BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013954
         (433 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4
          Length = 336

 Score = 37.7 bits (86), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 338 YEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQEA 397
           Y++ +SH   L   RA         +  + V +    NT YR F  A VED     +Q  
Sbjct: 178 YKQDESHTAPLYCARA--------VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNI 229

Query: 398 GSEEGALT--QALPYMIFLASPIFVILLIAVQRGS 430
           GS+   L    +LP + F++     +LL++VQ+GS
Sbjct: 230 GSQSAELRIFPSLPLLNFIS-----MLLLSVQKGS 259


>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
 pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
 pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
           6-Phosphate
          Length = 432

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 126 RGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVG 185
           RG+   +VG  +EGLK+ S D + L++   KEG G P         F +G +P V I   
Sbjct: 200 RGDRAFDVGRPQEGLKLVSNDRLVLSYV--KEGAGQP--------DFCDGHSPAVTITFV 249

Query: 186 DTSKFGESTVLRPGPKQEENLEF 208
             S+  E T+  P    + N  F
Sbjct: 250 CPSERREGTI--PKLTAKSNCRF 270


>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
 pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
 pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
           Anhydro-Neu5ac, The Reaction Product
 pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
           Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
 pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
           Propenyl-Neu5ac, An Inactive Substrate Analogue
          Length = 679

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 323 ICQDSLHRPKEARIMYE-KLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTD--YR 379
           I  D+ ++P E R+  E  L  H   L  K   Q+ ++F    +++ ++  D N +  Y+
Sbjct: 360 IYNDATNQPTEFRVDGEYNLYQHDTNLTCK---QYDYNFSGNNLIESKTDVDVNMNIFYK 416

Query: 380 N-FFEAFVEDKTNYPLQEAGSEEGA 403
           N  F+AF    TNY       +EGA
Sbjct: 417 NSVFKAF---PTNYLAMRYSDDEGA 438


>pdb|2L21|A Chain A, Chicken Igf2r Domain 11
          Length = 154

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 260 AYKKSVGLNVDPKLKSECEK----ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 310
           ++ + + LNV  + KS C       + DG   +++GKL + L + ++V+ K+V++
Sbjct: 36  SHNRKIELNVCAEAKSSCANGAAVCITDGPKTLNAGKLSKTLTYEDQVL-KLVYE 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,308,738
Number of Sequences: 62578
Number of extensions: 520442
Number of successful extensions: 893
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 9
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)