Query 013954
Match_columns 433
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13432 TPR_16: Tetratricopep 98.2 8.4E-06 1.8E-10 60.4 7.1 62 281-346 1-63 (65)
2 PF14559 TPR_19: Tetratricopep 98.0 2.1E-05 4.6E-10 58.2 6.8 60 287-350 1-62 (68)
3 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00012 2.6E-09 57.5 9.2 77 277-354 39-116 (119)
4 PF13525 YfiO: Outer membrane 97.8 0.00011 2.5E-09 66.9 9.5 77 276-353 4-81 (203)
5 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00018 4E-09 56.5 9.0 70 277-347 2-72 (119)
6 PF13414 TPR_11: TPR repeat; P 97.7 0.00016 3.5E-09 53.8 6.4 62 277-342 3-65 (69)
7 PRK10803 tol-pal system protei 97.6 0.00041 8.9E-09 67.3 10.8 102 253-357 158-260 (263)
8 PF13512 TPR_18: Tetratricopep 97.5 0.00051 1.1E-08 62.4 8.2 71 277-348 10-81 (142)
9 PF13424 TPR_12: Tetratricopep 97.4 0.00062 1.3E-08 52.0 7.2 65 277-341 5-72 (78)
10 PF09976 TPR_21: Tetratricopep 97.3 0.0044 9.6E-08 53.2 11.9 75 271-346 42-116 (145)
11 PRK10866 outer membrane biogen 97.3 0.00095 2.1E-08 63.5 8.5 72 276-348 31-103 (243)
12 PF12688 TPR_5: Tetratrico pep 97.3 0.0015 3.3E-08 57.0 8.4 74 280-354 4-78 (120)
13 TIGR02552 LcrH_SycD type III s 97.2 0.0029 6.3E-08 51.9 8.9 76 280-359 54-134 (135)
14 TIGR03302 OM_YfiO outer membra 97.2 0.0014 3.1E-08 58.9 7.7 77 271-348 27-104 (235)
15 PF13371 TPR_9: Tetratricopept 97.1 0.0027 5.9E-08 47.6 7.5 70 284-357 2-72 (73)
16 PRK15359 type III secretion sy 97.1 0.0056 1.2E-07 53.3 10.0 99 250-357 36-139 (144)
17 cd00189 TPR Tetratricopeptide 97.0 0.0023 5E-08 44.7 6.1 64 280-347 3-67 (100)
18 TIGR03302 OM_YfiO outer membra 97.0 0.0072 1.6E-07 54.4 10.7 65 280-345 169-234 (235)
19 cd00189 TPR Tetratricopeptide 96.9 0.011 2.3E-07 41.4 8.5 84 253-345 15-99 (100)
20 PF12895 Apc3: Anaphase-promot 96.8 0.0029 6.3E-08 49.5 5.3 50 290-341 2-51 (84)
21 PF12688 TPR_5: Tetratrico pep 96.6 0.016 3.4E-07 50.7 9.3 85 255-342 18-102 (120)
22 KOG2376 Signal recognition par 96.6 0.0067 1.5E-07 66.0 8.4 82 267-348 164-257 (652)
23 PLN03088 SGT1, suppressor of 96.6 0.014 3.1E-07 58.2 10.1 105 243-356 7-113 (356)
24 PLN03088 SGT1, suppressor of 96.6 0.011 2.4E-07 58.9 9.1 64 278-345 3-67 (356)
25 PRK15359 type III secretion sy 96.6 0.0059 1.3E-07 53.1 6.3 63 280-346 27-90 (144)
26 PF03704 BTAD: Bacterial trans 96.5 0.052 1.1E-06 46.1 11.6 106 248-357 23-146 (146)
27 PF12895 Apc3: Anaphase-promot 96.5 0.006 1.3E-07 47.7 5.2 60 276-340 24-83 (84)
28 CHL00033 ycf3 photosystem I as 96.4 0.024 5.2E-07 49.5 9.0 74 273-347 31-105 (168)
29 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.055 1.2E-06 57.4 12.9 67 277-344 75-141 (453)
30 cd05804 StaR_like StaR_like; a 96.3 0.041 9E-07 52.0 10.8 65 278-342 149-213 (355)
31 KOG0553 TPR repeat-containing 96.2 0.04 8.7E-07 55.8 10.8 81 272-352 76-187 (304)
32 PF13174 TPR_6: Tetratricopept 96.2 0.0061 1.3E-07 39.4 3.2 31 316-346 1-32 (33)
33 PRK02603 photosystem I assembl 96.1 0.063 1.4E-06 47.3 10.4 72 275-347 33-105 (172)
34 TIGR02552 LcrH_SycD type III s 96.1 0.048 1E-06 44.8 9.1 73 267-346 10-83 (135)
35 PRK15179 Vi polysaccharide bio 96.1 0.017 3.6E-07 63.5 8.1 70 277-346 86-186 (694)
36 PRK10803 tol-pal system protei 96.1 0.031 6.7E-07 54.5 9.0 71 278-349 143-215 (263)
37 PRK10370 formate-dependent nit 96.1 0.067 1.5E-06 49.3 10.7 79 254-341 55-136 (198)
38 TIGR00990 3a0801s09 mitochondr 96.1 0.02 4.3E-07 60.0 8.2 59 280-342 163-221 (615)
39 TIGR02521 type_IV_pilW type IV 96.0 0.044 9.6E-07 46.1 8.3 85 252-345 45-129 (234)
40 PRK15179 Vi polysaccharide bio 95.9 0.046 1E-06 60.1 10.4 102 248-358 130-231 (694)
41 PF09976 TPR_21: Tetratricopep 95.9 0.11 2.3E-06 44.7 10.4 80 274-354 8-88 (145)
42 TIGR02917 PEP_TPR_lipo putativ 95.6 0.11 2.3E-06 52.8 10.7 87 252-348 717-804 (899)
43 TIGR02521 type_IV_pilW type IV 95.6 0.12 2.7E-06 43.4 9.4 62 278-343 136-197 (234)
44 PRK15363 pathogenicity island 95.6 0.041 8.8E-07 51.0 7.0 65 274-342 32-96 (157)
45 PRK10866 outer membrane biogen 95.5 0.3 6.6E-06 46.7 12.9 142 252-396 46-209 (243)
46 TIGR00990 3a0801s09 mitochondr 95.5 0.062 1.3E-06 56.4 8.8 63 280-346 402-465 (615)
47 PF14938 SNAP: Soluble NSF att 95.4 0.056 1.2E-06 51.8 7.5 82 277-358 114-200 (282)
48 PRK11788 tetratricopeptide rep 95.2 0.32 6.9E-06 46.6 12.1 59 280-342 183-241 (389)
49 PRK11189 lipoprotein NlpI; Pro 95.0 0.17 3.7E-06 48.8 9.7 84 256-348 82-166 (296)
50 PRK15174 Vi polysaccharide exp 95.0 0.14 2.9E-06 55.2 9.8 65 279-347 286-351 (656)
51 PRK12370 invasion protein regu 95.0 0.14 3E-06 53.7 9.6 62 281-346 342-404 (553)
52 TIGR02917 PEP_TPR_lipo putativ 94.8 0.11 2.3E-06 52.8 8.0 61 278-342 23-83 (899)
53 COG3118 Thioredoxin domain-con 94.8 0.12 2.7E-06 52.4 8.3 63 276-342 133-195 (304)
54 PRK10747 putative protoheme IX 94.8 0.09 1.9E-06 52.8 7.3 58 279-341 330-387 (398)
55 PF13429 TPR_15: Tetratricopep 94.8 0.085 1.8E-06 49.3 6.7 99 249-356 157-257 (280)
56 PRK10153 DNA-binding transcrip 94.4 0.34 7.3E-06 51.6 11.0 70 284-358 427-497 (517)
57 TIGR03504 FimV_Cterm FimV C-te 94.4 0.088 1.9E-06 39.4 4.8 41 318-358 2-42 (44)
58 PF13429 TPR_15: Tetratricopep 94.4 0.29 6.4E-06 45.8 9.4 102 249-360 124-227 (280)
59 PF13525 YfiO: Outer membrane 94.4 0.34 7.3E-06 44.5 9.6 125 271-396 36-175 (203)
60 PRK12370 invasion protein regu 94.4 0.55 1.2E-05 49.3 12.3 84 250-342 350-433 (553)
61 CHL00033 ycf3 photosystem I as 94.3 0.31 6.7E-06 42.6 8.8 82 252-339 49-137 (168)
62 PRK11447 cellulose synthase su 93.9 0.42 9E-06 54.6 11.1 65 279-347 353-418 (1157)
63 PF13428 TPR_14: Tetratricopep 93.9 0.1 2.2E-06 37.1 4.1 32 316-347 2-34 (44)
64 PRK02603 photosystem I assembl 93.9 0.45 9.8E-06 41.9 9.0 74 253-332 50-123 (172)
65 PRK11788 tetratricopeptide rep 93.8 0.95 2.1E-05 43.4 11.8 63 280-342 72-134 (389)
66 COG1729 Uncharacterized protei 93.7 0.53 1.2E-05 46.9 10.0 81 276-357 177-258 (262)
67 PRK11447 cellulose synthase su 93.5 0.34 7.3E-06 55.3 9.5 64 281-348 465-529 (1157)
68 KOG0543 FKBP-type peptidyl-pro 93.4 0.24 5.2E-06 52.0 7.4 76 275-350 206-292 (397)
69 PRK15331 chaperone protein Sic 93.3 0.22 4.9E-06 46.6 6.4 65 273-341 33-97 (165)
70 PF07719 TPR_2: Tetratricopept 93.3 0.18 3.9E-06 32.7 4.2 31 278-308 2-32 (34)
71 PRK09782 bacteriophage N4 rece 92.7 0.71 1.5E-05 53.0 10.5 59 284-346 650-709 (987)
72 KOG0547 Translocase of outer m 92.6 0.25 5.5E-06 53.6 6.3 106 278-388 116-264 (606)
73 PRK10049 pgaA outer membrane p 92.5 0.57 1.2E-05 51.3 9.0 66 278-347 360-426 (765)
74 PF14938 SNAP: Soluble NSF att 92.4 0.3 6.6E-06 46.8 6.2 89 254-342 51-142 (282)
75 cd05804 StaR_like StaR_like; a 92.2 0.46 9.9E-06 45.1 7.0 61 279-343 116-176 (355)
76 PF10602 RPN7: 26S proteasome 92.0 0.84 1.8E-05 42.0 8.3 91 243-343 8-101 (177)
77 PRK10049 pgaA outer membrane p 92.0 1 2.2E-05 49.4 10.2 91 249-349 60-151 (765)
78 KOG4234 TPR repeat-containing 91.9 0.74 1.6E-05 45.8 8.1 82 275-356 93-211 (271)
79 KOG1840 Kinesin light chain [C 91.8 0.81 1.7E-05 49.2 9.0 60 282-341 246-309 (508)
80 PRK11189 lipoprotein NlpI; Pro 91.7 1.7 3.7E-05 42.1 10.4 70 275-348 62-132 (296)
81 TIGR00540 hemY_coli hemY prote 91.7 0.58 1.3E-05 47.1 7.4 59 277-340 335-395 (409)
82 COG3063 PilF Tfp pilus assembl 91.6 1 2.2E-05 45.0 8.7 72 274-349 32-105 (250)
83 PRK15174 Vi polysaccharide exp 91.4 1 2.3E-05 48.6 9.5 87 253-348 227-318 (656)
84 COG4105 ComL DNA uptake lipopr 91.4 0.91 2E-05 45.3 8.3 72 276-348 33-108 (254)
85 PF00515 TPR_1: Tetratricopept 91.0 0.45 9.8E-06 31.3 4.1 31 278-308 2-32 (34)
86 COG5010 TadD Flp pilus assembl 90.9 0.53 1.1E-05 47.0 6.1 56 283-342 106-161 (257)
87 KOG1840 Kinesin light chain [C 90.7 1.4 3.1E-05 47.4 9.5 67 275-341 281-351 (508)
88 PRK09782 bacteriophage N4 rece 90.6 1.2 2.6E-05 51.2 9.4 28 281-308 82-109 (987)
89 PF11817 Foie-gras_1: Foie gra 90.2 2.1 4.6E-05 40.9 9.3 87 252-344 159-247 (247)
90 PRK14574 hmsH outer membrane p 90.1 1.7 3.7E-05 49.1 9.9 106 283-395 108-223 (822)
91 KOG4648 Uncharacterized conser 89.6 1.7 3.6E-05 46.2 8.6 106 264-369 81-221 (536)
92 PF13181 TPR_8: Tetratricopept 89.2 0.71 1.5E-05 30.2 3.8 31 278-308 2-32 (34)
93 PF13174 TPR_6: Tetratricopept 88.9 0.61 1.3E-05 29.9 3.3 30 279-308 2-31 (33)
94 KOG0550 Molecular chaperone (D 88.7 0.96 2.1E-05 48.4 6.3 130 264-393 227-409 (486)
95 PRK10747 putative protoheme IX 88.0 1.3 2.8E-05 44.6 6.5 58 283-344 159-216 (398)
96 KOG0548 Molecular co-chaperone 88.0 2.5 5.5E-05 46.1 8.9 73 268-347 352-425 (539)
97 COG1729 Uncharacterized protei 87.6 2 4.3E-05 43.0 7.4 66 280-346 144-210 (262)
98 KOG0543 FKBP-type peptidyl-pro 87.3 1.3 2.8E-05 46.7 6.2 56 283-342 263-318 (397)
99 PF03745 DUF309: Domain of unk 86.8 1.8 3.9E-05 34.3 5.3 60 279-338 1-62 (62)
100 COG2956 Predicted N-acetylgluc 86.6 1.6 3.5E-05 45.7 6.4 59 280-341 217-275 (389)
101 COG4700 Uncharacterized protei 86.5 1.8 3.9E-05 42.7 6.3 66 276-346 88-156 (251)
102 PF12862 Apc5: Anaphase-promot 86.3 2.5 5.5E-05 34.6 6.2 57 286-342 7-68 (94)
103 PF13176 TPR_7: Tetratricopept 86.0 1 2.3E-05 30.9 3.3 24 282-305 4-27 (36)
104 PF13414 TPR_11: TPR repeat; P 86.0 2.2 4.8E-05 31.5 5.3 55 248-307 13-68 (69)
105 PF03704 BTAD: Bacterial trans 85.7 7.6 0.00016 33.0 9.1 75 275-349 4-97 (146)
106 PRK15363 pathogenicity island 85.1 3.9 8.6E-05 38.1 7.5 76 281-360 73-153 (157)
107 KOG2076 RNA polymerase III tra 84.8 2.5 5.4E-05 48.5 7.2 65 274-341 411-475 (895)
108 PRK14574 hmsH outer membrane p 84.8 3.7 8.1E-05 46.5 8.6 91 248-347 44-135 (822)
109 TIGR00540 hemY_coli hemY prote 84.7 7.4 0.00016 39.3 9.9 73 282-357 123-197 (409)
110 PF13432 TPR_16: Tetratricopep 84.3 4.9 0.00011 29.5 6.4 55 250-309 9-63 (65)
111 PF13374 TPR_10: Tetratricopep 84.2 2 4.4E-05 28.5 4.0 25 281-305 6-30 (42)
112 PF12968 DUF3856: Domain of Un 83.9 5 0.00011 37.2 7.5 95 244-340 15-125 (144)
113 PF13428 TPR_14: Tetratricopep 81.9 2.2 4.8E-05 30.2 3.6 33 280-312 4-36 (44)
114 PF13424 TPR_12: Tetratricopep 81.9 3.1 6.8E-05 31.6 4.7 34 274-307 43-76 (78)
115 PF13176 TPR_7: Tetratricopept 81.5 2.4 5.2E-05 29.1 3.6 22 319-340 3-24 (36)
116 PRK14720 transcript cleavage f 81.3 3.7 8.1E-05 47.3 6.9 85 254-343 34-144 (906)
117 COG0457 NrfG FOG: TPR repeat [ 81.0 15 0.00034 28.4 8.2 55 286-342 139-194 (291)
118 PF13374 TPR_10: Tetratricopep 80.5 3.2 7E-05 27.5 3.9 25 317-341 4-28 (42)
119 PF10579 Rapsyn_N: Rapsyn N-te 80.2 6.5 0.00014 33.4 6.3 62 275-337 4-65 (80)
120 PF07719 TPR_2: Tetratricopept 79.9 4 8.7E-05 26.3 4.1 31 316-346 2-33 (34)
121 KOG2076 RNA polymerase III tra 79.8 2.8 6.1E-05 48.1 5.3 59 280-342 452-510 (895)
122 PF12569 NARP1: NMDA receptor- 79.6 7.1 0.00015 42.1 8.0 64 280-347 7-71 (517)
123 PF09613 HrpB1_HrpK: Bacterial 78.7 33 0.00072 32.3 11.1 96 252-359 27-122 (160)
124 COG4783 Putative Zn-dependent 78.6 6.1 0.00013 42.8 7.1 56 283-342 346-401 (484)
125 smart00028 TPR Tetratricopepti 78.2 2.6 5.6E-05 24.3 2.6 26 281-306 5-30 (34)
126 PF07721 TPR_4: Tetratricopept 78.2 2.9 6.3E-05 27.2 3.0 24 317-340 3-26 (26)
127 PF09986 DUF2225: Uncharacteri 78.1 5.4 0.00012 38.1 6.0 73 284-356 132-210 (214)
128 KOG3785 Uncharacterized conser 77.7 7.8 0.00017 41.6 7.5 110 227-346 12-122 (557)
129 KOG1126 DNA-binding cell divis 76.9 10 0.00022 42.4 8.3 95 258-361 475-571 (638)
130 PF09295 ChAPs: ChAPs (Chs5p-A 76.9 8.2 0.00018 40.4 7.4 68 277-348 234-301 (395)
131 KOG1156 N-terminal acetyltrans 75.6 13 0.00027 42.0 8.6 97 254-358 162-264 (700)
132 PF04184 ST7: ST7 protein; In 74.7 7 0.00015 42.8 6.3 37 311-347 255-292 (539)
133 PRK04841 transcriptional regul 74.7 9.9 0.00021 41.4 7.5 63 280-342 694-758 (903)
134 KOG3060 Uncharacterized conser 74.5 12 0.00026 38.2 7.5 62 284-349 59-121 (289)
135 KOG1155 Anaphase-promoting com 74.4 9.6 0.00021 41.7 7.2 83 252-343 378-460 (559)
136 COG3071 HemY Uncharacterized e 74.4 7.4 0.00016 41.3 6.2 59 278-341 329-387 (400)
137 COG0457 NrfG FOG: TPR repeat [ 74.2 18 0.0004 28.0 6.9 60 278-341 96-156 (291)
138 PF04733 Coatomer_E: Coatomer 73.5 11 0.00024 37.3 6.9 58 284-345 208-267 (290)
139 TIGR00208 fliS flagellar biosy 73.2 22 0.00048 31.4 8.1 73 257-329 6-88 (124)
140 KOG2002 TPR-containing nuclear 72.7 6.8 0.00015 45.6 5.9 112 282-393 457-581 (1018)
141 smart00028 TPR Tetratricopepti 72.7 7.9 0.00017 22.1 3.7 26 317-342 3-28 (34)
142 PF13181 TPR_8: Tetratricopept 72.6 7.8 0.00017 25.2 4.0 27 316-342 2-28 (34)
143 KOG0548 Molecular co-chaperone 71.7 9.4 0.0002 41.9 6.4 77 278-354 3-110 (539)
144 PF14559 TPR_19: Tetratricopep 71.7 6.6 0.00014 28.8 3.8 58 252-314 5-62 (68)
145 KOG4056 Translocase of outer m 70.1 13 0.00028 34.7 6.1 47 270-316 70-120 (143)
146 KOG1125 TPR repeat-containing 68.1 7 0.00015 43.1 4.6 83 251-338 477-565 (579)
147 PF10345 Cohesin_load: Cohesin 67.9 26 0.00057 37.7 8.8 125 239-363 344-505 (608)
148 PRK15331 chaperone protein Sic 67.9 19 0.00041 34.0 6.9 72 284-361 78-152 (165)
149 TIGR02508 type_III_yscG type I 67.2 15 0.00032 33.2 5.6 72 275-356 38-109 (115)
150 PRK04841 transcriptional regul 66.7 48 0.001 36.2 10.6 61 282-342 457-518 (903)
151 KOG2003 TPR repeat-containing 66.5 26 0.00057 38.8 8.4 27 316-342 559-585 (840)
152 COG4105 ComL DNA uptake lipopr 66.3 57 0.0012 32.9 10.1 72 275-347 165-237 (254)
153 PF13371 TPR_9: Tetratricopept 66.2 12 0.00026 27.9 4.3 53 252-309 9-61 (73)
154 KOG4626 O-linked N-acetylgluco 66.0 11 0.00024 42.8 5.7 67 275-345 113-181 (966)
155 COG2976 Uncharacterized protei 65.9 22 0.00049 34.9 7.1 87 253-348 104-193 (207)
156 PF10300 DUF3808: Protein of u 65.3 14 0.0003 38.9 6.0 68 280-347 270-337 (468)
157 PRK10370 formate-dependent nit 64.7 32 0.00069 31.9 7.6 64 290-357 52-117 (198)
158 PF08631 SPO22: Meiosis protei 64.2 32 0.00069 33.4 7.8 79 268-346 25-119 (278)
159 PF02064 MAS20: MAS20 protein 62.9 12 0.00026 33.5 4.4 40 276-315 62-101 (121)
160 KOG0624 dsRNA-activated protei 62.9 15 0.00032 39.4 5.6 83 273-355 34-147 (504)
161 PF00515 TPR_1: Tetratricopept 61.7 15 0.00033 23.9 3.7 26 317-342 3-28 (34)
162 KOG3785 Uncharacterized conser 61.2 10 0.00022 40.7 4.1 60 287-349 32-93 (557)
163 TIGR00985 3a0801s04tom mitocho 60.5 51 0.0011 30.7 8.1 53 263-315 75-129 (148)
164 smart00509 TFS2N Domain in the 60.3 11 0.00025 30.5 3.5 26 338-363 47-72 (75)
165 PF13431 TPR_17: Tetratricopep 59.9 10 0.00023 26.1 2.7 33 300-336 2-34 (34)
166 KOG4626 O-linked N-acetylgluco 59.6 35 0.00076 39.1 8.0 10 60-69 46-55 (966)
167 PRK04778 septation ring format 59.5 23 0.00049 38.3 6.5 59 248-311 495-553 (569)
168 cd00183 TFIIS_I N-terminal dom 59.5 12 0.00026 30.2 3.5 26 338-363 49-74 (76)
169 PF09670 Cas_Cas02710: CRISPR- 59.5 80 0.0017 32.6 10.1 74 272-347 126-201 (379)
170 COG4235 Cytochrome c biogenesi 58.9 27 0.00059 35.6 6.5 35 284-318 234-268 (287)
171 PRK11619 lytic murein transgly 57.5 87 0.0019 34.9 10.6 59 301-369 332-390 (644)
172 PF14561 TPR_20: Tetratricopep 57.4 40 0.00087 28.1 6.3 29 278-306 23-51 (90)
173 KOG2002 TPR-containing nuclear 56.7 31 0.00068 40.5 7.2 61 283-343 722-797 (1018)
174 PF13512 TPR_18: Tetratricopep 56.3 76 0.0017 29.3 8.4 84 271-355 41-140 (142)
175 KOG1173 Anaphase-promoting com 56.2 59 0.0013 36.4 8.9 112 243-358 205-322 (611)
176 PF06160 EzrA: Septation ring 56.2 23 0.00049 38.4 5.8 58 249-311 492-550 (560)
177 PF10952 DUF2753: Protein of u 54.8 79 0.0017 29.5 8.2 26 282-307 6-31 (140)
178 PF14561 TPR_20: Tetratricopep 54.7 49 0.0011 27.6 6.4 64 296-363 7-71 (90)
179 KOG2758 Translation initiation 54.6 65 0.0014 34.4 8.5 77 255-336 112-198 (432)
180 COG2976 Uncharacterized protei 54.3 42 0.00092 33.0 6.7 74 273-347 85-158 (207)
181 PRK05685 fliS flagellar protei 54.3 79 0.0017 28.1 8.0 72 258-329 7-92 (132)
182 cd02682 MIT_AAA_Arch MIT: doma 52.9 20 0.00044 29.8 3.8 26 316-341 7-32 (75)
183 COG1516 FliS Flagellin-specifi 52.4 35 0.00076 31.4 5.6 100 257-361 6-118 (132)
184 KOG1126 DNA-binding cell divis 52.2 44 0.00094 37.7 7.2 35 280-314 560-594 (638)
185 PF14863 Alkyl_sulf_dimr: Alky 50.3 20 0.00043 32.7 3.7 52 278-333 71-122 (141)
186 PF14853 Fis1_TPR_C: Fis1 C-te 50.2 63 0.0014 25.0 5.9 41 318-361 4-45 (53)
187 PF04184 ST7: ST7 protein; In 49.8 48 0.001 36.7 6.9 61 279-341 261-321 (539)
188 PF02259 FAT: FAT domain; Int 49.4 71 0.0015 30.3 7.4 71 273-343 142-212 (352)
189 COG4235 Cytochrome c biogenesi 49.3 46 0.001 34.0 6.4 39 279-317 158-197 (287)
190 PF14346 DUF4398: Domain of un 49.1 74 0.0016 26.6 6.6 36 271-306 39-74 (103)
191 smart00139 MyTH4 Domain in Myo 48.9 1.2E+02 0.0026 27.4 8.4 63 321-391 52-115 (144)
192 cd02684 MIT_2 MIT: domain cont 48.9 26 0.00057 28.5 3.8 32 276-307 5-36 (75)
193 cd02678 MIT_VPS4 MIT: domain c 48.3 30 0.00065 27.7 4.0 32 276-307 5-36 (75)
194 PF07539 DRIM: Down-regulated 48.1 60 0.0013 29.5 6.4 86 327-419 11-101 (141)
195 cd02683 MIT_1 MIT: domain cont 47.8 61 0.0013 26.6 5.8 22 319-340 10-31 (77)
196 KOG0686 COP9 signalosome, subu 47.6 71 0.0015 34.7 7.7 66 248-323 127-193 (466)
197 PF04212 MIT: MIT (microtubule 46.7 37 0.00081 26.3 4.2 29 279-307 7-35 (69)
198 cd02656 MIT MIT: domain contai 46.6 37 0.0008 26.8 4.3 32 276-307 5-36 (75)
199 PF15015 NYD-SP12_N: Spermatog 46.4 47 0.001 36.4 6.2 72 266-337 165-250 (569)
200 KOG2053 Mitochondrial inherita 45.7 92 0.002 36.6 8.6 61 284-349 50-112 (932)
201 PF06957 COPI_C: Coatomer (COP 45.3 1.2E+02 0.0026 32.6 9.0 40 271-310 198-237 (422)
202 PLN03077 Protein ECB2; Provisi 44.9 86 0.0019 34.8 8.2 56 289-346 601-656 (857)
203 KOG0550 Molecular chaperone (D 44.8 2E+02 0.0043 31.6 10.4 50 279-330 323-372 (486)
204 KOG2183 Prolylcarboxypeptidase 44.3 8.7 0.00019 41.5 0.5 28 204-231 381-409 (492)
205 PF12348 CLASP_N: CLASP N term 43.5 54 0.0012 30.0 5.4 46 316-361 150-205 (228)
206 PF15469 Sec5: Exocyst complex 43.4 2.4E+02 0.0051 25.7 9.5 86 245-345 67-152 (182)
207 KOG2003 TPR repeat-containing 43.3 38 0.00083 37.6 5.0 75 283-361 496-572 (840)
208 smart00745 MIT Microtubule Int 43.3 42 0.0009 26.4 4.1 31 277-307 8-38 (77)
209 PF12606 RELT: Tumour necrosis 43.3 10 0.00022 29.7 0.6 14 410-423 1-14 (50)
210 KOG1130 Predicted G-alpha GTPa 43.2 38 0.00083 37.2 5.0 60 275-334 15-74 (639)
211 PF04212 MIT: MIT (microtubule 43.1 41 0.00089 26.1 4.0 24 317-340 7-30 (69)
212 KOG0547 Translocase of outer m 43.0 1.7E+02 0.0036 32.9 9.7 91 267-361 316-408 (606)
213 cd02681 MIT_calpain7_1 MIT: do 42.2 44 0.00095 27.7 4.2 32 276-307 5-36 (76)
214 TIGR02972 TMAO_torE trimethyla 41.9 30 0.00065 27.0 2.9 21 406-426 11-31 (47)
215 cd02679 MIT_spastin MIT: domai 41.1 30 0.00066 29.0 3.1 26 318-343 11-36 (79)
216 PLN03098 LPA1 LOW PSII ACCUMUL 39.7 68 0.0015 34.8 6.2 87 249-342 86-172 (453)
217 PF06796 NapE: Periplasmic nit 39.6 35 0.00076 27.4 3.1 22 406-427 19-40 (56)
218 KOG2047 mRNA splicing factor [ 39.2 3.7E+02 0.0081 31.3 11.8 88 254-343 527-614 (835)
219 PF05168 HEPN: HEPN domain; I 39.0 1.9E+02 0.0042 23.1 7.4 34 274-307 5-38 (118)
220 KOG1105 Transcription elongati 38.8 98 0.0021 31.9 6.9 39 325-363 39-77 (296)
221 smart00745 MIT Microtubule Int 38.8 37 0.00081 26.6 3.2 22 319-340 12-33 (77)
222 PF02561 FliS: Flagellar prote 38.6 1.5E+02 0.0034 25.5 7.2 55 274-328 26-85 (122)
223 KOG4340 Uncharacterized conser 38.6 41 0.00089 35.7 4.2 69 280-352 147-220 (459)
224 TIGR02973 nitrate_rd_NapE peri 38.3 38 0.00083 25.9 2.9 21 406-426 6-26 (42)
225 PRK14970 DNA polymerase III su 38.2 3.9E+02 0.0085 26.7 10.9 95 253-356 171-278 (367)
226 COG3629 DnrI DNA-binding trans 37.9 4.6E+02 0.0099 26.8 12.7 70 282-355 158-235 (280)
227 KOG1125 TPR repeat-containing 37.7 82 0.0018 35.2 6.5 67 279-345 287-384 (579)
228 TIGR03362 VI_chp_7 type VI sec 37.5 88 0.0019 31.8 6.3 64 277-342 213-277 (301)
229 KOG4814 Uncharacterized conser 37.1 96 0.0021 35.7 7.0 121 218-345 301-424 (872)
230 KOG1155 Anaphase-promoting com 36.5 1.2E+02 0.0026 33.8 7.3 76 280-357 469-547 (559)
231 PF10938 YfdX: YfdX protein; 36.5 70 0.0015 29.4 5.0 70 242-311 70-151 (155)
232 cd02680 MIT_calpain7_2 MIT: do 36.3 47 0.001 27.6 3.5 34 276-309 5-38 (75)
233 COG5010 TadD Flp pilus assembl 36.1 1.4E+02 0.003 30.4 7.3 65 278-346 135-199 (257)
234 TIGR00756 PPR pentatricopeptid 35.9 54 0.0012 20.4 3.1 23 321-343 6-28 (35)
235 KOG0553 TPR repeat-containing 35.7 73 0.0016 33.0 5.4 87 240-332 83-200 (304)
236 KOG2376 Signal recognition par 35.6 4.4E+02 0.0096 30.1 11.6 94 282-384 84-181 (652)
237 cd02684 MIT_2 MIT: domain cont 35.3 1E+02 0.0022 25.2 5.2 36 320-355 11-54 (75)
238 COG4649 Uncharacterized protei 35.3 2.4E+02 0.0052 28.1 8.5 103 251-357 107-211 (221)
239 cd02678 MIT_VPS4 MIT: domain c 34.9 1.4E+02 0.0031 23.8 6.0 36 319-354 10-53 (75)
240 PF09450 DUF2019: Domain of un 34.9 53 0.0011 29.2 3.8 66 284-367 15-84 (106)
241 COG3014 Uncharacterized protei 34.7 1.1E+02 0.0023 33.0 6.6 116 268-388 49-207 (449)
242 PF10300 DUF3808: Protein of u 33.7 1.1E+02 0.0023 32.5 6.5 62 280-344 308-376 (468)
243 cd02682 MIT_AAA_Arch MIT: doma 33.7 73 0.0016 26.6 4.2 34 274-307 3-36 (75)
244 cd02683 MIT_1 MIT: domain cont 33.7 66 0.0014 26.4 3.9 31 277-307 6-36 (77)
245 COG3947 Response regulator con 33.6 84 0.0018 33.1 5.5 63 312-385 280-343 (361)
246 COG2956 Predicted N-acetylgluc 33.5 1.7E+02 0.0037 31.3 7.7 78 275-356 105-182 (389)
247 PF01535 PPR: PPR repeat; Int 32.8 57 0.0012 20.2 2.8 24 321-344 6-29 (31)
248 PRK11906 transcriptional regul 32.4 1.1E+02 0.0023 33.5 6.2 59 281-342 376-434 (458)
249 PF10516 SHNi-TPR: SHNi-TPR; 32.0 59 0.0013 23.8 3.0 26 281-306 5-30 (38)
250 PF07240 Turandot: Stress-indu 31.7 1.8E+02 0.0039 25.1 6.3 61 325-386 6-68 (85)
251 PLN02789 farnesyltranstransfer 31.7 1.9E+02 0.004 29.4 7.5 56 284-345 78-139 (320)
252 PF12862 Apc5: Anaphase-promot 31.6 2.9E+02 0.0062 22.6 7.4 69 256-324 19-90 (94)
253 COG4700 Uncharacterized protei 31.3 1.5E+02 0.0034 29.7 6.6 105 279-393 126-231 (251)
254 PF12968 DUF3856: Domain of Un 31.2 2.3E+02 0.005 26.7 7.3 60 278-337 10-77 (144)
255 cd02681 MIT_calpain7_1 MIT: do 31.1 72 0.0016 26.4 3.8 25 316-340 7-31 (76)
256 KOG0624 dsRNA-activated protei 31.0 3.8E+02 0.0082 29.3 9.8 49 253-306 53-101 (504)
257 PF13281 DUF4071: Domain of un 30.8 3E+02 0.0065 29.2 9.0 96 290-393 154-261 (374)
258 PF07219 HemY_N: HemY protein 30.6 2.1E+02 0.0046 24.3 6.7 34 273-306 55-88 (108)
259 KOG4076 Regulator of ATP-sensi 30.6 52 0.0011 30.1 3.1 41 252-298 33-73 (121)
260 PF08631 SPO22: Meiosis protei 30.3 1.8E+02 0.0039 28.2 7.0 56 250-305 218-274 (278)
261 PF08711 Med26: TFIIS helical 30.2 69 0.0015 23.8 3.3 25 339-363 26-51 (53)
262 COG4783 Putative Zn-dependent 30.2 3.3E+02 0.0071 30.1 9.4 136 248-389 275-422 (484)
263 TIGR02561 HrpB1_HrpK type III 29.5 2.2E+02 0.0047 27.0 7.0 91 270-367 40-130 (153)
264 PF09477 Type_III_YscG: Bacter 29.4 1.8E+02 0.0038 26.6 6.1 72 275-356 39-110 (116)
265 cd02656 MIT MIT: domain contai 29.0 2.1E+02 0.0045 22.5 6.0 35 320-354 11-53 (75)
266 PF00610 DEP: Domain found in 28.5 55 0.0012 25.4 2.6 35 310-344 16-51 (74)
267 KOG4563 Cell cycle-regulated h 28.4 1.1E+02 0.0023 33.0 5.3 42 273-317 37-78 (400)
268 PF09797 NatB_MDM20: N-acetylt 27.9 4.2E+02 0.0091 26.7 9.3 85 253-341 150-243 (365)
269 smart00049 DEP Domain found in 27.6 51 0.0011 25.7 2.3 35 309-344 18-52 (77)
270 PF10345 Cohesin_load: Cohesin 27.3 2.9E+02 0.0064 30.0 8.5 88 276-363 360-462 (608)
271 KOG3617 WD40 and TPR repeat-co 27.3 1.2E+02 0.0025 36.2 5.7 65 280-344 861-941 (1416)
272 smart00748 HEPN Higher Eukaryt 27.0 86 0.0019 26.1 3.6 33 275-307 2-34 (113)
273 PLN03218 maturation of RBCL 1; 26.9 3.8E+02 0.0082 31.9 9.8 54 287-343 659-712 (1060)
274 KOG1173 Anaphase-promoting com 26.0 1.2E+02 0.0026 34.1 5.4 68 280-351 458-527 (611)
275 PF05969 PSII_Ycf12: Photosyst 26.0 80 0.0017 23.1 2.8 23 407-430 10-32 (33)
276 cd03311 CIMS_C_terminal_like C 25.6 50 0.0011 32.6 2.3 54 214-272 3-56 (332)
277 PF12487 DUF3703: Protein of u 25.2 5.1E+02 0.011 23.4 8.5 47 272-318 4-50 (112)
278 PRK11906 transcriptional regul 25.0 2.2E+02 0.0048 31.1 7.0 65 280-348 341-406 (458)
279 PRK10316 hypothetical protein; 24.9 2.9E+02 0.0062 27.5 7.2 49 263-311 151-203 (209)
280 PRK06585 holA DNA polymerase I 24.3 6.9E+02 0.015 24.6 10.9 107 251-366 144-265 (343)
281 KOG0564 5,10-methylenetetrahyd 24.3 33 0.00071 38.0 0.8 92 109-222 427-518 (590)
282 PF05235 CHAD: CHAD domain; I 24.2 1.9E+02 0.0042 26.6 5.8 79 280-364 103-193 (231)
283 KOG1070 rRNA processing protei 23.8 4.4E+02 0.0096 33.1 9.6 103 255-361 1494-1614(1710)
284 cd00737 endolysin_autolysin En 23.5 4.9E+02 0.011 22.6 8.0 71 228-298 28-110 (133)
285 cd02677 MIT_SNX15 MIT: domain 23.4 1.1E+02 0.0025 25.0 3.6 28 280-307 9-36 (75)
286 TIGR02710 CRISPR-associated pr 23.0 2.5E+02 0.0053 29.9 6.8 65 275-340 128-196 (380)
287 KOG2709 Uncharacterized conser 22.7 66 0.0014 35.3 2.6 29 316-344 23-51 (560)
288 TIGR03504 FimV_Cterm FimV C-te 22.4 1.1E+02 0.0023 23.0 3.0 26 280-305 2-27 (44)
289 PF13646 HEAT_2: HEAT repeats; 22.0 3.5E+02 0.0076 20.6 6.0 28 331-358 29-56 (88)
290 cd04444 DEP_PLEK2 DEP (Disheve 21.9 1.3E+02 0.0028 27.0 3.9 69 310-387 30-102 (109)
291 PF11817 Foie-gras_1: Foie gra 21.7 2.1E+02 0.0046 27.4 5.7 48 295-342 156-205 (247)
292 PF00244 14-3-3: 14-3-3 protei 21.4 2.3E+02 0.005 27.5 5.8 47 294-340 143-194 (236)
293 PF02184 HAT: HAT (Half-A-TPR) 21.2 86 0.0019 22.7 2.2 19 331-349 3-22 (32)
294 KOG1156 N-terminal acetyltrans 21.1 1.2E+02 0.0025 34.7 4.2 58 280-341 10-67 (700)
295 TIGR00847 ccoS cytochrome oxid 21.1 1.4E+02 0.003 23.5 3.5 25 406-430 6-30 (51)
296 PF13041 PPR_2: PPR repeat fam 21.0 1.2E+02 0.0025 21.7 2.9 21 324-344 12-32 (50)
297 PF08969 USP8_dimer: USP8 dime 20.9 1.4E+02 0.003 25.5 3.9 33 275-307 36-68 (115)
298 KOG3807 Predicted membrane pro 20.8 2.5E+02 0.0055 30.5 6.4 49 311-359 271-320 (556)
299 PRK14961 DNA polymerase III su 20.6 9E+02 0.02 24.6 10.5 121 257-388 186-320 (363)
300 PF12569 NARP1: NMDA receptor- 20.4 9.2E+02 0.02 26.5 10.6 89 250-343 158-256 (517)
301 PF01024 Colicin: Colicin pore 20.3 75 0.0016 30.8 2.3 29 328-356 50-78 (187)
302 PRK04778 septation ring format 20.2 5.8E+02 0.012 27.9 9.1 110 248-357 146-262 (569)
303 PRK09121 5-methyltetrahydropte 20.0 70 0.0015 32.5 2.2 53 214-271 6-58 (339)
No 1
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.16 E-value=8.4e-06 Score=60.41 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
|..|..+++.|+|.+|+..|+.++..-+. ..++.++|+.||...|+.++|+.+|+++. ..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 67899999999999999999999988854 78999999999999999999999999984 5664
No 2
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=2.1e-05 Score=58.22 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=52.1
Q ss_pred HHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHHH
Q 013954 287 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALVS 350 (433)
Q Consensus 287 amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eVr 350 (433)
||+.|+|.+|+.+|+++++.-|. ..++.+.|+.||-..|+.++|+.+++++. .+|+ +.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 68999999999999999999876 45788899999999999999999999996 7888 4443
No 3
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.00012 Score=57.53 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 354 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 354 (433)
.+..+..|..++..|+|.+|+.+|+.++..-+... .-..+.+.++.||...|+.++|+.+|+++. .+|+.....+|.
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 34466778888888888888888888776654332 224556677777788888888888888774 577777766663
No 4
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.82 E-value=0.00011 Score=66.94 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 353 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 353 (433)
..+..|+.|..+|+.|+|.+|+..|+++.+.-| .|.+...+++|++.||-..|+.++|+..|+++. .||+..-...|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 356799999999999999999999999998865 488999999999999999999999999999974 79987643333
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00018 Score=56.49 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+..|..|..++..|+|.+|+.+|++++..-+ .+...-.+.++++.||...|+.++|+.+|+++. .+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP-KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 35679999999999999999999999987754 334456889999999999999999999999986 46763
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00016 Score=53.79 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-RPKEARIMYEKLQ 342 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-R~~EAiaLYkkL~ 342 (433)
++..+..|..++..|+|.+|+.+|++|++.-+. ...+..+++.||...| +.++|+..|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 456788999999999999999999999998754 4568899999999999 7999999999864
No 7
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.64 E-value=0.00041 Score=67.28 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
+..+.+.+|++=+ ...|.-.......|..|..++..|+|.+|+.+|+++++.-+ .+..-.++-+.++.||...|+.+
T Consensus 158 ~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 158 RQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHH
Confidence 3444444443222 22355444445679999999999999999999999998875 56777889999999999999999
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHh
Q 013954 333 EARIMYEKLQ-SHPNALVSKRARQFM 357 (433)
Q Consensus 333 EAiaLYkkL~-sHP~~eVrKQAkrLl 357 (433)
+|+.+|+++. .||+..-.++|++.|
T Consensus 235 ~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999996 799999999998776
No 8
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.46 E-value=0.00051 Score=62.36 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
.++.|+.|+.+|+.|+|.+|+..||.+.+.-|+ ++..-.++|||+-||=..++.++|++-|++.. -||.-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 356899999999999999999999999998877 47788999999999999999999999999996 476544
No 9
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.44 E-value=0.00062 Score=51.96 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
+......|..++..|+|.+|+.+|++|++....-..-+ +.+-..++.||...|+.++|+.+|++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456789999999999999999999998742211122 566667999999999999999999985
No 10
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.0044 Score=53.20 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=62.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 346 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 346 (433)
|...-.....|..++.+|+.|+|.+|+..|+++++.. ....+.-.+.+.||.||-..|+.++|+.+++++..++.
T Consensus 42 ~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~ 116 (145)
T PF09976_consen 42 PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF 116 (145)
T ss_pred CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch
Confidence 3444455668888999999999999999999999977 55588889999999999999999999999988654443
No 11
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.00095 Score=63.52 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
..++.|..|..+|+.|+|.+|+..||++.+.-+ .|.+.-.+.+|++.||=..++.++|+..|++.. .||+-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 455689999999999999999999999998666 558888899999999999999999999999995 677664
No 12
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.0015 Score=57.02 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 354 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 354 (433)
.|+.+..+...|+..+|+++|++|+.. .......-.+.|+|+.+|..+||.++|+++-++.. .||..+.....+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 567777777888888888888888774 23333444677788888888888888888888875 578766655444
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.18 E-value=0.0029 Score=51.93 Aligned_cols=76 Identities=14% Similarity=-0.006 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH----HHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV----SKRAR 354 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV----rKQAk 354 (433)
.+..|..++..|++.+|+..|+.+++.-+. ...+...+++||...|+.++|+..|++.. .+|+... .+++.
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDPD----DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 456688888889999999999988776543 35666888899999999999999998885 5666544 55566
Q ss_pred HHhhH
Q 013954 355 QFMFS 359 (433)
Q Consensus 355 rLlyi 359 (433)
.+++.
T Consensus 130 ~~~~~ 134 (135)
T TIGR02552 130 AMLES 134 (135)
T ss_pred HHHhc
Confidence 66554
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.18 E-value=0.0014 Score=58.94 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=64.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
|.-....+..|..|..++..|+|.+|+..|++++..-+ .+...-.+.+.++.||.+.|+.++|+..|+++. .||+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 33445666789999999999999999999999988765 344566788999999999999999999999995 677544
No 15
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0027 Score=47.58 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=58.9
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHh
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFM 357 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLl 357 (433)
...++.+++|.+|+..++.++..-|... ...+.+++||-..|+.++|+..+++.. .+|+.....+++++|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 3568999999999999999999976633 344558999999999999999999985 799888888877765
No 16
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.06 E-value=0.0056 Score=53.28 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
...+..+.+..|+.- +.++|..- +..+..|..++..|+|.+|+..|+.|+.+-+. ...+...|+.||...|
T Consensus 36 ~~g~~~~A~~~~~~a--l~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 36 QEGDYSRAVIDFSWL--VMAQPWSW---RAHIALAGTWMMLKEYTTAINFYGHALMLDAS----HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HcCCHHHHHHHHHHH--HHcCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHcC
Confidence 344455566666654 35556543 33577899999999999999999999986543 4677888999999999
Q ss_pred ChHHHHHHHHHHh-cCCCH----HHHHHHHHHh
Q 013954 330 RPKEARIMYEKLQ-SHPNA----LVSKRARQFM 357 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~~----eVrKQAkrLl 357 (433)
|.++|+..|++.. ..|+- .++.++++++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999975 45544 5666666554
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.03 E-value=0.0023 Score=44.71 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+..|..++..|++.+|+..|+.++...+... .+.++++.||-..++.++|+.+|+++. .+|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46678888889999999999999887765443 677888888988899999999998874 44443
No 18
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.02 E-value=0.0072 Score=54.43 Aligned_cols=65 Identities=15% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
.+..|..++.+|+|.+|+..|+.+++..+. +...-++.+.++.+|..+|+.++|+.++++|. +||
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 357789999999999999999999988765 34556888999999999999999999999996 677
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.90 E-value=0.011 Score=41.37 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
+..+.+..+++-. .+.|... ...+..|..++..|++.+|+.+|+.++...+... .+...++.+|...|+.+
T Consensus 15 ~~~~A~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 15 DYDEALEYYEKAL--ELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYE 85 (100)
T ss_pred cHHHHHHHHHHHH--hcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHH
Confidence 3444444454433 2333332 4467789999999999999999999998765544 77788999999999999
Q ss_pred HHHHHHHHHh-cCC
Q 013954 333 EARIMYEKLQ-SHP 345 (433)
Q Consensus 333 EAiaLYkkL~-sHP 345 (433)
+|+..++++. .+|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 9999999985 455
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.77 E-value=0.0029 Score=49.45 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.|+|+.|+.+||++.+.-+.++ -..+.+++|.||=..|+.++|+.+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~ 51 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL 51 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4556666666666555555432 3334444466666666666666666553
No 21
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.016 Score=50.72 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 334 (433)
.+.+.-|++-.-..++.. ...+..+..|..+..-|+|.+|+..|++++...+. ..+.+.++..+|+|+-+.||++||
T Consensus 18 ~~Ai~~Y~~Al~~gL~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 18 EEAIPLYRRALAAGLSGA--DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHH
Confidence 455667776655555544 33457889999999999999999999999886643 457888999999999999999999
Q ss_pred HHHHHHHh
Q 013954 335 RIMYEKLQ 342 (433)
Q Consensus 335 iaLYkkL~ 342 (433)
+.+.-.+.
T Consensus 95 l~~~l~~l 102 (120)
T PF12688_consen 95 LEWLLEAL 102 (120)
T ss_pred HHHHHHHH
Confidence 99987653
No 22
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0067 Score=65.96 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-----------HHHHHHHHHHHHhcCChHHH
Q 013954 267 LNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 267 l~Vdp~~k-~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EA 334 (433)
+..-|++- ..-+..|..+-.+.++|+|.+|++.||+|+..|-..-..+ --+.+|||-+|+-+|+++||
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34445533 3667899999999999999999999999977664443333 25678999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 013954 335 RIMYEKLQSHPNAL 348 (433)
Q Consensus 335 iaLYkkL~sHP~~e 348 (433)
.++|..+.+|-..+
T Consensus 244 ~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 244 SSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999998654444
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.60 E-value=0.014 Score=58.19 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHH
Q 013954 243 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS 322 (433)
Q Consensus 243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLA 322 (433)
.+-..+-+..+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+..|++|+.+-+. ...+.+.++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al--~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI--DLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKG 77 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHH
Confidence 44455777888889999998665 45554 2566788899999999999999999999998653 467889999
Q ss_pred HHHHhcCChHHHHHHHHHHh-cCCC-HHHHHHHHHH
Q 013954 323 ICQDSLHRPKEARIMYEKLQ-SHPN-ALVSKRARQF 356 (433)
Q Consensus 323 iAydA~GR~~EAiaLYkkL~-sHP~-~eVrKQAkrL 356 (433)
.||..+|+.++|+..|+++. .+|+ ..+...-+++
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999985 5665 4444443333
No 24
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.57 E-value=0.011 Score=58.92 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
.+.+..|..+|..|+|.+|+++|++|+.+-+... .+.+.++.||..+|+.++|+..|+++. ..|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4577889999999999999999999999877653 567889999999999999999999996 455
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.56 E-value=0.0059 Score=53.14 Aligned_cols=63 Identities=11% Similarity=0.016 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..++..|+|.+|+.+|..++..=+.. ..+.+.++.|+...||.++|+..|++.. -.|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567999999999999999999998876554 4667889999999999999999999985 4553
No 26
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.052 Score=46.09 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc-----chHHHHHHHH-----HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHH
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDP-----KLKSECEKAL-----KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 317 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp-----~~k~e~eea~-----~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGea 317 (433)
..+....++.|+-|+...=-+++. .....+++.+ +.+..+.+.|++.+|+..++.++..=|.+- .+
T Consensus 23 ~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E----~~ 98 (146)
T PF03704_consen 23 EEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE----EA 98 (146)
T ss_dssp HHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H----HH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH----HH
Confidence 445566778888888776555444 1223333322 336678889999999999999999987654 55
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh--------cCCCHHHHHHHHHHh
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKLQ--------SHPNALVSKRARQFM 357 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL~--------sHP~~eVrKQAkrLl 357 (433)
..+|..||-+.||+.+|+..|++++ ..|+++++.-.++||
T Consensus 99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~il 146 (146)
T PF03704_consen 99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREIL 146 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHhC
Confidence 6678899999999999999999884 358888888777664
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.47 E-value=0.006 Score=47.69 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
...-.|..|..+|..|+|.+|++.|++ ..+.. -.-.+.+.+|.||-.+|+.+|||..+++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~~---~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLDP---SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHHH---CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCCC---CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 334567789999999999999999988 22222 2256777789999999999999999976
No 28
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.39 E-value=0.024 Score=49.48 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
...++...+..|..++..|+|.+|+.+|++|+...+. +..-..+...+++||...|++++|+..|++.. .+|..
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 3456777889999999999999999999999987542 32234577789999999999999999999975 45654
No 29
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.35 E-value=0.055 Score=57.37 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 344 (433)
++..+..|..++..|+|.+|+..|++|+++-+-.-. .-.+..+++.||-.+|+.+||++.|++-...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344788899999999999999999999999764311 1134789999999999999999999998654
No 30
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.31 E-value=0.041 Score=52.03 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.-....|..+++.|++.+|+.+|++++...+....+.....+.++.+|-..|+.++|+.+|+++.
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34566799999999999999999999998876556666667779999999999999999999974
No 31
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.04 Score=55.82 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------------------HHHHHHH
Q 013954 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQW 321 (433)
Q Consensus 272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------------------GeaqLwL 321 (433)
+.++.+++.=.+|..+|+.++|++||..|.+|+.+.|.+-.+. -++-.-|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4778888888889999999999999999999999987764443 1333346
Q ss_pred HHHHHhcCChHHHHHHHHHH-hcCCCHHHHHH
Q 013954 322 SICQDSLHRPKEARIMYEKL-QSHPNALVSKR 352 (433)
Q Consensus 322 AiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQ 352 (433)
-+||=+.|++++|+.-|+|- .--|+-++=|.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 67777788888888777774 46777765554
No 32
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.19 E-value=0.0061 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++.++++.||...|+.++|+..|++|. .||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 478899999999999999999999996 7886
No 33
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.15 E-value=0.063 Score=47.27 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..+...+..|..++..|+|.+|+.+|++|++.-+... -.+.+...++.||...|+.++|+..|++.. .||+-
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5556678999999999999999999999987643321 135688889999999999999999999985 57754
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.14 E-value=0.048 Score=44.78 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 267 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 267 l~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
+.++|+.. ...+..|..++..|+|.+|+..|+++.+.-+.. ..+...++.||-..|++++|+.+|+++. .+|
T Consensus 10 l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 10 LGLDSEQL---EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HcCChhhH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556543 447889999999999999999999998876543 4677789999999999999999999995 566
Q ss_pred C
Q 013954 346 N 346 (433)
Q Consensus 346 ~ 346 (433)
.
T Consensus 83 ~ 83 (135)
T TIGR02552 83 D 83 (135)
T ss_pred C
Confidence 4
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.11 E-value=0.017 Score=63.47 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------------------HHHHHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQD 326 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAyd 326 (433)
.+..+-.|..++.+|.|.+|..+|+.++++.|-..... ..+++.+|+|++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 34456667777888888888888888777776655332 578889999999
Q ss_pred hcCChHHHHHHHHHHh-cCCC
Q 013954 327 SLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 327 A~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+|+++||+++|+++. .||+
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCC
Confidence 9999999999999997 6776
No 36
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.10 E-value=0.031 Score=54.45 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHHH-HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 278 EKALKDGDSL-MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 278 eea~~~Gk~a-merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+..|..+..+ +..|+|.+|+..|++.++.-| +|.+-..+.+||+.+|-..|+.++|+..|+++. .||.-.-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 4467788776 778999999999999998886 466778999999999999999999999999996 6886543
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.09 E-value=0.067 Score=49.34 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHH-HhcCC--
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ-DSLHR-- 330 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAy-dA~GR-- 330 (433)
..+.+..++... ..+|..-+ .-+..|..++..|+|.+|+..|++|+.+-+.+. .+.+.+|+|+ ...|+
T Consensus 55 ~~~~i~~l~~~L--~~~P~~~~---~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 55 PEAQLQALQDKI--RANPQNSE---QWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHM 125 (198)
T ss_pred HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCC
Confidence 345555665444 33344332 345567777788888888888888777766543 3334445542 44555
Q ss_pred hHHHHHHHHHH
Q 013954 331 PKEARIMYEKL 341 (433)
Q Consensus 331 ~~EAiaLYkkL 341 (433)
.++|+.++++.
T Consensus 126 ~~~A~~~l~~a 136 (198)
T PRK10370 126 TPQTREMIDKA 136 (198)
T ss_pred cHHHHHHHHHH
Confidence 35555555555
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.08 E-value=0.02 Score=59.97 Aligned_cols=59 Identities=8% Similarity=-0.100 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
-+..|..++..|+|.+|++.+++|+++-+.. -.+...++.||..+|+.++|+.-|.++.
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666666666666666666654332 2445556666666666666666665553
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.99 E-value=0.044 Score=46.11 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..+.+-. ..+|. .....+..|..++..|++.+|+.+|+++++.-+. .+.+...++.+|-..|+.
T Consensus 45 ~~~~~A~~~~~~~l--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 45 GDLEVAKENLDKAL--EHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred CCHHHHHHHHHHHH--HhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccH
Confidence 34455555555443 23332 2344556688888999999999999998887543 345777888899999999
Q ss_pred HHHHHHHHHHhcCC
Q 013954 332 KEARIMYEKLQSHP 345 (433)
Q Consensus 332 ~EAiaLYkkL~sHP 345 (433)
++|+.+|++...++
T Consensus 116 ~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 116 EQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987543
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.93 E-value=0.046 Score=60.12 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 327 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 327 (433)
..|..+..+.|..++.-. ..+|.. ....+..|..+.+-|+|.+|++.|++++..-+ ---.+.++|+.+|.-
T Consensus 130 L~~~~~~eeA~~~~~~~l--~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p----~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYF--SGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQHP----EFENGYVGWAQSLTR 200 (694)
T ss_pred HHHhccHHHHHHHHHHHh--hcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHH
Confidence 345666677777776444 444443 33477889999999999999999999998322 224788999999999
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 013954 328 LHRPKEARIMYEKLQSHPNALVSKRARQFMF 358 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 358 (433)
.|+.++|.+.|++..-+-...++|-++.+.-
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVD 231 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence 9999999999999987666677776766543
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.87 E-value=0.11 Score=44.72 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR 352 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ 352 (433)
..++...|+....++..|.+..+-..++..... ..+|.....+.|.+|.++-..|+.++|+..|+++. .+|++.++..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 456778899999999999999998888887775 56677999999999999999999999999999996 5688888877
Q ss_pred HH
Q 013954 353 AR 354 (433)
Q Consensus 353 Ak 354 (433)
|+
T Consensus 87 a~ 88 (145)
T PF09976_consen 87 AR 88 (145)
T ss_pred HH
Confidence 74
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.59 E-value=0.11 Score=52.83 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-..+.-++ ...+..+..+...|++.+|+..|+++++..+.. -.+...++.+|...|+.
T Consensus 717 g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDY 786 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCH
Confidence 34445555555544333222 234556777788888888888888887776543 36777888888888888
Q ss_pred HHHHHHHHHHh-cCCCHH
Q 013954 332 KEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 332 ~EAiaLYkkL~-sHP~~e 348 (433)
++|+.+|+++. .+|+..
T Consensus 787 ~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 88888888884 677643
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.57 E-value=0.12 Score=43.45 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
...+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.++++...
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667889999999999999999998876543 45677889999999999999999998864
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.57 E-value=0.041 Score=50.95 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+..+..|.-|-.+|+.|+|.+|...|+..+..=+-+.+ --+-|++|+++.|+.++||..|.+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455667999999999999999999999998776655443 35679999999999999999999874
No 45
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.50 E-value=0.3 Score=46.68 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC-
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR- 330 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR- 330 (433)
.+..+.+..|++=. +..|......+..|..|..+|..|+|.+|+.+|+..+..-|..... ..|...+++|+..+++
T Consensus 46 g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 46 GNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDS 122 (243)
T ss_pred CCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchh
Confidence 34445555555433 3456666666668999999999999999999999999988777655 7888899999766652
Q ss_pred -----------------hHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHH---HHHhhhhcccCCCCcchHHHHHHhhccc
Q 013954 331 -----------------PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDK 389 (433)
Q Consensus 331 -----------------~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~af~~~k 389 (433)
..+|+..+++|. .||+-+-...|++.|--+. |-.=+-|...|.+...|..=...|..==
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 368999999996 8999999999987665554 2222345555666556643222222223
Q ss_pred ccccCcc
Q 013954 390 TNYPLQE 396 (433)
Q Consensus 390 ~~y~~~e 396 (433)
.+||.+.
T Consensus 203 ~~Yp~t~ 209 (243)
T PRK10866 203 RDYPDTQ 209 (243)
T ss_pred HHCCCCc
Confidence 4566554
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.46 E-value=0.062 Score=56.39 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..++..|+|.+|+..|++|+++-+.+ ..+.++|+.+|...|+.++|+.+|++.. .+|+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4455677777777777777777777665433 2445567777777777777777777653 4554
No 47
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.37 E-value=0.056 Score=51.78 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc--CCCHHHHH
Q 013954 277 CEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--HPNALVSK 351 (433)
Q Consensus 277 ~eea~~~Gk~amer-GkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--HP~~eVrK 351 (433)
++...+.|..+.+. |+|.+|+++|++|++.... .+.....+.+++|.+|-.+|+.++|+.+|+++.. .-+...+=
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 33444557777788 8999999999999988543 4456678888999999999999999999999963 23333455
Q ss_pred HHHHHhh
Q 013954 352 RARQFMF 358 (433)
Q Consensus 352 QAkrLly 358 (433)
.++++.+
T Consensus 194 ~~~~~~l 200 (282)
T PF14938_consen 194 SAKEYFL 200 (282)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6666443
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.23 E-value=0.32 Score=46.58 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+..|..+++.|++.+|+.+|++++...+. ...+.+.++.+|...|+.++|+.+|+++.
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQ----CVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566667777777777777777665432 23566667777777777777777777765
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.02 E-value=0.17 Score=48.82 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHH
Q 013954 256 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 335 (433)
Q Consensus 256 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 335 (433)
+.+..|.+-. .++|..- ..-+..|..++..|+|.+|++.|++|+++-|.. ..+.+.+++||-..||.++|+
T Consensus 82 ~A~~~~~~Al--~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 82 LARNDFSQAL--ALRPDMA---DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHHHHHH--HcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence 3344554443 3455442 345778999999999999999999999876543 457888999999999999999
Q ss_pred HHHHHHh-cCCCHH
Q 013954 336 IMYEKLQ-SHPNAL 348 (433)
Q Consensus 336 aLYkkL~-sHP~~e 348 (433)
..|++.. .+|+.-
T Consensus 153 ~~~~~al~~~P~~~ 166 (296)
T PRK11189 153 DDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCH
Confidence 9999974 688654
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.97 E-value=0.14 Score=55.25 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..+..|..++..|++.+|+.+|++|++.-+. ...+..+|+.+|...|+.++|++.|+++. .||+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3556699999999999999999999987544 35677889999999999999999999986 67864
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=94.96 E-value=0.14 Score=53.74 Aligned_cols=62 Identities=6% Similarity=-0.131 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
+..|..++..|++.+|+.+|++|+++-|.... +..+++.+|-..||.++|+..|++.. -+|.
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34578888999999999999999988766543 55778889999999999999999974 5665
No 52
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.80 E-value=0.11 Score=52.80 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
...+..|+.++..|+|.+|+..|++++..-+. ..++...++.+|...|+.++|+..|+++.
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677777777777777777777654332 44566667777777777777777777764
No 53
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.12 Score=52.43 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..++.+.+++.+++.|++.+|.+.|-.|++..+.+ +++.+-||.||-+.|+.++|.+++.+|-
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 66779999999999999999999999999999877 7899999999999999999999999984
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.77 E-value=0.09 Score=52.78 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
-.+..|+.++..|++.+|..+||++++.-|. -.+.++|+.+|++.|++++|..+|++=
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677899999999999999999999987543 345689999999999999999999964
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.76 E-value=0.085 Score=49.34 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+.-+..+.+..|++- +.++|..... ....+..+.+.|++.++.+.++......+.+..+. ..++.||..+
T Consensus 157 ~~~G~~~~A~~~~~~a--l~~~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~----~~la~~~~~l 227 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKA--LELDPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW----DALAAAYLQL 227 (280)
T ss_dssp HHCCHHHHHHHHHHHH--HHH-TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC----HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH--HHcCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH----HHHHHHhccc
Confidence 3444566777777754 4666765443 33457788999999998888888777776666654 4569999999
Q ss_pred CChHHHHHHHHHHh-cCC-CHHHHHHHHHH
Q 013954 329 HRPKEARIMYEKLQ-SHP-NALVSKRARQF 356 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP-~~eVrKQAkrL 356 (433)
|+.++|+.+|+++. .|| ++.+...=..+
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc
Confidence 99999999999996 477 56655443333
No 56
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.44 E-value=0.34 Score=51.61 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 358 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 358 (433)
|-.+.-+|++.+|..+|++|+++-+ + -++-+.++.+|+..||.++|++.|++- .-.|...+.-..++|.|
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF 497 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence 5556678999999999999999885 3 357888999999999999999999876 46888777777777765
No 57
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.43 E-value=0.088 Score=39.39 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF 358 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly 358 (433)
.|.||-+|-.+|+.+.|+.+-+.+..+.+...+.+|+.||=
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999973
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.42 E-value=0.29 Score=45.78 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
....++.+.|....... .......--+..|..+...|+..+|+..|++|+.+-|.++.+ ...|+.++-..
T Consensus 124 ~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~----~~~l~~~li~~ 193 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA----RNALAWLLIDM 193 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH----HHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHC
Confidence 34455555666654222 122334446677899999999999999999999999887653 45566677788
Q ss_pred CChHHHHHHHHHHhc-C-CCHHHHHHHHHHhhHH
Q 013954 329 HRPKEARIMYEKLQS-H-PNALVSKRARQFMFSF 360 (433)
Q Consensus 329 GR~~EAiaLYkkL~s-H-P~~eVrKQAkrLlyiL 360 (433)
|+.++|+.+++.+.. . .++.+...=....+.+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 999998888888852 2 3444544333333333
No 59
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.41 E-value=0.34 Score=44.46 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC-----------ChHHHHHHHH
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----------RPKEARIMYE 339 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----------R~~EAiaLYk 339 (433)
|...-.-+..|..|...+..|+|.+|+..|+..++.-|... .-..+..++++|+-... ...+|+..++
T Consensus 36 P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~ 114 (203)
T PF13525_consen 36 PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE 114 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence 44444455678999999999999999999999998776654 55789999999875443 3458999999
Q ss_pred HHh-cCCCHHHHHHHHHHhhHHH---HHHhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013954 340 KLQ-SHPNALVSKRARQFMFSFQ---AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE 396 (433)
Q Consensus 340 kL~-sHP~~eVrKQAkrLlyiLE---Ap~llKv~~~~~~~t~Yd~Yf~af~~~k~~y~~~e 396 (433)
.|. ++|+-.-...|++.|--+. |-.-+.|...|.+...|..=-.-+..=-.+||.+.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 995 8999999999988766655 34444455556666666542222222233455444
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=94.38 E-value=0.55 Score=49.32 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
...+..+.++.|++-. .++|..-. ..+..|..++..|++.+|+.+|++|+.+-|.... +.++++.++-..|
T Consensus 350 ~~g~~~~A~~~~~~Al--~l~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g 420 (553)
T PRK12370 350 IHSEYIVGSLLFKQAN--LLSPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHT 420 (553)
T ss_pred HccCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcc
Confidence 4456778888887655 45565433 2466789999999999999999999888776432 2233333344467
Q ss_pred ChHHHHHHHHHHh
Q 013954 330 RPKEARIMYEKLQ 342 (433)
Q Consensus 330 R~~EAiaLYkkL~ 342 (433)
+.++|++.|+++.
T Consensus 421 ~~eeA~~~~~~~l 433 (553)
T PRK12370 421 GIDDAIRLGDELR 433 (553)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777763
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.33 E-value=0.31 Score=42.58 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHH-----
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQD----- 326 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAyd----- 326 (433)
.+..+.+..|++-..+.-++. ......+..|..++..|++.+|+.+|++|+..-+.. +.....++.+|-
T Consensus 49 g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQ 122 (168)
T ss_pred CCHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHH
Confidence 345567777877766654443 233356778999999999999999999999874433 455667777777
Q ss_pred --hcCChHHHHHHHH
Q 013954 327 --SLHRPKEARIMYE 339 (433)
Q Consensus 327 --A~GR~~EAiaLYk 339 (433)
..|+.++|+..|+
T Consensus 123 ~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 123 AIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHcccHHHHHHHHH
Confidence 7778775555554
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.92 E-value=0.42 Score=54.55 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..+..|..++..|+|.+|+.+|++|++.-+... .+.+.|+.+|...|+.++|+..|+++. .+|+-
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345679999999999999999999999876443 577789999999999999999999975 56664
No 63
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.90 E-value=0.1 Score=37.07 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
++.+.||.+|...|+.++|+.+|+++. .||+-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999995 68864
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.86 E-value=0.45 Score=41.93 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
+..+.+.-|++-..+.-++. ......+..|..++..|+|.+|+.+|++|+..-+.. ......++.||...|+..
T Consensus 50 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKA 123 (172)
T ss_pred CHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChH
Confidence 33444555554443332322 223456788999999999999999999999986554 344556788888877743
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.83 E-value=0.95 Score=43.41 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+..|..++..|+|.+|+.+|++++..-......-..+...|+.+|...|+.++|+.+|+++.
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455556666666666666655543211111122344455555555566666666555554
No 66
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=0.53 Score=46.94 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 354 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 354 (433)
.....|=.|+..|.+|+|.+|-..|..+....+-. .--=++-|-|++|+..+|++++|.+.|++|. +.|.-.--++|+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 33445566999999999999999999998866544 4445778899999999999999999999995 799999888888
Q ss_pred HHh
Q 013954 355 QFM 357 (433)
Q Consensus 355 rLl 357 (433)
.-+
T Consensus 256 ~~~ 258 (262)
T COG1729 256 VAL 258 (262)
T ss_pred HHH
Confidence 654
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.54 E-value=0.34 Score=55.30 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
...|..++..|++.+|+..|++|+..-|... .+.+.|+.+|...|+.++|+++|+++. .+|+-.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4568889999999999999999998876543 467899999999999999999999985 588543
No 68
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.24 Score=51.98 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-----------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-----------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
+.+...=..|..+|.+|+|..|...||+|+..+....-.- =-+-+.||+||--+++..+||..|.+.-.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3344444569999999999999999999988887332221 23557899999999999999999999876
Q ss_pred CCCHHHH
Q 013954 344 HPNALVS 350 (433)
Q Consensus 344 HP~~eVr 350 (433)
|-..+++
T Consensus 286 ~~~~N~K 292 (397)
T KOG0543|consen 286 LDPNNVK 292 (397)
T ss_pred cCCCchh
Confidence 6555554
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=93.33 E-value=0.22 Score=46.60 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..+.-+..|..|-.+|..|+|.+|..+|.-.+-.=.-+.+. .|-|+.|++..+++++|+.+|---
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y----~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY----TMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999999999999998765544444443 566777888888888888777654
No 70
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.32 E-value=0.18 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
+--+..|..+|..|+|.+|+.+|++|+.+-+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3456778888888888888888888887654
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.72 E-value=0.71 Score=52.96 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
|..+.+.|++.+|+.+|++|++.-|.. .++...+++||...|+.++|++.|++.. -.|+
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 444444455555555555554443322 3455556666666666666666666653 3443
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=0.25 Score=53.58 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC-----------
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP----------- 345 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP----------- 345 (433)
.+.=..|...|..|+|.+|+.+|..|+++++--..+ --..|-||+++|..++-+.+|.+- .-.|
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 334456999999999999999999999999874211 112567777777777777776553 2232
Q ss_pred -------------------------CHHHHHHHHHHhhHHHHHHhhh--hcc---c-CCCCcchHHHHHHhhcc
Q 013954 346 -------------------------NALVSKRARQFMFSFQAMEMMK--VRS---S-SDKNTDYRNFFEAFVED 388 (433)
Q Consensus 346 -------------------------~~eVrKQAkrLlyiLEAp~llK--v~~---~-~~~~t~Yd~Yf~af~~~ 388 (433)
|.++--.+.|+| =.+||++.+ .+. . +|..+.-.+||+.|..+
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL-KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH-HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 222222333332 234554443 332 2 77899999999999986
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.46 E-value=0.57 Score=51.26 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
+-.+-.+..++..|++.+|+..|++++...|.+. .+.+.+|++|...|+.++|+.+|++.. -+|+-
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3446678888899999999999999988887774 578888999999999999999999885 57763
No 74
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.43 E-value=0.3 Score=46.83 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhc-CC
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL-HR 330 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~-GR 330 (433)
..+....|.+-.-+.........+-..|..+-..+..+++.+|+.+|++|.+..-... ...+.+...+|..|+.. |+
T Consensus 51 ~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d 130 (282)
T PF14938_consen 51 WEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD 130 (282)
T ss_dssp CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3455566665554444444556666788888888889999999999999988764443 44467888899999999 99
Q ss_pred hHHHHHHHHHHh
Q 013954 331 PKEARIMYEKLQ 342 (433)
Q Consensus 331 ~~EAiaLYkkL~ 342 (433)
.++|+..|++-.
T Consensus 131 ~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 131 YEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.22 E-value=0.46 Score=45.07 Aligned_cols=61 Identities=13% Similarity=-0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
-....|..++..|+|.+|+..|+++++.-+.. ..+...++.+|...||.++|+.+|++...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 34567889999999999999999999988776 34556678899999999999999998753
No 76
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.04 E-value=0.84 Score=41.98 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH-HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHH
Q 013954 243 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK-ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW 321 (433)
Q Consensus 243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~ee-a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwL 321 (433)
+.++.+++-+++...|..|+++. .+++++. ..+.|.-+...|++..|++.|+.+.+.+ +..|=.+.|++
T Consensus 8 ~~~~~~~~~~~Le~elk~~~~n~-------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l 77 (177)
T PF10602_consen 8 TKAKNAEELEKLEAELKDAKSNL-------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCL 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHH
Confidence 44555777888888999998777 4555554 5567999999999999999999999987 66777777776
Q ss_pred HHHHHh--cCChHHHHHHHHHHhc
Q 013954 322 SICQDS--LHRPKEARIMYEKLQS 343 (433)
Q Consensus 322 AiAydA--~GR~~EAiaLYkkL~s 343 (433)
.++-=+ .|..........+..+
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 654433 3455555555555543
No 77
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.96 E-value=1 Score=49.38 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.+..|++-. .++|..-. ..+..|..+.+.|++.+|+.+|+++++.-+.+.. .+.++.+|...
T Consensus 60 ~~~g~~~~A~~~~~~al--~~~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~~~la~~l~~~ 129 (765)
T PRK10049 60 RNLKQWQNSLTLWQKAL--SLEPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----LLALAYVYKRA 129 (765)
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHC
Confidence 34445556666676433 44555422 2356788889999999999999999988655433 66689999999
Q ss_pred CChHHHHHHHHHHh-cCCCHHH
Q 013954 329 HRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP~~eV 349 (433)
|+.++|+..|+++. .+|+...
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999885 6886543
No 78
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.85 E-value=0.74 Score=45.75 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--------------------------HHHHHHH-------
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------------------------GLAALQW------- 321 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--------------------------GeaqLwL------- 321 (433)
+++..+=.+|..+|..|.|.+|...|..|++.|+.-+.-- --++||-
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 5556677789999999999999999999999998765311 1233443
Q ss_pred --HHHHHhcCChHHHHHHHHHHh-cCCCHH-HHHHHHHH
Q 013954 322 --SICQDSLHRPKEARIMYEKLQ-SHPNAL-VSKRARQF 356 (433)
Q Consensus 322 --AiAydA~GR~~EAiaLYkkL~-sHP~~e-VrKQAkrL 356 (433)
|-+|+.+...++|+.=|++|. +.|... .|+.-.||
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 788999999999999999996 777654 33333333
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.79 E-value=0.81 Score=49.24 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=49.4
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..|..++..|+|.+|+..|++|++..- ....-=+.+-..||.+|-..|+++||...|+.-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 479999999999999999999987653 333333788899999999999999987777653
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.73 E-value=1.7 Score=42.08 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
..++--+..|..+...|++.+|+..|++|+++-|.. ..+...++.+|...|+.++|+..|++.. ..|+-.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 335568889999999999999999999999987654 5778899999999999999999999985 467643
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=91.69 E-value=0.58 Score=47.07 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHH--HHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEK--VMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEk--A~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
|.-.+..|..++..|+|.+|.++||+ +++.-+ ..++...|+.+|+..|++++|..+|++
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66677889999999999999999995 444432 345566889999999999999999996
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.58 E-value=1 Score=44.97 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC-HHH
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN-ALV 349 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~-~eV 349 (433)
.+..+..++.|..+|++|++..|...||+|++.=+- +. .+.+-+|..|+..|..+-|...|++-. .||+ .+|
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YY---LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence 356678899999999999999999999999986543 32 356667889999999999999999974 5664 444
No 83
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.43 E-value=1 Score=48.61 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhh----hhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKE----ALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYre----AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
+..+.++.|++-.. .+|.. ....+..|..++..|+|.+ |+.+|++|++.-|.. ..+.+.|+.+|...
T Consensus 227 ~~~eA~~~~~~al~--~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~ 297 (656)
T PRK15174 227 KYQEAIQTGESALA--RGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN----VRIVTLYADALIRT 297 (656)
T ss_pred CHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHC
Confidence 34445555554442 33432 3345668999999999986 899999999887643 47788899999999
Q ss_pred CChHHHHHHHHHHh-cCCCHH
Q 013954 329 HRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP~~e 348 (433)
|+.++|+..|++.. .+|+..
T Consensus 298 g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999985 677743
No 84
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.41 E-value=0.91 Score=45.26 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNAL 348 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~e 348 (433)
-+.+.|++|...++.|.|.+|+.+||++...- +.|++.=.++|-|+-|+=-.+..++|++.-+.-. .|||.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 46789999999999999999999999987554 4567779999999999999999999999887764 455544
No 85
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.02 E-value=0.45 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
+.-+..|..++..|+|.+|+..|++|+++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3456788889999999999999999887654
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.93 E-value=0.53 Score=47.01 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.|+.++..|+|.+|+..|-+|..+-+... ++-+-|++|||-+||+++|..-|.|..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 89999999999999999999998877664 556778999999999999999999974
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=90.69 E-value=1.4 Score=47.42 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc-ccchhHHHHHH---HHHHHHhcCChHHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSELHGLAALQ---WSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~-~S~LGGeaqLw---LAiAydA~GR~~EAiaLYkkL 341 (433)
..+......+..+..+|+|++|.++++.||..... -...|+++... ++..+++.++.++|+.+|++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 44555666799999999999999999999988765 22566777665 688899999999999999865
No 88
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.61 E-value=1.2 Score=51.23 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
+..++.++..|++.+|+.++++|+.+=+
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP 109 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHP 109 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 4445555555555555555555554433
No 89
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.15 E-value=2.1 Score=40.85 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcC
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~G 329 (433)
.-+...+..|++.-. .+-.-.-.++.|..+|..|+|..|+.+|+.+...... =..|-..+-..|.-|+-.+|
T Consensus 159 ~lL~~A~~~f~~~~~------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 159 ELLEKAYEQFKKYGQ------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344455556654332 4444455788999999999999999999999322211 14677888888999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 013954 330 RPKEARIMYEKLQSH 344 (433)
Q Consensus 330 R~~EAiaLYkkL~sH 344 (433)
+.++.+..|=+|-+|
T Consensus 233 ~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 233 DVEDYLTTSLELLSR 247 (247)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999888765
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=90.14 E-value=1.7 Score=49.11 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=75.7
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhHH-
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSF- 360 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiL- 360 (433)
.|+.+...|+|.+|++.|+++++.-|.+..+- +-|+++|-..++.++|+..++++. ..|. .+-. ..+.|+.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~layL~~ 180 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHHHHHH
Confidence 37788899999999999999999998886443 466888888999999999999997 5665 3333 5667777
Q ss_pred ------HHHHhhh-hcccCCC-CcchHHHHHHhhcccccccCc
Q 013954 361 ------QAMEMMK-VRSSSDK-NTDYRNFFEAFVEDKTNYPLQ 395 (433)
Q Consensus 361 ------EAp~llK-v~~~~~~-~t~Yd~Yf~af~~~k~~y~~~ 395 (433)
+|.+..+ +-...|. .+.|..|..+.+..+...++.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 2222221 1111554 446688888888877665543
No 91
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.57 E-value=1.7 Score=46.23 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=76.9
Q ss_pred hcCCCCCcchHHHHH---HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---------------HHHHHHHHHHH
Q 013954 264 SVGLNVDPKLKSECE---KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---------------GLAALQWSICQ 325 (433)
Q Consensus 264 ~~Gl~Vdp~~k~e~e---ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---------------GeaqLwLAiAy 325 (433)
++-|.||+=..+... +.-+.|..+|.+|+|.+|+..|-++|+.-+-+--++ .|.-..+|+++
T Consensus 81 ~~dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 81 KQDLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hccCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 367788876554333 234569999999999999999999999988776666 34444455544
Q ss_pred ---------------HhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHhhHHHHHHhhhhc
Q 013954 326 ---------------DSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFMFSFQAMEMMKVR 369 (433)
Q Consensus 326 ---------------dA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLlyiLEAp~llKv~ 369 (433)
.++|...||..=|+..- -.| +.+++|+..+|.=-+|+-=..|.+
T Consensus 161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST 221 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC
Confidence 47888999999998764 344 678999999888777765444444
No 92
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.23 E-value=0.71 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
+.-+..|+.++..|++.+|+.+|++|++.-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456778888888888888888888876543
No 93
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.88 E-value=0.61 Score=29.89 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
..|..|..++..|++.+|+..|+.+++.-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 578999999999999999999999988765
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.96 Score=48.38 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=90.4
Q ss_pred hcCCCCCcchH---------HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc---------------cchh-----
Q 013954 264 SVGLNVDPKLK---------SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---------------SELH----- 314 (433)
Q Consensus 264 ~~Gl~Vdp~~k---------~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~---------------S~LG----- 314 (433)
.++|++||.-. ..|+..=..|..+|..|.|+.|.+.|-.|+..-|-+ ++||
T Consensus 227 ~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 227 QQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred hhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhh
Confidence 46788888744 334455567999999999999999999987765543 3343
Q ss_pred --------------HHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhhHHHHHH------hhhhccc--
Q 013954 315 --------------GLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQAME------MMKVRSS-- 371 (433)
Q Consensus 315 --------------GeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLEAp~------llKv~~~-- 371 (433)
=++-|.-|.||.+++..++|..=|++. ++.-..++|+--++.-..|+=.+ .+.++..
T Consensus 307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as 386 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNAS 386 (486)
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcc
Confidence 134556677888888888888888877 45556788887777777777221 2223333
Q ss_pred -CCCCcchHHHHHHhhccccccc
Q 013954 372 -SDKNTDYRNFFEAFVEDKTNYP 393 (433)
Q Consensus 372 -~~~~t~Yd~Yf~af~~~k~~y~ 393 (433)
.+++-.|+.-.-.|.-+++.-.
T Consensus 387 ~~eikkayrk~AL~~Hpd~~ags 409 (486)
T KOG0550|consen 387 DDEIKKAYRKLALVHHPDKNAGS 409 (486)
T ss_pred cchhhhHHHHHHHHhCCCcCcch
Confidence 3477788888888877776655
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.96 E-value=1.3 Score=44.62 Aligned_cols=58 Identities=3% Similarity=-0.212 Sum_probs=41.3
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 344 (433)
.++.++..|+|.+|+..++++.+.-|.+. .+...++.+|-..|+.++|+.++.+|.++
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 36677777777777777777766665544 45566677777778888888888888644
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=2.5 Score=46.08 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.++|++ +++.-..|..+|..|+|+.||.+|.+|+..-|-.-++ --+.|-||-.+|...+|++=|+++. -||+
T Consensus 352 ~~~pe~---A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l----YsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 352 YINPEK---AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL----YSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred hhChhH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH----HHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 456666 3445555999999999999999999998887554443 4467899999999999999999986 5877
Q ss_pred H
Q 013954 347 A 347 (433)
Q Consensus 347 ~ 347 (433)
.
T Consensus 425 ~ 425 (539)
T KOG0548|consen 425 F 425 (539)
T ss_pred H
Confidence 4
No 97
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.64 E-value=2 Score=43.03 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.|+.+-.++..|+|..|...|..=++.-| +|.+-..+..||.-||=+.|+.++|...|..+. .||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 89999999999999999999999888875 456778999999999999999999999999995 5665
No 98
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=1.3 Score=46.71 Aligned_cols=56 Identities=18% Similarity=0.035 Sum_probs=38.4
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+.-...-..|++|+.+-++|++.=+.|. .+-..-..||-++|..+.|+..+++.+
T Consensus 263 lA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 263 LAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34555566777777777777777666554 345556677777777777777777764
No 99
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=86.77 E-value=1.8 Score=34.27 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc--cccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMY 338 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLY 338 (433)
+++..|..+|+.|+|=+|=+.||.+-...+ .+.-+-|.+|+--|..+-..|+.+-|..|+
T Consensus 1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 478899999999999999999999865544 566788999999999888899988888775
No 100
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=86.62 E-value=1.6 Score=45.66 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
-+-.|+.++..|.|..||+.||.|.+. +-.+=|||.--|..||..+|+.++.+.--+..
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455699999999999999999998764 45788999999999999999977766544433
No 101
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.51 E-value=1.8 Score=42.74 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHH--HHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL--QWSICQDSLHRPKEARIMYEKL-QSHPN 346 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqL--wLAiAydA~GR~~EAiaLYkkL-~sHP~ 346 (433)
..+..|..|..+-+-|+|.+|+++|++++.-+ +.|+.+| -+|.|+=++++..+|+..-++| ..||.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 45678889999999999999999999987543 3444443 4566777889999999888888 45654
No 102
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.32 E-value=2.5 Score=34.64 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccccchh-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 286 SLMDSGKLKEALPFYEKVMNKMVFKSELH-----GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 286 ~amerGkYreAV~~lEkA~~~v~~~S~LG-----GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+..+|.|.+|++.|....+......... ..+.+.+|.++-..|+.++|+..++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46789999999999999988876655433 5778899999999999999999998764
No 103
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.04 E-value=1 Score=30.93 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=16.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHh
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMN 305 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~ 305 (433)
..|..++..|+|.+|+++||+++.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777553
No 104
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.96 E-value=2.2 Score=31.54 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhc
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKM 307 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerG-kYreAV~~lEkA~~~v 307 (433)
..+..+..+.+..|.+-+ .+||.. ..-.+..|..++..| +|.+|+..|++|+++-
T Consensus 13 ~~~~~~~~~A~~~~~~ai--~~~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAI--ELDPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHSTTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 455677888888998665 566664 345888999999999 8999999999998764
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.74 E-value=7.6 Score=32.96 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------HHHHHHHHHHHHhcCChHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------GLAALQWSICQDSLHRPKEARI 336 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------GeaqLwLAiAydA~GR~~EAia 336 (433)
.+++..+..|..+...|.-.++++.|++|+++....---+ -.+...++.++...|+.++|+.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4677788888889999999999999999988774331111 1445567778889999999999
Q ss_pred HHHHHh-cCCCHHH
Q 013954 337 MYEKLQ-SHPNALV 349 (433)
Q Consensus 337 LYkkL~-sHP~~eV 349 (433)
+|+++. .+|.-+-
T Consensus 84 ~~~~~l~~dP~~E~ 97 (146)
T PF03704_consen 84 LLQRALALDPYDEE 97 (146)
T ss_dssp HHHHHHHHSTT-HH
T ss_pred HHHHHHhcCCCCHH
Confidence 999996 7999773
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=85.09 E-value=3.9 Score=38.10 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cC----CCHHHHHHHHH
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SH----PNALVSKRARQ 355 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sH----P~~eVrKQAkr 355 (433)
|-.|--.=..|+|.+|+..|+.|..+-+ =.-+.-..++.||=++|+.++|+.-.+.-. .+ -+.+|+++|+.
T Consensus 73 ~gLG~~~Q~~g~~~~AI~aY~~A~~L~~----ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 73 FRLGECCQAQKHWGEAIYAYGRAAQIKI----DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 4446666778999999999999987764 345677889999999999999998888664 33 47789999999
Q ss_pred HhhHH
Q 013954 356 FMFSF 360 (433)
Q Consensus 356 LlyiL 360 (433)
+|-.|
T Consensus 149 ~L~~l 153 (157)
T PRK15363 149 MLQQL 153 (157)
T ss_pred HHHHh
Confidence 88655
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=84.79 E-value=2.5 Score=48.45 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.+.+.--++..+.+|+.|+|++|+++|-.++..-.-+. +-+-.-+|-||-.+|+.++||.-|++.
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN---AFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc---hhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445556667777777777777777766554443333 223333566777777777777666665
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=84.78 E-value=3.7 Score=46.46 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 327 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 327 (433)
..|.-++.+.+..+++-. ..+|..-.. .++....+...|++.+|+.++|++++ ...+.-...+-+|.+|-.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL--~~~P~~~~a---v~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 44 RARAGDTAPVLDYLQEES--KAGPLQSGQ---VDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRN 114 (822)
T ss_pred HHhCCCHHHHHHHHHHHH--hhCccchhh---HHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHH
Confidence 344445556666665443 444443211 11555666777999999999999882 223333455566889999
Q ss_pred cCChHHHHHHHHHHh-cCCCH
Q 013954 328 LHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.|+.++|+.+|+++. .+|+-
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999995 56654
No 109
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.67 E-value=7.4 Score=39.29 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHh
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM 357 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl 357 (433)
-.|+.+..+|++.+|..+|+++.+..+.. .+ .+.+.++..+-..|+.++|++..+.+. .+| |+.+.+...++.
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGND-NI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAY 197 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33566666666666666666665433221 11 123334555555666666666666663 455 344444333333
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=84.30 E-value=4.9 Score=29.55 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 309 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~ 309 (433)
+..+..+.++.|+.=. ..+|. ..+..+..|..++.+|+|.+|+.+|+++++.-|.
T Consensus 9 ~~g~~~~A~~~~~~~l--~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQAL--KQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HCTHHHHHHHHHHHHH--CCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HcCCHHHHHHHHHHHH--HHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445666677776544 33355 4455888999999999999999999999887653
No 111
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.16 E-value=2 Score=28.49 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHh
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMN 305 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~ 305 (433)
...|..++.+|+|.+|+.++++|++
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3445566666666666666666544
No 112
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=83.88 E-value=5 Score=37.20 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCcch-------HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954 244 AEARAAKEERTRQLLAAYKKSVGL--NVDPKL-------KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 314 (433)
Q Consensus 244 eEEkaaRe~rtke~LaaYrk~~Gl--~Vdp~~-------k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG 314 (433)
+-||.-.+.-..+.-+.||+-+-+ +|-++. .+-|-..| ...+-.-|+|.+++..-+.|+-..+++-+|+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~L--s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGL--SGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHH--HHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 335555555566667777766532 222221 12233322 3456788999999999999999999999998
Q ss_pred H-H------HHHHHHHHHHhcCChHHHHHHHHH
Q 013954 315 G-L------AALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 315 G-e------aqLwLAiAydA~GR~~EAiaLYkk 340 (433)
- + +-+.-+.|++.+||.+||+.-|+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 2 2 333457899999999999988775
No 113
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.93 E-value=2.2 Score=30.20 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccc
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE 312 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~ 312 (433)
.+..|..++..|++.+|+..|+++++..|.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 567799999999999999999999999887754
No 114
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=81.85 E-value=3.1 Score=31.57 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
...+...+..|......|+|.+|+++|++|++..
T Consensus 43 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 43 PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3457788899999999999999999999998763
No 115
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.46 E-value=2.4 Score=29.13 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 013954 319 LQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkk 340 (433)
..|+.+|...|+.++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999999998
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=81.28 E-value=3.7 Score=47.26 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHH-----------HHHHHHhCCchhhhhhHHHHHHhhcccccch---------
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALK-----------DGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--------- 313 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~-----------~Gk~amerGkYreAV~~lEkA~~~v~~~S~L--------- 313 (433)
..+++..|+..- --.+..+.|+++++ .|-.++.+|+|.+|.-. .+.+..+.++..
T Consensus 34 ~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 34 LDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence 345566663211 12334455655544 48889999999998877 888888888721
Q ss_pred -h--H---HHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 314 -H--G---LAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 314 -G--G---eaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
| | .+-.-||+|||.+|+.++|+++|+++..
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 1 1 4677899999999999999999999963
No 117
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.02 E-value=15 Score=28.37 Aligned_cols=55 Identities=33% Similarity=0.388 Sum_probs=30.3
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccc-cchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 286 SLMDSGKLKEALPFYEKVMNKMVFK-SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 286 ~amerGkYreAV~~lEkA~~~v~~~-S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.++..|++..|+..|+++.. +... .... ...+.+.-.+...++.++|+..+.+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELA-EALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchH-HHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66777777777777777755 3332 1221 112222222566677777777776665
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.49 E-value=3.2 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 317 AALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 317 aqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
+...|+++|-..|+.++|+.+|++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4567999999999999999998876
No 119
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.18 E-value=6.5 Score=33.43 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 337 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 337 (433)
.++.+.++.|..+|+.-+.++||.-+++|+..+..... ==.+-=+|+.||.-.|+..+.++-
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999966331 113444788999999999998763
No 120
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.88 E-value=4 Score=26.28 Aligned_cols=31 Identities=26% Similarity=0.097 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++-.+++.+|-..|+.++|+..|++.. ..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456789999999999999999999985 3443
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=79.78 E-value=2.8 Score=48.05 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
-|..|.-+|+.|.|.+|+++||+|+..-|.+. .+.+-||..|+-.|++++|...-+++.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 46779999999999999999999999987654 688999999999999999987777754
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.60 E-value=7.1 Score=42.11 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+=..+.+-+.|+|.+|+++|++....|.-+. .+.-..|.+|-.+||.+||...|+.|. +.|.-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 34445677889999999999999776665443 234456888999999999999999996 67754
No 123
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.71 E-value=33 Score=32.27 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
..+..+|++-| -+.|+..+. .+=.|..+|.||++.+|+..|+.+.+.- ...+.+.--+|.||.+.|..
T Consensus 27 ~D~e~lL~ALr-----vLRP~~~e~---~~~~~~l~i~r~~w~dA~rlLr~l~~~~----~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 27 DDAEALLDALR-----VLRPEFPEL---DLFDGWLHIVRGDWDDALRLLRELEERA----PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHH-----HhCCCchHH---HHHHHHHHHHhCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHHHcCCh
Confidence 34455555555 344665544 5667999999999999999999864443 44455555679999999886
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhH
Q 013954 332 KEARIMYEKLQSHPNALVSKRARQFMFS 359 (433)
Q Consensus 332 ~EAiaLYkkL~sHP~~eVrKQAkrLlyi 359 (433)
.==+--.+-|.+.+++..+.-.++|+=.
T Consensus 95 ~Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 5444444557788899988888887644
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=78.62 E-value=6.1 Score=42.76 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=44.8
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.|+.+++.+++.+|.+.|.+|+.+-|-+ ...+|.++.+|=..|+.+|||.+-..+.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~----~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS----PLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 3788888888888888888888887665 5567788888888888888888766654
No 125
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.23 E-value=2.6 Score=24.26 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
+..|..++..|++.+|+..|+.++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45667777777777777777776653
No 126
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.22 E-value=2.9 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 013954 317 AALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 317 aqLwLAiAydA~GR~~EAiaLYkk 340 (433)
+.+.|+.+|-..|+.++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567888999999999999988763
No 127
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.13 E-value=5.4 Score=38.08 Aligned_cols=73 Identities=25% Similarity=0.254 Sum_probs=53.5
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH--HHHHHHhcCChHHHHHHHHHHhcCCCH----HHHHHHHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSLHRPKEARIMYEKLQSHPNA----LVSKRARQF 356 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~GR~~EAiaLYkkL~sHP~~----eVrKQAkrL 356 (433)
|+...+.--|+.|+++|++|.+.-.+...--.++.+- ++--+--+|+.+||+..+.++..|+.. .+..+||.+
T Consensus 132 ~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 132 GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 4456666669999999999999888755422333332 566677899999999999999877654 556667654
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=7.8 Score=41.55 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=77.1
Q ss_pred cccCCCcccCCCCccCcHHHHH-HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHh
Q 013954 227 KTFGGGRTIRPGDVLETAEARA-AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMN 305 (433)
Q Consensus 227 kayGGGR~IrpGe~lEteEEka-aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~ 305 (433)
++=|+|.+||-|...-.=|+-. .|+=.-.-.|-.++. ++|.+.+.. .-+=.|--+|--|.|++|+.-|+-+|+
T Consensus 12 ~~~g~~~~~kkarK~P~Ledfls~rDytGAislLefk~----~~~~EEE~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 12 KRNGAGPTIKKARKMPELEDFLSNRDYTGAISLLEFKL----NLDREEEDS--LQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred cccCCCCcchhhhcCchHHHHHhcccchhHHHHHHHhh----ccchhhhHH--HHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 5668888898887753333333 333333334555553 555554433 344557788999999999999999998
Q ss_pred hcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013954 306 KMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 346 (433)
Q Consensus 306 ~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 346 (433)
.-..+ |++-+.||-|+==+|...||.++-.+....|-
T Consensus 86 ~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 86 KDDAP----AELGVNLACCKFYLGQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred cCCCC----cccchhHHHHHHHHHHHHHHHHHHhhCCCChH
Confidence 65444 55568899999999999999998887766664
No 129
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.94 E-value=10 Score=42.38 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=69.9
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHH
Q 013954 258 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 337 (433)
Q Consensus 258 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 337 (433)
+.-||+.+ -|||.-.- ..|=.|..++..|+|..|.=+|++|++.=|.++.+ .--+.+.|+.+|+.++|+.+
T Consensus 475 ~~~fr~Al--~~~~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi----~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 475 MKSFRKAL--GVDPRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI----LCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHHHHhhh--cCCchhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhH----HhhhhHHHHHhhhhhHHHHH
Confidence 34576555 45555443 37889999999999999999999999999988854 23356678999999999999
Q ss_pred HHHHhc--CCCHHHHHHHHHHhhHHH
Q 013954 338 YEKLQS--HPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 338 YkkL~s--HP~~eVrKQAkrLlyiLE 361 (433)
|++-.. --++-.+=+-.++||+++
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 998742 223333334456777764
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=76.92 E-value=8.2 Score=40.40 Aligned_cols=68 Identities=15% Similarity=-0.007 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 348 (433)
++-...+++.++.+|+|+.|++...+|+...|.. -+.-..||.||-.+|+.++|+.-...+-.+|+.+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~----f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE----FETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 5556678999999999999999999999987643 3455669999999999999997776665555544
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=75.61 E-value=13 Score=41.97 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHH----HhhcccccchhHHHHHHHHHHHHhcC
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKV----MNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA----~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
--+.|++|++...-.+++...+.-+..+-+-+...++|.++.|++++.+- .+++++ +|+ -|.-+--++
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~-----~e~---ka~l~~kl~ 233 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF-----EET---KADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH-----hhh---HHHHHHHHh
Confidence 35678999988887888999999999999999999999999999999874 333322 122 345566789
Q ss_pred ChHHHHHHHHHHh-cCCC-HHHHHHHHHHhh
Q 013954 330 RPKEARIMYEKLQ-SHPN-ALVSKRARQFMF 358 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~-~eVrKQAkrLly 358 (433)
|.+||..+|+.|. +.|+ ..-..+....++
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 9999999999996 6775 445555555554
No 132
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.65 E-value=7 Score=42.80 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 311 SELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 311 S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
++..=-+.--||||.-.+||.+|||.|++.|. -+|..
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc
Confidence 33334455569999999999999999999996 46753
No 133
>PRK04841 transcriptional regulator MalT; Provisional
Probab=74.65 E-value=9.9 Score=41.35 Aligned_cols=63 Identities=11% Similarity=-0.064 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccch--hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--HGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L--GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
....|..+...|++.+|+.+|+++++........ -..+.++++++|...|+.++|+...++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888999999999999999999875332222 23577899999999999999999988774
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.46 E-value=12 Score=38.18 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
--.||++|+...|..-+..-.+..+..-|+++.- ||-|||.|+.++|+..|+.|. -.|.-.+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk----am~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK----AMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH----HHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 4678999999999999999888886666888875 678999999999999999995 4565544
No 135
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=9.6 Score=41.70 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
+.|-+.+.+||.-+ +|+|..... =|-.||.+=--++--=|+=+|.+|.+.-|-.|++ -.-|.-||+.++|.
T Consensus 378 KNt~AAi~sYRrAv--di~p~DyRA---WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRl----w~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 378 KNTHAAIESYRRAV--DINPRDYRA---WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRL----WVALGECYEKLNRL 448 (559)
T ss_pred cccHHHHHHHHHHH--hcCchhHHH---HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHH----HHHHHHHHHHhccH
Confidence 34567778888554 777876544 4667777666666677899999999999888864 22367899999999
Q ss_pred HHHHHHHHHHhc
Q 013954 332 KEARIMYEKLQS 343 (433)
Q Consensus 332 ~EAiaLYkkL~s 343 (433)
+|||.-|++-.-
T Consensus 449 ~eAiKCykrai~ 460 (559)
T KOG1155|consen 449 EEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=74.36 E-value=7.4 Score=41.31 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.-.+..|+.+|.++.+.+|-.+||.|+.+ +...+.-.|+|-+|++.|+..+|.++++.-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL-----RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34677899999999999999999988765 345677789999999999999999998864
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=74.20 E-value=18 Score=27.97 Aligned_cols=60 Identities=32% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI-CQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAi-AydA~GR~~EAiaLYkkL 341 (433)
...+..|...+..|.|..++..++++....... ......+.. +|...|+.++|+..|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666778888888888888888887755444 333334444 888999999999999986
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=73.47 E-value=11 Score=37.33 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh-HHHHHHHHHHh-cCC
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-KEARIMYEKLQ-SHP 345 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-~EAiaLYkkL~-sHP 345 (433)
+-..|..|+|.+|...|+.|++.=+. ...+...+++|..-.|.. +++...-.+|+ .||
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 34455555555555555555432211 244555555555555555 33334444443 454
No 139
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=73.25 E-value=22 Score=31.36 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred HHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc-----ccccchhHHHHHHHHHHHH
Q 013954 257 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM-----VFKSELHGLAALQWSICQD 326 (433)
Q Consensus 257 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v-----~~~S~LGGeaqLwLAiAyd 326 (433)
..++|+...=.+.+|. +.+.+-..++.++.++++|++.++-.++-+|.+.+ ..+-+-||++.=+|.--|+
T Consensus 6 ~~~~Y~~~~v~tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~ 85 (124)
T TIGR00208 6 PYQAYQQNSVNTASPGELTLMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYD 85 (124)
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 4567877754555555 33788889999999999999999999999987776 2344568999988888887
Q ss_pred hcC
Q 013954 327 SLH 329 (433)
Q Consensus 327 A~G 329 (433)
-+-
T Consensus 86 y~~ 88 (124)
T TIGR00208 86 YMY 88 (124)
T ss_pred HHH
Confidence 654
No 140
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=72.70 E-value=6.8 Score=45.56 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=77.4
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc--cccchh----HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH---HHHH
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELH----GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA---LVSK 351 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~--~~S~LG----GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~---eVrK 351 (433)
..|-..|..|.+..|..+|..|...+. .++..| =-....||.|+|.++++..|-.||+.+. -||+- -+|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 357888999999999999999988854 444444 1246789999999999999999999996 69974 3333
Q ss_pred --HHHHHhhHHHHHHhhhhcccCC-CCcchHHHHHHhhccccccc
Q 013954 352 --RARQFMFSFQAMEMMKVRSSSD-KNTDYRNFFEAFVEDKTNYP 393 (433)
Q Consensus 352 --QAkrLlyiLEAp~llKv~~~~~-~~t~Yd~Yf~af~~~k~~y~ 393 (433)
.|+.=.=..||-.+++..-.+. .+-.=..|+.-|-=.+.-|.
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 4444455567777777544422 34444555554444444443
No 141
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.66 E-value=7.9 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 317 AALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 317 aqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+-..+++||...|+.++|+..|++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678999999999999999998875
No 142
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.61 E-value=7.8 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
++-+.++.+|...|+.++|+..|++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345679999999999999999999874
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.75 E-value=9.4 Score=41.89 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh------------------------------HHHHHHHHHHHHh
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH------------------------------GLAALQWSICQDS 327 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG------------------------------GeaqLwLAiAydA 327 (433)
.+.-+.|..||..|+|..||.+|-.|+.+-+.+--|- +..---+.-|+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 4556789999999999999999999999888864443 2222335678889
Q ss_pred cCChHHHHHHHHH-HhcCCCHHHHHHHH
Q 013954 328 LHRPKEARIMYEK-LQSHPNALVSKRAR 354 (433)
Q Consensus 328 ~GR~~EAiaLYkk-L~sHP~~eVrKQAk 354 (433)
+||.++|+.-|++ |..-|+-.+=+...
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl 110 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGL 110 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhH
Confidence 9999999999976 56777766544433
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=71.74 E-value=6.6 Score=28.84 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 314 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG 314 (433)
.+..+.+.-|++-. ..+|...+. .+..|..++..|++.+|...|++++..-+.++.+.
T Consensus 5 ~~~~~A~~~~~~~l--~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 5 GDYDEAIELLEKAL--QRNPDNPEA---RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp THHHHHHHHHHHHH--HHTTTSHHH---HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred cCHHHHHHHHHHHH--HHCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 34455555555433 344553333 67899999999999999999999988877654443
No 145
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.10 E-value=13 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=37.3
Q ss_pred CcchHHHHH----HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH
Q 013954 270 DPKLKSECE----KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL 316 (433)
Q Consensus 270 dp~~k~e~e----ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe 316 (433)
|+...++|| +..+.|..++.+|.+.+++.+|-.|+..++....|-+-
T Consensus 70 d~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~v 120 (143)
T KOG4056|consen 70 DPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQV 120 (143)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444455555 67788999999999999999999999988777666543
No 146
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.13 E-value=7 Score=43.12 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chh--HHHHHH--HHHH
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELH--GLAALQ--WSIC 324 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LG--GeaqLw--LAiA 324 (433)
-.|..+.+.+|++-. .+.|.- ++.+|-.|-..|+-|.|++|++||-.|+......+ +=+ +-=.|| |-++
T Consensus 477 ~~~s~EAIsAY~rAL--qLqP~y---VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a 551 (579)
T KOG1125|consen 477 GNRSEEAISAYNRAL--QLQPGY---VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA 551 (579)
T ss_pred CcccHHHHHHHHHHH--hcCCCe---eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence 345566667776433 334431 23357779999999999999999999977665422 111 211344 6688
Q ss_pred HHhcCChHHHHHHH
Q 013954 325 QDSLHRPKEARIMY 338 (433)
Q Consensus 325 ydA~GR~~EAiaLY 338 (433)
+-+.+|.|-++..|
T Consensus 552 ls~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 552 LSAMNRSDLLQEAA 565 (579)
T ss_pred HHHcCCchHHHHhc
Confidence 88899988665544
No 147
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.93 E-value=26 Score=37.74 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=89.5
Q ss_pred CccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcc------hHH----------------HHHHHHHHHHHHHhCCchhhh
Q 013954 239 DVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK------LKS----------------ECEKALKDGDSLMDSGKLKEA 296 (433)
Q Consensus 239 e~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~------~k~----------------e~eea~~~Gk~amerGkYreA 296 (433)
..+..--++....+..+-.+.-|.-=..+....- ++. .+...|=.|.-++..|++++|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 3354555666677777777777765444433333 111 122355668999999999999
Q ss_pred hhHHH-------HHHhhcccccchhHHHHHHHHHHHHhcCChHH----HHHHHHHHh----cCCCHHHHHHHHHHhhHHH
Q 013954 297 LPFYE-------KVMNKMVFKSELHGLAALQWSICQDSLHRPKE----ARIMYEKLQ----SHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 297 V~~lE-------kA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E----AiaLYkkL~----sHP~~eVrKQAkrLlyiLE 361 (433)
+.+|. .....-+..+++--.+.|.+++.|+.-++..+ +-.+.++|. .||+..++.-..-++.++.
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99999 55555666778889999999999999998766 778888774 5999998877777766665
Q ss_pred HH
Q 013954 362 AM 363 (433)
Q Consensus 362 Ap 363 (433)
.-
T Consensus 504 ~~ 505 (608)
T PF10345_consen 504 TF 505 (608)
T ss_pred hC
Confidence 43
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=67.92 E-value=19 Score=34.01 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHHHHhCCchhhhhhHHHHHHhh--cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHhhHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMFSF 360 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLlyiL 360 (433)
|--.--.|+|+.|++.|.-|..+ -++.. .+..+.||=++|+...|+.-++.... .-+..++.+|..+|=.|
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDYRP------VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCc------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 44445567888888888876433 33333 56678999999999999998888864 44788999999988765
Q ss_pred H
Q 013954 361 Q 361 (433)
Q Consensus 361 E 361 (433)
.
T Consensus 152 ~ 152 (165)
T PRK15331 152 K 152 (165)
T ss_pred H
Confidence 4
No 149
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.18 E-value=15 Score=33.19 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 354 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 354 (433)
+||-..+. -..+|+||+|.+|+.+.+.. .--.+.-|+|.|-=.+|-...+-.-.-+|.+.-.++...=|.
T Consensus 38 ~E~v~lIR-lsSLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg~p~lq~Faa 107 (115)
T TIGR02508 38 EEAVQLIR-LSSLMNRGDYQSALQLGNKL---------CYPDLEPWLALCEWRLGLGSALESRLNRLAASGDPRLQTFVA 107 (115)
T ss_pred HHHHHHHH-HHHHHccchHHHHHHhcCCC---------CCchHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45544444 56899999999999988764 233567799999988998887777777777777777655554
Q ss_pred HH
Q 013954 355 QF 356 (433)
Q Consensus 355 rL 356 (433)
-|
T Consensus 108 g~ 109 (115)
T TIGR02508 108 GM 109 (115)
T ss_pred HH
Confidence 44
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=66.73 E-value=48 Score=36.21 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=47.0
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccch-hHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL-HGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L-GGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
-.|..++..|+|.+|..+++.|++..+..... -+.+...++.++-..|+.++|+.+|++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35777889999999999999998865544322 24455678888889999999999888874
No 151
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.47 E-value=26 Score=38.79 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+|-.|+|..|+.+-....||.+|-|..
T Consensus 559 evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 455555555555555555555555554
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.29 E-value=57 Score=32.88 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..++..+..|+-+++||.|=.|+--++.+++. -.+|.--.++-.+|.-+|.++|-.++|...=+-|. .-|+-
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 45566889999999999999999999999999 67778888999999999999999999998877775 34443
No 153
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=66.22 E-value=12 Score=27.85 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 309 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~ 309 (433)
++..+.+..+..-+ .++|. .....+..|..++..|+|.+|+..|+.+++..+.
T Consensus 9 ~~~~~A~~~~~~~l--~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 9 EDYEEALEVLERAL--ELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCHHHHHHHHHHHH--HhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34444455554333 44555 4455778999999999999999999999988873
No 154
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.04 E-value=11 Score=42.77 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHHHH-HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH-HhcCC
Q 013954 275 SECEKALK-DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQSHP 345 (433)
Q Consensus 275 ~e~eea~~-~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~sHP 345 (433)
-++.++|. .|..+-+||++.+|+.+|+.++++-+-. -++-+.||+||.+-|+.++|-..|.. |+-.|
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 45667777 7888899999999999999988876543 36778899999999999988888765 34455
No 155
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.87 E-value=22 Score=34.87 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh--cccccchhHHHHHHHHHHHHhcCC
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK--MVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~--v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
++.+.++.-+-.++.+.|..++..+. ++.++..+..|+|.+|+..|+.+.+. .+..-++-|.+. =+.|+
T Consensus 104 ~~d~A~aqL~~~l~~t~De~lk~l~~--lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil-------l~kg~ 174 (207)
T COG2976 104 NLDKAEAQLKQALAQTKDENLKALAA--LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL-------LAKGD 174 (207)
T ss_pred cHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH-------HHcCc
Confidence 34455555555556666666666643 44566777777777777777776554 444445556653 35688
Q ss_pred hHHHHHHHHHHh-cCCCHH
Q 013954 331 PKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~~e 348 (433)
.++|++=|++=. +.+++.
T Consensus 175 k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 175 KQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHHHHHHHHHccCChH
Confidence 888888887754 434433
No 156
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=65.28 E-value=14 Score=38.92 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 347 (433)
.+-.|+.+.-+|+..+|++.|+.++..-..--.++-.....++.||=..++.++|...+.+|..|-+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 67789999999999999999999885444445788888888999999999999999999999866544
No 157
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=64.73 E-value=32 Score=31.92 Aligned_cols=64 Identities=9% Similarity=-0.084 Sum_probs=49.5
Q ss_pred CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHHHHh
Q 013954 290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRARQFM 357 (433)
Q Consensus 290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAkrLl 357 (433)
.+++.+++..|++++..-+.+. +.-+.|+.+|-+.|+.++|+..|++.. ..| +.++.-.-...+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6778899999999999887764 456668889999999999999999996 355 555554444433
No 158
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=64.19 E-value=32 Score=33.35 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCcc-hHHHHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhccc------cc----chhHHHHHHHHHHHHhcCChH---
Q 013954 268 NVDPK-LKSECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVF------KS----ELHGLAALQWSICQDSLHRPK--- 332 (433)
Q Consensus 268 ~Vdp~-~k~e~eea~~~Gk~amerG-kYreAV~~lEkA~~~v~~------~S----~LGGeaqLwLAiAydA~GR~~--- 332 (433)
..+|. .+..|+.-|..|+.+++++ +|..|+.+|+.|.+.+.. .+ ++-..+-.-||.||=..+..+
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 44565 6688999999999999999 999999999999998744 11 222455566888887777643
Q ss_pred HHHHHHHHHh-cCCC
Q 013954 333 EARIMYEKLQ-SHPN 346 (433)
Q Consensus 333 EAiaLYkkL~-sHP~ 346 (433)
.|..+-+.++ -||+
T Consensus 105 ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 105 KALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHhCCC
Confidence 4555555564 3666
No 159
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=62.93 E-value=12 Score=33.52 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 315 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG 315 (433)
-+-+..+.|..++.+|++.+|+.+|=+|+..++..+.|=+
T Consensus 62 ~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 62 FFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3567888999999999999999999999998887776544
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=62.88 E-value=15 Score=39.44 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc----------------chh--------------HHHHHHHH
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----------------ELH--------------GLAALQWS 322 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S----------------~LG--------------GeaqLwLA 322 (433)
..++++.-|+.|+.++-+|+|.+|+-+|-+|++.=|-+- +.+ --+.+|-.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 346777788888888888888888888888876543221 000 12334444
Q ss_pred HHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013954 323 ICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 355 (433)
Q Consensus 323 iAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 355 (433)
..+=..|..++|.+=++++. +.|+.+..+.|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 44555566677777666664 4565555555543
No 161
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.72 E-value=15 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 317 AALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 317 aqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+-..++.||...|+.++|+.-|++-.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 44678999999999999999999874
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.23 E-value=10 Score=40.72 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHH
Q 013954 287 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALV 349 (433)
Q Consensus 287 amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eV 349 (433)
...+-+|--|+.+||-.... .-+--..+++|+|-||=-+|..++|...|+-|. ..|+.++
T Consensus 32 fls~rDytGAislLefk~~~---~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL---DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc---chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 45566777888887766521 122225789999999999999999999999996 4555543
No 163
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=60.54 E-value=51 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=42.3
Q ss_pred hhcCCCCCcchHH-HHHHHHHHHHHHHhCC-chhhhhhHHHHHHhhcccccchhH
Q 013954 263 KSVGLNVDPKLKS-ECEKALKDGDSLMDSG-KLKEALPFYEKVMNKMVFKSELHG 315 (433)
Q Consensus 263 k~~Gl~Vdp~~k~-e~eea~~~Gk~amerG-kYreAV~~lEkA~~~v~~~S~LGG 315 (433)
...+..-|++.++ -+-+..+.|..+..+| ++.+|+.+|=+|+.-++....|=+
T Consensus 75 ~~~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~ 129 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLS 129 (148)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 4456666776554 4778899999999999 999999999999988877766644
No 164
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=60.35 E-value=11 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHH
Q 013954 338 YEKLQSHPNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 338 YkkL~sHP~~eVrKQAkrLlyiLEAp 363 (433)
-.+|++|++++|++.|+.|+-.+...
T Consensus 47 v~~Lrkh~~~~I~~~A~~Li~~WK~~ 72 (75)
T smart00509 47 VNGLRKHKNEEIRKLAKKLIKSWKKL 72 (75)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999877643
No 165
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=59.88 E-value=10 Score=26.13 Aligned_cols=33 Identities=15% Similarity=-0.074 Sum_probs=25.5
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHH
Q 013954 300 YEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARI 336 (433)
Q Consensus 300 lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAia 336 (433)
|++|+++=|.+. ++-.+|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~n~----~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNA----EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCH----HHHHHHHHHHHHCcCHHhhcC
Confidence 566666665543 577889999999999999973
No 166
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.58 E-value=35 Score=39.08 Aligned_cols=10 Identities=50% Similarity=0.518 Sum_probs=5.1
Q ss_pred CCCCChHHHH
Q 013954 60 EASLDPVKLA 69 (433)
Q Consensus 60 ~~~~dpvkla 69 (433)
.++.|-..||
T Consensus 46 ~~~~~~l~la 55 (966)
T KOG4626|consen 46 EGSDDRLELA 55 (966)
T ss_pred ccchhHHHHH
Confidence 3455555555
No 167
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.52 E-value=23 Score=38.29 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 311 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S 311 (433)
....+..-+.+-+|+.++ ...-.++.++|..+..+|..++|.+|++.-..|++.+.+++
T Consensus 495 L~~~a~~lE~~Iqy~nRf-----r~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~ 553 (569)
T PRK04778 495 LVENATLTEQLIQYANRY-----RSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEPGV 553 (569)
T ss_pred HHHHHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcH
Confidence 334455556677787666 44568889999999999999999999999999999998765
No 168
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=59.50 E-value=12 Score=30.22 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHH
Q 013954 338 YEKLQSHPNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 338 YkkL~sHP~~eVrKQAkrLlyiLEAp 363 (433)
-.+|++|++++|++.|+.|+-.+...
T Consensus 49 V~~Lrkh~~~~i~~~A~~Lv~~Wk~~ 74 (76)
T cd00183 49 VNSLRKHSNEKIRKLAKALIKSWKKL 74 (76)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999877653
No 169
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.47 E-value=80 Score=32.62 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC--hHHHHHHHHHHhcCCCH
Q 013954 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR--PKEARIMYEKLQSHPNA 347 (433)
Q Consensus 272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR--~~EAiaLYkkL~sHP~~ 347 (433)
....-.+..+.....+|+++.|.+|...|+...+.++..-+ =+.--.++.||++=.+ +++|...-+++..+...
T Consensus 126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~ 201 (379)
T PF09670_consen 126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA 201 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh
Confidence 34444567788899999999999999999998876443333 1233457788888654 77888888887766433
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.87 E-value=27 Score=35.63 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA 318 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaq 318 (433)
|..+|+.|+|.+|+..+|+-++.++.+..--..++
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55566666666666666666666655554444444
No 171
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.50 E-value=87 Score=34.86 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=44.7
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHHHhhhhc
Q 013954 301 EKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVR 369 (433)
Q Consensus 301 EkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~ 369 (433)
...+.+++....--+..+.|++-++++.|+.++|...|+++....+ .|||=|.+.+...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~----------fYG~LAa~~Lg~~ 390 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRG----------FYPMVAAQRLGEE 390 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------cHHHHHHHHcCCC
Confidence 3344556665555678999999999999999999999999954321 7888777766544
No 172
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.39 E-value=40 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
+..|+.+..++..|+|.+|++.|..++..
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45666666666666666666666655544
No 173
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=56.66 E-value=31 Score=40.48 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHH------------HHhcCChHHHHHHHHHHhc
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSIC------------QDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiA------------ydA~GR~~EAiaLYkkL~s 343 (433)
.|+.++++|+|++|++++.+|+.+.+.++-|= |.+.-++++. .++++..++|+.+++.|..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777777777777777777777777777654 5555555543 3555667778888888763
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=56.27 E-value=76 Score=29.32 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC---------------hHHHH
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR---------------PKEAR 335 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR---------------~~EAi 335 (433)
|--+-..+..|+.|...|.+|+|.+|+..++.=+.+=|..-.+.. |..--++|+-...+ ..+|.
T Consensus 41 P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY-a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~ 119 (142)
T PF13512_consen 41 PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY-AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF 119 (142)
T ss_pred CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH-HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH
Confidence 333334467899999999999999999999999988877776662 22223333333332 67899
Q ss_pred HHHHHHh-cCCCHHHHHHHHH
Q 013954 336 IMYEKLQ-SHPNALVSKRARQ 355 (433)
Q Consensus 336 aLYkkL~-sHP~~eVrKQAkr 355 (433)
.-.++|. .+|+-+-...|++
T Consensus 120 ~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 120 RDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHHCcCChhHHHHHh
Confidence 9999996 7999887766654
No 175
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.20 E-value=59 Score=36.41 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHH
Q 013954 243 TAEARAAKEERTRQLLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 317 (433)
Q Consensus 243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGea 317 (433)
+-|.....+...+-.+.+++...-+.+.+. +.+-..-.....+.+|..++|++-++.+++++++-||.+.+=+
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~-- 282 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP-- 282 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--
Confidence 334444444455555567777777777663 2233345566799999999999999999999999999998744
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhh
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMF 358 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLly 358 (433)
+.++ ||--+|...+=.-|=-+|. .||+..|+=-|=-+-|
T Consensus 283 -~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 283 -LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred -HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 5667 7778999998888888996 7999988755544444
No 176
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=56.16 E-value=23 Score=38.38 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhC-CchhhhhhHHHHHHhhccccc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS-GKLKEALPFYEKVMNKMVFKS 311 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amer-GkYreAV~~lEkA~~~v~~~S 311 (433)
-..+..-+.|-+|-.++ .....++.+++..+..+|.+ |+|.+|++.-..|++.+.+.+
T Consensus 492 i~~A~L~E~~iQYaNRY-----R~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~ 550 (560)
T PF06160_consen 492 IDNATLAEQLIQYANRY-----RSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGA 550 (560)
T ss_pred HHHHHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCH
Confidence 34455666677776665 33457888999999999999 999999999999999998765
No 177
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.78 E-value=79 Score=29.55 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=17.2
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
-.|..+|..|..-.|+-+|.+|+.++
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 34666777777777777777765543
No 178
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.71 E-value=49 Score=27.61 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=43.2
Q ss_pred hhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHHHH
Q 013954 296 ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 296 AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLEAp 363 (433)
.+..|+++++.-|-.. ++.+.||.+|=+.|+.++|++.+-.+. +|+..+=-.-=+.|+=+|++.
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3566777777655443 889999999999999999999998885 566553222224566666654
No 179
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.61 E-value=65 Score=34.41 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc---------hhHHHHHH-HHHH
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---------LHGLAALQ-WSIC 324 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~---------LGGeaqLw-LAiA 324 (433)
+..|..-.++.|+.+ +..+..|+-++-.|+.|.|..|-.+|=--..+++..-+ |..|+-++ |-.|
T Consensus 112 ~~~l~~L~e~ynf~~-----e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A 186 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTP-----ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGA 186 (432)
T ss_pred HHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHH
Confidence 345555555555543 46778999999999999999999988777777765544 33455544 8999
Q ss_pred HHhcCChHHHHH
Q 013954 325 QDSLHRPKEARI 336 (433)
Q Consensus 325 ydA~GR~~EAia 336 (433)
+|-++|..|-|+
T Consensus 187 ~edL~rLre~ID 198 (432)
T KOG2758|consen 187 LEDLTRLREYID 198 (432)
T ss_pred HHHHHHHHHHHc
Confidence 999999777553
No 180
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.35 E-value=42 Score=33.03 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCH
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNA 347 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~ 347 (433)
+.--.-..|..++..+|.|+|..|+..|..+++. +..+.|.-.+.+-||-.+=..|..|+|+.+-...+-|--.
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 4444556788899999999999999999988865 3456888899999999999999999999998888877543
No 181
>PRK05685 fliS flagellar protein FliS; Validated
Probab=54.30 E-value=79 Score=28.10 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHHHHh----hcCCCCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cccchhHHHHHHHHH
Q 013954 258 LAAYKK----SVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSI 323 (433)
Q Consensus 258 LaaYrk----~~Gl~Vdp~-----~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~-----~~S~LGGeaqLwLAi 323 (433)
.++|+. ..=.+.+|. +.+.+-..++.++.+++.|++.++-.++-+|.+.+. .+.+-||++.=+|.-
T Consensus 7 ~~~Y~~~~~~~~v~tasp~~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~ 86 (132)
T PRK05685 7 YQAYQQVSVESQVSSASPHKLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSA 86 (132)
T ss_pred HHHHHhccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH
Confidence 356765 332334444 337777888899999999999999999999987663 445668999888888
Q ss_pred HHHhcC
Q 013954 324 CQDSLH 329 (433)
Q Consensus 324 AydA~G 329 (433)
-|+-+-
T Consensus 87 LY~y~~ 92 (132)
T PRK05685 87 LYDYMI 92 (132)
T ss_pred HHHHHH
Confidence 777543
No 182
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.92 E-value=20 Score=29.81 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..-+..|+-+|..||.+|||..|+.-
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566789999999999999999863
No 183
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=35 Score=31.39 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cccchhHHHHHHHHHHHH
Q 013954 257 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQD 326 (433)
Q Consensus 257 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAyd 326 (433)
.+.+|+...=.+-.|. +.+-|-+.+..++.+|++|++.++.+++-+|.+.+. .+-+-||++.-.|---|+
T Consensus 6 ~~~aY~qn~V~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~ 85 (132)
T COG1516 6 AYQAYQQNQVNTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYD 85 (132)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHH
Confidence 4556765532222232 337888999999999999999999999999988763 445667888887777776
Q ss_pred hcCChHHHHHHHH-HHhc--CCCHHHHHHHHHHhhHHH
Q 013954 327 SLHRPKEARIMYE-KLQS--HPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 327 A~GR~~EAiaLYk-kL~s--HP~~eVrKQAkrLlyiLE 361 (433)
=+-| .|.+ .|+. +--.+|...-++|+.+++
T Consensus 86 y~~~-----rL~~ANl~nd~~~i~eV~~ll~~l~eaW~ 118 (132)
T COG1516 86 YMVR-----RLVQANLKNDASKIDEVIGLLRELREAWK 118 (132)
T ss_pred HHHH-----HHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 4332 1111 1122 233577788888888876
No 184
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.22 E-value=44 Score=37.65 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 314 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG 314 (433)
.|+.|..+|.-|+|.+|+.-||+..+.++..+-++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQESSVF 594 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence 44455555555555555555555555555544443
No 185
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.28 E-value=20 Score=32.70 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
+..++.++.+++.|+|+-|.+++..++..=+.+. ++.--+|-||+++|...+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999877554433 466667777777776543
No 186
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.19 E-value=63 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhhHHH
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLlyiLE 361 (433)
-.++|+++=.+|+.++|+..|+.| +.+|+- .||+.|.-.++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence 457999999999999999999998 578875 47888877666
No 187
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=49.76 E-value=48 Score=36.66 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.....+.-+-..|+.++||.+|...|...+..+.++ |.-+|..||=.+++..|++++-.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345567778889999999999999999988878877 8888999999999999999886664
No 188
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=49.42 E-value=71 Score=30.32 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
..+.+..-++-++.+...|.+..|..++..+...-...+.+.-.+.+..|-.+-+-|++.+|+.+-+.+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44666778889999999999999999999998877777777788888888888899999999998877765
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=49.32 E-value=46 Score=34.00 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhccccc-chhHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-ELHGLA 317 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S-~LGGea 317 (433)
.=+-.|..+|..|++..|+..|.+|..+.+.|. .++|.+
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345679999999999999999999999999887 445433
No 190
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=49.15 E-value=74 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
|..-..+++.|+.++.+|+.|+|.+|..+.+.|...
T Consensus 39 p~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 39 PVELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445588999999999999999999999999987655
No 191
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=48.94 E-value=1.2e+02 Score=27.38 Aligned_cols=63 Identities=8% Similarity=0.176 Sum_probs=41.3
Q ss_pred HHHHHHhcCChHHHH-HHHHHHhcCCCHHHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHhhccccc
Q 013954 321 WSICQDSLHRPKEAR-IMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTN 391 (433)
Q Consensus 321 LAiAydA~GR~~EAi-aLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af~~~k~~ 391 (433)
+-.|++.-.=+||.. .||+|+..||+.+-..++=+||..+=+- ++.+....+|...|......
T Consensus 52 ~~~~~~~~~LrDEiy~QLiKQtt~Np~~~s~~rgW~Ll~l~~~~--------FpPS~~l~~yL~~~l~~~~~ 115 (144)
T smart00139 52 LQKGLAHPELRDEIYCQLIKQLTDNPSRQSEERGWELLYLCTSL--------FPPSERLLPYLLQFLSRRAD 115 (144)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHhH--------cCChHHHHHHHHHHHHhcCC
Confidence 344555555566654 4899999999997766666665554322 55566788888887776543
No 192
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=48.86 E-value=26 Score=28.51 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+...++.|...-..|+|.+|+.+|..+++.+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34455556666666677777777776665544
No 193
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=48.29 E-value=30 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+...++.|...=..|.|.+|+.+|..|++.+
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44555666666667788888888887776665
No 194
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=48.09 E-value=60 Score=29.48 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=60.7
Q ss_pred hcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHHHhhhhccc---CCCCcchHHHHHHhhcccccccCcccC--chh
Q 013954 327 SLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSS---SDKNTDYRNFFEAFVEDKTNYPLQEAG--SEE 401 (433)
Q Consensus 327 A~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~~~---~~~~t~Yd~Yf~af~~~k~~y~~~e~~--~~e 401 (433)
++-+.++=.++|..|-.|++.+|.|.|=+-++.+.-+-+.+-... .-+.+ +|-|.=+.+...++. .++
T Consensus 11 ~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd~-------~frdeL~~f~~~~~~~~I~~ 83 (141)
T PF07539_consen 11 SLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDDK-------TFRDELTTFNLSDESSVIEE 83 (141)
T ss_pred HHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCcc-------hHHHHHHhhcccCCcCCCCH
Confidence 567888999999999999999999999999999987766654444 11222 344444455555433 556
Q ss_pred hhhhhhHHHHHHHHhhHH
Q 013954 402 GALTQALPYMIFLASPIF 419 (433)
Q Consensus 402 ~~l~q~l~y~~~l~sPi~ 419 (433)
+.-.+++|+++=|+.+-+
T Consensus 84 ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 84 EHRPELMPVVLRILYGKM 101 (141)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 666777888877776543
No 195
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.76 E-value=61 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 013954 319 LQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkk 340 (433)
+..|+-+|..|+.+||+.+|.+
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3344556666666666666543
No 196
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.58 E-value=71 Score=34.74 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHH
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI 323 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~-Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAi 323 (433)
..+...+..-|..||.+. .|+-++.++.+ |+-++..|++..|+..|-.|.+.| |..+--+.||+..
T Consensus 127 ~~~le~L~~eLk~yK~n~-------iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC---Ts~khvInm~ln~ 193 (466)
T KOG0686|consen 127 VLKLEKLDNELKSYKDNL-------IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYC---TSAKHVINMCLNL 193 (466)
T ss_pred HHHHHHHHHHHHHhhcch-------hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhh---cchHHHHHHHHHH
Confidence 445556666677777443 66766766655 999999999999999999999999 5566666666544
No 197
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.69 E-value=37 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
...+.|..+=+.|+|.+|+.+|..+++.+
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455555566777777777777766554
No 198
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=46.64 E-value=37 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+.+.++.|..+=..|+|.+|+.+|..|++.+
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34445555666666788888888888876655
No 199
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=46.36 E-value=47 Score=36.44 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=55.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--------------HHHHHHHHHHHHhcCCh
Q 013954 266 GLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--------------GLAALQWSICQDSLHRP 331 (433)
Q Consensus 266 Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--------------GeaqLwLAiAydA~GR~ 331 (433)
.+...|...+-++-+|+++..-|.+|+|..|.--|-.|+++|+-.--++ .-+.-.|++||=-+++.
T Consensus 165 ~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp 244 (569)
T PF15015_consen 165 NFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP 244 (569)
T ss_pred CcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 3455677888888999999999999988888888888888886443333 34556799999999998
Q ss_pred HHHHHH
Q 013954 332 KEARIM 337 (433)
Q Consensus 332 ~EAiaL 337 (433)
+-|+--
T Consensus 245 dlALnh 250 (569)
T PF15015_consen 245 DLALNH 250 (569)
T ss_pred chHHHH
Confidence 877643
No 200
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=45.67 E-value=92 Score=36.58 Aligned_cols=61 Identities=28% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH-HHHHHHhcCChHHHHHHHHHH-hcCCCHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ-WSICQDSLHRPKEARIMYEKL-QSHPNALV 349 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw-LAiAydA~GR~~EAiaLYkkL-~sHP~~eV 349 (433)
|-.++..|++.+|+..||.. +..... -+-.|+ +..||+-+|+.++|..+|++. +..|+.+.
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-~~~~~~----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eel 112 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-YGLKGT----DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEEL 112 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-ccCCCC----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHH
Confidence 56778899999999888774 222222 334444 899999999999999999998 48998553
No 201
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.29 E-value=1.2e+02 Score=32.57 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc
Q 013954 271 PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 310 (433)
Q Consensus 271 p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~ 310 (433)
+-.-....+.++.|-++|..|++.+|+..|..++-.+++-
T Consensus 198 ~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 198 PLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp ---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhee
Confidence 3344667789999999999999999999999988775543
No 202
>PLN03077 Protein ECB2; Provisional
Probab=44.89 E-value=86 Score=34.75 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=32.2
Q ss_pred hCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013954 289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 346 (433)
Q Consensus 289 erGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 346 (433)
..|.+.+|..+|+...+.-+..-. -+.--.++.+|-..|+.+||..+++++...|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 345555555555554422211111 13344567788889999999999988643333
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.77 E-value=2e+02 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..|+-.+.-+++.+||+.|++||+.-.- -...........++...-|
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhhh
Confidence 3456688889999999999999999987644 4455444444455554444
No 204
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=44.33 E-value=8.7 Score=41.52 Aligned_cols=28 Identities=46% Similarity=0.729 Sum_probs=23.6
Q ss_pred cccccccc-ccccccccCCCCCCccccCC
Q 013954 204 ENLEFYKP-KVSTWGVFPRPGNISKTFGG 231 (433)
Q Consensus 204 ~~~d~YKP-kVsTWGvFPRP~NISkayGG 231 (433)
.+.+.|+= =++||||-|||.+|--.|||
T Consensus 381 fn~~~y~e~C~~~~~v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 381 FNSESYQEGCMQTFGVTPRPKWITTEFGG 409 (492)
T ss_pred CCHHHHHHHHHHhcCCCCCCcceehhhcc
Confidence 45566666 58999999999999999988
No 205
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=43.49 E-value=54 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcC------Ch----HHHHHHHHHHhcCCCHHHHHHHHHHhhHHH
Q 013954 316 LAALQWSICQDSLH------RP----KEARIMYEKLQSHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 316 eaqLwLAiAydA~G------R~----~EAiaLYkkL~sHP~~eVrKQAkrLlyiLE 361 (433)
.+..|+..+.+..+ .. +....+-.++...++++||+.|++++..|.
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56678888888888 11 456666677779999999999999999985
No 206
>PF15469 Sec5: Exocyst complex component Sec5
Probab=43.39 E-value=2.4e+02 Score=25.67 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHH
Q 013954 245 EARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC 324 (433)
Q Consensus 245 EEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiA 324 (433)
.+++.+-+.+...|.+++-=..|. ..=..++.+|.|..+|..|.+|..+....-.--.-.+--|.-|
T Consensus 67 ~~k~~~l~~~l~~l~r~~flF~LP-------------~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~ev 133 (182)
T PF15469_consen 67 REKADKLRNALEFLQRNRFLFNLP-------------SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEV 133 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345556666666666665332211 1123457899999999999999887754321112222224444
Q ss_pred HHhcCChHHHHHHHHHHhcCC
Q 013954 325 QDSLHRPKEARIMYEKLQSHP 345 (433)
Q Consensus 325 ydA~GR~~EAiaLYkkL~sHP 345 (433)
-.-+++.. ..|+++|...|
T Consensus 134 e~ii~~~r--~~l~~~L~~~~ 152 (182)
T PF15469_consen 134 EKIIEEFR--EKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHH--HHHHHHHhCCC
Confidence 44443333 37888887666
No 207
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.34 E-value=38 Score=37.60 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh--cCCCHHHHHHHHHHhhHH
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SHPNALVSKRARQFMFSF 360 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sHP~~eVrKQAkrLlyiL 360 (433)
.|..+|-.|.|..|.++|..|+..= .---++-+.....++++|+.+||+..+=+|- -.-+.+|--|-..+--.|
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nd----asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNND----ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCc----hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4778899999999999999987643 2234667777888999999999999998884 355677777766666666
Q ss_pred H
Q 013954 361 Q 361 (433)
Q Consensus 361 E 361 (433)
|
T Consensus 572 e 572 (840)
T KOG2003|consen 572 E 572 (840)
T ss_pred h
Confidence 5
No 208
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=43.32 E-value=42 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
+.+.++.|..+=+.|.|.+|+.+|..|++.+
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3334444555555677777777776665554
No 209
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=43.27 E-value=10 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=8.3
Q ss_pred HHHHHHhhHHHHHH
Q 013954 410 YMIFLASPIFVILL 423 (433)
Q Consensus 410 y~~~l~sPi~~v~~ 423 (433)
|++|++.|||+|+.
T Consensus 1 y~~~~iV~i~iv~~ 14 (50)
T PF12606_consen 1 YIAFLIVSIFIVMG 14 (50)
T ss_pred CeehHHHHHHHHHH
Confidence 45666666666543
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=43.15 E-value=38 Score=37.17 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 334 (433)
.-|-+.-.+|.+++..|+++..|.+|++|++-=.-.-+.-.-+--||..||--++..+.|
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kA 74 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKA 74 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHH
Confidence 458888889999999999999999999998643322222233444555555555554444
No 211
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.07 E-value=41 Score=26.10 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 013954 317 AALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 317 aqLwLAiAydA~GR~~EAiaLYkk 340 (433)
-.++.|+-+|..|+.++|+.+|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346778889999999999999986
No 212
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=1.7e+02 Score=32.90 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh--cC
Q 013954 267 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ--SH 344 (433)
Q Consensus 267 l~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~--sH 344 (433)
-+||.+++-.++..+=.|--.|-.|.+-.|-+.|.+|+.+-+..-.| -|-++.+|--..++++-+.-+.+-. ..
T Consensus 316 n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~d~~~~~~~~~~F~~A~~ldp 391 (606)
T KOG0547|consen 316 NEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYADENQSEKMWKDFNKAEDLDP 391 (606)
T ss_pred cccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHhhhhccHHHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999999999887766655 3444444444444444444444332 23
Q ss_pred CCHHHHHHHHHHhhHHH
Q 013954 345 PNALVSKRARQFMFSFQ 361 (433)
Q Consensus 345 P~~eVrKQAkrLlyiLE 361 (433)
-|+.|=-+=-||+|+||
T Consensus 392 ~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred CCCchhHhHHHHHHHHH
Confidence 34555555555555554
No 213
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.21 E-value=44 Score=27.69 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+.+..+.+..+=..|+|.+|+.+|..|++.+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33445555666667788888888888877765
No 214
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=41.89 E-value=30 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhhHHHHHHHHH
Q 013954 406 QALPYMIFLASPIFVILLIAV 426 (433)
Q Consensus 406 q~l~y~~~l~sPi~~v~~~A~ 426 (433)
.++.+++|++.||+.|++++.
T Consensus 11 ~~flfl~v~l~PiLsV~~Vg~ 31 (47)
T TIGR02972 11 KALGFIIVVLFPILSVAGIGG 31 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999875
No 215
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=41.10 E-value=30 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
.|..|+++|-.|..++|+++|++=..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45678899999999999999998543
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=39.74 E-value=68 Score=34.83 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.++.|++-+ .++|..-+....-|..|-.+...|++.+|++.|++|+++. +..+. .+.-.-.++.+
T Consensus 86 ~~lGryeEAIa~f~rAL--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~---~i~~DpdL~pl 158 (453)
T PLN03098 86 FSKGRVKDALAQFETAL--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFS---TILNDPDLAPF 158 (453)
T ss_pred HHcCCHHHHHHHHHHHH--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHH---HHHhCcchhhh
Confidence 45677889999998555 6666654333446889999999999999999999999972 11121 12222234556
Q ss_pred CChHHHHHHHHHHh
Q 013954 329 HRPKEARIMYEKLQ 342 (433)
Q Consensus 329 GR~~EAiaLYkkL~ 342 (433)
.+..+...|.+-+.
T Consensus 159 R~~pef~eLlee~r 172 (453)
T PLN03098 159 RASPEFKELQEEAR 172 (453)
T ss_pred cccHHHHHHHHHHH
Confidence 66666666666553
No 217
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=39.63 E-value=35 Score=27.38 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhhHHHHHHHHHh
Q 013954 406 QALPYMIFLASPIFVILLIAVQ 427 (433)
Q Consensus 406 q~l~y~~~l~sPi~~v~~~A~~ 427 (433)
.++.+++|++.||+.|.+++.-
T Consensus 19 ~~flfl~~~l~PiL~v~~Vg~Y 40 (56)
T PF06796_consen 19 KAFLFLAVVLFPILAVAFVGGY 40 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998753
No 218
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=39.25 E-value=3.7e+02 Score=31.28 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
..+...+|-+.+-|===|-+.+.+-+-|..--.-++.-++..|-.+||+|++.|| ....--+.|.+|--=|-.|--.-
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 4456677877776666677788888888877777888899999999999999998 44455677888888888899999
Q ss_pred HHHHHHHHhc
Q 013954 334 ARIMYEKLQS 343 (433)
Q Consensus 334 AiaLYkkL~s 343 (433)
||++|++-.+
T Consensus 605 amsiyerat~ 614 (835)
T KOG2047|consen 605 AMSIYERATS 614 (835)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 219
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=39.05 E-value=1.9e+02 Score=23.07 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
...++.-++.++.+++.|.|..|+-+...|+.+.
T Consensus 5 ~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~ 38 (118)
T PF05168_consen 5 LEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKA 38 (118)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999888877654
No 220
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=38.80 E-value=98 Score=31.92 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=32.1
Q ss_pred HHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHH
Q 013954 325 QDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 325 ydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp 363 (433)
++.+--+.=.+.++..|+.||+.+|++.|+-|+=++.+-
T Consensus 39 ~ell~~Tr~g~~vn~~~Kk~~n~ev~~~ak~Lik~Wkk~ 77 (296)
T KOG1105|consen 39 LELLQETRTGMGVNEVLKKHKNEEVRSLAKKLIKSWKKL 77 (296)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 444455566678899999999999999999999998865
No 221
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.79 E-value=37 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 013954 319 LQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkk 340 (433)
+..|+.+|..|+.++|+.+|.+
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~ 33 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKK 33 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4567889999999999999976
No 222
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=38.64 E-value=1.5e+02 Score=25.51 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cccchhHHHHHHHHHHHHhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~ 328 (433)
.+.+-+.++.+..+++.|++..+-.++-+|.+.+. .+-+-||++.-.|.--|+-+
T Consensus 26 yd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~ 85 (122)
T PF02561_consen 26 YDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYM 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Confidence 46777888999999999999999999999977653 34466899998888888754
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.61 E-value=41 Score=35.70 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-----hcCCCHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-----QSHPNALVSKR 352 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-----~sHP~~eVrKQ 352 (433)
....|-.+|..|+|.+||+-|..|++--.+++- ++..+|.|+=.-++.+.|+.+-..+ +.||.-.|-.+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 455678899999999999999999987777664 5678899999999999999877665 46998776543
No 224
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=38.31 E-value=38 Score=25.88 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHH
Q 013954 406 QALPYMIFLASPIFVILLIAV 426 (433)
Q Consensus 406 q~l~y~~~l~sPi~~v~~~A~ 426 (433)
.++.++++++.||+.|.+++.
T Consensus 6 ~~flfl~~~l~PiLsV~~V~~ 26 (42)
T TIGR02973 6 NTFLFLAAVIWPVLSVITVGG 26 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999875
No 225
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.20 E-value=3.9e+02 Score=26.67 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc----------cchhHHHHHHHH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----------SELHGLAALQWS 322 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~----------S~LGGeaqLwLA 322 (433)
.....|...-++.|++++++.-..+-+ .-.|.++.++..+|+....+... +...-...+.++
T Consensus 171 ~l~~~l~~~~~~~g~~i~~~al~~l~~--------~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~ 242 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFEDDALHIIAQ--------KADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVT 242 (367)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 345556666667899998875444322 24589999999999987554322 011111222232
Q ss_pred HHHHhcCChHHHHHHHHHHh---cCCCHHHHHHHHHH
Q 013954 323 ICQDSLHRPKEARIMYEKLQ---SHPNALVSKRARQF 356 (433)
Q Consensus 323 iAydA~GR~~EAiaLYkkL~---sHP~~eVrKQAkrL 356 (433)
-|. ..|+..+|+.+|+.|. .+|..=+.--++++
T Consensus 243 ~ai-~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~f 278 (367)
T PRK14970 243 DLI-LENKIPELLLAFNEILRKGFDGHHFIAGLASHF 278 (367)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 3478999999999984 35544333333333
No 226
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=37.91 E-value=4.6e+02 Score=26.80 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHHHHHHH
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNALVSKRA 353 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~eVrKQA 353 (433)
+....+...|.++.++++++.-...=++... +..++--+|...|+...||..|++|.+ -|.+++++.=
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3467888999999999999988777766654 455667789999999999999999986 3555555543
Q ss_pred HH
Q 013954 354 RQ 355 (433)
Q Consensus 354 kr 355 (433)
.+
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 227
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.68 E-value=82 Score=35.21 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhccccc----chh--------------------------HHHHHHHHHHHHhc
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELH--------------------------GLAALQWSICQDSL 328 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S----~LG--------------------------GeaqLwLAiAydA~ 328 (433)
..|++|..+|+.|.+.+|+=.||.|+..=|..- .|| =++-|-||+||-.-
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 579999999999999999999999987654322 122 14455566777666
Q ss_pred CChHHHHH-HHHHHhcCC
Q 013954 329 HRPKEARI-MYEKLQSHP 345 (433)
Q Consensus 329 GR~~EAia-LYkkL~sHP 345 (433)
|-..+|.. ||+.|+.||
T Consensus 367 g~q~~Al~~L~~Wi~~~p 384 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKP 384 (579)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 66555544 455566664
No 228
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.54 E-value=88 Score=31.79 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhh-cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNK-MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~-v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+.+..++...+++.|.+.+|+..|+..+.. -..+.++. .+|-+|-.++..|+.+=|+.+|++|.
T Consensus 213 ~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~--~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 213 WEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFH--WRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566778888899999999998875442 33333433 34445666788899999999998884
No 229
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.07 E-value=96 Score=35.72 Aligned_cols=121 Identities=9% Similarity=0.118 Sum_probs=87.9
Q ss_pred ccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHH-HHHHHHHHHHHHHhCCchhhh
Q 013954 218 VFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKS-ECEKALKDGDSLMDSGKLKEA 296 (433)
Q Consensus 218 vFPRP~NISkayGGGR~IrpGe~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~-e~eea~~~Gk~amerGkYreA 296 (433)
+|-|-.||++----|-+|+ -+-.++...++|+.+..++.. +|..+..+.+. .-.-....+...|+--+|-.|
T Consensus 301 ~~~~~~~~~~g~~~~sr~l-----~~~~~~L~~dE~I~e~F~~~~--t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s 373 (872)
T KOG4814|consen 301 LNSKNDSKFLGKAICSRFL-----ITTQSKLMNDEEIAESFENFS--TQMELTKEAISCIHTLLWNTAKKLFKMEKYVVS 373 (872)
T ss_pred HhhhcccchhhhhhhhHHH-----HHHHHHHhhHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555422333333 356677888888999988885 55555555442 222345778999999999999
Q ss_pred hhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954 297 LPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 345 (433)
Q Consensus 297 V~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 345 (433)
+++|+.-|..++-.- +.=...|=.++.||=.+.+.|.|...|+.-.+|-
T Consensus 374 ~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 374 IRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 999999988876542 2227778889999999999999999999998887
No 230
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=1.2e+02 Score=33.75 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQF 356 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrL 356 (433)
.++.|+..=+-+++.+|..+||+-++-...-+..+ =++.+|||+=+-.++..++|-.-|.++-.- ...+..|++|
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~L 546 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKAL 546 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHH
Confidence 45667777778889999999999655432223333 378899999888999999987766666544 3445566665
Q ss_pred h
Q 013954 357 M 357 (433)
Q Consensus 357 l 357 (433)
+
T Consensus 547 l 547 (559)
T KOG1155|consen 547 L 547 (559)
T ss_pred H
Confidence 4
No 231
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=36.50 E-value=70 Score=29.35 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh--------cCCCCCcchH----HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954 242 ETAEARAAKEERTRQLLAAYKKS--------VGLNVDPKLK----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 309 (433)
Q Consensus 242 EteEEkaaRe~rtke~LaaYrk~--------~Gl~Vdp~~k----~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~ 309 (433)
.+-+++..-.+...++|.+-+.. .|.+|+--+- .....+++....+++.|+|.+|...|..|++-+.+
T Consensus 70 ~~~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~lv~ 149 (155)
T PF10938_consen 70 VPTPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGLVF 149 (155)
T ss_dssp ---HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EE
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCeEE
Confidence 34556666666667777666544 4555554433 77788899999999999999999999998876655
Q ss_pred cc
Q 013954 310 KS 311 (433)
Q Consensus 310 ~S 311 (433)
-|
T Consensus 150 ~s 151 (155)
T PF10938_consen 150 DS 151 (155)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 232
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.34 E-value=47 Score=27.61 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF 309 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~ 309 (433)
.+...++.|-..=+.|.|.+|+++|..|++++-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555566666789999999999999888754
No 233
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=36.11 E-value=1.4e+02 Score=30.39 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPN 346 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~ 346 (433)
+..-..|-.++..|+..+|-..|-+|+++.+..-..=+-+.||+. --|+.++|.++-......|.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence 334556888899999999999999999888777665555554444 48999999999888876555
No 234
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.90 E-value=54 Score=20.42 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=18.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhc
Q 013954 321 WSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 321 LAiAydA~GR~~EAiaLYkkL~s 343 (433)
+..+|-..|+.++|..+|+++.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567779999999999999874
No 235
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.74 E-value=73 Score=33.04 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=57.3
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcc--hH------------------HHHHHHH-----------HHHHHHH
Q 013954 240 VLETAEARAAKEERTRQLLAAYKKSVGLNVDPK--LK------------------SECEKAL-----------KDGDSLM 288 (433)
Q Consensus 240 ~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~--~k------------------~e~eea~-----------~~Gk~am 288 (433)
.|-.+=-++++..+..+.|..|-+-. .+||+ +. .-|+.++ ..|..+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI--~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAI--ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34344456899999999999997655 55543 11 2233333 2388899
Q ss_pred hCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 289 erGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
..|+|.+|++.|.||+++=|-+- ..-=.|-+|-+.++..+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne----~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNE----SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhcCCC
Confidence 99999999999999998887765 22222445555444433
No 236
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=4.4e+02 Score=30.13 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=54.1
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHH
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLE 361 (433)
+.+--+|.-++..+|+..++ -++..+.+ .++=++| +|| .+||.++|.++|+.|.+|-..+..-+=+ ..++-=
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-~~~~~~~~-ll~L~AQ----vlY-rl~~ydealdiY~~L~kn~~dd~d~~~r-~nl~a~ 155 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-GLDRLDDK-LLELRAQ----VLY-RLERYDEALDIYQHLAKNNSDDQDEERR-ANLLAV 155 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-cccccchH-HHHHHHH----HHH-HHhhHHHHHHHHHHHHhcCCchHHHHHH-HHHHHH
Confidence 33445677888888888887 23333211 1222233 233 4899999999999998777766655432 222222
Q ss_pred HHHhhhh--cccCC--CCcchHHHHHH
Q 013954 362 AMEMMKV--RSSSD--KNTDYRNFFEA 384 (433)
Q Consensus 362 Ap~llKv--~~~~~--~~t~Yd~Yf~a 384 (433)
++ .+-+ .+..+ ..+.|+-+|..
T Consensus 156 ~a-~l~~~~~q~v~~v~e~syel~yN~ 181 (652)
T KOG2376|consen 156 AA-ALQVQLLQSVPEVPEDSYELLYNT 181 (652)
T ss_pred HH-hhhHHHHHhccCCCcchHHHHHHH
Confidence 22 1222 22322 46688887754
No 237
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.30 E-value=1e+02 Score=25.19 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHHH
Q 013954 320 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRARQ 355 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAkr 355 (433)
..|+-.|..|+.++|+.+|.+ |+.-+++..+..-++
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 456889999999999999976 445677776554443
No 238
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.26 E-value=2.4e+02 Score=28.11 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
+..|.+.++++-+-..-+--|. --+--..++.+-.+|+.|.|++-..-.|. +...++.+--.+.=-|..+-=..|+
T Consensus 107 kgdta~AV~aFdeia~dt~~P~-~~rd~ARlraa~lLvD~gsy~dV~srvep---La~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 107 KGDTAAAVAAFDEIAADTSIPQ-IGRDLARLRAAYLLVDNGSYDDVSSRVEP---LAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred cccHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHHHhccccHHHHHHHhhh---ccCCCChhHHHHHHHHhHHHHhccc
Confidence 3445555655543222222222 22233567778888999998887766665 2222333332333334444455799
Q ss_pred hHHHHHHHHHHh--cCCCHHHHHHHHHHh
Q 013954 331 PKEARIMYEKLQ--SHPNALVSKRARQFM 357 (433)
Q Consensus 331 ~~EAiaLYkkL~--sHP~~eVrKQAkrLl 357 (433)
+..|..++.+|. ..-...||..|+-||
T Consensus 183 ~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 183 FAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred hHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 999999999997 455678998888765
No 239
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.92 E-value=1.4e+02 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHH
Q 013954 319 LQWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRAR 354 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAk 354 (433)
+..|+-.|..|+.++|+.+|.+ ++.-|++..++.-+
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3446778999999999999976 33456766544433
No 240
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=34.89 E-value=53 Score=29.24 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=40.2
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHhcCCCHHHHHHHHHHhhHH--
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQSHPNALVSKRARQFMFSF-- 360 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiL-- 360 (433)
=..|+..|+++.+=.+|.+.+... +-+ +|-.+.+..--.|-+|||++||-+|....-.+
T Consensus 15 q~~A~~~~d~~~~Nr~~~k~~~~~------------------~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L~~~p 76 (106)
T PF09450_consen 15 QGEAIDRGDARTANRLYDKMIRIY------------------DELKSRGGDQRDALLPLLKHPNMQVRLWAAAHTLRYAP 76 (106)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHH------------------HHHHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTTTT-H
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH------------------HHHHhcCcchHHHHHHHHcCCChhHHHHHHHHHHHhCH
Confidence 356788999998888887754332 111 33333444455677999999999998765444
Q ss_pred -HHHHhhh
Q 013954 361 -QAMEMMK 367 (433)
Q Consensus 361 -EAp~llK 367 (433)
||-+.|.
T Consensus 77 ~eA~~~Le 84 (106)
T PF09450_consen 77 EEARKVLE 84 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4444443
No 241
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.74 E-value=1.1e+02 Score=33.03 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=73.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHh---------hccccc--chh------------------HHHH
Q 013954 268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMN---------KMVFKS--ELH------------------GLAA 318 (433)
Q Consensus 268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~---------~v~~~S--~LG------------------Geaq 318 (433)
...++.+.++-..|+.|..++.+|+|.++...|..|-. .++.++ -+| |.+.
T Consensus 49 q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n 128 (449)
T COG3014 49 QFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLIN 128 (449)
T ss_pred HhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHH
Confidence 33445556777889999999999999999999987732 333333 122 6888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhh-----HHHHHHhhhhccc--------CC-CCcchHHHHHH
Q 013954 319 LQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMF-----SFQAMEMMKVRSS--------SD-KNTDYRNFFEA 384 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly-----iLEAp~llKv~~~--------~~-~~t~Yd~Yf~a 384 (433)
+.++.-|--.+..+.|+.=..+. -++..+||...| .-+-|+.-|.+-+ +. .+.+|++||..
T Consensus 129 ~YkaLNYm~~nD~~~ArVEfnRa-----n~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~ 203 (449)
T COG3014 129 YYKALNYMLLNDSAKARVEFNRA-----NERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDK 203 (449)
T ss_pred HHHHhhHHHhcchhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999998888888877655443 223334444333 1112222222222 11 46799999998
Q ss_pred hhcc
Q 013954 385 FVED 388 (433)
Q Consensus 385 f~~~ 388 (433)
|...
T Consensus 204 yea~ 207 (449)
T COG3014 204 YEAY 207 (449)
T ss_pred HHhh
Confidence 8664
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=33.68 E-value=1.1e+02 Score=32.53 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh-------HHHHHHHHHHhcC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP-------KEARIMYEKLQSH 344 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~-------~EAiaLYkkL~sH 344 (433)
.++.|-.+|-.++|++|..+|..-.+.- .--++--....|.||..+|+. ++|..++++.-.+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 6788999999999999999999876632 234788889999999999999 9999999988543
No 243
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=33.67 E-value=73 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
+..+..-...+..+=..|+|.+|+-+|.++.+.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4445556667777778999999999999876655
No 244
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.65 E-value=66 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
+.+.++.+..+=..|+|.+|+.+|..+++.+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4455666677778899999999999988765
No 245
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.57 E-value=84 Score=33.13 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHh
Q 013954 312 ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAF 385 (433)
Q Consensus 312 ~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af 385 (433)
.+-|.+. .+|--+|..+||+.||+++. -||--+ +..++|.+. ++.++-.+.-+..|..|....
T Consensus 280 kllgkva----~~yle~g~~neAi~l~qr~ltldpL~e------~~nk~lm~~-la~~gD~is~~khyerya~vl 343 (361)
T COG3947 280 KLLGKVA----RAYLEAGKPNEAIQLHQRALTLDPLSE------QDNKGLMAS-LATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHH----HHHHHcCChHHHHHHHHHHhhcChhhh------HHHHHHHHH-HHHhccchhhhhHHHHHHHHH
Confidence 3445654 44555899999999999985 688765 556777777 677777777777888887754
No 246
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=33.54 E-value=1.7e+02 Score=31.30 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 354 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 354 (433)
...-..++.|+-+|..|-|+.|-..|..-++.= ++-=.+-=+|...|++....+.||..-++|.+|--..-+.+-.
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 445567888999999999999999998876643 3333455568888999999999999999999887776665554
Q ss_pred HH
Q 013954 355 QF 356 (433)
Q Consensus 355 rL 356 (433)
|+
T Consensus 181 qf 182 (389)
T COG2956 181 QF 182 (389)
T ss_pred HH
Confidence 44
No 247
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=32.76 E-value=57 Score=20.23 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=19.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC
Q 013954 321 WSICQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 321 LAiAydA~GR~~EAiaLYkkL~sH 344 (433)
+..+|=..|+.++|..+|+++..+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhHC
Confidence 345677789999999999998753
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=32.45 E-value=1.1e+02 Score=33.47 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
|-.|..++=.|+..+|++++++|+.+-|++-. -+.+++|+-|-|. .+.++||++|-+-+
T Consensus 376 ~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 434 (458)
T PRK11906 376 YYRALVHFHNEKIEEARICIDKSLQLEPRRRK-AVVIKECVDMYVP--NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCchhhH-HHHHHHHHHHHcC--CchhhhHHHHhhcc
Confidence 44466667778888888888888887766532 3566777756553 57788888887654
No 249
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.01 E-value=59 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
...|..-+++++|.+|+.=|++++++
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45788999999999999999998765
No 250
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=31.69 E-value=1.8e+02 Score=25.14 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHhcCChHHHHHHHHHHhcC--CCHHHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHhh
Q 013954 325 QDSLHRPKEARIMYEKLQSH--PNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFV 386 (433)
Q Consensus 325 ydA~GR~~EAiaLYkkL~sH--P~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af~ 386 (433)
+.-+.+.+|.|++|+++.+. ..++.|.++.+++=-+++-.. -|++--.++..+-+++-++.
T Consensus 6 ~tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~-lVDGvPaQGG~~~~i~~~~i 68 (85)
T PF07240_consen 6 ATKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN-LVDGVPAQGGFWGKIVKKII 68 (85)
T ss_pred HHHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh-cccCcCCCCCchHHHHHHHH
Confidence 44567899999999999865 999999999999988887654 34443336666666666554
No 251
>PLN02789 farnesyltranstransferase
Probab=31.67 E-value=1.9e+02 Score=29.36 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=32.4
Q ss_pred HHHHHhCC-chhhhhhHHHHHHhhcccccchhHHHHHHH--HHHHHhcCCh--HHHHHHHHHH-hcCC
Q 013954 284 GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQW--SICQDSLHRP--KEARIMYEKL-QSHP 345 (433)
Q Consensus 284 Gk~amerG-kYreAV~~lEkA~~~v~~~S~LGGeaqLwL--AiAydA~GR~--~EAiaLYkkL-~sHP 345 (433)
|..+...| .|.+++.++++|+..-+-+. ++|- ..+++.+|+. ++++.+|+++ ..+|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 55666666 46777777777766544333 2343 4456666663 5667777444 3454
No 252
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.63 E-value=2.9e+02 Score=22.59 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCCCCcc-hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH--HHHHHHHH
Q 013954 256 QLLAAYKKSVGLNVDPK-LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSIC 324 (433)
Q Consensus 256 e~LaaYrk~~Gl~Vdp~-~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe--aqLwLAiA 324 (433)
+.|..|-.-.+.+.... ...-+...+..+......|.+.+|+..++.|++..-...-..+. +-+|++..
T Consensus 19 d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 19 DALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 34444433343344433 12233346788999999999999999999999988666655554 34444443
No 253
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=31.26 E-value=1.5e+02 Score=29.74 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCHHHHHHHHHHh
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH-PNALVSKRARQFM 357 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH-P~~eVrKQAkrLl 357 (433)
..+-.++..|.-|+.-+|.+.||+.++.-+-.-.-+|. |-++-+|-+.|+..+|.+-++++.+| |.++ .+.+
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-----ar~~ 198 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVAISYYPGPQ-----ARIY 198 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-----HHHH
Confidence 34556788999999999999999999877554444443 45788999999999999999999865 5554 3455
Q ss_pred hHHHHHHhhhhcccCCCCcchHHHHHHhhccccccc
Q 013954 358 FSFQAMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYP 393 (433)
Q Consensus 358 yiLEAp~llKv~~~~~~~t~Yd~Yf~af~~~k~~y~ 393 (433)
|+- | +.+-+-.-..+..|...|+.....+.-|-
T Consensus 199 Y~e--~-La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 199 YAE--M-LAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHH--H-HHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 541 1 11111112256677777777666655554
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.24 E-value=2.3e+02 Score=26.66 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhc---cccc-----chhHHHHHHHHHHHHhcCChHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKM---VFKS-----ELHGLAALQWSICQDSLHRPKEARIM 337 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v---~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaL 337 (433)
-.+|.+|+.-+.-|-|.+|...+-+||+.. |.-- -+-+..--||+-|+--+||.+||+.-
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~s 77 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQS 77 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 357888999999999999999999999863 2222 13357778999999999999999754
No 255
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.08 E-value=72 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
--....|+-+|..|+.+||+.+|+.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~ 31 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKE 31 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3445678999999999999999985
No 256
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=30.97 E-value=3.8e+02 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
.....|-.|-.-+ +.||..... .|+.+..+..-|+-+.||+-|++|+++
T Consensus 53 Q~sDALt~yHaAv--e~dp~~Y~a---ifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 53 QLSDALTHYHAAV--EGDPNNYQA---IFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred hHHHHHHHHHHHH--cCCchhHHH---HHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 4556666776544 666654432 445555555555555555555555443
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=30.82 E-value=3e+02 Score=29.21 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=58.7
Q ss_pred CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh---cCChHHHHHHHHH-Hh--cCCCHHHHHHHHHHhhHHHH-
Q 013954 290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS---LHRPKEARIMYEK-LQ--SHPNALVSKRARQFMFSFQA- 362 (433)
Q Consensus 290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA---~GR~~EAiaLYkk-L~--sHP~~eVrKQAkrLlyiLEA- 362 (433)
--.|..=|.+.|..-..-..+-.-+..|+.++|-|+-- .|.+++|+.++.+ |. ..+++++ |+|=.
T Consensus 154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~--------~gL~GR 225 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT--------LGLLGR 225 (374)
T ss_pred hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH--------HHHHHH
Confidence 34455555555554433222334478899999999999 9999999999988 54 3455552 22211
Q ss_pred HHhh-hhcccCC----CCcchHHHHHHhhccccccc
Q 013954 363 MEMM-KVRSSSD----KNTDYRNFFEAFVEDKTNYP 393 (433)
Q Consensus 363 p~ll-Kv~~~~~----~~t~Yd~Yf~af~~~k~~y~ 393 (433)
--+= -+.+... -..+.+.|-.+|.-+++.|+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 1111 1221111 24467889999999988887
No 258
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.63 E-value=2.1e+02 Score=24.28 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
.+...++++.+|-.++..|++..|...+.++.+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999665
No 259
>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.57 E-value=52 Score=30.11 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALP 298 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~ 298 (433)
...+.++..|- - .|.-+.-..+.++.|+.+|+.|+|.-+-.
T Consensus 33 pkl~~ky~~~G-----k-lP~~sd~l~krlQkgrKyFDSGDYam~KA 73 (121)
T KOG4076|consen 33 PKLKKKYPSYG-----K-LPGGSDFLRKRLQKGRKYFDSGDYAMAKA 73 (121)
T ss_pred HHHHHHHHHhC-----C-CCcccHHHHHHHHhcccccccchHHHHHh
Confidence 34455555552 2 25558999999999999999999976543
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=30.33 E-value=1.8e+02 Score=28.24 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHH-HHHHHHHHHHhCCchhhhhhHHHHHHh
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECE-KALKDGDSLMDSGKLKEALPFYEKVMN 305 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~e-ea~~~Gk~amerGkYreAV~~lEkA~~ 305 (433)
|-+.+.+.+..--+..+-.++++....+. -.-+.|...|+.++|.+|..+|+-++.
T Consensus 218 ~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 218 KIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 34445555555555577778888765554 446889999999999999999998764
No 261
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=30.18 E-value=69 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred HHHhcC-CCHHHHHHHHHHhhHHHHH
Q 013954 339 EKLQSH-PNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 339 kkL~sH-P~~eVrKQAkrLlyiLEAp 363 (433)
.+|..| ++++|++.|++|+=-+..+
T Consensus 26 ~~l~k~~~~~~i~~~A~~Li~~Wk~~ 51 (53)
T PF08711_consen 26 NKLRKHSENPEIRKLAKELIKKWKRI 51 (53)
T ss_dssp HHHHHCTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHh
Confidence 367788 9999999999998655443
No 262
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.15 E-value=3.3e+02 Score=30.14 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHH--HH
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQW--SI 323 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k--~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwL--Ai 323 (433)
..+.+|++.+...|...++-..-.+.. ......|-.+...|..|+|++|.+.|..-+...|-| +-+|- +-
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N------~~~~~~~~~ 348 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN------PYYLELAGD 348 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 456677777777776666555544433 344557888999999999999999999977777733 22221 11
Q ss_pred HHHhcCChHHHHHHHHHHh-cCCCHHH-HH-HHHHHhhH---HHHHHhhhhccc-CC-CCcchHHHHHHhhccc
Q 013954 324 CQDSLHRPKEARIMYEKLQ-SHPNALV-SK-RARQFMFS---FQAMEMMKVRSS-SD-KNTDYRNFFEAFVEDK 389 (433)
Q Consensus 324 AydA~GR~~EAiaLYkkL~-sHP~~eV-rK-QAkrLlyi---LEAp~llKv~~~-~~-~~t~Yd~Yf~af~~~k 389 (433)
.|=..||.++|+..+++.. .-|+.-+ +- .|.-|+=. =||-+.++-... .| +-.+|+-...+..+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 2445899999999999986 5777421 11 11111100 033333332223 45 4567777777766654
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=29.47 E-value=2.2e+02 Score=27.04 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=62.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHH
Q 013954 270 DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALV 349 (433)
Q Consensus 270 dp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eV 349 (433)
-|+..+. .+=+|..+|.||.+.+|+..|..+.+-- ..-+...--+|.|+.+.|...==+--++-|.+.++++.
T Consensus 40 rP~~~e~---d~~dg~l~i~rg~w~eA~rvlr~l~~~~----~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 40 RPNLKEL---DMFDGWLLIARGNYDEAARILRELLSSA----GAPPYGKALLALCLNAKGDAEWHVHADEVLARDADADA 112 (153)
T ss_pred CCCcccc---chhHHHHHHHcCCHHHHHHHHHhhhccC----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhH
Confidence 3554433 4456999999999999999888755432 22244445578999999986544444556678888888
Q ss_pred HHHHHHHhhHHHHHHhhh
Q 013954 350 SKRARQFMFSFQAMEMMK 367 (433)
Q Consensus 350 rKQAkrLlyiLEAp~llK 367 (433)
.--.|.|.=.|+.|....
T Consensus 113 ~~Lv~al~g~~~~~~s~~ 130 (153)
T TIGR02561 113 VALVRALLGAQQPPASVA 130 (153)
T ss_pred HHHHHHHhccccCCcchH
Confidence 888887776666554433
No 264
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.41 E-value=1.8e+02 Score=26.63 Aligned_cols=72 Identities=19% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 354 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 354 (433)
+||-..+ .-..+|+||+|.+|+ ++. ... -.-...=|+|.|==.+|-.+.+-.-..+|...-+++...=|.
T Consensus 39 ~E~v~lI-r~~sLmNrG~Yq~AL--l~~-~~~------~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g~~~~q~Fa~ 108 (116)
T PF09477_consen 39 EEVVALI-RLSSLMNRGDYQEAL--LLP-QCH------CYPDLEPWAALCAWKLGLASALESRLTRLASSGSPELQAFAA 108 (116)
T ss_dssp HHHHHHH-HHHHHHHTT-HHHHH--HHH-TTS--------GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhhHHHHHHH--Hhc-ccC------CCccHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444 356899999999993 222 111 112345689999999999999988888898888887655544
Q ss_pred HH
Q 013954 355 QF 356 (433)
Q Consensus 355 rL 356 (433)
-|
T Consensus 109 ~~ 110 (116)
T PF09477_consen 109 GF 110 (116)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 265
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.01 E-value=2.1e+02 Score=22.49 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHHHHH
Q 013954 320 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSKRAR 354 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrKQAk 354 (433)
..|+-.|-.|+.++|+.+|.+ +..-|++..++.-+
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~ 53 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLR 53 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345778889999999999875 34566666655433
No 266
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=28.45 E-value=55 Score=25.36 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=26.6
Q ss_pred ccchhHHHHHHHHHHHH-hcCChHHHHHHHHHHhcC
Q 013954 310 KSELHGLAALQWSICQD-SLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 310 ~S~LGGeaqLwLAiAyd-A~GR~~EAiaLYkkL~sH 344 (433)
++=.|.++--||.-+.+ .+..++||+.|++.|..|
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~ 51 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDH 51 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHC
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHC
Confidence 44567777777775544 488999999999999754
No 267
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.39 E-value=1.1e+02 Score=32.98 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHH
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLA 317 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGea 317 (433)
....+++.+..|+++|-.+.|..||..|-.|..++ .+++|+.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~---~ei~Ge~ 78 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELS---DEIYGEK 78 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHH---HHHhhhh
Confidence 45678889999999999999999999999998887 4555543
No 268
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.87 E-value=4.2e+02 Score=26.68 Aligned_cols=85 Identities=28% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHh-------CCchhhhhhHHHHHHhhcccccchhHHHHHHHHH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLK--SECEKALKDGDSLMD-------SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSI 323 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k--~e~eea~~~Gk~ame-------rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAi 323 (433)
-..+.+..|+....+.-+.+++ ---+-++-.+..+++ ...+=+|+-.||.++..- .-.=.+.|||+.
T Consensus 150 ~~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s----~~n~~~~LlLvr 225 (365)
T PF09797_consen 150 LAQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKS----PHNYQLKLLLVR 225 (365)
T ss_pred HHHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcC----CCcHHHHHHHHH
Confidence 5678889999877665221122 112233334555553 566677788888776654 555678999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 013954 324 CQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 324 AydA~GR~~EAiaLYkkL 341 (433)
.|--+|-...|..+|..|
T Consensus 226 lY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 226 LYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 999999999999999987
No 269
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=27.56 E-value=51 Score=25.74 Aligned_cols=35 Identities=9% Similarity=-0.208 Sum_probs=26.4
Q ss_pred cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954 309 FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 309 ~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sH 344 (433)
.++=.|.++.-||..+.. +..++||+.|++.|..+
T Consensus 18 ~~~F~G~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~ 52 (77)
T smart00049 18 PNCFTGSELVDWLMDNLE-IIDREEAVHLGQLLLDE 52 (77)
T ss_pred cceeEcHHHHHHHHHcCC-cCCHHHHHHHHHHHHHC
Confidence 445667788888877766 45569999999999754
No 270
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=27.28 E-value=2.9e+02 Score=29.98 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc-----cchhHHHHHHHHHHHHhcCChHHHHHHHH--------HH-
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-----SELHGLAALQWSICQDSLHRPKEARIMYE--------KL- 341 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~-----S~LGGeaqLwLAiAydA~GR~~EAiaLYk--------kL- 341 (433)
.|--.+-.+-..+-+|.+..|...++.+.+.+... ..+.-.+.+=.++.+++.|+.+.|...|. ..
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~ 439 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAAN 439 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhc
Confidence 34455666889999999999999999988877543 34667888889999999999999999997 33
Q ss_pred hcCCCHHHHHHHH-HHhhHHHHH
Q 013954 342 QSHPNALVSKRAR-QFMFSFQAM 363 (433)
Q Consensus 342 ~sHP~~eVrKQAk-rLlyiLEAp 363 (433)
...+..+++==|. .+..|++.+
T Consensus 440 ~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 440 RKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred cCCcchHHHHHHHHHHHHHhHhh
Confidence 4688888887765 566666644
No 271
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=27.25 E-value=1.2e+02 Score=36.22 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHh---hccc-ccchh------------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMN---KMVF-KSELH------------GLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~---~v~~-~S~LG------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
-|+-++.+=.||+.+.|++||||+=. .|.+ =++-- -..--||+--+|+.|..+.|++.|..-+-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 35568889999999999999999611 1100 00111 13345999999999999999999998654
Q ss_pred C
Q 013954 344 H 344 (433)
Q Consensus 344 H 344 (433)
|
T Consensus 941 ~ 941 (1416)
T KOG3617|consen 941 Y 941 (1416)
T ss_pred h
Confidence 3
No 272
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=27.00 E-value=86 Score=26.10 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
++++.-|+.++.+++.|.|..|+=+.++|+++.
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk~ 34 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAELA 34 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 356788999999999999999888877776654
No 273
>PLN03218 maturation of RBCL 1; Provisional
Probab=26.87 E-value=3.8e+02 Score=31.92 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 287 LMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 287 amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
+...|++.+|++.|+...+. .-...-.+--.|..+|-..|+.++|+.+|+.+..
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455666666666554432 1112223444566677778888888888888753
No 274
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=1.2e+02 Score=34.14 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH-Hh-cCCCHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQ-SHPNALVSK 351 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~-sHP~~eVrK 351 (433)
..-.|-.+-..++|.+||.+|++|+.+.+...+.|.-+. -||--+|..+-||+-|-+ |- .|=+.-++.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig----~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG----YIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH----HHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 445688999999999999999999999999999987764 556669999999999866 44 444444443
No 275
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=25.98 E-value=80 Score=23.13 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHhhcc
Q 013954 407 ALPYMIFLASPIFVILLIAVQRGS 430 (433)
Q Consensus 407 ~l~y~~~l~sPi~~v~~~A~~k~~ 430 (433)
+...+|++..|++ ++++|.|||+
T Consensus 10 ~~l~liv~aGP~V-I~lLa~r~Gn 32 (33)
T PF05969_consen 10 TSLALIVLAGPLV-IFLLAARKGN 32 (33)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCT--
T ss_pred HHHHHHHHcccHH-hhHHHhhcCC
Confidence 3556677778875 5678899987
No 276
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=25.59 E-value=50 Score=32.56 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=37.6
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 013954 214 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 272 (433)
Q Consensus 214 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~ 272 (433)
++.|-||||.-+.++. +....|+ +..++=+++.++.+++.+..-+ +.||+|-..
T Consensus 3 t~vGS~prp~~l~~a~---~~~~~g~-~~~~~l~~~~~~ai~~~v~~Q~-~~GldiitD 56 (332)
T cd03311 3 TTVGSFPRPKELREAR---AKFKKGE-ISAEELREAEDDAIADAVKDQE-EAGLDVVTD 56 (332)
T ss_pred ceecCCCCCHHHHHHH---HHHhcCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcccc
Confidence 5789999999998874 2233443 5566666777777777777664 788887543
No 277
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=25.24 E-value=5.1e+02 Score=23.36 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHH
Q 013954 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA 318 (433)
Q Consensus 272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaq 318 (433)
.++...+.+++.++.++.+|.+..|-.+||-|=-+--...-+|-.+-
T Consensus 4 ~~~~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H 50 (112)
T PF12487_consen 4 ALRPAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVH 50 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHH
Confidence 46777888999999999999999999999998554444445554443
No 278
>PRK11906 transcriptional regulator; Provisional
Probab=25.04 E-value=2.2e+02 Score=31.12 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH-HhcCCCHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK-LQSHPNAL 348 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk-L~sHP~~e 348 (433)
..-.|..+.-.|++..|...|+.|..+-|-.--. ....+..+=-.||.++|+..-++ |+-.|..-
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~----~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL----YYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH----HHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 4455777777888999999999998776544332 33334444448999999999999 77888653
No 279
>PRK10316 hypothetical protein; Provisional
Probab=24.89 E-value=2.9e+02 Score=27.49 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=41.3
Q ss_pred hhcCCCCCcchH----HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc
Q 013954 263 KSVGLNVDPKLK----SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS 311 (433)
Q Consensus 263 k~~Gl~Vdp~~k----~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S 311 (433)
+-.|++|+--.. .+.+........+++.|+|-+|-..|-+|.+-|.+-|
T Consensus 151 klAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~d~iv~ds 203 (209)
T PRK10316 151 RLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAEDGIIVDS 203 (209)
T ss_pred HHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhccceEEee
Confidence 457888887654 7788899999999999999999999999998886644
No 280
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=24.34 E-value=6.9e+02 Score=24.62 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-----------HHHHH
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-----------GLAAL 319 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-----------GeaqL 319 (433)
.......|.++-++.|+.++++.-...-+.+ .|.+..+..-+||..-.+..+..+. .+..+
T Consensus 144 ~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~--------g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~i 215 (343)
T PRK06585 144 ERDLARLIDDELAEAGLRITPDARALLVALL--------GGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSL 215 (343)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccH
Confidence 4566777888889999999998654433332 2666677777777655544332332 11222
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHh---cCCCHHHHHHHHHHhhHHHHHHhh
Q 013954 320 Q-WSICQDSLHRPKEARIMYEKLQ---SHPNALVSKRARQFMFSFQAMEMM 366 (433)
Q Consensus 320 w-LAiAydA~GR~~EAiaLYkkL~---sHP~~eVrKQAkrLlyiLEAp~ll 366 (433)
+ |+-| =..|+...|+.++++|. .||..=+.--+++++=.+++..++
T Consensus 216 f~l~da-i~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~ 265 (343)
T PRK06585 216 DDAADA-ALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKV 265 (343)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 13577788999999995 467655555555555555554443
No 281
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=24.27 E-value=33 Score=37.99 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=45.7
Q ss_pred hcCCcccccCCCCCCCCCCCCCCccCccccccccccccccccccccccCCCCCCCCcccccCCCCCCCCCceeEeecCcc
Q 013954 109 KNKDTVSFQNGTNSGEGRGNLPKEVGGKKEGLKISSIDFMGLNFADKKEGKGLPAGLVPVTDPFAEGDTPEVEIIVGDTS 188 (433)
Q Consensus 109 ~~~g~~~~~~~~~~g~~~~~~~~~~~~kk~~~~~~~~df~gl~f~~kk~~~g~p~gl~~~~~~~~~~~lpeve~i~~d~~ 188 (433)
|.+|--.-..|+..++-+.+..---=|.++.+.+-. -|+ +|+--|. +-.-|++..+ -+|-|--..+|.+
T Consensus 427 N~~g~lTinSQPavNg~~S~dpi~GWGp~~GyvyQK-ayl--EfF~~k~---~~~~l~~~~k-----~~~~vtY~a~n~~ 495 (590)
T KOG0564|consen 427 NRNGILTINSQPAVNGAPSSDPIFGWGPPGGYVYQK-AYL--EFFVSKE---LLDKLIEKLK-----ALPSVTYHAVNKK 495 (590)
T ss_pred ccCceEEecCCcccCCCcCCCCccccCCCCCeEeeh-hhh--HHhcCHH---HHHHHHHHHh-----cccceEEEEeccc
Confidence 344544445555554444332221133445554443 122 4433222 1223444444 4566777777764
Q ss_pred cccccccCCCCCCCcccccccccccccccccCCC
Q 013954 189 KFGESTVLRPGPKQEENLEFYKPKVSTWGVFPRP 222 (433)
Q Consensus 189 ~f~~~~~~~~~~~~~~~~d~YKPkVsTWGvFPRP 222 (433)
-+ ..-|.+...|.+-||||||.-
T Consensus 496 g~-----------~~tn~~~~~~nAVTWGVFPgr 518 (590)
T KOG0564|consen 496 GE-----------FVTNADESDPNAVTWGVFPGR 518 (590)
T ss_pred cc-----------cccCCCCCCCceeEeeccCCC
Confidence 42 123344567889999999953
No 282
>PF05235 CHAD: CHAD domain; InterPro: IPR007899 The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family IPR008172 from INTERPRO. It has conserved histidines that may chelate metals [].; PDB: 3E0S_B.
Probab=24.22 E-value=1.9e+02 Score=26.61 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccc--------cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC----CH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------SELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP----NA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~--------S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP----~~ 347 (433)
+.+.-..+.....|...+..++..+..-+.. ..+.--+.-.+.-. .......+..+..+| --
T Consensus 103 ~~~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~lH 176 (231)
T PF05235_consen 103 AREKLLEALRSARYRRLLLELEAWLAAPPWLTPAEEEASEPLRKFARRRLRRR------YRKLRKALRALDREPDDEELH 176 (231)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHT--S---TTSTTTTSBHHHHHHHHHHHH------HHHHHHHH--------THHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhCccccccccccccccHHHHHHHHHHHH------HHHHHHHHHHhhhcCChHHHH
Confidence 3344456677777777777777765332221 12222222222222 222223333322111 34
Q ss_pred HHHHHHHHHhhHHHHHH
Q 013954 348 LVSKRARQFMFSFQAME 364 (433)
Q Consensus 348 eVrKQAkrLlyiLEAp~ 364 (433)
++||++|+|+|.+|.-.
T Consensus 177 ~lR~~~K~lRY~~e~~~ 193 (231)
T PF05235_consen 177 RLRKAAKRLRYALEFFA 193 (231)
T ss_dssp HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999999653
No 283
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=23.77 E-value=4.4e+02 Score=33.12 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHh--------------CCchhhhhhHHHHHHhhcccccchhHHHHHH
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD--------------SGKLKEALPFYEKVMNKMVFKSELHGLAALQ 320 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~ame--------------rGkYreAV~~lEkA~~~v~~~S~LGGeaqLw 320 (433)
.|+|+=+-.=.+|++-=..++.|++.|+.+-++++ .+++.+|-++|+.-+.+.. +++ .+-+.
T Consensus 1494 eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~---~vW~~ 1569 (1710)
T KOG1070|consen 1494 EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR---KVWIM 1569 (1710)
T ss_pred HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh---hHHHH
Confidence 35565544446677766688888888888888887 5677888888888776653 221 34444
Q ss_pred HHHHHHhcCChHHHHHHHHH-Hh---cCCCHHHHHHHHHHhhHHH
Q 013954 321 WSICQDSLHRPKEARIMYEK-LQ---SHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 321 LAiAydA~GR~~EAiaLYkk-L~---sHP~~eVrKQAkrLlyiLE 361 (433)
|+..+=..+..++|+.+-++ |+ +|-|.++=.|-.||.|-.=
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 55555555555556665543 33 5778999999999998655
No 284
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=23.52 E-value=4.9e+02 Score=22.59 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred ccCCCcccC--CCCccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHH---------HHHhCCchhh
Q 013954 228 TFGGGRTIR--PGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGD---------SLMDSGKLKE 295 (433)
Q Consensus 228 ayGGGR~Ir--pGe~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk---------~amerGkYre 295 (433)
|.|-|.|+. +|..+..+|....-.+.+....+.-++-++..+.+... +.+--+|..|. .+++.|+|.+
T Consensus 28 TiG~G~t~~~~~g~~iT~~qa~~ll~~dl~~~~~~v~~~~~~~l~~~~~dALvs~ayN~G~~~~~~s~~~~~l~~g~~~~ 107 (133)
T cd00737 28 TIGYGHTGGVVPGMTITEEQADALLAKDLAKAERAVNRAVKVPLTQNQFDALVSFAFNVGAGAFRTSTLLRKLNAGDWAG 107 (133)
T ss_pred EeCcCcccCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhhhcCccccccchHHHHHHCCCHHH
Confidence 667777664 45666333333333333333333333344545544333 45555666653 4445555555
Q ss_pred hhh
Q 013954 296 ALP 298 (433)
Q Consensus 296 AV~ 298 (433)
|-.
T Consensus 108 a~~ 110 (133)
T cd00737 108 ACA 110 (133)
T ss_pred HHH
Confidence 533
No 285
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.35 E-value=1.1e+02 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.++.+...=..|.|.+|+.+|..+++.+
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334444444566666666666665543
No 286
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.03 E-value=2.5e+02 Score=29.90 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHH--HHHHHHHHhcCC--hHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA--LQWSICQDSLHR--PKEARIMYEK 340 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaq--LwLAiAydA~GR--~~EAiaLYkk 340 (433)
..........+.+|++++|..|...|+...+.... .+.....+ ..++.||.+=.+ +++|...-++
T Consensus 128 v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 128 VEGNTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33345566778999999999999999999887443 33444333 347888887654 6677666654
No 287
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=66 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 013954 316 LAALQWSICQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 316 eaqLwLAiAydA~GR~~EAiaLYkkL~sH 344 (433)
.+++.++.|||-+++.++|+.+|++=.+|
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 45677888999999999999999885433
No 288
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.42 E-value=1.1e+02 Score=23.03 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMN 305 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~ 305 (433)
.|+.++.+++-|++..|.+.|+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788999999999999999999885
No 289
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.95 E-value=3.5e+02 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 013954 331 PKEARIMYEKLQSHPNALVSKRARQFMF 358 (433)
Q Consensus 331 ~~EAiaLYkkL~sHP~~eVrKQAkrLly 358 (433)
..+++....++-+|+++.||.+|-+-|-
T Consensus 29 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 29 DPEAIPALIELLKDEDPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4466666666667777777777765444
No 290
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=21.93 E-value=1.3e+02 Score=26.98 Aligned_cols=69 Identities=17% Similarity=0.060 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc----CCCHHHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHh
Q 013954 310 KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS----HPNALVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAF 385 (433)
Q Consensus 310 ~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s----HP~~eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af 385 (433)
++=+|-++-=||.-|-..+ -+.||+.||+.|-. +|....+|-|.+ ++. + -.++.+.++.+=.|.+.|
T Consensus 30 ~CF~Gse~VDWLv~~~~~i-~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~-----~~~--~-~~~f~d~s~aly~F~~~~ 100 (109)
T cd04444 30 KTFLGSALVDWLISNSFAA-SRLEAVTLASMLMEENFLRPVGVRSMGAIR-----SGD--L-AEQFLDDSTALYTFAESY 100 (109)
T ss_pred ccccchHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCchhhHHHHhhhhhh-----ccc--c-ccccccCchHHHHhHHHH
Confidence 4567788888999988877 88999999999963 566666655544 111 0 122344555666666665
Q ss_pred hc
Q 013954 386 VE 387 (433)
Q Consensus 386 ~~ 387 (433)
-.
T Consensus 101 ~~ 102 (109)
T cd04444 101 KK 102 (109)
T ss_pred Hh
Confidence 43
No 291
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.67 E-value=2.1e+02 Score=27.43 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred hhhhHHHHHHhhcc--cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 295 EALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 295 eAV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+++|++|++... ...|+.-.+.+++|.-|-.+|+.++|..+++.+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45667777766543 2367888889999999999999999999999984
No 292
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.37 E-value=2.3e+02 Score=27.48 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhh----cccccchhHHHHHHHHHHH-HhcCChHHHHHHHHH
Q 013954 294 KEALPFYEKVMNK----MVFKSELHGLAALQWSICQ-DSLHRPKEARIMYEK 340 (433)
Q Consensus 294 reAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAy-dA~GR~~EAiaLYkk 340 (433)
..|...|++|++. +++...+.=-..|.+++.| +-+|..++|+.|.++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
No 293
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.21 E-value=86 Score=22.68 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHh-cCCCHHH
Q 013954 331 PKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~~eV 349 (433)
.+-|.++|+++. -||+..+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~ 22 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKN 22 (32)
T ss_pred HHHHHHHHHHHHHhCCCchH
Confidence 578999999996 7998764
No 294
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.12 E-value=1.2e+02 Score=34.72 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.|+.....|+.++|+.++.+.++++.+- .=||+.---+.+-+-.+|+.+||...++.=
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~----~eHgeslAmkGL~L~~lg~~~ea~~~vr~g 67 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF----PEHGESLAMKGLTLNCLGKKEEAYELVRLG 67 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC----CccchhHHhccchhhcccchHHHHHHHHHH
Confidence 4666777899999999999999998843 568888777777888999999999988763
No 295
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=21.07 E-value=1.4e+02 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhHHHHHHHHHhhcc
Q 013954 406 QALPYMIFLASPIFVILLIAVQRGS 430 (433)
Q Consensus 406 q~l~y~~~l~sPi~~v~~~A~~k~~ 430 (433)
-.+|-.++|....+++|+.|+++|.
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3467777888888888999998874
No 296
>PF13041 PPR_2: PPR repeat family
Probab=21.00 E-value=1.2e+02 Score=21.66 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=17.0
Q ss_pred HHHhcCChHHHHHHHHHHhcC
Q 013954 324 CQDSLHRPKEARIMYEKLQSH 344 (433)
Q Consensus 324 AydA~GR~~EAiaLYkkL~sH 344 (433)
+|-..|+.++|..+|+++..+
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHc
Confidence 344589999999999999743
No 297
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=20.90 E-value=1.4e+02 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
..|.+.++++..++..|++..|.-+|-+.++++
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999988765444
No 298
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.81 E-value=2.5e+02 Score=30.48 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCHHHHHHHHHHhhH
Q 013954 311 SELHGLAALQWSICQDSLHRPKEARIMYEKLQS-HPNALVSKRARQFMFS 359 (433)
Q Consensus 311 S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s-HP~~eVrKQAkrLlyi 359 (433)
+.+---+.--||||-..+||..||+.|.+.|.+ .|-..+-.--..|+-.
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa 320 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA 320 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 344444555699999999999999999999964 6654444444445443
No 299
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.62 E-value=9e+02 Score=24.55 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH-----------HHHHHHHHH
Q 013954 257 LLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-----------AALQWSICQ 325 (433)
Q Consensus 257 ~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe-----------aqLwLAiAy 325 (433)
.|..--++.|+.++++.-..+-. ...|..+.|+..++++...- ...+.-+ ..+.-.+-.
T Consensus 186 ~L~~~~~~~g~~i~~~al~~ia~--------~s~G~~R~al~~l~~~~~~~--~~~It~~~v~~~l~~~~~~~i~~l~~a 255 (363)
T PRK14961 186 FLKYILIKESIDTDEYALKLIAY--------HAHGSMRDALNLLEHAINLG--KGNINIKNVTDMLGLLNEKQSFLLTDA 255 (363)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH--------HcCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 33333334577777664332211 24699999999999986541 1111111 111111112
Q ss_pred HhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHHHhhhhcccC--CCC-cchHHHHHHhhcc
Q 013954 326 DSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMKVRSSS--DKN-TDYRNFFEAFVED 388 (433)
Q Consensus 326 dA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llKv~~~~--~~~-t~Yd~Yf~af~~~ 388 (433)
=..++..+|+.+++.|..+-. +...--..|+--+.-.=+.|++... ... +.+...+..++.+
T Consensus 256 i~~~~~~~~~~~~~~l~~~g~-~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (363)
T PRK14961 256 LLKKDSKKTMLLLNKISSIGI-EWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQN 320 (363)
T ss_pred HHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHc
Confidence 234678899999998874322 1222222333333322245555442 122 2255555555544
No 300
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=20.42 E-value=9.2e+02 Score=26.47 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhcCCC----------CCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHH
Q 013954 250 KEERTRQLLAAYKKSVGLN----------VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAAL 319 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~----------Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqL 319 (433)
|.+-+.+++-.|..+..-+ ..+.. ..+-..|=.++-+--.|+|.+|+++.++|++.-|.- -+.-+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~-~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~----~ely~ 232 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS-TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL----VELYM 232 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc----HHHHH
Confidence 3456677777887654221 11111 122345666777778999999999999999987553 46678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc
Q 013954 320 QWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkkL~s 343 (433)
+.|-+|--.|+.++|....+.-+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888777776654
No 301
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=20.27 E-value=75 Score=30.82 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=21.0
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013954 328 LHRPKEARIMYEKLQSHPNALVSKRARQF 356 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrL 356 (433)
+...+||++.|+|...+|+..++++=|+-
T Consensus 50 IRs~~dAl~s~eK~~~n~~kK~~~kDr~A 78 (187)
T PF01024_consen 50 IRSVDDALKSFEKYKSNLNKKINAKDRDA 78 (187)
T ss_dssp ---HHHHHHHHHHHHTHTTCSS-HHHHHH
T ss_pred cCCHHHHHHHHHHHHhchhhhhhhccHHH
Confidence 44578999999999999999888776653
No 302
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.21 E-value=5.8e+02 Score=27.85 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHH
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLK--SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 325 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k--~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAy 325 (433)
..+.+..++.|.+++-.+|-.+++=.+ +..+..|..=..+++.|.|-+|-+.++++-..+..=..+=-.+.=-+..|.
T Consensus 146 ~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~ 225 (569)
T PRK04778 146 KDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQ 225 (569)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888899988876433 778899999999999999999999888875555222222223333345555
Q ss_pred Hhc-CChHHHHHHHHHHhc----CCCHHHHHHHHHHh
Q 013954 326 DSL-HRPKEARIMYEKLQS----HPNALVSKRARQFM 357 (433)
Q Consensus 326 dA~-GR~~EAiaLYkkL~s----HP~~eVrKQAkrLl 357 (433)
.-+ ++.+|=..=|++|.. =++.+|-++=.+|-
T Consensus 226 ~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~ 262 (569)
T PRK04778 226 TELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLK 262 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHH
Confidence 545 778888888999862 24444544444433
No 303
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.00 E-value=70 Score=32.52 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=34.0
Q ss_pred ccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 013954 214 STWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDP 271 (433)
Q Consensus 214 sTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp 271 (433)
++.|-||||.-+-++. +..+.|+ +..++-+++-++.+++.++.= +..||+|-.
T Consensus 6 t~VGS~prp~~l~~~~---~~~~~g~-i~~~~l~~~~~~ai~~~V~~Q-~~aGldiit 58 (339)
T PRK09121 6 STAGSLPKPSWLAEPE---TLWSPWK-LQGEELIEGKQDALRLSLQEQ-EDAGIDIVS 58 (339)
T ss_pred ceecCCCCCHHHHHHH---HHHHcCC-CCHHHHHHHHHHHHHHHHHHH-HHhCCCcee
Confidence 6789999999888774 3344454 444445555666666666543 567777643
Done!