BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013954
         (433 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B0THN3|ATPG_HELMI ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain
           ATCC 51547 / Ice1) GN=atpG PE=3 SV=1
          Length = 290

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 39  NATSNNDEASEQPISENSPEPEASLDPVKLAFEKAKAYRKLKESNSDSKYEQNPDKDVAR 98
           +A S  D    QP+    P PEA LD +   + + + YR L ES +    EQ        
Sbjct: 194 SANSAKDSKGPQPLYAFEPSPEAVLDELLPKYVENQIYRALLESKAS---EQGARMTAMG 250

Query: 99  AAVEKAKEYKKNKDTVSF 116
           +A + AKE   NK T+SF
Sbjct: 251 SATDNAKEM-INKLTLSF 267


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.129    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,893,128
Number of Sequences: 539616
Number of extensions: 7351646
Number of successful extensions: 18449
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 18096
Number of HSP's gapped (non-prelim): 335
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)