Query 013954
Match_columns 433
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 20:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.4 1.7E-06 5.9E-11 73.3 11.0 102 251-361 49-151 (151)
2 4gcn_A Protein STI-1; structur 98.4 2.2E-06 7.4E-11 68.7 9.7 102 250-356 20-125 (127)
3 2xev_A YBGF; tetratricopeptide 98.2 1.2E-05 4.3E-10 61.1 10.4 105 254-361 18-123 (129)
4 3ma5_A Tetratricopeptide repea 98.0 4E-05 1.4E-09 58.7 9.3 76 278-357 8-87 (100)
5 3qky_A Outer membrane assembly 98.0 3.1E-05 1.1E-09 66.9 9.3 81 280-361 151-242 (261)
6 2l6j_A TPR repeat-containing p 98.0 8.6E-05 2.9E-09 54.8 10.4 67 277-347 4-71 (111)
7 3k9i_A BH0479 protein; putativ 97.9 9E-05 3.1E-09 57.3 10.0 86 256-347 8-94 (117)
8 2v5f_A Prolyl 4-hydroxylase su 97.9 9.8E-05 3.4E-09 58.1 9.9 72 278-349 6-81 (104)
9 3rkv_A Putative peptidylprolyl 97.8 3.9E-05 1.3E-09 62.0 7.1 68 275-342 9-90 (162)
10 2xcb_A PCRH, regulatory protei 97.8 0.0001 3.5E-09 58.9 9.3 100 252-360 32-136 (142)
11 4gco_A Protein STI-1; structur 97.8 9.4E-05 3.2E-09 59.4 9.1 72 268-346 7-79 (126)
12 1elr_A TPR2A-domain of HOP; HO 97.8 0.0002 7E-09 53.0 10.2 82 278-359 39-124 (131)
13 3upv_A Heat shock protein STI1 97.8 0.0001 3.4E-09 56.8 8.7 66 277-346 4-70 (126)
14 2yhc_A BAMD, UPF0169 lipoprote 97.8 6.8E-05 2.3E-09 64.4 8.5 71 277-348 4-75 (225)
15 2vgx_A Chaperone SYCD; alterna 97.8 0.00014 4.6E-09 59.8 9.8 102 251-361 34-140 (148)
16 2xev_A YBGF; tetratricopeptide 97.8 0.00011 3.7E-09 55.8 8.4 68 279-347 4-72 (129)
17 2dba_A Smooth muscle cell asso 97.8 0.00057 2E-08 52.2 12.3 90 251-346 41-131 (148)
18 4gcn_A Protein STI-1; structur 97.7 0.00015 5.2E-09 57.9 9.1 64 275-342 6-69 (127)
19 4ga2_A E3 SUMO-protein ligase 97.7 0.0003 1E-08 57.5 10.6 85 253-346 12-97 (150)
20 2kck_A TPR repeat; tetratricop 97.6 0.00026 9E-09 51.2 8.5 66 279-346 42-109 (112)
21 2kc7_A BFR218_protein; tetratr 97.6 0.00013 4.4E-09 54.0 6.8 64 280-347 3-68 (99)
22 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00024 8.1E-09 57.5 8.8 82 252-342 25-106 (164)
23 1na3_A Designed protein CTPR2; 97.6 0.001 3.5E-08 47.4 11.0 67 277-347 9-76 (91)
24 3qky_A Outer membrane assembly 97.6 0.00029 9.9E-09 60.8 9.5 69 277-346 15-84 (261)
25 2kat_A Uncharacterized protein 97.6 0.00087 3E-08 51.1 11.2 76 258-342 5-80 (115)
26 1elw_A TPR1-domain of HOP; HOP 97.5 0.00038 1.3E-08 50.6 8.0 66 277-346 4-70 (118)
27 3gyz_A Chaperone protein IPGC; 97.5 0.00031 1.1E-08 59.4 8.3 67 276-346 35-102 (151)
28 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.0011 3.6E-08 56.9 11.6 65 281-346 151-216 (225)
29 2lni_A Stress-induced-phosphop 97.5 0.00045 1.5E-08 51.7 8.1 63 276-342 15-77 (133)
30 2xcb_A PCRH, regulatory protei 97.5 0.0006 2E-08 54.4 9.3 73 267-346 11-84 (142)
31 2dba_A Smooth muscle cell asso 97.5 0.001 3.5E-08 50.8 10.2 70 276-346 27-97 (148)
32 1elr_A TPR2A-domain of HOP; HO 97.5 0.00057 2E-08 50.6 8.5 63 276-342 3-65 (131)
33 3q49_B STIP1 homology and U bo 97.5 0.00058 2E-08 52.3 8.7 66 277-346 9-75 (137)
34 1a17_A Serine/threonine protei 97.5 0.00077 2.6E-08 52.5 9.5 57 281-341 51-107 (166)
35 2vgx_A Chaperone SYCD; alterna 97.5 0.00057 1.9E-08 56.1 9.0 72 268-346 15-87 (148)
36 3upv_A Heat shock protein STI1 97.4 0.001 3.5E-08 51.1 9.8 86 250-344 16-102 (126)
37 1hxi_A PEX5, peroxisome target 97.4 0.00024 8.4E-09 56.4 6.3 88 250-346 29-117 (121)
38 4gco_A Protein STI-1; structur 97.4 0.0012 4.1E-08 52.9 10.3 89 250-347 25-114 (126)
39 2lni_A Stress-induced-phosphop 97.4 0.0031 1.1E-07 47.0 11.7 87 252-347 30-117 (133)
40 2vyi_A SGTA protein; chaperone 97.4 0.0014 4.9E-08 48.2 9.6 68 275-346 10-78 (131)
41 2hr2_A Hypothetical protein; a 97.4 0.00044 1.5E-08 61.6 7.9 69 274-342 8-84 (159)
42 2kck_A TPR repeat; tetratricop 97.4 0.0014 4.8E-08 47.3 9.1 63 280-346 9-72 (112)
43 2fbn_A 70 kDa peptidylprolyl i 97.3 0.00088 3E-08 55.8 9.0 58 280-341 91-148 (198)
44 3urz_A Uncharacterized protein 97.3 0.00054 1.8E-08 58.4 7.8 67 277-347 4-87 (208)
45 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0032 1.1E-07 50.8 11.9 70 273-346 7-77 (164)
46 1hxi_A PEX5, peroxisome target 97.3 0.00076 2.6E-08 53.5 8.0 65 278-346 18-83 (121)
47 4i17_A Hypothetical protein; T 97.3 0.0019 6.3E-08 54.3 10.5 64 279-346 9-74 (228)
48 3qwp_A SET and MYND domain-con 97.3 0.00059 2E-08 67.5 8.3 125 214-341 194-355 (429)
49 3vtx_A MAMA; tetratricopeptide 97.2 0.0016 5.6E-08 52.6 9.2 64 280-347 8-72 (184)
50 1elw_A TPR1-domain of HOP; HOP 97.2 0.0036 1.2E-07 45.4 10.0 66 278-347 39-105 (118)
51 2pl2_A Hypothetical conserved 97.2 0.002 7E-08 55.2 9.9 87 252-348 98-185 (217)
52 2vyi_A SGTA protein; chaperone 97.2 0.0055 1.9E-07 45.0 10.9 66 278-347 47-113 (131)
53 1a17_A Serine/threonine protei 97.2 0.0083 2.8E-07 46.6 12.2 71 272-346 8-79 (166)
54 3ro2_A PINS homolog, G-protein 97.2 0.0014 4.7E-08 55.4 8.2 64 279-342 45-110 (338)
55 3vtx_A MAMA; tetratricopeptide 97.1 0.0017 5.9E-08 52.5 8.5 64 279-346 109-173 (184)
56 3q49_B STIP1 homology and U bo 97.1 0.0022 7.6E-08 49.0 8.5 88 250-346 21-109 (137)
57 3rkv_A Putative peptidylprolyl 97.1 0.0032 1.1E-07 50.7 9.8 67 277-347 63-130 (162)
58 3ieg_A DNAJ homolog subfamily 97.1 0.0033 1.1E-07 54.2 10.3 68 279-346 236-304 (359)
59 1na0_A Designed protein CTPR3; 97.1 0.0073 2.5E-07 44.0 10.7 65 279-347 45-110 (125)
60 4a1s_A PINS, partner of inscut 97.1 0.0015 5.2E-08 58.8 8.4 66 278-343 87-154 (411)
61 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0075 2.6E-07 50.1 12.1 57 290-346 51-120 (198)
62 3urz_A Uncharacterized protein 97.1 0.0047 1.6E-07 52.6 11.0 65 281-349 58-123 (208)
63 3ro3_A PINS homolog, G-protein 97.0 0.0031 1E-07 47.7 8.3 68 275-342 7-76 (164)
64 4abn_A Tetratricopeptide repea 97.0 0.0086 2.9E-07 58.2 13.5 78 278-359 103-182 (474)
65 3uq3_A Heat shock protein STI1 97.0 0.0024 8.1E-08 52.8 8.2 63 275-342 3-65 (258)
66 1na0_A Designed protein CTPR3; 97.0 0.0045 1.5E-07 45.1 8.9 66 277-346 9-75 (125)
67 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.0058 2E-07 50.2 10.4 90 254-348 53-155 (213)
68 3uq3_A Heat shock protein STI1 97.0 0.0075 2.6E-07 49.8 11.0 98 253-356 20-121 (258)
69 3sf4_A G-protein-signaling mod 97.0 0.0022 7.6E-08 56.6 8.2 89 252-342 23-114 (406)
70 2gw1_A Mitochondrial precursor 96.9 0.0028 9.5E-08 58.1 8.9 81 252-342 20-100 (514)
71 1ihg_A Cyclophilin 40; ppiase 96.9 0.0023 7.9E-08 61.1 8.4 64 278-341 224-299 (370)
72 3qou_A Protein YBBN; thioredox 96.9 0.0047 1.6E-07 55.6 9.8 71 276-350 116-187 (287)
73 4f3v_A ESX-1 secretion system 96.9 0.0053 1.8E-07 58.9 10.7 95 248-346 145-240 (282)
74 2c2l_A CHIP, carboxy terminus 96.9 0.0038 1.3E-07 56.2 9.0 87 250-345 16-103 (281)
75 2pl2_A Hypothetical conserved 96.9 0.00071 2.4E-08 58.0 4.0 85 252-346 132-216 (217)
76 3u4t_A TPR repeat-containing p 96.9 0.003 1E-07 53.3 7.8 61 280-341 40-100 (272)
77 3edt_B KLC 2, kinesin light ch 96.9 0.009 3.1E-07 49.6 10.5 69 275-343 83-155 (283)
78 4i17_A Hypothetical protein; T 96.8 0.013 4.5E-07 49.1 11.6 88 254-346 58-149 (228)
79 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.013 4.4E-07 49.2 11.4 62 277-342 43-104 (275)
80 3ieg_A DNAJ homolog subfamily 96.8 0.0046 1.6E-07 53.3 8.6 86 251-345 16-102 (359)
81 2y4t_A DNAJ homolog subfamily 96.8 0.0036 1.2E-07 56.9 8.4 65 281-345 261-326 (450)
82 3edt_B KLC 2, kinesin light ch 96.8 0.0097 3.3E-07 49.4 10.2 86 254-343 24-113 (283)
83 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.0035 1.2E-07 61.0 8.6 63 279-345 319-382 (457)
84 1p5q_A FKBP52, FK506-binding p 96.8 0.0036 1.2E-07 58.1 8.3 127 251-388 160-298 (336)
85 3ro3_A PINS homolog, G-protein 96.8 0.0058 2E-07 46.1 8.0 69 274-342 46-116 (164)
86 3nf1_A KLC 1, kinesin light ch 96.8 0.006 2E-07 51.8 8.9 71 272-342 22-96 (311)
87 2qfc_A PLCR protein; TPR, HTH, 96.8 0.0089 3E-07 53.1 10.4 67 276-342 154-223 (293)
88 3fp2_A TPR repeat-containing p 96.8 0.0037 1.3E-07 58.0 8.3 68 275-346 23-91 (537)
89 2r5s_A Uncharacterized protein 96.8 0.0021 7.1E-08 52.9 5.9 68 278-349 7-75 (176)
90 2hr2_A Hypothetical protein; a 96.7 0.0047 1.6E-07 54.9 8.4 93 248-342 21-129 (159)
91 2ifu_A Gamma-SNAP; membrane fu 96.7 0.0055 1.9E-07 55.3 9.0 87 275-361 153-241 (307)
92 1ihg_A Cyclophilin 40; ppiase 96.7 0.0085 2.9E-07 57.2 10.7 80 277-360 273-354 (370)
93 1p5q_A FKBP52, FK506-binding p 96.7 0.012 4.1E-07 54.6 11.4 55 291-345 161-227 (336)
94 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.0079 2.7E-07 49.4 8.9 84 251-346 19-103 (213)
95 3u4t_A TPR repeat-containing p 96.7 0.0035 1.2E-07 52.9 7.0 63 279-345 5-67 (272)
96 2if4_A ATFKBP42; FKBP-like, al 96.7 0.0029 1E-07 58.9 7.0 72 275-346 177-262 (338)
97 3as5_A MAMA; tetratricopeptide 96.7 0.0084 2.9E-07 46.6 8.5 62 280-345 79-141 (186)
98 2vq2_A PILW, putative fimbrial 96.6 0.01 3.5E-07 47.9 9.1 63 277-343 42-105 (225)
99 1qqe_A Vesicular transport pro 96.6 0.0091 3.1E-07 53.4 9.4 77 277-353 158-238 (292)
100 2fo7_A Synthetic consensus TPR 96.6 0.013 4.6E-07 42.7 8.7 63 280-346 38-101 (136)
101 2vq2_A PILW, putative fimbrial 96.6 0.01 3.4E-07 48.0 8.7 58 280-341 116-173 (225)
102 3as5_A MAMA; tetratricopeptide 96.6 0.018 6.2E-07 44.6 9.8 87 251-346 21-108 (186)
103 2ho1_A Type 4 fimbrial biogene 96.6 0.03 1E-06 46.8 11.8 86 254-346 121-207 (252)
104 3nf1_A KLC 1, kinesin light ch 96.6 0.018 6E-07 48.9 10.3 69 275-343 151-223 (311)
105 2ho1_A Type 4 fimbrial biogene 96.5 0.013 4.4E-07 49.0 9.3 60 280-343 74-133 (252)
106 4eqf_A PEX5-related protein; a 96.5 0.012 4.2E-07 52.4 9.2 58 280-341 68-125 (365)
107 4ga2_A E3 SUMO-protein ligase 96.4 0.017 5.8E-07 47.1 9.2 86 253-347 46-133 (150)
108 1xnf_A Lipoprotein NLPI; TPR, 96.4 0.023 7.9E-07 47.6 10.1 66 279-348 79-145 (275)
109 3gw4_A Uncharacterized protein 96.4 0.013 4.4E-07 47.3 8.1 68 275-342 64-134 (203)
110 2fo7_A Synthetic consensus TPR 96.4 0.015 5.2E-07 42.4 7.8 63 280-346 4-67 (136)
111 2l6j_A TPR repeat-containing p 96.4 0.00076 2.6E-08 49.6 0.7 85 253-342 19-105 (111)
112 2e2e_A Formate-dependent nitri 96.4 0.029 9.9E-07 45.3 10.1 64 280-347 81-148 (177)
113 2e2e_A Formate-dependent nitri 96.3 0.015 5.1E-07 47.0 8.3 66 278-347 45-114 (177)
114 2q7f_A YRRB protein; TPR, prot 96.3 0.013 4.5E-07 48.2 8.1 67 279-349 161-228 (243)
115 3gw4_A Uncharacterized protein 96.3 0.012 4.2E-07 47.4 7.8 68 275-342 105-174 (203)
116 4gyw_A UDP-N-acetylglucosamine 96.3 0.0098 3.3E-07 62.8 9.1 86 252-346 57-143 (723)
117 2vsy_A XCC0866; transferase, g 96.3 0.04 1.4E-06 53.7 12.8 88 250-346 35-123 (568)
118 1zu2_A Mitochondrial import re 96.3 0.013 4.4E-07 52.1 8.6 101 247-356 11-133 (158)
119 1fch_A Peroxisomal targeting s 96.3 0.039 1.3E-06 48.5 11.4 90 250-346 193-283 (368)
120 4eqf_A PEX5-related protein; a 96.3 0.017 5.8E-07 51.5 9.1 90 248-346 75-165 (365)
121 4gyw_A UDP-N-acetylglucosamine 96.3 0.011 3.9E-07 62.3 9.1 88 251-347 22-110 (723)
122 2y4t_A DNAJ homolog subfamily 96.2 0.032 1.1E-06 50.7 10.7 87 253-348 41-128 (450)
123 1kt0_A FKBP51, 51 kDa FK506-bi 96.2 0.022 7.4E-07 55.4 10.1 56 291-346 282-349 (457)
124 3u3w_A Transcriptional activat 96.2 0.037 1.3E-06 49.1 10.7 91 252-342 89-182 (293)
125 2r5s_A Uncharacterized protein 96.2 0.013 4.3E-07 48.2 7.1 59 280-340 111-169 (176)
126 2q7f_A YRRB protein; TPR, prot 96.2 0.024 8.1E-07 46.7 8.7 64 279-346 93-157 (243)
127 4abn_A Tetratricopeptide repea 96.2 0.048 1.6E-06 53.0 12.2 103 250-358 191-303 (474)
128 3cv0_A Peroxisome targeting si 96.1 0.016 5.4E-07 49.6 7.8 89 249-346 32-121 (327)
129 3ffl_A Anaphase-promoting comp 96.1 0.016 5.5E-07 52.7 8.2 77 274-350 60-158 (167)
130 3mkr_A Coatomer subunit epsilo 96.1 0.017 5.7E-07 52.6 8.3 58 285-346 174-232 (291)
131 3k9i_A BH0479 protein; putativ 96.1 0.0078 2.7E-07 46.3 5.2 58 289-347 2-60 (117)
132 3u3w_A Transcriptional activat 96.1 0.028 9.7E-07 49.8 9.4 68 275-342 153-223 (293)
133 1qqe_A Vesicular transport pro 96.0 0.02 7E-07 51.2 8.4 68 275-342 75-145 (292)
134 3hym_B Cell division cycle pro 96.0 0.037 1.3E-06 47.4 9.6 87 255-346 176-268 (330)
135 3qwp_A SET and MYND domain-con 96.0 0.028 9.7E-07 55.5 10.2 68 274-341 326-397 (429)
136 1wao_1 Serine/threonine protei 96.0 0.017 5.9E-07 56.8 8.5 85 254-347 22-107 (477)
137 1fch_A Peroxisomal targeting s 96.0 0.019 6.4E-07 50.6 7.8 89 249-346 75-164 (368)
138 3qou_A Protein YBBN; thioredox 96.0 0.015 5.3E-07 52.3 7.4 90 249-347 162-252 (287)
139 2c2l_A CHIP, carboxy terminus 96.0 0.018 6.1E-07 51.9 7.7 67 277-347 4-71 (281)
140 4a1s_A PINS, partner of inscut 95.9 0.083 2.9E-06 47.5 11.6 68 275-342 221-290 (411)
141 3ro2_A PINS homolog, G-protein 95.9 0.02 6.7E-07 48.4 7.0 67 275-341 221-289 (338)
142 3cv0_A Peroxisome targeting si 95.9 0.039 1.3E-06 47.1 8.9 66 277-346 21-87 (327)
143 3qww_A SET and MYND domain-con 95.8 0.05 1.7E-06 54.2 11.0 67 275-341 338-408 (433)
144 3hym_B Cell division cycle pro 95.8 0.019 6.6E-07 49.1 7.0 64 279-346 238-302 (330)
145 2qfc_A PLCR protein; TPR, HTH, 95.8 0.024 8E-07 50.3 7.5 64 278-341 197-263 (293)
146 2gw1_A Mitochondrial precursor 95.8 0.072 2.5E-06 48.8 10.8 79 279-361 414-496 (514)
147 1ouv_A Conserved hypothetical 95.7 0.071 2.4E-06 45.9 10.2 64 279-348 40-111 (273)
148 3ulq_A Response regulator aspa 95.7 0.051 1.7E-06 49.5 9.7 90 253-342 118-211 (383)
149 1w3b_A UDP-N-acetylglucosamine 95.7 0.048 1.6E-06 49.1 9.4 55 283-341 277-331 (388)
150 3fp2_A TPR repeat-containing p 95.7 0.038 1.3E-06 51.3 8.9 78 281-362 422-510 (537)
151 1wao_1 Serine/threonine protei 95.7 0.0067 2.3E-07 59.7 3.9 68 276-347 5-73 (477)
152 3n71_A Histone lysine methyltr 95.6 0.033 1.1E-06 56.4 8.9 66 276-341 308-377 (490)
153 3mkr_A Coatomer subunit epsilo 95.6 0.062 2.1E-06 48.8 9.9 60 280-348 104-164 (291)
154 2if4_A ATFKBP42; FKBP-like, al 95.6 0.025 8.5E-07 52.7 7.3 64 279-346 232-296 (338)
155 4b4t_Q 26S proteasome regulato 95.6 0.036 1.2E-06 50.4 8.2 63 280-342 7-82 (434)
156 3sf4_A G-protein-signaling mod 95.6 0.03 1E-06 49.4 7.4 67 276-342 266-334 (406)
157 2ifu_A Gamma-SNAP; membrane fu 95.6 0.033 1.1E-06 50.1 7.8 65 277-342 116-182 (307)
158 3q15_A PSP28, response regulat 95.5 0.034 1.2E-06 50.9 7.9 68 275-342 180-249 (378)
159 3n71_A Histone lysine methyltr 95.5 0.24 8.1E-06 50.2 14.7 116 275-396 349-476 (490)
160 3ulq_A Response regulator aspa 95.5 0.034 1.2E-06 50.7 7.7 69 275-343 182-252 (383)
161 2vsy_A XCC0866; transferase, g 95.5 0.033 1.1E-06 54.3 8.1 84 255-347 6-90 (568)
162 1w3b_A UDP-N-acetylglucosamine 95.4 0.046 1.6E-06 49.3 8.2 63 280-346 308-371 (388)
163 3q15_A PSP28, response regulat 95.3 0.093 3.2E-06 48.0 9.9 90 253-342 116-209 (378)
164 3qww_A SET and MYND domain-con 95.3 0.052 1.8E-06 54.1 8.7 63 279-341 300-366 (433)
165 2pzi_A Probable serine/threoni 95.0 0.064 2.2E-06 54.9 8.6 64 279-346 435-499 (681)
166 1ouv_A Conserved hypothetical 94.9 0.18 6.3E-06 43.3 10.2 64 279-348 76-147 (273)
167 2xpi_A Anaphase-promoting comp 94.9 0.11 3.7E-06 49.3 9.5 64 280-347 519-583 (597)
168 4g1t_A Interferon-induced prot 94.8 0.053 1.8E-06 49.9 6.8 61 282-342 56-121 (472)
169 1hz4_A MALT regulatory protein 94.7 0.14 4.7E-06 46.0 9.0 67 276-342 52-120 (373)
170 2h6f_A Protein farnesyltransfe 94.6 0.055 1.9E-06 52.3 6.7 85 254-347 148-233 (382)
171 1hz4_A MALT regulatory protein 94.6 0.11 3.6E-06 46.8 8.0 68 275-342 91-162 (373)
172 3rjv_A Putative SEL1 repeat pr 94.5 0.15 5.3E-06 43.6 8.6 64 278-348 19-86 (212)
173 2pzi_A Probable serine/threoni 94.4 0.068 2.3E-06 54.7 7.3 82 249-340 444-525 (681)
174 4f3v_A ESX-1 secretion system 93.9 0.07 2.4E-06 51.2 5.8 65 279-345 137-201 (282)
175 2ond_A Cleavage stimulation fa 93.8 0.35 1.2E-05 43.2 9.8 82 255-343 81-162 (308)
176 2h6f_A Protein farnesyltransfe 93.6 0.2 6.9E-06 48.3 8.3 65 279-347 133-199 (382)
177 2ond_A Cleavage stimulation fa 93.4 1.2 4E-05 39.9 12.4 81 252-343 148-231 (308)
178 4b4t_Q 26S proteasome regulato 93.2 0.23 8E-06 45.1 7.6 98 246-343 12-163 (434)
179 2xpi_A Anaphase-promoting comp 93.2 0.25 8.5E-06 46.8 8.1 58 284-341 482-542 (597)
180 1klx_A Cysteine rich protein B 93.1 0.48 1.7E-05 38.4 8.7 64 278-347 58-129 (138)
181 2ff4_A Probable regulatory pro 92.8 0.78 2.7E-05 44.5 11.2 72 282-357 176-255 (388)
182 1na3_A Designed protein CTPR2; 92.2 0.46 1.6E-05 33.4 6.6 68 253-329 24-91 (91)
183 2kat_A Uncharacterized protein 92.2 0.27 9.4E-06 37.1 5.7 50 294-347 2-52 (115)
184 3rjv_A Putative SEL1 repeat pr 92.1 2 7E-05 36.6 11.8 68 277-349 125-202 (212)
185 3bee_A Putative YFRE protein; 92.1 0.71 2.4E-05 36.3 8.2 64 279-346 8-75 (93)
186 2kc7_A BFR218_protein; tetratr 92.0 0.16 5.6E-06 37.0 4.1 77 250-342 12-88 (99)
187 4g1t_A Interferon-induced prot 91.8 0.55 1.9E-05 43.2 8.3 71 285-359 221-292 (472)
188 3bee_A Putative YFRE protein; 90.5 0.87 3E-05 35.8 7.2 30 280-309 46-75 (93)
189 1klx_A Cysteine rich protein B 89.8 2 6.7E-05 34.8 9.0 60 283-348 31-94 (138)
190 2ooe_A Cleavage stimulation fa 89.5 2.3 7.7E-05 40.9 10.6 58 288-349 23-81 (530)
191 2ooe_A Cleavage stimulation fa 88.8 0.93 3.2E-05 43.6 7.4 51 290-343 292-349 (530)
192 2xm6_A Protein corresponding t 87.1 3.6 0.00012 39.1 10.2 48 290-343 200-251 (490)
193 2xm6_A Protein corresponding t 87.0 2.1 7.3E-05 40.7 8.6 63 280-348 78-148 (490)
194 3mv2_B Coatomer subunit epsilo 86.1 3.3 0.00011 40.2 9.5 65 279-345 102-167 (310)
195 1b89_A Protein (clathrin heavy 84.7 1.3 4.4E-05 45.4 6.1 64 279-342 150-234 (449)
196 1pc2_A Mitochondria fission pr 84.4 5.7 0.00019 35.2 9.4 79 278-361 33-115 (152)
197 3ly7_A Transcriptional activat 83.9 2.6 8.9E-05 42.2 7.8 68 286-358 286-354 (372)
198 3ma5_A Tetratricopeptide repea 83.7 1.9 6.4E-05 32.5 5.3 58 253-315 22-79 (100)
199 2ff4_A Probable regulatory pro 83.6 3.8 0.00013 39.7 8.7 73 275-348 113-205 (388)
200 2ijq_A Hypothetical protein; s 82.1 4.1 0.00014 36.7 7.6 67 275-341 30-101 (161)
201 1b89_A Protein (clathrin heavy 81.8 1.4 4.7E-05 45.2 5.1 52 279-342 124-175 (449)
202 2cwy_A Hypothetical protein TT 80.7 2.3 8E-05 34.8 5.1 60 280-341 4-65 (94)
203 3e4b_A ALGK; tetratricopeptide 77.5 4.4 0.00015 39.0 6.8 56 280-342 251-314 (452)
204 1xi4_A Clathrin heavy chain; a 77.1 4.8 0.00016 47.4 8.0 82 250-341 1117-1221(1630)
205 2vkj_A TM1634; membrane protei 76.3 5.9 0.0002 33.8 6.3 49 258-306 31-82 (106)
206 3ffl_A Anaphase-promoting comp 75.5 7.2 0.00025 35.4 7.2 61 280-340 23-88 (167)
207 3dss_A Geranylgeranyl transfer 74.9 8.7 0.0003 37.3 8.1 85 242-346 10-106 (331)
208 1qsa_A Protein (soluble lytic 74.8 5.2 0.00018 42.0 7.0 74 281-369 290-363 (618)
209 3e4b_A ALGK; tetratricopeptide 73.9 18 0.00061 34.8 9.9 61 281-348 217-284 (452)
210 3mv2_B Coatomer subunit epsilo 70.6 10 0.00035 36.8 7.4 65 276-345 175-242 (310)
211 2p58_C Putative type III secre 70.4 9.4 0.00032 33.2 6.3 73 275-357 39-111 (116)
212 1zu2_A Mitochondrial import re 69.7 2.8 9.5E-05 37.2 3.0 53 291-347 16-79 (158)
213 2uwj_G Type III export protein 69.2 9.2 0.00032 33.2 6.0 73 275-357 38-110 (115)
214 1xi4_A Clathrin heavy chain; a 67.8 7.4 0.00025 45.9 6.7 51 279-341 1197-1247(1630)
215 4e6h_A MRNA 3'-END-processing 62.8 13 0.00046 39.1 7.0 56 284-343 350-406 (679)
216 3iqc_A FLIS, flagellar protein 61.8 21 0.00073 30.6 6.9 58 273-330 32-94 (131)
217 2qx5_A Nucleoporin NIC96; mRNA 60.9 27 0.00091 37.4 8.9 55 255-310 512-570 (661)
218 3dra_A Protein farnesyltransfe 59.6 28 0.00096 33.0 8.0 71 275-349 30-104 (306)
219 3mkq_A Coatomer beta'-subunit; 57.8 9.7 0.00033 37.7 4.6 61 282-343 686-764 (814)
220 1orj_A Flagellar protein FLIS; 57.6 13 0.00046 32.0 5.0 56 274-329 26-90 (130)
221 3ax2_A Mitochondrial import re 54.1 15 0.00051 29.3 4.3 40 275-314 15-54 (73)
222 3dra_A Protein farnesyltransfe 53.5 1.5E+02 0.0051 28.0 11.9 60 283-345 73-141 (306)
223 2v5f_A Prolyl 4-hydroxylase su 52.2 16 0.00054 28.1 4.1 34 280-313 49-82 (104)
224 1nzn_A CGI-135 protein, fissio 51.6 57 0.002 28.1 7.9 78 279-361 37-118 (126)
225 1dce_A Protein (RAB geranylger 50.4 7.7 0.00026 39.5 2.7 61 282-346 33-105 (567)
226 1om2_A Protein (mitochondrial 48.7 17 0.00058 30.4 4.0 40 275-314 18-57 (95)
227 1dce_A Protein (RAB geranylger 48.1 1E+02 0.0036 31.2 10.5 59 284-346 70-141 (567)
228 1vh6_A Flagellar protein FLIS; 48.1 27 0.00092 30.6 5.4 72 257-328 8-87 (145)
229 1wjt_A Transcription elongatio 47.7 42 0.0015 27.9 6.3 25 339-363 60-85 (103)
230 3o48_A Mitochondria fission 1 45.4 56 0.0019 28.7 7.0 91 259-361 28-122 (134)
231 2hsb_A Hypothetical UPF0332 pr 43.9 20 0.0007 28.9 3.8 35 273-307 8-42 (126)
232 3l9t_A Putative uncharacterize 43.8 50 0.0017 31.5 6.9 71 283-357 25-95 (240)
233 3txn_A 26S proteasome regulato 40.5 48 0.0016 33.1 6.6 61 282-342 104-166 (394)
234 4a5x_A MITD1, MIT domain-conta 39.8 32 0.0011 27.5 4.2 32 276-307 15-46 (86)
235 2v6y_A AAA family ATPase, P60 37.1 27 0.00091 27.7 3.4 21 320-340 16-36 (83)
236 2cfu_A SDSA1; SDS-hydrolase, l 36.9 23 0.00079 37.2 3.8 52 278-333 450-501 (658)
237 1y8m_A FIS1; mitochondria, unk 36.8 1.3E+02 0.0044 26.7 8.0 76 280-361 42-121 (144)
238 2w2u_A Hypothetical P60 katani 36.7 27 0.00093 27.8 3.4 21 320-340 24-44 (83)
239 2v6x_A Vacuolar protein sortin 36.6 52 0.0018 25.6 4.9 33 275-307 11-43 (85)
240 2w2u_A Hypothetical P60 katani 35.2 43 0.0015 26.7 4.3 34 274-307 16-49 (83)
241 3zwl_E Eukaryotic translation 34.7 37 0.0013 25.5 3.6 28 245-272 22-49 (50)
242 4b4t_R RPN7, 26S proteasome re 34.7 72 0.0025 31.2 6.7 91 252-350 111-207 (429)
243 3arc_Y Protein YCF12; PSII, me 34.3 48 0.0016 22.7 3.7 22 408-430 7-28 (29)
244 2v6y_A AAA family ATPase, P60 34.2 49 0.0017 26.2 4.4 33 275-307 9-41 (83)
245 2rpa_A Katanin P60 ATPase-cont 31.9 41 0.0014 27.1 3.6 33 276-308 11-43 (78)
246 2cpt_A SKD1 protein, vacuolar 31.4 41 0.0014 28.4 3.8 32 276-307 17-48 (117)
247 1rh1_A Colicin B; FEPA, cytoto 31.3 2.7E+02 0.0092 29.4 10.4 58 328-385 363-424 (511)
248 3shg_B VBHA; ampylation, adeny 31.2 71 0.0024 25.1 4.7 36 243-279 3-38 (61)
249 3u64_A Protein TP_0956; tetrat 31.1 2.6E+02 0.009 27.4 9.9 71 284-357 206-292 (301)
250 3q7a_A Farnesyltransferase alp 31.0 1.6E+02 0.0056 28.7 8.5 57 284-346 95-157 (349)
251 1wfd_A Hypothetical protein 15 30.8 76 0.0026 25.5 5.1 33 275-307 13-45 (93)
252 3few_X Colicin S4; cell lysis, 30.5 49 0.0017 34.6 4.8 105 258-367 264-385 (505)
253 3lpz_A GET4 (YOR164C homolog); 30.1 1E+02 0.0035 30.5 6.9 55 275-329 32-89 (336)
254 1wy6_A Hypothetical protein ST 29.7 73 0.0025 29.3 5.3 59 286-348 100-158 (172)
255 4h7y_A Dual specificity protei 29.5 40 0.0014 30.7 3.6 79 268-349 7-93 (161)
256 3efz_A 14-3-3 protein; 14-3-3, 29.3 2.3E+02 0.008 27.4 9.1 85 253-341 101-223 (268)
257 4b4t_P 26S proteasome regulato 29.2 3.2E+02 0.011 26.9 10.3 63 280-342 140-204 (445)
258 2bn5_A PSI; nuclear protein, s 28.5 64 0.0022 22.7 3.6 27 319-345 6-32 (33)
259 1wol_A ST0689, 122AA long cons 27.8 64 0.0022 26.1 4.2 34 274-307 8-41 (122)
260 1o3u_A Conserved hypothetical 27.6 62 0.0021 27.0 4.2 33 275-307 14-46 (135)
261 2wpv_A GET4, UPF0363 protein Y 27.1 1.3E+02 0.0045 29.2 7.0 75 250-331 12-89 (312)
262 4ffb_C Protein STU2; tubulin f 26.7 3.4E+02 0.012 24.1 9.8 48 312-359 154-209 (278)
263 3mkq_B Coatomer subunit alpha; 26.5 44 0.0015 30.3 3.3 63 282-345 39-119 (177)
264 1te4_A Conserved protein MTH18 26.1 2.4E+02 0.0081 22.1 7.3 57 294-357 72-128 (131)
265 3mkq_A Coatomer beta'-subunit; 26.0 1.5E+02 0.0051 29.3 7.2 46 284-341 730-775 (814)
266 4fm3_A Uncharacterized hypothe 25.8 1.9E+02 0.0066 24.3 6.8 51 253-304 11-61 (98)
267 2crb_A Nuclear receptor bindin 25.4 47 0.0016 28.2 3.0 27 282-308 20-46 (97)
268 1ufb_A TT1696 protein; structu 24.9 65 0.0022 26.0 3.8 34 274-307 8-41 (127)
269 3rpd_A Methionine synthase (B1 24.5 1.2E+02 0.004 29.8 6.2 56 212-272 19-74 (357)
270 4a5x_A MITD1, MIT domain-conta 24.2 78 0.0027 25.3 4.0 35 318-352 19-61 (86)
271 3u64_A Protein TP_0956; tetrat 23.0 1E+02 0.0035 30.3 5.3 54 292-347 178-237 (301)
272 1col_A Colicin A; antibacteria 23.0 36 0.0012 32.1 2.1 43 328-370 53-96 (204)
273 3mkr_B Coatomer subunit alpha; 22.8 1E+02 0.0035 30.5 5.4 42 269-310 94-135 (320)
274 3geb_A EYES absent homolog 2; 22.6 54 0.0018 32.2 3.3 123 246-406 115-248 (274)
275 4g26_A Pentatricopeptide repea 22.4 2.1E+02 0.007 28.6 7.6 60 288-350 151-213 (501)
276 3dss_A Geranylgeranyl transfer 22.0 5.3E+02 0.018 24.7 10.5 49 293-345 90-141 (331)
277 2yhe_A SEC-alkyl sulfatase; hy 27.6 19 0.00065 38.3 0.0 54 277-334 461-514 (668)
278 1ya0_A SMG-7 transcript varian 21.2 3.6E+02 0.012 27.6 9.2 70 280-353 155-226 (497)
279 1xju_A Lysozyme; secreted inac 21.1 4E+02 0.014 23.2 8.4 60 228-287 29-92 (163)
280 2v6x_A Vacuolar protein sortin 20.7 1E+02 0.0035 23.9 4.0 20 321-340 19-38 (85)
281 1wfd_A Hypothetical protein 15 20.4 1E+02 0.0034 24.8 4.0 32 320-351 20-59 (93)
282 4g26_A Pentatricopeptide repea 20.2 1.6E+02 0.0055 29.4 6.3 112 264-385 98-220 (501)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=1.7e-06 Score=73.35 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-. .++|..-. --+..|..++..|+|.+|+..|++|+.+-|... .+.+.++.||..+|+
T Consensus 49 ~g~~~eA~~~~~~al--~~~P~~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLC--IYDFYNVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKA 119 (151)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCCHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCC
Confidence 345566777776544 45555433 356679999999999999999999999887654 577899999999999
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHHHHhhHHH
Q 013954 331 PKEARIMYEKLQ-SHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~~eVrKQAkrLlyiLE 361 (433)
.++|+..|++.. ..|+..++++|+.+|-.++
T Consensus 120 ~~eA~~~~~~al~l~~~~~~~~~A~~ll~~l~ 151 (151)
T 3gyz_A 120 PLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151 (151)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999999999985 6999999999999997764
No 2
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=2.2e-06 Score=68.70 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch---hHHHHHHHHHHHH
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQD 326 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L---GGeaqLwLAiAyd 326 (433)
+..+..+.+..|.+-. +++|..- .--+..|..++..|+|.+|+..|++|+++-+..... -+.+-..++.||.
T Consensus 20 ~~~~~~~A~~~y~~Al--~~~p~~~---~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAI--ELDPSNI---TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3456678888888654 6677653 346678999999999999999999999887655432 2667788999999
Q ss_pred hcCChHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 013954 327 SLHRPKEARIMYEKL-QSHPNALVSKRARQF 356 (433)
Q Consensus 327 A~GR~~EAiaLYkkL-~sHP~~eVrKQAkrL 356 (433)
+.|+.++|+..|++- ..||++++.++-+++
T Consensus 95 ~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l 125 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence 999999999999985 579999988765543
No 3
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=1.2e-05 Score=61.08 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
..+.+..|++-. ..+|......+..+..|..++..|+|.+|+.+|+++++.-+. +..-..+.++++.||...|+.++
T Consensus 18 ~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 18 YDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp HHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHH
Confidence 334444444332 223443333456788899999999999999999999987654 33457889999999999999999
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHhhHHH
Q 013954 334 ARIMYEKLQ-SHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 334 AiaLYkkL~-sHP~~eVrKQAkrLlyiLE 361 (433)
|+..|+++. .+|+......|+..+-.++
T Consensus 95 A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 95 AQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999985 7898888777777665544
No 4
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=4e-05 Score=58.69 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ----SHPNALVSKRA 353 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~----sHP~~eVrKQA 353 (433)
...+..|..++..|+|.+|+.+|++|++.-+... .+.+.++.||...|+.++|+..|++.. .+++....++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 3467889999999999999999999999876644 478889999999999999999999875 35555555555
Q ss_pred HHHh
Q 013954 354 RQFM 357 (433)
Q Consensus 354 krLl 357 (433)
.+++
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 5
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.96 E-value=3.1e-05 Score=66.93 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc----------CChHHHHHHHHHHh-cCCCHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL----------HRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~----------GR~~EAiaLYkkL~-sHP~~e 348 (433)
.+..|..++..|+|.+|+..|+++++.-+ .+....++.++++.||..+ |+.++|+..|+++. .||+-.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 38889999999999999999999998754 5667788999999999988 99999999999996 799888
Q ss_pred HHHHHHHHhhHHH
Q 013954 349 VSKRARQFMFSFQ 361 (433)
Q Consensus 349 VrKQAkrLlyiLE 361 (433)
.-++|..++--+.
T Consensus 230 ~~~~a~~~l~~~~ 242 (261)
T 3qky_A 230 LLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788877665443
No 6
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=8.6e-05 Score=54.77 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999987654 4677889999999999999999999975 56764
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=9e-05 Score=57.34 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHH
Q 013954 256 QLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 335 (433)
Q Consensus 256 e~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 335 (433)
+.+..|++-.-+..+ ........+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.+++||...|+.++|+
T Consensus 8 ~A~~~~~~al~~~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQ--GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp CCHHHHHHHHSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHH
Confidence 345555555433322 22345567888999999999999999999999987665 678899999999999999999
Q ss_pred HHHHHHh-cCCCH
Q 013954 336 IMYEKLQ-SHPNA 347 (433)
Q Consensus 336 aLYkkL~-sHP~~ 347 (433)
..|++.. .+|+.
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 9999975 45543
No 8
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.87 E-value=9.8e-05 Score=58.09 Aligned_cols=72 Identities=11% Similarity=0.002 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc---chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+.-|..|+.+|+.|+|..|+.+|+.|++...... .--..+-.+|+.||...|+.++|+.+|+++. -.|+-..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 4568999999999999999999999999875543 2345788899999999999999999999985 6776543
No 9
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.83 E-value=3.9e-05 Score=62.05 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc--------------cchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--------------SELHGLAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~--------------S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
..++.....|..+|..|+|.+|+.+|++|+..++.. ......+.+.++.||-.+|+.++|+..|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 455566666777777777777777777776664221 122334555666667667777777766666
Q ss_pred Hh
Q 013954 341 LQ 342 (433)
Q Consensus 341 L~ 342 (433)
..
T Consensus 89 al 90 (162)
T 3rkv_A 89 VL 90 (162)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.81 E-value=0.0001 Score=58.91 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-+ ..+|... .-.+..|..++..|+|.+|+..|++|+.+-+... .+.+.++.||...|+.
T Consensus 32 g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 32 GKWDDAQKIFQALC--MLDHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPFHAAECHLQLGDL 102 (142)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHH--HhCCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCH
Confidence 34455555565443 3344432 2356678999999999999999999998876554 4568899999999999
Q ss_pred HHHHHHHHHHh-cCC----CHHHHHHHHHHhhHH
Q 013954 332 KEARIMYEKLQ-SHP----NALVSKRARQFMFSF 360 (433)
Q Consensus 332 ~EAiaLYkkL~-sHP----~~eVrKQAkrLlyiL 360 (433)
++|+..|++.. .+| ...+++++..++-.+
T Consensus 103 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999874 344 456666666665444
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.81 E-value=9.4e-05 Score=59.42 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.|||+. ++.....|..+|..|+|.+|+.+|++|++.-+.. ..+-..++.||..+|+.++|+..|++.. .+|+
T Consensus 7 ~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 7 YINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 366653 4456678999999999999999999999887655 3566778999999999999999999874 4554
No 12
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.0002 Score=53.01 Aligned_cols=82 Identities=16% Similarity=0.045 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 353 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 353 (433)
...+..|..++..|+|.+|+.+|+++++..+...... ..+.+.++.+|...|+.++|+..|++.. .+|+..+....
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3457789999999999999999999999876442222 6778889999999999999999999985 67887777665
Q ss_pred HHHhhH
Q 013954 354 RQFMFS 359 (433)
Q Consensus 354 krLlyi 359 (433)
.++.-.
T Consensus 119 ~~~~~~ 124 (131)
T 1elr_A 119 QQAEKI 124 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 13
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0001 Score=56.81 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4556667777777777777777777777766543 3556667777777777777777777764 3554
No 14
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.79 E-value=6.8e-05 Score=64.39 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
++..|..|..+|..|+|.+|+..|+++++.-+ .+...-++.++++.||...|+.++|+..|+++. .||.-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 35688999999999999999999999998654 456677899999999999999999999999985 688643
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.78 E-value=0.00014 Score=59.83 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-+ .++|.... ..+..|..++..|+|.+|+..|++|+.+-+... .+.+.++.||...|+
T Consensus 34 ~g~~~~A~~~~~~al--~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 34 SGXYEDAHXVFQALC--VLDHYDSR---FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGE 104 (148)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHH--HcCcccHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCC
Confidence 344556666666544 34454332 246779999999999999999999998876544 566889999999999
Q ss_pred hHHHHHHHHHHh-cCCC----HHHHHHHHHHhhHHH
Q 013954 331 PKEARIMYEKLQ-SHPN----ALVSKRARQFMFSFQ 361 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~----~eVrKQAkrLlyiLE 361 (433)
.++|+..|++.. ..|. ..++.++..++-.++
T Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999875 4454 566777777766554
No 16
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00011 Score=55.85 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..|..|..++..|+|.+|+.+|++++..-+ .+.....+.++++.||-..|+.++|+..|+++. .+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 367889999999999999999999998765 445566899999999999999999999999985 57764
No 17
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00057 Score=52.23 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-.. ++|.........+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+
T Consensus 41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGR 114 (148)
T ss_dssp TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCC
Confidence 3455667777776654 455544456667888999999999999999999999875543 5677889999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013954 331 PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~ 346 (433)
.++|+..|++.. .+|+
T Consensus 115 ~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 999999999985 4664
No 18
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00015 Score=57.90 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+.+......|..+|..|+|.+|+.+|++|+++-|.. ..+-..++.||-..|+.++|+..|++..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445567999999999999999999999987654 4566779999999999999999999874
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.70 E-value=0.0003 Score=57.54 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
.+.+.++.|.+.. ..+| +.....|..|..++..|+|.+|+++|++|++.-|.. .++...++.||...|+.+
T Consensus 12 ~~e~ai~~~~~a~--~~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 12 DVERYIASVQGST--PSPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHHHS--CSHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhc--ccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchH
Confidence 4455677776555 2233 444557889999999999999999999999987654 567888999999999999
Q ss_pred HHHHHHHHHh-cCCC
Q 013954 333 EARIMYEKLQ-SHPN 346 (433)
Q Consensus 333 EAiaLYkkL~-sHP~ 346 (433)
+|+..|++.. .+|+
T Consensus 83 ~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 83 KAVECYRRSVELNPT 97 (150)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 9999999975 5775
No 20
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.65 E-value=0.00026 Score=51.21 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+.+|++++...+. .....+...++.||... |+.++|+..++++. .||+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 3567889999999999999999999887655 23456788899999999 99999999999986 5664
No 21
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.63 E-value=0.00013 Score=53.95 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH-HHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL-AALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe-aqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.|..|..++..|+|.+|+..|+++++.-+.. .. +.++++.||...|+.++|+..|++.. .+|+-
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 4788999999999999999999999986554 34 78889999999999999999999985 56653
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.63 E-value=0.00024 Score=57.52 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-+ .++|.. ..-.+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.||...|+.
T Consensus 25 g~~~~A~~~~~~al--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 25 KEYSKAIDLYTQAL--SIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADY 95 (164)
T ss_dssp TCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCH
Confidence 34455555555443 333332 2234555666666666666666666666665432 45556666666666777
Q ss_pred HHHHHHHHHHh
Q 013954 332 KEARIMYEKLQ 342 (433)
Q Consensus 332 ~EAiaLYkkL~ 342 (433)
++|+..|++..
T Consensus 96 ~~A~~~~~~al 106 (164)
T 3sz7_A 96 KGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666653
No 23
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.001 Score=47.39 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.++|+..|++.. .+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999886543 4677889999999999999999999985 56653
No 24
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.60 E-value=0.00029 Score=60.84 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++..|..|..+|..|+|.+|+..|+++++.-+ .+....++.++++.||-..|+.++|+..|+++. .+|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 45689999999999999999999999998765 445668999999999999999999999999996 5774
No 25
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00087 Score=51.09 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=60.6
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHH
Q 013954 258 LAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIM 337 (433)
Q Consensus 258 LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaL 337 (433)
+..|++-+ .++|.. ....+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.|+.||...|+.++|+..
T Consensus 5 ~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 5 TERLEAML--AQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp HHHHHHHH--TTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH--HhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Confidence 44454443 344543 2357788999999999999999999999886543 56778999999999999999999
Q ss_pred HHHHh
Q 013954 338 YEKLQ 342 (433)
Q Consensus 338 YkkL~ 342 (433)
|++..
T Consensus 76 ~~~al 80 (115)
T 2kat_A 76 WESGL 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 26
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00038 Score=50.61 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 4455666777777777777777777776665432 3455666777777777777777777664 3443
No 27
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.51 E-value=0.00031 Score=59.42 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..+..|..++..|+|.+|+.+|++|+++-|.+ ..+-+.|+.||...||.++|+..|++.. -.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45568999999999999999999999999987654 3466779999999999999999999985 4665
No 28
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.49 E-value=0.0011 Score=56.94 Aligned_cols=65 Identities=8% Similarity=0.006 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
+..|..++.+|+|.+|+..|+++++.-|. +....++...++.||..+|+.++|+..+++|. .+|.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 67899999999999999999999988765 44566899999999999999999999999996 4443
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.49 E-value=0.00045 Score=51.68 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.....+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|+.++|+.+|++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445556666666666666666666666554332 4455556666666666666666666653
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.48 E-value=0.0006 Score=54.41 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 267 LNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 267 l~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
+.++|.. .+..+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+..|++.. ..|
T Consensus 11 l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 11 RGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp TTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4556553 4557899999999999999999999999887654 4567789999999999999999999985 455
Q ss_pred C
Q 013954 346 N 346 (433)
Q Consensus 346 ~ 346 (433)
+
T Consensus 84 ~ 84 (142)
T 2xcb_A 84 N 84 (142)
T ss_dssp T
T ss_pred C
Confidence 4
No 31
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.001 Score=50.81 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.++..+..|..++..|+|.+|+++|+++++..+.. ..-..+.++++.||-..|+.++|+..|++.. .+|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 35567889999999999999999999999876532 2236788889999999999999999999975 5664
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.48 E-value=0.00057 Score=50.56 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.++..+..|..++..|+|.+|+.+|+++++..+.. ..+.+.++.||-..|+.++|+..|++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45667889999999999999999999999987543 4677889999999999999999999985
No 33
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.47 E-value=0.00058 Score=52.33 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
++..+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 3456777888888888888888888888776543 4567778888888888888888888775 4555
No 34
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.46 E-value=0.00077 Score=52.50 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.||...|+.++|+..|++.
T Consensus 51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 51 GNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444555555555555555554443221 233444555555555555555555444
No 35
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.45 E-value=0.00057 Score=56.11 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 268 NVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 268 ~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.++|. .....+..|..++..|+|.+|+.+|++++..-+.+. .+...++.||...|+.++|+..|++.. ..|+
T Consensus 15 ~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 15 EISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp TCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44554 345578899999999999999999999998876653 556789999999999999999999985 4554
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.001 Score=51.15 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|.+-. .++|.. ..-.+..|..++..|+|.+|+..|++|++.-+.. ..+.+.++.||...|
T Consensus 16 ~~~~~~~A~~~~~~al--~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMI--KRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVK 86 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHh
Confidence 3445566777776554 445543 2446778999999999999999999999987654 567889999999999
Q ss_pred ChHHHHHHHHHHh-cC
Q 013954 330 RPKEARIMYEKLQ-SH 344 (433)
Q Consensus 330 R~~EAiaLYkkL~-sH 344 (433)
+.++|+..|++.. .+
T Consensus 87 ~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 87 EYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999885 45
No 37
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.43 E-value=0.00024 Score=56.42 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-+ .++|.. .+..+..|..++..|++.+|+..|++|+++-|.. ..+.+.|+.||...|
T Consensus 29 ~~g~~~~A~~~~~~al--~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 29 KLANLAEAALAFEAVC--QKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEH 99 (121)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH--HHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence 3344555566665443 344443 2335677888888888888888888888776654 346677888888888
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013954 330 RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~ 346 (433)
+.++|+..|+++. .+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 8888888888764 4553
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0012 Score=52.93 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|.+-. .++|..- ..-+..|..++..|+|.+|+..|++|+++-+.. ..+-+.++.||...|
T Consensus 25 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAV--KRDPENA---ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMR 95 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCH---HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHCC
Confidence 3456778888887654 5666643 346778999999999999999999999886554 467889999999999
Q ss_pred ChHHHHHHHHHHh-cCCCH
Q 013954 330 RPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~~ 347 (433)
+.++|+..|++.. -+|+-
T Consensus 96 ~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 9999999999985 57753
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.40 E-value=0.0031 Score=47.04 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|.+-. .++|.. ....+..|..++..|+|.+|+.+|++++..-+. ...+.+.++.||...|+.
T Consensus 30 ~~~~~A~~~~~~al--~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 30 GDYPQAMKHYTEAI--KRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----FIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp TCSHHHHHHHHHHH--TTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHhhH
Confidence 34455666666544 344443 345678899999999999999999999987654 356788899999999999
Q ss_pred HHHHHHHHHHh-cCCCH
Q 013954 332 KEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 332 ~EAiaLYkkL~-sHP~~ 347 (433)
++|+..|++.. .+|+.
T Consensus 101 ~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 99999999985 56653
No 40
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.39 E-value=0.0014 Score=48.18 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
......+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|++.. .+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 445566777888888888888888888887765433 4566777888888888888888888774 4554
No 41
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.37 E-value=0.00044 Score=61.57 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc-------c-chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK-------S-ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~-------S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+++...+..|..+|..|+|.+|+..|++|+++.+.. . ...-.+-..++.||..+||.+||+..|++..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3678889999999999999999999999999998872 1 1123367779999999999999999999875
No 42
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.35 E-value=0.0014 Score=47.30 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++|+..|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3567899999999999999999999987553 4577889999999999999999999985 5665
No 43
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.35 E-value=0.00088 Score=55.80 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.+..|..++..|+|.+|+.+|++|++.-+ -...+.+.++.||...|+.++|+..|++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33445555555555555555555555421 23445555555555555555555555554
No 44
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.00054 Score=58.44 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH----------------HHHHHHhcCChHHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ----------------WSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw----------------LAiAydA~GR~~EAiaLYkk 340 (433)
++..+..|..++..|+|.+|+.+|++++..-|.+ .++.+| ++.||...|+.++|+..|++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4568899999999999999999999999887654 345667 99999999999999999999
Q ss_pred Hh-cCCCH
Q 013954 341 LQ-SHPNA 347 (433)
Q Consensus 341 L~-sHP~~ 347 (433)
.. .+|+-
T Consensus 80 al~~~p~~ 87 (208)
T 3urz_A 80 LLQKAPNN 87 (208)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 85 67753
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.33 E-value=0.0032 Score=50.83 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
....++..+..|..++..|+|.+|+.+|++|+++-+.. ..+.+.++.||-..|+.++|+..|++.. .+|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34567778999999999999999999999999987654 5678889999999999999999999985 5666
No 46
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.32 E-value=0.00076 Score=53.54 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
...+..|..++..|++.+|+..|++|+..-+.. .++.+.++.||...|+.++|+..|++.. ..|+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346889999999999999999999999987654 5677889999999999999999999985 5664
No 47
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.29 E-value=0.0019 Score=54.29 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcc-cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMV-FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~-~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+.+|+++++.-+ ... .+..+++.||...|+.++|+..|++.. .+|+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 345556666666666666666666655554 222 344555566666666666666655553 3444
No 48
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.00059 Score=67.48 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=84.8
Q ss_pred ccccccCCC--------CCCccccCCC-------cccCCCCccC-----cHHHHHHHHHHHHHHHHHHH-----------
Q 013954 214 STWGVFPRP--------GNISKTFGGG-------RTIRPGDVLE-----TAEARAAKEERTRQLLAAYK----------- 262 (433)
Q Consensus 214 sTWGvFPRP--------~NISkayGGG-------R~IrpGe~lE-----teEEkaaRe~rtke~LaaYr----------- 262 (433)
..+|+||.. .|....|.|+ |.|++|+++. ...-..+|.+.+ ...|.
T Consensus 194 ~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L---~~~~~F~C~C~~C~~~ 270 (429)
T 3qwp_A 194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL---RDQYCFECDCFRCQTQ 270 (429)
T ss_dssp EEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHH---HHHHCCCCCSHHHHHT
T ss_pred ceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHH---hccCCeEeeCCCCCCC
Confidence 358888864 3777778877 7899999862 111122333332 22221
Q ss_pred --hhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccccchhHHHHHHHHHHHHhcCChHHHHH
Q 013954 263 --KSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARI 336 (433)
Q Consensus 263 --k~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAia 336 (433)
...=+..++.....+++++..-..+...|+|.+|+++|+++++.. ......-..+--.|+.+|...|+.++|+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~ 350 (429)
T 3qwp_A 271 DKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALF 350 (429)
T ss_dssp TTHHHHTCSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHH
Confidence 000023334445667888888899999999999999999998653 23333336677789999999999999999
Q ss_pred HHHHH
Q 013954 337 MYEKL 341 (433)
Q Consensus 337 LYkkL 341 (433)
+|++.
T Consensus 351 ~~~~~ 355 (429)
T 3qwp_A 351 YGTRT 355 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.24 E-value=0.0016 Score=52.64 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
-+..|..++.+|+|.+|+.+|++|++.-|.. .++...++.||...|+.++|+..|+++. .+|+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4678999999999999999999999886654 4678889999999999999999999985 45554
No 50
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0036 Score=45.38 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
...+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...|+.++|+..|++.. .+|+.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 34677899999999999999999999998654 35778889999999999999999999985 56643
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.20 E-value=0.002 Score=55.19 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-. .++|..- ...+..|..++..|++.+|+..|++|++.- . ..++.+.++.||...|+.
T Consensus 98 g~~~~A~~~~~~al--~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 98 GYLEQALSVLKDAE--RVNPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE-D----TPEIRSALAELYLSMGRL 167 (217)
T ss_dssp HHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHH--HhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----chHHHHHHHHHHHHcCCH
Confidence 56777777887655 4556533 335778999999999999999999999876 2 356778999999999999
Q ss_pred HHHHHHHHHHh-cCCCHH
Q 013954 332 KEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 332 ~EAiaLYkkL~-sHP~~e 348 (433)
++|+..|+++. .+|+-.
T Consensus 168 ~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 168 DEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCCCCh
Confidence 99999999985 677643
No 52
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.19 E-value=0.0055 Score=45.04 Aligned_cols=66 Identities=17% Similarity=0.087 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
...+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 346778999999999999999999999876543 5678889999999999999999999985 56643
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.16 E-value=0.0083 Score=46.62 Aligned_cols=71 Identities=8% Similarity=-0.020 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.....++..+..|..++..|+|.+|+.+|+++++.-+.. ..+.+.++.||-..|+.++|+..|++.. .+|.
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 344677888999999999999999999999999986554 6778889999999999999999999985 5664
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.15 E-value=0.0014 Score=55.44 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
-.+..|..++..|+|.+|+.+|+++++...... ..-..+...++.+|...|+.++|+..|++..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344445555555555555555555544432221 1223344445555555555555555555554
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.14 E-value=0.0017 Score=52.50 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 346 (433)
..+..|..++..|+|.+|+..|+++++.-+.. ..+...++.||...|+.++|+..|++. +.+|+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 35667999999999999999999999886654 467788999999999999999999986 45663
No 56
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.12 E-value=0.0022 Score=49.01 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-+ .++|.. ..-.+..|..++..|+|.+|+.+|++|+..-+. ...+.+.++.||...|
T Consensus 21 ~~~~~~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 21 VGRKYPEAAACYGRAI--TRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEME 91 (137)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTT
T ss_pred HhCcHHHHHHHHHHHH--hhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHHh
Confidence 3344556666666544 344443 344677899999999999999999999998655 4568889999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013954 330 RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~ 346 (433)
+.++|+..|++.. .+|+
T Consensus 92 ~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 92 SYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHChh
Confidence 9999999999985 3443
No 57
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.12 E-value=0.0032 Score=50.73 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
+.-.+..|..++..|+|.+|+.+|++|+.+-+.. ..+-+.++.||..+|+.++|+..|++.. .+|+-
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETN----EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 3456778999999999999999999999986543 4678899999999999999999999975 57763
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.11 E-value=0.0033 Score=54.17 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+..|+++++..+....+...+.+.++.||...|+.++|+.+|++.. .+|+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3456688999999999999999999998888777777777889999999999999999999986 4664
No 59
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.10 E-value=0.0073 Score=44.01 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..+..|..++..|+|.+|+.+|++++...+.. ..+...++.+|...|+.++|+..|+++. .+|+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35566888888888888888888887765433 3456677888888888888888888774 45543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.09 E-value=0.0015 Score=58.81 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc--cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
...+..|..++..|+|.+|+.+|++|++..... ...-..+...++.+|...|+.++|+..|++...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555666666666666666655544322 122344455556666666666666666666553
No 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.09 E-value=0.0075 Score=50.13 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCchhhhhhHHHHHHhhccccc------------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 290 SGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 290 rGkYreAV~~lEkA~~~v~~~S------------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.|+|.+|+.+|++|+...+... .+-..+..+++.||-..|+.++|+..|++.. .+|.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 3678888888888887665544 2334677889999999999999999999985 5664
No 62
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.0047 Score=52.59 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+..|..++..|+|.+|+..|++|+++-|.. ..+.+.++.||...|+.++|+..|+++. .+|+-..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNN----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 338999999999999999999999987654 4778899999999999999999999985 6886543
No 63
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.02 E-value=0.0031 Score=47.66 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+.+|+++++...... ..-+.+..+++.+|-..|+.++|+..|++..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555677888999999999999999999988775432 2224577788999999999999999998864
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.02 E-value=0.0086 Score=58.21 Aligned_cols=78 Identities=12% Similarity=-0.061 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhCCch-hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKL-KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQ 355 (433)
Q Consensus 278 eea~~~Gk~amerGkY-reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkr 355 (433)
+..+..|..++..|+| .+|+.+|++|+++-+.. ..+...|+.||-..|+.++|+..|++.. ..|+..+...-..
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~ 178 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3456679999999999 99999999999986543 5688899999999999999999999985 6888554444444
Q ss_pred HhhH
Q 013954 356 FMFS 359 (433)
Q Consensus 356 Llyi 359 (433)
+++-
T Consensus 179 ~~~~ 182 (474)
T 4abn_A 179 VLRQ 182 (474)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4333
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0024 Score=52.78 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+++..+..|..++..|+|.+|+.+|+++++.- . ...+...++.||...|+.++|+..|+++.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----DITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 567788999999999999999999999999886 2 25788899999999999999999999985
No 66
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.01 E-value=0.0045 Score=45.11 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
....+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|+.++|+.+|++.. .+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 3446778999999999999999999999876533 4577889999999999999999999985 4553
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.00 E-value=0.0058 Score=50.20 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc------------chhHHHHHHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS------------ELHGLAALQW 321 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S------------~LGGeaqLwL 321 (433)
..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++..+.+. .-...+...+
T Consensus 53 ~~~A~~~~~~al--~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 53 MTEAEKAFTRSI--NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 344444554433 223332 23456778888899999999999999888776543 2235778888
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 322 SICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 322 AiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
+.||...|+.++|+..|++.. .+|...
T Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999998875 567653
No 68
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0075 Score=49.76 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch---hHHHHHHHHHHHHhcC
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL---HGLAALQWSICQDSLH 329 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L---GGeaqLwLAiAydA~G 329 (433)
+..+.+..|++-..++ +. ....+..|..++..|+|.+|+.+|+++++..+....- -..+...++.||...|
T Consensus 20 ~~~~A~~~~~~a~~~~-~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH-KD-----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp CHHHHHHHHHHHHHHS-CC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhh-cc-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 3445555555544333 11 2346778999999999999999999999987654211 2688889999999999
Q ss_pred ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013954 330 RPKEARIMYEKLQ-SHPNALVSKRARQF 356 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~~eVrKQAkrL 356 (433)
+.++|+..|++.. .+|...+-.+..++
T Consensus 94 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 9999999999986 68887665554444
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.97 E-value=0.0022 Score=56.63 Aligned_cols=89 Identities=11% Similarity=-0.010 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhc
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLK-SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSL 328 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k-~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~ 328 (433)
.+..+.+..|++-.. ++|... ..+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.+|...
T Consensus 23 g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 344555666655443 334322 2344555666666667777777777776666553322 22345555666667777
Q ss_pred CChHHHHHHHHHHh
Q 013954 329 HRPKEARIMYEKLQ 342 (433)
Q Consensus 329 GR~~EAiaLYkkL~ 342 (433)
|+.++|+..|++..
T Consensus 101 g~~~~A~~~~~~al 114 (406)
T 3sf4_A 101 GNFDEAIVCCQRHL 114 (406)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776666
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0028 Score=58.13 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-.- ++|. ....+..|..++..|+|.+|+..|+++++.-+.. ..+.+.++.||...|+.
T Consensus 20 g~~~~A~~~~~~al~--~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 20 KKYDDAIKYYNWALE--LKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY----SKVLLRRASANEGLGKF 89 (514)
T ss_dssp SCHHHHHHHHHHHHH--HCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHh--cCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH----HHHHHHHHHHHHHHhhH
Confidence 344555555654442 2332 3345556667777777777777777766654432 24556667777777777
Q ss_pred HHHHHHHHHHh
Q 013954 332 KEARIMYEKLQ 342 (433)
Q Consensus 332 ~EAiaLYkkL~ 342 (433)
++|+..|+++.
T Consensus 90 ~~A~~~~~~~~ 100 (514)
T 2gw1_A 90 ADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 71
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.92 E-value=0.0023 Score=61.09 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhccc------------ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVF------------KSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
+..+..|..++..|+|.+|+.+|++|+..++. .......+.+.++.||-..|+.++|+..|++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33444455555555555555555555543322 11222344444555555555555555555554
No 72
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.89 E-value=0.0047 Score=55.64 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVS 350 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVr 350 (433)
..+..+..|..++..|++.+|+..|+++++.-|.+ ..+.+.|+.+|-..||.++|+.+|+++. .+|+....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 34567899999999999999999999999988765 4678899999999999999999999995 68876544
No 73
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.89 E-value=0.0053 Score=58.87 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 327 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 327 (433)
..+.+|..+.+..+++..... |+. ....-.|-.|..+-..|++.+|+.+|++|...- ..-..--++++++++||..
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~-d~~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWP-DKF--LAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCS-CHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccC-Ccc--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHH
Confidence 455667777777776443222 333 233456888999999999999999999997321 0011256899999999999
Q ss_pred cCChHHHHHHHHHHh-cCCC
Q 013954 328 LHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~-sHP~ 346 (433)
.||.+||+++|+++. .+|.
T Consensus 221 lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCc
Confidence 999999999999996 7998
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.87 E-value=0.0038 Score=56.24 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-+ .++|. .....+..|..++..|+|.+|+..|++|++.-+.. ..+...++.+|...|
T Consensus 16 ~~g~~~~A~~~~~~al--~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAI--TRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEME 86 (281)
T ss_dssp HTTCHHHHHHHHHHHH--HHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHH--HhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcC
Confidence 3344556666666444 23332 24455667888888888888888888888765433 356677888888888
Q ss_pred ChHHHHHHHHHHh-cCC
Q 013954 330 RPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP 345 (433)
+.++|+..|++.. .+|
T Consensus 87 ~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAK 103 (281)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 8888888887753 344
No 75
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.86 E-value=0.00071 Score=58.04 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-.-++ + ..+-.+..|..++..|+|.+|+..|+++++.-|... .+.+.++.+|...|+.
T Consensus 132 g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL----DLRVRYASALLLKGKA 201 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHTC----
T ss_pred CChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCH
Confidence 34556666676655444 2 123457889999999999999999999999876543 6778899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 013954 332 KEARIMYEKLQSHPN 346 (433)
Q Consensus 332 ~EAiaLYkkL~sHP~ 346 (433)
++|+..|++.-.|-+
T Consensus 202 ~~A~~~~~~~~~~~~ 216 (217)
T 2pl2_A 202 EEAARAAALEHHHHH 216 (217)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999987643
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.86 E-value=0.003 Score=53.31 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.+..|..++..|+|.+|+.+|+++++ .+.+..+-+.+-+.++.||...|+.++|+..|++.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34445555555555555555555555 33444444555555555555555555555555555
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.86 E-value=0.009 Score=49.63 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
..+...+..|..++..|+|.+|+.+|++|++... ........+...++.||...|+.++|+.+|++...
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677889999999999999999999988752 22345578888999999999999999999999854
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.85 E-value=0.013 Score=49.06 Aligned_cols=88 Identities=6% Similarity=0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhcCC
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSLHR 330 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~GR 330 (433)
..+.+..|++-. .++|. .....+..|..++..|+|.+|+..|+++++.-+.+..+. +.+-+.++.||...|+
T Consensus 58 ~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 58 YKEAADYFDIAI--KKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHHHHHHHHHH--HTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH--HhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 334444454433 33444 233356678888888888888888888887776655332 3456667788888888
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013954 331 PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~ 346 (433)
.++|+..|++.. .+|+
T Consensus 133 ~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 133 IEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 888888888875 4665
No 79
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.83 E-value=0.013 Score=49.20 Aligned_cols=62 Identities=8% Similarity=-0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.+|-..|+.++|+.+|++..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555666666666666666666666554332 2344455555555555555555555553
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.81 E-value=0.0046 Score=53.26 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-.. .+|. .....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+
T Consensus 16 ~g~~~~A~~~~~~~l~--~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 16 AGQLADALSQFHAAVD--GDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----TAARLQRGHLLLKQGK 86 (359)
T ss_dssp TTCHHHHHHHHHHHHH--HCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHh--hCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHcCC
Confidence 3445566666665442 2332 25566677888888888888888888888775433 3667788888888888
Q ss_pred hHHHHHHHHHHh-cCC
Q 013954 331 PKEARIMYEKLQ-SHP 345 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP 345 (433)
.++|+..|+++. .+|
T Consensus 87 ~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHhcCC
Confidence 888888888885 466
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.81 E-value=0.0036 Score=56.88 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCC
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHP 345 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP 345 (433)
+..|..++..|+|.+|+.+|+++++..+....+-..+...++.||...|+.++|+.+|++. ..+|
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4446667777777777777777766655544444455556666666666666666666664 3455
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.80 E-value=0.0097 Score=49.43 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcC
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~G 329 (433)
.++.|.-+++..+.+ ....+...+..|..++..|+|.+|+.+|++|++... .....-..+...++.||-..|
T Consensus 24 ~~~al~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 24 CKQALEDLEKTSGHD----HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHCSS----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 344555554444321 234566678899999999999999999999988752 223455778889999999999
Q ss_pred ChHHHHHHHHHHhc
Q 013954 330 RPKEARIMYEKLQS 343 (433)
Q Consensus 330 R~~EAiaLYkkL~s 343 (433)
+.++|+.+|++...
T Consensus 100 ~~~~A~~~~~~al~ 113 (283)
T 3edt_B 100 KYKEAEPLCKRALE 113 (283)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999999853
No 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.78 E-value=0.0035 Score=60.99 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
..+..|..++..|+|.+|+.+|++|+++-+.+ -.+.+.++.||-.+|+.++|+..|++.. .+|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 34455666666666666666666666655443 3455666666666666666666666653 344
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.78 E-value=0.0036 Score=58.14 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcc----------hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHH
Q 013954 251 EERTRQLLAAYKKSVGLNVDPK----------LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQ 320 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~----------~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLw 320 (433)
..+..+.+..|++-..++-+.. ....+...+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~ 235 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSR 235 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHH
Confidence 3455677777876664443321 01124556677889999999999999999999887654 467788
Q ss_pred HHHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHhhcc
Q 013954 321 WSICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAFVED 388 (433)
Q Consensus 321 LAiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af~~~ 388 (433)
++.||..+|+.++|+..|++.. .+|+- .+...-..+..-+.-.+. -....|.++|..+.+.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~ 298 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA-------REKKLYANMFERLAEE 298 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhc
Confidence 8999999999999999998874 56653 333222222222111110 0134677777777653
No 85
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.78 E-value=0.0058 Score=46.12 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
...+...+..|..++..|+|.+|+.+|+++++...... ..-+.+...++.+|...|+.++|+..|++..
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455677889999999999999999999998875432 2235677889999999999999999999874
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.006 Score=51.82 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc----ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 272 KLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF----KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 272 ~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~----~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.....++..+..|..++..|+|.+|+.+|+++++.... ....-..+...++.+|-..|+.++|+.+|++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456677889999999999999999999999987543 345567888999999999999999999999875
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.76 E-value=0.0089 Score=53.08 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhh---cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNK---MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~---v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+...+..|..++..|+|.+|+.+|++|++. .+....+...+...++.||...|+.++|+..|++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555667788888999999999999998843 433333444677788889999999999998888764
No 88
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.76 E-value=0.0037 Score=58.02 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..++..+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||-..|+.++|+..|+++. .+|+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 345555666666666666666666666666655433 2455556666666666666666666653 3444
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.76 E-value=0.0021 Score=52.88 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+..+..|..++..|+|.+|+..|+++++.-|.+ ..+.+.++.+|...|+.++|+..|+++. .+|++.+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence 457888999999999999999999999876654 4678889999999999999999999985 5665544
No 90
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.74 E-value=0.0047 Score=54.94 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcc-------hHH--HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh---H
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPK-------LKS--ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH---G 315 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~-------~k~--e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG---G 315 (433)
..+..+..+.+..|++-.. ++|. ... ....-+..|..+..-|+|.+|+..|++|+++.+...++. +
T Consensus 21 l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 3445677888999987764 4444 111 223566779999999999999999999999833333332 4
Q ss_pred HHH----HHHHHHHHhcCChHHHHHHHHHHh
Q 013954 316 LAA----LQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 316 eaq----LwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+- ..++.||..+||.+||+.-|++..
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 455 778999999999999999999974
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.74 E-value=0.0055 Score=55.29 Aligned_cols=87 Identities=15% Similarity=-0.039 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKR 352 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQ 352 (433)
..+...+..|..++..|+|.+|+.+|++|++..+...... +.+.+.++.||-..|+.++|+..|++...+|.-.-...
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e 232 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHH
Confidence 3455667889999999999999999999999876544333 34566788899999999999999999775554333334
Q ss_pred HHHHhhHHH
Q 013954 353 ARQFMFSFQ 361 (433)
Q Consensus 353 AkrLlyiLE 361 (433)
++.+.-.++
T Consensus 233 ~~~l~~l~~ 241 (307)
T 2ifu_A 233 CAALEDLLQ 241 (307)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443333333
No 92
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.73 E-value=0.0085 Score=57.17 Aligned_cols=80 Identities=11% Similarity=0.011 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC-CHHHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP-NALVSKRAR 354 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP-~~eVrKQAk 354 (433)
....+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.++.||..+|+.++|+..|++.. ..| +..+...-.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455677999999999999999999999976543 5778899999999999999999999975 566 455555544
Q ss_pred HHhhHH
Q 013954 355 QFMFSF 360 (433)
Q Consensus 355 rLlyiL 360 (433)
+++..+
T Consensus 349 ~~~~~~ 354 (370)
T 1ihg_A 349 KVKQKI 354 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 93
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.72 E-value=0.012 Score=54.59 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=34.2
Q ss_pred CchhhhhhHHHHHHhhccccc-----------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 291 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 291 GkYreAV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
|+|.+|+.+|++|+.+.+... .+-..+.+.++.||-..|+.++|+..|++.. .+|
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566666666666666666552 3334555666777777777777777776664 344
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.70 E-value=0.0079 Score=49.40 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-. ++ .....+..|..++..|+|.+|+.+|++|+..-+.. ..+.+.++.||-..|+
T Consensus 19 ~~~~~~A~~~~~~a~----~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEK 86 (213)
T ss_dssp TTCHHHHHHHHHTSS----SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHccc
Confidence 345566777777542 33 23467888999999999999999999999886543 4677889999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013954 331 PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~ 346 (433)
.++|+..|++.. .+|.
T Consensus 87 ~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 999999999985 3443
No 95
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.70 E-value=0.0035 Score=52.92 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 345 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 345 (433)
..+..|..++..|+|.+|+.+|+++++.-+... .+.+.++.||-..|+.++|+..|+++...|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 467889999999999999999999998876543 467788999999999999999999997644
No 96
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.69 E-value=0.0029 Score=58.94 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc--hhH-----------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHG-----------LAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~--LGG-----------eaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..++..+..|..++..|+|.+|+.+|++|+...+.... .-| .+.+.++.||-..|+.++|+..|++.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666788999999999999999999999988765431 112 27788999999999999999999987
Q ss_pred h-cCCC
Q 013954 342 Q-SHPN 346 (433)
Q Consensus 342 ~-sHP~ 346 (433)
. .+|+
T Consensus 257 l~~~p~ 262 (338)
T 2if4_A 257 LTEEEK 262 (338)
T ss_dssp HHHCTT
T ss_pred HHhCCC
Confidence 4 5664
No 97
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.67 E-value=0.0084 Score=46.57 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
.+..|..++..|++.+|+.+|++++...+.. ..+.+.++.+|...|+.++|+.+|+++. .+|
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 4556777777777777777777777665432 3556667777777777777777777764 344
No 98
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.64 E-value=0.01 Score=47.89 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHhc
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-HRPKEARIMYEKLQS 343 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-GR~~EAiaLYkkL~s 343 (433)
....+..|..++..|++.+|+.+|+++++..+.. ..+...++.+|-.. |+.++|+.+|+++..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 3445556777888888888888888887765443 44667778888888 888888888888765
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.61 E-value=0.0091 Score=53.44 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-H--HHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-G--LAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKR 352 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-G--eaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQ 352 (433)
....+..|..++..|+|.+|+.+|++|++..+...... + .+.+.++.||...|+.++|+..|++.. -+|.-.-...
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 44466779999999999999999999999877665432 2 356778999999999999999999986 4665443333
Q ss_pred H
Q 013954 353 A 353 (433)
Q Consensus 353 A 353 (433)
+
T Consensus 238 ~ 238 (292)
T 1qqe_A 238 S 238 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.60 E-value=0.013 Score=42.69 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..++..|++.+|+.+|++++..-+.. ..+.+.++.+|-..|+.++|+.+|+++. .+|.
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4556888888888888888888888765432 3456677888888888888888888874 4553
No 101
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.59 E-value=0.01 Score=47.96 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.+..|..++..|++.+|+.+|+++++..+.. ..+...++.+|...|+.++|+..|++.
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666666554332 345555666666666666666666665
No 102
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.58 E-value=0.018 Score=44.65 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.+..|++-. ..+|.. ....+..|..++..|++.+|+.+|+++++..+.. ..+.+.++.+|...|+
T Consensus 21 ~~~~~~A~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 21 AGRYSQAVMLLEQVY--DADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQK 91 (186)
T ss_dssp HTCHHHHHHHHTTTC--CTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTC
T ss_pred hcCHHHHHHHHHHHH--HhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcC
Confidence 344556666676443 444543 3446778999999999999999999999885443 4677888999999999
Q ss_pred hHHHHHHHHHHh-cCCC
Q 013954 331 PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~ 346 (433)
.++|+.+|+++. .+|.
T Consensus 92 ~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPI 108 (186)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 999999999985 4664
No 103
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.57 E-value=0.03 Score=46.77 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
..+.+..|++-.....+|. .....+..|..++..|++.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPE---RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHH
Confidence 3444455554433112332 33456778999999999999999999999876543 5677889999999999999
Q ss_pred HHHHHHHHh-cCCC
Q 013954 334 ARIMYEKLQ-SHPN 346 (433)
Q Consensus 334 AiaLYkkL~-sHP~ 346 (433)
|+..|+++. .+|.
T Consensus 194 A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhCcC
Confidence 999999985 4553
No 104
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.018 Score=48.94 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc----cchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~----S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
..+...+..|..++..|+|.+|+.+|+++++..... ...-..+...++.||...|+.++|+.+|++...
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667788999999999999999999999875332 445567888899999999999999999999853
No 105
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.54 E-value=0.013 Score=49.05 Aligned_cols=60 Identities=12% Similarity=-0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
.+..|..++..|++.+|+.+|+++++.-+.. ..+.+.++.+|...|+.++|+.+|+++..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445677777777777777777777665432 45666677777777777777777777754
No 106
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.46 E-value=0.012 Score=52.36 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.++|+..|++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555555555555555555554443322 334444455555555555555555544
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.43 E-value=0.017 Score=47.08 Aligned_cols=86 Identities=9% Similarity=-0.047 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
+..+.+..|++-. .++|..- +.-+..|..++..|++.+|+.+|++|+++-|.. -++.+.++.+|...|+.+
T Consensus 46 ~~~~A~~~~~~al--~~~p~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 46 EYDLAKKYICTYI--NVQERDP---KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ----KDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp CHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChH
Confidence 3444555555443 4555542 346678999999999999999999999987654 457788999999999998
Q ss_pred HHHHHH-HH-HhcCCCH
Q 013954 333 EARIMY-EK-LQSHPNA 347 (433)
Q Consensus 333 EAiaLY-kk-L~sHP~~ 347 (433)
+|+..| ++ |+-+|+-
T Consensus 117 ~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 117 GRAKYWVERAAKLFPGS 133 (150)
T ss_dssp SHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 877654 65 4567753
No 108
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.41 E-value=0.023 Score=47.65 Aligned_cols=66 Identities=20% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
..+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||-..|+.++|+..|++.. .+|+..
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 35667999999999999999999999987654 4678889999999999999999999985 566654
No 109
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.39 E-value=0.013 Score=47.25 Aligned_cols=68 Identities=15% Similarity=0.005 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc---chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS---ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S---~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+.+|+++++...... ..-+.+...++.+|-..|+.++|+..|++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566778889999999999999999888754322 2446677788889999999999998888764
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.38 E-value=0.015 Score=42.36 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..++..|++.+|+.+|+++++.-+.. ..+...++.+|-..|+.++|+.+|+++. .+|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 4667899999999999999999998875432 4566778999999999999999999985 4554
No 111
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.00076 Score=49.61 Aligned_cols=85 Identities=9% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCC
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR 330 (433)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+..|++|++.-+... ..-+.+.+.++.||.++|+
T Consensus 19 ~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 19 LYREAVHCYDQLI--TAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666544 345543 33467889999999999999999999999876652 2237788899999999999
Q ss_pred hHHHHHHHHHHh
Q 013954 331 PKEARIMYEKLQ 342 (433)
Q Consensus 331 ~~EAiaLYkkL~ 342 (433)
.++|+..++++.
T Consensus 94 ~~~a~~~~~~~~ 105 (111)
T 2l6j_A 94 VQIPVVEVDELP 105 (111)
T ss_dssp CCCCSSSSSSCS
T ss_pred HhhhHhHHHHhH
Confidence 999988877663
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.36 E-value=0.029 Score=45.29 Aligned_cols=64 Identities=6% Similarity=-0.076 Sum_probs=46.7
Q ss_pred HHHHHHH-HHhCCch--hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDS-LMDSGKL--KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~-amerGkY--reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+..|.. ++..|+| .+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|+++. .+|..
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 4556777 6678887 88888888888776543 3566677888888888888888888864 56654
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.34 E-value=0.015 Score=46.97 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHH-HHhcCCh--HHHHHHHHHHh-cCCCH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-QDSLHRP--KEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiA-ydA~GR~--~EAiaLYkkL~-sHP~~ 347 (433)
...+..|..++..|+|.+|+.+|++++..-+.. ..+.+.++.| |...|+. ++|+.+|+++. .+|+-
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 346788999999999999999999999987654 4677889999 8899998 99999999985 57763
No 114
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.34 E-value=0.013 Score=48.20 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
..+..|..++..|+|.+|+.+|++++...+.. ..+.+.++.||...|+.++|+..|+++. .+|+-..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 35666777888888888888888887765432 4466777888888888888888888774 5665443
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.34 E-value=0.012 Score=47.35 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+.+|+++++......... ..+...++.+|...|+.++|+..|++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555677889999999999999999999998765444333 4455889999999999999999998763
No 116
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.34 E-value=0.0098 Score=62.80 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP 331 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~ 331 (433)
.+..+.+..|++-. .++|.. .+..+..|..+++.|+|.+|+++|++|+++-+.. .++...|+.+|...|+.
T Consensus 57 g~~~eA~~~~~~Al--~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 57 GKLQEALMHYKEAI--RISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNI 127 (723)
T ss_dssp TCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCH
Confidence 34455566665543 344443 2335666888888888888888888887765433 45677788888888888
Q ss_pred HHHHHHHHHH-hcCCC
Q 013954 332 KEARIMYEKL-QSHPN 346 (433)
Q Consensus 332 ~EAiaLYkkL-~sHP~ 346 (433)
++|+..|++. +-+|+
T Consensus 128 ~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 128 PEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888888876 35665
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.34 E-value=0.04 Score=53.69 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-. .++|.. .+..+..|..++..|+|.+|+.+|++|++.-+.. ..+...++.||...|
T Consensus 35 ~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 35 GMGDTTAGEMAVQRGL--ALHPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAG 105 (568)
T ss_dssp HHTCHHHHHHHHHHHH--TTSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHH--HhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcC
Confidence 3445667777777655 445543 3446778999999999999999999999986554 567788999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013954 330 RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~ 346 (433)
+.++|+..|++.. .+|+
T Consensus 106 ~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9999999999974 5665
No 118
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.34 E-value=0.013 Score=52.15 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCch----------hhhhhHHHHHHhhcccccchhHH
Q 013954 247 RAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKL----------KEALPFYEKVMNKMVFKSELHGL 316 (433)
Q Consensus 247 kaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkY----------reAV~~lEkA~~~v~~~S~LGGe 316 (433)
..+|..+..+.+..|++-+ .++|..- +.-+..|..+++.|++ .+|+..|++|+++-|... .
T Consensus 11 ~~~r~~~feeA~~~~~~Ai--~l~P~~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~----~ 81 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTY--KSNPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD----E 81 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----H
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCCCCH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH----H
Confidence 4567777778888887665 4555533 3355678888888775 499999999999987644 5
Q ss_pred HHHHHHHHHHhcC-----------ChHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 013954 317 AALQWSICQDSLH-----------RPKEARIMYEKLQ-SHPNALVSKRARQF 356 (433)
Q Consensus 317 aqLwLAiAydA~G-----------R~~EAiaLYkkL~-sHP~~eVrKQAkrL 356 (433)
+...|.+||.+.| +.++|+..|++-. -.|+-..-++|.++
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6678899998875 8999999999975 68877766666543
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.30 E-value=0.039 Score=48.49 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-. .++|... .+...+..|..++..|+|.+|+.+|++++..-+.. ..+...++.||...|
T Consensus 193 ~~~~~~~A~~~~~~a~--~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 SDSLFLEVKELFLAAV--RLDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HHSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTT
T ss_pred hcccHHHHHHHHHHHH--HhCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHcC
Confidence 4455556666665543 3334311 23446778999999999999999999999886543 567888999999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013954 330 RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~ 346 (433)
+.++|+..|++.. .+|+
T Consensus 266 ~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPG 283 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9999999999974 5665
No 120
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.29 E-value=0.017 Score=51.46 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh
Q 013954 248 AAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS 327 (433)
Q Consensus 248 aaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA 327 (433)
..+..+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++.-+.. ..+...++.||..
T Consensus 75 ~~~~g~~~~A~~~~~~al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAI--LQDPGD---AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTN 145 (365)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH--HhCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHc
Confidence 344555666777776554 344543 3446788999999999999999999999986543 5678889999999
Q ss_pred cCChHHHHHHHHHHh-cCCC
Q 013954 328 LHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~-sHP~ 346 (433)
.|+.++|+.+|++.. .+|.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 999999999999985 4554
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.26 E-value=0.011 Score=62.29 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC
Q 013954 251 EERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 251 e~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR 330 (433)
..+..+.++.|++-. .++|..- +..+..|..++..|+|.+|+.+|++|+++-+.. .++...|+.||...|+
T Consensus 22 ~G~~~eAi~~~~kAl--~l~P~~~---~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 22 QGNIEEAVRLYRKAL--EVFPEFA---AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQD 92 (723)
T ss_dssp TTCHHHHHHHHHHHH--HHCSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCC
Confidence 345677788887654 5566643 346778999999999999999999999886543 5678899999999999
Q ss_pred hHHHHHHHHHHh-cCCCH
Q 013954 331 PKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 331 ~~EAiaLYkkL~-sHP~~ 347 (433)
.++|+..|++.. -+|+-
T Consensus 93 ~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999974 57753
No 122
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.23 E-value=0.032 Score=50.69 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPK 332 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~ 332 (433)
+..+.+..|++-. ..+|.. ....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...|+.+
T Consensus 41 ~~~~A~~~~~~~l--~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 41 QLADALSQFHAAV--DGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Confidence 4445555554433 222221 4455666888888888888888888888775443 466777888888888888
Q ss_pred HHHHHHHHHh-cCCCHH
Q 013954 333 EARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 333 EAiaLYkkL~-sHP~~e 348 (433)
+|+..|+++. ..|+..
T Consensus 112 ~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHhcCCCCh
Confidence 8888888875 566544
No 123
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.21 E-value=0.022 Score=55.42 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=44.1
Q ss_pred CchhhhhhHHHHHHhhccccc-----------chhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 291 GKLKEALPFYEKVMNKMVFKS-----------ELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 291 GkYreAV~~lEkA~~~v~~~S-----------~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
|+|.+|+.+|++|+++.+... .+--.+.++++.||-.+|+.++|+..|++.. .+|+
T Consensus 282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 778888888888888877763 3445677888999999999999999998874 4554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.19 E-value=0.037 Score=49.10 Aligned_cols=91 Identities=7% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhcCCCC-CcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHH--HHHHHHHHHHhc
Q 013954 252 ERTRQLLAAYKKSVGLNV-DPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGL--AALQWSICQDSL 328 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~V-dp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGe--aqLwLAiAydA~ 328 (433)
.+..+.+.-|.+-.-..- ++..+....-.+..|...+..|+|.+|+.+|++|++........-++ +...++.||...
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc
Confidence 334455555554433222 22222222223347889999999999999999999965444444344 557799999999
Q ss_pred CChHHHHHHHHHHh
Q 013954 329 HRPKEARIMYEKLQ 342 (433)
Q Consensus 329 GR~~EAiaLYkkL~ 342 (433)
|+.++|+..|++..
T Consensus 169 g~~~~A~~~~~~al 182 (293)
T 3u3w_A 169 GYLKKGIDLFEQIL 182 (293)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999975
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.16 E-value=0.013 Score=48.18 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
.+..|..++..|+|.+|+..|++++..-|... ...+...|+.+|...|+.++|+..|++
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 34445555555555555555555554433211 123444455555555555555555554
No 126
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.16 E-value=0.024 Score=46.66 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|++.+|+.+|+++++..+.. ..+.+.++.+|...|+.++|+.+|++.. .+|.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34566778888888888888888888766443 4567778888888888888888888864 4553
No 127
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.15 E-value=0.048 Score=53.00 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhC--------CchhhhhhHHHHHHhhcccccchhHHHHHHH
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDS--------GKLKEALPFYEKVMNKMVFKSELHGLAALQW 321 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amer--------GkYreAV~~lEkA~~~v~~~S~LGGeaqLwL 321 (433)
+..+..+.+..|++-+ .++|..- ...+..|..++.. |+|.+|+.+|++|+.+-+. ..-...+.+.+
T Consensus 191 ~~g~~~~A~~~~~~al--~~~p~~~---~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~l 264 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAV--QMDVLDG---RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNR 264 (474)
T ss_dssp HHHHHHHHHHHHHHHH--HHCTTCH---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHH
Confidence 4456667777777655 4455532 3456778888888 9999999999999998542 22456788899
Q ss_pred HHHHHhcCChHHHHHHHHHHh-cCCCH-HHHHHHHHHhh
Q 013954 322 SICQDSLHRPKEARIMYEKLQ-SHPNA-LVSKRARQFMF 358 (433)
Q Consensus 322 AiAydA~GR~~EAiaLYkkL~-sHP~~-eVrKQAkrLly 358 (433)
+.||...|+.++|+..|++.. .+|+- .......+++.
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999984 56653 33333333333
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.14 E-value=0.016 Score=49.59 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.+..|++-.. .+| ......+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.||...
T Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQ--AAP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNE 102 (327)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHH--hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHc
Confidence 344455666666654432 222 134455566888888888888888888887765432 45677788888888
Q ss_pred CChHHHHHHHHHHh-cCCC
Q 013954 329 HRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP~ 346 (433)
|+.++|+..|+++. .+|.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHhCCc
Confidence 88888888888874 4444
No 129
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.13 E-value=0.016 Score=52.73 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc---ccc----chhH--------------HHHHHHHHHHHhcCChH
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV---FKS----ELHG--------------LAALQWSICQDSLHRPK 332 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~---~~S----~LGG--------------eaqLwLAiAydA~GR~~ 332 (433)
..+++..+--|+.+|..|.|++|..+|.+|++... .++ .+|. |+..+.|.||-.+++.+
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 34555677789999999999999999999965443 222 1221 68899999999999999
Q ss_pred HHHHHHHHHh-cCCCHHHH
Q 013954 333 EARIMYEKLQ-SHPNALVS 350 (433)
Q Consensus 333 EAiaLYkkL~-sHP~~eVr 350 (433)
+||++-+.+- +.-.+.|-
T Consensus 140 ~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 140 DAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHhcCCchhcCHHHH
Confidence 9999988873 45555543
No 130
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.11 E-value=0.017 Score=52.58 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCC
Q 013954 285 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPN 346 (433)
Q Consensus 285 k~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~ 346 (433)
..+++.|+|.+|+..|+++++..+.. ..+...+++||...||.++|+..|++. ..+|+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 44557799999999999999986543 456667899999999999999999995 56774
No 131
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.08 E-value=0.0078 Score=46.34 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.7
Q ss_pred hCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 289 DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 289 erGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
..|+|.+|+.+|++|++.- ....-...+.+.|+.||-..|+.++|+..|++.. .+|+-
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3689999999999999863 1123346788999999999999999999999985 57764
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.07 E-value=0.028 Score=49.82 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc---ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.++.-....|..++..|+|.+|+.+|++|++.... ....-..+-..++.||-..|+.++|+..|++..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555677899999999999999999999975542 333445577889999999999999999998763
No 133
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.04 E-value=0.02 Score=51.16 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH--HHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSL-HRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~-GR~~EAiaLYkkL~ 342 (433)
..+......|..+...|+|.+|+.+|++|++..+......+ .+...++.+|... |+.++|+..|++..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34556667899999999999999999999998765444443 4556689999995 99999999999874
No 134
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.037 Score=47.38 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc-----chhHHHHHHHHHHHHhcC
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLH 329 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~G 329 (433)
.+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|+++++..+... .-...+...++.||...|
T Consensus 176 ~~A~~~~~~al--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 176 KLAERFFSQAL--SIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHH--TTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 34444454433 333433 23456778889999999999999999988764322 122457778899999999
Q ss_pred ChHHHHHHHHHHh-cCCC
Q 013954 330 RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 330 R~~EAiaLYkkL~-sHP~ 346 (433)
+.++|+..|++.. .+|+
T Consensus 251 ~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhhCcc
Confidence 9999999999875 4554
No 135
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.04 E-value=0.028 Score=55.53 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
-..+...-..|..++..|+|.+|+++++++++. ++.....=|..-..|+..|...|+.+||+.+|++-
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355555666789999999999999999998754 55666666888889999999999999999999875
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.02 E-value=0.017 Score=56.82 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|++|++.-+.. ..+...++.||...|+.++
T Consensus 22 ~~~A~~~~~~Al--~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 22 YENAIKFYSQAI--ELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp HHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHH--HhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Confidence 334444554333 234443 4456788999999999999999999999885533 5677889999999999999
Q ss_pred HHHHHHHHh-cCCCH
Q 013954 334 ARIMYEKLQ-SHPNA 347 (433)
Q Consensus 334 AiaLYkkL~-sHP~~ 347 (433)
|+..|++.. .+|+-
T Consensus 93 A~~~~~~al~~~p~~ 107 (477)
T 1wao_1 93 ALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999974 57754
No 137
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.01 E-value=0.019 Score=50.55 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.+..|++-. .++|. .....+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...
T Consensus 75 ~~~g~~~~A~~~~~~al--~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAV--QQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPD----NQTALMALAVSFTNE 145 (368)
T ss_dssp HHTTCHHHHHHHHHHHH--HSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHH--HhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHc
Confidence 33444555556665444 22232 2344555667777777777777777777665433 234566667777777
Q ss_pred CChHHHHHHHHHHh-cCCC
Q 013954 329 HRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP~ 346 (433)
|+.++|+.+|+++. .+|.
T Consensus 146 g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 77777777777664 3444
No 138
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.99 E-value=0.015 Score=52.28 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.++.|++-. ..+|.. ....+..+..++.+|++.+|+..|+++++.-|.. -++.+.|+.+|...
T Consensus 162 ~~~g~~~~A~~~l~~~~--~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~ 232 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIP--LQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQV 232 (287)
T ss_dssp HHTTCHHHHHHHHTTSC--GGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHhCc--hhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHc
Confidence 45556677777776443 445532 2346667777888888888999999988887654 45778889999999
Q ss_pred CChHHHHHHHHHHh-cCCCH
Q 013954 329 HRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 329 GR~~EAiaLYkkL~-sHP~~ 347 (433)
||.++|+..|+++. .+|+.
T Consensus 233 g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTTG
T ss_pred ccHHHHHHHHHHHHhccccc
Confidence 99999999998885 57764
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.96 E-value=0.018 Score=51.86 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
++..+..|..++..|+|.+|+.+|++|+..-+.. ..+...++.||...|+.++|+..|++.. .+|+-
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3557889999999999999999999999987654 4677889999999999999999999975 57753
No 140
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.88 E-value=0.083 Score=47.49 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+.+|+++++..+...... ..+...++.+|-..|+.++|+..|++..
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4555677889999999999999999999998876533322 3477789999999999999999998874
No 141
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.87 E-value=0.02 Score=48.36 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..+...+..|..++..|++.+|+.+|+++++..+. ....-..+...++.+|...|+.++|+..|++.
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555666677777777777777777777655432 35566666667777777777777777777665
No 142
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.85 E-value=0.039 Score=47.15 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..+..|..++..|+|.+|+.+|+++++.-+. ...+.+.++.||...|+.++|+..|++.. .+|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence 345788999999999999999999999987654 45677889999999999999999999985 5664
No 143
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.83 E-value=0.05 Score=54.22 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..+...-..|..+...|+|.+|+++|++|++. ++....-=|..-..|+..|...|+.+||+.||++-
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444455688999999999999999999765 34444444777788999999999999999999874
No 144
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.82 E-value=0.019 Score=49.10 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+.+|+++++.-+. ...+...++.||...|+.++|+..|++.. .+|+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 4567799999999999999999999988654 45678889999999999999999999985 4664
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.76 E-value=0.024 Score=50.35 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEA-RIMYEKL 341 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EA-iaLYkkL 341 (433)
...+..|..++..|+|.+|+.+|++|++...... .+-+.+-..++.||...|+.++| +..|++-
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677889999999999999999999998764321 22377888899999999999999 6667663
No 146
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.072 Score=48.80 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=63.4
Q ss_pred HHHHHHHHHHh---CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHH
Q 013954 279 KALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRAR 354 (433)
Q Consensus 279 ea~~~Gk~ame---rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAk 354 (433)
..+..|..++. .|++.+|+.+|+++++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|.-.-..++.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45677889999 999999999999999876543 4677889999999999999999999985 688766555555
Q ss_pred HHhhHHH
Q 013954 355 QFMFSFQ 361 (433)
Q Consensus 355 rLlyiLE 361 (433)
.++...+
T Consensus 490 ~~~~~~~ 496 (514)
T 2gw1_A 490 TFAEAAK 496 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.74 E-value=0.071 Score=45.86 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954 279 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 279 ea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 348 (433)
..+..|..++. .|++.+|+.+|++|++.- ...+...|+.+|.. .++.++|+..|++....-+..
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 111 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE 111 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCcc
Confidence 44556777777 888888888888887651 45677778888888 888888888888876554444
No 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.73 E-value=0.051 Score=49.50 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc---hhHHHHHHHHHHHHhc
Q 013954 253 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL 328 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~ 328 (433)
+..+.+..|++-..+--. +.....+...+..|..++..|+|.+|+.+|++|++....... .-+.+...++.||...
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 344555556655433111 223346667788899999999999999999999988765432 2346777899999999
Q ss_pred CChHHHHHHHHHHh
Q 013954 329 HRPKEARIMYEKLQ 342 (433)
Q Consensus 329 GR~~EAiaLYkkL~ 342 (433)
|+.++|+..|++..
T Consensus 198 g~~~~A~~~~~~al 211 (383)
T 3ulq_A 198 KQYEDAISHFQKAY 211 (383)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998864
No 149
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.71 E-value=0.048 Score=49.12 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.|..++..|++.+|+.+|+++++..+.. ..+...++.+|...|+.++|+.+|++.
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555555555544443321 233334444455555555555555444
No 150
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.71 E-value=0.038 Score=51.31 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHHHHHHhC----------CchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 281 LKDGDSLMDS----------GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 281 ~~~Gk~amer----------GkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+..|..++.. |+|.+|+.+|+++++.-+.. ..+.+.++.||...|+.++|+..|++.. .+|...-
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS----EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 3345666666 99999999999999986543 3778999999999999999999999985 5777766
Q ss_pred HHHHHHHhhHHHH
Q 013954 350 SKRARQFMFSFQA 362 (433)
Q Consensus 350 rKQAkrLlyiLEA 362 (433)
..++..+.-...+
T Consensus 498 ~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 498 KLQATTFAEAAKI 510 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 6665555444433
No 151
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.66 E-value=0.0067 Score=59.70 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.++..+..|..++..|+|.+|+++|++|++.-+.. ..+...++.||...|+.++|+..|++.. .||.-
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34455677899999999999999999999986544 6778889999999999999999999985 67753
No 152
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.63 E-value=0.033 Score=56.37 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc----cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV----FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~----~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.++..++....+..+|+|.+|+++|+++++... .....=..+.-.|+.+|...|+.++|+.+|++.
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 455667777888899999999999999987642 122222566777999999999999999988874
No 153
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.63 E-value=0.062 Score=48.82 Aligned_cols=60 Identities=17% Similarity=-0.033 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNAL 348 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~e 348 (433)
.+..|..++..|+|.+|+..|++ + -.-++.+.++.+|...||.++|+..|+++. .+|+.-
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~-----~----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ-----G----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT-----C----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC-----C----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 67778999999999999999987 1 233577778899999999999999999985 577653
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.60 E-value=0.025 Score=52.68 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+.+|++|+++-+.+ ..+.+.++.||...|+.++|+..|++.. .+|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34667999999999999999999999886543 4678899999999999999999999985 4554
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.036 Score=50.45 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh-------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH-------------GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG-------------GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+++|+.++..|+|.+|++.|.++++..+..+... -.+-.+|+.+|...|+.++|+..|+++.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45667777777777777777777776655544322 1345567777777777777777777663
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.58 E-value=0.03 Score=49.41 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+...+..|..++..|+|.+|+.+|++|++...... ..-..+...++.||...|+.++|+..|++..
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566778888899999999999999887765432 2225667778999999999999999988863
No 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.57 E-value=0.033 Score=50.14 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc--hhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE--LHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~--LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+......|..+.. |+|.+|+.+|++|++..+.... .-..+...++.+|...|+.++|+..|++..
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444566777777 9999999999999988765332 235677778999999999999999999875
No 158
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.55 E-value=0.034 Score=50.87 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc--ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF--KSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~--~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+++|++|++.... ....-+.+...++.||...|+.++|+..|++..
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566678899999999999999999999987643 333456778889999999999999999999874
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.53 E-value=0.24 Score=50.18 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh----cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-------c
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNK----MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-------S 343 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~----v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-------s 343 (433)
..+...-..|..+...|+|.+|+++|++|++. ++....-=+..-..||..|...|+.+||+.||++-. .
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45555566688999999999999999999765 344444447788889999999999999999998752 3
Q ss_pred CCCHHHHHHHHHHhhHHH-HHHhhhhcccCCCCcchHHHHHHhhcccccccCcc
Q 013954 344 HPNALVSKRARQFMFSFQ-AMEMMKVRSSSDKNTDYRNFFEAFVEDKTNYPLQE 396 (433)
Q Consensus 344 HP~~eVrKQAkrLlyiLE-Ap~llKv~~~~~~~t~Yd~Yf~af~~~k~~y~~~e 396 (433)
.-|+.|.+.- .+|-..+ .+++. .+. -.-|+.==++..+++.++.-.|
T Consensus 429 ~~Hp~~~~~~-~~l~~~~~e~~~~--~~a---e~~~~~~~~~~~~~~~~~~~~~ 476 (490)
T 3n71_A 429 PSHPITKDLE-AMRMQTEMELRMF--RQN---EFMYHKMREAALNNQPMQVMAE 476 (490)
T ss_dssp TTSHHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHHTC--------
T ss_pred CCChHHHHHH-HHHHHHHHHHHHH--HHH---HHHHHHHHHHHhcCCCCccccC
Confidence 4455665533 3333333 22222 111 0123333455667777776555
No 160
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.51 E-value=0.034 Score=50.66 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc--chhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS--ELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S--~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
..+...+..|..++..|+|.+|+.+|++|++...... ..-+.+...++.||...|+.++|+..|++...
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455677789999999999999999999998765432 33456777899999999999999999998754
No 161
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.50 E-value=0.033 Score=54.29 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 334 (433)
.+.+..|++- +..+|.. .+..+..|..++..|+|.+|+.+|++|++.-+.. ..+.+.++.||...|+.++|
T Consensus 6 ~~A~~~~~~a--l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 6 PRELLQLRAA--VRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence 3444555433 3444543 2446778999999999999999999999986544 56788899999999999999
Q ss_pred HHHHHHHh-cCCCH
Q 013954 335 RIMYEKLQ-SHPNA 347 (433)
Q Consensus 335 iaLYkkL~-sHP~~ 347 (433)
+..|++.. .+|+-
T Consensus 77 ~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 77 AVLLQQASDAAPEH 90 (568)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999985 57753
No 162
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.046 Score=49.25 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
.+..|..+...|++.+|+.+|+++++..+.. ..+...++.+|...|+.++|+.+|++.. .+|+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556888999999999999999999876543 5677889999999999999999999985 5775
No 163
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.30 E-value=0.093 Score=47.97 Aligned_cols=90 Identities=7% Similarity=-0.082 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccc---hhHHHHHHHHHHHHhc
Q 013954 253 RTRQLLAAYKKSVGLNVD-PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSE---LHGLAALQWSICQDSL 328 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vd-p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~---LGGeaqLwLAiAydA~ 328 (433)
+..+.+..|++-..+--. +.....++-.+..|..++..|+|..|+.+|++|++....... .-+.+...++.||...
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 344555556554433211 223456667788899999999999999999999988765432 2356677899999999
Q ss_pred CChHHHHHHHHHHh
Q 013954 329 HRPKEARIMYEKLQ 342 (433)
Q Consensus 329 GR~~EAiaLYkkL~ 342 (433)
|+.++|+..|++..
T Consensus 196 ~~~~~A~~~~~~al 209 (378)
T 3q15_A 196 KHYDKALPHLEAAL 209 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998864
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.25 E-value=0.052 Score=54.12 Aligned_cols=63 Identities=13% Similarity=-0.112 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhc----ccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKM----VFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v----~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..++.++.+-..|+|.+|+++|+++++.. ......=..+--.|+.+|...|+.++|+.||++.
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 45566777778899999999999998754 2222222566677999999999999999999875
No 165
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.96 E-value=0.064 Score=54.94 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
..+..|..++..|+|.+|+..|++|++.-+.. .++...++.||...|+.++|+..|++.. ..|+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 499 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG 499 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 46677888888888888888888888776544 4566777888888888888888888864 4553
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.93 E-value=0.18 Score=43.29 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954 279 KALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 279 ea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 348 (433)
..+..|..++. .|++.+|+.+|++|++.- ...+...|+.+|.. .++.++|+..|++....-+..
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH
Confidence 34455788888 999999999999998761 56788999999999 999999999999987554443
No 167
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.93 E-value=0.11 Score=49.27 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+..|..++..|++.+|+.+|+++++.-+.. ..+...++.+|...|+.++|+.+|+++. .+|+-
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4556888899999999999999999886543 4677889999999999999999999985 57754
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.053 Score=49.93 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=47.4
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccch--h---HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL--H---GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L--G---GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..|...+..|+|++|+++|++|+++....... + -.+-..++.+|...|+.++|+..|++..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 36899999999999999999999876422111 1 1233468999999999999999998863
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.67 E-value=0.14 Score=46.05 Aligned_cols=67 Identities=16% Similarity=0.003 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH--HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG--LAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG--eaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.+...+..|..++..|+|.+|+.+|++|++..+......+ .+...++.+|-..|+.++|+..|++..
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445667789999999999999999999988765444443 345679999999999999999999874
No 170
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.60 E-value=0.055 Score=52.30 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 254 TRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 254 tke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
..+.+..|++-. .++|+.-. .-+..|..++..|+|.+|+..|++|+++-+.+. .+-..++.||...|+.++
T Consensus 148 ~~eAl~~~~~al--~l~P~~~~---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 148 LHEEMNYITAII--EEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHHHHH--HHCTTCHH---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHH--HHCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHH
Confidence 444455554333 34444322 245567788888888888888888888766553 455678888999999999
Q ss_pred HHHHHHHHh-cCCCH
Q 013954 334 ARIMYEKLQ-SHPNA 347 (433)
Q Consensus 334 AiaLYkkL~-sHP~~ 347 (433)
|+..|+++. .+|+-
T Consensus 219 Al~~~~~al~l~P~~ 233 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999998875 56653
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.57 E-value=0.11 Score=46.76 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccccc----chhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS----ELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S----~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..+...+..|..++..|+|.+|+.+|+++++...... .....+...++.+|-..|+.++|+.+|++..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444566789999999999999999999998775322 3345667789999999999999999999864
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.50 E-value=0.15 Score=43.56 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC----ChHHHHHHHHHHhcCCCHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH----RPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G----R~~EAiaLYkkL~sHP~~e 348 (433)
+..+..|..++..|++.+|+.+|++|.+. =...+...|+++|.. + +.++|+..|++....-++.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~ 86 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKS 86 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHH
Confidence 44667788888888888888888888664 135777788888887 6 7888888888875444433
No 173
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.43 E-value=0.068 Score=54.74 Aligned_cols=82 Identities=7% Similarity=0.007 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 249 AKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 249 aRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+..+.++.|++-. .++|.. .+..+..|..++..|+|.+|+..|++|+++-+... .+.+.++.||...
T Consensus 444 ~~~g~~~~A~~~~~~al--~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 444 LDLGDVAKATRKLDDLA--ERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELA 514 (681)
T ss_dssp HHHTCHHHHHHHHHHHH--HHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHh--ccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc
Confidence 34456677777777655 344443 33456677788888888888888888877766543 2233344444444
Q ss_pred CChHHHHHHHHH
Q 013954 329 HRPKEARIMYEK 340 (433)
Q Consensus 329 GR~~EAiaLYkk 340 (433)
|+.++ +..|++
T Consensus 515 g~~~~-~~~~~~ 525 (681)
T 2pzi_A 515 GNTDE-HKFYQT 525 (681)
T ss_dssp TCCCT-TCHHHH
T ss_pred CChHH-HHHHHH
Confidence 44444 444444
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.94 E-value=0.07 Score=51.16 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHP 345 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP 345 (433)
..|-.|..++..|+|.+|+.+|+++.... ...+...+.++|.+||..+|+.++|+..|++...-|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 56888999999999999999999765433 122457899999999999999999999999996433
No 175
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.81 E-value=0.35 Score=43.23 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954 255 RQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 255 ke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 334 (433)
.+.+..|++-+-. ++|.... --+..|..+...|++.+|...|++|++.-+.... .+-+.++.++...|+.++|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNML---LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHH
Confidence 4555666554420 3454332 2455677888899999999999999986543322 2677788888999999999
Q ss_pred HHHHHHHhc
Q 013954 335 RIMYEKLQS 343 (433)
Q Consensus 335 iaLYkkL~s 343 (433)
+.+|++...
T Consensus 154 ~~~~~~a~~ 162 (308)
T 2ond_A 154 RMIFKKARE 162 (308)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999864
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.55 E-value=0.2 Score=48.34 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCc-hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 279 KALKDGDSLMDSGK-LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 279 ea~~~Gk~amerGk-YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.-+..|..++..|+ |.+|+.+|++|+.+-+.. -.+-..++.||..+|+.++|+..|++.. ..|.-
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 34556899999997 999999999999887654 3456678999999999999999999985 45543
No 177
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.41 E-value=1.2 Score=39.87 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHh---CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL 328 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~ame---rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~ 328 (433)
.+..+.+..|++-.. ++|..... -+ +...++ .|++.+|+..|++|++..+.. ..+-+.++..+...
T Consensus 148 ~~~~~A~~~~~~a~~--~~p~~~~~---~~--~~a~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 148 EGIKSGRMIFKKARE--DARTRHHV---YV--TAALMEYYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHL 216 (308)
T ss_dssp HCHHHHHHHHHHHHT--STTCCTHH---HH--HHHHHHHHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHh--cCCCCHHH---HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHC
Confidence 344455566665543 33432111 22 333343 699999999999999987753 45567788889999
Q ss_pred CChHHHHHHHHHHhc
Q 013954 329 HRPKEARIMYEKLQS 343 (433)
Q Consensus 329 GR~~EAiaLYkkL~s 343 (433)
|+.++|+++|++...
T Consensus 217 g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 217 NEDNNTRVLFERVLT 231 (308)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999976
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.23 Score=45.08 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC------------cchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccch
Q 013954 246 ARAAKEERTRQLLAAYKKSVGLNVD------------PKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 313 (433)
Q Consensus 246 EkaaRe~rtke~LaaYrk~~Gl~Vd------------p~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L 313 (433)
++..+..+..+.+..|.+-.-++-+ .......+..+..|..+++.|+|.+|+++|+.++.....-..-
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456667788888888764322211 1223334446678999999999999999999887655432211
Q ss_pred ----------h--------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 314 ----------H--------------------------------GLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 314 ----------G--------------------------------GeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
| ..+.+.|+.+|...|+.++|+.+++++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 1 12344577778888888888888888873
No 179
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.16 E-value=0.25 Score=46.82 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=29.4
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhccc---ccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVF---KSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~---~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
|..++..|++.+|+.+|+++++..+. .......+...++.+|-..|+.++|+.+|+++
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555555555555555555554321 11111344445555555566666666666554
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.07 E-value=0.48 Score=38.43 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCH
Q 013954 278 EKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNA 347 (433)
Q Consensus 278 eea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~ 347 (433)
...+..|..++. .+++.+|+.+|++|.+. =...++.+|+++|.. ..+.++|+..|++-..+-+.
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 345566666666 67788888888887654 135677778888877 77788888888777654443
No 181
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.78 E-value=0.78 Score=44.53 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=59.7
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc--------CCCHHHHHHH
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS--------HPNALVSKRA 353 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s--------HP~~eVrKQA 353 (433)
+....++..|++.+|+..++.++..-|..-++ ..+|..||-..||+.+|+..|+++.. -|.++++.--
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~----~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPL----WTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH----HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34677889999999999999998888766554 45678899999999999999999864 5888888877
Q ss_pred HHHh
Q 013954 354 RQFM 357 (433)
Q Consensus 354 krLl 357 (433)
++|+
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.19 E-value=0.46 Score=33.39 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+.+..|++-. .++|.. ....+..|..++..|+|.+|+.+|+++++.-+.. ..+...++.+|...|
T Consensus 24 ~~~~A~~~~~~a~--~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 24 DYDEAIEYYQKAL--ELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHH--HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH--hcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence 4445555565444 233433 2346778999999999999999999999986543 456677777776554
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.16 E-value=0.27 Score=37.06 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCH
Q 013954 294 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 294 reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~ 347 (433)
.+|+.+|++++..-+.. ..+.+.++.+|...|+.++|+..|++.. .+|..
T Consensus 2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 57899999999876644 4678889999999999999999999985 56653
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=92.13 E-value=2 Score=36.55 Aligned_cols=68 Identities=7% Similarity=-0.099 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 013954 277 CEKALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-H-----RPKEARIMYEKLQSHPN 346 (433)
Q Consensus 277 ~eea~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-G-----R~~EAiaLYkkL~sHP~ 346 (433)
....+..|..++. .+++.+|+.+|++|.++ +. ...++.+|+.+|..- | +.++|+..|++-..+-+
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~----~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR----TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC----TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 4556778888888 88999999999999877 22 234789999999754 3 89999999999875555
Q ss_pred HHH
Q 013954 347 ALV 349 (433)
Q Consensus 347 ~eV 349 (433)
.+-
T Consensus 200 ~~A 202 (212)
T 3rjv_A 200 DTG 202 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 185
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.11 E-value=0.71 Score=36.27 Aligned_cols=64 Identities=16% Similarity=-0.005 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCc---hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCC
Q 013954 279 KALKDGDSLMDSGK---LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 279 ea~~~Gk~amerGk---YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~ 346 (433)
-.+..|..+|-.+. ..+|..+|++|+..=+.+ ..+.+.|+..+-..|+.++||..|+++. ..|.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566777764444 899999999999977544 5678888999999999999999999985 5666
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.98 E-value=0.16 Score=37.01 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G 329 (433)
+..+..+.+..|++-+ .++|.... ...+..|..++..|+|.+|+.+|++|+.+-+...... .+ +
T Consensus 12 ~~~~~~~A~~~~~~al--~~~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~--------~ 75 (99)
T 2kc7_A 12 NQGDIENALQALEEFL--QTEPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ----AR--------K 75 (99)
T ss_dssp HHTCHHHHHHHHHHHH--HHCSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH----HH--------H
T ss_pred HcCCHHHHHHHHHHHH--HHCCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----HH--------H
Confidence 3445566666666544 34454322 1467889999999999999999999999887665443 11 5
Q ss_pred ChHHHHHHHHHHh
Q 013954 330 RPKEARIMYEKLQ 342 (433)
Q Consensus 330 R~~EAiaLYkkL~ 342 (433)
+..+|+..|+++.
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 6677777777653
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.77 E-value=0.55 Score=43.17 Aligned_cols=71 Identities=11% Similarity=-0.030 Sum_probs=45.5
Q ss_pred HHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHHHHHhhH
Q 013954 285 DSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRARQFMFS 359 (433)
Q Consensus 285 k~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQAkrLlyi 359 (433)
......|++.+|+.+|++|+..-+.. ..+...++.+|...|+.++|+..|++.. .||+-..--...-++|.
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 33445567777777777777765433 3566778999999999999999999974 78875443333334443
No 188
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.46 E-value=0.87 Score=35.76 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhccc
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVF 309 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~ 309 (433)
.+-.|..+|..|+|++|+.+|+++++..+.
T Consensus 46 ~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 46 LSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455699999999999999999999998877
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.78 E-value=2 Score=34.80 Aligned_cols=60 Identities=8% Similarity=-0.063 Sum_probs=51.0
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 348 (433)
.|..++..+.+.+|+.+|++|.+. =...++..|+++|.. ..+.++|+..|++-...-++.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHH
Confidence 788888888899999999999876 246899999999998 899999999999987554443
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.45 E-value=2.3 Score=40.95 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=47.0
Q ss_pred HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHH
Q 013954 288 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 288 merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eV 349 (433)
+..|++.+|...||+|++..|.. ..+-+.++..+...|+.++|+.+|++.. .||+.++
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~----~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l 81 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSS----GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence 67899999999999999988755 3344446777778899999999999985 6898664
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.84 E-value=0.93 Score=43.62 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=40.2
Q ss_pred CCchh-------hhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 290 SGKLK-------EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 290 rGkYr-------eAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
.|++. +|+..|++|++.+.++ ...+-+.++..++..|+.++|+.+|+++..
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 78887 8999999999743333 245666788889999999999999999864
No 192
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.13 E-value=3.6 Score=39.15 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhc
Q 013954 290 SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQS 343 (433)
Q Consensus 290 rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~s 343 (433)
.+++.+|+.+|++|.+.- .-.+..+|+.+|.. .++.++|+.+|++...
T Consensus 200 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 455555555555554431 12445555555554 5555555555555543
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=87.05 E-value=2.1 Score=40.66 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=48.9
Q ss_pred HHHHHHHHHh----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCHH
Q 013954 280 ALKDGDSLMD----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS----LHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 280 a~~~Gk~ame----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA----~GR~~EAiaLYkkL~sHP~~e 348 (433)
.+..|..++. .+++.+|+.+|++|.+. =...++..|+.+|.. .++.++|+..|++....-+..
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 148 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS 148 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 4555777888 88999999999998764 145788889999988 788999999999886544443
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=86.14 E-value=3.3 Score=40.22 Aligned_cols=65 Identities=9% Similarity=-0.058 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
..+-.|..++..|+|.+|+..|+++++.-+ +.-.=++.+-++.+|-..||.+.|+.++++++ .+|
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 356779999999999999999999877554 24555788889999999999999999999996 577
No 195
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=84.67 E-value=1.3 Score=45.43 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH---------------------HHHHHHHHHHHhcCChHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG---------------------LAALQWSICQDSLHRPKEARIM 337 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG---------------------eaqLwLAiAydA~GR~~EAiaL 337 (433)
.-...+..++.-|+|.+||+.|++|..--.-+.-+.+ +-...++-+|+..|+++|||.+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 4456688999999999999999998322111111111 1122456789999999999999
Q ss_pred HHHHh
Q 013954 338 YEKLQ 342 (433)
Q Consensus 338 YkkL~ 342 (433)
+++--
T Consensus 230 Le~aL 234 (449)
T 1b89_A 230 LEAAL 234 (449)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98863
No 196
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.42 E-value=5.7 Score=35.19 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCC---chhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCCCHHHHHHH
Q 013954 278 EKALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHPNALVSKRA 353 (433)
Q Consensus 278 eea~~~Gk~amerG---kYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP~~eVrKQA 353 (433)
+..|+-|-.+.... .+++++.+||.++..-.+ .-.=+.-..||++|=.+|+.++|+..+++|- ..|+- .||
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n---~QA 107 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQA 107 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHH
Confidence 45677888888877 888999999999886511 1345788999999999999999999999994 78854 467
Q ss_pred HHHhhHHH
Q 013954 354 RQFMFSFQ 361 (433)
Q Consensus 354 krLlyiLE 361 (433)
+.|..-++
T Consensus 108 ~~Lk~~ie 115 (152)
T 1pc2_A 108 KELERLID 115 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766665
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=83.86 E-value=2.6 Score=42.25 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHHHhh
Q 013954 286 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQFMF 358 (433)
Q Consensus 286 ~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkrLly 358 (433)
.++-.|++.+|+.++++|+.+= ++- .+-+.++.+|...|+.++|++.|++- .-.|...+-.-++.|.|
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln--~s~---~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE--MSW---LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHhCCCHHHHHHHHHHHHhcC--CCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 3455799999999999999994 342 34467889999999999999999776 57999887665555544
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.66 E-value=1.9 Score=32.48 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG 315 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG 315 (433)
+..+.+..|++-+ .++|..-. ..+..|..++..|++.+|+..|++|+++.+.....+-
T Consensus 22 ~~~~A~~~~~~al--~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 22 NASRALALFEELV--ETDPDYVG---TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp CHHHHHHHHHHHH--HHSTTCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHH--HhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 3445555555444 34454322 4677899999999999999999999988765544443
No 199
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.62 E-value=3.8 Score=39.69 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhH-------------------HHHHHHHHHHHhcCChHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHG-------------------LAALQWSICQDSLHRPKEAR 335 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGG-------------------eaqLwLAiAydA~GR~~EAi 335 (433)
.+++..+..|..+...|...+|+..|+.|+.+.... -|.| .+...++-++-+.|++.+|+
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 677888899999999999999999999998876321 2222 23345677788999999999
Q ss_pred HHHHHHh-cCCCHH
Q 013954 336 IMYEKLQ-SHPNAL 348 (433)
Q Consensus 336 aLYkkL~-sHP~~e 348 (433)
..+++|. .||..+
T Consensus 192 ~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 192 AELEALTFEHPYRE 205 (388)
T ss_dssp HHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 8888885 799877
No 200
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=82.12 E-value=4.1 Score=36.70 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc----cchhHHHH-HHHHHHHHhcCChHHHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK----SELHGLAA-LQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~----S~LGGeaq-LwLAiAydA~GR~~EAiaLYkkL 341 (433)
..-..+|..|..+|+.|+|-+|=+.||.+-...+.. .-+.|.+| +--|+-+-..|+..=|..|+++-
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345568999999999999999999999997666443 56889999 99999999999999999999864
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=81.81 E-value=1.4 Score=45.18 Aligned_cols=52 Identities=17% Similarity=0.023 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
.-...|..+++.|+|.+|+.+|.++ .-..-||.||-.+|+.++|+..|++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 4567799999999999999999987 244557899999999999999999983
No 202
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=80.71 E-value=2.3 Score=34.76 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcc--cccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMV--FKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~--~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.|..|..+|+.|+|-+|=+.||.+-...+ .+.-+.|.+|+--|.-+-.-|+. |..|+++-
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 47889999999999999999999976663 24458899998888877677777 88887764
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=77.53 E-value=4.4 Score=39.01 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=40.2
Q ss_pred HHHHHHH-H--HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC-----ChHHHHHHHHHHh
Q 013954 280 ALKDGDS-L--MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH-----RPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~-a--merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G-----R~~EAiaLYkkL~ 342 (433)
.+..|.. + ...|++.+|+.+|++|.+.= ...++.+|+.+|. .| +.++|+..|++-.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 3444555 3 46788888888888877431 4677888888887 66 7888888888877
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=77.13 E-value=4.8 Score=47.40 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc---cchh------------
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK---SELH------------ 314 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~---S~LG------------ 314 (433)
+.-+.++.+.+|.+. + -...-++.|..+...|+|.+|+++|+.|....... |.+|
T Consensus 1117 ~~G~~kEAIdsYiKA-------d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA-------D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred hCCCHHHHHHHHHhc-------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence 344566777777442 1 12234557889999999999999998887665221 1111
Q ss_pred --------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 315 --------GLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 315 --------GeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
-.....++.+|+..|+.++|+.+|.+.
T Consensus 1187 e~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1187 EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 112345888888888888888888885
No 205
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=76.26 E-value=5.9 Score=33.82 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=39.5
Q ss_pred HHHHHhhcCCCCCcc---hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh
Q 013954 258 LAAYKKSVGLNVDPK---LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK 306 (433)
Q Consensus 258 LaaYrk~~Gl~Vdp~---~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~ 306 (433)
.+.|-++-||.+..- .+..++..+..|+.+|.-|.|.+|+.+||+|..+
T Consensus 31 F~~YV~kn~Lkel~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 31 FENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 345667778877654 2366778899999999999999999999999754
No 206
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.48 E-value=7.2 Score=35.42 Aligned_cols=61 Identities=5% Similarity=-0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhccccc-----chhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKS-----ELHGLAALQWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S-----~LGGeaqLwLAiAydA~GR~~EAiaLYkk 340 (433)
.++..+.+++.|.|+.|+.....++.....+- .+.-++..|+|.+|=.-+.+..|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 57889999999999999999999777664333 35568999999999999999999999998
No 207
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=74.88 E-value=8.7 Score=37.28 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=56.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchh-hhhhHHHHHHhhcccccchhHHHHHH
Q 013954 242 ETAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQ 320 (433)
Q Consensus 242 EteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYr-eAV~~lEkA~~~v~~~S~LGGeaqLw 320 (433)
.|+|+.+++..+.++++++|+. +.+.-...+..|.|. +|+.++++++..-|-... |=..
T Consensus 10 ~~~~~~~~~~~~~~~ki~~y~~----------------~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~ 69 (331)
T 3dss_A 10 TSEEQAEAKRLEREQKLKLYQS----------------ATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNC 69 (331)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHH
T ss_pred CcHhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHH
Confidence 4777788888888899999973 222233345678888 799999999987765432 1122
Q ss_pred HHHHHHhcCC----------hHHHHHHHHHHh-cCCC
Q 013954 321 WSICQDSLHR----------PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 321 LAiAydA~GR----------~~EAiaLYkkL~-sHP~ 346 (433)
-..+++++++ .++++.+|.++. .||.
T Consensus 70 Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 70 RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 3344555555 578999999884 6773
No 208
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.77 E-value=5.2 Score=42.05 Aligned_cols=74 Identities=8% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHH
Q 013954 281 LKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFMFSF 360 (433)
Q Consensus 281 ~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiL 360 (433)
...+ .++..|++..|..+|+..-. ...--...+.|++-++++.|+.++|..+|++|..+.+ -|++
T Consensus 290 ~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~----------fYg~ 354 (618)
T 1qsa_A 290 RRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRG----------FYPM 354 (618)
T ss_dssp HHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS----------HHHH
T ss_pred HHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------hHHH
Confidence 3344 46778999999999866433 2233578899999999999999999999999986532 4888
Q ss_pred HHHHhhhhc
Q 013954 361 QAMEMMKVR 369 (433)
Q Consensus 361 EAp~llKv~ 369 (433)
=|.+.+...
T Consensus 355 lAa~~Lg~~ 363 (618)
T 1qsa_A 355 VAAQRIGEE 363 (618)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 888777644
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=73.94 E-value=18 Score=34.81 Aligned_cols=61 Identities=11% Similarity=-0.046 Sum_probs=46.7
Q ss_pred HHHHHHHHhC----CchhhhhhHHHHHHhhcccccchhHHHHHHHHHH-H--HhcCChHHHHHHHHHHhcCCCHH
Q 013954 281 LKDGDSLMDS----GKLKEALPFYEKVMNKMVFKSELHGLAALQWSIC-Q--DSLHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 281 ~~~Gk~amer----GkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiA-y--dA~GR~~EAiaLYkkL~sHP~~e 348 (433)
+..|..+... +++.+|+.+|++|. + =...+...|+.+ | ...++.++|+..|++....-++.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 4556555433 69999999999987 1 235788899998 6 67999999999999987555544
No 210
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=70.61 E-value=10 Score=36.78 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHH--hCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh-cCC
Q 013954 276 ECEKALKDGDSLM--DSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 276 e~eea~~~Gk~am--erGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~-sHP 345 (433)
.....+.++...+ +.++|++|+..|+.+.+..+..+ ...+.|. |+...|+.+||....++|. .||
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~----~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK----TQLGLLN-LHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH----HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc----cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcc
Confidence 3334455563344 44499999999999887765311 1233344 9999999999999999875 454
No 211
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.38 E-value=9.4 Score=33.22 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 354 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 354 (433)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-..++-.---.|.+.-.++...=|.
T Consensus 39 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 108 (116)
T 2p58_C 39 EEAVQLIR-LSSLMNRGDYASALQQGNKLA---------YPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRIQTFVN 108 (116)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHHHHTTSC---------CGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555554 568999999999999888632 23456799999999999888887777888888887766555
Q ss_pred HHh
Q 013954 355 QFM 357 (433)
Q Consensus 355 rLl 357 (433)
-|+
T Consensus 109 g~r 111 (116)
T 2p58_C 109 GMR 111 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=69.70 E-value=2.8 Score=37.16 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=41.6
Q ss_pred CchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCCh----------HHHHHHHHHHh-cCCCH
Q 013954 291 GKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRP----------KEARIMYEKLQ-SHPNA 347 (433)
Q Consensus 291 GkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~----------~EAiaLYkkL~-sHP~~ 347 (433)
++|.+|++.|++|+++-|... ++.++|..||-..++. ++||..|++-. --|+.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 568899999999999887644 5667788888888775 59999999975 46653
No 213
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.21 E-value=9.2 Score=33.23 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHH
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRAR 354 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAk 354 (433)
++|-.++. -..+|+||+|.+|+.+++... --.+.-|+|.|-=.+|-..++-.---.|.+.-.++...=|.
T Consensus 38 ~E~v~lIR-~sSLmNrG~Yq~Al~l~~~~c---------~pdlepw~ALce~rlGl~s~le~rL~~la~sg~p~~q~Fa~ 107 (115)
T 2uwj_G 38 DEAARLIR-ISSLANQGRYQEALAFAHGNP---------WPALEPWFALCEWHLGLGAALDRRLAGLGGSSDPALADFAA 107 (115)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHGGGTTCC---------CGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHH-HHHHHcchhHHHHHHhcCCCC---------CchHHHHHHHHHHhcccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555554 568999999999999887632 23456799999999999888887777888888887766555
Q ss_pred HHh
Q 013954 355 QFM 357 (433)
Q Consensus 355 rLl 357 (433)
-|+
T Consensus 108 g~r 110 (115)
T 2uwj_G 108 GMR 110 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.84 E-value=7.4 Score=45.86 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 279 ea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
..+..|+.+++.|+|.+|+.+|.+|- --.-++.||.-+|+.++|+..|++-
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~------------ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh------------HHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45678999999999999999999972 4445899999999999999999876
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=62.78 E-value=13 Score=39.14 Aligned_cols=56 Identities=5% Similarity=-0.079 Sum_probs=45.7
Q ss_pred HHHHHhCCchhhhh-hHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 284 GDSLMDSGKLKEAL-PFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 284 Gk~amerGkYreAV-~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
++-....|...+|+ ..|+.|+..+|... .+-+.+|..++..|+.++|..+|+++..
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55566788999998 99999999887531 3345578889999999999999999974
No 216
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=61.76 E-value=21 Score=30.63 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc-----cccchhHHHHHHHHHHHHhcCC
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV-----FKSELHGLAALQWSICQDSLHR 330 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~-----~~S~LGGeaqLwLAiAydA~GR 330 (433)
+.+.+-..+..++.+|++|++.+.-.++-+|.+.+. .+-+-||++.-.|.--|+-+.|
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~ 94 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIK 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 347788899999999999999999999999987653 3445689999999988886543
No 217
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.91 E-value=27 Score=37.40 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHhhc--CCCCCcchHHHHHHHHHHHHHH--HhCCchhhhhhHHHHHHhhcccc
Q 013954 255 RQLLAAYKKSV--GLNVDPKLKSECEKALKDGDSL--MDSGKLKEALPFYEKVMNKMVFK 310 (433)
Q Consensus 255 ke~LaaYrk~~--Gl~Vdp~~k~e~eea~~~Gk~a--merGkYreAV~~lEkA~~~v~~~ 310 (433)
++.+..|+..- -..|+++.++.|...++..... +..|+|.+|++.+++ +..+|..
T Consensus 512 ~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 512 RRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 44555565542 2267888999999888886655 999999999999998 6677766
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=59.65 E-value=28 Score=32.96 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhCCchh-hhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC--ChHHHHHHHHHHh-cCCCHHH
Q 013954 275 SECEKALKDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQ-SHPNALV 349 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYr-eAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~-sHP~~eV 349 (433)
++..+++..-...+..|.|. +|+..+++|+.+-|-... +=..-..++.++| +.++|+.+|.++. .||.--.
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~ 104 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ 104 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH
Confidence 45556777777788888885 899999999988866532 3344577889999 9999999999985 6775443
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=57.82 E-value=9.7 Score=37.71 Aligned_cols=61 Identities=15% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhh-----ccc---c----cchhHHHHHH------HHHHHHhcCChHHHHHHHHHHhc
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNK-----MVF---K----SELHGLAALQ------WSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~-----v~~---~----S~LGGeaqLw------LAiAydA~GR~~EAiaLYkkL~s 343 (433)
+.|+.++..|++..|...|.++-+. +-. + .++ +++.+. -..||-.+|+.++|+.||.++.+
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~-~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTL-AKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHH-HHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4599999999999999999986221 100 0 011 111111 23466678999999999988764
No 220
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=57.61 E-value=13 Score=31.99 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCch-hhh---hhHHHHHHhhc-----ccccchhHHHHHHHHHHHHhcC
Q 013954 274 KSECEKALKDGDSLMDSGKL-KEA---LPFYEKVMNKM-----VFKSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkY-reA---V~~lEkA~~~v-----~~~S~LGGeaqLwLAiAydA~G 329 (433)
.+.+-..+..++.+|++|++ .+. -.++-+|.+.+ ..+-+-||++.-.|.--|+-+.
T Consensus 26 ydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~ 90 (130)
T 1orj_A 26 YDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIIL 90 (130)
T ss_dssp HHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Confidence 36788899999999999999 888 88888887766 4455678999999988887543
No 221
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.13 E-value=15 Score=29.32 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 314 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG 314 (433)
.-+-+..+.|..++.+|.+.+|+.+|-+|+.-++....|=
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3466788999999999999999999999998887766553
No 222
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=53.50 E-value=1.5e+02 Score=27.97 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHhCC--chhhhhhHHHHHHhhcccccchh---HHHHHHHHHHHHhc---CChHHHHHHHHHHh-cCC
Q 013954 283 DGDSLMDSG--KLKEALPFYEKVMNKMVFKSELH---GLAALQWSICQDSL---HRPKEARIMYEKLQ-SHP 345 (433)
Q Consensus 283 ~Gk~amerG--kYreAV~~lEkA~~~v~~~S~LG---GeaqLwLAiAydA~---GR~~EAiaLYkkL~-sHP 345 (433)
.|..+..-| .|.+++.++++++..-|-...+= |.+-.. ..+.+ ++.++++.+|.++. .||
T Consensus 73 R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~---~~~~l~~~~~~~~EL~~~~~~l~~~p 141 (306)
T 3dra_A 73 RFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ---IMELNNNDFDPYREFDILEAMLSSDP 141 (306)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH---HHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH---HHHhccccCCHHHHHHHHHHHHHhCC
Confidence 477788888 99999999999988665544221 111111 11333 67777777777763 565
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=52.15 E-value=16 Score=28.11 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccch
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSEL 313 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~L 313 (433)
.+..|..++..|++..|+.++++|+.+-|.....
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3667999999999999999999999988777554
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=51.62 E-value=57 Score=28.06 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCchhh---hhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHH
Q 013954 279 KALKDGDSLMDSGKLKE---ALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRAR 354 (433)
Q Consensus 279 ea~~~Gk~amerGkYre---AV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAk 354 (433)
..|.-+-.+.....-.+ +|.+||..+..-.+ .---+.-..||++|=.+|+.++|+..|+.| +.+|+- .||.
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~QA~ 111 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQAK 111 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HHHH
Confidence 34555666666665544 99999997775311 133477899999999999999999999999 578864 4788
Q ss_pred HHhhHHH
Q 013954 355 QFMFSFQ 361 (433)
Q Consensus 355 rLlyiLE 361 (433)
.|..-.+
T Consensus 112 ~Lk~~i~ 118 (126)
T 1nzn_A 112 ELERLID 118 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 225
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=50.41 E-value=7.7 Score=39.51 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=43.4
Q ss_pred HHHHHHHhCCchh-hhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC----------hHHHHHHHHHHh-cCCC
Q 013954 282 KDGDSLMDSGKLK-EALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR----------PKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 282 ~~Gk~amerGkYr-eAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR----------~~EAiaLYkkL~-sHP~ 346 (433)
..-...+..|.|. +|+..+++|+..-|-.. .+-..-..|+..+|+ .++|+..|.++. .||.
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK 105 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 105 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 3334456667765 66999999998876553 223335677888888 899999999985 6774
No 226
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.69 E-value=17 Score=30.38 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH 314 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG 314 (433)
.-+-+..+.|..++.+|.+.+|+.||-+|+..++....|=
T Consensus 18 ~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 18 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4466788999999999999999999999988877666554
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=48.09 E-value=1e+02 Score=31.24 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=42.9
Q ss_pred HHHHHhCCc----------hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcC--ChHHHHHHHHHHh-cCCC
Q 013954 284 GDSLMDSGK----------LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLH--RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 284 Gk~amerGk----------YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~G--R~~EAiaLYkkL~-sHP~ 346 (433)
|..+..-|+ |.+++.++++|+..=+-+.. +=..-..+++.+| +.++|++.|.++. .||.
T Consensus 70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~----aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 666666666 99999999999876554332 2222466788899 6699999999984 6764
No 228
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=48.08 E-value=27 Score=30.58 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCCCCcc-----hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhccc-ccch--hHHHHHHHHHHHHhc
Q 013954 257 LLAAYKKSVGLNVDPK-----LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVF-KSEL--HGLAALQWSICQDSL 328 (433)
Q Consensus 257 ~LaaYrk~~Gl~Vdp~-----~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~-~S~L--GGeaqLwLAiAydA~ 328 (433)
..++|++..=.+-+|. +.+.|-..+..++.+|++|++.++-.++-+|.+.+.- .+.| -|++.-.|.--|+-+
T Consensus 8 ~~~aY~~~~v~tAsP~~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~egeiA~nL~~LY~y~ 87 (145)
T 1vh6_A 8 PYTAYQQNSVNTATPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRNIELSASMGAMYDYM 87 (145)
T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 3567877442333454 2377888999999999999999999999999887721 1111 167766666666644
No 229
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=47.67 E-value=42 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHhcC-CCHHHHHHHHHHhhHHHHH
Q 013954 339 EKLQSH-PNALVSKRARQFMFSFQAM 363 (433)
Q Consensus 339 kkL~sH-P~~eVrKQAkrLlyiLEAp 363 (433)
.+|++| |+.+|++.|+.|+-.+...
T Consensus 60 n~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 60 NGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 357765 9999999999999999876
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=45.44 E-value=56 Score=28.74 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=63.0
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHHHHh---CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHH
Q 013954 259 AAYKKSVGLNVDPKLKSECEKALKDGDSLMD---SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEAR 335 (433)
Q Consensus 259 aaYrk~~Gl~Vdp~~k~e~eea~~~Gk~ame---rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAi 335 (433)
++|-+..|-.|.+.++ |.-+-.+.. +...+.+|..||.....- ...--+--..||++|=.+|+.++|+
T Consensus 28 ~qy~~E~~~~vs~qt~------F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 28 QQVVSEGGPTATIQSR------FNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp HHHHHTTGGGSCHHHH------HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCChhhH------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHH
Confidence 4454433555555433 333333443 345678999999877643 2335678889999999999999999
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHhhHHH
Q 013954 336 IMYEKLQ-SHPNALVSKRARQFMFSFQ 361 (433)
Q Consensus 336 aLYkkL~-sHP~~eVrKQAkrLlyiLE 361 (433)
..|+.|- .+|+- .||+.|..-.+
T Consensus 99 ~y~d~lL~~eP~N---~QA~~Lk~~Ie 122 (134)
T 3o48_A 99 RYVDTLFEHERNN---KQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHTTCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC---HHHHHHHHHHH
Confidence 9999995 67764 47888877665
No 231
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=43.87 E-value=20 Score=28.86 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 273 LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 273 ~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
...++++-|+.++.+++.|.|+.|+-....|+...
T Consensus 8 ~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~a 42 (126)
T 2hsb_A 8 RIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHA 42 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45788999999999999999998887777766554
No 232
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=43.78 E-value=50 Score=31.55 Aligned_cols=71 Identities=14% Similarity=0.013 Sum_probs=45.6
Q ss_pred HHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 013954 283 DGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 357 (433)
Q Consensus 283 ~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 357 (433)
.|..-|++|.+++=+..+++-+..+ +-|=.-..+.|..+=+....++.+.|...|-.|+.-+||--|-.|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~gf~~~~~~a~~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lL 95 (240)
T 3l9t_A 25 TGGQQMGRGSMKQYVARLEKDFSLI----EHGFKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLF 95 (240)
T ss_dssp ---------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4777899999999898888866655 3333455566666666666899999999999999999998887754
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=40.47 E-value=48 Score=33.10 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=48.5
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcccc--cchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVFK--SELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~~--S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
+.|..++++|+|.+|+..+.+..+.|..- ..+==|+.+--.-.|-+.++...|.++|.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77999999999999999999998887541 12333566666667788999999999998874
No 234
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.82 E-value=32 Score=27.55 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+.+.+..+..+=..|+|.+|+.+|..|++.+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34455666666777888888888888877654
No 235
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.13 E-value=27 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 013954 320 QWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkk 340 (433)
..|+-.|..|+.+||+.+|++
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 456778999999999999975
No 236
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=36.95 E-value=23 Score=37.19 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHH
Q 013954 278 EKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKE 333 (433)
Q Consensus 278 eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~E 333 (433)
+..++.++.+++.|+|+-|.+.+..++..=+-+. ++.--+|-||+.+|...|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 4577889999999999999999999887765554 577778888888886544
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.78 E-value=1.3e+02 Score=26.73 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=56.3
Q ss_pred HHHHHHHHHhCC---chhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-hcCCCHHHHHHHHH
Q 013954 280 ALKDGDSLMDSG---KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL-QSHPNALVSKRARQ 355 (433)
Q Consensus 280 a~~~Gk~amerG---kYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL-~sHP~~eVrKQAkr 355 (433)
.|.-+-.+..+. ..+++|.+||.....-+. ---+--..||++|=.+|+.++|+..|+.| +..|+- .||+.
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~QA~~ 115 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---KQVGA 115 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---HHHHH
Confidence 344444454443 456899999997774332 23467889999999999999999999999 578864 47888
Q ss_pred HhhHHH
Q 013954 356 FMFSFQ 361 (433)
Q Consensus 356 LlyiLE 361 (433)
|....+
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877766
No 238
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.70 E-value=27 Score=27.85 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 013954 320 QWSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkk 340 (433)
..|+-.|..|+.+||+.+|++
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 456778999999999999975
No 239
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.61 E-value=52 Score=25.65 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
..+...+..+..+=..|+|.+|+.+|..|++.+
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344445555555556677777777777666544
No 240
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.18 E-value=43 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
...+-+.++.+..+=..|+|.+|+.+|..+++.+
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3555566777777888999999999999987765
No 241
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=34.69 E-value=37 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 013954 245 EARAAKEERTRQLLAAYKKSVGLNVDPK 272 (433)
Q Consensus 245 EEkaaRe~rtke~LaaYrk~~Gl~Vdp~ 272 (433)
+|+-+=++++++.|.+.|.-.|++++|+
T Consensus 22 eEW~awRa~~~~~L~eer~~~~~~~~~~ 49 (50)
T 3zwl_E 22 KQWTEYREKIGQEMEKSMNFKIFDVQPE 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4666667888999999999999999986
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.67 E-value=72 Score=31.23 Aligned_cols=91 Identities=7% Similarity=-0.014 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHH--HHHHhcC
Q 013954 252 ERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWS--ICQDSLH 329 (433)
Q Consensus 252 ~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLA--iAydA~G 329 (433)
++..+.+..+.++...++. ..+..++.|+-+++.|+|..|++.|.++.+.+... +-.+.++|. -++=..+
T Consensus 111 ~~l~~~~~~~~~~~~~e~e-----~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~ 182 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELE-----QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYN 182 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCC-----CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhc
Confidence 3444555555554322221 12235778999999999999999999999988543 333344332 2333468
Q ss_pred ChHHHHHHHHHHh----cCCCHHHH
Q 013954 330 RPKEARIMYEKLQ----SHPNALVS 350 (433)
Q Consensus 330 R~~EAiaLYkkL~----sHP~~eVr 350 (433)
....|...++++. ..++++++
T Consensus 183 d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 183 DQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred cHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 8999999999874 34454443
No 243
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=34.26 E-value=48 Score=22.66 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=16.1
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcc
Q 013954 408 LPYMIFLASPIFVILLIAVQRGS 430 (433)
Q Consensus 408 l~y~~~l~sPi~~v~~~A~~k~~ 430 (433)
...+|++..|++ ++++|.|+||
T Consensus 7 ~l~lIv~aGP~V-I~lLa~r~Gn 28 (29)
T 3arc_Y 7 MIAMIGIAGPMI-IFLLAVRRGN 28 (29)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTCC
T ss_pred HHHHHHhcCChh-eeehhhhcCC
Confidence 456677778865 5678899987
No 244
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=34.19 E-value=49 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
..+-+.++.+...=..|+|.+|+.+|..+++.+
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 445566677777788999999999999987765
No 245
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.85 E-value=41 Score=27.06 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
++-+.++.|+..---|.|..|+.+|+.|++.+.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999988774
No 246
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.42 E-value=41 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 276 ECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 276 e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+...+..+..+=..|+|.+|+.+|..|++++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l 48 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 48 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33344444444555566666666666655543
No 247
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=31.34 E-value=2.7e+02 Score=29.42 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=41.7
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHhh-HHHHHHhhhhccc---CCCCcchHHHHHHh
Q 013954 328 LHRPKEARIMYEKLQSHPNALVSKRARQFMF-SFQAMEMMKVRSS---SDKNTDYRNFFEAF 385 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly-iLEAp~llKv~~~---~~~~t~Yd~Yf~af 385 (433)
+...+||++.|+|+..+|+..++++=|+-+. .||+.+.-.+..+ +.+.-++-.|+..+
T Consensus 363 IRnvdDAL~sfeKyk~nlnkK~nakDR~AI~nALesvd~~~mAkNL~kfsK~Fk~~d~ai~~ 424 (511)
T 1rh1_A 363 IRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDMGNKFAALGKTFKAADYAIKA 424 (511)
T ss_dssp CCCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHHHCCHHHHHHTTSSSSSCSSSTTHHHHH
T ss_pred ecCHHHHHHHHHHHHhchhhccccccHHHHHHHHHhcCHHHHHHHHHHHhhhcccceeeeeH
Confidence 4458999999999999999999998877543 5666666666655 44554555555444
No 248
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=31.18 E-value=71 Score=25.12 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 013954 243 TAEARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEK 279 (433)
Q Consensus 243 teEEkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~ee 279 (433)
|+||+..|.+.++..|+.-| =-||+.|+..-+.++.
T Consensus 3 tEeE~~~Rr~avq~Aian~R-LEGLEpd~~~l~~~er 38 (61)
T 3shg_B 3 SEEEIEYRRRDARNALASQR-LEGLEPDPQVVAQMER 38 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhh-hccCCCCHHHHHHHHH
Confidence 89999999999999999886 4699999998776653
No 249
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=31.13 E-value=2.6e+02 Score=27.42 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=50.0
Q ss_pred HHHHHh-----CCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHh-cCChHHHHHHHHHHhc---C--CCHH----
Q 013954 284 GDSLMD-----SGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDS-LHRPKEARIMYEKLQS---H--PNAL---- 348 (433)
Q Consensus 284 Gk~ame-----rGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA-~GR~~EAiaLYkkL~s---H--P~~e---- 348 (433)
|..++. -|..+.|..+||+|+++-+.+. + .+...++--|-- .|+.++|..+.++-.. | |...
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-i--d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-P--DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-S--HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-c--hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 555555 3999999999999999886332 2 344555655544 5999999999998753 3 5555
Q ss_pred -HHHHHHHHh
Q 013954 349 -VSKRARQFM 357 (433)
Q Consensus 349 -VrKQAkrLl 357 (433)
-+++|+.||
T Consensus 283 ~~q~eA~~LL 292 (301)
T 3u64_A 283 LSQKRARWLK 292 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 566777765
No 250
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.98 E-value=1.6e+02 Score=28.72 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=40.7
Q ss_pred HHHHHhCC-chhhhhhHHHHHHhhcccccchhHHHHHH--HHHHHHhc-C-ChHHHHHHHHHHh-cCCC
Q 013954 284 GDSLMDSG-KLKEALPFYEKVMNKMVFKSELHGLAALQ--WSICQDSL-H-RPKEARIMYEKLQ-SHPN 346 (433)
Q Consensus 284 Gk~amerG-kYreAV~~lEkA~~~v~~~S~LGGeaqLw--LAiAydA~-G-R~~EAiaLYkkL~-sHP~ 346 (433)
|..+..-| .|.+++.++++++..-+-+ .++| -..|++.+ + +.++++++|.++. .||.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKS------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 66777777 4899999999888655443 2333 44566666 7 8889999998885 6764
No 251
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.84 E-value=76 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
..+-+.+..+..+=..|+|.+|+.+|..|++.+
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l 45 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDML 45 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344445555555556677777777666665544
No 252
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=30.52 E-value=49 Score=34.55 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred HHHHHhhcCCCCCcc-hHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHH---------HHHHHHHHh
Q 013954 258 LAAYKKSVGLNVDPK-LKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAA---------LQWSICQDS 327 (433)
Q Consensus 258 LaaYrk~~Gl~Vdp~-~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaq---------LwLAiAydA 327 (433)
+.+.-+..|++-|.. ...+++++-...-.-|-.-+=+-=++.|.+|.+.+ |-+|.++. |---+|-++
T Consensus 264 peeiyealgfn~de~qrq~~ak~~a~d~~~~~~~nr~riqsDVL~kAsEII---sDfgkKItEkyGeKykklAkELAe~a 340 (505)
T 3few_X 264 PEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVI---SDIGNKVGDYLGDAYKSLAREIADDV 340 (505)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHHH---HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556788888874 33444443333222211111122255566666655 44443332 222344443
Q ss_pred -------cCChHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHHHhhh
Q 013954 328 -------LHRPKEARIMYEKLQSHPNALVSKRARQFMFSFQAMEMMK 367 (433)
Q Consensus 328 -------~GR~~EAiaLYkkL~sHP~~eVrKQAkrLlyiLEAp~llK 367 (433)
+...+||++.|+|+.++|+..++++=|.- |..|.+.+.
T Consensus 341 KNFQGKKIRSvdDALaSfEKyksNlnkKfnakDR~A--IanALeSvD 385 (505)
T 3few_X 341 KNFQGKTIRSYDDAMASLNKVLSNPGFKFNRADSDA--LANVWRSID 385 (505)
T ss_dssp HTCTTCCCCCHHHHHHHHHHHHTCTTCCCCHHHHHH--HHHHHHHCC
T ss_pred hhccCCccCCHHHHHHHHHHHhhChhhhcchhhHHH--HHHHHHHcC
Confidence 45689999999999999999999876653 444444333
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.14 E-value=1e+02 Score=30.54 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=42.1
Q ss_pred HHHHHHHHH-HHHHHhCCchhhhhhHHHH-HHhhccc-ccchhHHHHHHHHHHHHhcC
Q 013954 275 SECEKALKD-GDSLMDSGKLKEALPFYEK-VMNKMVF-KSELHGLAALQWSICQDSLH 329 (433)
Q Consensus 275 ~e~eea~~~-Gk~amerGkYreAV~~lEk-A~~~v~~-~S~LGGeaqLwLAiAydA~G 329 (433)
-|+.+.|+. .-+++.+++|.+|++.|-. |..++.. +...|++..+.++-+|+..+
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 555666654 7789999999999998777 4554443 35778899999999998876
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=29.74 E-value=73 Score=29.29 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=44.8
Q ss_pred HHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHH
Q 013954 286 SLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNAL 348 (433)
Q Consensus 286 ~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~e 348 (433)
.+..+|+- +.||++...+-++....++.-+-+|.||..+|...+|..|-++-...--++
T Consensus 100 ~lv~~~Kk----DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 100 ILVIQGKR----DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHTTCH----HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccH----hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 34455553 457888888777899999999999999999999999999988765444444
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=29.54 E-value=40 Score=30.71 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCcchHHHHHHHHHH----HHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHH--HHHHHHhcCChHHHHHHHH
Q 013954 268 NVDPKLKSECEKALKD----GDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQ--WSICQDSLHRPKEARIMYE 339 (433)
Q Consensus 268 ~Vdp~~k~e~eea~~~----Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLw--LAiAydA~GR~~EAiaLYk 339 (433)
.|+|..-+.|-.-++. |.-..+ +-+.+-++.||.|...+|+..... -=|.|| +|. +..++..++|+.+|+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQ 84 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 5666666666544443 333223 333777789999999999874222 134444 664 577799999999999
Q ss_pred HHhcCCCHHH
Q 013954 340 KLQSHPNALV 349 (433)
Q Consensus 340 kL~sHP~~eV 349 (433)
.+.++ |...
T Consensus 85 ~a~~~-hKkF 93 (161)
T 4h7y_A 85 MARAN-CKKF 93 (161)
T ss_dssp HHHHH-CTTB
T ss_pred HHHHH-hHHH
Confidence 99766 5444
No 256
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=29.31 E-value=2.3e+02 Score=27.42 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHH--------------hCCch-----------------hhhhhHHH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLM--------------DSGKL-----------------KEALPFYE 301 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~am--------------erGkY-----------------reAV~~lE 301 (433)
...+.+..||+++ ..++...|...++.=+... =.|+| ..|...|+
T Consensus 101 ~~~~~i~~yr~ki----e~EL~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq 176 (268)
T 3efz_A 101 EFIQVIEDIKRDF----EESILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYE 176 (268)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 3456788888775 4456677777765532211 01332 46778888
Q ss_pred HHHhhc------cccc-chhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 302 KVMNKM------VFKS-ELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 302 kA~~~v------~~~S-~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
.|++.. ++.. ..-|.+-=+=+--||-++..++|+.|.++-
T Consensus 177 ~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~A 223 (268)
T 3efz_A 177 DALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223 (268)
T ss_dssp HHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886543 3222 222555444455688999999999999885
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.16 E-value=3.2e+02 Score=26.92 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchh--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELH--GLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LG--GeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
....++.+++.|+|.+|...+......+-..-.-. =++.+..+-.|=..+....|..++++..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567778899999999999998754432211111 2455555555666899999999999863
No 258
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=28.48 E-value=64 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC
Q 013954 319 LQWSICQDSLHRPKEARIMYEKLQSHP 345 (433)
Q Consensus 319 LwLAiAydA~GR~~EAiaLYkkL~sHP 345 (433)
.||+--|-++|.++||-++=++++...
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q~k~~q 32 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKTLKNKQ 32 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 478999999999999999988887543
No 259
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=27.75 E-value=64 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
-.+++.-++.++.+++.|.|..|.=+.++|+++.
T Consensus 8 l~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~ 41 (122)
T 1wol_A 8 IKQAERDLEEARYAKSGGYYELACFLSQQCAEKA 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4677888999999999999999888887776664
No 260
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=27.61 E-value=62 Score=26.98 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 275 SECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 275 ~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
.+++.-|+.++.+++.|.|..|.=+.++|+++.
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Eka 46 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKA 46 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 678889999999999999999888877776664
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=27.09 E-value=1.3e+02 Score=29.18 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-HHHHHhCCchhhhhhHHHHH-Hhhcc-cccchhHHHHHHHHHHHH
Q 013954 250 KEERTRQLLAAYKKSVGLNVDPKLKSECEKALKD-GDSLMDSGKLKEALPFYEKV-MNKMV-FKSELHGLAALQWSICQD 326 (433)
Q Consensus 250 Re~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~-Gk~amerGkYreAV~~lEkA-~~~v~-~~S~LGGeaqLwLAiAyd 326 (433)
+-.||.++|.+- |+...--|+.+.|+. .-+++.+++|.+|++.+... ..++. .+...|++..+.+.-+|+
T Consensus 12 ~~~r~l~rl~~~-------I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~ 84 (312)
T 2wpv_A 12 KLAKTLQRFENK-------IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYD 84 (312)
T ss_dssp CHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 445555555543 223344566666655 78888999999999997764 44333 344677888888999998
Q ss_pred hcCCh
Q 013954 327 SLHRP 331 (433)
Q Consensus 327 A~GR~ 331 (433)
..+-.
T Consensus 85 ~~~~~ 89 (312)
T 2wpv_A 85 LAEVK 89 (312)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 87653
No 262
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.70 E-value=3.4e+02 Score=24.12 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHhcCCh----HH----HHHHHHHHhcCCCHHHHHHHHHHhhH
Q 013954 312 ELHGLAALQWSICQDSLHRP----KE----ARIMYEKLQSHPNALVSKRARQFMFS 359 (433)
Q Consensus 312 ~LGGeaqLwLAiAydA~GR~----~E----AiaLYkkL~sHP~~eVrKQAkrLlyi 359 (433)
++=-++..||..|+...|-. .. .+....+|-.|++++||..|..++--
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45567788999999887643 22 23344566689999999999998743
No 263
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.51 E-value=44 Score=30.29 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=38.0
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhccc------------------ccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMVF------------------KSELHGLAALQWSICQDSLHRPKEARIMYEKLQS 343 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~~------------------~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~s 343 (433)
+.|+.|+..|++.-|...|.++-+.-.. -....|...+-. +|+=-+|+.++|+.||.+.-+
T Consensus 39 ~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af-~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 39 RLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSML-LNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHH-HHHHHcCCHHHHHHHHHHCCC
Confidence 4599999999999999988886332111 111112121111 223347888888888877655
Q ss_pred CC
Q 013954 344 HP 345 (433)
Q Consensus 344 HP 345 (433)
.|
T Consensus 118 ~~ 119 (177)
T 3mkq_B 118 LP 119 (177)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 264
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.08 E-value=2.4e+02 Score=22.12 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.6
Q ss_pred hhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 013954 294 KEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQSHPNALVSKRARQFM 357 (433)
Q Consensus 294 reAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~sHP~~eVrKQAkrLl 357 (433)
..+++.|.++++-- .-.|..+-+.++-.+|. .+++....++-.+++..||..|.+-|
T Consensus 72 ~~a~~~L~~~L~d~------~~~VR~~A~~aL~~~~~-~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ERAVEPLIKLLEDD------SGFVRSGAARSLEQIGG-ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHHC------CTHHHHHHHHHHHHHCS-HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56788888877521 23677777777777885 56777777777899999999987654
No 265
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=26.04 E-value=1.5e+02 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=27.7
Q ss_pred HHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 013954 284 GDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL 341 (433)
Q Consensus 284 Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL 341 (433)
++.++.+|++..|...|.+ -|.+.-- .-+|..++|.++|+.|.++.
T Consensus 730 ~~~a~~~~~~~~A~~~~~~-----------~g~~~~a-~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 730 AKDAETTGKFNLAFNAYWI-----------AGDIQGA-KDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----------HTCHHHH-HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCchHHHHHHHHH-----------cCCHHHH-HHHHHHcCChHHHHHHHHHh
Confidence 4444555555555544433 2333222 33488899999999999974
No 266
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=25.77 E-value=1.9e+02 Score=24.28 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHH
Q 013954 253 RTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVM 304 (433)
Q Consensus 253 rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~ 304 (433)
.|...|.. -+.+|-+-....-..++..|...+.+|..++|+.|-.+.|++.
T Consensus 11 ~te~Ai~~-A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 11 LTEQALEQ-AKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp HHHHHHHH-HHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44455555 3345544444445788999999999999999999999999963
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.44 E-value=47 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.4
Q ss_pred HHHHHHHhCCchhhhhhHHHHHHhhcc
Q 013954 282 KDGDSLMDSGKLKEALPFYEKVMNKMV 308 (433)
Q Consensus 282 ~~Gk~amerGkYreAV~~lEkA~~~v~ 308 (433)
..+..+...|+|.+|++..++|++.+.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 347788999999999999999877663
No 268
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=24.94 E-value=65 Score=26.01 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhc
Q 013954 274 KSECEKALKDGDSLMDSGKLKEALPFYEKVMNKM 307 (433)
Q Consensus 274 k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v 307 (433)
..+++.-++.++.+++.|.|..|.=+.++|+++.
T Consensus 8 ~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~ 41 (127)
T 1ufb_A 8 LEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAA 41 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4677888999999999999999888888877664
No 269
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=24.45 E-value=1.2e+02 Score=29.77 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=34.7
Q ss_pred ccccccccCCCCCCccccCCCcccCCCCccCcHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 013954 212 KVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEARAAKEERTRQLLAAYKKSVGLNVDPK 272 (433)
Q Consensus 212 kVsTWGvFPRP~NISkayGGGR~IrpGe~lEteEEkaaRe~rtke~LaaYrk~~Gl~Vdp~ 272 (433)
..+|=|-||||..+-++ |.-...+.+..+|=++.-++.+++.++. -+..||+|-..
T Consensus 19 ptt~vGSfprp~~l~~a----r~~~~~g~i~~~~l~~~~~~ai~~~V~~-Q~~~Gldvvtd 74 (357)
T 3rpd_A 19 PTSTAGSLPKPLWLAEP----ETLWSPWKLQGEELITGKHDALRLSLQD-QQLAGIDIVSD 74 (357)
T ss_dssp CCCCSSCCCCCTTTBCT----TCSSCCBSCCHHHHHHHHHHHHHHHHHH-HHHTTCSSBCC
T ss_pred ccceeccCCCCHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHcCCCcccC
Confidence 46889999999988876 2222223454444445555555555554 45689887544
No 270
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.15 E-value=78 Score=25.29 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH--------hcCCCHHHHHH
Q 013954 318 ALQWSICQDSLHRPKEARIMYEKL--------QSHPNALVSKR 352 (433)
Q Consensus 318 qLwLAiAydA~GR~~EAiaLYkkL--------~sHP~~eVrKQ 352 (433)
.+.-|+-+|..|+.++|+.+|.+- +.-|++..+..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 456677789999999999999752 35567665443
No 271
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.04 E-value=1e+02 Score=30.33 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=45.6
Q ss_pred chhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhc-----CChHHHHHHHHHH-hcCCCH
Q 013954 292 KLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSL-----HRPKEARIMYEKL-QSHPNA 347 (433)
Q Consensus 292 kYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~-----GR~~EAiaLYkkL-~sHP~~ 347 (433)
..++|...+|+|+++=+ +-+.|.+...|.+.|..+ |..+.|..+|++- .-+|+.
T Consensus 178 ~l~~A~a~lerAleLDP--~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP--SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHHHHhCC--CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 35788889999988764 456899999999999997 9999999999987 468864
No 272
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=22.97 E-value=36 Score=32.08 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=30.3
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHhh-HHHHHHhhhhcc
Q 013954 328 LHRPKEARIMYEKLQSHPNALVSKRARQFMF-SFQAMEMMKVRS 370 (433)
Q Consensus 328 ~GR~~EAiaLYkkL~sHP~~eVrKQAkrLly-iLEAp~llKv~~ 370 (433)
+...+||++.|+|...+|+..++++=|+-+. .||+.+.-.+.+
T Consensus 53 IRs~~dAl~s~eK~k~nlnkK~n~kDr~AI~~Al~s~d~~~~A~ 96 (204)
T 1col_A 53 IRSFDDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMAN 96 (204)
T ss_dssp CCCHHHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhhChhhhcchhhHHHHHHHHHHcCHHHHHH
Confidence 5568999999999999999999887766432 344443333333
No 273
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.78 E-value=1e+02 Score=30.50 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccc
Q 013954 269 VDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFK 310 (433)
Q Consensus 269 Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~ 310 (433)
+-+..-....+.++.|-++|..|++.+|+..|..++-.+++-
T Consensus 94 ~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~ 135 (320)
T 3mkr_B 94 AVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLL 135 (320)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhe
Confidence 334344555668999999999999999999999998888654
No 274
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=22.63 E-value=54 Score=32.16 Aligned_cols=123 Identities=11% Similarity=0.201 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHH
Q 013954 246 ARAAKEERTRQLLAAYKKSVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQ 325 (433)
Q Consensus 246 EkaaRe~rtke~LaaYrk~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAy 325 (433)
.-|-|.+|++++-..||.++|--+++...+++.+.+.+=.. ...-||..|.
T Consensus 115 KLAfryr~IkeiY~~y~~nv~~LL~~~~r~~w~~lr~e~e~-----------------------------~Td~WLs~a~ 165 (274)
T 3geb_A 115 KLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEA-----------------------------LTDLWLTHSL 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHCTTHHHHHHHHHHHHHH-----------------------------HTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccCchhHHHHHHHHHHHHH-----------------------------HHhHHHHHHH
Confidence 34899999999999999999999999888888877644322 2344666554
Q ss_pred HhcCChHHHHHHHHHHhcC------CCHHHHHHHHHHhhHHHHHHhhhhcccCC-C----CcchHHHHHHhhcccccccC
Q 013954 326 DSLHRPKEARIMYEKLQSH------PNALVSKRARQFMFSFQAMEMMKVRSSSD-K----NTDYRNFFEAFVEDKTNYPL 394 (433)
Q Consensus 326 dA~GR~~EAiaLYkkL~sH------P~~eVrKQAkrLlyiLEAp~llKv~~~~~-~----~t~Yd~Yf~af~~~k~~y~~ 394 (433)
..+ .+...=..+ --.-|.--||=|||+|=.+ ..+.+.|. . -+-++..-+.|..+-++-.+
T Consensus 166 k~L-------~~i~sr~~~vNVLVTs~qLVPaLaK~LLygL~~~--fpieNIYSa~kiGKesCFerI~~RFG~k~~yvvI 236 (274)
T 3geb_A 166 KAL-------NLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSV--FPIENIYSATKTGKESCFERIMQRFGRKAVYVVI 236 (274)
T ss_dssp HHH-------HHHHHSTTEEEEEEESSCHHHHHHHHHHTTCTTT--SCGGGEEETTTTCHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHH-------HhhccCCceeEEEEecCchHHHHHHHHHhhcccc--eecccccchhhcCHHHHHHHHHHHhCCCceEEEE
Confidence 433 111110011 1134677899999999876 55555544 2 34566666777555566668
Q ss_pred cccCchhhhhhh
Q 013954 395 QEAGSEEGALTQ 406 (433)
Q Consensus 395 ~e~~~~e~~l~q 406 (433)
.|+.+||.+..+
T Consensus 237 GDG~eEe~AAk~ 248 (274)
T 3geb_A 237 GDGVEEEQGAKK 248 (274)
T ss_dssp ESSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 887777777654
No 275
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.39 E-value=2.1e+02 Score=28.59 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=31.3
Q ss_pred HhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh---cCCCHHHH
Q 013954 288 MDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ---SHPNALVS 350 (433)
Q Consensus 288 merGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~---sHP~~eVr 350 (433)
-..|++.+|...|+...+. .-..--.+---|.-+|-..|+.++|..++++++ ..|+..+-
T Consensus 151 ~~~g~~~~A~~l~~~M~~~---G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVES---EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 3456666666666654322 011111222334445666677777777777664 45665543
No 276
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=22.01 E-value=5.3e+02 Score=24.74 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=30.3
Q ss_pred hhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCC--hHHHHHHHHHHh-cCC
Q 013954 293 LKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHR--PKEARIMYEKLQ-SHP 345 (433)
Q Consensus 293 YreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR--~~EAiaLYkkL~-sHP 345 (433)
|.+++.+++.++..-|-+.. +=..-..+++.+|+ .+++++.|.++. .||
T Consensus 90 l~~EL~~~~~~L~~~PKny~----aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp 141 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYG----TWHHRCWLLSRLPEPNWARELELCARFLEADE 141 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 78899999998875543321 11113455566664 577777777764 455
No 277
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=27.58 E-value=19 Score=38.28 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHH
Q 013954 277 CEKALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEA 334 (433)
Q Consensus 277 ~eea~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EA 334 (433)
.+..++.++.+|+.|+|+-|.+++..++..=+-+. ++.--+|-||+.+|...|.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~----~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANK----DARALQADAMEQLGYQTEN 514 (668)
Confidence 35678889999999999999999998877655544 5777789999999987764
No 278
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.17 E-value=3.6e+02 Score=27.60 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCchhhhhhHHHHHHhhcccccchhHHHHHHHHHHHHhcCChHHHHHHHHHH--hcCCCHHHHHHH
Q 013954 280 ALKDGDSLMDSGKLKEALPFYEKVMNKMVFKSELHGLAALQWSICQDSLHRPKEARIMYEKL--QSHPNALVSKRA 353 (433)
Q Consensus 280 a~~~Gk~amerGkYreAV~~lEkA~~~v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL--~sHP~~eVrKQA 353 (433)
.+-.|+.+-=++.+..|..+|++|.++.|. .|...-|||+.+-..|+.=+|.--|-+- ..+|.+.-+..-
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 456688888888899999999999999965 5888999999999989888887766544 368877655443
No 279
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=21.08 E-value=4e+02 Score=23.18 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=30.4
Q ss_pred ccCCCcc--cCCCCccCcHHHHHHHHHHHHHHHHHHHhhcC-CCCCcchH-HHHHHHHHHHHHH
Q 013954 228 TFGGGRT--IRPGDVLETAEARAAKEERTRQLLAAYKKSVG-LNVDPKLK-SECEKALKDGDSL 287 (433)
Q Consensus 228 ayGGGR~--IrpGe~lEteEEkaaRe~rtke~LaaYrk~~G-l~Vdp~~k-~e~eea~~~Gk~a 287 (433)
|-|=|.| |++|+.+..+|..+.=...+++..+.-++-+. ..+..... +.+--+|..|-..
T Consensus 29 TIGyGht~~v~~g~~iT~~ea~~ll~~dl~~~~~~v~~~~~~v~l~q~q~dALvSfayNvG~g~ 92 (163)
T 1xju_A 29 TDGIGNTHGVTPGVRKTDQQIAADWEKNILIAERCINQHFRGKDMPDNAFSAMTSAAFNMGCNS 92 (163)
T ss_dssp CTTCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHCHHH
T ss_pred eEEeccccCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcch
Confidence 6677777 88998874444433333333333333333333 44444433 4555667777443
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.71 E-value=1e+02 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 013954 321 WSICQDSLHRPKEARIMYEK 340 (433)
Q Consensus 321 LAiAydA~GR~~EAiaLYkk 340 (433)
.|+-.|..|+.++|+.+|..
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~ 38 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYN 38 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 34567999999999999975
No 281
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.43 E-value=1e+02 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChHHHHHHHHH--------HhcCCCHHHHH
Q 013954 320 QWSICQDSLHRPKEARIMYEK--------LQSHPNALVSK 351 (433)
Q Consensus 320 wLAiAydA~GR~~EAiaLYkk--------L~sHP~~eVrK 351 (433)
..|+-.|..|+.++|+.+|+. |+.-|++..+.
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~ 59 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRC 59 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 345677999999999999975 23446666543
No 282
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.18 E-value=1.6e+02 Score=29.38 Aligned_cols=112 Identities=5% Similarity=-0.070 Sum_probs=66.5
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHhCCchhhhhhHHHHHHhh-cccccchhHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 013954 264 SVGLNVDPKLKSECEKALKDGDSLMDSGKLKEALPFYEKVMNK-MVFKSELHGLAALQWSICQDSLHRPKEARIMYEKLQ 342 (433)
Q Consensus 264 ~~Gl~Vdp~~k~e~eea~~~Gk~amerGkYreAV~~lEkA~~~-v~~~S~LGGeaqLwLAiAydA~GR~~EAiaLYkkL~ 342 (433)
..|+.-|.-+....- ..+...|++.+|+..|+..... +.++. .+---+..+|-..|+.++|..+++.+.
T Consensus 98 ~~G~~Pd~~tyn~lI------~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 98 VDKVVPNEATFTNGA------RLAVAKDDPEMAFDMVKQMKAFGIQPRL----RSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HTTCCCCHHHHHHHH------HHHHHHTCHHHHHHHHHHHHHTTCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCcc----ceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 446655554433222 3345679999999999986543 22221 112224456677999999999999997
Q ss_pred c---CCCHHH-------HHHHHHHhhHHHHHHhhhhcccCCCCcchHHHHHHh
Q 013954 343 S---HPNALV-------SKRARQFMFSFQAMEMMKVRSSSDKNTDYRNFFEAF 385 (433)
Q Consensus 343 s---HP~~eV-------rKQAkrLlyiLEAp~llKv~~~~~~~t~Yd~Yf~af 385 (433)
. .|+..+ --++.++--+++-.+.|+-....|..+.|...-+.|
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 4 455442 233444444455555566555566666665554444
Done!