999999999999885 999999999999998887765555544
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.3e-47 Score=373.35 Aligned_cols=391 Identities=17% Similarity=0.154 Sum_probs=274.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-----CCCCCCCCccccccCCCCC------CCCCCcccccCC-C
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-----VAPYERPALSKAYLFPEGT------ARLPGFHVCVGS-G 72 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~ 72 (433)
+||++|||+|++|+++|..|++.|.+ |+++|+. .+....|..++.++..... ....++...... +
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 58999999999999999999999987 9999975 2334445555544322100 000111100000 0
Q ss_pred --------------CCC-CCHhHHHhC-CcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCCC
Q 013952 73 --------------GER-LLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 134 (433)
Q Consensus 73 --------------~~~-~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~ 134 (433)
... .....++.. +++++.+. ..-++...-.|...++. +++||+||||||++|+.|+ +|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i~ 168 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---IP 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---CC
Confidence 000 112233333 78888874 33333322334445553 6999999999999998887 56
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 214 (433)
Q Consensus 135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l 214 (433)
|.+....++. .+. +. ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+++.+
T Consensus 169 G~~~~~~~~~---~~~--l~---~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L 238 (479)
T PRK14727 169 GLMDTPYWTS---TEA--LF---SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACF 238 (479)
T ss_pred CcCccceecc---hHH--hc---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHH
Confidence 6543333321 111 11 1114789999999999999999999999999999875 56665 7999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCC
Q 013952 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD 290 (433)
Q Consensus 215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~ 290 (433)
++.||+++++++++++..+++ ...+.+.++ ++++|.+++|+|++||+.++ ..++.. .+|+|.||+++||+.|+
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~ 315 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDN--GFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPD 315 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCC--EEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCC
Confidence 999999999999999986322 244555555 69999999999999999854 335665 56889999999999999
Q ss_pred eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------c
Q 013952 291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------D 364 (433)
Q Consensus 291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~ 364 (433)
|||+|||++.+. ....|..+|+.||.||++... ..++...|++.+..++++.+ |+++. .
T Consensus 316 IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~ia~v--Glte~~a~~~g~ 380 (479)
T PRK14727 316 IYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQVATV--GLSEAKAHLSGI 380 (479)
T ss_pred EEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCceeee--eCCHHHHHHcCC
Confidence 999999998763 456788999999999987532 25566778776655655554 76652 1
Q ss_pred EEE-----EcCCCc---cccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 365 TVL-----FGDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 365 ~~~-----~~~~~~---~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
.+. +.+... ....++|.|+++ ++++|||+|++|+.++|+ +.++.+|++++|++||..+.-+-++++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 457 (479)
T PRK14727 381 ETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMV 457 (479)
T ss_pred ceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChH
Confidence 121 111111 123568899887 589999999999998885 999999999999997666555444443
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.1e-47 Score=374.36 Aligned_cols=391 Identities=19% Similarity=0.175 Sum_probs=277.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-------------CCCCCCCCccccccCCCCCC----CCCCccc
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-------------VAPYERPALSKAYLFPEGTA----RLPGFHV 67 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (433)
+||+||||||++|+.||..+++.|.+ |++||+. .+.+..|.++|.++...... ....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 9999962 24444555666544322110 0001100
Q ss_pred ccCC----C--------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeC--CC--cEEecceEEEccCCCc
Q 013952 68 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 125 (433)
Q Consensus 68 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~ 125 (433)
.... + ........++..+++++.+... -++ .++|.+. ++ ++++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~-f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAE-FVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEE-EcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 0112233456789999998543 343 3455442 33 3699999999999999
Q ss_pred cccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHH
Q 013952 126 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 205 (433)
Q Consensus 126 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~ 205 (433)
+.|+ +||... ..++ ..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +.+++. ++++
T Consensus 156 ~~p~---ipG~~~-~~~~---~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 221 (484)
T TIGR01438 156 RYPG---IPGAKE-LCIT---SDDLFSLP----Y-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD 221 (484)
T ss_pred CCCC---CCCccc-eeec---HHHhhccc----c-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence 8877 566432 2222 22222221 1 468999999999999999999999999999987 466664 7999
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccC--CCc
Q 013952 206 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG 277 (433)
Q Consensus 206 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~a~G~~p~~~~~---~~~~~~~--~g~ 277 (433)
+.+.+++.|++.||++++++.+.++... ++ ...+.+.++ +++++|.|++|+|++||++++ ..++..+ +|+
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~-~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~ 299 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EA-KVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEc-CC-eEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence 9999999999999999999999998763 22 234655554 379999999999999999864 3355553 478
Q ss_pred EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEE
Q 013952 278 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 357 (433)
Q Consensus 278 i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (433)
|.||+++||+.|+|||+|||+.... ..+..|.+||+.+|+||++... ....|..+|+..+..|+++.+
T Consensus 300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~--~~~~~~~~p~~i~~~p~ia~v- 367 (484)
T TIGR01438 300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGST--VICDYENVPTTVFTPLEYGAC- 367 (484)
T ss_pred EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCC--cccccccCCeEEeCCCceeee-
Confidence 9999999999999999999996322 3567789999999999986432 125677789888777766555
Q ss_pred ecCCCCc--------EEEEc--CCCcc--------ccCCcEEEEEE---eCCEEEEEEEecCChHHH-HHHHHHHHcCCC
Q 013952 358 YGDNVGD--------TVLFG--DNDLA--------SATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS 415 (433)
Q Consensus 358 ~g~~~~~--------~~~~~--~~~~~--------~~~~~~~~~~~---~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~ 415 (433)
|+++.+ .+... ...+. ....+|.|+++ ++++|||+|++|++++|+ +.++.+|++++|
T Consensus 368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t 446 (484)
T TIGR01438 368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT 446 (484)
T ss_pred -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 665421 11111 11111 11457888775 379999999999999885 999999999999
Q ss_pred CCChhhhcccCCCcc
Q 013952 416 VESLDVLKNEGLSFA 430 (433)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (433)
++||..+.-+-++++
T Consensus 447 ~~dl~~~~~~hPt~s 461 (484)
T TIGR01438 447 KKDLDNTIGIHPVCA 461 (484)
T ss_pred HHHHhhhhcCCCChH
Confidence 997776544444443
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.6e-47 Score=371.48 Aligned_cols=392 Identities=23% Similarity=0.231 Sum_probs=274.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCC----CCCCCcccccC-CC---
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGT----ARLPGFHVCVG-SG--- 72 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~--- 72 (433)
+||||||||||+|++||.+|++.|++ |+|||++ . +.+..|.+++.++..... .+.+.+..... ..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF 79 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 69999999999999999999999987 9999986 2 333445455443321100 00111100000 00
Q ss_pred -------------CCCCC-HhHHHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCC
Q 013952 73 -------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 138 (433)
Q Consensus 73 -------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~ 138 (433)
..... ...++..+++++.+ ....++ .+.+.+ ++++++||+||||||+. .|+.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~~ 153 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLILG 153 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccCC
Confidence 00111 22344567888776 343333 345555 66789999999999998 334222221123
Q ss_pred CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952 139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 218 (433)
Q Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G 218 (433)
..++++. +...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+++.+++.
T Consensus 154 ~~~~~~~---~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~- 223 (460)
T PRK06292 154 DRLLTSD---DAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE- 223 (460)
T ss_pred CcEECch---HHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-
Confidence 3454432 222221 14789999999999999999999999999999999988875 7999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCeE
Q 013952 219 IKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 292 (433)
Q Consensus 219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~vf 292 (433)
|++++++++.+++..++ ....+++.++ +++++|.+++++|++|+++.+ ..++.. ++|+|.||+++||+.|+||
T Consensus 224 I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy 302 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY 302 (460)
T ss_pred cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence 99999999999986322 1223333333 579999999999999999853 345655 5688999999999999999
Q ss_pred EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cEE
Q 013952 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DTV 366 (433)
Q Consensus 293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~~ 366 (433)
|+|||++.+ ..+..|..||++||.||.+.. .....+..+|+.++..++++.+ |.++. ..+
T Consensus 303 A~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~--~~~~~~~~~p~~~~~~~~~a~v--G~te~~a~~~g~~~ 368 (460)
T PRK06292 303 AAGDVNGKP----------PLLHEAADEGRIAAENAAGDV--AGGVRYHPIPSVVFTDPQIASV--GLTEEELKAAGIDY 368 (460)
T ss_pred EEEecCCCc----------cchhHHHHHHHHHHHHhcCCC--CCCcCCCCCCeEEECCCccEEe--ECCHHHHHhcCCCe
Confidence 999999764 456779999999999998742 1125667788877766666555 76652 222
Q ss_pred EEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 367 LFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 367 ~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
.....+ .. ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++||..+.-+-++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 443 (460)
T PRK06292 369 VVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS 443 (460)
T ss_pred EEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 221111 11 23578898888 579999999999999885 999999999999997776654444443
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.2e-47 Score=370.29 Aligned_cols=395 Identities=19% Similarity=0.211 Sum_probs=275.3
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-------------CCCCCCCCccccccCCCCCC-------C
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-------------VAPYERPALSKAYLFPEGTA-------R 61 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-------------~~~~~~~~~~~~~~~~~~~~-------~ 61 (433)
|...|||+||||||||++||.+|+++|++ |+|||+. .+....|.+++.++...... .
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 33469999999999999999999999988 9999952 12223333443322110000 0
Q ss_pred CCCcccccCC--------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCC---CcEEecceEEEccCCC
Q 013952 62 LPGFHVCVGS--------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGST 124 (433)
Q Consensus 62 ~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~ 124 (433)
..++...... .........++..+++++.+. .... +.++|.+.+ +.+++||+||||||+.
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKLK--DEHTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEEc--cCCEEEEeeCCCceEEECCEEEEecCCC
Confidence 0000000000 000011122233678888763 3322 345665532 3579999999999999
Q ss_pred ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCH
Q 013952 125 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA 204 (433)
Q Consensus 125 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~ 204 (433)
|+.|+. +||.+. ..+ +..+...+. . .+++++|||+|++|+|+|..|++.|.+|+++.+. .+++. +++
T Consensus 156 p~~p~~--i~G~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~ 222 (499)
T PTZ00052 156 PSIPED--VPGAKE-YSI---TSDDIFSLS----K-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDR 222 (499)
T ss_pred CCCCCC--CCCccc-eee---cHHHHhhhh----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCH
Confidence 987642 566432 122 223332221 1 4689999999999999999999999999999874 55554 899
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEe
Q 013952 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET 280 (433)
Q Consensus 205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~v 280 (433)
++.+.+++.|++.||++++++.+.++...+ +. ..+.+.+|+++++|.|++++|++||++++ ..++.. ++|++.+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~ 300 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIA 300 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEee
Confidence 999999999999999999999999997632 22 45777788889999999999999999876 334555 4677777
Q ss_pred CCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecC
Q 013952 281 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 360 (433)
Q Consensus 281 d~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~ 360 (433)
+++ +|+.|+|||+|||+.... .++..|.+||+.+|+||++... ....+..+|+.+++.|+++.+ |+
T Consensus 301 ~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Gl 366 (499)
T PTZ00052 301 PND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GY 366 (499)
T ss_pred CCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cC
Confidence 777 999999999999986321 4678899999999999986432 235677889988877777666 66
Q ss_pred CCCc--------EEEEcCCCc-----c------------------ccCCcEEEEEE-e--CCEEEEEEEecCChHHH-HH
Q 013952 361 NVGD--------TVLFGDNDL-----A------------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KA 405 (433)
Q Consensus 361 ~~~~--------~~~~~~~~~-----~------------------~~~~~~~~~~~-~--~~~l~G~~~~g~~~~~~-~~ 405 (433)
++.+ .+.....+. . ..+.+|.|+++ + +++|||+|++|++++|+ +.
T Consensus 367 te~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~ 446 (499)
T PTZ00052 367 SSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG 446 (499)
T ss_pred CHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHH
Confidence 5421 111111110 0 01468999876 2 69999999999999996 99
Q ss_pred HHHHHHcCCCCCChhhhcccCCCccc
Q 013952 406 IAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
++.+|++++|++||..+.-+-+++++
T Consensus 447 ~~~ai~~~~t~~~l~~~~~~hPt~sE 472 (499)
T PTZ00052 447 FSLALKLGAKKSDFDSMIGIHPTDAE 472 (499)
T ss_pred HHHHHHCCCCHHHHhcccccCCCCch
Confidence 99999999999988877666666654
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2.3e-46 Score=366.83 Aligned_cols=394 Identities=22% Similarity=0.266 Sum_probs=277.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C---CCCCCCCccccccCCCCCCC----CCCcccccCCC----
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V---APYERPALSKAYLFPEGTAR----LPGFHVCVGSG---- 72 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---- 72 (433)
.|||+|||||+||++||.+|++.|++ |+|||+. . +....|..++.++....... ...+.......
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 9999986 1 22222333443332211100 00000000000
Q ss_pred -------------CCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCCCccccCCCCCC-CCC
Q 013952 73 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVE-GAD 137 (433)
Q Consensus 73 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~-g~~ 137 (433)
........+++.+++++.+ .+..+++....+...++ .+++||+||+|||++|+.|+. + +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~---~~~~~ 153 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPG---PFDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCC---CCCCC
Confidence 0001123445678999987 44445543333444443 479999999999999987763 3 222
Q ss_pred CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc
Q 013952 138 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 217 (433)
Q Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~ 217 (433)
...+++. .+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus 154 ~~~~~~~---~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~ 224 (461)
T TIGR01350 154 GEVVITS---TGALNLK----E-VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKK 224 (461)
T ss_pred CceEEcc---hHHhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHc
Confidence 2234432 3332221 1 4789999999999999999999999999999999988875 7899999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hh-hccccc-CCCcEEeCCCCCCCCCCe
Q 013952 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDV 291 (433)
Q Consensus 218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~v 291 (433)
||++++++++.+++.+ ++. ..+.+.+| +++++|.+++|+|++|++. ++ ..++.. .+|++.||+++||+.|+|
T Consensus 225 gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~I 302 (461)
T TIGR01350 225 GVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGI 302 (461)
T ss_pred CCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCE
Confidence 9999999999999863 333 34666666 5799999999999999998 33 345555 568899999999999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC------cE
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 365 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 365 (433)
||+|||+..+ ..+..|..+|+.+|.||.+.... ..++...|...+..++++.. |.++. ..
T Consensus 303 yaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~~a~v--G~~~~~a~~~g~~ 368 (461)
T TIGR01350 303 YAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPEVASV--GLTEEQAKEAGYD 368 (461)
T ss_pred EEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCceEEE--eCCHHHHHhCCCC
Confidence 9999999754 46788999999999999875321 24566677766655555444 65542 11
Q ss_pred EEEcCCC-----cc---ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCcc
Q 013952 366 VLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 430 (433)
Q Consensus 366 ~~~~~~~-----~~---~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
+.....+ .. ....+|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++||..+..+-++|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~ 444 (461)
T TIGR01350 369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLS 444 (461)
T ss_pred eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHH
Confidence 2222111 11 23567888877 579999999999998885 999999999999998888755555554
No 39
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=8.9e-44 Score=344.99 Aligned_cols=382 Identities=19% Similarity=0.257 Sum_probs=287.5
Q ss_pred HHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCC-HhHHHhCCcEEEeCceEEE
Q 013952 19 YAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 96 (433)
Q Consensus 19 ~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 96 (433)
+||.+|++.+ +..+|+|||++ ...|..+.+..-. .... . .+ ....... ..++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~~~-~g~~-~-~~-------~~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPYVI-GGVI-D-DR-------NKLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCeEe-cccc-C-CH-------HHcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788998874 35679999999 4434322221100 0000 0 00 0001222 3455888999988889999
Q ss_pred EECCCCEEEeCC---CcEEe--cceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCC
Q 013952 97 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 171 (433)
Q Consensus 97 i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G 171 (433)
++++++++.+.+ ++++. ||+||||||++|..|+ ++|.+..++++..++.++..+.+.+....+++++|||+|
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 999888887753 35677 9999999999998776 677666779999999998888888865568999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEC
Q 013952 172 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 251 (433)
Q Consensus 172 ~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~ 251 (433)
++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++.. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999888754447899999999999999999999999999976 4433 45677889999
Q ss_pred CEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952 252 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 329 (433)
Q Consensus 252 d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 329 (433)
|.+++|+|++|+..++.. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999987754 5666 56899999999999999999999998876555544444688899999999999998
Q ss_pred ccCCCCCccCCCC-CCeEEEeecccceEEecCCCC------cEEEEcCC-----Cc--cccCCcEEEEEE--eCCEEEEE
Q 013952 330 ATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVG------DTVLFGDN-----DL--ASATHKFGTYWI--KDGKVVGV 393 (433)
Q Consensus 330 ~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~------~~~~~~~~-----~~--~~~~~~~~~~~~--~~~~l~G~ 393 (433)
+.. ..|.. .+..+..+++..+..+|.++. ..+..... .. .....+|.|+++ ++++|+|+
T Consensus 303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~ 377 (427)
T TIGR03385 303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA 377 (427)
T ss_pred CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence 752 33432 223334456667777787652 11111111 10 123456888887 57999999
Q ss_pred EEecCC-hHHH-HHHHHHHHcCCCCCChhhhc
Q 013952 394 FLESGT-PEEN-KAIAKVARVQPSVESLDVLK 423 (433)
Q Consensus 394 ~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 423 (433)
|++|+. ++|+ +.++.+|++++|++|+..+.
T Consensus 378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~ 409 (427)
T TIGR03385 378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE 409 (427)
T ss_pred EEEccccHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 999998 8885 99999999999999777544
No 40
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=2.2e-44 Score=343.27 Aligned_cols=383 Identities=26% Similarity=0.398 Sum_probs=319.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+++|||.|++|..+..++.+......+|+++-.+ ...|+|..++.-+-.......+ .....+|+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~ 71 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE 71 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence 468999999999999999998854344579999999 8889988887654432222221 3456789999
Q ss_pred CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952 84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 163 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (433)
++++++.+..++.||+.++.|+.+.|+++.||.||+||||.|+.+| +||.+.++++.+++.++.+.+.+..+ ..+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~ 146 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK 146 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence 9999999999999999999999999999999999999999999998 79999999999999999999988844 356
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 243 (433)
+.+|||+|..|+|+|..|...|.++++++-.+.++.+.+|+.....|++.+++.|++++++...+++.. ++++.++++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence 789999999999999999999999999999999988889999999999999999999999999888876 778899999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHH
Q 013952 244 KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 322 (433)
Q Consensus 244 ~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~ 322 (433)
+||..+++|.|++|+|.+||.++... ++..++ +|+||++|||++|+|||+|+|+......+ .++..+..|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence 99999999999999999999999865 455554 89999999999999999999999876544 57788999999
Q ss_pred HHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC----CcEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecC
Q 013952 323 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 398 (433)
Q Consensus 323 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~ 398 (433)
++|.++.+...+. .-..+++..-+..++.+...|.-. ...+.+-|.. ...|.|+++++++|+|+.++|
T Consensus 298 v~a~hl~~~~~~~---y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~G- 369 (793)
T COG1251 298 VLADHLCGGEAEA---YEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYG- 369 (793)
T ss_pred HHHHHhccCcccc---cccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEe-
Confidence 9999999875431 112233333344555555445322 2244444444 568999999999999999998
Q ss_pred ChHHHHHHHHHHHcCCCCCChh
Q 013952 399 TPEENKAIAKVARVQPSVESLD 420 (433)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~ 420 (433)
..++-.++-.+|.++.+++++.
T Consensus 370 Dt~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 370 DTSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred ecccchHHHHHHhcCCCccccc
Confidence 5577788999999999887655
No 41
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.5e-45 Score=321.38 Aligned_cols=392 Identities=24% Similarity=0.305 Sum_probs=297.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-----CCCCCCCCccccccCCCCCCCCCC------cccccCC--
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-----VAPYERPALSKAYLFPEGTARLPG------FHVCVGS-- 71 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 71 (433)
.||++|||+||+|..||..+++.|++ -+.+|++ .+....|.+++.++......+... +....+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 59999999999999999999999998 7899996 244455667777776553322110 0000000
Q ss_pred ---------------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCC--cEEecceEEEccCCCccccCCCCCC
Q 013952 72 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE 134 (433)
Q Consensus 72 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~ 134 (433)
.+...+...+++.+|++..+.. .-++|..-.+.-.++ ..+.++++|+|||+.- ++.||+.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeE
Confidence 0111233456678888888743 333443333444444 4789999999999953 2321221
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHH
Q 013952 135 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 214 (433)
Q Consensus 135 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l 214 (433)
.+.+.+.++........ -|++++|||+|++|+|+..-+.++|.+||+++-.+.+.+. +|.++++.+++.|
T Consensus 193 -IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L 262 (506)
T KOG1335|consen 193 -IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVL 262 (506)
T ss_pred -ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHH
Confidence 24456666554444433 4899999999999999999999999999999999999887 8999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCC
Q 013952 215 ANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFK 285 (433)
Q Consensus 215 ~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~ 285 (433)
++.|++|+++++|..++.+.+|.+ .+++. ++ ++++||.+++++|++|-+.-+ +-++.. ..+.+.||..++
T Consensus 263 ~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~ 341 (506)
T KOG1335|consen 263 QKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ 341 (506)
T ss_pred HhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccc
Confidence 999999999999999998777643 34442 22 479999999999999988755 345555 578899999999
Q ss_pred CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCC---
Q 013952 286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV--- 362 (433)
Q Consensus 286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~--- 362 (433)
|.+|+||++||+...|+. +..|..||-.+.+.|.+... ...|..+|.+.++.|+++|+ |.++
T Consensus 342 t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~---hv~ynciP~v~ythPEvawV--G~TEeql 406 (506)
T KOG1335|consen 342 TKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHG---HVDYNCIPSVVYTHPEVAWV--GKTEEQL 406 (506)
T ss_pred ccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCc---ccccCCCCceeecccceeee--ccchhhH
Confidence 999999999999999865 55577889988888887643 38999999999999999999 6554
Q ss_pred ---CcEEEEcCCCcc--------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCC
Q 013952 363 ---GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS 428 (433)
Q Consensus 363 ---~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (433)
+..+..|..+.. ...++|.|+.. +++||||+||+|+.|.|+ +.+.+||.-+.+.+|.+..--+-++
T Consensus 407 keegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPT 486 (506)
T KOG1335|consen 407 KEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPT 486 (506)
T ss_pred HhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCc
Confidence 456777776654 34678999877 799999999999999996 9999999999999998865444333
No 42
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=7.7e-43 Score=322.14 Aligned_cols=311 Identities=26% Similarity=0.371 Sum_probs=250.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
+++|||||||++|+.+|..|.+.. ++.+|++||++ .+.| .+.+.... ...++. ......+...+++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~-~plL~eva-----~g~l~~------~~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLF-TPLLYEVA-----TGTLSE------SEIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCcccc-chhhhhhh-----cCCCCh------hheeccHHHHhcc
Confidence 578999999999999999999975 34569999999 4444 33332211 111110 0112345666665
Q ss_pred CC-cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh---
Q 013952 84 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 159 (433)
Q Consensus 84 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--- 159 (433)
.+ ++|+++ +|++||+++++|++.+++.+.||+||+|+|+.+..+. +||.. +..+.+++++++.+++..+..
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 55 999997 9999999999999999888999999999999987665 67754 667888999999998887751
Q ss_pred ----cCC----CcEEEECCCHHHHHHHHHHHhCC-------------CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC
Q 013952 160 ----KKN----GKAVVVGGGYIGLELSAALKINN-------------IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 218 (433)
Q Consensus 160 ----~~~----~~v~ViG~G~~g~e~a~~l~~~g-------------~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G 218 (433)
... .+++|+|+|++|+|+|..|.++- .+|+++++.+++++. +++++++..++.|++.|
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG 223 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence 111 26899999999999999886541 389999999999997 89999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhhh-cccccC-CCcEEeCCCCCC-CCCCeEEc
Q 013952 219 IKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAEN-KGGIETDDFFKT-SADDVYAV 294 (433)
Q Consensus 219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G~~p~~~~~~-~~~~~~-~g~i~vd~~~~t-~~~~vfa~ 294 (433)
|++++++.|++++. + .|.+++|+ +|+++.+|||+|.+++...-+ .+.+.+ .|++.||++||+ ++|+|||+
T Consensus 224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~ 297 (405)
T COG1252 224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA 297 (405)
T ss_pred CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence 99999999999986 3 57888887 499999999999999887665 356654 699999999998 99999999
Q ss_pred CccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCC
Q 013952 295 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 344 (433)
Q Consensus 295 Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p 344 (433)
|||+...+. ...++.++.|.+||+.+|+||.....++++.+|.+..
T Consensus 298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~ 343 (405)
T COG1252 298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD 343 (405)
T ss_pred eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 999988764 1123788999999999999999998887777777643
No 43
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-43 Score=303.57 Aligned_cols=387 Identities=18% Similarity=0.220 Sum_probs=283.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC-CC-------------CCCc
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT-AR-------------LPGF 65 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~-~~-------------~~~~ 65 (433)
.||++|||||..|+++|+++++.|.+ +.|+|.. . +....|.+.+-+++.... .. .+.|
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 68999999999999999999999988 8999877 1 222223333333322211 00 1111
Q ss_pred ccccCCC----CCC----CCHhHHHhCCcEEEeCceEEEEECCCCEEEeCCCc--EEecceEEEccCCCccccCCCCCCC
Q 013952 66 HVCVGSG----GER----LLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVEG 135 (433)
Q Consensus 66 ~~~~~~~----~~~----~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~g 135 (433)
.+..-.. ... .+...+.+.+|+++.+ +..-+++..-.|...++. .+++.+++||||++|..|+ |||
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---IpG 172 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IPG 172 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CCc
Confidence 1100000 000 1122234567888888 444455555566666663 3789999999999999997 676
Q ss_pred CCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH
Q 013952 136 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 215 (433)
Q Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~ 215 (433)
.+. -..++.+.+.+. .|++++|+|+|++++|+|..++.+|.+++++-|.+.+++. ||+.+++.+.+.++
T Consensus 173 ~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~ 241 (478)
T KOG0405|consen 173 AEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLE 241 (478)
T ss_pred hhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhh
Confidence 531 112222222222 5899999999999999999999999999999999999987 89999999999999
Q ss_pred hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCCCCCCCCe
Q 013952 216 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 291 (433)
Q Consensus 216 ~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~v 291 (433)
..||++|.++.++++....++.. .+.+..|....+|.++||+|+.||+.-+ +.++.+ .+|.|.||++.+||+|+|
T Consensus 242 ~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I 320 (478)
T KOG0405|consen 242 GRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSI 320 (478)
T ss_pred hcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCce
Confidence 99999999999999988656644 3444555555699999999999999855 446666 678899999999999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCCc-------
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------- 364 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------- 364 (433)
|++||+++.- .+...|+.+|+..+..+++.... ...+|..+|...+..|.+..+ |+++.+
T Consensus 321 ~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~-~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg~ 387 (478)
T KOG0405|consen 321 WAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD-TKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYGK 387 (478)
T ss_pred EEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC-CccccccCceEEEecCCcccc--cCCHHHHHHHhCc
Confidence 9999999865 34566888999999999985322 248999999999888888766 666522
Q ss_pred ---EEEEcCCCcc------ccCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhc
Q 013952 365 ---TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK 423 (433)
Q Consensus 365 ---~~~~~~~~~~------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 423 (433)
.++.....+. .....+.|+++ ++.+++|+||+|+.+.|| +-++.|+..|.|..|++...
T Consensus 388 ~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tV 458 (478)
T KOG0405|consen 388 GDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTV 458 (478)
T ss_pred cceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccce
Confidence 1222222221 22345566666 899999999999999997 99999999999999988543
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=322.84 Aligned_cols=301 Identities=21% Similarity=0.262 Sum_probs=232.9
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
++++|||||||+||+++|+.|.+.+. +|+|||++...+..+.+........... .....+...+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~~~l~~~~~g~~~~~-----------~~~~~~~~~~~~ 74 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFTPLLPQTTTGTLEFR-----------SICEPVRPALAK 74 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchhhhHHHhcccCCChH-----------HhHHHHHHHhcc
Confidence 35799999999999999998865444 4999999933333343322111000000 001123444556
Q ss_pred CCcEEEeCceEEEEECCCCEEEe----------CCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHH
Q 013952 84 KGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 153 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 153 (433)
.+++++.+ +|..||++++.|.+ .++.++.||+||||||+.+..++ +||.. ..++.++++.++..+
T Consensus 75 ~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~~ 149 (424)
T PTZ00318 75 LPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARGI 149 (424)
T ss_pred CCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHHH
Confidence 78899886 99999999999887 45668999999999999988776 57754 356778888888887
Q ss_pred HHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCeEEEEccCCccCCCCCCH
Q 013952 154 VEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFTA 204 (433)
Q Consensus 154 ~~~~~~~---------------~~~~v~ViG~G~~g~e~a~~l~~--------------~g~~V~li~~~~~~~~~~~~~ 204 (433)
++.+.++ ..++++|||+|++|+|+|..|.. .+.+|+++++.+.+++. +++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~~ 228 (424)
T PTZ00318 150 RKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FDQ 228 (424)
T ss_pred HHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CCH
Confidence 7665321 12489999999999999999875 37899999999988885 799
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCC
Q 013952 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF 283 (433)
Q Consensus 205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~ 283 (433)
++.+.+++.|++.||+++++++|.++.. + .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||++
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~ 302 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH 302 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC
Confidence 9999999999999999999999999975 2 4678889999999999999999985433445655 5789999999
Q ss_pred CC-CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952 284 FK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 335 (433)
Q Consensus 284 ~~-t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 335 (433)
|| +++|||||+|||+..+..+ ..+++..|.+||+++|.||.+...++
T Consensus 303 l~~~~~~~IfAiGD~a~~~~~~-----~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 303 LRVKPIPNVFALGDCAANEERP-----LPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred cccCCCCCEEEEeccccCCCCC-----CCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 99 5999999999999864321 12678889999999999999877654
No 45
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=6.2e-39 Score=305.08 Aligned_cols=305 Identities=22% Similarity=0.300 Sum_probs=235.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
+|||||||+||+.+|..|+++..+..+|+|||++ ...|... +.. +.... .. ..+......+++++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~-~~~g~----~~------~~~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPG-MIAGH----YS------LDEIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhH-HHhee----CC------HHHhcccHHHHHHhcC
Confidence 5899999999999999997653345679999999 5555432 211 11000 00 0011233456677789
Q ss_pred cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh-----c
Q 013952 86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K 160 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~ 160 (433)
++++.+ .|..||+++++|.+.++++++||+||||||+.+..|+ +|| ..++++.+++.+++....+.+.. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEG-AADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 999986 8999999999999999989999999999999998777 566 34677888888777663333321 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh----CC--CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952 161 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~----~g--~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~ 234 (433)
..++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++++.+.+++.+++.||++++++.+.+++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 35799999999999999999875 34 589999 55666665 7889999999999999999999999999864
Q ss_pred CCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCC-CCCCeEEcCccccccccccCcccccc
Q 013952 235 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE 312 (433)
Q Consensus 235 ~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~ 312 (433)
+ .+.+.+|+++++|.+|+|+|.+|+..+...++.. .+|++.||+++|| +.|||||+|||+..+..+. .+
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~ 290 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PK 290 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CC
Confidence 2 4677888899999999999999997666666666 5689999999998 9999999999997653211 15
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCccCCC
Q 013952 313 HVDHARKSAEQAVKTIMATEGGKTVTGYD 341 (433)
Q Consensus 313 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 341 (433)
.+..|..||+++|+||.....++++.+|.
T Consensus 291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~~ 319 (364)
T TIGR03169 291 AGVYAVRQAPILAANLRASLRGQPLRPFR 319 (364)
T ss_pred chHHHHHhHHHHHHHHHHHhcCCCCCCCc
Confidence 67789999999999999887776555544
No 46
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.7e-37 Score=289.82 Aligned_cols=293 Identities=20% Similarity=0.195 Sum_probs=212.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccccc-CCCCCCCCHhHH
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 81 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (433)
..+||+|||||||||+||.+|+++|++ ++++|.. ... .+......+.+|+..... +......+.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEHA 73 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCC--------ceecCceECCCCCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999987 8999854 111 011111112223221100 001122334555
Q ss_pred HhCCcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHH
Q 013952 82 KEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI 157 (433)
Q Consensus 82 ~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~ 157 (433)
..+++++..+ .+..++...+.+.+. +..++.||+||+|||+.|+.|+ +||.+ ...++.+.......
T Consensus 74 ~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~---i~g~~~~~~~~v~~~~~~~~~~------ 143 (321)
T PRK10262 74 TKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATCDGFF------ 143 (321)
T ss_pred HHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCC---CCCHHHcCCCcEEEeecCCHHH------
Confidence 5677777775 677787766654332 2347899999999999998777 45532 33454443333211
Q ss_pred HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013952 158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 237 (433)
Q Consensus 158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~ 237 (433)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+. .++.+.+.+++.+++.||++++++.+.++.. +++.
T Consensus 144 --~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~ 217 (321)
T PRK10262 144 --YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMG 217 (321)
T ss_pred --cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCcc
Confidence 158999999999999999999999999999999987653 3577888889999999999999999999986 2334
Q ss_pred EEEEEeCCC------cEEECCEEEEcccCccChhhhhcccccCCCcEEeCC-----CCCCCCCCeEEcCccccccccccC
Q 013952 238 VKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLYR 306 (433)
Q Consensus 238 ~~~v~~~~g------~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~vfa~Gd~~~~~~~~~~ 306 (433)
+..+++.++ +++++|.|++++|++|+..+++.++..++|+|.||+ +++|++|+|||+|||+..+.
T Consensus 218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~---- 293 (321)
T PRK10262 218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY---- 293 (321)
T ss_pred EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc----
Confidence 445655432 479999999999999999988766666778999997 78999999999999996542
Q ss_pred cccccccHHHHHHHHHHHHHHHhccC
Q 013952 307 EMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
+.+..|+.+|..||..|....
T Consensus 294 -----~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 294 -----RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred -----ceEEEEehhHHHHHHHHHHHH
Confidence 334447789999998887654
No 47
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=7e-37 Score=283.94 Aligned_cols=285 Identities=24% Similarity=0.313 Sum_probs=209.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHhHHHhC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKEK 84 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (433)
|||+|||||+||++||..|++.|.+ |+|+|++. + .+.+........+|++... .+......+.+.+++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~-~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 70 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGME-P------GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKF 70 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccC-C------CcceeecccccccCCCCCCCChHHHHHHHHHHHHHc
Confidence 6999999999999999999999987 99999872 1 1111111111222332210 0111223455667788
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCCC---CCCEEEecCHHHHHHHHHHHHh
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAIKA 159 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~ 159 (433)
+++++. ..|..+++.++ .+.+.++.++.||+||+|||+.|..|+ +||.+ ...++........ .
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~--------~ 138 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG---IPGEDEFLGRGVSYCATCDGP--------F 138 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC---CCChhhcCCccEEEeeecChh--------h
Confidence 999998 69999998765 456667778999999999999887766 45532 2344433222211 1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcE
Q 013952 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV 238 (433)
Q Consensus 160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~ 238 (433)
.++++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++++.+.++.. ++++
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~ 209 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNKV 209 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCcE
Confidence 1578999999999999999999999999999998876532 2 3345566676 999999999999986 4455
Q ss_pred EEEEeC-----CCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952 239 KEVKLK-----DGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE 312 (433)
Q Consensus 239 ~~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~ 312 (433)
..+++. +++++++|.+++|+|++|+.++++..+.. .+|++.||++++|++||||++|||+.... +
T Consensus 210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~ 280 (300)
T TIGR01292 210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------R 280 (300)
T ss_pred EEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------h
Confidence 455542 23579999999999999999887654444 56899999999999999999999997421 5
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 013952 313 HVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 313 ~~~~A~~~g~~aa~~i~~ 330 (433)
.+..|..+|+.||.+|..
T Consensus 281 ~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 281 QAVTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhhhHHHHHHHHHh
Confidence 678899999999999875
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.8e-37 Score=302.77 Aligned_cols=286 Identities=22% Similarity=0.295 Sum_probs=211.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.|||+||||||||++||.+|++.|++ |+|+++. . .+... ....++.+.+...+......+.+.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQVKDT----------VGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCccccC----------cCcccccccCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999988 9999765 1 11110 00111111111111122334556677
Q ss_pred hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHHH
Q 013952 83 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAI 157 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~ 157 (433)
+.+++++.++.|..++.+.+ .+.+.++.++.||++|+|||+.|+.|+ +||. ...+++.+.......
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~---ipG~~~~~~~~v~~~~~~~~~~------ 349 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLG---VPGEKEYIGKGVAYCPHCDGPF------ 349 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCC---CCCHHHcCCCeEEEeeccChhh------
Confidence 78999999989999887653 566677888999999999999987776 4553 223455443322211
Q ss_pred HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013952 158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG 236 (433)
Q Consensus 158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g 236 (433)
..+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++ .||++++++.+.++.. +++
T Consensus 350 --~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~ 419 (515)
T TIGR03140 350 --FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGD 419 (515)
T ss_pred --cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCC
Confidence 1578999999999999999999999999999988776532 2345666665 6999999999999986 335
Q ss_pred cEEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc
Q 013952 237 EVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 310 (433)
Q Consensus 237 ~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~ 310 (433)
++..|.+.+ + +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~-------- 491 (515)
T TIGR03140 420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY-------- 491 (515)
T ss_pred EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc--------
Confidence 666676643 2 469999999999999999988655555 56889999999999999999999998654
Q ss_pred cccHHHHHHHHHHHHHHHhcc
Q 013952 311 VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 311 ~~~~~~A~~~g~~aa~~i~~~ 331 (433)
+++..|+.+|..||.+|...
T Consensus 492 -~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 492 -KQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred -ceEEEEEccHHHHHHHHHHH
Confidence 23445788999999988754
No 49
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-37 Score=266.22 Aligned_cols=286 Identities=24% Similarity=0.274 Sum_probs=218.8
Q ss_pred cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEE
Q 013952 110 LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 189 (433)
Q Consensus 110 ~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~ 189 (433)
+.+++++++||||.+|+.|+ |||.. +--.+++++..... .|.+.+|||+|++++|+|.+|+-.|.+|+
T Consensus 158 ~~~ta~~fvIatG~RPrYp~---IpG~~-Ey~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vt 225 (503)
T KOG4716|consen 158 RFLTAENFVIATGLRPRYPD---IPGAK-EYGITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVT 225 (503)
T ss_pred EEeecceEEEEecCCCCCCC---CCCce-eeeecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcE
Confidence 46899999999999999888 67743 22334444443332 47788999999999999999999999999
Q ss_pred EEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccCh
Q 013952 190 MVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 190 li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g--~~i~~d~vi~a~G~~p~~ 264 (433)
++.|+- +++. ||.++++.+.+.+++.||+|.....+.+++.-++++. .|...+ + -+-++|.|+||+|+++.+
T Consensus 226 VmVRSI-~LrG-FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 226 VMVRSI-LLRG-FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred EEEEEe-eccc-ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccch
Confidence 998863 4443 8999999999999999999999988888887666652 333322 2 245789999999999998
Q ss_pred hhh---hccccc--CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCCCCccC
Q 013952 265 SLF---KGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 339 (433)
Q Consensus 265 ~~~---~~~~~~--~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 339 (433)
+-+ +.++.. ..+-|.+|+.-+|++|+|||+||+..... ++...|++.|+..|+.+++.... ...
T Consensus 303 ~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q--~~d 371 (503)
T KOG4716|consen 303 DDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQ--LMD 371 (503)
T ss_pred hhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcce--eee
Confidence 755 345555 46789999999999999999999987543 66778999999999999987544 489
Q ss_pred CCCCCeEEEeecccceEEecCCCCcE---------EEE-cCCCcc-------ccCCcEEEEEE---eCCEEEEEEEecCC
Q 013952 340 YDYLPYFYSRAFDLSWQFYGDNVGDT---------VLF-GDNDLA-------SATHKFGTYWI---KDGKVVGVFLESGT 399 (433)
Q Consensus 340 ~~~~p~~~~~~~~~~~~~~g~~~~~~---------~~~-~~~~~~-------~~~~~~~~~~~---~~~~l~G~~~~g~~ 399 (433)
|..+|...++-++.... |+++.++ ..+ +...|. +...+|.|.+. .+.||+|.|++||+
T Consensus 372 y~~V~TTVFTPLEy~c~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPn 449 (503)
T KOG4716|consen 372 YDDVATTVFTPLEYGCV--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPN 449 (503)
T ss_pred ccCCceeeecchhcccc--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCc
Confidence 99999877765655544 7665211 111 111111 23446667665 67899999999999
Q ss_pred hHHH-HHHHHHHHcCCCCCChhhhc
Q 013952 400 PEEN-KAIAKVARVQPSVESLDVLK 423 (433)
Q Consensus 400 ~~~~-~~~~~~~~~~~~~~~~~~~~ 423 (433)
|+|. +-++.|++-++|..||+...
T Consensus 450 AgEV~QGfaaAlk~glt~~~l~nti 474 (503)
T KOG4716|consen 450 AGEVIQGFAAALKCGLTKKDLDNTI 474 (503)
T ss_pred hhHHHHHHHHHHHhcccHHHHhhcc
Confidence 9996 99999999999999877543
No 50
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-36 Score=270.78 Aligned_cols=288 Identities=23% Similarity=0.290 Sum_probs=219.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCccc-ccCCCCCCCCHhHHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWYK 82 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (433)
.|||+|||||||||+||.++++.+++. ++|+++. .. +.+.......++|+++. ..+..+.+...+...
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~g--------g~~~~~~~venypg~~~~~~g~~L~~~~~~~a~ 72 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPG--------GQLTKTTDVENYPGFPGGILGPELMEQMKEQAE 72 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcC--------CccccceeecCCCCCccCCchHHHHHHHHHHHh
Confidence 699999999999999999999998763 4555555 22 11111224566677665 344444555666667
Q ss_pred hCCcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc
Q 013952 83 EKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 160 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (433)
..++++.. ..|..++... ..|.+.++. +++++||||||..++.|..++-+.....+++++..++. .+
T Consensus 73 ~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------- 141 (305)
T COG0492 73 KFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------- 141 (305)
T ss_pred hcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc-------
Confidence 78999988 5888888765 356666665 99999999999998887743222233467777776544 22
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK 239 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~ 239 (433)
++++++|||+|.+++|.|.+|.+.+.+|++++|.+.+.+ . +.+.+.+++. +|++++++.+.++.. ++ +.
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v~ 211 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILG--DD-VE 211 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEec--Cc-cc
Confidence 588999999999999999999999999999999987754 2 3344445544 899999999999987 43 56
Q ss_pred EEEeCCC----cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccccH
Q 013952 240 EVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 314 (433)
Q Consensus 240 ~v~~~~g----~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~ 314 (433)
+|.+.+. +.+.+|-+++++|..|++.++.....+ ++|+|.+|+.++||+|+|||+||++..+. +++
T Consensus 212 ~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rqi 282 (305)
T COG0492 212 GVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQI 282 (305)
T ss_pred eEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cEE
Confidence 6777653 378999999999999999988665444 78999999999999999999999998764 356
Q ss_pred HHHHHHHHHHHHHHhccC
Q 013952 315 DHARKSAEQAVKTIMATE 332 (433)
Q Consensus 315 ~~A~~~g~~aa~~i~~~~ 332 (433)
..|..+|..||.++....
T Consensus 283 ~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 283 ATAAGDGAIAALSAERYL 300 (305)
T ss_pred eehhhhHHHHHHHHHHHh
Confidence 667788888888776543
No 51
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.5e-36 Score=295.68 Aligned_cols=288 Identities=23% Similarity=0.285 Sum_probs=214.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
.|||+||||||||++||.+|++.|++ ++|+++. ...+. ......+++++....+......+...+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVL---------DTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeee---------ccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999998 9999876 11110 01111222222222222233455667778
Q ss_pred CCcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHHHH
Q 013952 84 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIK 158 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~ 158 (433)
++++++.++.|..+++.. ..|.+.++.++.||++|+|||+.|+.++ +||. ....++.....+...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~---ipG~~~~~~~~v~~~~~~~~~~------- 348 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMN---VPGEDEYRNKGVAYCPHCDGPL------- 348 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCC---CCCHHHhcCceEEEeeccCchh-------
Confidence 899999988999998764 3566777888999999999999988776 4543 234454443222211
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013952 159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 237 (433)
Q Consensus 159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~ 237 (433)
.++++++|||+|++|+|+|..|+..+.+|+++.+.+.+.. + +.+.+.+.+ .||++++++.+.++.. ++++
T Consensus 349 -~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~ 419 (517)
T PRK15317 349 -FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK 419 (517)
T ss_pred -cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence 1578999999999999999999999999999998876532 2 334555554 6999999999999987 3466
Q ss_pred EEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCccccc
Q 013952 238 VKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 311 (433)
Q Consensus 238 ~~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~ 311 (433)
+..+++.+ + +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~--------- 490 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY--------- 490 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------
Confidence 66666542 3 359999999999999999988655555 56889999999999999999999998754
Q ss_pred ccHHHHHHHHHHHHHHHhccC
Q 013952 312 EHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 312 ~~~~~A~~~g~~aa~~i~~~~ 332 (433)
+.+..|..+|..||.++...+
T Consensus 491 k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 491 KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CEEEEhhhhHHHHHHHHHHHH
Confidence 346668889999998887643
No 52
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.1e-35 Score=295.13 Aligned_cols=291 Identities=23% Similarity=0.294 Sum_probs=205.4
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 81 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
|...|||+|||||||||+||.+|++.|++ |+|+|++. + .+.+.......++++.....+......+...+
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~--~-----GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDD--F-----GGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCC--C-----CceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 44569999999999999999999999987 99999871 0 11111111111222221111111123344556
Q ss_pred HhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccccCCCCCCCC---CCCCEEEecCHHHHHHHHHH
Q 013952 82 KEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEA 156 (433)
Q Consensus 82 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~ 156 (433)
++.+++++. ..|..++.+++ .+.+.++ .+.+++||+|||+.|+.|+ ++|. ...+++++.......
T Consensus 71 ~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~---ipG~~~~~~~~v~~~~~~~~~~----- 140 (555)
T TIGR03143 71 QDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG---FPGEEEFTGRGVAYCATCDGEF----- 140 (555)
T ss_pred HHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC---CCCHHHhCCceEEEEeecChhh-----
Confidence 678999865 58888887654 3555444 6899999999999998877 4553 234555543332211
Q ss_pred HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013952 157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 236 (433)
Q Consensus 157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g 236 (433)
..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.. ..... .+.+++.||++++++.|.++.. ++
T Consensus 141 ---~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~ 209 (555)
T TIGR03143 141 ---FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DD 209 (555)
T ss_pred ---cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CC
Confidence 1589999999999999999999999999999999876532 33332 2334567999999999999975 44
Q ss_pred cEEEEEe---CCCcE----EECCE----EEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccc
Q 013952 237 EVKEVKL---KDGRT----LEADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 304 (433)
Q Consensus 237 ~~~~v~~---~~g~~----i~~d~----vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~ 304 (433)
.+..+.+ .+|+. +++|. |++++|++|++.+++..+.+ .+|+|.||+++||+.|+|||+|||+....
T Consensus 210 ~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~-- 287 (555)
T TIGR03143 210 GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL-- 287 (555)
T ss_pred cEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc--
Confidence 4433332 34643 23676 99999999999998776666 46889999999999999999999975321
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 305 YREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
+.+..|..+|+.||.+|...+
T Consensus 288 -------~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 288 -------RQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred -------chheeHHhhHHHHHHHHHHHH
Confidence 356679999999999986443
No 53
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-36 Score=266.70 Aligned_cols=407 Identities=23% Similarity=0.357 Sum_probs=308.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCc--ccccCCC--CCCCCHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGF--HVCVGSG--GERLLPE 79 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~ 79 (433)
+.-.+|||+|.+..++++..+... ..+.|.+|..+ ..||.||.+++.+|+...+...-.+ ....|.. ++.....
T Consensus 178 hvp~liigggtaAfaa~rai~s~d-a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSND-ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCC-CCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 456899999998776666555443 35679999999 9999999999999877655332211 1112211 0111111
Q ss_pred H---------HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCC-CCCCCCCCEEEecCHHH
Q 013952 80 W---------YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG-VEGADAKNIFYLREIDD 149 (433)
Q Consensus 80 ~---------~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~-~~g~~~~~v~~~~~~~~ 149 (433)
+ ...-||-+..+..|..|+.+++.|.+.||.++.||.++||||.+|...+.+. .+......+..++...|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 1 1235789999999999999999999999999999999999999998776522 11112456788889999
Q ss_pred HHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952 150 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 225 (433)
Q Consensus 150 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~ 225 (433)
..++.+.+.+ .+++.|||+|.+|-|+|..|.+. |.+|+-+......+...+++.++++-.+.+++.||.++.+.
T Consensus 337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 9999888875 48999999999999999998764 67888777776667777889999999999999999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc--CCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952 226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPM 302 (433)
Q Consensus 226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~ 302 (433)
.|.++..+..+ ..+++.||.++..|+|++|+|-.||.+++.. +++. .-|++.||..|+. ..|||++||++...+
T Consensus 415 ~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 99998773333 5688999999999999999999999999954 5665 4589999999998 689999999999998
Q ss_pred cccCcccccccHHHHHHHHHHHHHHHhccCCCCCccCCCCCCeEEEee-cccceEEecCCCCc----EE-----------
Q 013952 303 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNVGD----TV----------- 366 (433)
Q Consensus 303 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~~~----~~----------- 366 (433)
...|.++ .+++.+|.-.||.|++||.+.. .+|....+||+.. |++.+..+|+-..- .+
T Consensus 492 ~~LGrRR-VehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~ 565 (659)
T KOG1346|consen 492 GVLGRRR-VEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVD 565 (659)
T ss_pred cccccee-ccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchh
Confidence 8777654 4899999999999999999865 6777788899764 55655555543210 00
Q ss_pred ---EEcCC-----------------Ccc--------ccCCcEE---EEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCC
Q 013952 367 ---LFGDN-----------------DLA--------SATHKFG---TYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 415 (433)
Q Consensus 367 ---~~~~~-----------------~~~--------~~~~~~~---~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~ 415 (433)
...+. .+. .+...|+ .||++|+.|+|+.+|. -=.++..+..+|.++..
T Consensus 566 ~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN-~Fnr~~~AR~II~d~kk 644 (659)
T KOG1346|consen 566 QLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN-LFNRIGLARTIINDNKK 644 (659)
T ss_pred hhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehh-hhccchhhHHHhccccc
Confidence 00011 000 1123343 4677999999999996 33488999999999999
Q ss_pred CCChhhhcc
Q 013952 416 VESLDVLKN 424 (433)
Q Consensus 416 ~~~~~~~~~ 424 (433)
.+|+.+++-
T Consensus 645 ~ddlnEvAK 653 (659)
T KOG1346|consen 645 YDDLNEVAK 653 (659)
T ss_pred hhhHHHHHh
Confidence 988876553
No 54
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.1e-35 Score=286.31 Aligned_cols=286 Identities=20% Similarity=0.241 Sum_probs=206.0
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..++|+|||||+||+++|..|++.|++ |+|+|+...+. +.+.. .++.+.. .........+.+++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~G-------G~l~~----gip~~~~--~~~~~~~~~~~l~~ 195 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPG-------GVVTY----GIPEFRL--PKEIVVTEIKTLKK 195 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCC-------cEeee----cCCCccC--CHHHHHHHHHHHHh
Confidence 357999999999999999999999987 99999972111 11110 0111110 00111223455677
Q ss_pred CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH----
Q 013952 84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 158 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~---- 158 (433)
.+++++.+..+ ++.+.+.+. ...||+||+|||+ .|+.++ +||.+..++++..++.....+.....
T Consensus 196 ~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~ 265 (449)
T TIGR01316 196 LGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPHA 265 (449)
T ss_pred CCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhccccccccc
Confidence 89999988643 234444333 3579999999998 677666 67877778887665543322221110
Q ss_pred ---hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952 159 ---AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235 (433)
Q Consensus 159 ---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~ 235 (433)
...+++++|||+|++|+|+|..+.+.|.+|+++.+.+..... .. ....+.+++.||++++++.+.++..+++
T Consensus 266 ~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~~ 340 (449)
T TIGR01316 266 DTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDEE 340 (449)
T ss_pred CCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEcCC
Confidence 124689999999999999999999999999999987642111 11 2233567889999999999999976455
Q ss_pred CcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEE
Q 013952 236 GEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYA 293 (433)
Q Consensus 236 g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa 293 (433)
|++..|++. +| .++++|.||+|+|+.|+..+++. ++.. .+|+|.||++++|+.|+|||
T Consensus 341 g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA 420 (449)
T TIGR01316 341 GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFA 420 (449)
T ss_pred CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEE
Confidence 666666543 22 26999999999999999987753 5666 46889999999999999999
Q ss_pred cCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952 294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 330 (433)
+|||+..+ .++..|+.+|+.||.+|..
T Consensus 421 ~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 421 GGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred ecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 99998754 4678899999999999865
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.8e-35 Score=284.74 Aligned_cols=289 Identities=22% Similarity=0.244 Sum_probs=207.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+||+||||||||++||.+|++.|++ |+|+|+...+ ++++. ..+|.+... .........+++++.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~-------GG~l~----~gip~~~l~-~~~~~~~~~~~~~~~ 204 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEP-------GGVLV----YGIPEFRLP-KETVVKKEIENIKKL 204 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCC-------CCeee----ecCCCccCC-ccHHHHHHHHHHHHc
Confidence 57999999999999999999999987 9999987111 11111 111211110 000122334667788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCC-cEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH-----
Q 013952 85 GIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----- 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~----- 157 (433)
|++++.++.+ .+.+.+.+. ..+.||+|+||||+ .|+.++ +||.+..++++..++.....+....
T Consensus 205 gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (464)
T PRK12831 205 GVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPEYD 275 (464)
T ss_pred CCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccccc
Confidence 9999998654 223333332 24679999999998 577766 6888778888776654433221110
Q ss_pred -HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952 158 -KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235 (433)
Q Consensus 158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~ 235 (433)
....+++|+|||+|++|+|+|..+.+.|.+|+++.+.+. .++ ... ..+ +.+++.||++++++.+.++..+++
T Consensus 276 ~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 276 TPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGDEN 349 (464)
T ss_pred CcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEecCC
Confidence 012579999999999999999999999999999988653 222 111 111 335778999999999999986556
Q ss_pred CcEEEEEeC------------------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCCC-CCCCCCCe
Q 013952 236 GEVKEVKLK------------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSADDV 291 (433)
Q Consensus 236 g~~~~v~~~------------------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~~v 291 (433)
|++..+++. +| .++++|.||+|+|+.|+..++.. ++.. .+|+|.||++ ++|+.|+|
T Consensus 350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgV 429 (464)
T PRK12831 350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGV 429 (464)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCE
Confidence 766655542 22 26999999999999999987753 5655 5688999998 99999999
Q ss_pred EEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952 292 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333 (433)
Q Consensus 292 fa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (433)
||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 430 fAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 430 FAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred EEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998765 4578899999999999987653
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.4e-33 Score=288.38 Aligned_cols=288 Identities=22% Similarity=0.253 Sum_probs=207.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+||+||||||||++||.+|++.|++ |+|+|+...+ ++++. ..+|.+... ........+++++.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~-------GG~l~----~gip~~rlp--~~~~~~~~~~l~~~ 494 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEI-------GGVLK----YGIPEFRLP--KKIVDVEIENLKKL 494 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCC-------CCeee----ecCCCCCCC--HHHHHHHHHHHHHC
Confidence 57999999999999999999999987 9999987111 11111 112221110 01112334567788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------ 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------ 157 (433)
|+++..++.+ ++.+.+++.....||+||||||+ .|+.++ +||.+.+++++..++.....+....
T Consensus 495 gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~ 565 (752)
T PRK12778 495 GVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDSDT 565 (752)
T ss_pred CCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhcccccccccC
Confidence 9999988543 33444544445779999999998 477666 6888778888766554432221110
Q ss_pred HhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013952 158 KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 235 (433)
Q Consensus 158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~ 235 (433)
....+++|+|||+|++|+|+|..+.+.|.+ |+++.+.+. .++. ...+ .+.+++.||++++++.+.++..+++
T Consensus 566 ~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~ 639 (752)
T PRK12778 566 PIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE-----VKHAKEEGIEFLTLHNPIEYLADEK 639 (752)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH-----HHHHHHcCCEEEecCcceEEEECCC
Confidence 012468999999999999999999999987 999988754 2222 1111 1346788999999999999976556
Q ss_pred CcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCCCCCCCCCCeE
Q 013952 236 GEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADDVY 292 (433)
Q Consensus 236 g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~vf 292 (433)
+++..+++. +| .++++|.||+|+|++|+..++.. ++.. .+|+|.||++++|+.|+||
T Consensus 640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVf 719 (752)
T PRK12778 640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIY 719 (752)
T ss_pred CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEE
Confidence 766666542 12 35999999999999999876543 4555 5688999999999999999
Q ss_pred EcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952 293 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333 (433)
Q Consensus 293 a~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (433)
|+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 720 A~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 720 AGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999764 4578899999999999986543
No 57
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=8.1e-33 Score=281.20 Aligned_cols=281 Identities=24% Similarity=0.322 Sum_probs=194.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+||||||||++||.+|++.|++ |+|+|+...+. +.+. ..+|++.. .........+++.+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~G-------G~lr----~~IP~~Rl--p~evL~~die~l~~~ 602 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAG-------GVVK----NIIPQFRI--PAELIQHDIEFVKAH 602 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccC-------ccee----eecccccc--cHHHHHHHHHHHHHc
Confidence 47999999999999999999999987 99999882221 1111 11222211 001112234667778
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecC-HHHHHHHHHHHHhcCC
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLRE-IDDADKLVEAIKAKKN 162 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~ 162 (433)
|++++.++.+ .++ +.+.....||+||||||+.+. .++ ++|.+ .++++..+ +.+.......+ ..+
T Consensus 603 GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~~G 668 (1019)
T PRK09853 603 GVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--KLG 668 (1019)
T ss_pred CCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--cCC
Confidence 9999998765 222 223345679999999999753 333 56654 45553222 11111111111 147
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-C-CeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE-
Q 013952 163 GKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV- 238 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~-g-~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~- 238 (433)
++|+|||+|.+|+|+|..+.+. | .+|+++.+.+. .++. .+.+ +.+.+ +.||++++++.+.++.. ++++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~Al-eeGVe~~~~~~p~~I~~--dG~l~ 740 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEAL-EDGVEFKELLNPESFDA--DGTLT 740 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHHH-HcCCEEEeCCceEEEEc--CCcEE
Confidence 9999999999999999998887 4 48999988763 3332 2333 33333 47999999998888863 3322
Q ss_pred ---------------EEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCCCCCCCCCeEEcCcccccc
Q 013952 239 ---------------KEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 301 (433)
Q Consensus 239 ---------------~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~ 301 (433)
..+...++.++++|.||+|+|.+|+.+++.. ++.. .+|++.||++++|+.|+|||+|||+..+
T Consensus 741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp 820 (1019)
T PRK09853 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820 (1019)
T ss_pred EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc
Confidence 2223334468999999999999999998753 5655 5688999999999999999999998765
Q ss_pred ccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (433)
.++..|+.+|+.||.+|.+...
T Consensus 821 ----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 821 ----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 4678899999999999987653
No 58
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=4e-31 Score=256.73 Aligned_cols=386 Identities=25% Similarity=0.258 Sum_probs=292.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 86 (433)
Q Consensus 8 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (433)
++|||+|++|+++|..+++... ..+++++..+ ...|.++.++............. ..... +..+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL----------RYPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccCCHHHh----------cccch-hHHhhCC
Confidence 5899999999999999888753 5678888888 67777766655443322111110 01111 2256789
Q ss_pred EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952 87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 166 (433)
Q Consensus 87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (433)
++..++.+..++++.+.+.+.++ ++.||+|++|||++|..++ +.....+++.+...++..+...... .++++
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 140 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV 140 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence 99999999999999999999998 8999999999999998765 3445678999999999888777653 58999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE--EEeC
Q 013952 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE--VKLK 244 (433)
Q Consensus 167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~--v~~~ 244 (433)
|+|+|++|+|+|..+.+.|++|++++..+++++..+.+++.+.+.+.+++.||+++++..+.+++... +.... +...
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~ 219 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGI 219 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEe
Confidence 99999999999999999999999999999998863228999999999999999999999999998732 22222 5777
Q ss_pred CCcEEECCEEEEcccCccChhhhhccc--cc-CCCcEEeCCCCCCC-CCCeEEcCccccccccccCcccccccHHHHHHH
Q 013952 245 DGRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 320 (433)
Q Consensus 245 ~g~~i~~d~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~ 320 (433)
++..+++|.+++++|.+||..+.+... .. ..|++.||++++|+ .++||++|||+..+....+.....+++..+..+
T Consensus 220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~ 299 (415)
T COG0446 220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA 299 (415)
T ss_pred CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence 888999999999999999988887654 33 67789999999997 999999999999887654444556889999999
Q ss_pred HHHHHHHHhccCCCCCccCCCCCCeEEEeecccceEEecCCCC-c-------EEEEcCCCcc--ccCCc--EEEEEE--e
Q 013952 321 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-D-------TVLFGDNDLA--SATHK--FGTYWI--K 386 (433)
Q Consensus 321 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~-------~~~~~~~~~~--~~~~~--~~~~~~--~ 386 (433)
++.++.++.+. . ......++.++..++......|.+.. + ....+..... .+... ..+... .
T Consensus 300 ~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (415)
T COG0446 300 GRIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDAD 374 (415)
T ss_pred hHHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence 99999999865 1 33455677888888888887787764 1 1111111111 01111 122222 6
Q ss_pred CCEEEEEEEecCChHHHHHHHHHHHcCCCCCChh
Q 013952 387 DGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 420 (433)
Q Consensus 387 ~~~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 420 (433)
+++++|++. -.....+..+..+++.+.++.++.
T Consensus 375 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 407 (415)
T COG0446 375 TGRILGGQE-LEVLKRIGALALAIGLGDTVAELD 407 (415)
T ss_pred ccceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence 788888888 222334688888888888887443
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.4e-32 Score=266.49 Aligned_cols=287 Identities=22% Similarity=0.249 Sum_probs=199.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||++|+++|..|++.|++ |+|+|+.... . +++.. .+|.+.. .........+++++.
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~------g-G~l~~----gip~~~~--~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKA------G-GLLRY----GIPEFRL--PKDIVDREVERLLKL 203 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCC------C-cEeec----cCCCccC--CHHHHHHHHHHHHHc
Confidence 47999999999999999999999987 9999988211 1 11100 1111110 001122345667788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh-cCC
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KKN 162 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~ 162 (433)
+++++.++.+. +.+.+.+. .+.||+||+|||+. +..++ ++|.+..++++..++............ ..+
T Consensus 204 gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g 273 (457)
T PRK11749 204 GVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPVG 273 (457)
T ss_pred CCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCCC
Confidence 99999886541 22333333 37899999999985 55444 677666677764433222111000011 157
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952 163 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 240 (433)
++++|||+|.+|+|+|..+.+.|. +|+++.+.+. .++. ... ..+.+++.||++++++.+.++..+ ++.+.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~ 346 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVTG 346 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceEE
Confidence 899999999999999999999997 8999988654 2332 222 345678899999999999999863 333233
Q ss_pred EEe-------------------CCCcEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-CCCCCCCCeEEcCcc
Q 013952 241 VKL-------------------KDGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGDV 297 (433)
Q Consensus 241 v~~-------------------~~g~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~vfa~Gd~ 297 (433)
|.+ .+++++++|.||+|+|++|+..++.. ++.. .+|+|.||+ +++|+.|+|||+|||
T Consensus 347 v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~ 426 (457)
T PRK11749 347 VEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDI 426 (457)
T ss_pred EEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCc
Confidence 332 12347999999999999999877642 4555 568899998 899999999999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952 298 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 334 (433)
+..+ .++..|+.+|+.||.+|...+.+
T Consensus 427 ~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 427 VTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9543 46788999999999999876644
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.6e-32 Score=282.15 Aligned_cols=288 Identities=19% Similarity=0.195 Sum_probs=206.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||||||+||.+|++.|++ |+|+|+.. .+ ++++. ..+|.++.. ........+.+++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~------~~-GG~l~----yGIP~~rlp--~~vi~~~i~~l~~~ 369 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFH------DL-GGVLR----YGIPEFRLP--NQLIDDVVEKIKLL 369 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCC------CC-CceEE----ccCCCCcCh--HHHHHHHHHHHHhh
Confidence 57999999999999999999999998 99999881 11 22221 123332210 11122334567788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------ 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------ 157 (433)
|++++.++.+ ++.+++++.....||+|+||||+. |+.++ +||.+..+|++..++.....+....
T Consensus 370 Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~ 440 (944)
T PRK12779 370 GGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYET 440 (944)
T ss_pred cCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhccccccccc
Confidence 9999987543 445666665556899999999994 76666 7888888898776655443322111
Q ss_pred --HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952 158 --KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234 (433)
Q Consensus 158 --~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~ 234 (433)
....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++. ....+.+ ..+.||+++++..+.++..++
T Consensus 441 ~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~~~e~~~-a~eeGV~~~~~~~p~~i~~d~ 514 (944)
T PRK12779 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----RVEELHH-ALEEGINLAVLRAPREFIGDD 514 (944)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----cHHHHHH-HHHCCCEEEeCcceEEEEecC
Confidence 112478999999999999999999999999999987753 2221 1122333 346799999999999997632
Q ss_pred C-CcEEEEEe---------C--------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-CCCCCCCC
Q 013952 235 D-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADD 290 (433)
Q Consensus 235 ~-g~~~~v~~---------~--------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~ 290 (433)
+ +++..+++ . +| .+++||.||+|+|+.|+..+... ++.. .+|.|.||+ .++|+.|+
T Consensus 515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg 594 (944)
T PRK12779 515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG 594 (944)
T ss_pred CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence 2 34544432 1 12 36999999999999999765433 4555 568899997 58999999
Q ss_pred eEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952 291 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333 (433)
Q Consensus 291 vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (433)
|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 595 VFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 595 VYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred EEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999765 4678899999999999987654
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=4.5e-32 Score=255.89 Aligned_cols=289 Identities=24% Similarity=0.298 Sum_probs=198.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||+|++|+++|..|++.|++ |+++|+...+. +++... ++.... .........+.+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~g-------g~~~~~----~~~~~~--~~~~~~~~~~~l~~~ 81 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPG-------GLMLFG----IPEFRI--PIERVREGVKELEEA 81 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCC-------ceeeec----Cccccc--CHHHHHHHHHHHHhC
Confidence 57999999999999999999999887 99999982111 111000 000000 000011233445567
Q ss_pred CcEEEeCceEEEEEC----CCC-----EEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCHHHHHHHH
Q 013952 85 GIELILSTEIVRADI----ASK-----TLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLV 154 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~----~~~-----~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 154 (433)
++++..++.+..++. ... .+..+ +..++||+||||||+ .+..|+ +||.+..++++..+ ....+.
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~~--~~~~~~ 155 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSALE--YLFRIR 155 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHHH--HHHHhh
Confidence 999998877654432 011 11111 124789999999999 466666 67766667775432 222222
Q ss_pred HH---------HHhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 013952 155 EA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 224 (433)
Q Consensus 155 ~~---------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~ 224 (433)
.. .....+++++|+|+|++|+|+|..|.+.|.+ |+++.+.+..... . .....+.++++||+++++
T Consensus 156 ~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 156 AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFLEL 230 (352)
T ss_pred hccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEeec
Confidence 11 0011358999999999999999999999987 9999876543211 1 133445688999999999
Q ss_pred CeEEEEEecCCCcEEEEEe--------------------CCCcEEECCEEEEcccCccChhhhh--ccccc-CCCcEEeC
Q 013952 225 TVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIETD 281 (433)
Q Consensus 225 ~~v~~i~~~~~g~~~~v~~--------------------~~g~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i~vd 281 (433)
+.+.+++. ++++..+++ .+++++++|.+|+++|++|+..+.. .++.. .+|++.||
T Consensus 231 ~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd 308 (352)
T PRK12770 231 VTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVD 308 (352)
T ss_pred cCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeC
Confidence 99999875 344444432 1235799999999999999988765 34555 56789999
Q ss_pred CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 282 ~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
++++|+.|+||++|||+..+ ..+..|+.+|+.||.+|...+
T Consensus 309 ~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 309 EKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998755 457889999999999997654
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=3.4e-31 Score=258.68 Aligned_cols=293 Identities=22% Similarity=0.265 Sum_probs=198.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||+||+++|..|++.|++ |+|+|+...+ . +++. ..+|.+.. .........+++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~------G-G~l~----~gip~~~~--~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRI------G-GLLR----YGIPDFKL--EKEVIDRRIELMEAE 206 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCC------C-ceee----ecCCcccC--CHHHHHHHHHHHHhC
Confidence 47999999999999999999999987 9999988111 1 1111 01111110 000112234567788
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHH--HHHHH--H--
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I-- 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~--~-- 157 (433)
|++++.++.+. .+.. . +.....||+|++|||+. ++.++ ++|.+..++++..++.... .+... .
T Consensus 207 gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~ 276 (471)
T PRK12810 207 GIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEPF 276 (471)
T ss_pred CcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhcccccccc
Confidence 99999986542 1111 1 11235799999999997 55555 6787777888643321110 00000 0
Q ss_pred HhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCCCCH----HH-HHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952 158 KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----DI-AAFYEGYYANKGIKIIKGTVAVGFT 231 (433)
Q Consensus 158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~~~~----~~-~~~l~~~l~~~GV~v~~~~~v~~i~ 231 (433)
....+++++|||+|++|+|+|..+.+.|. +|+.++..+......++. .. .....+.+++.||++++++.+.++.
T Consensus 277 ~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 277 ISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 01257899999999999999998888885 788766554322211000 00 1113455778899999999999997
Q ss_pred ecCCCcEEEEEeC-----CC---------cEEECCEEEEcccCccChh-hhh-ccccc-CCCcEEeC-CCCCCCCCCeEE
Q 013952 232 TNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETD-DFFKTSADDVYA 293 (433)
Q Consensus 232 ~~~~g~~~~v~~~-----~g---------~~i~~d~vi~a~G~~p~~~-~~~-~~~~~-~~g~i~vd-~~~~t~~~~vfa 293 (433)
. +++++..|++. +| .++++|.||+|+|++|+.. +++ .++.. .+|.+.+| ++++|+.|+|||
T Consensus 357 ~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa 435 (471)
T PRK12810 357 G-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFA 435 (471)
T ss_pred c-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEE
Confidence 5 46776655432 22 4799999999999999853 543 34555 46889998 799999999999
Q ss_pred cCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952 294 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334 (433)
Q Consensus 294 ~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 334 (433)
+|||+..+ .++..|+.+|+.||.+|...+.+
T Consensus 436 ~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 436 AGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred ccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999754 45778999999999999877654
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=2.7e-31 Score=277.08 Aligned_cols=290 Identities=21% Similarity=0.206 Sum_probs=203.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||||||+||.+|+++|++ |+|+|+...+ ++++. ..+|.+.. ..+......+.+++.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~-------GG~l~----~gip~~rl--~~e~~~~~~~~l~~~ 493 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVV-------GGVLQ----YGIPSFRL--PRDIIDREVQRLVDI 493 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCC-------cceee----ccCCccCC--CHHHHHHHHHHHHHC
Confidence 47999999999999999999999987 9999988111 11111 11222211 111123455677889
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCc-EEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHH-----H
Q 013952 85 GIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA-----I 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----~ 157 (433)
|+++..++.+ ++.++..+-. ...||+||||||+. |+.++ +||.+..++++..++.....+... .
T Consensus 494 Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~ 564 (1006)
T PRK12775 494 GVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPFL 564 (1006)
T ss_pred CCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCccccccc
Confidence 9999988533 2222222211 24699999999994 77666 788777888876655443322100 0
Q ss_pred --HhcCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952 158 --KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234 (433)
Q Consensus 158 --~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~ 234 (433)
....+++|+|||+|++|+++|..+.+.|.+ |+++.+....- .+... .-.+.+++.||++++++.+.++..++
T Consensus 565 ~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 565 DTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred cCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeCC
Confidence 012579999999999999999999999974 78887654321 11111 11245678899999999999997655
Q ss_pred CCcEEEEEeC-----------------CC--cEEECCEEEEcccCccChhhhhc--cccc-CCCcEEeCC-----CCCCC
Q 013952 235 DGEVKEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKTS 287 (433)
Q Consensus 235 ~g~~~~v~~~-----------------~g--~~i~~d~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t~ 287 (433)
+|++.++++. .| .++++|.||+|+|+.|+..++.. ++.+ .+|.|.+|+ +++|+
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts 719 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN 719 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence 7777666542 12 26999999999999999876643 4555 567899996 78999
Q ss_pred CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952 288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334 (433)
Q Consensus 288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 334 (433)
.|+|||+|||+..+ .++..|+.+|+.||.+|...+.+
T Consensus 720 ~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 720 LPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998765 46788999999999999776543
No 64
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=2e-30 Score=265.24 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=187.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||||||+||.+|++.|++ |+|+|+...+. +.+.. .+|.+.. .........+++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lG-------G~l~~----~IP~~rl--p~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPG-------GVVKN----IIPEFRI--SAESIQKDIELVKFH 600 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccC-------ceeee----cccccCC--CHHHHHHHHHHHHhc
Confidence 47999999999999999999999987 99999982221 11110 1122111 001112234566778
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH-HhcCCC
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKNG 163 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-~~~~~~ 163 (433)
|++++.+... .+.+.+.+...||+|+||||+.+..+. +++|.. .+++. .......+.... ....++
T Consensus 601 GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK 667 (1012)
T TIGR03315 601 GVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLGK 667 (1012)
T ss_pred CcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccCC
Confidence 9999887321 122233344679999999999753332 256543 34442 222222221110 012589
Q ss_pred cEEEECCCHHHHHHHHHHHhC-CC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe--------
Q 013952 164 KAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT-------- 232 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~-g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-------- 232 (433)
+|+|||+|.+|+|+|..+.+. |. +|+++.+.+. .++. .+.+ +.+. .+.||+++++..+.++..
T Consensus 668 ~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~a-leeGVe~~~~~~p~~I~~g~l~v~~~ 741 (1012)
T TIGR03315 668 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEEA-LEDGVDFKELLSPESFEDGTLTCEVM 741 (1012)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHHH-HHcCCEEEeCCceEEEECCeEEEEEE
Confidence 999999999999999998876 74 8999988763 3332 2333 3333 357999999988887751
Q ss_pred -----cCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCCC-CCCCCCCeEEcCccccccccc
Q 013952 233 -----NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKL 304 (433)
Q Consensus 233 -----~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~vfa~Gd~~~~~~~~ 304 (433)
+.+|+...+...+..++++|.||+|+|.+|+..+++. ++.. .+|++.||++ ++|+.|+|||+|||+..+
T Consensus 742 ~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP--- 818 (1012)
T TIGR03315 742 KLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP--- 818 (1012)
T ss_pred EeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc---
Confidence 0111111111112236999999999999999988753 4665 5688999986 999999999999998765
Q ss_pred cCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 305 YREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 305 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
..+..|+.+|+.||.+|++..
T Consensus 819 -------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 819 -------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred -------cHHHHHHHHHHHHHHHHhccc
Confidence 467889999999999998654
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=1e-29 Score=247.30 Aligned_cols=285 Identities=21% Similarity=0.274 Sum_probs=197.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+||||||+|+++|..|++.|++ |+++|+... + ++++. ..+|.+.. .........+++++.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~------~-gG~l~----~gip~~~~--~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPE------I-GGLLT----FGIPSFKL--DKAVLSRRREIFTAM 204 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCC------C-Cceee----ecCccccC--CHHHHHHHHHHHHHC
Confidence 47999999999999999999999987 999998811 1 11211 11222111 001112345667889
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc-cCCCCCCCCCCCCEEEecCHHHH--HHHHHH-----
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA----- 156 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~----- 156 (433)
|++++.++.+.. .+.+.+ ....||.|++|||+.+.. ++ ++|.+.+++++..++... ..+...
T Consensus 205 Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~ 274 (467)
T TIGR01318 205 GIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESPE 274 (467)
T ss_pred CCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCcccc
Confidence 999998876521 122222 134799999999998743 34 788887888865432211 111000
Q ss_pred --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
+....+++++|+|+|.+|+++|..+.+.|. +|+++.+.+.. ++. .+.+ .+.+++.||++++++.+.++..
T Consensus 275 ~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~~ 348 (467)
T TIGR01318 275 EPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIEC 348 (467)
T ss_pred ccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEEE
Confidence 001246899999999999999999999995 79999987653 332 2222 2346788999999999999976
Q ss_pred cCCCcEEEEEeC---------C-----------CcEEECCEEEEcccCccChh-hh-hccccc-CCCcEEeC----CCCC
Q 013952 233 NADGEVKEVKLK---------D-----------GRTLEADIVVVGVGGRPLIS-LF-KGQVAE-NKGGIETD----DFFK 285 (433)
Q Consensus 233 ~~~g~~~~v~~~---------~-----------g~~i~~d~vi~a~G~~p~~~-~~-~~~~~~-~~g~i~vd----~~~~ 285 (433)
++++++..+++. + ..++++|.||+|+|++|+.. ++ ..++.. ++|++.+| ++++
T Consensus 349 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~ 428 (467)
T TIGR01318 349 DEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQ 428 (467)
T ss_pred CCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCcc
Confidence 455666555441 1 13699999999999999853 33 334555 56889999 6799
Q ss_pred CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
|+.|+|||+|||+..+ ..+..|+.+|+.||.+|...
T Consensus 429 T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 429 TTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred CCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 45678999999999998754
No 66
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=2.6e-30 Score=232.18 Aligned_cols=295 Identities=21% Similarity=0.355 Sum_probs=214.4
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
++++|||+|+|.+|.+.+..|-..-++ |++|++. +..|. |.++.... ..+ ..+ ...+.......
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~v-----GTv-e~r-----SIvEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTV-----GTV-ELR-----SIVEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCccc-----cce-eeh-----hhhhhHHHHhh
Confidence 357999999999999999888776665 9999999 44332 22211000 000 000 00111222222
Q ss_pred hC--CcEEEeCceEEEEECCCCEEEe----CCC----cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHH
Q 013952 83 EK--GIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 152 (433)
Q Consensus 83 ~~--~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 152 (433)
.. ++.++.. +.+.||++.+.|.. +++ ..+.||+||+|+|+.+..+. +||.. ++.+.++...++++
T Consensus 119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg---ipGV~-e~~~FLKEv~dAqe 193 (491)
T KOG2495|consen 119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG---IPGVE-ENAHFLKEVEDAQE 193 (491)
T ss_pred ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC---CCchh-hchhhhhhhhHHHH
Confidence 22 5677774 78899999998765 333 36899999999999988776 67754 55666788889988
Q ss_pred HHHHHHhc---------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCccCCCCCC
Q 013952 153 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT 203 (433)
Q Consensus 153 ~~~~~~~~---------------~~~~v~ViG~G~~g~e~a~~l~~~--------------g~~V~li~~~~~~~~~~~~ 203 (433)
++..+-.+ +-.+++|||||++|+|+|.+|+.. -.+||+++..+.+++. |+
T Consensus 194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd 272 (491)
T KOG2495|consen 194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD 272 (491)
T ss_pred HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence 86655321 224789999999999999998753 3589999999999885 89
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhh--ccccc-CCCcE
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI 278 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i 278 (433)
..+.+..++.+.+.||++..++.|..+.. +...+...+| +++++-+++|+||..|....-. ..+.- .+.++
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L 348 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL 348 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence 99999999999999999999999998864 2244555555 5799999999999877654322 22221 24489
Q ss_pred EeCCCCCC-CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhc
Q 013952 279 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 279 ~vd~~~~t-~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 330 (433)
.||++||. +.+||||+|||+..+.. .++++.|.+||.++|+++-.
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHHH
Confidence 99999998 89999999999943322 15888999999999998753
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=5.2e-30 Score=258.53 Aligned_cols=287 Identities=19% Similarity=0.266 Sum_probs=194.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||+||+++|..|++.|++ |+|+|++..+ ++.+.. .+|.+.. .........+.+.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~-------GG~l~~----gip~~~~--~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQA-------GGMMRY----GIPRFRL--PESVIDADIAPLRAM 256 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC-------Cceeee----cCCCCCC--CHHHHHHHHHHHHHc
Confidence 47999999999999999999999987 9999988111 111110 1121110 000112234556778
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 163 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (433)
|+++..++.+ .++ +.+.+. ...||+|++|||+.+. .++ +||.+..+++...++... ....-....++
T Consensus 257 Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~--~~~~~~~~~gk 324 (652)
T PRK12814 257 GAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRN--VALGTALHPGK 324 (652)
T ss_pred CCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHH--hhcCCcccCCC
Confidence 9999887543 211 222221 2359999999999753 444 677776777653222111 10000112579
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE--E
Q 013952 164 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV--K 239 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~-~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~--~ 239 (433)
+++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+ +.+. .+.||++++++.+.++... ++.+ .
T Consensus 325 ~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~ 397 (652)
T PRK12814 325 KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEEA-LAEGVSLRELAAPVSIERS-EGGLELT 397 (652)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHHH-HHcCCcEEeccCcEEEEec-CCeEEEE
Confidence 99999999999999999999986 6999988764 3442 2223 2232 4579999999999998762 3322 1
Q ss_pred EEEeC---------------CC--cEEECCEEEEcccCccChhhhhc-cccc-CCCcEEeCC-CCCCCCCCeEEcCcccc
Q 013952 240 EVKLK---------------DG--RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVAT 299 (433)
Q Consensus 240 ~v~~~---------------~g--~~i~~d~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~vfa~Gd~~~ 299 (433)
.+.+. +| ..+++|.||+|+|+.|+..++.. ++.. .+|++.||+ +++|+.|+|||+||++.
T Consensus 398 ~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~ 477 (652)
T PRK12814 398 AIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVT 477 (652)
T ss_pred EEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCC
Confidence 12111 12 25999999999999999987743 4665 468899997 58999999999999987
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhccCCCCC
Q 013952 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 336 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 336 (433)
.+ .++..|+.+|+.||.+|...+.++.
T Consensus 478 g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 478 GA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred Cc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55 4678899999999999988776543
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=3.3e-29 Score=253.93 Aligned_cols=286 Identities=19% Similarity=0.262 Sum_probs=196.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||||||+||..|++.|++ |+|+|+... + ++++.. .+|.+.. .........+++++.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~------~-GG~l~~----gip~~~l--~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPE------I-GGLLTF----GIPAFKL--DKSLLARRREIFSAM 390 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC------C-Cceeee----cCCCccC--CHHHHHHHHHHHHHC
Confidence 57999999999999999999999987 999998711 1 111111 1222111 001112234567778
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHH--HHHHHHH---H--
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREID--DADKLVE---A-- 156 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---~-- 156 (433)
|+++..++.+. ..+...+ ....||+|++|||+... .++ +++.+..+++...++. ....+.. .
T Consensus 391 Gv~~~~~~~v~------~~i~~~~-~~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~ 460 (654)
T PRK12769 391 GIEFELNCEVG------KDISLES-LLEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEELPE 460 (654)
T ss_pred CeEEECCCEeC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCccccc
Confidence 99999886552 1111111 12479999999998643 334 6777777877542211 0001000 0
Q ss_pred --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.....+++++|||+|.+|+++|..+.+.|. +|+++.+.+.. ++. .+. ..+.+++.||++++++.+.++..
T Consensus 461 ~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~~----e~~~~~~~Gv~~~~~~~~~~i~~ 534 (654)
T PRK12769 461 EPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG--SKK----EVKNAREEGANFEFNVQPVALEL 534 (654)
T ss_pred cccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC--CHH----HHHHHHHcCCeEEeccCcEEEEE
Confidence 001246899999999999999999989986 79999876553 332 222 23457889999999999999976
Q ss_pred cCCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-CCCcEEeCC----CCC
Q 013952 233 NADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----FFK 285 (433)
Q Consensus 233 ~~~g~~~~v~~~---------~g-----------~~i~~d~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~~~ 285 (433)
++++++..|++. +| .++++|.||+|+|+.|+. .++. .++.+ .+|.|.+|+ +++
T Consensus 535 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~ 614 (654)
T PRK12769 535 NEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQ 614 (654)
T ss_pred CCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcc
Confidence 456777666541 12 259999999999999985 3443 35666 568899986 489
Q ss_pred CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
|+.|+|||+||++..+ .++..|+.+|+.||.+|...+
T Consensus 615 Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 615 TSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred cCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998765 457889999999999998654
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=3.9e-29 Score=252.06 Aligned_cols=283 Identities=22% Similarity=0.267 Sum_probs=192.7
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
+.++|+|||+|++|+++|..|++.|++ |+|+|+...+. +++. ..++.+.. .........+++++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~g-------G~~~----~~i~~~~~--~~~~~~~~~~~~~~ 345 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPG-------GVMR----YGIPSYRL--PDEALDKDIAFIEA 345 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC-------ceEe----ecCCcccC--CHHHHHHHHHHHHH
Confidence 357899999999999999999999987 99999882111 1110 01111100 00001223456778
Q ss_pred CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh---
Q 013952 84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 159 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~--- 159 (433)
.|++++.++.+.. + +...+ ....||+||+|||+. ++.++ ++|.+..+++.. ......+...+..
T Consensus 346 ~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~~ 413 (604)
T PRK13984 346 LGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEGP 413 (604)
T ss_pred CCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence 8999999866631 1 11111 235799999999987 45555 678776777753 3333333333211
Q ss_pred --cCCCcEEEECCCHHHHHHHHHHHhCCC------eEEEEccC--CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952 160 --KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG 229 (433)
Q Consensus 160 --~~~~~v~ViG~G~~g~e~a~~l~~~g~------~V~li~~~--~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~ 229 (433)
..+++++|||+|.+|+|+|..+.+.+. +|+++... ...++. ...+ +.+ +.+.||++++++.+.+
T Consensus 414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~-~~~e----~~~-~~~~GV~i~~~~~~~~ 487 (604)
T PRK13984 414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA-DMEE----IEE-GLEEGVVIYPGWGPME 487 (604)
T ss_pred cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC-CHHH----HHH-HHHcCCEEEeCCCCEE
Confidence 136899999999999999999998753 67876432 112221 1112 223 3467999999998888
Q ss_pred EEecCCCcEEEEEeC-------------------CCcEEECCEEEEcccCccChhhhhc----ccccCCCcEEeCCCCCC
Q 013952 230 FTTNADGEVKEVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKT 286 (433)
Q Consensus 230 i~~~~~g~~~~v~~~-------------------~g~~i~~d~vi~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t 286 (433)
+.. +++++..+++. ++.++++|.||+|+|++|++.++.. .+..++|+|.||+++||
T Consensus 488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T 566 (604)
T PRK13984 488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT 566 (604)
T ss_pred EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence 865 45666555442 1246999999999999999887753 24446788999999999
Q ss_pred CCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 287 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 287 ~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
++|+|||+|||+..+ .+..|+.+|+.||.+|...+
T Consensus 567 s~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 567 SIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999764 24678999999999997654
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=3.6e-29 Score=244.41 Aligned_cols=293 Identities=23% Similarity=0.276 Sum_probs=195.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
++|+|||||++|+++|.+|++.|++ |+|+|+...+. +++. ..+|.+.. .........+++++.|
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~g-------G~l~----~gip~~~~--~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCG-------GLLM----YGIPNMKL--DKAIVDRRIDLLSAEG 207 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCC-------ceee----ccCCCccC--CHHHHHHHHHHHHhCC
Confidence 7999999999999999999999987 99999882111 1110 01111110 0001123346677889
Q ss_pred cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHH-HHHHHHH--HH----
Q 013952 86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREID-DADKLVE--AI---- 157 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~--~~---- 157 (433)
++++.++.+. .+. .. +.....||+|++|||+. |+.++ ++|.+.+++++..++. +...... ..
T Consensus 208 v~~~~~~~v~-~~~-----~~-~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~ 277 (485)
T TIGR01317 208 IDFVTNTEIG-VDI-----SA-DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKDII 277 (485)
T ss_pred CEEECCCEeC-Ccc-----CH-HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccccc
Confidence 9999987653 111 11 11235799999999997 67666 6887777888653322 1111100 00
Q ss_pred -HhcCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCCCC--------CH--HHHHHHHHHHHhcCcEE-EcC
Q 013952 158 -KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF--------TA--DIAAFYEGYYANKGIKI-IKG 224 (433)
Q Consensus 158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~~~--------~~--~~~~~l~~~l~~~GV~v-~~~ 224 (433)
....+++|+|||+|++|+|+|..+.+.| .+|++++..+..+.... +. +.....++..+..||.+ +++
T Consensus 278 ~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~ 357 (485)
T TIGR01317 278 FIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYS 357 (485)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEe
Confidence 0125789999999999999988777776 57999987765432111 01 12223444445567754 567
Q ss_pred CeEEEEEecCCCcEEEEEe--------CCC-----------cEEECCEEEEcccCc-cChhhhhc-cccc-CCCcEEe-C
Q 013952 225 TVAVGFTTNADGEVKEVKL--------KDG-----------RTLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIET-D 281 (433)
Q Consensus 225 ~~v~~i~~~~~g~~~~v~~--------~~g-----------~~i~~d~vi~a~G~~-p~~~~~~~-~~~~-~~g~i~v-d 281 (433)
+.+.+|..++++++.++++ .+| .++++|.||+|+|+. |+..++.. ++.. .+|.+.+ |
T Consensus 358 ~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~ 437 (485)
T TIGR01317 358 ILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGY 437 (485)
T ss_pred cCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecC
Confidence 7888887644466666653 123 269999999999986 88877653 4655 4677754 5
Q ss_pred CCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCCC
Q 013952 282 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 334 (433)
Q Consensus 282 ~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 334 (433)
++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 438 ~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 438 DDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999998754 45677999999999999876654
No 71
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-30 Score=224.93 Aligned_cols=290 Identities=21% Similarity=0.280 Sum_probs=211.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.|||+||||||||-+||.+.+|+|.+.+ ++-.. +.+..+..-...++.+.+...|+.....+.+..+++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG---l~aer--------fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y 279 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTG---LVAER--------FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY 279 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhh---hhhhh--------hCCeeccccchhheeccccccchHHHHHHHHHHhhc
Confidence 5999999999999999999999998732 22111 111122222223333333333444455667777888
Q ss_pred CcEEEeCceEEEEECC-----CCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952 85 GIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 159 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~ 159 (433)
.+++....+...+.+. -..|++++|-.+.++.+|+|||++++..+.||-.....++|.++..++....
T Consensus 280 ~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF------- 352 (520)
T COG3634 280 DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF------- 352 (520)
T ss_pred CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc-------
Confidence 9988877777777663 2368899999999999999999999888743333344678888877766543
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcE
Q 013952 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEV 238 (433)
Q Consensus 160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~ 238 (433)
++|+|+|||||.+|+|.|..|+-.-..||+++-.+.+.. | +.+++.++ -.+|+++.+..-++|.. +..++
T Consensus 353 -~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D----~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~kV 423 (520)
T COG3634 353 -KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D----AVLQDKLRSLPNVTIITNAQTTEVKG-DGDKV 423 (520)
T ss_pred -CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H----HHHHHHHhcCCCcEEEecceeeEEec-CCcee
Confidence 799999999999999999999988788999875444322 2 23444444 36899999999999987 33456
Q ss_pred EEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccccc
Q 013952 239 KEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVE 312 (433)
Q Consensus 239 ~~v~~~~---g--~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~ 312 (433)
.++...+ | ..++-+-|++-+|..||+++++..+++ ..|-|.||.+..||.|+|||+|||+..+. +
T Consensus 424 ~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y---------K 494 (520)
T COG3634 424 TGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY---------K 494 (520)
T ss_pred cceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc---------c
Confidence 6665543 3 346778899999999999999988888 67889999999999999999999998876 3
Q ss_pred cHHHHHHHHHHHHHHHhc
Q 013952 313 HVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 313 ~~~~A~~~g~~aa~~i~~ 330 (433)
++..|+.+|..|+.+.+.
T Consensus 495 QIIIamG~GA~AaL~AFD 512 (520)
T COG3634 495 QIIIAMGEGAKASLSAFD 512 (520)
T ss_pred eEEEEecCcchhhhhhhh
Confidence 444455556555555443
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2.5e-28 Score=246.37 Aligned_cols=287 Identities=21% Similarity=0.273 Sum_probs=196.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||||++||++|..|++.|++ |+++|+... + ++++. ..+|.+... ........+++++.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~------~-GG~l~----~gip~~~l~--~~~~~~~~~~~~~~ 373 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPE------I-GGMLT----FGIPPFKLD--KTVLSQRREIFTAM 373 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCC------C-CCeee----ccCCcccCC--HHHHHHHHHHHHHC
Confidence 58999999999999999999999987 999998821 1 11211 112222110 01112234667789
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCcc-ccCCCCCCCCCCCCEEEecCHHHHH--HHHHH-----
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDAD--KLVEA----- 156 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~----- 156 (433)
|+++..++.+. +.+.+.+ ....||++++|||+.+. .++ +++.+..++++..++.... .+...
T Consensus 374 Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~ 443 (639)
T PRK12809 374 GIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPESEE 443 (639)
T ss_pred CeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCccccc
Confidence 99999886552 1122222 23579999999998653 333 6777777777632221110 00000
Q ss_pred --HHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 157 --IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 157 --~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
+....+++++|+|+|.++++.|..+.+.|. +|+++.+.+.. ++. .+.++ ..+++.||++++++.+.+|..
T Consensus 444 ~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~ 517 (639)
T PRK12809 444 YPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIAC 517 (639)
T ss_pred cccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEE
Confidence 011247899999999999999999888884 89999887554 332 22222 235788999999999999986
Q ss_pred cCCCcEEEEEe---C------CC-----------cEEECCEEEEcccCccChh-hhh-ccccc-CCCcEEeCC----CCC
Q 013952 233 NADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDD----FFK 285 (433)
Q Consensus 233 ~~~g~~~~v~~---~------~g-----------~~i~~d~vi~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~----~~~ 285 (433)
+++|++..+++ . +| .++++|.||+|+|++|+.. ++. .++.. .+|.|.+|+ +++
T Consensus 518 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~ 597 (639)
T PRK12809 518 DEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQ 597 (639)
T ss_pred CCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcc
Confidence 55666665533 1 12 3699999999999999753 443 34655 467888986 489
Q ss_pred CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccCC
Q 013952 286 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 333 (433)
Q Consensus 286 t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 333 (433)
|+.|+|||+||++..+ .++..|+.+|+.||.+|...+.
T Consensus 598 Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998765 4578899999999999987653
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=1.7e-27 Score=250.35 Aligned_cols=281 Identities=15% Similarity=0.134 Sum_probs=194.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+||+|||||||||+||.+|++.|++ |+|+|++..+ .+.+.... ..+++... ........+.+...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~------GG~~~~~~--~~~~g~~~---~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEA------GGSLLSEA--ETIDGKPA---ADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCC------CCeeeccc--cccCCccH---HHHHHHHHHHHhcC
Confidence 57999999999999999999999988 9999998111 11111110 11111100 00011223334434
Q ss_pred -CcEEEeCceEEEEECCCCEEEe---C-------C----C--cEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCH
Q 013952 85 -GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREI 147 (433)
Q Consensus 85 -~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~ 147 (433)
++++..++.|..+......... . + + .++.|++||||||+.++.++ ++|.+.+++++....
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~~~ 305 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAGAA 305 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEchHH
Confidence 5999998888887653321111 0 0 1 26899999999999998777 688888888876543
Q ss_pred HHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952 148 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 226 (433)
Q Consensus 148 ~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~ 226 (433)
.... ......++++++|+|+|++++|+|..|.+.|. .|++++..+.+ ...+.+.+++.||++++++.
T Consensus 306 ~~~l---~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 306 RTYL---NRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHV 373 (985)
T ss_pred HHHH---HhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCe
Confidence 3221 11111257899999999999999999999995 57888765432 23456778999999999999
Q ss_pred EEEEEecCCCcEEEEEeC----CCcEEECCEEEEcccCccChhhhhc-ccccCCCcEEeCCCC-----CCCCCCeEEcCc
Q 013952 227 AVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAVGD 296 (433)
Q Consensus 227 v~~i~~~~~g~~~~v~~~----~g~~i~~d~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~vfa~Gd 296 (433)
+.++.. ++.+..|++. ++++++||.|+++.|++||++++.. +.. +..|+.. .|+.|+||++||
T Consensus 374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaGD 446 (985)
T TIGR01372 374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAGA 446 (985)
T ss_pred EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEeec
Confidence 999976 4555555553 4568999999999999999998743 222 1222211 377999999999
Q ss_pred cccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 297 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
+++.. .+..|..+|+.||..|+...
T Consensus 447 ~~g~~-----------~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 447 ANGLF-----------GLAAALADGAAAGAAAARAA 471 (985)
T ss_pred cCCcc-----------CHHHHHHHHHHHHHHHHHHc
Confidence 98663 46778999999999886543
No 74
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-29 Score=203.37 Aligned_cols=294 Identities=23% Similarity=0.221 Sum_probs=208.6
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccc-cCCCCCCCCHh
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPE 79 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (433)
|...-+|+|||+|||+..||.++++..++ -+|+|-. ... ....+.+.......++|+|+.. .|.++.+...+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33345899999999999999999998877 4777655 111 1123334455567888998864 34445556667
Q ss_pred HHHhCCcEEEeCceEEEEECCCC-EEEeCCCcEEecceEEEccCCCccccCCCCCCCCC-----CCCEEEecCHHHHHHH
Q 013952 80 WYKEKGIELILSTEIVRADIASK-TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD-----AKNIFYLREIDDADKL 153 (433)
Q Consensus 80 ~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-----~~~v~~~~~~~~~~~~ 153 (433)
...++|.+++.. .|..++.+.+ ...+.+.+.+.+|.+|+|||+..+... +||.- ..++..+.-++.+.-
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~---~pg~ge~~fWqrGiSaCAVCDGaap- 153 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLH---LPGEGEGEFWQRGISACAVCDGAAP- 153 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeee---cCCCCcchHHhcccchhhcccCcch-
Confidence 777889999885 8888887765 333446678999999999999888776 34431 222322222222211
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952 154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 154 ~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 233 (433)
-++.|..+|||||.+++|-|.+|.+++.+|+++.|.+.+.. ...+ .++..+..+|++++++.+.+...+
T Consensus 154 -----ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~M---q~ra~~npnI~v~~nt~~~ea~gd 222 (322)
T KOG0404|consen 154 -----IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIM---QQRAEKNPNIEVLYNTVAVEALGD 222 (322)
T ss_pred -----hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHH---HHHHhcCCCeEEEechhhhhhccC
Confidence 12578999999999999999999999999999999887643 2222 234456778999999988887762
Q ss_pred CCCcE-----EEEEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeC-CCCCCCCCCeEEcCccccccccccC
Q 013952 234 ADGEV-----KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKLYR 306 (433)
Q Consensus 234 ~~g~~-----~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~vfa~Gd~~~~~~~~~~ 306 (433)
.+.+ ..+.+.+...++.+-++.++|..|++.+++..+++ .+|+|++- ..-.|++|++||+||+.....
T Consensus 223 -~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky---- 297 (322)
T KOG0404|consen 223 -GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY---- 297 (322)
T ss_pred -cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHH----
Confidence 2222 23333334579999999999999999999988888 68999887 457889999999999987543
Q ss_pred cccccccHHHHHHHHHHHHHH
Q 013952 307 EMRRVEHVDHARKSAEQAVKT 327 (433)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~ 327 (433)
.++..|...|.++|..
T Consensus 298 -----RQAvTaAgsGciaald 313 (322)
T KOG0404|consen 298 -----RQAVTAAGSGCIAALD 313 (322)
T ss_pred -----HHHHhhhccchhhhhh
Confidence 2334444555555544
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=2.3e-27 Score=227.96 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=192.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~--~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
.++|+||||||||++||..|++ .|++ |+|+|+...++. ++...-....+... .....+..++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~pgG-------lvr~gvaP~~~~~k-----~v~~~~~~~~~ 90 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTPFG-------LVRSGVAPDHPETK-----NVTNQFSRVAT 90 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCCcc-------eEeeccCCCcchhH-----HHHHHHHHHHH
Confidence 4689999999999999999987 4665 999999933332 22211101111000 00123345566
Q ss_pred hCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCc-cccCCCCCCCCCCCCEEEecCHHHHHHHH-H--HHH
Q 013952 83 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDADKLV-E--AIK 158 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~--~~~ 158 (433)
..+++++.+..+ ++.+.+++-. ..||+||+|||+.+ +.++ +||.+.++++...++.....-. . .+.
T Consensus 91 ~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~~ 160 (491)
T PLN02852 91 DDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHLP 160 (491)
T ss_pred HCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence 678888876443 2334443332 47999999999985 4455 7888888899766542211100 0 011
Q ss_pred --hcCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCCCCCHHH---------
Q 013952 159 --AKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTADI--------- 206 (433)
Q Consensus 159 --~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~~V~li~~~~~~~~~~~~~~~--------- 206 (433)
...+++++|||+|++|+++|..|.+. + .+|+++.|....-..+-..++
T Consensus 161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~ 240 (491)
T PLN02852 161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV 240 (491)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence 11478999999999999999998775 5 469999887642211111111
Q ss_pred ----------------------------HHHHHHHHHh---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC---
Q 013952 207 ----------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVKEVKLK--- 244 (433)
Q Consensus 207 ----------------------------~~~l~~~l~~---------~GV~v~~~~~v~~i~~~--~~g~~~~v~~~--- 244 (433)
.+.+.+...+ ++|.|++...+.+|... +++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~ 320 (491)
T PLN02852 241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTV 320 (491)
T ss_pred ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEee
Confidence 1122222222 57999999999999742 23567666653
Q ss_pred --------------CC--cEEECCEEEEcccCc--cChhh-hhc--cccc-CCCcEEeCCCCCCCCCCeEEcCccccccc
Q 013952 245 --------------DG--RTLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPM 302 (433)
Q Consensus 245 --------------~g--~~i~~d~vi~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~ 302 (433)
+| +.++||.||.++|++ |...+ +.. ++.. .+|+|.+|+.++|+.|+|||+|||..++.
T Consensus 321 l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~ 400 (491)
T PLN02852 321 LEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT 400 (491)
T ss_pred cCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC
Confidence 12 259999999999997 55543 221 2333 57899999888999999999999998765
Q ss_pred cccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 303 KLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 303 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
..+..++.+|+.++.+|....
T Consensus 401 ---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 401 ---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred ---------CeeeecHhhHHHHHHHHHHHH
Confidence 356667788888898888654
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=1.7e-26 Score=230.74 Aligned_cols=287 Identities=21% Similarity=0.296 Sum_probs=191.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.++|+|||+||+||++|..|++.|++ |+++|+.... . +++. ..++.+... ........+.+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~------G-G~l~----~gip~~~~~--~~~~~~~l~~~~~~ 200 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKL------G-GMMR----YGIPAYRLP--REVLDAEIQRILDL 200 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCC------C-Ceee----ecCCCccCC--HHHHHHHHHHHHHC
Confidence 46899999999999999999999986 9999988111 1 1111 112222110 00011223456678
Q ss_pred CcEEEeCceE-EEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCC
Q 013952 85 GIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 163 (433)
Q Consensus 85 ~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (433)
|+++..+..+ ..+..+. ....||++++|||+.+..+. .+++.+..+++..-.+.. ..........++
T Consensus 201 Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~--~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk 268 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRL--PIPGEDAAGVLDAVDFLR--AVGEGEPPFLGK 268 (564)
T ss_pred CCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcC--CCCCCccCCcEEHHHHHH--HhhccCCcCCCC
Confidence 9998887554 2211110 12358999999998753222 156665555554322211 111000122478
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE---
Q 013952 164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV--- 238 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~--- 238 (433)
+++|+|+|.++++.+..+.+.+ .+|+++.+.+.. ++. .... + +.+.+.||++++++.+.++..++++.+
T Consensus 269 ~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~ 342 (564)
T PRK12771 269 RVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE----I-EEALREGVEINWLRTPVEIEGDENGATGLR 342 (564)
T ss_pred CEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEEEEE
Confidence 9999999999999999998888 678988876542 221 2222 2 234568999999999999976334432
Q ss_pred -EEEEe----CCC---------cEEECCEEEEcccCccChhhhhc--ccccCCCcEEeCC-CCCCCCCCeEEcCcccccc
Q 013952 239 -KEVKL----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVATFP 301 (433)
Q Consensus 239 -~~v~~----~~g---------~~i~~d~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~vfa~Gd~~~~~ 301 (433)
..+.. .+| .++++|.||+|+|+.|+..++.. ++..++|+|.+|+ +++|+.|+|||+|||+..+
T Consensus 343 ~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~ 422 (564)
T PRK12771 343 VITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP 422 (564)
T ss_pred EEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc
Confidence 11221 112 37999999999999999887763 4444678899998 7899999999999998754
Q ss_pred ccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 335 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 335 (433)
.++..|+.+|+.||.+|...+.+.
T Consensus 423 ----------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 423 ----------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 568889999999999997766543
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.94 E-value=7.6e-25 Score=211.50 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=181.4
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCCC-CCc---------------cccc--cCCCCC---
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYER-PAL---------------SKAY--LFPEGT--- 59 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~~-~~~---------------~~~~--~~~~~~--- 59 (433)
..++|+|||||++||+||++|++.|++ |+++|++ . ..|.. +.. +..+ +....+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 358999999999999999999999987 9999998 1 11211 000 0000 000000
Q ss_pred CCCCCcccc--------------cCCCCCCCCHhHHHhCCcE--EEeCceEEEEECCCCE--EEeCCC--c--EEecceE
Q 013952 60 ARLPGFHVC--------------VGSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG--L--IFKYQIL 117 (433)
Q Consensus 60 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~--~--~~~~d~l 117 (433)
..++.++.. ...+..+.+.++.+.+++. +.++++|..+++.++. |.+.++ . +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 001111110 0011122344455567877 7888999999876553 444322 2 4679999
Q ss_pred EEccC--CCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 118 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 118 vlAtG--~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
|+||| +.|+.|+++|+..+. ..+++..++.+...+ ++|+|+|||+|.+|+|+|..|...+.+|+++.+.+
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~~-------~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDPF-------KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCcccc-------CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999 678888743332222 234444444443332 68999999999999999999999999999999865
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCC
Q 013952 196 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 275 (433)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~ 275 (433)
.... . ..+......++.+..|..+.. ++ +|.+.||+.+++|.||+|||++++..++.. .
T Consensus 238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~ 296 (461)
T PLN02172 238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N 296 (461)
T ss_pred cccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence 3211 0 011122344556667776653 44 488999999999999999999999988753 2
Q ss_pred CcEEeCCCC------C---CC-CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 276 GGIETDDFF------K---TS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 276 g~i~vd~~~------~---t~-~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
+.+.+|+.. + .. .|++..+|=.... ..+..+-.|++.+|+-+.+..
T Consensus 297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 345454331 1 13 4899999954322 223445678888888776653
No 78
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.90 E-value=1.3e-22 Score=175.64 Aligned_cols=304 Identities=18% Similarity=0.230 Sum_probs=209.9
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---cccccCCCCCCCCCCcccccCCCCCCCCHhH
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPAL---SKAYLFPEGTARLPGFHVCVGSGGERLLPEW 80 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
++++|+|||||.+|++.|..+.+. +..++|.|+|+...+|.+|.. .+++..-.... ....-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr---------------r~~a~ 101 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR---------------RKQAS 101 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCcceEEeccchhhhhhcc---------------Ccccc
Confidence 468999999999999999888764 346779999999666666643 22221111100 01111
Q ss_pred HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCC-CCCCCCCEEEecCHHHHHHHHHHHHh
Q 013952 81 YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKA 159 (433)
Q Consensus 81 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~ 159 (433)
+-..+..++. ..|..+++++++|.+.+|+++.||++|||+|-+-..-.+.|+ +..+.++|.+..+....++..+.+..
T Consensus 102 liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~ 180 (446)
T KOG3851|consen 102 LIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMN 180 (446)
T ss_pred cccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHh
Confidence 1123444444 478889999999999999999999999999987654443332 33567788888888888888888876
Q ss_pred cCCCcEEE---------ECCCHHHHHHHH-HHHhCCC--eEEEE--ccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952 160 KKNGKAVV---------VGGGYIGLELSA-ALKINNI--DVSMV--YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 225 (433)
Q Consensus 160 ~~~~~v~V---------iG~G~~g~e~a~-~l~~~g~--~V~li--~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~ 225 (433)
++..+.+. -|+-.-.+-+++ .+.+.|. ++.++ +.-+.+.. -+..++++++..+++.|++....
T Consensus 181 fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~kr 257 (446)
T KOG3851|consen 181 FKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKR 257 (446)
T ss_pred ccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEeeecc
Confidence 65544433 244444555555 4556664 33443 33333322 36788999999999999999888
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCC-CCCC-CCCCeEEcCcccccc
Q 013952 226 VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFP 301 (433)
Q Consensus 226 ~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~vfa~Gd~~~~~ 301 (433)
...++..++...+.+..-+-| ++++++++-+....++...+.+..+....|++.||. .+|+ ..||||++|||...|
T Consensus 258 nLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~P 337 (446)
T KOG3851|consen 258 NLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLP 337 (446)
T ss_pred ceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCC
Confidence 888887632221111111224 478999999999888877777777777789999995 4776 899999999999999
Q ss_pred ccccCcccccccHHHHHHHHHHHHHHHhccCCCC
Q 013952 302 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 335 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 335 (433)
+. ++++.+..|..++-.|+..-.+|+
T Consensus 338 ns--------KTaAAvaaq~~vv~~nl~~~m~g~ 363 (446)
T KOG3851|consen 338 NS--------KTAAAVAAQSPVVDKNLTQVMQGK 363 (446)
T ss_pred ch--------hhHHHHHhcCchhhhhHHHHhcCC
Confidence 76 666666678888888887655554
No 79
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.88 E-value=2e-22 Score=169.78 Aligned_cols=268 Identities=22% Similarity=0.287 Sum_probs=174.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
+.+|||||.||.+||..|+..- +..+|+++..+ . ........-..++......+.. ...+...+..
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~eq~------~~elg~~f~~----- 68 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQN------CHELGPDFRR----- 68 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccc------hhhhcccHHH-----
Confidence 3689999999999999999975 45689999888 1 1111000011111111100000 0000111111
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCc
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 164 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
++. .|..++.+.+.+.+.+|..+.|++|+++||.+|...- .+ -.+.+...++.+.++.++..+. +.|.
T Consensus 69 ---~~~--~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--kaK~ 136 (334)
T KOG2755|consen 69 ---FLN--DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KAKI 136 (334)
T ss_pred ---HHH--hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hcce
Confidence 111 2555667788899999999999999999999986542 33 2366778888888888888887 5789
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcC------------cEEEcCCe------
Q 013952 165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGTV------ 226 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~G------------V~v~~~~~------ 226 (433)
|.|+|.|-+++|++..+. +.+|+|....+.+...++++.+...+...++..+ ++.+.+++
T Consensus 137 VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~ 214 (334)
T KOG2755|consen 137 VLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP 214 (334)
T ss_pred EEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence 999999999999998885 5789999888888888888877666555441110 10111100
Q ss_pred ------------------------------EEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-hccccc
Q 013952 227 ------------------------------AVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-KGQVAE 273 (433)
Q Consensus 227 ------------------------------v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~-~~~~~~ 273 (433)
+..........+.......+ ..+.||.+++|+|..||.+++ ...+..
T Consensus 215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~ 294 (334)
T KOG2755|consen 215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQI 294 (334)
T ss_pred ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhh
Confidence 00000000000000000111 368899999999999999955 334555
Q ss_pred -CCCcEEeCCCCCCCCCCeEEcCccccc
Q 013952 274 -NKGGIETDDFFKTSADDVYAVGDVATF 300 (433)
Q Consensus 274 -~~g~i~vd~~~~t~~~~vfa~Gd~~~~ 300 (433)
++|++.||+.|+|+.|++||+||++..
T Consensus 295 ~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 295 TEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccCeeehhhccccccceeeecceecc
Confidence 889999999999999999999998774
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=7.7e-22 Score=187.96 Aligned_cols=289 Identities=21% Similarity=0.251 Sum_probs=199.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
-++|.|||||||||+||..|++.|+. |+++|+. ...++++. ..+|.+.. ..+..+...+.+++.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~-------~~~GGll~----yGIP~~kl--~k~i~d~~i~~l~~~ 186 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERV-------ALDGGLLL----YGIPDFKL--PKDILDRRLELLERS 186 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCc-------CCCceeEE----ecCchhhc--cchHHHHHHHHHHHc
Confidence 37899999999999999999999998 9998888 11222221 11333322 112234456778889
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH-----
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----- 158 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~----- 158 (433)
|++|+.++++- +.++.+.- .-.||+++++||+. |+..+ ++|.+.++++...++.........-.
T Consensus 187 Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~ 256 (457)
T COG0493 187 GVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKEVLGDFAEDR 256 (457)
T ss_pred CeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHHHhccccccc
Confidence 99999986652 22322221 23569999999974 44444 78887778876544333222111110
Q ss_pred h--cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013952 159 A--KKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 234 (433)
Q Consensus 159 ~--~~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~ 234 (433)
. ..+++++|||+|.++++++....+.|. +|+.+.+...- -...++..-.....+...++|+...+.....++..++
T Consensus 257 ~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e 336 (457)
T COG0493 257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336 (457)
T ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence 0 123899999999999999999999997 67777532221 1111222334455667788899999999999998877
Q ss_pred CCcEEEEEeCC-------------------C--cEEECCEEEEcccCccChhhh---hccccc-CCCcEEeCCCC-CCCC
Q 013952 235 DGEVKEVKLKD-------------------G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KTSA 288 (433)
Q Consensus 235 ~g~~~~v~~~~-------------------g--~~i~~d~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t~~ 288 (433)
+|++..+.+.. | ..+++|.|+.|+|+.++.... ...+.. ..|.+.+|+.+ +|+.
T Consensus 337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~ 416 (457)
T COG0493 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI 416 (457)
T ss_pred CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence 88877654421 1 258899999999988875432 223444 67899999998 9999
Q ss_pred CCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHh
Q 013952 289 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 329 (433)
Q Consensus 289 ~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 329 (433)
|++||.||+..+. ..+..|+.+|+.+|+.|.
T Consensus 417 ~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 417 PGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 9999999999864 567889999999999886
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.86 E-value=7.9e-21 Score=185.99 Aligned_cols=298 Identities=16% Similarity=0.234 Sum_probs=154.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC---CCCCCCC---CccccccCC-------CCCCCCCCcccccCC-
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---VAPYERP---ALSKAYLFP-------EGTARLPGFHVCVGS- 71 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~---~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~- 71 (433)
++|+|||||++||++|+.|.+.|++ ++++|++ ...|... .....-.+. .....+++++.....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999987 9999999 2222100 000000000 001112222221110
Q ss_pred ------CCCCCCHhHHHhCCc--EEEeCceEEEEECCC-------CEEEeCC-C--cEEecceEEEccCC--CccccCCC
Q 013952 72 ------GGERLLPEWYKEKGI--ELILSTEIVRADIAS-------KTLLSAT-G--LIFKYQILVIATGS--TVLRLTDF 131 (433)
Q Consensus 72 ------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~-------~~v~~~~-~--~~~~~d~lvlAtG~--~~~~~~~~ 131 (433)
+..+.+..+.+++++ .+.++++|.++.+.. -.|++.+ + ++-.||+||+|||. .|..|. +
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence 112234445555665 477888999887532 2355543 3 24579999999995 576664 1
Q ss_pred CCCCCC--CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCCCC------
Q 013952 132 GVEGAD--AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------ 202 (433)
Q Consensus 132 ~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-~~~~~------ 202 (433)
.+||.+ ...++++.++.+...+ ++|+|+|||+|.+|+++|..++....+|++..|.+.+ +++..
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 134432 3467887777665443 7999999999999999999999999999988776432 12111
Q ss_pred ----------------CHHHHHHHH-H--------------------------------HHHhcCcEEEcCCeEEEEEec
Q 013952 203 ----------------TADIAAFYE-G--------------------------------YYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 203 ----------------~~~~~~~l~-~--------------------------------~l~~~GV~v~~~~~v~~i~~~ 233 (433)
+..+.+.+. + .+....|++. ..|.++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~- 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE- 307 (531)
T ss_dssp --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence 111111110 0 1111122222 12333332
Q ss_pred CCCcEEEEEeCCCcEE-ECCEEEEcccCccChhhhhccccc-CCCcEEeCCCC---CCCCCCeEEcCccccccccccCcc
Q 013952 234 ADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM 308 (433)
Q Consensus 234 ~~g~~~~v~~~~g~~i-~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~vfa~Gd~~~~~~~~~~~~ 308 (433)
.+|.+.||..+ ++|.||+|||++....+++..+.. .++.+..-.++ ....|++..+|=+....
T Consensus 308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 35778999765 699999999999988888655332 33322222222 12458899999653211
Q ss_pred cccccHHHHHHHHHHHHHHHhccC
Q 013952 309 RRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 309 ~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
.....+..|++.+|+-+.+..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 234556789999888776653
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.85 E-value=6.4e-20 Score=185.07 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=162.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCC--CCCccccccCCCCCCCC---CCcccccCCCCCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYE--RPALSKAYLFPEGTARL---PGFHVCVGSGGERL 76 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (433)
.++|+||||||||++||++|++.|++ |+++|+. . .++. ++......+.+.-.... ++-....+.. ...
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R~ 458 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VRW 458 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-ccc
Confidence 57999999999999999999999998 9999986 2 1111 00000000000000000 0000000000 111
Q ss_pred CH------hHHHhC--CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCC-CccccCCCCCCCCCCCCEEEecCH
Q 013952 77 LP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREI 147 (433)
Q Consensus 77 ~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~ 147 (433)
.. ..+.+. ++.++.+..+ +..++.++-....||+|+||||+ .|+.++ +||.+..++++..++
T Consensus 459 ~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV~sA~Df 529 (1028)
T PRK06567 459 DKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGVKTASDF 529 (1028)
T ss_pred hHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCeEEHHHH
Confidence 11 112223 3555555331 22233322234679999999999 688777 688777888875553
Q ss_pred HHHHHHHHHH-----Hh-cCCCcEEEECCCHHHHHHHHHHHh--------------------------------------
Q 013952 148 DDADKLVEAI-----KA-KKNGKAVVVGGGYIGLELSAALKI-------------------------------------- 183 (433)
Q Consensus 148 ~~~~~~~~~~-----~~-~~~~~v~ViG~G~~g~e~a~~l~~-------------------------------------- 183 (433)
.......... .. ..+++|+|||||.+|+|+|.....
T Consensus 530 L~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~ 609 (1028)
T PRK06567 530 LMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKE 609 (1028)
T ss_pred HHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 2221111010 00 025799999999999999983322
Q ss_pred -------------CCCeEEEEccCCcc-CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----
Q 013952 184 -------------NNIDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK----- 244 (433)
Q Consensus 184 -------------~g~~V~li~~~~~~-~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~----- 244 (433)
.|. |+++.|...- +|. . .-..+.+. ...+.||+++++..+.++..+++|++.++++.
T Consensus 610 ~~~~~~v~~l~~~~G~-VtIvYRr~~~empA-~-~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~ 685 (1028)
T PRK06567 610 AKNNEELRKVFNKLGG-ATVYYRGRLQDSPA-Y-KLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRH 685 (1028)
T ss_pred hhccchhhhhhccCCc-eEEEecCChhhCCC-C-CCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence 122 7777765432 121 0 00012222 34667999999999999987556777766552
Q ss_pred ---------C----------------CcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCcccc
Q 013952 245 ---------D----------------GRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 299 (433)
Q Consensus 245 ---------~----------------g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~ 299 (433)
+ ..+++||.||+|+|..||+.+.. .+..+-++.+++|+
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-----------~~~s~~~d~~~~f~------ 748 (1028)
T PRK06567 686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-----------DKYSYFGDCNPKYS------ 748 (1028)
T ss_pred cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----------cccccccCCCCccc------
Confidence 1 14699999999999999987631 01112223344443
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 300 FPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.++..|+.+|+.++.+|...
T Consensus 749 ------------Gtvv~A~as~k~~~~~i~~~ 768 (1028)
T PRK06567 749 ------------GSVVKALASSKEGYDAINKK 768 (1028)
T ss_pred ------------cHHHHHHHHHHhHHHHHHHH
Confidence 35777899999999998543
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.82 E-value=1.4e-21 Score=170.09 Aligned_cols=185 Identities=34% Similarity=0.475 Sum_probs=122.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCC--CCHhHHHh
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER--LLPEWYKE 83 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 83 (433)
||+|||||+||++||.+|++.+.+ ++++++. ..++....+....+....... .. .. . .. ...+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-~-~~~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHR----HE-FL-P-ARLFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHH----HH-HH-H-HHHGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccc----cc-cc-c-cccccccccccc
Confidence 799999999999999999988877 9999887 322222222111110000000 00 00 0 00 22333467
Q ss_pred CCcEEEeCceEEEEECCCCEE----------EeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHH
Q 013952 84 KGIELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 153 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 153 (433)
.++++..+..+.+++...+.+ ...++.++.||+||+|||+.|..|+ +||.+ ..+......++..+
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~ 145 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRF 145 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHH
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--cccccccccccccc
Confidence 899998888999999888742 2234568999999999999988886 56652 22333455566666
Q ss_pred HHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952 154 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 154 ~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 233 (433)
...+.. +++++|||
T Consensus 146 ~~~~~~--~~~v~VvG---------------------------------------------------------------- 159 (201)
T PF07992_consen 146 LELLES--PKRVAVVG---------------------------------------------------------------- 159 (201)
T ss_dssp HTHSST--TSEEEEES----------------------------------------------------------------
T ss_pred cccccc--cccccccc----------------------------------------------------------------
Confidence 655543 45999999
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCccChhh-hhccccc-CCCcEEeCCCCCCCCCCeEEcCcccccc
Q 013952 234 ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 301 (433)
Q Consensus 234 ~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~vfa~Gd~~~~~ 301 (433)
...+ -..++.. ++|++.||+++||+.|||||+|||++.+
T Consensus 160 -----------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -----------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -----------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -----------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 1222 2345665 6788999999999999999999999875
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.79 E-value=2.4e-19 Score=156.24 Aligned_cols=176 Identities=23% Similarity=0.327 Sum_probs=102.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C--CCCCCCCccccccCCCC---CCCCCCc---ccc-----------
Q 013952 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKE-V--APYERPALSKAYLFPEG---TARLPGF---HVC----------- 68 (433)
Q Consensus 9 vIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~---~~~----------- 68 (433)
+||||||+||++|.+|++.|.++ |+|+|++ . ..|.+......+..+.. ...++.+ ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998753 9999998 2 11111000000111110 0111110 000
Q ss_pred -cCCCCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC--CccccCCCCCCC-CCCCCEE
Q 013952 69 -VGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF 142 (433)
Q Consensus 69 -~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g-~~~~~v~ 142 (433)
......+.+..+.++.++++..++.|.++...+. .|++.+++++.+|+||+|||. .|+.|+ +++ .. ...+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~-~~~~ 154 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAF-RPII 154 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGC-SEEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---cccccc-cceE
Confidence 0001122344556678999999999999987654 678888888999999999995 677666 566 33 3556
Q ss_pred EecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952 143 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 197 (433)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~ 197 (433)
+..+..+... .++++|+|||+|.+|++++..|.+.|.+|+++.|.+.+
T Consensus 155 h~~~~~~~~~-------~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 155 HSADWRDPED-------FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EGGG-STTGG-------CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ehhhcCChhh-------cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 6554433322 26899999999999999999999999999999998754
No 85
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=1.1e-16 Score=144.72 Aligned_cols=289 Identities=13% Similarity=0.188 Sum_probs=180.2
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc-ccccc---------CCCCCCC--------
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL-SKAYL---------FPEGTAR-------- 61 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~-~~~~~---------~~~~~~~-------- 61 (433)
||++.+|+|.||-||+.|+.|..|.+.+. .+...+|+. ...|...++ .+.-+ ....+..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 88889999999999999999999998752 238899998 444443322 11100 0000000
Q ss_pred -----CCCccc----ccCCCCCCCCHhHHHhCCcEEEeCceEEEE---ECCCC---EEEeCCCcEEecceEEEccCCCcc
Q 013952 62 -----LPGFHV----CVGSGGERLLPEWYKEKGIELILSTEIVRA---DIASK---TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 62 -----~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i---~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
+-.|-. ......+.....|....--.+..+++|..| +.+.. .+.+.++..++++.||+.+|.+|+
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 000000 000011223334444545667788888844 43332 255667778999999999999999
Q ss_pred ccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCCC-
Q 013952 127 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRL- 201 (433)
Q Consensus 127 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~~~~- 201 (433)
+|+. +.....+.+|+..++..- +..+. +.++|.|||+|.+|.|+...|... ..++.|+.|+..+.+.-
T Consensus 159 IP~~--f~~l~~~~vfHss~~~~~---~~~~~--~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~ 231 (436)
T COG3486 159 IPPC--FRSLIGERVFHSSEYLER---HPELL--QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY 231 (436)
T ss_pred CChH--HhCcCccceeehHHHHHh---hHHhh--cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence 9986 455555678876544321 11111 344599999999999999988654 34588999987766531
Q ss_pred -------CCHHHHH-------------------------------HHHHHHH------hcCcEEEcCCeEEEEEecCCCc
Q 013952 202 -------FTADIAA-------------------------------FYEGYYA------NKGIKIIKGTVAVGFTTNADGE 237 (433)
Q Consensus 202 -------~~~~~~~-------------------------------~l~~~l~------~~GV~v~~~~~v~~i~~~~~g~ 237 (433)
|.++..+ .+....+ +..|.++.++.+..++...+|+
T Consensus 232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~ 311 (436)
T COG3486 232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR 311 (436)
T ss_pred chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence 1121111 1111111 2468899999999999866664
Q ss_pred EEEEEeCC-----CcEEECCEEEEcccCccChh-hh---hccccc-CCCcEEeCCCCCC-----CCCCeEEcCcccc
Q 013952 238 VKEVKLKD-----GRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKT-----SADDVYAVGDVAT 299 (433)
Q Consensus 238 ~~~v~~~~-----g~~i~~d~vi~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t-----~~~~vfa~Gd~~~ 299 (433)
..+.+.. .++++.|.||+|||++.... ++ ...+.. ++|...|+..++. ..-.||+.|-+..
T Consensus 312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 4454432 25789999999999885444 44 233444 6788999987654 2247999986654
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.78 E-value=4.7e-18 Score=157.97 Aligned_cols=247 Identities=16% Similarity=0.187 Sum_probs=133.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCc-cccccCCCCCCC-----CCCcccc-------cC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPAL-SKAYLFPEGTAR-----LPGFHVC-------VG 70 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~-------~~ 70 (433)
.+|+|+||.||++|+.|..|.+.+ ..+++.+|+. ...|...++ .+.-+....... -|..++. .+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999886 2339999988 444443222 111111110011 0110000 00
Q ss_pred --------C---CC---CCCCHhHHH-hCCcEEEeCceEEEEECCCC------EEEeC----CCcEEecceEEEccCCCc
Q 013952 71 --------S---GG---ERLLPEWYK-EKGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 125 (433)
Q Consensus 71 --------~---~~---~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lvlAtG~~~ 125 (433)
. .. +..+..|+. +..-.+..+.+|..|++... .|.+. +++++.+++||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 00 011122222 23444778889999886542 45552 346899999999999999
Q ss_pred cccCCCCCCCCC-CCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCCC--
Q 013952 126 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-- 200 (433)
Q Consensus 126 ~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~~-- 200 (433)
..|+. +.... ...+++..++.....- ....++|+|||||.+|.|++..|.+.+. +|+|+.|.+.+.+.
T Consensus 160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~ 232 (341)
T PF13434_consen 160 RIPEW--FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD 232 (341)
T ss_dssp ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred CCCcc--hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence 98875 34433 3789987765443211 1257899999999999999999988874 89999998765432
Q ss_pred ------CCCHH-------------------------------HHHHHHH-----HH-HhcCcEEEcCCeEEEEEecCCCc
Q 013952 201 ------LFTAD-------------------------------IAAFYEG-----YY-ANKGIKIIKGTVAVGFTTNADGE 237 (433)
Q Consensus 201 ------~~~~~-------------------------------~~~~l~~-----~l-~~~GV~v~~~~~v~~i~~~~~g~ 237 (433)
.++++ +.+.+.+ .+ .+..+.++.+++|++++..+++.
T Consensus 233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~ 312 (341)
T PF13434_consen 233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG 312 (341)
T ss_dssp -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence 12222 1111111 11 23357899999999998865433
Q ss_pred EEEEEeCC-----CcEEECCEEEEcccCc
Q 013952 238 VKEVKLKD-----GRTLEADIVVVGVGGR 261 (433)
Q Consensus 238 ~~~v~~~~-----g~~i~~d~vi~a~G~~ 261 (433)
..+.+.+ ..++++|.||+|||++
T Consensus 313 -~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 313 -VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 3555543 2478999999999975
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.3e-17 Score=160.69 Aligned_cols=186 Identities=17% Similarity=0.234 Sum_probs=120.3
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC---CCCCCCCCc-cccccCCCCCCCCCCcccc------cC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---VAPYERPAL-SKAYLFPEGTARLPGFHVC------VG 70 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~ 70 (433)
|++.++||+|||||++||++|++|+++|.+. ++|+|++ ...|...+- +-.+..+.....++.++.. ..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4566799999999999999999999999765 9999999 222222111 1111111112233333331 00
Q ss_pred CCCCCCCHhHHHhCCcE--EEeCceEEEEECCCC----EEEeCCCcE--EecceEEEccCC--CccccCCCCCCCCCC--
Q 013952 71 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATGS--TVLRLTDFGVEGADA-- 138 (433)
Q Consensus 71 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lvlAtG~--~~~~~~~~~~~g~~~-- 138 (433)
........+++++++.. +...+.|..++++.+ +|+++++.+ +.+|+||+|||- .|..|+ ++|.+.
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~---~~G~~~f~ 158 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD---FAGLDEFK 158 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC---CCCccCCC
Confidence 01122344555555543 233334444544432 477777755 559999999994 677777 455432
Q ss_pred CCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013952 139 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 198 (433)
Q Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~ 198 (433)
..+++..+..+...+ .+|+|+|||+|.+|++++..|.+.|.+|+++.|.+...
T Consensus 159 g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 159 GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 346666555555444 79999999999999999999999999999999886543
No 88
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.75 E-value=3.5e-18 Score=168.99 Aligned_cols=287 Identities=22% Similarity=0.287 Sum_probs=169.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
-++|.|||+|||||+||-.|.+.|+. |++.|+. +| .++++. +.+|..+.... ..++-.+++.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~----dr---~ggll~----ygipnmkldk~--vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERS----DR---VGGLLM----YGIPNMKLDKF--VVQRRVDLLEQE 1848 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEec----CC---cCceee----ecCCccchhHH--HHHHHHHHHHhh
Confidence 47999999999999999999999987 9999988 11 122221 22232221100 112345677789
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHH-----
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK----- 158 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~----- 158 (433)
|++|+.++++ ++.+.+ |+..-.+|.+|+|+|+. |+..| +||-+.+++...-.+.+.. -+..+.
T Consensus 1849 gi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d~ 1917 (2142)
T KOG0399|consen 1849 GIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLDG 1917 (2142)
T ss_pred CceEEeeccc------cccccH-HHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhcccccc
Confidence 9999998765 333332 33345789999999984 67666 7888877776432222221 111111
Q ss_pred ---hcCCCcEEEECCCHHHHHHHHHHHhCCCeEE-EEc--cCCc-------cCCC---CCCHHHH-HHHHHHHHhcCcEE
Q 013952 159 ---AKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVY--PEPW-------CMPR---LFTADIA-AFYEGYYANKGIKI 221 (433)
Q Consensus 159 ---~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~-li~--~~~~-------~~~~---~~~~~~~-~~l~~~l~~~GV~v 221 (433)
+.++|+|+|||||.+|.++...-.+.|++-. -++ +.+. +.|. .|.-+.. +..++ ..|-..
T Consensus 1918 ~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dp 1994 (2142)
T KOG0399|consen 1918 NYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDP 1994 (2142)
T ss_pred ceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCc
Confidence 1268999999999999999888888886432 222 1111 1111 1111111 11111 111111
Q ss_pred Ec-----------------CCeEE--EEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhh--ccccc-CCCcE
Q 013952 222 IK-----------------GTVAV--GFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGI 278 (433)
Q Consensus 222 ~~-----------------~~~v~--~i~~~~~g~~~~v~~~~-g~~i~~d~vi~a~G~~p~~~~~~--~~~~~-~~g~i 278 (433)
++ +-+.. +++.++.|+-.-++..+ .+.++||+||+|.|+........ .++.. .++.|
T Consensus 1995 r~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni 2074 (2142)
T KOG0399|consen 1995 RTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNI 2074 (2142)
T ss_pred ceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccc
Confidence 11 11111 12222333332223322 25799999999999865554332 23444 33444
Q ss_pred Ee-CCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 279 ET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 279 ~v-d~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.. ++.+.|.+++|||+|||-.+.. ++..|+++||.+|+.+-..
T Consensus 2075 ~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2075 LTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred cCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHHH
Confidence 43 4568899999999999998764 3455788999999987643
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.74 E-value=6.8e-17 Score=153.52 Aligned_cols=173 Identities=20% Similarity=0.170 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCCcEEEECCCHHHHHHH-HHHH----hCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952 151 DKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 225 (433)
Q Consensus 151 ~~~~~~~~~~~~~~v~ViG~G~~g~e~a-~~l~----~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~ 225 (433)
..+.+.++......=.|++.+.+|+|.+ ..+. +.|.+|+++...+..++. .++.+.+.+.+++.|++++.++
T Consensus 204 ~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~ 280 (422)
T PRK05329 204 EALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGD 280 (422)
T ss_pred HHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCC
Confidence 3444444443333447788999999998 6664 569999999888887763 5889999999999999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-----------hcc------------------cccC
Q 013952 226 VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-----------KGQ------------------VAEN 274 (433)
Q Consensus 226 ~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~~p~~~~~-----------~~~------------------~~~~ 274 (433)
+|.+++. .++.+..+...++ ..+++|.+|+|+|+.++..+. ... ....
T Consensus 281 ~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~ 359 (422)
T PRK05329 281 EVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFL 359 (422)
T ss_pred EEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchh
Confidence 9999986 3455555555455 358999999999986554431 000 0112
Q ss_pred CCcEEeCCCCC-------CCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 275 KGGIETDDFFK-------TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 275 ~g~i~vd~~~~-------t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.-+|.+|++|| +..+|+||+|++.+++++..... ....|+..|-.|+++|...
T Consensus 360 ~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 360 QFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAEE 419 (422)
T ss_pred hcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHHh
Confidence 23466666655 46899999999999988643211 1234667778888887653
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=8.5e-16 Score=145.95 Aligned_cols=238 Identities=18% Similarity=0.209 Sum_probs=142.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--C-CCCCCC--------Ccccc--ccCCCCCCCCCCcccccC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--V-APYERP--------ALSKA--YLFPEGTARLPGFHVCVG 70 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~-~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~ 70 (433)
...+|+|||||+|||++|+.|.+.|++ ++++|+. . ..|..+ ..-+. ...+.....++.+++...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence 368999999999999999999999998 9999999 2 222222 00000 011112222333332211
Q ss_pred -C-------CCCCCCHhHHHhCCc--EEEeCceEEEEECCCC---EEEeCCC----cEEecceEEEccCCC--ccccCCC
Q 013952 71 -S-------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VLRLTDF 131 (433)
Q Consensus 71 -~-------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~lvlAtG~~--~~~~~~~ 131 (433)
. +..+.+.++.+.+++ .+..+++|..++...+ .|.+.++ ++.-||.|++|||-. |+.|..+
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence 0 111233444455554 4667777777776552 4555443 467899999999976 6666642
Q ss_pred CCC-CCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHH
Q 013952 132 GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 210 (433)
Q Consensus 132 ~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l 210 (433)
+.. ..-...+++..++.....+ .+|+|+|||.|.+|+|++..+++...+|++..+ ...... ...
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~------ 226 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP------ 226 (448)
T ss_pred CCchhhcCCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc------
Confidence 210 0223456666665544433 689999999999999999999988888887754 100000 000
Q ss_pred HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh
Q 013952 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK 268 (433)
Q Consensus 211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~ 268 (433)
. ....++..+. .|..+.. ++ .+.+.++....+|.+|+|||+.-...++.
T Consensus 227 -~-~~~~~~~~~~--~i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~ 275 (448)
T KOG1399|consen 227 -E-ILGENLWQVP--SIKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLE 275 (448)
T ss_pred -c-eeecceEEcc--ccccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceec
Confidence 0 0111222221 1444432 33 35556777889999999999876665554
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.65 E-value=1.2e-14 Score=137.96 Aligned_cols=274 Identities=16% Similarity=0.181 Sum_probs=150.1
Q ss_pred cCeEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
.++|+||||||||++||.+|. +.|++ |+|+|+...++ |++...-+...+.... ....+...+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg-------GLvR~GVaPdh~~~k~-----v~~~f~~~~~~ 103 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY-------GLIRYGVAPDHIHVKN-----TYKTFDPVFLS 103 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc-------cEEEEeCCCCCccHHH-----HHHHHHHHHhh
Confidence 468999999999999999765 55766 99999994333 2222111111111100 01122233444
Q ss_pred CCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCC------CC-CCC----CCCEEEecCH-----
Q 013952 84 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI----- 147 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~------~~-g~~----~~~v~~~~~~----- 147 (433)
.++++..+..+ +..++.++- .-.||.||+|+|+.+..++.++ +. |.+ ..++|...++
T Consensus 104 ~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYN 176 (506)
T PTZ00188 104 PNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYN 176 (506)
T ss_pred CCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeec
Confidence 67777643222 122222222 2389999999999865443100 00 222 2355543332
Q ss_pred HHH-----HHHHHHHHhc-CCCcEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCccCCC
Q 013952 148 DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMPR 200 (433)
Q Consensus 148 ~~~-----~~~~~~~~~~-~~~~v~ViG~G~~g~e~a~~l~--------------------~~g-~~V~li~~~~~~~~~ 200 (433)
.+. ..+..++..+ ..++++|||.|++++++|..|. +.+ .+|+++.|....-..
T Consensus 177 g~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaa 256 (506)
T PTZ00188 177 NMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSS 256 (506)
T ss_pred CCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhC
Confidence 111 0121122111 3578999999999999999753 223 357777765322110
Q ss_pred CC------------------CHH-----------------------HHHHHHHHHH----------hcCcEEEcCCeEEE
Q 013952 201 LF------------------TAD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAVG 229 (433)
Q Consensus 201 ~~------------------~~~-----------------------~~~~l~~~l~----------~~GV~v~~~~~v~~ 229 (433)
+- +.+ ..+.+.+..+ .+.+.+++...+.+
T Consensus 257 FT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~e 336 (506)
T PTZ00188 257 FTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQ 336 (506)
T ss_pred CCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceE
Confidence 00 000 1112222221 13467888888888
Q ss_pred EEecCCCcEEEEEeC-----------CC--cEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCC--CCCCeEEc
Q 013952 230 FTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYAV 294 (433)
Q Consensus 230 i~~~~~g~~~~v~~~-----------~g--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~vfa~ 294 (433)
|.. .++++.++++. .| ++++||+|+-++|++...- . ++..++. +.. ...+. ..|++|++
T Consensus 337 i~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd~~-~~n-~~grv~~~~~g~Y~~ 410 (506)
T PTZ00188 337 IRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYNQS-VQM-FKEDIGQHKFAIFKA 410 (506)
T ss_pred EEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcccc-CCC-CCCcccCCCCCcEEe
Confidence 875 34677777765 23 3699999999999875431 1 2222311 211 11221 37999999
Q ss_pred CccccccccccC
Q 013952 295 GDVATFPMKLYR 306 (433)
Q Consensus 295 Gd~~~~~~~~~~ 306 (433)
|.+-.+|....+
T Consensus 411 GWiKrGP~GvIg 422 (506)
T PTZ00188 411 GWFDKGPKGNIA 422 (506)
T ss_pred eecCcCCCceec
Confidence 999988876444
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.64 E-value=2.4e-15 Score=134.07 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=164.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|.|||+||||+++|..|.++ .+...|.|+|+...||. +....-++..|..+. ....+...++..
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvPFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~~ 86 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVPFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEHE 86 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCcccc-------eeeeccCCCCcchhh-----HHHHHHHHhhcc
Confidence 46999999999999999999986 34566999999944442 211111222222211 112355556666
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCC-ccccCCCCCCCCCCCCEEEecCHHHHHHHHHHH------
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI------ 157 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~------ 157 (433)
...|..+..+ ++.+.+.+ -+-.||.+|||.|+. ++..+ |||.+..+|++.+.+-. +..-+
T Consensus 87 rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Sarefv~---Wyng~P~~~~l 153 (468)
T KOG1800|consen 87 RFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREFVG---WYNGLPENQNL 153 (468)
T ss_pred ceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccC---CCCcccccceehhhhhh---hccCCCccccc
Confidence 6777666443 22233322 235799999999985 56566 79988888887654332 22211
Q ss_pred -HhcCCCcEEEECCCHHHHHHHHHHHhC----------------------CCeEEEEccCCccCCCC-------------
Q 013952 158 -KAKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL------------- 201 (433)
Q Consensus 158 -~~~~~~~v~ViG~G~~g~e~a~~l~~~----------------------g~~V~li~~~~~~~~~~------------- 201 (433)
.+....+++|||.|.+++++|..|..- =.+|+++.|.......+
T Consensus 154 e~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~ 233 (468)
T KOG1800|consen 154 EPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPG 233 (468)
T ss_pred CcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCC
Confidence 112468999999999999999887431 13577776653321100
Q ss_pred ---------C---------------CHHHHHHHHHHHHhc---------CcE---EEcCCeEEEEEecCCCcEEE-----
Q 013952 202 ---------F---------------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADGEVKE----- 240 (433)
Q Consensus 202 ---------~---------------~~~~~~~l~~~l~~~---------GV~---v~~~~~v~~i~~~~~g~~~~----- 240 (433)
+ -+++.+.+.+.++++ +.+ +.+.....+|...+++ +..
T Consensus 234 ~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~ 312 (468)
T KOG1800|consen 234 ARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQV 312 (468)
T ss_pred cccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEe
Confidence 0 012333333333331 111 1111122233321111 111
Q ss_pred --------EEeCCCcEEECCEEEEcccCccChhhhhccccc-CCCcEEeCCCCCC----CCCCeEEcCccccccccccCc
Q 013952 241 --------VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT----SADDVYAVGDVATFPMKLYRE 307 (433)
Q Consensus 241 --------v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t----~~~~vfa~Gd~~~~~~~~~~~ 307 (433)
+.+.+-++++|++++.++|++... +..++.. +..+++-|.+.+. -.|++|++|.|..+|..
T Consensus 313 t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~G---- 386 (468)
T KOG1800|consen 313 TILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTG---- 386 (468)
T ss_pred eeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcc----
Confidence 112223579999999999976432 2224444 3334444444443 35999999999988763
Q ss_pred ccccccHHHHHHHHHHHHHHHhcc
Q 013952 308 MRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 308 ~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.+..++.++..++..|...
T Consensus 387 -----vIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 387 -----VIATTMQDAFEVADTIVQD 405 (468)
T ss_pred -----eeeehhhhHHHHHHHHHHH
Confidence 3445556666666666544
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.57 E-value=5.3e-13 Score=122.89 Aligned_cols=198 Identities=18% Similarity=0.309 Sum_probs=112.9
Q ss_pred EEecceEEEccCCCccccCCCCCCCC-CCCCEEEecCHHHHHHHHH--------HHH---hcCCCcEEEE---CCCH---
Q 013952 111 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY--- 172 (433)
Q Consensus 111 ~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~--------~~~---~~~~~~v~Vi---G~G~--- 172 (433)
++....+|+|||-.+.......--|. ..++|++.- +.+++.. .++ ..++++|++| |+..
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 57889999999988765442111111 123444322 2222211 011 1267888885 6543
Q ss_pred -----H------HHHHHHHHHhC--CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013952 173 -----I------GLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 239 (433)
Q Consensus 173 -----~------g~e~a~~l~~~--g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~ 239 (433)
+ ++.-|....++ ..+|++....-+. +....-+.+.+.-++.||+++.+ ++.+|...+++. .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCe-e
Confidence 1 12222233332 3456665433222 34444455556556889999988 466666545555 3
Q ss_pred EEEeCC---C--cEEECCEEEEcccCccChhh--hh--ccccc-CCCcEEeC-CCCC---CCCCCeEEcCcccccccccc
Q 013952 240 EVKLKD---G--RTLEADIVVVGVGGRPLISL--FK--GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLY 305 (433)
Q Consensus 240 ~v~~~~---g--~~i~~d~vi~a~G~~p~~~~--~~--~~~~~-~~g~i~vd-~~~~---t~~~~vfa~Gd~~~~~~~~~ 305 (433)
.|+..| | .++++|+|++++|..|.... +. .++.. ++|++... +.++ |+.++||.+|-+.+.
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP----- 523 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP----- 523 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----
Confidence 444433 2 47999999999999885542 22 34555 57777665 5554 588999999976664
Q ss_pred CcccccccHHHHHHHHHHHHHHH
Q 013952 306 REMRRVEHVDHARKSAEQAVKTI 328 (433)
Q Consensus 306 ~~~~~~~~~~~A~~~g~~aa~~i 328 (433)
+.+..++.||..||...
T Consensus 524 ------kdI~~siaqa~aAA~kA 540 (622)
T COG1148 524 ------KDIADSIAQAKAAAAKA 540 (622)
T ss_pred ------ccHHHHHHHhHHHHHHH
Confidence 34555666666655443
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.52 E-value=2.3e-13 Score=98.89 Aligned_cols=80 Identities=34% Similarity=0.620 Sum_probs=73.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 243 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~ 243 (433)
+++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.++++..++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 589999999999999999999999999999999995 489999999999999999999999999999986666 55 888
Q ss_pred CCC
Q 013952 244 KDG 246 (433)
Q Consensus 244 ~~g 246 (433)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 876
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=2.3e-12 Score=117.27 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952 176 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254 (433)
Q Consensus 176 e~a~~l~~~g~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 254 (433)
++..++.++|.+...= ...+++|. .-..++.+.+.+.+++.||+++++++|.+++. ++....+.+++|+++.||.+
T Consensus 83 d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~--~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 83 DFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK--DDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe--cCceEEEEcCCCCEEEccEE
Confidence 4455666677654443 33444443 33568899999999999999999999999998 44557899999989999999
Q ss_pred EEccc--Ccc
Q 013952 255 VVGVG--GRP 262 (433)
Q Consensus 255 i~a~G--~~p 262 (433)
|+|+| ..|
T Consensus 160 ilAtGG~S~P 169 (408)
T COG2081 160 ILATGGKSWP 169 (408)
T ss_pred EEecCCcCCC
Confidence 99999 545
No 96
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.37 E-value=1.4e-10 Score=109.18 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=96.8
Q ss_pred hCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccC
Q 013952 183 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGG 260 (433)
Q Consensus 183 ~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g--~~i~~d~vi~a~G~ 260 (433)
..|+.|..+- .+.|......+.+.+.+.+++.|++++.+++|.++.. +++++..+.+.++ ..+.+|.+|+|+|.
T Consensus 245 ~~g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 245 ATGLTLCELP---TMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHCCCEEeCC---CCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 3477776663 3334445789999999999999999999999999986 4566777776665 47999999999997
Q ss_pred ccChhhh-----------hccc------------------ccCCCcEEeCCCCCC-----CCCCeEEcCccccccccccC
Q 013952 261 RPLISLF-----------KGQV------------------AENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYR 306 (433)
Q Consensus 261 ~p~~~~~-----------~~~~------------------~~~~g~i~vd~~~~t-----~~~~vfa~Gd~~~~~~~~~~ 306 (433)
.-...+. +..+ ....-+|.+|++||. ..+|+||+|-+.+++++...
T Consensus 321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~ 400 (419)
T TIGR03378 321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE 400 (419)
T ss_pred CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence 6222221 1111 012236889999983 38999999999999886432
Q ss_pred cccccccHHHHHHHHHHHHHHH
Q 013952 307 EMRRVEHVDHARKSAEQAVKTI 328 (433)
Q Consensus 307 ~~~~~~~~~~A~~~g~~aa~~i 328 (433)
.. -...|+..|-.||++|
T Consensus 401 gc----G~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 401 GC----GSGVAVSTALHAAEQI 418 (419)
T ss_pred CC----CchhHHHHHHHHHHhh
Confidence 11 1134666777777776
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.33 E-value=2.3e-10 Score=106.99 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=98.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCC--CCCCCccc----c------
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGT--ARLPGFHV----C------ 68 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~--~~~~~~~~----~------ 68 (433)
++|+|||||++|++.|.+|.+.-.....|.|+|+. . .+|........+..+... ...|..+. .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 58999999999999999999975434449999998 2 333321111100000000 00011000 0
Q ss_pred --------------------cCCCCCCCCHhHHHhCC---cEEEeCceEEEEECC----CCEEEeCCCcEEecceEEEcc
Q 013952 69 --------------------VGSGGERLLPEWYKEKG---IELILSTEIVRADIA----SKTLLSATGLIFKYQILVIAT 121 (433)
Q Consensus 69 --------------------~~~~~~~~~~~~~~~~~---v~~~~~~~v~~i~~~----~~~v~~~~~~~~~~d~lvlAt 121 (433)
+|....+.+..++++.. +.++.. +++++.+. ...+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00000111112222222 555553 55555444 234667788888999999999
Q ss_pred CCCccccCC--CCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCC
Q 013952 122 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP 195 (433)
Q Consensus 122 G~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~ 195 (433)
|..+..++. ..+++. +.. ..+...+..+ ..++ ...+|+|+|+|.+.++....|...|. +||.+.|..
T Consensus 161 gh~~~~~~~~~~~~~~~--~~~--ia~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGS--PRL--IADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCC--cce--eccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 975533331 001111 111 1111111111 1111 24569999999999999999999875 689888764
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.22 E-value=7.6e-11 Score=112.08 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952 176 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254 (433)
Q Consensus 176 e~a~~l~~~g~~V~li~~~~~~~~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 254 (433)
++..++.+.|.... .....++.|.. -..++.+.+++.+++.||+++++++|.++.. .++....|.++++..+.||.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 55667778887644 34455555532 2357888999999999999999999999987 455567888877789999999
Q ss_pred EEcccCcc
Q 013952 255 VVGVGGRP 262 (433)
Q Consensus 255 i~a~G~~p 262 (433)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999543
No 99
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.21 E-value=3.5e-10 Score=99.67 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhh-----------h
Q 013952 201 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISL-----------F 267 (433)
Q Consensus 201 ~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~--~i~~d~vi~a~G~~p~~~~-----------~ 267 (433)
...-.+.+.+.+.+++.|.-++.+.+|.+.+- .+++++.|.+.+.. .+.+|..|+|+|.--...+ +
T Consensus 255 llGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 255 LLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 34556788889999999999999999999886 67888899888764 4679999999995221111 1
Q ss_pred hcc------------------cccCCCcEEeCCCCCC-----CCCCeEEcCccccccccccCcccccccHHHHHHHHHHH
Q 013952 268 KGQ------------------VAENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQA 324 (433)
Q Consensus 268 ~~~------------------~~~~~g~i~vd~~~~t-----~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~a 324 (433)
... -....-++.+|++||. ...|+||+|.+.+++++..... -...|+..|..|
T Consensus 334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~~a 409 (421)
T COG3075 334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTALHA 409 (421)
T ss_pred hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHHHH
Confidence 000 0112235788888886 3589999999999988653111 012244456666
Q ss_pred HHHHhcc
Q 013952 325 VKTIMAT 331 (433)
Q Consensus 325 a~~i~~~ 331 (433)
|..|...
T Consensus 410 a~qi~~~ 416 (421)
T COG3075 410 AEQIAER 416 (421)
T ss_pred HHHHHHH
Confidence 6666654
No 100
>PLN02463 lycopene beta cyclase
Probab=99.16 E-value=2.4e-09 Score=103.47 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=71.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCcc--ccc--cC--CCCCCCCCCcccc--------c
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALS--KAY--LF--PEGTARLPGFHVC--------V 69 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~--~~~--~~--~~~~~~~~~~~~~--------~ 69 (433)
.+||+||||||||+++|..|++.|++ |+|+|+. ...+.+.... ..+ +. .......+..... .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999988 9999997 3333221100 000 00 0000000000000 0
Q ss_pred CCC--------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 70 GSG--------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 70 ~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
... ....+.+.+.+.+++++. ..|.++...+. .|.+.+|.++++|.||.|+|....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 001122233457899875 58888876554 467788889999999999998654
No 101
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.14 E-value=4.9e-10 Score=104.69 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=39.3
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCccc-ccccHHHHHHHHHHHHHHHhccC
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR-RVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
..|+|.||.+.||+.|++||+|.|+..-. .|..+ ...+.-.+.--|..+|++|.+..
T Consensus 340 ~mGGI~vD~~GrTsi~gLYAiGEvA~TGl--HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 340 TMGGIAVDANGRTSIPGLYAIGEVACTGL--HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ecccEEECCCCcccCcccEEeeeeccccc--ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 56999999999999999999999986421 22211 11233444455677888887653
No 102
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.12 E-value=2.2e-09 Score=101.16 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~-i~~d~vi~a~G~~p 262 (433)
..++...+.+.++++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|--.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence 4567888888889999999999999999985565 56778888866 99999999999644
No 103
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.10 E-value=3.5e-10 Score=110.82 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=39.4
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCccccc-ccHHHHHHHHHHHHHHHhc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 330 (433)
..|+|.+|.+.||++||+||+|+|+. .. +|..+.. .+...+.-.|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999974 32 2221111 3445566778888888865
No 104
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.09 E-value=5.2e-10 Score=111.43 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=31.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||+|.|||+||.++++.|.+ |+|+||.
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~ 48 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKA 48 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEcc
Confidence 58999999999999999999999887 9999998
No 105
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.06 E-value=4.1e-10 Score=113.23 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEccCCccCCCC-------------CCHHHHHHHHHHHHhcCcEEEcCC
Q 013952 161 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 225 (433)
Q Consensus 161 ~~~~v~ViG~G~--~g~e~a~~l~~~g~~V~li~~~~~~~~~~-------------~~~~~~~~l~~~l~~~GV~v~~~~ 225 (433)
.++++.|+|+++ ++.+++..+...+.+++++.+...+++.. ....+...+.+.+++.||++++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467889999988 89999999998888887765544433321 124577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEeCC--Cc-EEECC-EEEEcccCccCh
Q 013952 226 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRPLI 264 (433)
Q Consensus 226 ~v~~i~~~~~g~~~~v~~~~--g~-~i~~d-~vi~a~G~~p~~ 264 (433)
.++++.. +++++..|...+ ++ .+.++ .||+|+|..++.
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 9999986 467777776643 32 47786 799999976643
No 106
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.06 E-value=1.6e-09 Score=109.23 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=30.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~ 40 (433)
.+||||||||.||++||.++++. |.+ |+||||.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~ 45 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKA 45 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECC
Confidence 47999999999999999999998 877 9999998
No 107
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.04 E-value=7.2e-10 Score=110.83 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=77.9
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952 161 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~-------l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 233 (433)
.++.++++|+++++++++.. +.+.+.+|++....+..... ....+...+.+.+++.||++++++++.++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36678899999999998865 56666677665443333222 5778888899999999999999999999986
Q ss_pred CCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013952 234 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 268 (433)
Q Consensus 234 ~~g~~~~v~~~-~g~--~i~~d-~vi~a~G-~~p~~~~~~ 268 (433)
+++++..|... +++ .+.++ .||+|+| +.+|.++++
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 46777777653 343 47785 5888777 677766654
No 108
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.03 E-value=1.5e-09 Score=107.17 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=40.4
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.+.||++||+||+|+|+. ... |..+. -.+...+.-.|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999974 322 21111 134566778889999888753
No 109
>PRK09897 hypothetical protein; Provisional
Probab=99.02 E-value=5.4e-09 Score=102.64 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=90.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C----CCCCCCCccccccCCCCCCCCC----Ccccc--------
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V----APYERPALSKAYLFPEGTARLP----GFHVC-------- 68 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------- 68 (433)
++|+|||||++|+++|.+|.+.+. ..+|+|+|++ . .+|.....+..++.......++ .+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 589999999999999999998652 3569999996 2 2222211111111110000000 00000
Q ss_pred ---------------------cCCCCCCCC---HhHHHhCC--cEEEeCceEEEEECCCCE--EEeCC-CcEEecceEEE
Q 013952 69 ---------------------VGSGGERLL---PEWYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI 119 (433)
Q Consensus 69 ---------------------~~~~~~~~~---~~~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvl 119 (433)
.|......+ .+.+...| +.++..++|+++...+.. +.+.+ +..+.+|+||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 000000111 11122344 677778899999876654 44434 46799999999
Q ss_pred ccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhC
Q 013952 120 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 184 (433)
Q Consensus 120 AtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~ 184 (433)
|||..+..+. .+. ...+ .+..... + +....+.+|+|+|.|.++++.+..|...
T Consensus 161 AtGh~~p~~~----~~~--~~yi--~~pw~~~-~---~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEE----EAT--RTYF--PSPWSGL-M---EAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCC----hhh--cccc--CCCCcch-h---hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9997432111 111 1111 1111111 1 1111468999999999999999998755
No 110
>PRK08275 putative oxidoreductase; Provisional
Probab=99.02 E-value=5.3e-09 Score=104.78 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=29.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~ 40 (433)
.+||||||||.||++||.++++. |.+ |+|+||.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~---VilveK~ 43 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALR---VLLLEKA 43 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEeCC
Confidence 47999999999999999999987 455 9999998
No 111
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.01 E-value=1.5e-08 Score=97.54 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
+..+.+.+.+.+++.|++++++++|.++... ++. ..|.+.++ ++.+|.||+|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcchH
Confidence 5688889999999999999999999999863 333 46777776 7999999999997653
No 112
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.99 E-value=4.8e-09 Score=110.61 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=31.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||||.|||+||.++++.|.+ |+|++|.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~ 45 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKA 45 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecc
Confidence 57999999999999999999999887 9999998
No 113
>PRK10015 oxidoreductase; Provisional
Probab=98.99 E-value=4.9e-09 Score=101.62 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc-------ccCCCC----C--CCCCC---
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKA-------YLFPEG----T--ARLPG--- 64 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~-------~~~~~~----~--~~~~~--- 64 (433)
|++.+||||||||||||++||+.|++.|++ |+|||+...+..+...... .+.+.. + .....
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 555679999999999999999999999998 9999998222221110000 000000 0 00000
Q ss_pred --------cccccCC----------C--CCCC----CHhHHHhCCcEEEeCceEEEEECCCCEEE--eCCCcEEecceEE
Q 013952 65 --------FHVCVGS----------G--GERL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV 118 (433)
Q Consensus 65 --------~~~~~~~----------~--~~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~lv 118 (433)
....... . .... +.+.+++.|++++.++.|..+..++..+. ..++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence 0000000 0 0011 22334567999999989988876544432 3345679999999
Q ss_pred EccCCCcc
Q 013952 119 IATGSTVL 126 (433)
Q Consensus 119 lAtG~~~~ 126 (433)
+|+|....
T Consensus 158 ~AdG~~s~ 165 (429)
T PRK10015 158 LADGVNSM 165 (429)
T ss_pred EccCcchh
Confidence 99997544
No 114
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.98 E-value=3.2e-09 Score=102.94 Aligned_cols=123 Identities=22% Similarity=0.380 Sum_probs=73.9
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCC------------CC-CCCC---C
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPE------------GT-ARLP---G 64 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~------------~~-~~~~---~ 64 (433)
|...+|||+||||||||++||+.|+++|++ |+|+|+...+..+.. .++.+... .+ .... .
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~-~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~ 76 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNV-TGGRLYAHSLEHIIPGFADSAPVERLITHEK 76 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCccc-ccceechhhHHHHhhhhhhcCcccceeeeee
Confidence 555579999999999999999999999998 999999822211111 01000000 00 0000 0
Q ss_pred -----------cccccC---C-C--C--------CCCCHhHHHhCCcEEEeCceEEEEECCCCEE--EeCCCcEEecceE
Q 013952 65 -----------FHVCVG---S-G--G--------ERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQIL 117 (433)
Q Consensus 65 -----------~~~~~~---~-~--~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~l 117 (433)
+.+... . . . ...+.+.+++.|++++.++.|..+..++..+ ...++.++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~V 156 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTV 156 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEE
Confidence 000000 0 0 0 0112233445899999999999886544432 3446678999999
Q ss_pred EEccCCCccc
Q 013952 118 VIATGSTVLR 127 (433)
Q Consensus 118 vlAtG~~~~~ 127 (433)
|.|+|.....
T Consensus 157 I~A~G~~s~l 166 (428)
T PRK10157 157 ILADGVNSIL 166 (428)
T ss_pred EEEeCCCHHH
Confidence 9999986543
No 115
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.97 E-value=3e-08 Score=95.40 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=67.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC-ccc-cc----cCCCCCCCCCC--------cccccCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA-LSK-AY----LFPEGTARLPG--------FHVCVGS 71 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~-~~~-~~----~~~~~~~~~~~--------~~~~~~~ 71 (433)
||+|||||+||+++|..|++.|++ |+|||+. .....+.. ... .+ +.........+ .......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999999987 9999988 32222110 000 00 00000000001 0000000
Q ss_pred --------CCCCCCHhHHHhCCcEEEeCceEEEEECC-CC--EEEeCCCcEEecceEEEccCCCc
Q 013952 72 --------GGERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 125 (433)
Q Consensus 72 --------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lvlAtG~~~ 125 (433)
.....+.+.+.+.+++++.+ .+..+... .. .|.+.++.+++++.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00111223334568888654 78777655 22 45666777899999999999866
No 116
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.97 E-value=1.5e-07 Score=89.70 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=67.9
Q ss_pred eEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCC-------CCCCCCcccccCCC----
Q 013952 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKE-VAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 72 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l--~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 72 (433)
||||||||+||+++|.+| ++.|.+ |+|||+. ..++.+.. ...++.... .+..+.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555655 9999998 44332221 111111110 01111111111000
Q ss_pred ---C-----CCCCHhH----HHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 73 ---G-----ERLLPEW----YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 73 ---~-----~~~~~~~----~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
. ...+.+. +...++. ..+..|..|+.... .+.+.+|.+++++.||-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~~-~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGVI-RLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCeE-EEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0 0112222 2223444 45568999987776 577889999999999999996543
No 117
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.96 E-value=5.4e-09 Score=103.49 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.+.||++|++||+|+|++ ..+ |..+. -.+...+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999975 222 21111 134566777888888888654
No 118
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.96 E-value=9e-10 Score=104.65 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
+..+.+.+.+.+++.|++++++++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 678899999999999999999999999997 45666669999996 9999999999975433
No 119
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.95 E-value=5e-09 Score=100.72 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=73.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc--------cCCCC---CCCCCCccc------
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAY--------LFPEG---TARLPGFHV------ 67 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~------ 67 (433)
+|||+||||||||++||+.|++.|++ |+|+|+...+..+++....+ ..... ...+.+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 69999999999999999999999987 99999982222222111111 00000 000000000
Q ss_pred -ccCCC-----------CCCCCHhHHHhCCcEEEeCceEEEEECCCCE--E-EeCCCcEEecceEEEccCCCcccc
Q 013952 68 -CVGSG-----------GERLLPEWYKEKGIELILSTEIVRADIASKT--L-LSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 68 -~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
.+..+ ..+.+.+..++.|++++.++.+..+..++.. + +..++.+++++.+|.|+|......
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~ 155 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA 155 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence 00000 0111333445689999999999988766542 2 223336899999999999765433
No 120
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.88 E-value=9.9e-09 Score=102.32 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.+.||++||+||+|+|+. ..+ |..+. -.+...+.-.|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999974 322 22111 134566777889999888754
No 121
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.88 E-value=2.6e-08 Score=100.07 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=40.0
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.||.+++|++|++||+|+|++.. .+|..+. -.+...|.-.|++|++++...
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred eCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997521 1222111 134566777888888887654
No 122
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.4e-08 Score=100.66 Aligned_cols=55 Identities=27% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.+.+|++|++||+|+|+. .. +|..+. -.+...+.-.|+.|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGL---HGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCC---CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999973 22 222111 124455667788888887654
No 123
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.87 E-value=3.6e-08 Score=91.28 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=80.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---c--------CCC----CCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ ++|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997541 1 121 12367888999999999999998 8899
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
+++. ++....+.+.+++++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~--~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDL--SDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEe--cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 9987 3334567777888999999999999988654
No 124
>PRK06847 hypothetical protein; Provisional
Probab=98.87 E-value=1.2e-08 Score=97.79 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCC-cc---------ccc----------------
Q 013952 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPA-LS---------KAY---------------- 53 (433)
Q Consensus 2 m~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~-~~---------~~~---------------- 53 (433)
|.+.+||+|||||++|+++|..|++.|++ |+|+|+. . ....... +. -++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 45678999999999999999999999987 9999988 2 1111000 00 000
Q ss_pred cCCCCC--CCCCCccc---ccC-------CCCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEE
Q 013952 54 LFPEGT--ARLPGFHV---CVG-------SGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 119 (433)
Q Consensus 54 ~~~~~~--~~~~~~~~---~~~-------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvl 119 (433)
+..... ...+.... ... ......+.+.+.+.+++++.++.+..++.+.. .+.+.++.++.+|.||.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 000000 00000000 000 00011223334457899999999998876554 45667888899999999
Q ss_pred ccCCCccc
Q 013952 120 ATGSTVLR 127 (433)
Q Consensus 120 AtG~~~~~ 127 (433)
|+|..+..
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99976543
No 125
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.86 E-value=8.5e-09 Score=92.36 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=67.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCC-----------CCC------CCccc
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGT-----------ARL------PGFHV 67 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~~ 67 (433)
.+||+||||||||++||++|++.|++ |+|+|+...+-.. ...++.+..... ..+ ++...
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~ 100 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYV 100 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCCceeecCccee
Confidence 58999999999999999999999988 9999998211111 011111111000 000 00000
Q ss_pred ccCCCCCCCCHhHHHhCCcEEEeCceEEEEECCCC-EE---EeC-----------CCcEEecceEEEccCCCc
Q 013952 68 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TL---LSA-----------TGLIFKYQILVIATGSTV 125 (433)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~~~~~~~d~lvlAtG~~~ 125 (433)
.........+.+...+.|++++.++.+.++..++. .+ ... +..++.++.+|+|||...
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 00000011233344568999999988888764332 22 111 224789999999999654
No 126
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.85 E-value=1.8e-08 Score=101.06 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.+.+|++|++||+|+|+... .+|..+. -.+...+.-.|+.|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999997421 1222111 134566777888888887653
No 127
>PRK07190 hypothetical protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=99.67 Aligned_cols=124 Identities=21% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCC-cc---------cccc----CCCCC-----
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPA-LS---------KAYL----FPEGT----- 59 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~-~~---------~~~~----~~~~~----- 59 (433)
|.+..+||+||||||+|+++|..|+++|.+ |+|||+. . ....+.. +. .+++ .....
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 666678999999999999999999999988 9999998 2 1122210 00 0000 00000
Q ss_pred ----CC-----------CCCcc----cccCC-CCCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceE
Q 013952 60 ----AR-----------LPGFH----VCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 117 (433)
Q Consensus 60 ----~~-----------~~~~~----~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 117 (433)
.. .+... ...+. .....+.+.+.+.|+++..+++++.+..++. .+.+.+++++++++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 00 00000 00000 0001122344567999999999999876554 345567778999999
Q ss_pred EEccCCCccc
Q 013952 118 VIATGSTVLR 127 (433)
Q Consensus 118 vlAtG~~~~~ 127 (433)
|.|+|.....
T Consensus 158 VgADG~~S~v 167 (487)
T PRK07190 158 IGADGSRSFV 167 (487)
T ss_pred EECCCCCHHH
Confidence 9999986643
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.82 E-value=1.8e-08 Score=93.04 Aligned_cols=117 Identities=24% Similarity=0.381 Sum_probs=69.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCC--Ccccc---cc----------------CCCCCC--C
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERP--ALSKA---YL----------------FPEGTA--R 61 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~--~~~~~---~~----------------~~~~~~--~ 61 (433)
|||+|||||++|+++|..|++.|.+ |+|+|+. ......+ .+... .+ ...... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 9999999 3211000 00000 00 000000 0
Q ss_pred CC---Cccccc-CCCCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCC-CcEEecceEEEccCCCc
Q 013952 62 LP---GFHVCV-GSGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSAT-GLIFKYQILVIATGSTV 125 (433)
Q Consensus 62 ~~---~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvlAtG~~~ 125 (433)
.+ .....+ .......+.+.+.+.+++++.++++..+..++.. +.+.+ +.++++|++|.|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 00 000000 0001122334455679999999999887655543 33333 45799999999999754
No 129
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.82 E-value=1.1e-08 Score=102.45 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEcCC
Q 013952 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKE 40 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~----~~g~~~~~V~lie~~ 40 (433)
||||||||.|||+||.+++ +.|.+ |+|++|.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEcc
Confidence 7999999999999999998 56776 9999998
No 130
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.81 E-value=2.4e-07 Score=89.33 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
-..++.+.+.+.++..|.+++++++|.+|..++++++..|++.+|+++.|+.||......|..
T Consensus 230 G~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 230 GLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred CHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccc
Confidence 346788999999999999999999999998755677889999999999999999988877753
No 131
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.81 E-value=1.9e-08 Score=101.28 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHH-HHHHHHHHhCCCeEEEEccCCccCC-------------CCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952 162 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMP-------------RLFTADIAAFYEGYYANKGIKIIKGTVA 227 (433)
Q Consensus 162 ~~~v~ViG~G~~g-~e~a~~l~~~g~~V~li~~~~~~~~-------------~~~~~~~~~~l~~~l~~~GV~v~~~~~v 227 (433)
..++.++|++.++ .+++..+...+..+.+..+..++++ ......+...+.+.+++.|+++++++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566778877665 6777776665555444332221111 0124567788889999999999999999
Q ss_pred EEEEecCCCcEEEEEeC--CCc-EEEC-CEEEEcccCccC
Q 013952 228 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGGRPL 263 (433)
Q Consensus 228 ~~i~~~~~g~~~~v~~~--~g~-~i~~-d~vi~a~G~~p~ 263 (433)
+++.. +++++..|... ++. ++.+ +.||+|+|...+
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99876 36777666553 332 5788 999999995543
No 132
>PRK06834 hypothetical protein; Provisional
Probab=98.80 E-value=3.3e-08 Score=97.36 Aligned_cols=122 Identities=26% Similarity=0.383 Sum_probs=75.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCC--CCC-Cccc-------------cccCCCCCCCCCCc--
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPY--ERP-ALSK-------------AYLFPEGTARLPGF-- 65 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~--~~~-~~~~-------------~~~~~~~~~~~~~~-- 65 (433)
.+||+||||||+|+++|..|++.|++ |+|+|+. .... .|. .++. .+...........+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 68999999999999999999999998 9999998 3221 111 0100 00000000000000
Q ss_pred -ccccC---C--C---------CCCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 66 -HVCVG---S--G---------GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 66 -~~~~~---~--~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
..... . . ....+.+.+++.+++++.+++++.+..++. .+++.++.++++|+||.|.|......
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 00000 0 0 001122334567999999999999877655 34556777899999999999876544
Q ss_pred C
Q 013952 129 T 129 (433)
Q Consensus 129 ~ 129 (433)
.
T Consensus 160 ~ 160 (488)
T PRK06834 160 K 160 (488)
T ss_pred h
Confidence 3
No 133
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.80 E-value=4e-07 Score=81.62 Aligned_cols=172 Identities=17% Similarity=0.122 Sum_probs=110.4
Q ss_pred HHhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------------
Q 013952 157 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------ 200 (433)
Q Consensus 157 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------ 200 (433)
+.+.....|+|||+|+.|+-+|..|++.|.+|.++++.+.+...
T Consensus 20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 33334568999999999999999999999999999876442110
Q ss_pred -CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hh
Q 013952 201 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF 267 (433)
Q Consensus 201 -~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vi~a~G~~p~~~-~~ 267 (433)
....++...+.+..++.|++++.++.+.++...+++++..+... +...+.++.||.|+|...... .+
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 01234556677777889999999999999876444466666543 124799999999999654332 22
Q ss_pred hc-----cccc-CCCc--------EEeCCCCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 268 KG-----QVAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 268 ~~-----~~~~-~~g~--------i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
.. .... ..+. .+|+..-+ -+|++|++|=.+.... |.++--+....=...|+.||+.|+..+
T Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~~~ 254 (257)
T PRK04176 180 ARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILEKL 254 (257)
T ss_pred HHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHHHh
Confidence 11 1111 0111 11222222 3799999997765432 222222334434468899998887654
No 134
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.80 E-value=2.6e-08 Score=88.90 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=67.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCC------CCCC--CCcccc-cCC----
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEG------TARL--PGFHVC-VGS---- 71 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~-~~~---- 71 (433)
.+||+||||||+|++||++|+++|++ |+|+|++..+-.. ....+.+.+.. ...+ .+.++. .+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~ 96 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVV 96 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCCCeeeccCceEE
Confidence 58999999999999999999999987 9999999211110 10111111000 0000 000100 000
Q ss_pred ----CCCCCCHhHHHhCCcEEEeCceEEEEECCCC--E---EEeC-----------CCcEEecceEEEccCCC
Q 013952 72 ----GGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST 124 (433)
Q Consensus 72 ----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lvlAtG~~ 124 (433)
.....+.+...+.+++++.++.+.++..++. . |.+. +..+++++.+|.|||..
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 0111223334568999999999988765433 2 2221 12468999999999964
No 135
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.78 E-value=2e-08 Score=96.74 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=74.8
Q ss_pred CC-CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC-------cc---------ccccCCCC---C
Q 013952 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA-------LS---------KAYLFPEG---T 59 (433)
Q Consensus 1 Mm-~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~-------~~---------~~~~~~~~---~ 59 (433)
|| +..+||+|||||++|+++|..|+++|++ |+|+|+. ...+.... +. -+++..-. .
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARA 77 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhC
Confidence 44 3468999999999999999999999987 9999997 32211000 00 00000000 0
Q ss_pred CCCCCcc---------ccc-----CCCC----------CCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952 60 ARLPGFH---------VCV-----GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFK 113 (433)
Q Consensus 60 ~~~~~~~---------~~~-----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 113 (433)
..+.... ..+ +... ...+.+.+++.++++..++.++++..++. ++++.++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 157 (392)
T PRK08773 78 QPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE 157 (392)
T ss_pred CcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence 0000000 000 0000 01122234457999999999998876554 35567778899
Q ss_pred cceEEEccCCCccc
Q 013952 114 YQILVIATGSTVLR 127 (433)
Q Consensus 114 ~d~lvlAtG~~~~~ 127 (433)
+|.||.|+|.....
T Consensus 158 a~~vV~AdG~~S~v 171 (392)
T PRK08773 158 AALAIAADGAASTL 171 (392)
T ss_pred eCEEEEecCCCchH
Confidence 99999999987643
No 136
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.78 E-value=9.5e-08 Score=93.82 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+..+...+.+.+++.|++++.++.|.+++. ++ ...|.+.+| ++.||.||+|+|..
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEccccc
Confidence 567888899999999999999999999975 22 245777777 69999999999954
No 137
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.78 E-value=1.8e-07 Score=89.20 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+.+. |++++.+++|.+++. + .|.+.+| .+.||.||+|+|...
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 566777887777765 999999999999964 2 5777777 478999999999754
No 138
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.78 E-value=3.9e-08 Score=97.87 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
..+.+.+.+.+++.|+++++++.|.+|.. +++++..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 57888999999999999999999999987 3566678999999889999999998854
No 139
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.78 E-value=2.8e-08 Score=99.04 Aligned_cols=53 Identities=26% Similarity=0.172 Sum_probs=36.9
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCccccc-ccHHHHHHHHHHHHHHHh
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIM 329 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~ 329 (433)
..|+|.+|.+.||++||+||+|+|+. +. +|..+.. .+...+.--|+.+++++.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTGV---HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccCC---CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999974 22 2221111 234455556778887774
No 140
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.77 E-value=6.5e-07 Score=86.73 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+..+...+.+.+++.|++++.+++|.++...+++.+..|.+.+| .+.++.||+|+|..
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 45666777888899999999999999997534566667888887 69999998887753
No 141
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.77 E-value=4.6e-07 Score=89.32 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi~a~G-~~p~~~~~ 267 (433)
...+...+.+.+++.|+++++++++.++.. +++++..+... ++ ..+.++.||+|+| +..|.+++
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 356778888889999999999999999987 46777777663 23 3689999999999 44444444
No 142
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.76 E-value=1.8e-07 Score=91.30 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcc--CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013952 172 YIGLELSAALKINNIDVSMVYPEPWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVKLK-D 245 (433)
Q Consensus 172 ~~g~e~a~~l~~~g~~V~li~~~~~~--~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~--g~~~~v~~~-~ 245 (433)
.++.|+...+.+.=..+.-+.....+ ....-.+.+...+.+.++++||+|+++++|+++..+ ++ +++.++... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 57889988887652222111111111 111123788899999999999999999999999873 22 567777774 2
Q ss_pred Cc-----EEECCEEEEcccCc
Q 013952 246 GR-----TLEADIVVVGVGGR 261 (433)
Q Consensus 246 g~-----~i~~d~vi~a~G~~ 261 (433)
|+ ..+.|.||+++|.-
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred CceeEEEecCCCEEEEeCCcC
Confidence 32 35689999999953
No 143
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.76 E-value=2.2e-07 Score=86.26 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=65.8
Q ss_pred HHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 181 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 181 l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
+...+....++....+-+....-+.+.+.+.+.+++.|++++++++|..++. +++.+..+.+.+|.++++|.||+|+|+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence 3344544444433323333335678999999999999999999999999987 566678899999999999999999999
Q ss_pred ccChhhh
Q 013952 261 RPLISLF 267 (433)
Q Consensus 261 ~p~~~~~ 267 (433)
....++-
T Consensus 229 sg~dw~~ 235 (486)
T COG2509 229 SGRDWFE 235 (486)
T ss_pred chHHHHH
Confidence 8776543
No 144
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.74 E-value=4.5e-07 Score=87.04 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+..+.+.+.+.+++.|++++.+++|.++..+ ++. ..|.+.++ ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence 5677888888889999999999999999872 333 45777666 79999999999964
No 145
>PRK09126 hypothetical protein; Provisional
Probab=98.74 E-value=7.8e-08 Score=92.68 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=73.9
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCC-CCCCccc---------------ccc---CCCCCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPY-ERPALSK---------------AYL---FPEGTA 60 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~-~~~~~~~---------------~~~---~~~~~~ 60 (433)
|| ++||+||||||+|+++|..|+++|++ |+|+|+. .... ..+.... +++ ......
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 67 68999999999999999999999998 9999998 3110 0000000 000 000000
Q ss_pred CCCCcc---------cccCC-----CCC----------CCCHhHH-HhCCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952 61 RLPGFH---------VCVGS-----GGE----------RLLPEWY-KEKGIELILSTEIVRADIASK--TLLSATGLIFK 113 (433)
Q Consensus 61 ~~~~~~---------~~~~~-----~~~----------~~~~~~~-~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 113 (433)
...... ..+.. ... ..+.+.+ +..+++++.++.+..+..++. .|.+.++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 000000 00000 000 0011111 235899999999998876544 45667888999
Q ss_pred cceEEEccCCCccccC
Q 013952 114 YQILVIATGSTVLRLT 129 (433)
Q Consensus 114 ~d~lvlAtG~~~~~~~ 129 (433)
+|.+|.|.|.......
T Consensus 156 a~~vI~AdG~~S~vr~ 171 (392)
T PRK09126 156 ARLLVAADSRFSATRR 171 (392)
T ss_pred eCEEEEeCCCCchhhH
Confidence 9999999998665443
No 146
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.74 E-value=3.6e-08 Score=94.86 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=35.0
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
||++.+||+|||||++|+++|..|++.|.+ |+|+|+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~ 39 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPE 39 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCC
Confidence 777889999999999999999999999987 9999998
No 147
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.74 E-value=4.3e-07 Score=88.28 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+++.|++++++++|++++. .++.+..+.+.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 457778888888999999999999999986 3444556776655 799999999999754
No 148
>PRK06184 hypothetical protein; Provisional
Probab=98.74 E-value=5.5e-08 Score=96.71 Aligned_cols=121 Identities=22% Similarity=0.225 Sum_probs=72.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCC-cc---------ccc----------------cC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAP--YERPA-LS---------KAY----------------LF 55 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~-~~---------~~~----------------~~ 55 (433)
+++||+||||||+||++|..|+++|++ |+|+|+...+ ..+.. +. -++ +.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 368999999999999999999999998 9999998211 11100 00 000 00
Q ss_pred CCCC-C--CCC-------CcccccC-----CCCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEe---CCCcEEecc
Q 013952 56 PEGT-A--RLP-------GFHVCVG-----SGGERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 115 (433)
Q Consensus 56 ~~~~-~--~~~-------~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 115 (433)
.... . .+. ..+.... ......+.+.+.+.++++..++++.+++.++.. +++ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 0000 0 000 0000000 000011233345578999999999998765543 334 455689999
Q ss_pred eEEEccCCCccc
Q 013952 116 ILVIATGSTVLR 127 (433)
Q Consensus 116 ~lvlAtG~~~~~ 127 (433)
+||.|+|.....
T Consensus 159 ~vVgADG~~S~v 170 (502)
T PRK06184 159 YLVGADGGRSFV 170 (502)
T ss_pred EEEECCCCchHH
Confidence 999999986543
No 149
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.73 E-value=1.3e-06 Score=77.99 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=108.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------CC---------------------------C
Q 013952 160 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------RL---------------------------F 202 (433)
Q Consensus 160 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------~~---------------------------~ 202 (433)
...-.++|||+|+.|+-+|..|++.|.+|.++++.+.+.. .. .
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~ 98 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD 98 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence 3466899999999999999999999999999988654310 00 1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEECCEEEEcccCccCh-hhhhc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKD-----------GRTLEADIVVVGVGGRPLI-SLFKG 269 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~~-----------g~~i~~d~vi~a~G~~p~~-~~~~~ 269 (433)
..++.+.+.+...+.|++++.++.+.++...+++ ++..+.+.. ...++++.||.|+|..... .++..
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHH
Confidence 1245566677778899999999999998763332 566766542 2478999999999965433 33321
Q ss_pred c--ccc-C-----CCcEEeCC-------CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 270 Q--VAE-N-----KGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 270 ~--~~~-~-----~g~i~vd~-------~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
. +.. . .+....+. +-+--+|++|++|=.+.... |.++--+....=...|+.||+.|+..
T Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 179 KIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred HcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHHHH
Confidence 1 111 1 01111110 11124899999997665322 22222233443346789999888754
No 150
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.72 E-value=3.9e-07 Score=87.31 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+.+.|++++.+++|+++... ++ ...+.+.+| .+.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 4677777778888899999999999999873 33 356777777 799999999999653
No 151
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.70 E-value=7.8e-08 Score=95.07 Aligned_cols=37 Identities=41% Similarity=0.582 Sum_probs=34.3
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|+..++||||||||.|||.||..+++.|.+ |+|+||.
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~ 38 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKA 38 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcc
Confidence 566689999999999999999999999987 9999998
No 152
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.70 E-value=7.4e-08 Score=94.89 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
-..+.+.+.+.+++.|++|+++++|++|.. ++|+...+...+|+.+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 457899999999999999999999999997 566667788888878999999998775
No 153
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.69 E-value=5.1e-07 Score=87.58 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+++.|++++.+++|.++..+ ++. ..+.+.++ .++.+|.||+|+|...
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 3466778888899999999999999999863 333 33433322 3699999999999654
No 154
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.68 E-value=1.1e-07 Score=91.58 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC--------c---------cccccCCC-----
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA--------L---------SKAYLFPE----- 57 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~--------~---------~~~~~~~~----- 57 (433)
|..+.+||+|||||++|+++|..|++.|++ |+|+|+. ...+.... + .-+++...
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 566789999999999999999999999987 9999987 32221100 0 00000000
Q ss_pred CC-CC-----CCCcccccC-----CCC------C----CCCHhHHHhC-CcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952 58 GT-AR-----LPGFHVCVG-----SGG------E----RLLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFK 113 (433)
Q Consensus 58 ~~-~~-----~~~~~~~~~-----~~~------~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 113 (433)
.. .. .......+. ... . ..+.+.+.+. +++++.++.+..+..++. .|.+.++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00 000000000 000 0 0111222334 899998889988875544 35667788899
Q ss_pred cceEEEccCCCccc
Q 013952 114 YQILVIATGSTVLR 127 (433)
Q Consensus 114 ~d~lvlAtG~~~~~ 127 (433)
+|.||.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999976543
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.67 E-value=5.6e-08 Score=94.96 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=73.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..+++.|.+ |+++++......+ . .. .......+.+++.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~----------~-~~-----------~~~~~~~~~l~~~ 211 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPR----------E-EP-----------SVAALAKQYMEED 211 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCC----------C-CH-----------HHHHHHHHHHHHc
Confidence 46899999999999999999998876 9999988211100 0 00 0012345667889
Q ss_pred CcEEEeCceEEEEECCCCEE-EeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKTL-LSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v-~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++.++..+ ...+++++.+|.+++|+|..|...
T Consensus 212 GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 212 GITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 99999999999998765544 334567899999999999998753
No 156
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.67 E-value=4e-07 Score=89.12 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHh----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~----~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+++ .| ++++++++|.++.. .++..+.|.+.+| ++.+|.||+|+|...
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 45778888888888 77 88999999999987 3355567888877 699999999999654
No 157
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.67 E-value=1.7e-06 Score=85.92 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEECCEEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g--~~i~~d~vi~a~G-~~p~~~~~ 267 (433)
...+.+.+.+.+++.||+++++++++++.. +++++..+.. .++ ..+.++.||+|+| +.+|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 356788888889999999999999999986 4677766655 333 3689999999998 66665444
No 158
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.66 E-value=2e-07 Score=91.89 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..|++.|.+ |+++++...... ... . .....+.+.+++.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~--~~~---------~-----------~~~~~~~~~l~~~ 224 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRILP--GED---------A-----------EVSKVVAKALKKK 224 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCCC--CCC---------H-----------HHHHHHHHHHHHc
Confidence 36899999999999999999999876 999998811110 000 0 0012345667788
Q ss_pred CcEEEeCceEEEEECCCCEE--EeCCC--cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~ 128 (433)
+++++.++.+..++.+++.+ .+.++ .++++|.+++|+|..|...
T Consensus 225 gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 99999999999888665544 34455 4799999999999988654
No 159
>PRK07045 putative monooxygenase; Reviewed
Probab=98.66 E-value=8.6e-08 Score=92.22 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCCC-c---ccc------ccC---CCCCCCCCCc
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERPA-L---SKA------YLF---PEGTARLPGF 65 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~~-~---~~~------~~~---~~~~~~~~~~ 65 (433)
|++.++||+||||||+|+++|..|++.|++ |+|+|+. ... ..+.. + +.. ++. .........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 777789999999999999999999999998 9999988 211 10100 0 000 000 0000000000
Q ss_pred c----------cccCC----CC-----CCCCHhH----HH-hCCcEEEeCceEEEEECCCC----EEEeCCCcEEecceE
Q 013952 66 H----------VCVGS----GG-----ERLLPEW----YK-EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL 117 (433)
Q Consensus 66 ~----------~~~~~----~~-----~~~~~~~----~~-~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l 117 (433)
. ..... .. ...+.+. +. ..++++..++++..+..... .|.+.+++++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0 00000 00 0011111 11 24789999999998875432 366778889999999
Q ss_pred EEccCCCc
Q 013952 118 VIATGSTV 125 (433)
Q Consensus 118 vlAtG~~~ 125 (433)
|-|.|...
T Consensus 158 IgADG~~S 165 (388)
T PRK07045 158 VGADGARS 165 (388)
T ss_pred EECCCCCh
Confidence 99999765
No 160
>PRK07236 hypothetical protein; Provisional
Probab=98.65 E-value=2.2e-07 Score=89.26 Aligned_cols=119 Identities=20% Similarity=0.195 Sum_probs=69.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCC---ccc---cccCCCCCC-----CCCC--ccc--c
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-RPA---LSK---AYLFPEGTA-----RLPG--FHV--C 68 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-~~~---~~~---~~~~~~~~~-----~~~~--~~~--~ 68 (433)
.++|+|||||++|+++|..|++.|++ |+|+|+...+.. +.. +.. ..+..-... ..+. ... .
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 82 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDR 82 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeC
Confidence 58999999999999999999999998 999999821211 100 000 000000000 0000 000 0
Q ss_pred cCCC-----------CCCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 69 VGSG-----------GERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 69 ~~~~-----------~~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
.+.. ....+...+.+ .+++++.++.++.+..++. ++++.+++++++|.||.|-|....
T Consensus 83 ~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 83 DGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 0000 00001111211 2467888999999876554 366788889999999999997553
No 161
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.65 E-value=4.7e-07 Score=87.06 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952 176 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254 (433)
Q Consensus 176 e~a~~l~~~g~~V~li~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 254 (433)
++..++.+.|.+++..... +.++. ....++.+.+.+.+++.|+++++++.|.++.. ++....+++ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK--DDNGFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCeEEEEE-CCcEEEcCEE
Confidence 4556677788877765433 33321 13578889999999999999999999999976 233345666 4568999999
Q ss_pred EEcccCcc
Q 013952 255 VVGVGGRP 262 (433)
Q Consensus 255 i~a~G~~p 262 (433)
|+|+|...
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999643
No 162
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.64 E-value=7.3e-07 Score=85.62 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChh
Q 013952 203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~~~ 265 (433)
..++.+.+.+.+++.+ |+++.+++|+.++.++ +.+ .+++. +|+++.||++|-|=|......
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v-~v~l~~dG~~~~a~llVgADG~~S~vR 165 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGV-TVTLSFDGETLDADLLVGADGANSAVR 165 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-Cce-EEEEcCCCcEEecCEEEECCCCchHHH
Confidence 3566777888887766 9999999999999833 333 37777 999999999999999765443
No 163
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64 E-value=1.3e-07 Score=91.53 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=72.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEcCC-CC-CCC--CCC-c---------cccccCC--CCCCCC-----
Q 013952 6 FKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKE-VA-PYE--RPA-L---------SKAYLFP--EGTARL----- 62 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~-~~-~~~--~~~-~---------~~~~~~~--~~~~~~----- 62 (433)
+||+||||||+|+++|..|+++| ++ |+|+|+. .. +.. +.. + .-+++.. ......
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 78 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI 78 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence 79999999999999999999985 66 9999998 21 111 100 0 0000000 000000
Q ss_pred ----------CC-cccc----cCCC---------CCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCCCcEEecce
Q 013952 63 ----------PG-FHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQI 116 (433)
Q Consensus 63 ----------~~-~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~ 116 (433)
.. .... .+.. ....+.+.+.+.+++++.++.++.++.++.. +.+.++.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 00 0000 0000 0112233344579999999999998766554 5567788899999
Q ss_pred EEEccCCCcccc
Q 013952 117 LVIATGSTVLRL 128 (433)
Q Consensus 117 lvlAtG~~~~~~ 128 (433)
||.|+|......
T Consensus 159 vI~AdG~~S~vr 170 (403)
T PRK07333 159 LVAADGARSKLR 170 (403)
T ss_pred EEEcCCCChHHH
Confidence 999999866543
No 164
>PLN02697 lycopene epsilon cyclase
Probab=98.63 E-value=1.3e-07 Score=93.09 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=67.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cc-ccc----cCCCCCCCCCCcccc--------cC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPA-LS-KAY----LFPEGTARLPGFHVC--------VG 70 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~~--------~~ 70 (433)
.+||+||||||||+++|..|++.|++ |++||+. .++..+. .. ..+ +........++.... .+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~-~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~ 183 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPD-LPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG 183 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCc-ccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence 58999999999999999999999998 9999987 1121110 00 000 000000000000000 00
Q ss_pred CCC--------CCCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCCc
Q 013952 71 SGG--------ERLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 125 (433)
Q Consensus 71 ~~~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~ 125 (433)
... ...+.+.+.+.|+++. +..|..+..+... +.+.++.++.++.||.|+|...
T Consensus 184 ~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 184 RAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000 0112223345689984 4688888754332 3456778899999999999765
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.63 E-value=1e-06 Score=87.75 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=81.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCCCCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
...++|||+|+.|+.+|..+++.|.+|+++... ..+ .+.....++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999998642 111 0111356788899999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
++... +....+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 291 ~I~~~--~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPA--AGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEec--CCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99873 23456777888889999999999987754
No 166
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.63 E-value=1.1e-07 Score=92.06 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=72.6
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC--C----CCC-Ccc---------ccccCCCC---CC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP--Y----ERP-ALS---------KAYLFPEG---TA 60 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~--~----~~~-~~~---------~~~~~~~~---~~ 60 (433)
||. .+||+|||||++|+++|..|++.|++ |+|+|+. ..+ . .|. .++ -+++..-. ..
T Consensus 1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CCC-cCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 664 68999999999999999999999988 9999985 211 0 110 010 00000000 00
Q ss_pred CCCCcccc---------cCCC-C-C-------------CCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEe
Q 013952 61 RLPGFHVC---------VGSG-G-E-------------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 113 (433)
Q Consensus 61 ~~~~~~~~---------~~~~-~-~-------------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 113 (433)
....+... +... . . ..+.+.+.+ .++++..++++..+..++. .|.+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 00000000 0000 0 0 001111222 3789999999998865443 56778888999
Q ss_pred cceEEEccCCCccc
Q 013952 114 YQILVIATGSTVLR 127 (433)
Q Consensus 114 ~d~lvlAtG~~~~~ 127 (433)
+|.||.|.|.....
T Consensus 157 a~lvIgADG~~S~v 170 (405)
T PRK08850 157 AKLVVGADGANSWL 170 (405)
T ss_pred eCEEEEeCCCCChh
Confidence 99999999976543
No 167
>PRK06185 hypothetical protein; Provisional
Probab=98.62 E-value=1.2e-07 Score=91.81 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=33.5
Q ss_pred CC-CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm-~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|| ...+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~ 38 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKH 38 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 44 3469999999999999999999999987 9999987
No 168
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.62 E-value=1.9e-07 Score=92.08 Aligned_cols=118 Identities=17% Similarity=0.258 Sum_probs=68.5
Q ss_pred CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCC-CCCccccccCC-CCC---CCCCCc----------c
Q 013952 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYE-RPALSKAYLFP-EGT---ARLPGF----------H 66 (433)
Q Consensus 3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~-~~~~~~~~~~~-~~~---~~~~~~----------~ 66 (433)
+..|||||||||+||+.||..+++.|.+ |+|+|++ ..... .|..+.+.... .-. ..+.+. .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 3469999999999999999999999998 9999987 22211 11111110000 000 000000 0
Q ss_pred cc-----cCC-------CCC-----CCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCCC
Q 013952 67 VC-----VGS-------GGE-----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 124 (433)
Q Consensus 67 ~~-----~~~-------~~~-----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~ 124 (433)
.. .+. ... ..+.+.+.+ .+++++.+ .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00 000 000 011122233 37888764 77777655543 567788899999999999974
No 169
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.2e-07 Score=79.41 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=31.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..||+||||||+||+||++|++.|++ |+++|++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERK 62 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEee
Confidence 35999999999999999999999998 9999999
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.61 E-value=1.1e-06 Score=87.39 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=81.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC-----------CCCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 227 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~--~~~~-----------~~~~~~~~~~~l~~~l~~~GV~v~~~~~v 227 (433)
....++|||+|+.|+.+|..+++.|.+|+++... ..+. +.....++.+.+.+.+++.||+++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4579999999999999999999999999998531 1111 11134678888889999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
.++.. ++....+.+.+|+.+.+|.+|+|+|.+|..
T Consensus 291 ~~I~~--~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIET--EDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEe--cCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 99976 333356777888889999999999988753
No 171
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.61 E-value=8.4e-07 Score=87.20 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vi~a~G~ 260 (433)
...+.+.+.+.+++.|++++++++|++|...+++++..+.+.+++ ++.+|.||+++..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 356778888888899999999999999986556777778886665 7999999999874
No 172
>PLN02612 phytoene desaturase
Probab=98.61 E-value=1.1e-06 Score=88.14 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
+..+.+.+.+.+++.|++++++++|++|..++++.+..+.+.+|+++++|.||+|++.
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 3567788888888999999999999999886677677788888989999999999873
No 173
>PRK08244 hypothetical protein; Provisional
Probab=98.60 E-value=1.9e-07 Score=92.75 Aligned_cols=120 Identities=23% Similarity=0.384 Sum_probs=70.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCc----------cccccCC--CCCCCCCC------
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPAL----------SKAYLFP--EGTARLPG------ 64 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~----------~~~~~~~--~~~~~~~~------ 64 (433)
++||+||||||+|+++|..|++.|++ |+|||+. . ....+... .-+++.. .....++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 38999999999999999999999998 9999998 2 11111000 0000000 00000000
Q ss_pred ---cccc---cCC---------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeC--CC-cEEecceEEEccCCC
Q 013952 65 ---FHVC---VGS---------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA--TG-LIFKYQILVIATGST 124 (433)
Q Consensus 65 ---~~~~---~~~---------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~--~~-~~~~~d~lvlAtG~~ 124 (433)
.... ... .....+.+.+++.++++..++++.++..++.. +.+. ++ .++++|+||.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0000 000 00111223345579999999999988765554 3333 34 479999999999987
Q ss_pred ccc
Q 013952 125 VLR 127 (433)
Q Consensus 125 ~~~ 127 (433)
...
T Consensus 159 S~v 161 (493)
T PRK08244 159 SIV 161 (493)
T ss_pred hHH
Confidence 643
No 174
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.60 E-value=6.6e-07 Score=73.97 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=28.3
Q ss_pred EEECCCHHHHHHHHHHHHcC--CCCCcEEEEcCC
Q 013952 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKE 40 (433)
Q Consensus 9 vIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~ 40 (433)
+|||+|++|++++.+|.+.. .+..+|+|+|+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 59999999999999999984 456789999998
No 175
>PRK07233 hypothetical protein; Provisional
Probab=98.59 E-value=2.8e-07 Score=90.13 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
...+.+.+.+.+++.|++++++++|.+|+.+ ++.+..+. .+++.+++|.||+|++.
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence 3567888888899999999999999999873 34443343 56678999999999985
No 176
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.59 E-value=7.8e-07 Score=91.37 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+++ |++++.+++|+++... ++. ..|.+.+|..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 56788888888888 9999999999999863 333 457888887788999999999754
No 177
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.58 E-value=5e-08 Score=75.50 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=47.1
Q ss_pred cCCcEEEEEE--eCCEEEEEEEecCChHHH-HHHHHHHHcCCCCCChhhhcccCCCccc
Q 013952 376 ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 431 (433)
Q Consensus 376 ~~~~~~~~~~--~~~~l~G~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
..++|.|+++ ++++|+|+|++|++++|+ +.++.+|++++|++++....-+-+++++
T Consensus 46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se 104 (110)
T PF02852_consen 46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSE 104 (110)
T ss_dssp TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGH
T ss_pred CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhH
Confidence 3678899887 579999999999999995 9999999999999877776666666654
No 178
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.58 E-value=2.2e-06 Score=82.47 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+..+.+.+.+.+++.| ..+..++.+..+... . ....|.+.+|+ +.+|.||+|+|...
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 5688889999999999 566668888888762 2 56788888886 99999999999543
No 179
>PRK08013 oxidoreductase; Provisional
Probab=98.56 E-value=2.3e-07 Score=89.61 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=71.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CC------CC-Ccc---------ccccCCCC---CCCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YE------RP-ALS---------KAYLFPEG---TARLP 63 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~------~~-~~~---------~~~~~~~~---~~~~~ 63 (433)
.+||+||||||+|+++|..|++.|++ |+|+|+. ... .. +. .+. -+++..-. ...+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 58999999999999999999999998 9999998 311 00 00 000 01110000 00000
Q ss_pred Ccc---------ccc-----CCCCC----------CCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecce
Q 013952 64 GFH---------VCV-----GSGGE----------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 116 (433)
Q Consensus 64 ~~~---------~~~-----~~~~~----------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 116 (433)
... ..+ +.... ..+.+.+.+ .+++++.++++..++.++. .+++.+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 000 000 00000 001111223 3799999999998865544 45667888999999
Q ss_pred EEEccCCCccc
Q 013952 117 LVIATGSTVLR 127 (433)
Q Consensus 117 lvlAtG~~~~~ 127 (433)
||-|.|.....
T Consensus 160 vVgADG~~S~v 170 (400)
T PRK08013 160 VVGADGANSWL 170 (400)
T ss_pred EEEeCCCCcHH
Confidence 99999976543
No 180
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.55 E-value=2.2e-07 Score=89.22 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=71.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCC--C------Ccc---------ccccCCC---CCCCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYER--P------ALS---------KAYLFPE---GTARLP 63 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~--~------~~~---------~~~~~~~---~~~~~~ 63 (433)
.+||+|||||++|+++|..|++.|++ |+|+|+. ...+.. + .++ -+++..- ....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 58999999999999999999999998 9999987 322211 0 000 0000000 000000
Q ss_pred Cc--------ccccCCCC---------C--CCCH----hHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceE
Q 013952 64 GF--------HVCVGSGG---------E--RLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 117 (433)
Q Consensus 64 ~~--------~~~~~~~~---------~--~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 117 (433)
.. ...+.... . ..+. +.+.. .+++++.++++.++..++. ++++.++.++++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 00 00000000 0 0011 11122 4689999999998876544 577888889999999
Q ss_pred EEccCCCccc
Q 013952 118 VIATGSTVLR 127 (433)
Q Consensus 118 vlAtG~~~~~ 127 (433)
|.|+|.....
T Consensus 160 IgADG~~S~v 169 (384)
T PRK08849 160 IGADGANSQV 169 (384)
T ss_pred EEecCCCchh
Confidence 9999986543
No 181
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.54 E-value=7.7e-07 Score=77.30 Aligned_cols=98 Identities=31% Similarity=0.467 Sum_probs=67.8
Q ss_pred EEECCCHHHHHHHHHHHhCCCe-EEEEccCCccC--------------CCCC----------------------------
Q 013952 166 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCM--------------PRLF---------------------------- 202 (433)
Q Consensus 166 ~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~--------------~~~~---------------------------- 202 (433)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99998763321 0000
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS 265 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~--~p~~~ 265 (433)
.+++.+.+++..++.+++++++++|+++..++++ ..|++.+++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245678888889999999999999999985444 7899999988999999999995 55544
No 182
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.53 E-value=7.9e-07 Score=85.66 Aligned_cols=99 Identities=14% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC--CCCCHHHH---------HHHHHHHHhcCcEEEcCCeEE
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP--RLFTADIA---------AFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~--~V~li~~~~~~~~--~~~~~~~~---------~~l~~~l~~~GV~v~~~~~v~ 228 (433)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+...- ..+...+. ..-.+.+++.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5789999999999999999999876 7999987643211 01222211 001344677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
.++. +. ..+.+.+|+++.+|.+|+|||.+|+.
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 24677888899999999999998854
No 183
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.53 E-value=3e-07 Score=88.72 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=71.6
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCC-Ccc---------ccccCC--CCCCCCCCcc
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERP-ALS---------KAYLFP--EGTARLPGFH 66 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~-~~~---------~~~~~~--~~~~~~~~~~ 66 (433)
|+ ...||+|||||++|+++|..|++.|++ |+|+|+. ... ..+. .+. -++... ........+.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 76 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLT 76 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceE
Confidence 55 468999999999999999999999998 9999998 211 0000 000 000000 0000000000
Q ss_pred c--------------------ccCCCC--------CCCCHhHHHhC-CcEEEeCceEEEEECCCC--EEEeCCCcEEecc
Q 013952 67 V--------------------CVGSGG--------ERLLPEWYKEK-GIELILSTEIVRADIASK--TLLSATGLIFKYQ 115 (433)
Q Consensus 67 ~--------------------~~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d 115 (433)
. ..+... ...+.+.+.+. +++++.++.+.+++.++. .+.+.++.++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 156 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGD 156 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecC
Confidence 0 000000 00111222233 489999999999876554 3556677889999
Q ss_pred eEEEccCCCccc
Q 013952 116 ILVIATGSTVLR 127 (433)
Q Consensus 116 ~lvlAtG~~~~~ 127 (433)
.||.|.|.....
T Consensus 157 ~vV~AdG~~S~~ 168 (396)
T PRK08163 157 ALIGCDGVKSVV 168 (396)
T ss_pred EEEECCCcChHH
Confidence 999999976543
No 184
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.53 E-value=2.4e-07 Score=86.58 Aligned_cols=113 Identities=23% Similarity=0.319 Sum_probs=62.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCC-CCcc-----ccccCCC------------CCCCC-----
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYER-PALS-----KAYLFPE------------GTARL----- 62 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~-~~~~-----~~~~~~~------------~~~~~----- 62 (433)
||+|||||+||..||+.+++.|.+ |+|+... ...... |..+ ++.+... ....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 899999999999999999999998 9999544 221111 1111 1110000 00000
Q ss_pred -----CCccc---ccCCCC-CCCCHhHHHh-CCcEEEeCceEEEEECCCCE---EEeCCCcEEecceEEEccCC
Q 013952 63 -----PGFHV---CVGSGG-ERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 123 (433)
Q Consensus 63 -----~~~~~---~~~~~~-~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~ 123 (433)
|.... ...... .....+.++. .+++++.. +|.++..+++. |.+.+|..+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000 000000 0112222333 68899874 89999877764 57789999999999999998
No 185
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.53 E-value=9.5e-07 Score=85.88 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL 263 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~ 263 (433)
...+.+.+.+.+++.||+++++++++++.. +++++..+... +|+ .+.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 467888899999999999999999999988 57788888776 443 5789999999996544
No 186
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.52 E-value=1.2e-07 Score=94.03 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
..+.+.+.+.+++.|++++++++|++|.. +++++..|.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 57888999999999999999999999987 4577889999999899999999998853
No 187
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.52 E-value=3.4e-06 Score=84.42 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCcc
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRP 262 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~~p 262 (433)
.+..+...+.+..+++|++++++++|+++.. +++++..|++. ++ .++.++.||.|+|...
T Consensus 147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 3567777788888999999999999999987 35666666652 23 3799999999999654
No 188
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.52 E-value=3.8e-07 Score=66.02 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=57.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 86 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (433)
+++|||||+.|+-+|..|++.|.+ |+++++...+. +.... .......+.+++.|+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~--~~~~~--------------------~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL--PGFDP--------------------DAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS--TTSSH--------------------HHHHHHHHHHHHTTE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh--hhcCH--------------------HHHHHHHHHHHHCCC
Confidence 589999999999999999999876 99999992111 00000 002345677888999
Q ss_pred EEEeCceEEEEECCCCE--EEeCCC
Q 013952 87 ELILSTEIVRADIASKT--LLSATG 109 (433)
Q Consensus 87 ~~~~~~~v~~i~~~~~~--v~~~~~ 109 (433)
+++.++.+..+..++.. |+++||
T Consensus 56 ~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 56 EVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEESEEEEEEEEETTSEEEEEETS
T ss_pred EEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999876653 555554
No 189
>PRK11445 putative oxidoreductase; Provisional
Probab=98.51 E-value=5.2e-07 Score=85.39 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 288 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 288 ~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.++++.+||+++...+.+| ..+..|...|..+++.+...
T Consensus 263 ~~~vvlVGDAAg~i~P~tG-----~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 263 KDNAFLIGEAAGFISPSSL-----EGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCCEEEEEcccCccCCccC-----ccHHHHHHhHHHHHHHHHhc
Confidence 4789999999999888776 56788999999999998754
No 190
>PRK06126 hypothetical protein; Provisional
Probab=98.51 E-value=7.2e-07 Score=89.74 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=32.0
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+||+|||||++|+++|..|+++|++ |+|+|+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~ 39 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVD---SILVERK 39 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCC
Confidence 458999999999999999999999998 9999988
No 191
>PRK07208 hypothetical protein; Provisional
Probab=98.51 E-value=2.1e-07 Score=92.21 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEEEEcccCc
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~vi~a~G~~ 261 (433)
..+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++...
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 4677888889999999999999999998854444444443 2343 68999999998853
No 192
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.50 E-value=7.3e-07 Score=86.75 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=32.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.++||+||||||||++||..|++.|++ |+|+|+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~ 71 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERK 71 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 368999999999999999999999998 9999998
No 193
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.50 E-value=3.8e-07 Score=88.29 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=71.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-C--CC-----CCCC---c---c------ccccCCC---CCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEV-A--PY-----ERPA---L---S------KAYLFPE---GTAR 61 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~--~~-----~~~~---~---~------~~~~~~~---~~~~ 61 (433)
.+||+|||||++|+++|..|++.|++ |+|+|+.. . +. ..+. + + -+++..- ....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 48999999999999999999999987 99999872 1 11 0000 0 0 0000000 0000
Q ss_pred CCCccc---------ccCC-----CC----------CCCCHhHHHhCCcEEEeCceEEEEECCCC--EEEeCCCcEEecc
Q 013952 62 LPGFHV---------CVGS-----GG----------ERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQ 115 (433)
Q Consensus 62 ~~~~~~---------~~~~-----~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d 115 (433)
...+.. .+.. .. ...+.+.+.+.+++++.++.+.+++.... .|.+.+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 000000 0000 00 00112223456899999999998876554 3566788889999
Q ss_pred eEEEccCCCccc
Q 013952 116 ILVIATGSTVLR 127 (433)
Q Consensus 116 ~lvlAtG~~~~~ 127 (433)
.||.|.|.....
T Consensus 159 ~vVgAdG~~S~v 170 (405)
T PRK05714 159 LVVAADGANSAV 170 (405)
T ss_pred EEEEecCCCchh
Confidence 999999976543
No 194
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.50 E-value=4e-07 Score=88.48 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=31.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecC
Confidence 58999999999999999999999988 9999998
No 195
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.50 E-value=3.8e-06 Score=81.96 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=89.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------------------------------
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------ 198 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------------------------------ 198 (433)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999988653210
Q ss_pred ---C---C----------C-CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEECCEEE
Q 013952 199 ---P---R----------L-FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV 255 (433)
Q Consensus 199 ---~---~----------~-~~~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~g--~--~i~~d~vi 255 (433)
+ . + -..++.+.+++..+..|+. ++++++|.+++. .+....|.+.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP--VDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee--cCCeEEEEEEcCCCceEEEEcCEEE
Confidence 0 0 0 0146777888888889988 899999999987 333456666432 2 46799999
Q ss_pred Eccc--CccChhhhhcccccCCCcEEeCCCCCC----CCCCeEEcCccc
Q 013952 256 VGVG--GRPLISLFKGQVAENKGGIETDDFFKT----SADDVYAVGDVA 298 (433)
Q Consensus 256 ~a~G--~~p~~~~~~~~~~~~~g~i~vd~~~~t----~~~~vfa~Gd~~ 298 (433)
+|+| ..|+..-++ ++..-.|.+.--..++. ..++|.++|--.
T Consensus 167 vAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 167 VCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred EeccCCCCCcCCCCC-CcccCCceEEEecccCCccccCCCEEEEECCCc
Confidence 9999 566554332 22111122211112232 457788888543
No 196
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.50 E-value=1.9e-07 Score=83.18 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
.....+.++..+++.|+.|+.+..+..++. ++++....|.+.+|..+.++.+|+++|..-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 467778899999999999999999988863 345667889999998899999999999653
No 197
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.49 E-value=7.1e-07 Score=85.92 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=31.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~ 37 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPR 37 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 58999999999999999999999987 9999998
No 198
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.49 E-value=4.3e-07 Score=87.67 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=34.3
Q ss_pred CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 84 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
.+++++.++.+.++...+. .+.+.++.++.+|.||.|.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 4789999999998875554 356677778999999999997654
No 199
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.47 E-value=4.9e-06 Score=81.42 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~--~i~~d~vi~a~G-~~p~~~~~ 267 (433)
...+.+.+.+.+++.|++++++++++++..++++++..+... +++ .+.++.||+|+| +..|.++.
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHH
Confidence 467888899999999999999999999987556777766553 343 478999999999 55555544
No 200
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=9.9e-06 Score=81.80 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~---g~~~~v~~---~~g~--~i~~d~vi~a~G~~p 262 (433)
...+.+.+.+.+++.||+++.++.+.++..+++ |++.++.. .+++ .+.++.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356778888888899999999999999976332 77777754 3554 578999999999543
No 201
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.47 E-value=1.3e-06 Score=86.70 Aligned_cols=37 Identities=24% Similarity=0.572 Sum_probs=34.0
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
||+.++||+|||||+.|+++|+.|+++|++ |+|+|+.
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~ 38 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKD 38 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 445579999999999999999999999998 9999998
No 202
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.47 E-value=1.1e-06 Score=87.33 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-----~~i~~d~vi~a~G~ 260 (433)
...+.+.+.+.+++.|++++++++|++|.. ++++...+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 467889999999999999999999999987 3455555665554 57899999999885
No 203
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.46 E-value=5.9e-07 Score=90.31 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=31.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++||+||||||+|+++|..|++.|++ |+|||+.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~ 55 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDD 55 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCC
Confidence 57999999999999999999999998 9999998
No 204
>PRK07121 hypothetical protein; Validated
Probab=98.46 E-value=6.1e-06 Score=81.84 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEEC-CEEEEcccC-ccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEA-DIVVVGVGG-RPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~-d~vi~a~G~-~p~~~~~ 267 (433)
...+.+.+.+.+++.|++++++++++++..++++++..|...+ + ..+.+ +.||+|+|- ..|.+++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 4567788888899999999999999999874457887776643 3 25788 999999994 4444444
No 205
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.45 E-value=7.2e-06 Score=80.66 Aligned_cols=39 Identities=38% Similarity=0.543 Sum_probs=32.3
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 220 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 220 ~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
+++++++|++|+..+++ ..|.+.+|+++.+|.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 89999999999873333 5677888889999999999884
No 206
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.45 E-value=2.1e-07 Score=90.34 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=28.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc--ccCCC----------------CCCCCCCc---
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKA--YLFPE----------------GTARLPGF--- 65 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~--~~~~~----------------~~~~~~~~--- 65 (433)
||||||||+||++||..+++.|.+ |+|||+...+-.. ....+ .+... ........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~-~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~ 76 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGM-ATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQE 76 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGG-GGGSSS-EETTEEHHHHHHHHHHHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCc-ceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccc
Confidence 899999999999999999999998 9999999211100 00000 00000 00000000
Q ss_pred ---c----cccCCC-CCCCCHhHHHhCCcEEEeCceEEEEECCCCE---EEeCC---CcEEecceEEEccCC
Q 013952 66 ---H----VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 123 (433)
Q Consensus 66 ---~----~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lvlAtG~ 123 (433)
. ..+... ....+.+++.+.|++++.++.+..+..++.. |.+.+ ..++.++.+|-|||-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 77 DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 001111 1234556667789999999999988877643 34433 467999999999993
No 207
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.44 E-value=7.7e-07 Score=85.56 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|||+||||||||+++|+.|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 7999999999999999999999998 9999987
No 208
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.44 E-value=9.4e-07 Score=86.12 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=74.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+|+|||||++|+.+|..|++.|.+ |+++++......+ . +. ......+.+.+++.|
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~~-~-------------~~-------~~~~~~~~~~l~~~g 193 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILNK-L-------------FD-------EEMNQIVEEELKKHE 193 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCcc-c-------------cC-------HHHHHHHHHHHHHcC
Confidence 6899999999999999999998876 9999987111000 0 00 000123456778889
Q ss_pred cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952 86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 127 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~ 127 (433)
++++.++.+..++.++..+.+.+++++.+|.+++|+|..|..
T Consensus 194 V~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 194 INLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred CEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 999999999999876665566778899999999999998764
No 209
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.43 E-value=1.1e-06 Score=88.20 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=31.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+||||||+|+++|..|++.|++ |+|+|+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~ 42 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERW 42 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 58999999999999999999999988 9999998
No 210
>PRK06753 hypothetical protein; Provisional
Probab=98.43 E-value=3e-06 Score=81.08 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=67.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCC--cc---------ccccCC--CCCCCCCCcccc--cC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPA--LS---------KAYLFP--EGTARLPGFHVC--VG 70 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~--~~ 70 (433)
||+|||||++|+++|..|++.|++ |+|+|+. ........ +. -+++.. ........+... .+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 899999999999999999999998 9999988 21100000 00 000000 000000000000 00
Q ss_pred -----------CCC----CCCCHhHHHh--CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 71 -----------SGG----ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 71 -----------~~~----~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
... ...+...+.+ .+.+++.++.+++++.++. .+++.++.++.+|.||-|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 000 0011222222 2456888999999976555 356678888999999999996543
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.43 E-value=1.6e-06 Score=82.44 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=65.2
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC-CCCCCCCCccccccCCC------------CCCCCCCcccccCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE-VAPYERPALSKAYLFPE------------GTARLPGFHVCVGS 71 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 71 (433)
||+|||||+||+++|..|++. |++ |+++|+. ...-++.. .++... ..+..+........
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 776 9999998 32221111 111100 00111111111100
Q ss_pred C------CC-----CCCHhH-HHhCCcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCc
Q 013952 72 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 125 (433)
Q Consensus 72 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~ 125 (433)
. .+ ..+.+. ++..+..+..+..|..++.+ .|++.+|++++++.||-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0 00 011122 22224446667788888543 46678889999999999999764
No 212
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.43 E-value=5.8e-07 Score=87.55 Aligned_cols=59 Identities=36% Similarity=0.649 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
..+.+.|.+..++.||+++.++ |..+..+++|.+..|.+.+|+++++|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4677888888999999999885 7777776788899999999999999999999998543
No 213
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.43 E-value=3.1e-07 Score=77.40 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=28.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+||||||+||+||++|++.|++ |+++|++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~ 49 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERK 49 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecC
Confidence 58999999999999999999999998 9999999
No 214
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.43 E-value=6e-06 Score=81.47 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.1
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
.+++++++|++|+.++++ ..|++.+|+++.+|.||+|++.
T Consensus 238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence 789999999999874333 4677788888999999999884
No 215
>PRK07588 hypothetical protein; Provisional
Probab=98.43 E-value=1.5e-06 Score=83.81 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=69.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CC-CCCCC-Cc-cc--------cc----cCCC-CCCC-----CC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VA-PYERP-AL-SK--------AY----LFPE-GTAR-----LP 63 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~-~~~~~-~~-~~--------~~----~~~~-~~~~-----~~ 63 (433)
.||+|||||++|+++|..|++.|++ |+|+|+. .. ...+. .+ .. ++ .... .... ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 3899999999999999999999987 9999988 21 10000 00 00 00 0000 0000 00
Q ss_pred C-----ccc-----ccCCCCCC----CCHhHH---HhCCcEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCC
Q 013952 64 G-----FHV-----CVGSGGER----LLPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST 124 (433)
Q Consensus 64 ~-----~~~-----~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~ 124 (433)
+ +.. ..+..... .+...+ ...+++++.++.|..++.++.. |.+++|+++++|.||-|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 000 00000000 011111 1346899999999999876654 566788889999999999976
Q ss_pred ccc
Q 013952 125 VLR 127 (433)
Q Consensus 125 ~~~ 127 (433)
...
T Consensus 158 S~v 160 (391)
T PRK07588 158 SHV 160 (391)
T ss_pred ccc
Confidence 543
No 216
>PRK06847 hypothetical protein; Provisional
Probab=98.43 E-value=4.4e-06 Score=79.99 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=79.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 199 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~------------------------------------------ 199 (433)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999986532100
Q ss_pred ---C----------------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 200 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 200 ---~----------------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
. ....++.+.+.+.+++.|+++++++++.+++.+++ ...+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--GVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EEEEEEcCCCEEEcCEEEECcCC
Confidence 0 00134556677777888999999999999987332 35678888989999999999998
Q ss_pred ccChh
Q 013952 261 RPLIS 265 (433)
Q Consensus 261 ~p~~~ 265 (433)
++...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 77654
No 217
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.42 E-value=6.7e-07 Score=85.89 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=69.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEcCC-CCCCC-----CC-Ccc---------ccccCCC--CCCCCCCccc
Q 013952 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKE-VAPYE-----RP-ALS---------KAYLFPE--GTARLPGFHV 67 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~-~~~~~-----~~-~~~---------~~~~~~~--~~~~~~~~~~ 67 (433)
||+||||||+|+++|..|+++| ++ |+|+|+. ..... +. .+. -++...- ..........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 88 9999998 21111 00 000 0000000 0000000000
Q ss_pred c---------c-----CCCC----------CCCCHhHHHh-CCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEc
Q 013952 68 C---------V-----GSGG----------ERLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 120 (433)
Q Consensus 68 ~---------~-----~~~~----------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlA 120 (433)
. . +... ...+.+.+.+ .+++++.++.++++..+.. ++.+.++.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0 0000 0011122233 4899999999999875544 456677888999999999
Q ss_pred cCCCcc
Q 013952 121 TGSTVL 126 (433)
Q Consensus 121 tG~~~~ 126 (433)
.|....
T Consensus 158 dG~~S~ 163 (382)
T TIGR01984 158 DGANSK 163 (382)
T ss_pred cCCChH
Confidence 997643
No 218
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.42 E-value=1.9e-06 Score=84.46 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=73.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC------C----CCC--CHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------P----RLF--TADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~------~----~~~--~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. + ... ..++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 4899999876531 1 101 12233344566788899999999999
Q ss_pred EEEecCCCcEEEEEe-CCCcEEE--CCEEEEcccCccChh
Q 013952 229 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS 265 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~-~~g~~i~--~d~vi~a~G~~p~~~ 265 (433)
+++. +++...+.. .+++.++ +|.+|+|||.+|+..
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 444334432 2355666 999999999988654
No 219
>PLN02661 Putative thiazole synthesis
Probab=98.42 E-value=9e-07 Score=81.46 Aligned_cols=33 Identities=36% Similarity=0.483 Sum_probs=30.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~ 40 (433)
.+||+|||||++|++||++|++. |++ |+|||+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~ 125 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQS 125 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecC
Confidence 57999999999999999999976 666 9999998
No 220
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.42 E-value=1.6e-06 Score=82.63 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
.+.+.+.+.++.. ++++++|++|..+ +.-..+.+.+|.++.+|.||+++..
T Consensus 216 ~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 216 SLIEALAEKLEAK---IRTGTEVTKIDKK--GAGKTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred HHHHHHHHHhhhc---eeecceeeEEEEc--CCccEEEEcCCceEEcceEEEcCCH
Confidence 4455555555544 8999999999983 3335677888889999999998774
No 221
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.41 E-value=2e-05 Score=77.54 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p 262 (433)
...+.+.+.+.+++.| ++++++++|.+++.++++.. .+.+ .+|+ ++.|+.||+|+|...
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 4677888888888876 89999999999987445432 3333 3453 689999999999754
No 222
>PRK06996 hypothetical protein; Provisional
Probab=98.41 E-value=9.5e-07 Score=85.22 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEcCC-CCC-CC--CCC-c---------cccccCCCCCCCCCCc
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE-VAP-YE--RPA-L---------SKAYLFPEGTARLPGF 65 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~-~~~-~~--~~~-~---------~~~~~~~~~~~~~~~~ 65 (433)
|....+||+||||||+|+++|..|++.|. +..+|+|+|+. ... .. |.. + .-+.+.. ....+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~ 85 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI 85 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence 44557899999999999999999999873 11239999997 211 10 100 0 0000000 00000000
Q ss_pred cc-----------c---cCC----------CCCCCCHhHHHhCCcEEEeCceEEEEECCCCE--EEeCCC---cEEecce
Q 013952 66 HV-----------C---VGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATG---LIFKYQI 116 (433)
Q Consensus 66 ~~-----------~---~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~ 116 (433)
.. . ... .....+.+.+.+.++++..++++..+...... +.+.++ +++++|.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI 165 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence 00 0 000 00112233345578999999998888655554 445543 5899999
Q ss_pred EEEccCC
Q 013952 117 LVIATGS 123 (433)
Q Consensus 117 lvlAtG~ 123 (433)
||-|.|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999994
No 223
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.40 E-value=1.1e-06 Score=85.26 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCcccc-ccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.||...||++||+||+|.|++ .. +|..+. -.+...+.--|+.|++++...
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999974 32 222111 134566777888899888653
No 224
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.40 E-value=3.9e-07 Score=86.43 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+||+|||||++|+++|..|+++|++ |+|+|+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~ 33 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERR 33 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhc
Confidence 7999999999999999999999998 9999998
No 225
>PRK05868 hypothetical protein; Validated
Probab=98.40 E-value=1.6e-06 Score=82.80 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=69.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCC-CCCC-Cc---------cccccCC--CCCCCCCCccc----
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAP-YERP-AL---------SKAYLFP--EGTARLPGFHV---- 67 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~-~~~~-~~---------~~~~~~~--~~~~~~~~~~~---- 67 (433)
+||+|||||++|+++|..|++.|++ |+|+|+. ... .... .+ .-+++.. ...........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 3899999999999999999999988 9999988 211 0000 00 0000000 00000000000
Q ss_pred -----------ccCCC----CC----CCCHhHHH---hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCC
Q 013952 68 -----------CVGSG----GE----RLLPEWYK---EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 123 (433)
Q Consensus 68 -----------~~~~~----~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~ 123 (433)
..+.. .. ..+.+.+. ..+++++.+++++.++.+.. ++++.++.++++|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 00000 00 01112222 35789999999999876554 466788889999999999997
Q ss_pred Ccc
Q 013952 124 TVL 126 (433)
Q Consensus 124 ~~~ 126 (433)
...
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 543
No 226
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=1.1e-06 Score=88.61 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=30.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||||.||++||.++++.|. ..+|+|+||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~ 37 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKT 37 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcC-CCcEEEEecc
Confidence 6899999999999999999998751 1239999998
No 227
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.40 E-value=9.8e-07 Score=85.34 Aligned_cols=60 Identities=23% Similarity=0.182 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccCccC
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRPL 263 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-----~i~~d~vi~a~G~~p~ 263 (433)
.|..+.........++|-+++..++|+++.. +++ +..|+..|.+ ++.++.||.|+|....
T Consensus 162 ddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 162 DDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred chHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3567777788888999999999999999987 344 7888876532 5899999999997643
No 228
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.39 E-value=1e-06 Score=84.64 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=69.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCC-cc---------ccccCCC---CCCCCCCcc
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYE-------RPA-LS---------KAYLFPE---GTARLPGFH 66 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~-~~---------~~~~~~~---~~~~~~~~~ 66 (433)
||+|||||++|+++|..|+++|++ |+|+|+...+.. +.. +. -+++..- .........
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 799999999999999999999987 999999922111 100 00 0000000 000000000
Q ss_pred c---------ccCC-----C----------CCCCCHhHHHhCC-cEEEeCceEEEEECCCCE--EEeCCCcEEecceEEE
Q 013952 67 V---------CVGS-----G----------GERLLPEWYKEKG-IELILSTEIVRADIASKT--LLSATGLIFKYQILVI 119 (433)
Q Consensus 67 ~---------~~~~-----~----------~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvl 119 (433)
. .... . ....+.+.+.+.+ ++++.++.|+.++..+.. +.++++.++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0 0000 0 0011222233455 899999999998766554 5567888899999999
Q ss_pred ccCCCcc
Q 013952 120 ATGSTVL 126 (433)
Q Consensus 120 AtG~~~~ 126 (433)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9997643
No 229
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=1.1e-06 Score=88.74 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=33.6
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g---~~~~~V~lie~~ 40 (433)
|+..++||+|||||.||++||.++++.| .+ |+|+||.
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~ 40 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKT 40 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcc
Confidence 6666789999999999999999999987 55 9999998
No 230
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.38 E-value=2e-06 Score=82.72 Aligned_cols=32 Identities=22% Similarity=0.558 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+||+||||||||++||+.|++.|++ |+|+|+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecC
Confidence 5899999999999999999999998 9999998
No 231
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.36 E-value=2.1e-06 Score=82.18 Aligned_cols=99 Identities=14% Similarity=0.279 Sum_probs=74.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..|++.|.+ |+++++......+ . ++. .....+.+.+++.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~~------~--------~~~-------~~~~~l~~~l~~~ 196 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLAS------L--------MPP-------EVSSRLQHRLTEM 196 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccch------h--------CCH-------HHHHHHHHHHHhC
Confidence 36899999999999999999998876 9999987211100 0 000 0012345677889
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 127 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 127 (433)
+++++.++.+..+..+.. .+.+.+++++++|.+|+|+|..|..
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 999999999999987554 4667788899999999999998753
No 232
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=2e-06 Score=84.42 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=72.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..+++.|.+ |+++++...... .... +....+.+.+++.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~-----------~~d~-----------e~~~~l~~~L~~~ 224 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP-----------GEDE-----------DIAHILREKLEND 224 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc-----------cccH-----------HHHHHHHHHHHHC
Confidence 35899999999999999999998876 999988711110 0000 0012345667788
Q ss_pred CcEEEeCceEEEEECCCCEEEeC-CC--cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++.++..+.+. ++ .++.+|.+++|+|..|...
T Consensus 225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 99999999999998766555442 33 3689999999999988653
No 233
>PRK10262 thioredoxin reductase; Provisional
Probab=98.32 E-value=2e-05 Score=73.78 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CC----CCCCHHHHHHHHHHHHhcCcEEEcCC
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MP----RLFTADIAAFYEGYYANKGIKIIKGT 225 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~---~~--------~~----~~~~~~~~~~l~~~l~~~GV~v~~~~ 225 (433)
+.++++|||+|+.|+.+|..+.+.|.++++++... .+ ++ ....+.+.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46799999999999999999999999998885321 10 01 1123456777788888888888775
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 226 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 226 ~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
.+..++. .+....+...++ .+.+|.||+|+|.+|+.
T Consensus 84 ~v~~v~~--~~~~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDL--QNRPFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEe--cCCeEEEEecCC-EEEECEEEECCCCCCCC
Confidence 5667765 233334544433 78999999999998864
No 234
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.31 E-value=4.1e-05 Score=73.75 Aligned_cols=97 Identities=22% Similarity=0.248 Sum_probs=73.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCCC----------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRLF---------------------- 202 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~~---------------------- 202 (433)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+. +...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999998864321 1000
Q ss_pred ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 203 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 203 ----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
-..+.+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCc
Confidence 013455677788899999999999999988555544333 344468999999999985
No 235
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.31 E-value=2.9e-05 Score=69.83 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
...-...+++.-..-+-++.+++.|..+...++| ..+...+|++-.+|.+|+|+-..
T Consensus 216 ~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~d 272 (447)
T COG2907 216 AGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPD 272 (447)
T ss_pred ccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChH
Confidence 3444555666556656568999999999887788 44666778888999999988743
No 236
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.31 E-value=7.9e-06 Score=76.54 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEcc-CCccCCC------------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYP-EPWCMPR------------------------------------------ 200 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~-~~~~~~~------------------------------------------ 200 (433)
.|+|||+|..|+|+|..+++.|.+|.++.. .+.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 379999999999999999999999999932 2221100
Q ss_pred ----------CCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 201 ----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 201 ----------~~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
..| ..+.+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 001 1345667777776 688887 568999987 678999999999999999999999998
No 237
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.31 E-value=2.6e-06 Score=81.82 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=31.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~ 34 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQ 34 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECC
Confidence 37999999999999999999999998 9999998
No 238
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.31 E-value=1.1e-05 Score=74.14 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---------------CcEEECCEEEEcccCcc
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGGRP 262 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---------------g~~i~~d~vi~a~G~~p 262 (433)
..+..++-+..++.||+++++....++..+++|.+.++-++| |-++.+..-|+|-|-+.
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 456677777889999999999999999888899888888754 23688888888888543
No 239
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=2.8e-06 Score=85.41 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.8
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|-...+||||||+|.||++||.++++.|.+ |+|+||.
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~ 37 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKV 37 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEcc
Confidence 333468999999999999999999999887 9999998
No 240
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.30 E-value=8.4e-06 Score=80.39 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013952 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 259 (433)
Q Consensus 205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G 259 (433)
.+.+.+.+.+++ ++++++++|++|+..+++ ..|.+.+|+.+.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 455666665544 689999999999874333 567788888899999999987
No 241
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.30 E-value=2.4e-05 Score=77.07 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEECCEEEEcccCc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~~~g---~~i~~d~vi~a~G~~ 261 (433)
..-+.+.+.+.+++.|++++++++|++|..++ ++ +++++.+.+| +++.+|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 44456778888899999999999999998633 23 2566667544 569999999999953
No 242
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=73.77 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+|+|||+|++|++||..|++.|++ |+|+||+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg 33 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKG 33 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcC
Confidence 4799999999999999999999998 9999999
No 243
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.30 E-value=3.7e-05 Score=78.01 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~ 260 (433)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 45777888888888999999999999987545778887764 3553 5789999999983
No 244
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.29 E-value=2.9e-05 Score=65.34 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=106.9
Q ss_pred HhcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------C-----------------------------
Q 013952 158 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------F----------------------------- 202 (433)
Q Consensus 158 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------~----------------------------- 202 (433)
.++....|+|+|+|++|+-+|.+|++.|.+|.++++.-.+.... |
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v 105 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYV 105 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEE
Confidence 33356789999999999999999999999999998864332111 1
Q ss_pred --CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hhh
Q 013952 203 --TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LFK 268 (433)
Q Consensus 203 --~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-----------~g~~i~~d~vi~a~G~~p~~~-~~~ 268 (433)
+.++...+....-+.|.+++....|+.+...++.++.++..+ |--.++++.||-|||.....- ++.
T Consensus 106 ~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~ 185 (262)
T COG1635 106 ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLA 185 (262)
T ss_pred ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHH
Confidence 113344444455667899999999999876334367776653 223689999999999765442 221
Q ss_pred -c----cccc-CCCcEEeC--CC-----CCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhccC
Q 013952 269 -G----QVAE-NKGGIETD--DF-----FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 332 (433)
Q Consensus 269 -~----~~~~-~~g~i~vd--~~-----~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 332 (433)
. .... ..+....+ +. -+--.||+|++|=.+..-. |.++--+....=...|+.||+.|+.++
T Consensus 186 kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~L 259 (262)
T COG1635 186 KRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEKL 259 (262)
T ss_pred HhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHHh
Confidence 1 1111 11111111 11 1225899999997664321 222211333333467888888887654
No 245
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=3.3e-06 Score=83.32 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=71.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||++|+.+|..|++.|.+ |+++++..... +.+. ......+.+.+++.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il------------------~~~~----~~~~~~l~~~l~~~ 234 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL------------------PTED----AELSKEVARLLKKL 234 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC------------------CcCC----HHHHHHHHHHHHhc
Confidence 36899999999999999999998876 99999871110 0000 00012345667888
Q ss_pred CcEEEeCceEEEEEC--CCCE-E-EeCCC--cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADI--ASKT-L-LSATG--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~--~~~~-v-~~~~~--~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++. +++. + ...++ +++++|.+++|+|.+|...
T Consensus 235 gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 235 GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 999999999999874 3333 2 23455 3699999999999998653
No 246
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.28 E-value=4.2e-06 Score=80.58 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=31.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++||+||||||+|+++|..|++.|++ |+|+|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcC
Confidence 47999999999999999999999998 9999998
No 247
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=3e-06 Score=83.53 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=72.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||||+.|+.+|..|++.|.+ |+++++...... .. . ......+.+.+++.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--~~----------------~----~~~~~~l~~~l~~~g 227 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRILP--GE----------------D----KEISKLAERALKKRG 227 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcCC--cC----------------C----HHHHHHHHHHHHHcC
Confidence 5899999999999999999998876 999998711110 00 0 000134556778899
Q ss_pred cEEEeCceEEEEECCCCE--EEeCCC---cEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..++.+++. +.+.++ +++++|.+|+|+|.+|...
T Consensus 228 V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 228 IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 999999999999876544 344455 6799999999999988654
No 248
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.27 E-value=5.6e-06 Score=80.85 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=34.7
Q ss_pred CcEEEeCceEEEEECC---------CCEEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
+++++.++++.+++.. .-+|.+.+++++++|.||-|.|......
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 4899999999988631 2356778889999999999999865443
No 249
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.27 E-value=7.3e-06 Score=79.66 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 230 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~----------~~~~~~~l~~~l~~~GV~v~~~~~v~~i 230 (433)
+.++++|||+|+.|+.+|..|...+.+|+++++.+.+.-... ..++...+.+.++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 457999999999999999999776789999998776432111 1233444566677788988754 78999
Q ss_pred EecCCCcEEEEEe--------CCCcEEECCEEEEcccCccChh
Q 013952 231 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 231 ~~~~~g~~~~v~~--------~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
+. +.+...+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 86 443333311 4566899999999999987643
No 250
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=3.5e-06 Score=82.66 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=74.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||+|+.|+..|..|++.|.+ |+++++...+.. . + .......+.+.+++.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~--~-----~---------------~~~~~~~l~~~L~~~ 221 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPLR--G-----F---------------DPDIRETLVEEMEKK 221 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCcc--c-----c---------------CHHHHHHHHHHHHHC
Confidence 36899999999999999999998876 999988711100 0 0 000113455677889
Q ss_pred CcEEEeCceEEEEECCC-C--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIAS-K--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~-~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+.+++.++ . .+.+.+++++.+|.+++|+|..|...
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 99999999999997543 2 45667788899999999999988654
No 251
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=3.3e-06 Score=85.39 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||||.||++||.++++.|.+ |+|+||.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~ 44 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKV 44 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEcc
Confidence 47999999999999999999999887 9999998
No 252
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.27 E-value=3.7e-06 Score=82.03 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=72.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||||+.|+-.|..|++.|.+ |+++++..... +. +. .+......+.+++.|
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~--~~-----~d---------------~~~~~~l~~~l~~~g 203 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN--KL-----MD---------------ADMNQPILDELDKRE 203 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc--hh-----cC---------------HHHHHHHHHHHHhcC
Confidence 5899999999999999999998876 99999871100 00 00 000134566678899
Q ss_pred cEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccc
Q 013952 86 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 127 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~ 127 (433)
++++.++.+..++. ..+++.+++++.+|.+++|+|.+|..
T Consensus 204 I~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 204 IPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred CEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 99999999999863 46777788889999999999998864
No 253
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=2.9e-06 Score=86.13 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=31.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+|.||++||..+++.|.+ |+||||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~ 40 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKS 40 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEecc
Confidence 57999999999999999999999987 9999998
No 254
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.27 E-value=5.3e-06 Score=79.11 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=73.1
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCC-CC---------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952 164 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPR-LF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 230 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~~~~-~~---------~~~~~~~l~~~l~~~GV~v~~~~~v~~i 230 (433)
+++|||+|+.|+.+|..+.+. +.+|+++++.+...-. .+ ..++...+.+.+++.||+++.+ +|.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 5799999887653211 01 1234445567778889999876 78888
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
+. +++ .|.+.+|+++++|.+|+|||.+|+..
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 76 333 57788888899999999999888654
No 255
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.26 E-value=3.1e-05 Score=76.19 Aligned_cols=59 Identities=29% Similarity=0.467 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~g--~~i~~d~vi~a~G~~p 262 (433)
+..+...+.+.+++.|++++++++|.++...+++.. .+. +.+| .++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 578888999999999999999999999987333322 333 2334 3689999999999654
No 256
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.26 E-value=1.5e-05 Score=80.99 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGRP 262 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~---~~g~--~i~~d~vi~a~G~~p 262 (433)
.+..+...+.+.+++.|++++.+++|.++..++ ++++..|.. .+++ ++.+|.||+|+|...
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 367888889999999999999999999998743 466666654 2343 589999999999654
No 257
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.26 E-value=3.7e-06 Score=80.42 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCC
Confidence 5999999999999999999999998 9999976
No 258
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=5e-06 Score=81.95 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=71.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHh
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 83 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (433)
..+++|||+|+.|+..|..|++.|.+ |+++++. ..+.. .. .....+.+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~-----------~~~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DP-----------AVGEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CH-----------HHHHHHHHHHHh
Confidence 36899999999999999999999876 9999765 11100 00 002345667788
Q ss_pred CCcEEEeCceEEEEECCCCEEEe-CCCcEEecceEEEccCCCcccc
Q 013952 84 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 84 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
.|++++.++.+..++.++..+.+ .++.++.+|.+++|+|..|+..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 99999999999999876654332 2344799999999999988754
No 259
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.25 E-value=4e-06 Score=82.08 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=73.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||+|+.|+.+|..+++.|.+ |+++++...... .+. .+....+.+.+++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~------------------~~d----~~~~~~l~~~l~~~ 220 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILR------------------GFD----DDMRALLARNMEGR 220 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCc------------------ccC----HHHHHHHHHHHHHC
Confidence 35799999999999999999998876 999998711110 000 00012345667789
Q ss_pred CcEEEeCceEEEEECCC--CEEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++..+ ..+.+.+++++++|.+++|+|..|...
T Consensus 221 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 99999999999987533 345666778899999999999987643
No 260
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.25 E-value=4.1e-06 Score=87.37 Aligned_cols=97 Identities=27% Similarity=0.445 Sum_probs=73.8
Q ss_pred EEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccC------CCCCC-----HHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952 165 AVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 230 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~~~~~------~~~~~-----~~~~~~l~~~l~~~GV~v~~~~~v~~i 230 (433)
++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.++. +++.....+.+++.||+++++++|.+|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987754 5899998876532 11111 122223356678899999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
+. +. ..|.+.+|+++.+|.+|+|||.+|+..
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 86 33 357788888999999999999988654
No 261
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.24 E-value=7.1e-05 Score=73.29 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccCccC
Q 013952 203 TADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRPL 263 (433)
Q Consensus 203 ~~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~---~~~g~--~i~~d~vi~a~G~~p~ 263 (433)
...+.+.+.+.+. ..|++++++++|..+...+++. +.+. +.+++ ++.+|.||+|.|....
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 4567777877775 4599999999999998742333 3343 34442 6899999999997653
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.23 E-value=8.6e-06 Score=85.08 Aligned_cols=100 Identities=25% Similarity=0.504 Sum_probs=75.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccC------CCCC----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952 162 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 227 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~li~~~~~~~------~~~~----~~~~~~~l~~~l~~~GV~v~~~~~v 227 (433)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+.+. +.++ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 46899998776532 1111 1233333355678899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
.+++. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99976 33 356778888999999999999988654
No 263
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.23 E-value=5e-06 Score=81.92 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=73.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+..|..+++.|.+ |+++++...... .+ ..+....+.+.+++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------------~~----d~~~~~~l~~~l~~~ 229 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLLS------------------FL----DDEISDALSYHLRDS 229 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCC------------------cC----CHHHHHHHHHHHHHc
Confidence 36899999999999999999999877 999998711100 00 000113455667788
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+...+. .+.+.+++++++|.+++|+|.+|...
T Consensus 230 gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred CCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 999999999999875443 34556778899999999999988653
No 264
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.23 E-value=4.6e-06 Score=84.24 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCcEEeCCCCC----CCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~----t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.||..+| |++||+||+|+|++.. .+|..+. -.+...|.-.|++|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 569999999999 9999999999997521 1222111 134566777888888887653
No 265
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=7.6e-06 Score=83.22 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=30.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||||.|||+||.++++.|.+ |+||++.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~ 67 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQ 67 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecC
Confidence 47999999999999999999999987 9999975
No 266
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.22 E-value=7.2e-06 Score=79.05 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=75.3
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..+++.|.+ |+|+++..... |.+. ++..+.+...+++.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL------------------p~~D----~ei~~~~~~~l~~~ 227 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL------------------PGED----PEISKELTKQLEKG 227 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC------------------CcCC----HHHHHHHHHHHHhC
Confidence 45799999999999999999999987 99999991110 1000 01123456667777
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCc--EEecceEEEccCCCccccC
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT 129 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lvlAtG~~~~~~~ 129 (433)
++.++.++.+..+...+. .+.++++. ++++|++++|+|-+|+...
T Consensus 228 gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred CeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 899999999998876654 45666665 6899999999999987653
No 267
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=9.1e-05 Score=74.74 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEECC-EEEEccc-CccChhhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEAD-IVVVGVG-GRPLISLFK 268 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g~--~i~~d-~vi~a~G-~~p~~~~~~ 268 (433)
...+...+.+.+++.|++++++++++++..+++|++.+|.... ++ .+.++ .||+|+| +.-|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 3455666777888999999999999999886678888876643 32 47787 5999888 555666553
No 268
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.22 E-value=2.3e-06 Score=74.08 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=72.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--CCCCH-----------HHH--H--HHHHHHHhcCcEEEcCCe
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 226 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--~~~~~-----------~~~--~--~l~~~l~~~GV~v~~~~~ 226 (433)
+|+|||+|+.|+.+|..|.+.+.++++++..+.... ..... ... + .+.+.+.+.+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999976543110 00000 111 1 334445788999999999
Q ss_pred EEEEEecCCCc-------EEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952 227 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 227 v~~i~~~~~g~-------~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~ 267 (433)
+.++.. ..+. .......++.++.+|.+|+|+|.+|+...+
T Consensus 81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 999987 2331 112234556789999999999988775533
No 269
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.22 E-value=6.9e-06 Score=77.26 Aligned_cols=101 Identities=21% Similarity=0.353 Sum_probs=79.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCCC----------CCHHHHHHHHHHHHhcC-cEEEcCCeEE
Q 013952 162 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 228 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~~----------~~~~~~~~l~~~l~~~G-V~v~~~~~v~ 228 (433)
.+++||+|+|+-|+.++..|.+.- .+|+++++.+..+-.. -+.++...+++.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 579999999999999999999874 8899999987654211 13455667788888666 998866 688
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~ 267 (433)
+|+. +. ..|.++++.++++|.+|+++|..++..-.
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCCC
Confidence 8876 44 35778887789999999999998877543
No 270
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=5.5e-06 Score=83.65 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=31.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+|.|||+||.++++.|.+ |+||||.
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~ 44 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKV 44 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc---EEEEecc
Confidence 57999999999999999999999887 9999997
No 271
>PRK07236 hypothetical protein; Provisional
Probab=98.21 E-value=1.4e-05 Score=76.81 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=73.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----CCHHHHHHHH------------------------
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYE------------------------ 211 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-----~~~~~~~~l~------------------------ 211 (433)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+...... +.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 45789999999999999999999999999999876432210 1222222221
Q ss_pred -------------------HHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 212 -------------------GYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 212 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
+.|.+ .++++++++++++++.++++ ..+.+.+|+++.+|.||.|-|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13568999999999873333 56888999999999999999976654
No 272
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.20 E-value=6.6e-06 Score=81.07 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=71.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||+|+.|+.+|..|++.|.+ |+++++...++.. . .. +....+.+.+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~-------~----d~-----------~~~~~l~~~l~~~g 221 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLLPR-------E----EP-----------EISAAVEEALAEEG 221 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCCCc-------c----CH-----------HHHHHHHHHHHHcC
Confidence 6899999999999999999999876 9999987111100 0 00 00123456677889
Q ss_pred cEEEeCceEEEEECCCC--EEEeC---CCcEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..+..++. .+.+. +++++++|.+++|+|.+|...
T Consensus 222 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 222 IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 99999998998876543 23332 235799999999999988754
No 273
>PRK06370 mercuric reductase; Validated
Probab=98.19 E-value=6.5e-06 Score=81.10 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=71.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..|++.|.+ |+++++....... . .. +....+.+.+++.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~----------~-~~-----------~~~~~l~~~l~~~ 225 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLPR----------E-DE-----------DVAAAVREILERE 225 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCcc----------c-CH-----------HHHHHHHHHHHhC
Confidence 36899999999999999999999876 9999987211100 0 00 0012345667789
Q ss_pred CcEEEeCceEEEEECCCCE--EEe---CCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++.++.. +.+ .++.++++|.+++|+|.+|...
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 9999999999999865432 333 2345799999999999988754
No 274
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.19 E-value=2.5e-05 Score=72.03 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=74.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 200 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------------- 200 (433)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999877432100
Q ss_pred ------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccC
Q 013952 201 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 201 ------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~~i~~d~vi~a~G~~p~ 263 (433)
....++.+.+.+.+++.|++++.+++++++...+++ ..+.+. ++.++++|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcchH
Confidence 011245667788888899999999999998763333 234433 3457999999999997643
No 275
>PLN02661 Putative thiazole synthesis
Probab=98.19 E-value=0.00012 Score=67.64 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=101.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCC----------CC----------------CC----------
Q 013952 161 KNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMP----------RL----------------FT---------- 203 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~----------~~----------------~~---------- 203 (433)
..-.|+|||+|..|+-+|..|++. |.+|+++++...+.. .. ++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 456899999999999999999975 899999987643211 00 00
Q ss_pred -HHHHHHHH-HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEECCEEEEcccCccChh-h
Q 013952 204 -ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--G------RTLEADIVVVGVGGRPLIS-L 266 (433)
Q Consensus 204 -~~~~~~l~-~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~--g------~~i~~d~vi~a~G~~p~~~-~ 266 (433)
..+.+.+. +.+++.||+++.++.+.++.. +++++.++.+. + + ..+.++.||+|||..+... .
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 11122233 344557999999999999876 46677777641 1 1 2689999999999654321 1
Q ss_pred -hh----ccccc-CCC--cEEeC--C-----CCCCCCCCeEEcCccccccccccCcccccccHHHHHHHHHHHHHHHhcc
Q 013952 267 -FK----GQVAE-NKG--GIETD--D-----FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 267 -~~----~~~~~-~~g--~i~vd--~-----~~~t~~~~vfa~Gd~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 331 (433)
.. .++.. -.| ...++ | +-+--+|++|++|=.+..-. |.++--+....=...|+.||+.|+..
T Consensus 250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhc---CCCccCchhHhHHhhhHHHHHHHHHH
Confidence 10 01100 001 11111 1 11114799999997654321 22222233443446789999888876
Q ss_pred CC
Q 013952 332 EG 333 (433)
Q Consensus 332 ~~ 333 (433)
+.
T Consensus 327 l~ 328 (357)
T PLN02661 327 LG 328 (357)
T ss_pred Hc
Confidence 53
No 276
>PLN02487 zeta-carotene desaturase
Probab=98.19 E-value=1.6e-05 Score=79.18 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEECCEEEEcccCc
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~g--~~~~v~~---~~g~~i~~d~vi~a~G~~ 261 (433)
....+.+.+.+.++++|+++++++.|.+|..+. ++ ++.++.+ .+++.+.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688999999999999999999999998742 23 3677777 344579999999999964
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.9e-06 Score=81.88 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=67.4
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-C-CCCCCCCc-----cccccCCC------------CCCCCCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-V-APYERPAL-----SKAYLFPE------------GTARLPG 64 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~-~~~~~~~~-----~~~~~~~~------------~~~~~~~ 64 (433)
+.|||||||||.||..||...++.|.+ ++|+..+ . .....|.+ .|+.+... ....+.-
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~ 79 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQF 79 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCch
Confidence 469999999999999999999999988 7888777 2 11211211 12211111 0000000
Q ss_pred c--ccccCCC---C-----CCCCHhHH-----HhCCcEEEeCceEEEEECCCC----EEEeCCCcEEecceEEEccCCC
Q 013952 65 F--HVCVGSG---G-----ERLLPEWY-----KEKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGST 124 (433)
Q Consensus 65 ~--~~~~~~~---~-----~~~~~~~~-----~~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG~~ 124 (433)
. ....|+- . ...+..++ ...+++++++ .|.++..++. -|.+.+|..+.++.|||+||.-
T Consensus 80 r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 80 RMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0 0000100 0 00111111 1357888886 6666655332 3678899999999999999974
No 278
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.19 E-value=2.5e-05 Score=78.45 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=75.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-----------CCC---CCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-----------MPR---LFTADIAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-----------~~~---~~~~~~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
..|+|||+|+.|+.+|..+++.|.+|+++++...- .+. ....++.+.+++.+++.|++++ +++|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999865310 011 0124677888888889999986 66788
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 229 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 229 ~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
.+.. ++....+.+.++ .+.+|.+|+|||.+|+..
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 444456676666 689999999999887653
No 279
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=8e-06 Score=80.48 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=71.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||||+.|+.+|..|++.|.+ |+|+++...... ... .+....+.+.+++.|
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l~------------------~~d----~~~~~~l~~~l~~~g 227 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRALP------------------NED----AEVSKEIAKQYKKLG 227 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcCC------------------ccC----HHHHHHHHHHHHHCC
Confidence 5899999999999999999999876 999987711110 000 000134566778899
Q ss_pred cEEEeCceEEEEECCCCE--EEeC--CC--cEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..++.++.. +.+. ++ +++++|.+++|+|.+|...
T Consensus 228 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 228 VKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred CEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 999999999999765543 3333 45 4799999999999988653
No 280
>PRK07846 mycothione reductase; Reviewed
Probab=98.18 E-value=9e-06 Score=79.57 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=70.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+.+|..|++.|.+ |+++++...... .. ...+ ...+.+ +.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll~--~~---------d~~~-----------~~~l~~-l~~~ 219 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLLR--HL---------DDDI-----------SERFTE-LASK 219 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcccc--cc---------CHHH-----------HHHHHH-HHhc
Confidence 36899999999999999999998876 999998711110 00 0000 011222 2356
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
+++++.++.+..++.+++ .+.+.+++++++|.+++|+|.+|...
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 899999999999986554 35566788899999999999988654
No 281
>PLN02576 protoporphyrinogen oxidase
Probab=98.18 E-value=7.1e-05 Score=74.54 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.6
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~ 40 (433)
.++||+|||||++||+||++|.+. |++ |+|+|++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~ 45 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEAR 45 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecC
Confidence 357999999999999999999999 887 9999999
No 282
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.17 E-value=6.4e-06 Score=78.02 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--------CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--------~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+... ..+.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 4789999999999999999999999999999987654311 12334444455566777999999988765432
Q ss_pred --cCCCcEEEEEe--CCCcEEECCEEEEcccCc
Q 013952 233 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 --~~~g~~~~v~~--~~g~~i~~d~vi~a~G~~ 261 (433)
..++....... .++..+.+|.+|+|+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 00111111111 112247899999999973
No 283
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.16 E-value=1.4e-05 Score=83.51 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |.+ .+.++.+.-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 46899999999999999999999999999999765431 211 34566666667788899999999876 2322
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
.+.+...+|.||+|||.++.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 12234568999999998753
No 284
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.16 E-value=8.2e-06 Score=79.87 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=73.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..|++.|.+ |+++++...+... +. . .......+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il~~--~d---------~-----------~~~~~~~~~l~~~ 220 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVLRS--FD---------S-----------MISETITEEYEKE 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCCcc--cC---------H-----------HHHHHHHHHHHHc
Confidence 36899999999999999999999877 9999987111100 00 0 0013355667889
Q ss_pred CcEEEeCceEEEEECCC---CEEEeCCC-cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+..+. ..+.+.++ .++.+|.+++|+|..|...
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 99999999999987542 24556666 5799999999999988754
No 285
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.16 E-value=7.6e-06 Score=86.39 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. |. -++.++.+...+.+++.||+|++++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 47999999999999999999999999999999865421 11 1467788888888999999999886542
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc-cC
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL 263 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~-p~ 263 (433)
..+.+.+.....+|.|++|+|.. |+
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 12444444456799999999974 54
No 286
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.16 E-value=9.4e-06 Score=82.33 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=31.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+|.||++||.++++.|.+ |+||||.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~---VilveK~ 82 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFN---TACITKL 82 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCc---EEEEEcC
Confidence 47999999999999999999999987 9999998
No 287
>PLN02463 lycopene beta cyclase
Probab=98.15 E-value=2.9e-05 Score=75.33 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-CCC----------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-~~~---------------------------------------- 201 (433)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998754211 000
Q ss_pred ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 202 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 202 ---~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
...++.+.+.+.+.+.||+++ ..+|.+++..++ ...|.+++|++++||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--KSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eEEEEECCCCEEEcCEEEECcCCCcC
Confidence 011334556666677899997 568999987332 35788889989999999999997654
No 288
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.15 E-value=8.7e-06 Score=80.37 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=71.6
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||+|+.|+.+|..|++.|.+ |+++++...... .. .. +......+.+++.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~--~~---------d~-----------~~~~~~~~~l~~~ 237 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFLA--AA---------DE-----------QVAKEAAKAFTKQ 237 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccCC--cC---------CH-----------HHHHHHHHHHHHc
Confidence 36899999999999999999998876 999998711100 00 00 0012345667788
Q ss_pred CcEEEeCceEEEEECCCCE--EEeCC--C--cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..++.++.. +.+.+ + +++++|.+++|+|..|...
T Consensus 238 gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 9999999999999865543 33333 2 4699999999999988754
No 289
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.14 E-value=8.5e-06 Score=80.04 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+.++.+...+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 46899999999999999999999999999999876542 11 13667888888889999999999987521
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
.+.+.+. .+.+|.||+|||..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 36799999999975
No 290
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.13 E-value=2.8e-05 Score=56.65 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=62.5
Q ss_pred eEEEeecccceEEecCCCC--cEEEEcCCCccccCCcEEEEEEeCCEEEEEEEecCChHHHHHHHHHHHcCCCCCChhhh
Q 013952 345 YFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 422 (433)
Q Consensus 345 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (433)
||||.+++..++.+|...+ +.+..|+.. ...|..+++++|+|+|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 6899999999999997653 456777754 578888899999999999996 678899999999999977 57888
Q ss_pred cccCCCc
Q 013952 423 KNEGLSF 429 (433)
Q Consensus 423 ~~~~~~~ 429 (433)
.++.++.
T Consensus 75 ~d~~~~L 81 (85)
T PF14759_consen 75 ADPSVDL 81 (85)
T ss_dssp HSTTSHH
T ss_pred cCCCCCh
Confidence 8888764
No 291
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.13 E-value=9.2e-05 Score=74.26 Aligned_cols=65 Identities=26% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEC-CEEEEccc-CccChhhh
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLF 267 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~-d~vi~a~G-~~p~~~~~ 267 (433)
....+...+.+.+++.||+++++++++++.. +++++..|... ++. .+.+ +.||+|+| +.-|.++.
T Consensus 215 ~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 215 GGQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred ChHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 3578888899989999999999999999876 46888887543 342 3556 57999999 44454444
No 292
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.13 E-value=4.5e-05 Score=73.50 Aligned_cols=102 Identities=24% Similarity=0.324 Sum_probs=77.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------C-----------------C-C--------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------P-----------------R-L-------- 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------------~-----------------~-~-------- 201 (433)
...|+|||+|+.|+-+|..|++.|.+|+++++.+... + . .
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4589999999999999999999999999998753110 0 0 0
Q ss_pred ----------C---------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952 202 ----------F---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 256 (433)
Q Consensus 202 ----------~---------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~ 256 (433)
+ ...+.+.+.+.+++.|+++++++++++++.++++ ..+++.+|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence 0 0133455666677789999999999999873332 457788888899999999
Q ss_pred cccCccChh
Q 013952 257 GVGGRPLIS 265 (433)
Q Consensus 257 a~G~~p~~~ 265 (433)
|.|..+...
T Consensus 164 AdG~~S~vr 172 (392)
T PRK08773 164 ADGAASTLR 172 (392)
T ss_pred ecCCCchHH
Confidence 999887543
No 293
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.13 E-value=4.5e-05 Score=76.99 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c--EEEC-CEEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R--TLEA-DIVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~--~i~~-d~vi~a~G-~~p~~~~~ 267 (433)
...+...+.+.+++.||+++.++.+.++.. +++++..|...++ + .+.+ +.||+|+| +..|.+++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 667888899999999999999999999876 4678888776543 2 4776 68999999 44444444
No 294
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.12 E-value=1.1e-05 Score=77.95 Aligned_cols=32 Identities=38% Similarity=0.396 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+|+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecC
Confidence 6899999999999999999999987 9999988
No 295
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.12 E-value=3.3e-06 Score=58.62 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=25.8
Q ss_pred EECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 10 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|||||++||++|..|++.|++ |+|+|++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecC
Confidence 899999999999999999876 9999999
No 296
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.11 E-value=1.2e-05 Score=79.23 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=72.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||+|+.|+-.|..|++.|.+ |+++++....... . .. .....+.+.+++.|
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~----------~-d~-----------~~~~~l~~~L~~~g 232 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG----------E-DA-----------DAAEVLEEVFARRG 232 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC----------C-CH-----------HHHHHHHHHHHHCC
Confidence 5899999999999999999998876 9999887111100 0 00 00123456778899
Q ss_pred cEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..++.++. .+.+.+++++++|.+++|+|..|...
T Consensus 233 V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 233 MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 99999999998864433 35556788899999999999988754
No 297
>PRK07538 hypothetical protein; Provisional
Probab=98.11 E-value=1.1e-05 Score=78.29 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~ 32 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAA 32 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcC
Confidence 3899999999999999999999998 9999998
No 298
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.4e-05 Score=67.78 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEccC---------------CccCCCCCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013952 163 GKAVVVGGGYIGLELSAALKINNID-VSMVYPE---------------PWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 226 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~---------------~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~ 226 (433)
-.++|||+|+.|+-+|-++.+.+.+ +.+++.. +.+......+++.+.+++..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4789999999999999999999988 4444332 11111124568888888888999999988 67
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 227 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 227 v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
|.+++. .+....|.+.+++ ++|+.||+|+|..+...
T Consensus 83 v~~v~~--~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVEL--EGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEee--cCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777776 2226788888886 99999999999766543
No 299
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.10 E-value=1.7e-05 Score=80.66 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCcCeEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 013952 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE 40 (433)
Q Consensus 3 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~ 40 (433)
.+++||+||||||+||++|..|++. |.+ |+|||+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~ 65 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERK 65 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcC
Confidence 4578999999999999999999995 988 9999988
No 300
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.10 E-value=4.4e-05 Score=74.13 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=32.7
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
...+..+++|.+++.... ++.+.++.++++|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 455778889999876554 466678889999999999997643
No 301
>PLN02507 glutathione reductase
Probab=98.10 E-value=1.4e-05 Score=79.16 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=73.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..+++.|.+ |+|+++...++. .+ .......+.+.+++.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l~------------------~~----d~~~~~~l~~~l~~~ 257 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPLR------------------GF----DDEMRAVVARNLEGR 257 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcCc------------------cc----CHHHHHHHHHHHHhC
Confidence 35899999999999999999998876 999987721110 00 000012345667889
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+..+++ .+.+.+++++++|.+++|+|.+|...
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 999999999999875433 35566777899999999999988654
No 302
>PRK06834 hypothetical protein; Provisional
Probab=98.10 E-value=6.1e-05 Score=74.39 Aligned_cols=101 Identities=33% Similarity=0.554 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---CCC--CC----------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL--FT---------------------------------- 203 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~---~~~--~~---------------------------------- 203 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999998754211 000 00
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 204 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 204 ----------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
..+.+.+.+.+++.||++++++++++++.++++ ..+++.+|+++.+|.||.|.|.++...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 123345556677789999999999999874333 456777788899999999999877553
No 303
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=1.3e-05 Score=78.87 Aligned_cols=99 Identities=14% Similarity=0.242 Sum_probs=71.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+..|..+++.|.+ |+++++..... +.+. ......+.+.+++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il------------------~~~d----~~~~~~l~~~l~~~ 228 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC------------------PGTD----TETAKTLQKALTKQ 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC------------------CCCC----HHHHHHHHHHHHhc
Confidence 46899999999999999999999876 99998871111 0000 00013345677788
Q ss_pred CcEEEeCceEEEEECCCCE--EEeC---C--CcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKT--LLSA---T--GLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~--v~~~---~--~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+..++.. +.+. + ++++++|.+++|+|..|...
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 9999999999998764333 3322 2 35799999999999988643
No 304
>PRK08244 hypothetical protein; Provisional
Probab=98.09 E-value=4.9e-05 Score=75.54 Aligned_cols=102 Identities=25% Similarity=0.420 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------------------------------- 201 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+...+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 369999999999999999999999999998753211000
Q ss_pred -C--------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccCh
Q 013952 202 -F--------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 202 -~--------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~p~~ 264 (433)
+ ...+.+.+.+.+++.|+++++++++.+++.++++....+...+| +++++|.||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 01344556667778899999999999998744442223333345 479999999999987654
No 305
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.09 E-value=1e-05 Score=82.47 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=33.0
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|-...+||||||||.|||+||.++++.|.+ |+||++.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~ 37 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLV 37 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCC
Confidence 334468999999999999999999999987 9999987
No 306
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.09 E-value=1.5e-05 Score=80.35 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=31.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+|.|||+||.++++.|.+ |+|+||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lleK~ 39 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQS---CALLSKV 39 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEcc
Confidence 57999999999999999999999987 9999998
No 307
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.08 E-value=2.3e-05 Score=77.48 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
|||+|||||+||+.+|..+++.|.+ |+|+++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEecc
Confidence 6999999999999999999999987 9999986
No 308
>PRK07045 putative monooxygenase; Reviewed
Probab=98.08 E-value=7.2e-05 Score=72.01 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--C--C-----------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--F----------------------------------- 202 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--~--~----------------------------------- 202 (433)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... . +
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 347999999999999999999999999999865432100 0 0
Q ss_pred -------------C-------HHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 -------------T-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 -------------~-------~~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
. .++.+.+.+.+. ..|++++++++++.++.++++.+..|.+.+|+++.+|.||-|.|.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 0 022333444443 3589999999999998766665667888899999999999999977
Q ss_pred cChh
Q 013952 262 PLIS 265 (433)
Q Consensus 262 p~~~ 265 (433)
....
T Consensus 165 S~vR 168 (388)
T PRK07045 165 SMIR 168 (388)
T ss_pred hHHH
Confidence 6443
No 309
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.07 E-value=6.8e-05 Score=72.56 Aligned_cols=99 Identities=30% Similarity=0.406 Sum_probs=75.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCC-----------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 200 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~----------------------------------------- 200 (433)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6899999999999999999985 899999875321000
Q ss_pred ----------C---------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952 201 ----------L---------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 255 (433)
Q Consensus 201 ----------~---------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi 255 (433)
. ....+.+.+.+.+++.|++++++++|++++.++ ....+.+.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCEEE
Confidence 0 002345566677778899999999999998633 3356778888899999999
Q ss_pred EcccCccCh
Q 013952 256 VGVGGRPLI 264 (433)
Q Consensus 256 ~a~G~~p~~ 264 (433)
.|.|.++..
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987654
No 310
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.07 E-value=1e-05 Score=79.07 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 46799999999999999999999999999999865431 11 14667777777888999999999975411
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccC
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPL 263 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~-~p~ 263 (433)
.+.+.+. ...+|.||+|+|. +|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1223322 3468999999997 554
No 311
>PLN02815 L-aspartate oxidase
Probab=98.06 E-value=0.00012 Score=73.86 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCC---cEEEEEe---CCCc--EEECCEEEEccc
Q 013952 203 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADG---EVKEVKL---KDGR--TLEADIVVVGVG 259 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g---~~~~v~~---~~g~--~i~~d~vi~a~G 259 (433)
...+...+.+.+++. ||+++.++.+.++..++++ ++.++.. .+|+ .+.++.||+|||
T Consensus 154 G~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 154 GREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 456777777777654 9999999999998764344 2667654 3453 568999999999
No 312
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.06 E-value=6.5e-05 Score=72.51 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------C------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------~------ 201 (433)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999876432100 0
Q ss_pred -------C----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952 202 -------F----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 257 (433)
Q Consensus 202 -------~----------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a 257 (433)
+ ..++.+.+.+.+.+. +|++++++++.++..++++ ..+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence 0 011233444445444 4999999999999863332 4577888888999999999
Q ss_pred ccCccCh
Q 013952 258 VGGRPLI 264 (433)
Q Consensus 258 ~G~~p~~ 264 (433)
.|.....
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9986654
No 313
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=1.2e-05 Score=80.61 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.+|.++||.+||+||+|++++... |..+. -.+...|.-.|++|++++...
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999975432 21111 134556777888888888754
No 314
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.05 E-value=0.00011 Score=68.92 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=35.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERP 47 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~ 47 (433)
+..||||||+|.+||+||++|.+.|++ |+|+|.......|+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~GGR~ 46 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVGGRS 46 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcCcee
Confidence 468999999999999999999999998 99999984444443
No 315
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.05 E-value=2.1e-05 Score=77.02 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=69.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+..|..|++.|.+ |+++++...... . +. ..+ ...+.+ +.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll~--~-----~d----~~~-----------~~~l~~-~~~~ 222 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLLR--H-----LD----EDI-----------SDRFTE-IAKK 222 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCcccc--c-----cC----HHH-----------HHHHHH-HHhc
Confidence 36899999999999999999999876 999998711110 0 00 000 111222 2346
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
+++++.+..+..++.++. .+.+.+++++++|.+++|+|.+|...
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 899999999999886544 34556777899999999999988653
No 316
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.04 E-value=1.5e-05 Score=77.32 Aligned_cols=97 Identities=26% Similarity=0.313 Sum_probs=75.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||+|+.|+.+|..|+++|++ |++++....+..+ .+. + .....+.+.+++.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~------~~~-------~--------~~~~~~~~~l~~~g 192 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ------LLD-------P--------EVAEELAELLEKYG 192 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh------hhh-------H--------HHHHHHHHHHHHCC
Confidence 6899999999999999999999987 9999999211110 000 0 01245677888899
Q ss_pred cEEEeCceEEEEECCCCE-----EEeCCCcEEecceEEEccCCCcc
Q 013952 86 IELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL 126 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lvlAtG~~~~ 126 (433)
++++.+..+..++...+. +...++..+++|.+++++|.+|.
T Consensus 193 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 193 VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 999999999999876653 46677788999999999999885
No 317
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.04 E-value=2.3e-05 Score=77.73 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=71.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||||+.|+-.|..|++.|.+ |+++++. .+.. .+. . .....+.+.+++.|
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~-~~l~--~~d---------~-----------~~~~~l~~~l~~~G 236 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRS-IPLR--GFD---------R-----------QCSEKVVEYMKEQG 236 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcC-cccc--cCC---------H-----------HHHHHHHHHHHHcC
Confidence 5899999999999999999999876 9999765 1110 000 0 00134566778899
Q ss_pred cEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..+...+. .+.+.+++++.+|.+++|+|.+|...
T Consensus 237 V~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 237 TLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred CEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 99999988887764332 45666788899999999999988654
No 318
>PRK12839 hypothetical protein; Provisional
Probab=98.04 E-value=0.0003 Score=70.78 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc-EE-ECCEEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR-TL-EADIVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g~-~i-~~d~vi~a~G-~~p~~~~~ 267 (433)
+..+...+.+.+++.|++++.++.++++..++++++..|... +++ .+ .++.||+|+| +.-|.++.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 556777788888999999999999999976456888887653 343 23 4589999998 44444443
No 319
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.04 E-value=0.0001 Score=73.18 Aligned_cols=137 Identities=24% Similarity=0.283 Sum_probs=86.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------C----------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 202 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------~---------- 202 (433)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+..-. +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 699999999999999999999999999998764321000 0
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-C--cEEECCEEEEcccC--ccChhhh-hcc
Q 013952 203 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-G--RTLEADIVVVGVGG--RPLISLF-KGQ 270 (433)
Q Consensus 203 -~~~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g---~~~~v~~~~-g--~~i~~d~vi~a~G~--~p~~~~~-~~~ 270 (433)
..++.++++...+..++ .+.++++|.+++..++. ....|.+.+ | ++..+|.|++|+|. .|+.... -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 13788889998888877 58999999999874442 245676654 3 24568999999994 5654431 122
Q ss_pred cccCCCcEEeCCCCCC----CCCCeEEcCcccc
Q 013952 271 VAENKGGIETDDFFKT----SADDVYAVGDVAT 299 (433)
Q Consensus 271 ~~~~~g~i~vd~~~~t----~~~~vfa~Gd~~~ 299 (433)
++.=+|.+.=...++. ..++|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3222344443333433 4577888886544
No 320
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.02 E-value=2.1e-05 Score=76.93 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=71.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||+|+.|+-.|..|++.|.+ |+++++......+ . .. .....+.+.+++.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~--~---------~~-----------~~~~~l~~~l~~~ 212 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLPR--E---------DR-----------DIADNIATILRDQ 212 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCC--c---------CH-----------HHHHHHHHHHHhC
Confidence 35899999999999999999998876 9999887111100 0 00 0012345677889
Q ss_pred CcEEEeCceEEEEECCCCEEEeC-CCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+.+++.++..+.+. ++.++.+|.+++|+|.+|...
T Consensus 213 gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 213 GVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 99999999999998655544332 234689999999999988653
No 321
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.02 E-value=2.1e-05 Score=77.46 Aligned_cols=99 Identities=17% Similarity=0.275 Sum_probs=70.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 81 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
..+++|||||+.|+-.|..+... |.+ |+|+++...... .+. .+......+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~------------------~~d----~~~~~~l~~~L 241 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILR------------------GFD----STLRKELTKQL 241 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCcccc------------------ccC----HHHHHHHHHHH
Confidence 36899999999999999766554 655 999998711100 000 00013456677
Q ss_pred HhCCcEEEeCceEEEEECCC---CEEEeCCCcEEecceEEEccCCCcccc
Q 013952 82 KEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 82 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++.|++++.++.+..+.... ..+.+.++.++++|.+++|+|..|...
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 88999999999999887532 246666777899999999999988653
No 322
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.02 E-value=8.1e-05 Score=72.07 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=75.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cCCCC--CC---------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPRL--FT--------------------------- 203 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~----------~~~~~--~~--------------------------- 203 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. ..++. +.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999987641 00000 00
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952 204 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254 (433)
Q Consensus 204 -----------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 254 (433)
..+.+.+.+.+++.|++++.++++.+++.++++ ..|.+.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 022334455566779999999999999874333 4677888888999999
Q ss_pred EEcccCccChh
Q 013952 255 VVGVGGRPLIS 265 (433)
Q Consensus 255 i~a~G~~p~~~ 265 (433)
|.|.|......
T Consensus 161 VgAdG~~S~vR 171 (405)
T PRK05714 161 VAADGANSAVR 171 (405)
T ss_pred EEecCCCchhH
Confidence 99999866543
No 323
>PRK13748 putative mercuric reductase; Provisional
Probab=98.01 E-value=2.5e-05 Score=78.97 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=71.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..|++.|.+ |+++++.. .+ . .. .. .....+.+.+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~-~l-----~-----~~-d~-----------~~~~~l~~~l~~~ 323 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARST-LF-----F-----RE-DP-----------AIGEAVTAAFRAE 323 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCc-cc-----c-----cc-CH-----------HHHHHHHHHHHHC
Confidence 36899999999999999999999876 99998761 00 0 00 00 0013456677889
Q ss_pred CcEEEeCceEEEEECCCCEE--EeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+..++..+ ...+ .++.+|.+++|+|..|+..
T Consensus 324 gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR 368 (561)
T ss_pred CCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence 99999999999887655443 3333 4699999999999988754
No 324
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.00 E-value=2.7e-05 Score=76.87 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=69.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC-CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
.+++|||||+.|+-+|..|++.|.+ |+++++. ..+.. . . .......+.+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~~----d---------~-----------~~~~~l~~~L~~~ 233 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRGF----D---------Q-----------DCANKVGEHMEEH 233 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEeccccccc----C---------H-----------HHHHHHHHHHHHc
Confidence 5799999999999999999999876 9999765 11100 0 0 0012345677889
Q ss_pred CcEEEeCceEEEEECCCC--EEEeCCC---cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.++.+..+...+. .+.+.++ +++++|.+++|+|..|...
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 999999988877765433 3445444 3799999999999988653
No 325
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=2.7e-05 Score=76.94 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=69.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||+|+.|+-.|..|++.|.+ |+++++.. .. .. . . . .....+.+.+++.|
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~-~l-----~~--~---d-~-----------~~~~~l~~~L~~~G 242 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARST-LL-----FR--E---D-P-----------LLGETLTACFEKEG 242 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCC-CC-----Cc--c---h-H-----------HHHHHHHHHHHhCC
Confidence 5899999999999999999998876 99997651 00 00 0 0 0 00123456678899
Q ss_pred cEEEeCceEEEEECCCCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..+...+.. +...+ .++.+|.+++|+|..|+..
T Consensus 243 V~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 243 IEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred CEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 999999999888755443 33333 4699999999999988654
No 326
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.00 E-value=2.3e-05 Score=77.04 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46799999999999999999999999999998776431 11 146677777788899999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
+...+ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
No 327
>PRK12831 putative oxidoreductase; Provisional
Probab=97.98 E-value=2e-05 Score=77.33 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CCC-CCH-HHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTA-DIAAFYEGYYANKGIKIIKGTVAVGFT 231 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~~-~~~-~~~~~l~~~l~~~GV~v~~~~~v~~i~ 231 (433)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 47899999999999999999999999999998755321 111 223 3666677788999999999986521
Q ss_pred ecCCCcEEEEEeCCC-cEEECCEEEEcccC-ccCh
Q 013952 232 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPLI 264 (433)
Q Consensus 232 ~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~-~p~~ 264 (433)
.+.+.+. +.+.+|.||+|+|. +|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222222 24569999999997 4643
No 328
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.98 E-value=0.00011 Score=70.64 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=73.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCC--------CC--------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF-------------------------------- 202 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~--------~~-------------------------------- 202 (433)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+. .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999875322110 00
Q ss_pred -----------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952 203 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 258 (433)
Q Consensus 203 -----------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~ 258 (433)
..++.+.+.+.+++ .|++++++++++++..++++ ..+.+.+|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 01234445555666 49999999999999863333 46777888889999999999
Q ss_pred cCccC
Q 013952 259 GGRPL 263 (433)
Q Consensus 259 G~~p~ 263 (433)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97653
No 329
>PRK06184 hypothetical protein; Provisional
Probab=97.98 E-value=0.0001 Score=73.37 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=73.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------------------------------- 201 (433)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 479999999999999999999999999998753221000
Q ss_pred ----------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013952 202 ----------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 255 (433)
Q Consensus 202 ----------------------~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi 255 (433)
++ ..+.+.+.+.+++.|+++++++++.+++.++++ ..+.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence 00 123345666777789999999999999874444 33444 456789999999
Q ss_pred EcccCccC
Q 013952 256 VGVGGRPL 263 (433)
Q Consensus 256 ~a~G~~p~ 263 (433)
.|.|.+..
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99997653
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=2.9e-05 Score=76.52 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=70.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||+|+.|+..|..|++.|.+ |+++++...... .+. ......+.+.+++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~------------------~~d----~~~~~~~~~~l~~~ 223 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRILP------------------LED----PEVSKQAQKILSKE 223 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcCc------------------chh----HHHHHHHHHHHhhc
Confidence 36899999999999999999999877 999988711110 000 00012345566777
Q ss_pred CcEEEeCceEEEEECCCC-EEEe--C--CCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK-TLLS--A--TGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~-~v~~--~--~~~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..++..++ .+.+ . ++.++++|.+++|+|..|...
T Consensus 224 -I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred -cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 99999999999876543 3432 2 235799999999999988765
No 331
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.97 E-value=2.8e-05 Score=73.05 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=79.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
...|+++|+|..|+-+|..|+..+.+ |++|.++..+..+ ++ +....+...+++++.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~~~------lf---------------~~~i~~~~~~y~e~k 268 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLLPR------LF---------------GPSIGQFYEDYYENK 268 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccchhh------hh---------------hHHHHHHHHHHHHhc
Confidence 45799999999999999999998766 9999999322211 11 112234567888999
Q ss_pred CcEEEeCceEEEEECCC--C--EEEeCCCcEEecceEEEccCCCccccC
Q 013952 85 GIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT 129 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lvlAtG~~~~~~~ 129 (433)
+++++.++.+.+++... + .|.+.++.++.+|.||+.+|++|....
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 99999998888876544 2 467889999999999999999998765
No 332
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.97 E-value=0.00014 Score=70.86 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCC-----C-----------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL-----F----------------- 202 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~-----~----------------- 202 (433)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +.+ .
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 479999999999999999999999999998753210 000 0
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 ---------------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
..++.+.+.+.+++.|++++.+++|.++.. +++.+..+. .++.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 012234566677788999999999999876 345554444 456689999999999974
Q ss_pred c
Q 013952 262 P 262 (433)
Q Consensus 262 p 262 (433)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 3
No 333
>PRK07588 hypothetical protein; Provisional
Probab=97.97 E-value=0.00012 Score=70.59 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 201 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------------------ 201 (433)
+|+|||+|+.|+-+|..|++.|.+|+++++.+......
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998664321100
Q ss_pred --CC-----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 202 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 202 --~~-----------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
++ .++.+.+.+.+ ..|++++++++|.+++..+++ ..+.+.+|+.+++|.||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01222222223 347999999999999873332 468888998899999999999766
Q ss_pred Chh
Q 013952 263 LIS 265 (433)
Q Consensus 263 ~~~ 265 (433)
...
T Consensus 159 ~vR 161 (391)
T PRK07588 159 HVR 161 (391)
T ss_pred cch
Confidence 553
No 334
>PRK05868 hypothetical protein; Validated
Probab=97.96 E-value=8.5e-05 Score=70.94 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----CCH-------------H--------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTA-------------D-------------------- 205 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----~~~-------------~-------------------- 205 (433)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.... +.+ .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 479999999999999999999999999998764321100 000 0
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 206 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 206 ---------------------~~~~l~~~l~---~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
....+.+.+. ..|+++++++++++++.+ +....+.+.+|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD--GDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec--CCeEEEEECCCCeEEeCEEEECCCCC
Confidence 0112223322 358999999999999763 33356888999899999999999977
Q ss_pred cChh
Q 013952 262 PLIS 265 (433)
Q Consensus 262 p~~~ 265 (433)
....
T Consensus 160 S~vR 163 (372)
T PRK05868 160 SNVR 163 (372)
T ss_pred chHH
Confidence 6553
No 335
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.96 E-value=2.9e-05 Score=75.79 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccC--------CCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG 229 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~li~~~~~~~--------~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~ 229 (433)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. +.. ....+...+.+.+++.+|+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 799999999887543 110 1234555667778888999998765421
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 230 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 230 i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
.+.+.+- ...+|.||+|+|..+
T Consensus 105 ----------dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 105 ----------DVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ----------cccHHHH-hhhCCEEEEecCCCC
Confidence 1233332 246999999999865
No 336
>PTZ00058 glutathione reductase; Provisional
Probab=97.96 E-value=3.6e-05 Score=76.81 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..+++.|.+ |+++++..... +.+. .+....+.+.+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il------------------~~~d----~~i~~~l~~~L~~~ 291 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL------------------RKFD----ETIINELENDMKKN 291 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc------------------ccCC----HHHHHHHHHHHHHC
Confidence 46899999999999999999999877 99999871100 0000 00012345667788
Q ss_pred CcEEEeCceEEEEECCCC---EEEeCCC-cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK---TLLSATG-LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~---~v~~~~~-~~~~~d~lvlAtG~~~~~~ 128 (433)
|++++.+..+..++..+. .+...++ +++++|.+++|+|..|...
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 999999999998875432 2333343 5799999999999887643
No 337
>PRK09126 hypothetical protein; Provisional
Probab=97.94 E-value=0.00018 Score=69.37 Aligned_cols=101 Identities=27% Similarity=0.408 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC--------------------C--------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR--------------------L-------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~--------------------~-------------- 201 (433)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 379999999999999999999999999998764310 00 0
Q ss_pred ---------CC---------------HHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952 202 ---------FT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 256 (433)
Q Consensus 202 ---------~~---------------~~~~~~l~~~l-~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~ 256 (433)
++ ..+.+.+.+.+ +..|+++++++++.+++.++++ ..|.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 00 01222233333 3468999999999999863332 467788888999999999
Q ss_pred cccCccChh
Q 013952 257 GVGGRPLIS 265 (433)
Q Consensus 257 a~G~~p~~~ 265 (433)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999876654
No 338
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.93 E-value=3.4e-05 Score=76.17 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||++++++.+..- .
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-~ 220 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-I 220 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-c
Confidence 35799999999999999999999999999998876531 11 135677777778889999999999876411 0
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
.. ++....+|.|++|+|..
T Consensus 221 ---------~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 221 ---------SA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred ---------CH-HHHHhhCCEEEEccCCC
Confidence 00 11235699999999987
No 339
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.91 E-value=1.7e-05 Score=78.84 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCcc
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~--~i~~d~vi~a~G~~p 262 (433)
+..+...+.+..++.|++++.+++|.++.. ++....+.+.+ |+ ++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARR--ENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--eCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 566777777778899999999999999976 23334555543 43 689999999999754
No 340
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.91 E-value=0.00019 Score=69.14 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=74.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC--C-------C-------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L-------F------------------------------- 202 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~--~-------~------------------------------- 202 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+..... . +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999999999999999876442110 0 0
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952 203 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 257 (433)
Q Consensus 203 ------------------------~~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a 257 (433)
...+.+.+.+.+++.| ++++ +++++++...+++ ..+.+.+|.++.+|.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123445556667777 9998 8899998763333 4688888888999999999
Q ss_pred ccCccCh
Q 013952 258 VGGRPLI 264 (433)
Q Consensus 258 ~G~~p~~ 264 (433)
.|.....
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9986543
No 341
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.91 E-value=0.00019 Score=69.02 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=74.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------C--CCC-------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R--LFT------------------------------- 203 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-------~--~~~------------------------------- 203 (433)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999987743100 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013952 204 -------------------------ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 257 (433)
Q Consensus 204 -------------------------~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a 257 (433)
.++.+.+.+.+++.| ++++++++|++++.++ +. ..+.+.+|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DH-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Ce-eEEEECCCCEEEeeEEEEe
Confidence 123344555666667 9999999999998733 32 4678888989999999999
Q ss_pred ccCccCh
Q 013952 258 VGGRPLI 264 (433)
Q Consensus 258 ~G~~p~~ 264 (433)
.|.....
T Consensus 159 dG~~S~v 165 (385)
T TIGR01988 159 DGANSKV 165 (385)
T ss_pred CCCCCHH
Confidence 9976543
No 342
>PLN02697 lycopene epsilon cyclase
Probab=97.91 E-value=0.00017 Score=71.31 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-----------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------------------------------------- 201 (433)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998642221110
Q ss_pred -CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 202 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 202 -~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
....+.+.+.+.+.+.|+++ .+++|+++...+ +....+.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00133455666667789998 577899987633 333334567788899999999999766
No 343
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.91 E-value=3.2e-05 Score=74.70 Aligned_cols=120 Identities=21% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEEEECCCHHHHHHHHHHHhCCCe
Q 013952 108 TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 187 (433)
Q Consensus 108 ~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 187 (433)
.+..+.++.|..+.|........ +++. .+... .+++|+|||+|+.|+.+|..|++.|+.
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~--i~~~-~~~~~------------------tg~~VaviGaGPAGl~~a~~L~~~G~~ 148 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGW--IPGE-LPGSR------------------TGKKVAVIGAGPAGLAAADDLSRAGHD 148 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCC--CCCC-CCCCC------------------CCCEEEEECCCchHhhhHHHHHhCCCe
Confidence 44567888888888765432211 2221 11111 368999999999999999999999999
Q ss_pred EEEEccCCccC-------C-CCCCHHHHHHHHHHHHhcCcEEEcCCeEE-EEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952 188 VSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAV-GFTTNADGEVKEVKLKDGRTLEADIVVVGV 258 (433)
Q Consensus 188 V~li~~~~~~~-------~-~~~~~~~~~~l~~~l~~~GV~v~~~~~v~-~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~ 258 (433)
|+++++.+... | ..++.++.+...+.|++.|++|+.++++- .+. ++. ..-+.|.|++++
T Consensus 149 Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it-----------~~~-L~~e~Dav~l~~ 216 (457)
T COG0493 149 VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT-----------LEE-LLKEYDAVFLAT 216 (457)
T ss_pred EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC-----------HHH-HHHhhCEEEEec
Confidence 99998876532 1 11467899999999999999999998764 221 111 112349999999
Q ss_pred cC
Q 013952 259 GG 260 (433)
Q Consensus 259 G~ 260 (433)
|.
T Consensus 217 G~ 218 (457)
T COG0493 217 GA 218 (457)
T ss_pred cc
Confidence 94
No 344
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.91 E-value=0.00016 Score=70.67 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEECCEEEEccc-CccChhhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 268 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~-~g~~~~v~~~~-g~~i~~d~vi~a~G-~~p~~~~~~ 268 (433)
...+.+.+.+.+++.|++++++++++++..++ ++++..+...+ +..+.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 45678888889999999999999999998743 56677666543 35799999999999 555555543
No 345
>PLN02568 polyamine oxidase
Probab=97.90 E-value=1.3e-05 Score=79.70 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~~g~--~~~~V~lie~~ 40 (433)
||++.+||+|||||++||+||.+|++.|. +..+|+|+|++
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~ 42 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC
Confidence 88888999999999999999999999871 11239999998
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.90 E-value=3.5e-05 Score=80.38 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. -++.++.+...+.+++.||+++.++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46799999999999999999999999999998754321 11 13567777777788999999999875421
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 264 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~-~p~~ 264 (433)
.+.+.+.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 123333334669999999997 4653
No 347
>PRK07190 hypothetical protein; Provisional
Probab=97.90 E-value=0.00018 Score=71.00 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=74.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------CC-
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----------------------------------------~~- 201 (433)
..|+|||+|++|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999886532100 00
Q ss_pred ---------CC------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 202 ---------FT------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 202 ---------~~------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
.. ..+.+.+.+.+++.|++++.+++++++..++++ ..+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 112334555677889999999999999874444 3455677788999999999997
Q ss_pred ccCh
Q 013952 261 RPLI 264 (433)
Q Consensus 261 ~p~~ 264 (433)
+...
T Consensus 164 ~S~v 167 (487)
T PRK07190 164 RSFV 167 (487)
T ss_pred CHHH
Confidence 6533
No 348
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.89 E-value=0.00014 Score=68.88 Aligned_cols=102 Identities=28% Similarity=0.378 Sum_probs=72.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 201 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------------------------------------------ 201 (433)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999998864321100
Q ss_pred --------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECC
Q 013952 202 --------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEAD 252 (433)
Q Consensus 202 --------------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g--~~i~~d 252 (433)
....+.+.+.+.+++.|+++++++++..+..+.++....+... +| +++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0024566777788888999999999999987444433333333 34 368999
Q ss_pred EEEEcccCccChh
Q 013952 253 IVVVGVGGRPLIS 265 (433)
Q Consensus 253 ~vi~a~G~~p~~~ 265 (433)
+||-|-|.+....
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999876543
No 349
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.89 E-value=0.00049 Score=75.04 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=31.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+|.||++||.++++.|.+ |+|+||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~ 441 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKE 441 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEcc
Confidence 58999999999999999999999987 9999999
No 350
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.0004 Score=67.61 Aligned_cols=137 Identities=26% Similarity=0.306 Sum_probs=90.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCC-----------------------CC--------CHHHHHH
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------LF--------TADIAAF 209 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~-V~li~~~~~~~~~-----------------------~~--------~~~~~~~ 209 (433)
-.+|+|||+|++|+-+|..|.+.|.. +.++++.+.+... .+ -.++.+.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 35899999999999999999999988 9998876432100 01 0126777
Q ss_pred HHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccC--ccChhhhhcccccCCCcEEeC--
Q 013952 210 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGIETD-- 281 (433)
Q Consensus 210 l~~~l~~~GV~--v~~~~~v~~i~~~~~g~~~~v~~~~g~~--i~~d~vi~a~G~--~p~~~~~~~~~~~~~g~i~vd-- 281 (433)
+...+++.++. +..++.|..+..++++....|.++++.. +.+|.||+|||. .|+..-+. +.+.-.|.+.=-
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEEchhc
Confidence 78888877654 4556677777776777788999988865 559999999995 44443322 111112222211
Q ss_pred --CCCCCCCCCeEEcCcccc
Q 013952 282 --DFFKTSADDVYAVGDVAT 299 (433)
Q Consensus 282 --~~~~t~~~~vfa~Gd~~~ 299 (433)
+...-.-++|-++|--++
T Consensus 167 ~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCCccccCCCeEEEECCCcc
Confidence 112335678888886554
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.85 E-value=7.8e-05 Score=73.84 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=64.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 240 (433)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 468999999999999999999999999999976532 233445666888999998775432
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013952 241 VKLKDGRTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 241 v~~~~g~~i~~d~vi~a~G~~p~~~~~ 267 (433)
....+|.||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
No 352
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.85 E-value=0.00018 Score=71.54 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=70.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-ccC--C---C--------------CC--------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P---R--------------LF-------------------- 202 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~-~~~--~---~--------------~~-------------------- 202 (433)
-.|+|||+|+.|+++|..+++.|.+|.++++.. .+. + . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999998762 110 0 0 00
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 203 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 203 -------------~~-~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
|. .+...+.+.+++. |++++ ...+.++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 1223444455544 88886 456788765 467788899999999999999999994
No 353
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=6.9e-05 Score=73.85 Aligned_cols=97 Identities=11% Similarity=0.228 Sum_probs=68.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 85 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (433)
.+++|||||+.|+..|..+++.|.+ |+|+++..... +.+. ......+.+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il------------------~~~d----~~~~~~~~~~l~~~- 228 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI------------------PAAD----KDIVKVFTKRIKKQ- 228 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC------------------CcCC----HHHHHHHHHHHhhc-
Confidence 6899999999999999999999987 99999871110 0000 00012334556566
Q ss_pred cEEEeCceEEEEECCCCE--EEeCCC----cEEecceEEEccCCCcccc
Q 013952 86 IELILSTEIVRADIASKT--LLSATG----LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 86 v~~~~~~~v~~i~~~~~~--v~~~~~----~~~~~d~lvlAtG~~~~~~ 128 (433)
++++.++.+..+...+.. +.+.++ .++++|.+++|+|.+|...
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 999999999988754433 333332 4699999999999988754
No 354
>PRK06753 hypothetical protein; Provisional
Probab=97.85 E-value=0.00015 Score=69.42 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----CCHHH---------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI--------------------------------- 206 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----~~~~~--------------------------------- 206 (433)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999998765421100 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013952 207 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 207 ---------------~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
...+.+.|.+ .+.++++++++++++.+ ++ ...+.+.+|+++.+|+||-|-|.+..+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TD-KVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CC-cEEEEECCCCEEecCEEEECCCcchHHH
Confidence 0112223322 24678999999999863 33 2567888898999999999999776554
No 355
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.83 E-value=0.00028 Score=68.58 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----C--CCC--------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----R--LFT-------------------------------- 203 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~----~--~~~-------------------------------- 203 (433)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.... + .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 35799999999999999999999999999987543210 0 000
Q ss_pred -----------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEE
Q 013952 204 -----------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV 256 (433)
Q Consensus 204 -----------------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vi~ 256 (433)
..+.+.+.+.+.+ .||++++++++.+++.++++ ..+++.+ + .++++|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 1122333344444 37999999999999763333 3466653 2 3699999999
Q ss_pred cccCccChh
Q 013952 257 GVGGRPLIS 265 (433)
Q Consensus 257 a~G~~p~~~ 265 (433)
|.|......
T Consensus 176 ADG~~S~vR 184 (415)
T PRK07364 176 ADGARSPIR 184 (415)
T ss_pred eCCCCchhH
Confidence 999876553
No 356
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.83 E-value=0.00039 Score=70.12 Aligned_cols=103 Identities=25% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 200 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------------- 200 (433)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 358999999999999999999999999999876422100
Q ss_pred -----C-------------C-CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEccc
Q 013952 201 -----L-------------F-TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG 259 (433)
Q Consensus 201 -----~-------------~-~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~-~i~~d~vi~a~G 259 (433)
. . ...+.+.+.+.+++ .++++++++++.+++.++++....++..++. ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 0 01222344555555 4799999999999987444433334434554 699999999999
Q ss_pred CccCh
Q 013952 260 GRPLI 264 (433)
Q Consensus 260 ~~p~~ 264 (433)
.+...
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87765
No 357
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.83 E-value=0.0003 Score=67.69 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-------------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 200 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------------- 200 (433)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976432100
Q ss_pred -CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 201 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 201 -~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
.....+.+.+.+.+.+.|++++ ..++..+... ++....|.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0002334556666677799886 5578888762 2444567888888899999999999876
No 358
>PRK08013 oxidoreductase; Provisional
Probab=97.82 E-value=0.00028 Score=68.22 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=74.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------C----CC-----------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------L----FT----------------------------- 203 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------~----~~----------------------------- 203 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+..... . +.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999876431100 0 00
Q ss_pred ---------------------------HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952 204 ---------------------------ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 255 (433)
Q Consensus 204 ---------------------------~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi 255 (433)
..+.+.+.+.+++. ||++++++++.+++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01223344444543 7999999999999774433 56778889899999999
Q ss_pred EcccCccChh
Q 013952 256 VGVGGRPLIS 265 (433)
Q Consensus 256 ~a~G~~p~~~ 265 (433)
-|-|.+....
T Consensus 162 gADG~~S~vR 171 (400)
T PRK08013 162 GADGANSWLR 171 (400)
T ss_pred EeCCCCcHHH
Confidence 9999876553
No 359
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.82 E-value=0.0003 Score=67.27 Aligned_cols=99 Identities=14% Similarity=0.266 Sum_probs=72.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----ccCC--CC--C---------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--RL--F--------------------------------- 202 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~----~~~~--~~--~--------------------------------- 202 (433)
.|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+ +. +
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 68999999999999999999999999998642 1000 00 0
Q ss_pred --------------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 203 --------------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 203 --------------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
..++.+.+.+.+++. ++++++++++.++...+++ ..+.+.++ ++.+|+||-|-|.+
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 013344555555555 4899999999999774433 45777776 89999999999987
Q ss_pred cChh
Q 013952 262 PLIS 265 (433)
Q Consensus 262 p~~~ 265 (433)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 6654
No 360
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.82 E-value=9.5e-05 Score=77.80 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=65.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 233 (433)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+.+..+...+.+++.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 5799999999999999999999999999998765431 11 1345566666677888999998874211
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 234 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 234 ~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
+.+.+.+...+|.||+|+|.++.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11122234568999999998653
No 361
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.82 E-value=0.00037 Score=67.16 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------C--C--
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------P--R-- 200 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------------------------------------~--~-- 200 (433)
...|+|||+|+.|+-+|..|++.|.+|+++++.+... + .
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3479999999999999999999999999998753100 0 0
Q ss_pred ---C------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952 201 ---L------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 255 (433)
Q Consensus 201 ---~------~---------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi 255 (433)
. + ...+.+.+.+.+++. |+++++++++.++...+++ ..|.+.+|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 0 012233444555555 9999999999999763333 56778888899999999
Q ss_pred EcccCccCh
Q 013952 256 VGVGGRPLI 264 (433)
Q Consensus 256 ~a~G~~p~~ 264 (433)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987654
No 362
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=2.1e-05 Score=76.89 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=32.2
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++++|||||||+|||+||+.|.+.|++ |+|+|..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEAR 47 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEAR 47 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEecc
Confidence 367999999999999999999999998 9999998
No 363
>PRK10015 oxidoreductase; Provisional
Probab=97.80 E-value=0.00037 Score=67.82 Aligned_cols=98 Identities=20% Similarity=0.315 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------CCCC-----------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------MPRL----------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~------------------~~~~----------------------- 201 (433)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+ .+.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 37999999999999999999999999999865321 0000
Q ss_pred ----C----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 202 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 202 ----~----------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+ ...+.+.+.+.+++.|++++.+++|+.+.. +++++..+.. ++.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 012233466677888999999999999876 3455555554 34579999999999975
Q ss_pred c
Q 013952 262 P 262 (433)
Q Consensus 262 p 262 (433)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 364
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.80 E-value=6e-05 Score=77.06 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +..++.++.+...+.+++.||++++++.+..-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-- 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc--
Confidence 36899999999999999999999999999999877532 11256777777778889999999999876311
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+.+.+ ....+|.|++|+|..+
T Consensus 387 --------~~~~~-l~~~~DaV~latGa~~ 407 (639)
T PRK12809 387 --------ITFSD-LTSEYDAVFIGVGTYG 407 (639)
T ss_pred --------CCHHH-HHhcCCEEEEeCCCCC
Confidence 11111 1246899999999754
No 365
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.78 E-value=0.00012 Score=70.53 Aligned_cols=130 Identities=11% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEccCCccCC--------CC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMP--------RL-FTADIAAFYEGYYANKGIKIIKGTVAVGF 230 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l-~~~g~~V~li~~~~~~~~--------~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i 230 (433)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+.. .. .-..+.+.+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 567999999998876431 10 1134555666667778888875433311
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCCCCCCeEEcCcccccccc
Q 013952 231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 303 (433)
Q Consensus 231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~ 303 (433)
.+..++ -.-.+|.||+|+|..+....+. -......+.--+.+.+..+++|.+.|...+++.
T Consensus 117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l~ipi~--~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg 177 (506)
T PTZ00188 117 ---------DLKMEE-LRNHYNCVIFCCGASEVSIPIG--QQDEDKAVSGGETNPRKQNGIFHARDLIYFYNN 177 (506)
T ss_pred ---------ccCHHH-HHhcCCEEEEEcCCCCCCCCcc--cccceeeeccccccccccCcEEehheEEEeecC
Confidence 111111 1236899999999775321110 000111111112222236788888887766543
No 366
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.78 E-value=7.1e-05 Score=79.92 Aligned_cols=93 Identities=25% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 233 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 233 (433)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+.++.+...+.+++.||++++++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~---- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK---- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence 5799999999999999999999999999998765431 11 13678888888889999999999965411
Q ss_pred CCCcEEEEEeCCC-cEEECCEEEEcccCc-cCh
Q 013952 234 ADGEVKEVKLKDG-RTLEADIVVVGVGGR-PLI 264 (433)
Q Consensus 234 ~~g~~~~v~~~~g-~~i~~d~vi~a~G~~-p~~ 264 (433)
.+...+- ....+|.||+|||.. |+.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1111111 124589999999974 543
No 367
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.78 E-value=0.00012 Score=68.16 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
..++..+.+.+++.|-++.+.+.|++|.. ++|+..+|.+.||+++.+..|+..++.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCch
Confidence 46788889999999999999999999987 459999999999999999888876654
No 368
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.77 E-value=9.3e-05 Score=72.11 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=60.1
Q ss_pred CeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 186 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 186 ~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
..-.+..+.+..+. +..+.+.+....++.|..++.++.|+++.. .+++..+|++..| .+++..+|-|+|+...
T Consensus 172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHHH
Confidence 34467777776653 667888999999999999999999999987 4555569999998 6999999999998653
No 369
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.75 E-value=7.7e-05 Score=73.54 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+.++.....+.+++.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 35799999999999999999999999999999876542 11 13566667777788999999999986532 10
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
.. +.....+|.||+|+|..
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCC
Confidence 00 11124699999999987
No 370
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.75 E-value=0.0008 Score=57.18 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=70.8
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC------CC-----------------------------
Q 013952 159 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT----------------------------- 203 (433)
Q Consensus 159 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~------~~----------------------------- 203 (433)
+.....++|+|+|++|+-+|..|++.|.+|.++++...+.... |+
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred hhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 3356789999999999999999999999999998764332110 11
Q ss_pred --HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------CC-----cEEECCEEEEcccCccCh
Q 013952 204 --ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------DG-----RTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 204 --~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~------~g-----~~i~~d~vi~a~G~~p~~ 264 (433)
.++...+....-+.|++++....|+.+...+++++.+|..+ .| -.+++..||-|||.....
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 13344444445558999999999999876344788777763 22 379999999999976544
No 371
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.75 E-value=0.00049 Score=66.49 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=70.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 200 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------------------------------------------ 200 (433)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999876431000
Q ss_pred -CC--------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013952 201 -LF--------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 255 (433)
Q Consensus 201 -~~--------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~~i~~d~vi 255 (433)
.. -.++.+.+.+.+.+ .+++++++++++++..++++ ..+++ .+++.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 01223344444444 48999999999999873333 34444 344679999999
Q ss_pred EcccCccCh
Q 013952 256 VGVGGRPLI 264 (433)
Q Consensus 256 ~a~G~~p~~ 264 (433)
-|-|.+...
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999976544
No 372
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.75 E-value=0.00053 Score=66.41 Aligned_cols=101 Identities=21% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC----C--C--CCCH----------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM----P--R--LFTA---------------------------- 204 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~----~--~--~~~~---------------------------- 204 (433)
...|+|||+|+.|+-+|..|++.|.+|+++++. +... + + .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999874 1100 0 0 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013952 205 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 255 (433)
Q Consensus 205 ----------------------------~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi 255 (433)
.+.+.+.+.+.+ .||+++.++++++++.++++ ..|.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 122233333444 47999999999999763333 56888899999999999
Q ss_pred EcccCccCh
Q 013952 256 VGVGGRPLI 264 (433)
Q Consensus 256 ~a~G~~p~~ 264 (433)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976544
No 373
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.74 E-value=0.00014 Score=73.76 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=67.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhH-HHhC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YKEK 84 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 84 (433)
.+++|||||+.|+-.|..+++.|.+ |+++++...... .+. . +........ +++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll~-------~~d----~-----------eis~~l~~~ll~~~ 367 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLLP-------LLD----A-----------DVAKYFERVFLKSK 367 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCcccc-------cCC----H-----------HHHHHHHHHHhhcC
Confidence 5899999999999999999998876 999998711100 000 0 001122333 3568
Q ss_pred CcEEEeCceEEEEECCCC--EEE--eCC-------C--------cEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIASK--TLL--SAT-------G--------LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~--~v~--~~~-------~--------~~~~~d~lvlAtG~~~~~~ 128 (433)
||+++.++.|..+...+. .+. +.+ + +++++|.+++|+|.+|...
T Consensus 368 GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 368 PVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred CcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 999999999999876442 232 211 1 2699999999999998754
No 374
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.73 E-value=9.3e-05 Score=75.75 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-------CCC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~-------~~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .+. ..+.++.+...+.+++.|+++++++.+. +.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 3579999999999999999999999999999987653 111 1466777777788899999999887542 11
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
+.+.+. ...+|.||+|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 111111 2359999999998653
No 375
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.73 E-value=8e-05 Score=70.23 Aligned_cols=85 Identities=27% Similarity=0.449 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeC-----CCcEEECCEEEEcccCccChhhhhccccc--CC
Q 013952 204 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLISLFKGQVAE--NK 275 (433)
Q Consensus 204 ~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~-----~g~~i~~d~vi~a~G~~p~~~~~~~~~~~--~~ 275 (433)
..+.+.+.+.+++. |++++++++|+.|+..++|. +.|... +..++.++.|++..|-..-.-+-..++.. .-
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gy 259 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhccc
Confidence 45666677777666 99999999999999866663 344432 23579999999999976544333556543 33
Q ss_pred CcEEeC-CCCCCCCC
Q 013952 276 GGIETD-DFFKTSAD 289 (433)
Q Consensus 276 g~i~vd-~~~~t~~~ 289 (433)
|+.+|. .++++..|
T Consensus 260 ggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNP 274 (488)
T ss_pred CCCcccceEEecCCH
Confidence 444444 44665443
No 376
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.73 E-value=0.00041 Score=69.75 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----------------------------------C------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------~------ 201 (433)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 458999999999999999999999999999876421100 0
Q ss_pred ----CC-----------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEE
Q 013952 202 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV 255 (433)
Q Consensus 202 ----~~-----------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g--~~i~~d~vi 255 (433)
++ +.+.+.+.+.+.+ .|+++++++++++++.++++ ..+.+. +| .++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 00 1223344445554 49999999999999875444 345554 56 479999999
Q ss_pred EcccCccCh
Q 013952 256 VGVGGRPLI 264 (433)
Q Consensus 256 ~a~G~~p~~ 264 (433)
-|.|.+...
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999976544
No 377
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.72 E-value=0.00047 Score=66.23 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=72.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--cC---C-C----CCCH----------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P-R----LFTA---------------------------- 204 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~--~~---~-~----~~~~---------------------------- 204 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. +. . . .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013952 205 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 256 (433)
Q Consensus 205 ---------------------------~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~ 256 (433)
.+...+.+.+++ .|++++.++++.+++.++++ ..+++.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 011112222322 47999999999999874443 568888999999999999
Q ss_pred cccCccChh
Q 013952 257 GVGGRPLIS 265 (433)
Q Consensus 257 a~G~~p~~~ 265 (433)
|.|..+...
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999877654
No 378
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.71 E-value=0.00013 Score=73.95 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 330 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 330 (433)
..|+|.+|...+|++|++||+|+|++.. +|..+. -.+...+.-.|+.|++++..
T Consensus 369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997543 222211 13445566677777777654
No 379
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.71 E-value=9.6e-05 Score=65.60 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 204 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 204 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
..+...+-+.++..|-++.++-+++.+..+.++ -...|.-..++++++..++-|+|...
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 445556666688899999999999888763332 22344444568899999999999754
No 380
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.70 E-value=0.00012 Score=75.28 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||+++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999998865431 11 14567777777788899999999986521
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+ +...+ ....+|.|++|+|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1236999999999653
No 381
>PLN02546 glutathione reductase
Probab=97.69 E-value=0.00014 Score=72.62 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=68.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+++|||||+.|+-.|..|++.|.+ |+|+++...... .+. ........+.+++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il~------------------~~d----~~~~~~l~~~L~~~ 306 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVLR------------------GFD----EEVRDFVAEQMSLR 306 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEecccccc------------------ccC----HHHHHHHHHHHHHC
Confidence 46899999999999999999998866 999987711100 000 00012345677889
Q ss_pred CcEEEeCceEEEEECC-CCE--EEeCCCcEEecceEEEccCCCcccc
Q 013952 85 GIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 128 (433)
||+++.++.+..+... +.. +...++....+|.+++|+|..|...
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 9999999998888642 232 3334444445899999999988653
No 382
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.68 E-value=0.00072 Score=67.16 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=71.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------CCC--C---------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL--F--------------------- 202 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~------------------~~~--~--------------------- 202 (433)
.|+|||+|..|+++|..+++.|.+|.++++..... ... +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998642110 000 0
Q ss_pred ------------C-HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 203 ------------T-ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 203 ------------~-~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
| ..+...+.+.+++. ++.++.+ .+..+..++++++.+|.+.+|..+.|+.||+|+|...
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0 01223455556665 7888765 5667655336788899999998999999999999763
No 383
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.67 E-value=0.00024 Score=70.41 Aligned_cols=135 Identities=17% Similarity=0.141 Sum_probs=81.7
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 84 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (433)
..+|+|||+|.+|+++|..|+++|++ |+++|..... . .....+.+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~------------------~-----------~~~~~~~l~~~ 63 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDE------------------R-----------HRALAAILEAL 63 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchh------------------h-----------hHHHHHHHHHc
Confidence 35899999999999999999999987 9999876100 0 01234556778
Q ss_pred CcEEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhc-CCC
Q 013952 85 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNG 163 (433)
Q Consensus 85 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~ 163 (433)
|+++..+..+. ....+|.+|+++|..|..|. +......++-.....+- +....... +.+
T Consensus 64 gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~---~~~a~~~gi~v~~~~e~---~~~~~~~~~~~~ 123 (480)
T PRK01438 64 GATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL---LAAAADAGIPVWGEVEL---AWRLRDPDRPAP 123 (480)
T ss_pred CCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH---HHHHHHCCCeecchHHH---HHHhhhccCCCC
Confidence 99988774332 12458999999999887664 22222222222222221 11222110 123
Q ss_pred cEEEECCC---HHHHHHHHHHHhCCCeEEEE
Q 013952 164 KAVVVGGG---YIGLELSAALKINNIDVSMV 191 (433)
Q Consensus 164 ~v~ViG~G---~~g~e~a~~l~~~g~~V~li 191 (433)
.+.|-|+. -+.-.++..|...|.++...
T Consensus 124 ~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 124 WLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 56666642 34456667777777766554
No 384
>PRK06185 hypothetical protein; Provisional
Probab=97.67 E-value=0.00076 Score=65.37 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC----CC-----------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------------- 202 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----~~----------------------------------- 202 (433)
...|+|||+|++|+-+|..|++.|.+|+++++.+..... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 458999999999999999999999999999875321000 00
Q ss_pred ---------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEECCEEEEc
Q 013952 203 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG 257 (433)
Q Consensus 203 ---------------------~~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~--~~~g~-~i~~d~vi~a 257 (433)
...+.+.+.+.+++ .|++++.++++.++.. +++.+..+. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~-~~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE-EGGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 01233444444544 4899999999999986 345444343 34564 7999999999
Q ss_pred ccCccC
Q 013952 258 VGGRPL 263 (433)
Q Consensus 258 ~G~~p~ 263 (433)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 997654
No 385
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.66 E-value=0.00058 Score=73.34 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------CCHHHHHHHHHHHHhc-CcEEEcCCeEEEE
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANK-GIKIIKGTVAVGF 230 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~----------~~~~~~~~l~~~l~~~-GV~v~~~~~v~~i 230 (433)
...|+|||+|+.|+.+|..+++.|.+|++++..+.+.... -..++...+.+.+++. +|+++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4689999999999999999999999999998765432111 1134444555566655 5999999999887
Q ss_pred EecCCCcEEEEEe---------C---CC--cEEECCEEEEcccCccCh
Q 013952 231 TTNADGEVKEVKL---------K---DG--RTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 231 ~~~~~g~~~~v~~---------~---~g--~~i~~d~vi~a~G~~p~~ 264 (433)
.. ++.+..+.. . .+ .++.+|.||+|||.+|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 222221210 0 01 268999999999987754
No 386
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.0012 Score=63.69 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=91.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC----------------------------------------CCC
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----------------------------------------PRL 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~----------------------------------------~~~ 201 (433)
.++++|||+|++|+-.|..|.+.|.+++++++.+.+. +.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 6899999999999999999999999999988764321 000
Q ss_pred -CC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc--cChhhhhcc-
Q 013952 202 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ- 270 (433)
Q Consensus 202 -~~-~~~~~~l~~~l~~~GV--~v~~~~~v~~i~~~~~g~~~~v~~~~g----~~i~~d~vi~a~G~~--p~~~~~~~~- 270 (433)
-+ .++.++|+..+++.++ .+.+++++.++....+ ..+.|.+.++ ++..+|.|++|+|-. |+.......
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 01 1677788888888876 5777888888876322 2466766544 467899999999954 666554332
Q ss_pred cccCCCcEE-eCCCCCC---CCCCeEEcCcccc
Q 013952 271 VAENKGGIE-TDDFFKT---SADDVYAVGDVAT 299 (433)
Q Consensus 271 ~~~~~g~i~-vd~~~~t---~~~~vfa~Gd~~~ 299 (433)
++.=.|.+. .-++-.. ....|.++|--.+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 222223222 2222211 4578888885443
No 387
>PLN02985 squalene monooxygenase
Probab=97.62 E-value=6.7e-05 Score=74.40 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=31.9
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECc
Confidence 468999999999999999999999987 9999998
No 388
>PRK09897 hypothetical protein; Provisional
Probab=97.62 E-value=0.0012 Score=65.43 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCC----------------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR---------------------------------------- 200 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g--~~V~li~~~~~~~~~---------------------------------------- 200 (433)
++|+|||+|+.|+-++..|.+.+ .+|+++++...+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998765 378998875322100
Q ss_pred --------------C-----CCHHHHHH---HHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEE
Q 013952 201 --------------L-----FTADIAAF---YEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV 255 (433)
Q Consensus 201 --------------~-----~~~~~~~~---l~~~l~~~G--V~v~~~~~v~~i~~~~~g~~~~v~~~~-g~~i~~d~vi 255 (433)
+ +...+.+. +.+.+.+.| +.++.+++|+++...+++ ..+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 00011111 222334455 788889999999873333 5677655 4679999999
Q ss_pred EcccCcc
Q 013952 256 VGVGGRP 262 (433)
Q Consensus 256 ~a~G~~p 262 (433)
+|+|..+
T Consensus 160 LAtGh~~ 166 (534)
T PRK09897 160 IATGHVW 166 (534)
T ss_pred ECCCCCC
Confidence 9999644
No 389
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.62 E-value=0.001 Score=64.08 Aligned_cols=100 Identities=30% Similarity=0.328 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------------------------------CC--
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------------------------------RL-- 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------------------------------------~~-- 201 (433)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.... ..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 34799999999999999999999999999987632100 00
Q ss_pred -------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952 202 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 258 (433)
Q Consensus 202 -------~---------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~ 258 (433)
+ ...+.+.+.+.+++. ++. +++++|.+++.++++ ..+++.+|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 012334445555554 466 789999999763333 45778888899999999999
Q ss_pred cCccCh
Q 013952 259 GGRPLI 264 (433)
Q Consensus 259 G~~p~~ 264 (433)
|.....
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 986543
No 390
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.62 E-value=4.9e-05 Score=73.90 Aligned_cols=95 Identities=21% Similarity=0.337 Sum_probs=26.5
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-----------C---------------------------------
Q 013952 165 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-----------R--------------------------------- 200 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~-----------~--------------------------------- 200 (433)
|+|||+|+.|+-+|..+++.|.+|.++++.+.+.. .
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 79999999999999999999999999998754210 0
Q ss_pred ----CCCH-HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEECCEEEEcccC
Q 013952 201 ----LFTA-DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG 260 (433)
Q Consensus 201 ----~~~~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~---g~~i~~d~vi~a~G~ 260 (433)
.+++ .....+.+.+++.||++++++.+.++.. +++++.+|.+.+ ..++.|+.+|-|||.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 0111 1223455667788999999999999987 466888888865 467999999999994
No 391
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.58 E-value=0.0013 Score=63.54 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCcc---CCCC------CC---------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC---MPRL------FT--------------------------- 203 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~---~~~~------~~--------------------------- 203 (433)
.+|+|||+|+.|+-+|..|++. |.+|+++++.... .+.. +.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 9999999983100 0000 00
Q ss_pred ----------------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013952 204 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 254 (433)
Q Consensus 204 ----------------------------~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~v 254 (433)
.++.+.+.+.+++ .|+++++++++.++...+++ ..+.+.+|..+.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0122334444444 58999999999999763332 4577888888999999
Q ss_pred EEcccCccCh
Q 013952 255 VVGVGGRPLI 264 (433)
Q Consensus 255 i~a~G~~p~~ 264 (433)
|.|.|.....
T Consensus 162 I~AdG~~S~v 171 (395)
T PRK05732 162 VAADGSHSAL 171 (395)
T ss_pred EEecCCChhh
Confidence 9999987643
No 392
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00015 Score=67.86 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=30.7
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..|||||||||.||.-||..+++.|.+ -+++..+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeecc
Confidence 368999999999999999999999987 7888877
No 393
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00066 Score=57.38 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=73.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEE--------------------EccCCccCCCCCCHHHHHHHHHHHHhcCcEE
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSM--------------------VYPEPWCMPRLFTADIAAFYEGYYANKGIKI 221 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l--------------------i~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v 221 (433)
..+++|||+|+.+.-.|.++++...+-.+ ++..|.+......+++.+.+++..++.|-++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 35899999999999999998877543333 3344555555567899999999999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 222 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 222 ~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+.. .|.+++. ..+...+.++. +.+.+|.||+|||...
T Consensus 88 ~tE-tVskv~~--sskpF~l~td~-~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLWTDA-RPVTADAVILATGASA 124 (322)
T ss_pred eee-ehhhccc--cCCCeEEEecC-CceeeeeEEEecccce
Confidence 876 4677766 44555666544 4799999999999644
No 394
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.56 E-value=9.3e-05 Score=70.19 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.||+|||||++|+.+|..|++.|++ |+|+|+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEcc
Confidence 5999999999999999999999998 9999976
No 395
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.56 E-value=0.00049 Score=65.49 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=63.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC----C----CCHHHH--------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----L----FTADIA-------------------------- 207 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~----~----~~~~~~-------------------------- 207 (433)
.++|||+|+.|+.+|..|.+. |.+|.++++.+...+. + .++...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 9999999887632210 1 111110
Q ss_pred --------HHHHHH-HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 208 --------AFYEGY-YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 208 --------~~l~~~-l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
..+.+. +++.+..++++++|.++.. ++ +.+.+|+++.+|.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 011122 2222444777888888843 32 55578889999999999997764
No 396
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.55 E-value=0.0012 Score=64.47 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=73.9
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCeEEEEccCC--ccC------------CCC--CC--------------------
Q 013952 164 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PRL--FT-------------------- 203 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~----~g~~V~li~~~~--~~~------------~~~--~~-------------------- 203 (433)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+. +.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999998732 110 000 00
Q ss_pred -----------------------------------HHHHHHHHHHHHhcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013952 204 -----------------------------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE 240 (433)
Q Consensus 204 -----------------------------------~~~~~~l~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~~~~ 240 (433)
..+.+.+.+.+++.+ +++++++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 123344555566654 999999999999741 2233457
Q ss_pred EEeCCCcEEECCEEEEcccCccChh
Q 013952 241 VKLKDGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 241 v~~~~g~~i~~d~vi~a~G~~p~~~ 265 (433)
+.+.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8888999999999999999876554
No 397
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.53 E-value=9.8e-05 Score=69.73 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+||+|||||++|+++|..|++.|.+ |+|+|++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecC
Confidence 5999999999999999999998876 9999997
No 398
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.53 E-value=0.00069 Score=65.81 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=68.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCCC----CCH-------------H--------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------D-------------------- 205 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~~~~~----~~~-------------~-------------------- 205 (433)
+|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.... +.+ .
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999998865431100 000 0
Q ss_pred --------------------H-HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 206 --------------------I-AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 206 --------------------~-~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
+ ...+.+.|.+ ..+.++++++|.+++.++++ ..+.+.+|.++++|.||.|.|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0 0112222221 14567889999999874333 578888998999999999999765
Q ss_pred Ch
Q 013952 263 LI 264 (433)
Q Consensus 263 ~~ 264 (433)
..
T Consensus 160 ~v 161 (414)
T TIGR03219 160 AL 161 (414)
T ss_pred HH
Confidence 43
No 399
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=9.7e-05 Score=74.68 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=39.8
Q ss_pred CCCcEEeCCCCCCCCCCeEEcCccccccccccCcccc-cccHHHHHHHHHHHHHHHhcc
Q 013952 274 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 331 (433)
Q Consensus 274 ~~g~i~vd~~~~t~~~~vfa~Gd~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 331 (433)
..|+|.||.+.+|++|++||+|+|+... +|..+. -.+...+.-.|++|++++...
T Consensus 354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997543 222211 134566777788888877643
No 400
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.52 E-value=0.0014 Score=62.55 Aligned_cols=96 Identities=28% Similarity=0.353 Sum_probs=70.5
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCeEEEEccCCcc--CCCC----C----------------------------------
Q 013952 165 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F---------------------------------- 202 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l--~~~g~~V~li~~~~~~--~~~~----~---------------------------------- 202 (433)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. .... .
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 7889999999876543 1100 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 203 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 203 ----~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
..++.+.+.+.+++.|+ .+.+..|.+|+..++ ...+.+++|+++.|+.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 01344555566664454 567789999987333 45678899999999999999996544
No 401
>PRK02106 choline dehydrogenase; Validated
Probab=97.52 E-value=0.00011 Score=74.23 Aligned_cols=37 Identities=19% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCCcCeEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEcCC
Q 013952 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKE 40 (433)
Q Consensus 1 Mm~~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~ 40 (433)
||...||+||||||.+|+.+|.+|++ .|++ |+|||+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG 38 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAG 38 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCC
Confidence 78888999999999999999999999 6877 9999999
No 402
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.52 E-value=0.0001 Score=74.05 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=32.5
Q ss_pred CCcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 3 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..++||||||+|.|||+||.++++.|.+ |+|||+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~ 36 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQE 36 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCC
Confidence 3578999999999999999999999987 9999998
No 403
>PRK06996 hypothetical protein; Provisional
Probab=97.52 E-value=0.0015 Score=63.17 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCccCCC-------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMPR------------------------------------- 200 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g----~~V~li~~~~~~~~~------------------------------------- 200 (433)
...|+|||+|+.|+-+|..|++.| .+|+++++.+.....
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 458999999999999999999986 479999875311000
Q ss_pred -C-------------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEE
Q 013952 201 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV 256 (433)
Q Consensus 201 -~-------------------~-~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g---~~i~~d~vi~ 256 (433)
. . ...+.+.+.+.+++.|++++.++++.+++.+.++ ..+.+.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 0245667777888889999999999999764444 45666654 5899999999
Q ss_pred cccCc
Q 013952 257 GVGGR 261 (433)
Q Consensus 257 a~G~~ 261 (433)
|-|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99953
No 404
>PTZ00367 squalene epoxidase; Provisional
Probab=97.50 E-value=0.00011 Score=73.49 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=31.7
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+||+|||||++|+++|..|++.|++ |+|+|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~ 65 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERD 65 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEccc
Confidence 358999999999999999999999987 9999987
No 405
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.49 E-value=0.0018 Score=62.39 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--CC----C-----------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L----------------------------------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--~~----~----------------------------------- 201 (433)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999998765310 00 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013952 202 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 202 -----~-------------~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~ 260 (433)
+ ...+.+.+.+...+.|+++++++++.+++.. ++....|++ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence 0 0122334444556789999999999988751 222234555 4563 6899999999997
Q ss_pred ccChh
Q 013952 261 RPLIS 265 (433)
Q Consensus 261 ~p~~~ 265 (433)
+....
T Consensus 162 ~S~vR 166 (392)
T PRK08243 162 HGVSR 166 (392)
T ss_pred CCchh
Confidence 76543
No 406
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.48 E-value=0.00033 Score=70.72 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=66.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-CCCCHHHHHHHHHHHHhcCcEEEcCCeE-EEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 231 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~-~~~~~~~~~~l~~~l~~~GV~v~~~~~v-~~i~ 231 (433)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+. + ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 57899999999999999999999999999998765431 1 1135566666666778899999988765 3222
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013952 232 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 263 (433)
Q Consensus 232 ~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~ 263 (433)
. +. + ...+|.||+|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 1 1248999999997643
No 407
>PLN02268 probable polyamine oxidase
Probab=97.46 E-value=0.00013 Score=71.42 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.2
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 218 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 218 GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
+++++++++|++|...+++ ..|++.+|+++.+|.||+|+..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence 6789999999999874444 5688888888999999999864
No 408
>PRK13984 putative oxidoreductase; Provisional
Probab=97.43 E-value=0.00044 Score=70.56 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------CC-CCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~-------~~-~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
++++++|||+|+.|+.+|..|.+.|.+|+++++.+... +. ..+.++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 47889999999999999999999999999998765431 11 134566666667889999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+...+ ....+|.||+|+|..
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcC
Confidence 11111 135799999999975
No 409
>PRK11445 putative oxidoreductase; Provisional
Probab=97.43 E-value=0.0031 Score=59.76 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=67.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CCCCCH-------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 204 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--------~~~~~~------------------------------- 204 (433)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999998 9999998765210 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccC
Q 013952 205 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL 263 (433)
Q Consensus 205 ------------------~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~-~~g~--~i~~d~vi~a~G~~p~ 263 (433)
++.+.+.+ ..+.||++++++.+.++...+++ ..+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 11112222 23568999999999999874443 34554 4564 6899999999997654
Q ss_pred h
Q 013952 264 I 264 (433)
Q Consensus 264 ~ 264 (433)
.
T Consensus 159 v 159 (351)
T PRK11445 159 V 159 (351)
T ss_pred H
Confidence 4
No 410
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.42 E-value=0.00016 Score=72.95 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=31.7
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+..+|+|||||++||++|..|++.|++ |+|+|+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~ 113 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKD 113 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEecc
Confidence 357999999999999999999999988 9999987
No 411
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.42 E-value=0.0024 Score=61.48 Aligned_cols=98 Identities=19% Similarity=0.366 Sum_probs=67.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC--------------------------------CC----------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM--------------------------------PR---------- 200 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~--------------------------------~~---------- 200 (433)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 2100 00
Q ss_pred ---C---CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEECCEEEEcccCccCh
Q 013952 201 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 201 ---~---~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~------g--~~i~~d~vi~a~G~~p~~ 264 (433)
+ .+ ..+.+.+.+.+.+.|++++.. .++++..++++ ..+.+.+ + .++.+|.||.|.|.+...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 00 123345566667789999765 58888763332 3455442 2 479999999999976543
No 412
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.39 E-value=0.00035 Score=63.80 Aligned_cols=97 Identities=13% Similarity=0.236 Sum_probs=73.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--CCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--VAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
..+.+|||||..||-.+--..+.|-+ ||++|-. ..+...+ +..+.+...+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~mD~------------------------Eisk~~qr~L~ 263 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGVMDG------------------------EISKAFQRVLQ 263 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccccCH------------------------HHHHHHHHHHH
Confidence 46899999999999998888898876 9999987 1111101 11245677888
Q ss_pred hCCcEEEeCceEEEEECCCC-E--EEeC---CC--cEEecceEEEccCCCcccc
Q 013952 83 EKGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL 128 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lvlAtG~~~~~~ 128 (433)
+.++.|.+++.|...++... . |.+. ++ +++++|.|++++|-+|+..
T Consensus 264 kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 264 KQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred hcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 89999999999999887665 3 3332 22 4799999999999998743
No 413
>PRK07538 hypothetical protein; Provisional
Probab=97.38 E-value=0.0024 Score=61.95 Aligned_cols=99 Identities=25% Similarity=0.343 Sum_probs=67.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC-----------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------------------------------------- 202 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~----------------------------------------- 202 (433)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+...
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 689999999999999999999999999987643211000
Q ss_pred -------------------CHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCC-----CcEEECCEEEE
Q 013952 203 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVV 256 (433)
Q Consensus 203 -------------------~~~~~~~l~~~l~~-~G-V~v~~~~~v~~i~~~~~g~~~~v~~~~-----g~~i~~d~vi~ 256 (433)
-.++.+.+.+.+.+ .| +.+++++++++++.++++.+ +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00122233344433 35 57999999999987555533 33332 24899999999
Q ss_pred cccCccCh
Q 013952 257 GVGGRPLI 264 (433)
Q Consensus 257 a~G~~p~~ 264 (433)
|-|.+...
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99976544
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0014 Score=59.19 Aligned_cols=136 Identities=20% Similarity=0.226 Sum_probs=94.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc-cC-Ccc-----------CCCCCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-PE-PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVA 227 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~-~~-~~~-----------~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v 227 (433)
.+-.|+|||+|+.|...|-+.++.|.+.-++. |. ... .+....+++...+++..++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 46689999999999999999999887654432 11 011 112246889999999999999999998888
Q ss_pred EEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhcccccCCCcEEeCCCCCC---CCCCeEEcCc
Q 013952 228 VGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT---SADDVYAVGD 296 (433)
Q Consensus 228 ~~i~~~-~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t---~~~~vfa~Gd 296 (433)
+++++. ..+....|++.+|..+++..+|++||.+=+.--.+..-+..+.++.--+||.- .-++|-++|-
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGG 362 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGG 362 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECC
Confidence 888762 23556789999999999999999999542211112222233455665566654 3456666653
No 415
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.37 E-value=0.0013 Score=58.70 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEE
Q 013952 185 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIV 254 (433)
Q Consensus 185 g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~------GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g--~~i~~d~v 254 (433)
|..|---+|....+|. ..++...+...+++. -+++.++++|..|.. .+|++..|+.-| | ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 4555555677776664 455666665555442 488999999999986 688888887743 3 35889999
Q ss_pred EEcccC
Q 013952 255 VVGVGG 260 (433)
Q Consensus 255 i~a~G~ 260 (433)
|+|+|-
T Consensus 199 VlatGG 204 (477)
T KOG2404|consen 199 VLATGG 204 (477)
T ss_pred EEecCC
Confidence 999994
No 416
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.36 E-value=0.0036 Score=51.61 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=31.6
Q ss_pred CcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 218 GIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 218 GV~v~-~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
||++. ...+|..+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 54443 34588888874444 5788899999999999999995
No 417
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.36 E-value=0.00061 Score=65.10 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 197 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~ 197 (433)
+|+|||+|..|+++|..|++.|.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999876654
No 418
>PRK06126 hypothetical protein; Provisional
Probab=97.34 E-value=0.0029 Score=63.83 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC-----------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 200 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~----------------------------------------- 200 (433)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 458999999999999999999999999999865321000
Q ss_pred -------------C----------------------CC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013952 201 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL 243 (433)
Q Consensus 201 -------------~----------------------~~-~~~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~ 243 (433)
. .+ ..+.+.+.+.+++ .++++++++++.+++.++++ + .+.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-V-TATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-E-EEEE
Confidence 0 00 0123334444443 58999999999999874433 2 2333
Q ss_pred ---CCCc--EEECCEEEEcccCccC
Q 013952 244 ---KDGR--TLEADIVVVGVGGRPL 263 (433)
Q Consensus 244 ---~~g~--~i~~d~vi~a~G~~p~ 263 (433)
.+|+ ++.+|.||.|.|.+..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchH
Confidence 3453 6899999999997543
No 419
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.34 E-value=0.00026 Score=66.62 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.3
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
...+|||||||.|||+||.+|.++|..+ ++|+|.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEAS 54 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEec
Confidence 3578999999999999999999888664 9999988
No 420
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00024 Score=68.00 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++|+|+|||.|||+||++|+++|++ |+|+|.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEAR 32 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEecc
Confidence 3799999999999999999999998 9999999
No 421
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.32 E-value=0.0002 Score=66.15 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEECCEEEEcccCccChhhh
Q 013952 205 DIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 205 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~~~--g~----~i~~d~vi~a~G~~p~~~~~ 267 (433)
.....+...+++.+++++++++|.+|..+ ++++++.|++.+ +. .+.++.||+|.|.--...++
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 34556666666669999999999999552 466777777643 33 56789999999965444444
No 422
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.30 E-value=0.00026 Score=70.57 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=30.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||||||+| +|++||.++++.|.+ |+|||+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~ 38 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEAT 38 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecC
Confidence 5799999999 999999999999987 9999998
No 423
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.30 E-value=0.0035 Score=60.30 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=69.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--CC----CCC---------------------------------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT--------------------------------- 203 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~--~~----~~~--------------------------------- 203 (433)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999998765310 00 000
Q ss_pred --------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013952 204 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG 260 (433)
Q Consensus 204 --------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d~vi~a~G~ 260 (433)
..+...+.+.+.+.|+.++++.++..+... ++....|.+. +|+ ++++|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 122234445556678888888887776531 2222356664 664 6899999999997
Q ss_pred ccCh
Q 013952 261 RPLI 264 (433)
Q Consensus 261 ~p~~ 264 (433)
+...
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 6644
No 424
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.30 E-value=0.00062 Score=70.83 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~ 194 (433)
.+++|+|||+|+.|+.+|..|++.|.+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999864
No 425
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0007 Score=69.78 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------CCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 232 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 232 (433)
.+++|.|||+|+.|+-+|..|.+.|..|++.+|.++... .-+|+.+.++-.+++.+.||+|.+|++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999887421 1157788888889999999999999765321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013952 233 NADGEVKEVKLKDGRTLEADIVVVGVGGR 261 (433)
Q Consensus 233 ~~~g~~~~v~~~~g~~i~~d~vi~a~G~~ 261 (433)
+. -|+-.-+.|.+|+|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 122234578999999953
No 426
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.25 E-value=0.006 Score=58.85 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=66.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---CC---------------------------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL--------------------------------------- 201 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---~~--------------------------------------- 201 (433)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999987532100 00
Q ss_pred --------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEECCEEEEcccCcc
Q 013952 202 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP 262 (433)
Q Consensus 202 --------~~-~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~g~~~~v~~--~~-----g--~~i~~d~vi~a~G~~p 262 (433)
++ ..+.+.+.+.+.+.|++++.++ +..+... ..+....|++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1222345556677899998775 6666421 1222234442 21 2 4799999999999766
Q ss_pred Ch
Q 013952 263 LI 264 (433)
Q Consensus 263 ~~ 264 (433)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 44
No 427
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.21 E-value=0.0024 Score=63.60 Aligned_cols=102 Identities=24% Similarity=0.412 Sum_probs=76.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCcc------CCCCC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013952 162 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWC------MPRLF-----TADIAAFYEGYYANKGIKIIKGTVA 227 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~---g~~V~li~~~~~~------~~~~~-----~~~~~~~l~~~l~~~GV~v~~~~~v 227 (433)
.++++|||.|..|..+...+.+. -..+|++...++. +.+.+ -+++.-.-.+.++++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999888888773 3578887654432 11111 1234444466789999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013952 228 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 228 ~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~~~~ 267 (433)
..|.. +. ..|.+++|.++.+|.+|+|||+.|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99976 44 46888999999999999999999876543
No 428
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.20 E-value=0.0028 Score=60.74 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCccC--CCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEe-CC
Q 013952 172 YIGLELSAALKINNIDVSMVYPEPWCM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKL-KD 245 (433)
Q Consensus 172 ~~g~e~a~~l~~~g~~V~li~~~~~~~--~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g---~~~~v~~-~~ 245 (433)
.+++|+-++|.+.=..+.-+..-..+. +-..-+.+..-+.+.|+++||+|+++++|+.+.-+.++ .+..+.+ .+
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~ 252 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD 252 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC
Confidence 367788888776522221111111110 00124678888999999999999999999999763222 2334443 34
Q ss_pred Cc--EE---ECCEEEEcccC
Q 013952 246 GR--TL---EADIVVVGVGG 260 (433)
Q Consensus 246 g~--~i---~~d~vi~a~G~ 260 (433)
|+ .+ +-|+|++..|.
T Consensus 253 g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 253 GKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred CCeeEEEeCCCCEEEEECCc
Confidence 42 22 35888888885
No 429
>PLN02676 polyamine oxidase
Probab=97.20 E-value=0.00045 Score=68.20 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=34.2
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013952 219 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 219 V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
.+++++++|++|..++++ +.|.+.+|+++.||.||++++.
T Consensus 245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccCh
Confidence 679999999999885444 5788889989999999999883
No 430
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.18 E-value=0.0084 Score=55.76 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=75.9
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------CCCCccccccCCCCCCCCC-------------
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY--------ERPALSKAYLFPEGTARLP------------- 63 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------~~~~~~~~~~~~~~~~~~~------------- 63 (433)
.+||+|||||||||+||..++++|.+ |+|||+...+- .||.+...........+.|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 68999999999999999999999988 99999982111 1222111110000001111
Q ss_pred ------------CcccccC--C----------CCCCCCHhHHHhCCcEEEeCceEEEEECCC--CEEEeCCCcEEecceE
Q 013952 64 ------------GFHVCVG--S----------GGERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQIL 117 (433)
Q Consensus 64 ------------~~~~~~~--~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~l 117 (433)
+...... . +..+.+...+++.||+++..++|.+++.++ ..+.+.+++++.+|.+
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 0000000 0 011223445567899999999999999875 4677888889999999
Q ss_pred EEccCC
Q 013952 118 VIATGS 123 (433)
Q Consensus 118 vlAtG~ 123 (433)
|+|||.
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999994
No 431
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.17 E-value=0.003 Score=55.27 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=65.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC-------------------CCHHHHHHHHHH-----------
Q 013952 164 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADIAAFYEGY----------- 213 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~-------------------~~~~~~~~l~~~----------- 213 (433)
+++|||+|..|+.+|..|...|.+|++++++.....+. -++.+.+.++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999999999998763321110 011122111111
Q ss_pred ------------------------------HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCc
Q 013952 214 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 261 (433)
Q Consensus 214 ------------------------------l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~d~vi~a~G~~ 261 (433)
+-.-..++.++++|+++... +....+.+++| +...+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence 11123567788888888773 45578888655 568999999998853
No 432
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.17 E-value=0.00071 Score=62.87 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=39.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC--CCCCCCC-CccccccCCCCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--VAPYERP-ALSKAYLFPEGTA 60 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~--~~~~~~~-~~~~~~~~~~~~~ 60 (433)
.++|+|+|||.+||++|++|++++. +..|+|+|+. ...|-+. ....++++...+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPr 68 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVGGWIRSDRMQNGFIFEEGPR 68 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcccceeeeccCCCceeeccCCC
Confidence 4799999999999999999999875 5568889998 3444333 3344444444443
No 433
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.09 E-value=0.0006 Score=68.59 Aligned_cols=64 Identities=20% Similarity=0.172 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhh
Q 013952 203 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLF 267 (433)
Q Consensus 203 ~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-~g~--~i~~d-~vi~a~G-~~p~~~~~ 267 (433)
...+...+.+.+++.|+++++++++.++.. +++++.+|... +|+ .+.++ .||+|+| +.-|.++.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 567777788888888999999999999876 46777777653 332 46774 6888888 44444443
No 434
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.09 E-value=0.0065 Score=59.88 Aligned_cols=97 Identities=27% Similarity=0.371 Sum_probs=67.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------C----------------C-----------
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------L----------- 201 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~--------------~----------------~----------- 201 (433)
..|+|||+|..|+-+|..+++.|.+|.+++..+.... . .
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999876421100 0 0
Q ss_pred ------------------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013952 202 ------------------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 245 (433)
Q Consensus 202 ------------------------------------~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~ 245 (433)
....+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 00123444555566678888765 6777764 4566666666 4
Q ss_pred CcEEECCEEEEcccCcc
Q 013952 246 GRTLEADIVVVGVGGRP 262 (433)
Q Consensus 246 g~~i~~d~vi~a~G~~p 262 (433)
+..+.++.||+|||...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 56799999999999543
No 435
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.07 E-value=0.0036 Score=58.33 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCC----------CHHHHHHHHHHHHhc--CcEEEcCCeEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK--GIKIIKGTVAV 228 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~----------~~~~~~~l~~~l~~~--GV~v~~~~~v~ 228 (433)
+.++|+|+|+|..|+-+...|-..-.+|+++.+.+.++-..+ -..+.+-+....+.. +++++.. .-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence 468999999999999999999888899999999877542111 245666666666554 5555533 445
Q ss_pred EEEecCCCcEEEE--EeCCC----cEEECCEEEEcccCccChhhh
Q 013952 229 GFTTNADGEVKEV--KLKDG----RTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 229 ~i~~~~~g~~~~v--~~~~g----~~i~~d~vi~a~G~~p~~~~~ 267 (433)
.+++ +.+.+.+ .+.++ ..+.+|.+|+|+|..|++.-+
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 5654 4433333 23344 468999999999999887643
No 436
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.07 E-value=0.013 Score=59.52 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
+..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56799999999999999999999999999998864
No 437
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.04 E-value=0.0017 Score=61.41 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCC------CCCHH------HHHHHHHHHHhcCcEEEcCCeEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTAD------IAAFYEGYYANKGIKIIKGTVAV 228 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~------~~~~~------~~~~l~~~l~~~GV~v~~~~~v~ 228 (433)
-.++++|||||..|+++|..|++.|.+|++++..+.+..+ .|+.. +...+.+......|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 3579999999999999999999999999999988765432 12221 23344455566789999999999
Q ss_pred EEEec
Q 013952 229 GFTTN 233 (433)
Q Consensus 229 ~i~~~ 233 (433)
++++.
T Consensus 203 ev~G~ 207 (622)
T COG1148 203 EVSGS 207 (622)
T ss_pred eeccc
Confidence 98763
No 438
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.04 E-value=0.00073 Score=64.59 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
||+|||||++|+.+|..|++.|++ |+|+|+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP---VILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc---EEEEecc
Confidence 799999999999999999999998 9999976
No 439
>PLN02985 squalene monooxygenase
Probab=97.02 E-value=0.01 Score=59.02 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=67.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCC----------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------------- 201 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~---------------------------------------- 201 (433)
...|+|||+|..|+-+|..|++.|.+|+++++.+......
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4589999999999999999999999999998753110000
Q ss_pred -----C-----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEE
Q 013952 202 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIV 254 (433)
Q Consensus 202 -----~-----------------~~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~~g~~~~v~~--~~g~--~i~~d~v 254 (433)
+ ..++.+.+.+.+++. +|+++.+ ++.++.. +++.+.+|++ .+|+ ++.+|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 0 012334455555444 6888866 4555544 3454445554 4564 3679999
Q ss_pred EEcccCccChh
Q 013952 255 VVGVGGRPLIS 265 (433)
Q Consensus 255 i~a~G~~p~~~ 265 (433)
|.|.|......
T Consensus 201 VgADG~~S~vR 211 (514)
T PLN02985 201 VVCDGCYSNLR 211 (514)
T ss_pred EECCCCchHHH
Confidence 99999766553
No 440
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.01 E-value=0.00071 Score=70.70 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.1
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEcCC
Q 013952 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKE 40 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~ 40 (433)
+|+||||||||+++|..|++. |++ |+|+|+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~ 34 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERN 34 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecC
Confidence 799999999999999999998 666 9999998
No 441
>PLN02529 lysine-specific histone demethylase 1
Probab=97.01 E-value=0.00083 Score=68.80 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.+||+|||||++||+||+.|++.|++ |+|+|+.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~ 192 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGR 192 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecC
Confidence 57999999999999999999999997 9999998
No 442
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.00 E-value=0.014 Score=57.10 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---CC----------CC-------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------FT------------------------- 203 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~---~~----------~~------------------------- 203 (433)
.-.|+|||+|+.|.-+|..|++.|.+|.++++.+.... .. ++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 35899999999999999999999999999987632100 00 00
Q ss_pred -------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEECCEEEEcccC
Q 013952 204 -------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG 260 (433)
Q Consensus 204 -------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-g~~~~v~~~~-------g--~~i~~d~vi~a~G~ 260 (433)
..+.+.+.+..++.|++++.+ .+.++....+ +....+.+.+ | .++.+|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 012334555667789999865 4667653111 1222344321 2 47999999999997
Q ss_pred ccCh
Q 013952 261 RPLI 264 (433)
Q Consensus 261 ~p~~ 264 (433)
....
T Consensus 198 ~S~v 201 (450)
T PLN00093 198 NSRV 201 (450)
T ss_pred chHH
Confidence 6543
No 443
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.0022 Score=61.72 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=66.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---CC---------------------------------------C
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---MP---------------------------------------R 200 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~---~~---------------------------------------~ 200 (433)
-.|+|||+|..|+|+|.+.++.|.++.+++....- ++ .
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 47899999999999999999999998887643110 00 0
Q ss_pred C-----------CCH-HHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCC-cEEEEEeCCCcEEECCEEEEcccC
Q 013952 201 L-----------FTA-DIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGG 260 (433)
Q Consensus 201 ~-----------~~~-~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~~~g-~~~~v~~~~g~~i~~d~vi~a~G~ 260 (433)
. .|. ...+.+++.++ ..++.++.+ .|.++.. +++ ++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0 000 12334444444 346666654 4566654 344 589999999999999999999995
No 444
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.98 E-value=0.00088 Score=61.33 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.9
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+||||||||.+|-+.|+.|++.|.+ |.|||++
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEecc
Confidence 358999999999999999999999987 9999999
No 445
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.97 E-value=0.00083 Score=66.49 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEECCEEEEcccCccChhhh
Q 013952 209 FYEGYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~--g~~~~v~~~---~g~--~i~~d~vi~a~G~~p~~~~~ 267 (433)
.+.+.++..+++++.++.|.+|..+++ +++..|... +|+ ++.|+.||+|.|..-+..++
T Consensus 219 ~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 219 QPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 333344466699999999999987544 356666443 343 58999999999977666655
No 446
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.94 E-value=0.00024 Score=59.35 Aligned_cols=43 Identities=35% Similarity=0.294 Sum_probs=33.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc
Q 013952 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPAL 49 (433)
Q Consensus 6 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~ 49 (433)
.||||||+|.+||+||+.+.++. ++.+|++||.+..|....++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred cceEEECCCccccceeeeeeccC-CCceEEEEEeeecCCCcccc
Confidence 59999999999999999999764 46679999999444433333
No 447
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.90 E-value=0.0012 Score=61.40 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=31.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+.+|||||||.+|+++|..|.++|.+ |+|+|+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeec
Confidence 35899999999999999999999998 9999998
No 448
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.89 E-value=0.0012 Score=68.23 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=31.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+|+|||||++|++||+.|.+.|++ |+|+|++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~ 270 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGR 270 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecc
Confidence 57899999999999999999999987 9999998
No 449
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.88 E-value=0.0014 Score=58.87 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=32.1
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+||||||+|.|||-||.+|+..|++ |+++|.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~---V~ildQE 37 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKR---VLILDQE 37 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCce---EEEEccc
Confidence 468999999999999999999999998 9999988
No 450
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.88 E-value=0.016 Score=58.33 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-------CC-cEEECCEEEEcccC
Q 013952 207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-------DG-RTLEADIVVVGVGG 260 (433)
Q Consensus 207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~-------~g-~~i~~d~vi~a~G~ 260 (433)
.+.+.+.+++.||+++.++.+.++..++++++.++... ++ ..+.++.||+|+|.
T Consensus 147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 34455566677899999999999876445677776553 22 36899999999995
No 451
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.86 E-value=0.017 Score=58.54 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=38.1
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952 210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~ 261 (433)
+.+.+++.||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 34445667999999999999876 4677766654 3554 58999999999953
No 452
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.002 Score=57.73 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=31.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
++|++|||+|.+|+..|..|+++|.+ |.|||+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR 33 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKR 33 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCE---EEEEecc
Confidence 37999999999999999999999988 9999999
No 453
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.81 E-value=0.022 Score=56.78 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
-.|+|||||.+|+-+|..++++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 454
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.78 E-value=0.019 Score=57.16 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~ 194 (433)
-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 37999999999999999999999999999876
No 455
>PRK08275 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.027 Score=56.87 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952 207 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 207 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~ 261 (433)
.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|..
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3455555677899999999999998743677776653 3554 48899999999964
No 456
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.75 E-value=0.021 Score=58.50 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=69.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCC----------------------------------------
Q 013952 162 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR---------------------------------------- 200 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~li~~~~~~~~~---------------------------------------- 200 (433)
.-.|+|||+|+.|+.+|..|++. |.+|+++++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35899999999999999999995 9999999866321100
Q ss_pred -----------C---------C-----C-HHHHHHHHHHHHhcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013952 201 -----------L---------F-----T-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D 245 (433)
Q Consensus 201 -----------~---------~-----~-~~~~~~l~~~l~~~G--V~v~~~~~v~~i~~~~~g-~~~~v~~~------~ 245 (433)
. + . ..+.+.+.+.+++.| +++.+++++++++.++++ ..+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0 0 0 023344555666655 578889999999864322 22345553 3
Q ss_pred C--cEEECCEEEEcccCccC
Q 013952 246 G--RTLEADIVVVGVGGRPL 263 (433)
Q Consensus 246 g--~~i~~d~vi~a~G~~p~ 263 (433)
| +++.||+||-|=|.+..
T Consensus 192 g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CceEEEEeCEEEECCCCchH
Confidence 4 57999999999997543
No 457
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0015 Score=65.34 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEECCEEEEcccCccChhhh
Q 013952 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~--~g---~-~i~~d~vi~a~G~~p~~~~~ 267 (433)
..+...++..++++.+++.+.++.. +.++...++.. ++ + ...++.||++.|...+..++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 3445567788899999999999988 45555566553 33 1 25788999999987777665
No 458
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.68 E-value=0.031 Score=56.95 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=66.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCC---------------CCC-----------------H----
Q 013952 163 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------LFT-----------------A---- 204 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~---------------~~~-----------------~---- 204 (433)
-.|+|||+|..|+-+|..+++. |.+|.++++.+..... ..+ +
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3799999999999999999998 9999998764321000 000 0
Q ss_pred -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013952 205 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK 242 (433)
Q Consensus 205 -----------------------------------------~~~~~l~~~l~~~G-V~v~~~~~v~~i~~~~~g~~~~v~ 242 (433)
.+.+.+.+.+++.+ |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11222334455555 99999999999875 356666653
Q ss_pred ---eCCCc--EEECCEEEEcccC
Q 013952 243 ---LKDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 243 ---~~~g~--~i~~d~vi~a~G~ 260 (433)
..+++ .+.++.||+|+|-
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCc
Confidence 23453 6899999999993
No 459
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.61 E-value=0.029 Score=54.67 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccC
Q 013952 206 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 206 ~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~-~~~g~--~i~~d~vi~a~G~ 260 (433)
+.+.+.+.+++ .||++++++.+.++.. +++++..+. ..+++ .+.++.||+|+|-
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 34445555554 5999999999999876 356666654 33443 5899999999995
No 460
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.60 E-value=0.03 Score=56.99 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=34.4
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013952 217 KGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 260 (433)
Q Consensus 217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~ 260 (433)
.||++++++.+.++..++++++.+|... +++ .+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3799999999999876445688887753 343 5889999999995
No 461
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.034 Score=56.55 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=38.8
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952 209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~ 260 (433)
.+.+.+++.||++++++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34445566789999999999987644477888764 3554 6889999999994
No 462
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.55 E-value=0.03 Score=56.60 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccC
Q 013952 209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGG 260 (433)
Q Consensus 209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g--~~i~~d~vi~a~G~ 260 (433)
.+.+.+++.||++++++.+.++.. ++|++.++... ++ ..+.++.||+|||-
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344445567899999999999886 47888887653 33 25789999999993
No 463
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=96.55 E-value=0.012 Score=44.89 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHhccCCCCCccCCCCCCeEEEee-cccceEEecCC
Q 013952 324 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDN 361 (433)
Q Consensus 324 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~ 361 (433)
|++||.+.. .+|..+|+||+.+ |++.+..+|..
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~ 34 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIV 34 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES-
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeec
Confidence 568888764 7899999999998 57888777754
No 464
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.55 E-value=0.035 Score=56.85 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=37.1
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013952 213 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 260 (433)
Q Consensus 213 ~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~---~g~--~i~~d~vi~a~G~ 260 (433)
.+++.||++++++.+.++.. +++++.+|... +|+ .+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45677899999999999876 46778777663 453 5899999999995
No 465
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.53 E-value=0.035 Score=55.10 Aligned_cols=56 Identities=29% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCcc
Q 013952 206 IAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRP 262 (433)
Q Consensus 206 ~~~~l~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~~~-g--~~i~~d~vi~a~G~~p 262 (433)
+.+.+.+.+++ .||++++++.+.++.. +++++..+...+ + ..+.++.||+|+|...
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 34445555665 6899999999999976 356666665543 2 3689999999999644
No 466
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.42 E-value=0.05 Score=55.25 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952 211 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 211 ~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~ 260 (433)
.+..++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 150 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 333456788889998888887645678888765 3453 5789999999994
No 467
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.014 Score=57.40 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=31.2
Q ss_pred CcCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 4 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
+.++++|||+|..|+.+|..|++.|++ |+++|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 457899999999999999999999987 9999887
No 468
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.38 E-value=0.0068 Score=41.95 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.6
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013952 167 VVGGGYIGLELSAALKINNIDVSMVYPEPWCM 198 (433)
Q Consensus 167 ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~ 198 (433)
|||+|.+|+-+|..|.+.|.+|+++++.+.+-
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 79999999999999999999999999987653
No 469
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.35 E-value=0.056 Score=54.82 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~ 261 (433)
..+.+.+++.||+++.++.+.++.. +++++.++.. .+++ .+.++.||+|+|-.
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3455556677999999999999875 4676666542 3553 58999999999954
No 470
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.018 Score=56.55 Aligned_cols=82 Identities=24% Similarity=0.194 Sum_probs=58.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013952 161 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 240 (433)
Q Consensus 161 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~ 240 (433)
..++++|+|+|.+|+.+|..|.+.|.+|+++++... ..+ +...+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 468999999999999999999999999999976431 222 2223445677887665543210
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013952 241 VKLKDGRTLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 241 v~~~~g~~i~~d~vi~a~G~~p~~~~~ 267 (433)
..-.+|.||.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012489999999988877755
No 471
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.32 E-value=0.072 Score=54.16 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~ 194 (433)
-.|+|||+|..|+-+|..+++.|.+|++++..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999998764
No 472
>PLN03000 amine oxidase
Probab=96.31 E-value=0.0049 Score=63.87 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=31.2
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
..+|+|||||++|++||..|++.|++ |+|+|+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~ 216 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGR 216 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEcc
Confidence 47999999999999999999999987 9999998
No 473
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.31 E-value=0.058 Score=54.38 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=38.0
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952 209 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 209 ~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~ 261 (433)
.+.+.+++.||++++++.+.++..++++++.++.. .+++ .+.++.||+|||-.
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 34445566789999999999987633444766543 4553 58899999999953
No 474
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.023 Score=56.00 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=75.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHHhCCc
Q 013952 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 86 (433)
Q Consensus 7 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (433)
+|+|||.|++|+++|+.|+++|++ |++.|+...+. .......+...|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~-----------------------------~~~~~~~l~~~gi 49 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPE-----------------------------LLERQQELEQEGI 49 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchh-----------------------------hHHHHHHHHHcCC
Confidence 589999999999999999999987 99998871110 0111234566788
Q ss_pred EEEeCceEEEEECCCCEEEeCCCcEEecceEEEccCCCccccCCCCCCCCCCCCEEEecCHHHHHHHHHHHHhcCCCcEE
Q 013952 87 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 166 (433)
Q Consensus 87 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~ 166 (433)
.+..+... +.+..... .-.+|.+|+++|..+..|.. ......++-.....+-. ..... ..+.+.
T Consensus 50 ~~~~g~~~---~~~~~~~~-----~~~~d~vv~s~gi~~~~~~~---~~a~~~~i~v~~~~~~~---~~~~~--~~~~I~ 113 (459)
T PRK02705 50 TVKLGKPL---ELESFQPW-----LDQPDLVVVSPGIPWDHPTL---VELRERGIEVIGEIELA---WRALK--HIPWVG 113 (459)
T ss_pred EEEECCcc---chhhhhHH-----hhcCCEEEECCCCCCCCHHH---HHHHHcCCcEEEhHHHH---HHhhc--CCCEEE
Confidence 88765322 11110000 12478899988876544431 11111121122222211 11111 234666
Q ss_pred EECCC---HHHHHHHHHHHhCCCeEEE
Q 013952 167 VVGGG---YIGLELSAALKINNIDVSM 190 (433)
Q Consensus 167 ViG~G---~~g~e~a~~l~~~g~~V~l 190 (433)
|-|+. -+.-.++..|...|.+...
T Consensus 114 VTGT~GKTTTt~ml~~iL~~~g~~~~~ 140 (459)
T PRK02705 114 ITGTNGKTTVTALLAHILQAAGLNAPA 140 (459)
T ss_pred EeCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 76652 3445566777777876554
No 475
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.22 E-value=0.016 Score=60.71 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCc
Q 013952 164 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 196 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~ 196 (433)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998754
No 476
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.18 E-value=0.077 Score=54.31 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=36.8
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013952 210 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 260 (433)
Q Consensus 210 l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~ 260 (433)
+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 3334455688888888888876644677777765 2453 5789999999994
No 477
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.18 E-value=0.0042 Score=62.40 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEECCEEEEcccCccChhhh
Q 013952 208 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF 267 (433)
Q Consensus 208 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~---~i~~d~vi~a~G~~p~~~~~ 267 (433)
..+....++.+++++.++.|.+|.. +++++++|++.++ . .+.++.||+|.|.--...++
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444444577899999999999987 4677888877443 2 35899999999965444444
No 478
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.16 E-value=0.034 Score=51.97 Aligned_cols=33 Identities=39% Similarity=0.616 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
.+|+|+|||..|+-.|..|.+.|.+|.+++...
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 589999999999999999999999999988653
No 479
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.14 E-value=0.054 Score=51.25 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCCeEEEEccCCccCCCC-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEEC
Q 013952 174 GLELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEA 251 (433)
Q Consensus 174 g~e~a~~l~~~g~~V~li~~~~~~~~~~-~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g-~~i~~ 251 (433)
.-++..++.+.|.... .+...++.|.. -..++.+.+.+.+++.||+++++++|++|+. ++ ..+.+.++ ..+.|
T Consensus 56 ~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a 130 (376)
T TIGR03862 56 AVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEA 130 (376)
T ss_pred HHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEec
Confidence 3467788888887533 44556666632 3568899999999999999999999999932 33 45666443 46999
Q ss_pred CEEEEcccCcc
Q 013952 252 DIVVVGVGGRP 262 (433)
Q Consensus 252 d~vi~a~G~~p 262 (433)
|.||+|+|..+
T Consensus 131 ~~vIlAtGG~s 141 (376)
T TIGR03862 131 DAVVLALGGAS 141 (376)
T ss_pred CEEEEcCCCcc
Confidence 99999999654
No 480
>PLN02785 Protein HOTHEAD
Probab=96.13 E-value=0.0062 Score=61.46 Aligned_cols=36 Identities=17% Similarity=0.577 Sum_probs=31.1
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEVAPY 44 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~ 44 (433)
.||+||||||.||..+|.+|.+ +.+ |+|||+...++
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~~~ 90 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGVPF 90 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCCCC
Confidence 5999999999999999999999 455 99999993333
No 481
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.12 E-value=0.085 Score=54.03 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~ 194 (433)
-.|+|||+|..|+-+|..+++.|.+|.+++..
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998764
No 482
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.11 E-value=0.0057 Score=55.28 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=29.8
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCC-CcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKP-GELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~-~~V~lie~~ 40 (433)
+.||+|||||..|.+.|.+|+++-.+. .+|+|+|++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 579999999999999999998762211 349999999
No 483
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.021 Score=54.06 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 194 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~ 194 (433)
.-.|+|||+|..|+|.|.+.++.|.+.++++..
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 348999999999999999999999998887654
No 484
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.08 E-value=0.089 Score=53.44 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013952 211 EGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 261 (433)
Q Consensus 211 ~~~l~~-~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G~~ 261 (433)
.+.+++ .||+++.++.+.++.. +++++.++.. .+++ .+.++.||+|+|-.
T Consensus 144 ~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 144 YSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 333433 5889999988888875 3666666543 3554 58999999999953
No 485
>PLN02976 amine oxidase
Probab=96.04 E-value=0.0072 Score=65.34 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=31.0
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~ 40 (433)
.++|+|||||++|+++|+.|.+.|++ |+|+|+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~ 725 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEAR 725 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeec
Confidence 47999999999999999999999987 9999987
No 486
>PTZ00367 squalene epoxidase; Provisional
Probab=95.98 E-value=0.078 Score=53.36 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999764
No 487
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.084 Score=50.56 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=62.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCC---------------------C---CCHHHHHHHH----
Q 013952 163 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR---------------------L---FTADIAAFYE---- 211 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g---~~V~li~~~~~~~~~---------------------~---~~~~~~~~l~---- 211 (433)
.+|+|||+|.+|+.+|..|.+.- ..|+++++.+.+... . .+.++.+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998762 237887766432110 0 1122333322
Q ss_pred ------------------------------HHHHhcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013952 212 ------------------------------GYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 258 (433)
Q Consensus 212 ------------------------------~~l~~~G---V~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~ 258 (433)
.++++.- |.++ ..+...+....++....+...+|....||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 2233222 3333 33444444433466677888899999999999999
Q ss_pred cCccCh
Q 013952 259 GGRPLI 264 (433)
Q Consensus 259 G~~p~~ 264 (433)
|..+..
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 965443
No 488
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.90 E-value=0.014 Score=51.90 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=38.4
Q ss_pred cCeEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEcCCCCCCCCCCccccccCCC
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEVAPYERPALSKAYLFPE 57 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~----g~~~~~V~lie~~~~~~~~~~~~~~~~~~~ 57 (433)
+.+|+|||+|..|++.|..+.+. ..+..+|++++....+..-+...-+++.+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~ 59 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPD 59 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecc
Confidence 57999999999999999888874 345578999998854544444444555443
No 489
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.87 E-value=0.015 Score=55.91 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=46.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCCCCCHHHHHHHHHHHHhcCc
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI 219 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~-~~~~~~~~~~~~~~~l~~~l~~~GV 219 (433)
..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+......+...-.+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 57999999999999999999999999999997 3444432334556667778888888
No 490
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.85 E-value=0.13 Score=52.26 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013952 162 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP 193 (433)
Q Consensus 162 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~ 193 (433)
+..|+|||+|..|+-+|..+++.|.+|.+++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 44799999999999999999999999999874
No 491
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.81 E-value=0.14 Score=52.71 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013952 212 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 259 (433)
Q Consensus 212 ~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g~--~i~~d~vi~a~G 259 (433)
+.+++.||+++.++.+.++.. +++++.++.. .+|+ .+.|+.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 445667999999999999986 4677766654 3554 468999999999
No 492
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.80 E-value=0.077 Score=52.96 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=32.5
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCC--Cc--EEECCEEEEcccCcc
Q 013952 217 KGIKIIKGTVAVGFTTNADGEVKEVKLKD--GR--TLEADIVVVGVGGRP 262 (433)
Q Consensus 217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~~~--g~--~i~~d~vi~a~G~~p 262 (433)
.||++++++.+.++.. +++++..+...+ ++ .+.++.||+|+|-..
T Consensus 142 ~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 142 PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 4788888888888765 466666666533 32 688999999999644
No 493
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.76 E-value=0.052 Score=50.95 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013952 202 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 262 (433)
Q Consensus 202 ~~~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p 262 (433)
.+..+...+.+.+++.|++++.+++|.++.. .++.+..|.+.+| .+.||.||+|+|...
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 3678899999999999999999999999987 4555667887777 799999999999543
No 494
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.72 E-value=0.03 Score=52.57 Aligned_cols=102 Identities=22% Similarity=0.360 Sum_probs=61.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc--CCCCC------------------C-------------------
Q 013952 164 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF------------------T------------------- 203 (433)
Q Consensus 164 ~v~ViG~G~~g~e~a~~l~~~g-~~V~li~~~~~~--~~~~~------------------~------------------- 203 (433)
.++.||.|+..+-+|..|.+.+ .++.++++.+.+ .+.++ +
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998876 778888865432 11000 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cEEEEEeC----CCcEEECCEEEEcccCccChh
Q 013952 204 -----------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS 265 (433)
Q Consensus 204 -----------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~g--~~~~v~~~----~g~~i~~d~vi~a~G~~p~~~ 265 (433)
.+..+.++-..++..-.+.++++|++|....++ ....|.+. +++.+.|+.||+++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 133445555555566558889999999874433 35677773 346899999999999888764
No 495
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.67 E-value=0.084 Score=53.15 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=34.8
Q ss_pred HHHHHHh-cCcEEEcCCeEEEEEecC-CCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013952 210 YEGYYAN-KGIKIIKGTVAVGFTTNA-DGEVKEVKLK-DGR--TLEADIVVVGVGG 260 (433)
Q Consensus 210 l~~~l~~-~GV~v~~~~~v~~i~~~~-~g~~~~v~~~-~g~--~i~~d~vi~a~G~ 260 (433)
+.+.+++ .||++++++.+.++..++ ++++.++... +|. .+.++.||+|||-
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 3334443 478888888888886532 3677776543 443 3789999999995
No 496
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.51 E-value=0.3 Score=49.33 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=28.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 195 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~ 195 (433)
-.|+|||+|..|+-+|..+++.|.+|.+++..+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999998887654
No 497
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.50 E-value=0.027 Score=52.40 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=66.5
Q ss_pred cCeEEEECCCHHHHHHHHHHHHcCC-CCCcEE-EEcCCCCCCCCCCccccccCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 013952 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELA-IISKEVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 82 (433)
Q Consensus 5 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (433)
...|-|||+|+-|--.|..|.+.-. ...+|. |++... . .. .-+|.+. .....+.++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~---------kiLPeyl-------s~wt~ekir 404 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---ME---------KILPEYL-------SQWTIEKIR 404 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hh---------hhhHHHH-------HHHHHHHHH
Confidence 4579999999999999999887521 122232 333220 0 00 0111110 123345567
Q ss_pred hCCcEEEeCceEEEEECCCC--EEEeCCCcEEecceEEEccCCCccc
Q 013952 83 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 127 (433)
Q Consensus 83 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 127 (433)
+.||.++.+..|.++....+ .+.+.||.++..|.+|+|+|..|+.
T Consensus 405 ~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 405 KGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred hcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 78999999988877655444 4678899999999999999998864
No 498
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.48 E-value=0.014 Score=50.94 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=56.8
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCCCCCHHHHHHHHHHHHhcCcE----------EE--cCCeEEEE
Q 013952 165 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVGF 230 (433)
Q Consensus 165 v~ViG~G~~g~e~a~~l~~~--g~~V~li~~~~~~~~~~~~~~~~~~l~~~l~~~GV~----------v~--~~~~v~~i 230 (433)
.+|||||..|+.+|..|+.+ ..+|.+++.++-...- .--+.+-+.+++..|+ +. .+. |..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~ 76 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTW 76 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhh
Confidence 58999999999999999876 4577777765433221 1112223333333332 11 011 2233
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013952 231 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 264 (433)
Q Consensus 231 ~~~~~g~~~~v~~~~g~~i~~d~vi~a~G~~p~~ 264 (433)
.. .-..+++.+|.++.++.+++++|.+|-.
T Consensus 77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence 22 1146888999999999999999999954
No 499
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.40 E-value=0.25 Score=50.12 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=32.4
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEe---CCC--cEEECCEEEEcccC
Q 013952 217 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDG--RTLEADIVVVGVGG 260 (433)
Q Consensus 217 ~GV~v~~~~~v~~i~~~~~g~~~~v~~---~~g--~~i~~d~vi~a~G~ 260 (433)
.+|+++.++.+.++.. +++++.++.. .+| ..+.++.||+|+|-
T Consensus 146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 4788888888888876 4677766543 355 36889999999994
No 500
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.38 E-value=0.025 Score=54.06 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013952 163 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 197 (433)
Q Consensus 163 ~~v~ViG~G~~g~e~a~~l~~~g~~V~li~~~~~~ 197 (433)
++|+|||+|+.|+++|..|++.|.+|++++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999975544
Done!