Query 013955
Match_columns 433
No_of_seqs 380 out of 2927
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02533 probable purple acid 100.0 1.6E-79 3.5E-84 612.5 47.8 402 17-419 17-426 (427)
2 KOG1378 Purple acid phosphatas 100.0 5.2E-73 1.1E-77 546.0 37.4 378 38-419 40-444 (452)
3 cd00839 MPP_PAPs purple acid p 100.0 4.8E-47 1E-51 365.4 29.7 275 134-412 2-294 (294)
4 PTZ00422 glideosome-associated 100.0 7.8E-36 1.7E-40 288.6 27.1 255 134-414 24-331 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 1.4E-33 3.1E-38 269.3 22.9 241 137-397 1-275 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 8.5E-29 1.8E-33 234.4 22.0 227 134-396 2-261 (262)
7 KOG2679 Purple (tartrate-resis 100.0 7.2E-29 1.6E-33 221.6 19.3 264 127-414 33-331 (336)
8 PF09423 PhoD: PhoD-like phosp 99.9 7.3E-24 1.6E-28 215.7 27.4 293 96-394 58-453 (453)
9 cd07402 MPP_GpdQ Enterobacter 99.9 1.2E-24 2.7E-29 203.2 18.2 217 138-387 1-238 (240)
10 cd07396 MPP_Nbla03831 Homo sap 99.9 1.8E-24 3.8E-29 205.1 17.7 193 137-352 1-244 (267)
11 PRK11148 cyclic 3',5'-adenosin 99.9 2.1E-23 4.5E-28 198.7 21.4 238 128-400 5-264 (275)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 3.4E-22 7.4E-27 187.9 16.3 186 139-335 2-217 (256)
13 COG3540 PhoD Phosphodiesterase 99.9 3.5E-21 7.7E-26 185.4 16.4 279 44-329 39-419 (522)
14 cd07399 MPP_YvnB Bacillus subt 99.9 4.8E-21 1E-25 175.4 13.9 150 137-333 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 1.5E-19 3.2E-24 174.2 14.5 188 141-332 42-265 (296)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 1.2E-17 2.6E-22 156.4 16.3 168 153-332 35-232 (257)
17 PF00149 Metallophos: Calcineu 99.8 1.3E-18 2.9E-23 152.5 6.9 188 137-328 1-200 (200)
18 cd07393 MPP_DR1119 Deinococcus 99.7 6.5E-17 1.4E-21 150.0 14.8 190 140-352 2-226 (232)
19 TIGR03767 P_acnes_RR metalloph 99.7 2.9E-16 6.3E-21 154.8 19.2 114 235-351 290-416 (496)
20 cd07383 MPP_Dcr2 Saccharomyces 99.7 1E-16 2.3E-21 145.3 14.3 150 135-332 1-180 (199)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.7 2.2E-16 4.9E-21 141.5 14.7 167 139-329 1-174 (188)
22 TIGR03729 acc_ester putative p 99.7 6.7E-16 1.5E-20 144.0 14.8 190 138-350 1-236 (239)
23 COG1409 Icc Predicted phosphoh 99.6 2.4E-15 5.2E-20 144.7 15.1 179 137-328 1-193 (301)
24 cd07400 MPP_YydB Bacillus subt 99.6 1.1E-14 2.3E-19 125.0 12.4 132 139-351 1-144 (144)
25 cd07385 MPP_YkuE_C Bacillus su 99.6 9.6E-15 2.1E-19 134.8 12.9 168 136-335 1-173 (223)
26 PRK11340 phosphodiesterase Yae 99.6 5.2E-14 1.1E-18 133.6 15.8 168 133-334 46-220 (271)
27 cd07388 MPP_Tt1561 Thermus the 99.6 7.3E-14 1.6E-18 127.6 15.5 174 135-326 3-189 (224)
28 cd07404 MPP_MS158 Microscilla 99.6 2.1E-14 4.6E-19 126.3 10.9 145 139-331 1-152 (166)
29 TIGR03768 RPA4764 metallophosp 99.6 6.4E-14 1.4E-18 136.9 14.5 92 236-328 292-411 (492)
30 KOG1432 Predicted DNA repair e 99.5 1.9E-12 4.1E-17 120.7 21.0 254 134-409 51-373 (379)
31 cd00840 MPP_Mre11_N Mre11 nucl 99.5 9.4E-14 2E-18 128.0 12.4 186 138-331 1-204 (223)
32 PF14008 Metallophos_C: Iron/z 99.5 1.9E-13 4.2E-18 98.8 7.0 62 342-408 1-62 (62)
33 cd00838 MPP_superfamily metall 99.4 6.2E-12 1.3E-16 104.8 11.2 116 140-332 1-119 (131)
34 cd07379 MPP_239FB Homo sapiens 99.3 8.6E-12 1.9E-16 105.8 11.3 134 138-349 1-134 (135)
35 COG1408 Predicted phosphohydro 99.2 3.5E-11 7.5E-16 114.0 10.6 75 134-209 42-119 (284)
36 cd07397 MPP_DevT Myxococcus xa 99.2 1.6E-10 3.4E-15 106.0 14.5 64 137-209 1-64 (238)
37 PF12850 Metallophos_2: Calcin 99.2 2.7E-11 5.8E-16 105.0 8.7 138 137-354 1-139 (156)
38 cd07394 MPP_Vps29 Homo sapiens 99.2 4.5E-09 9.7E-14 93.2 19.0 166 138-401 1-170 (178)
39 cd08166 MPP_Cdc1_like_1 unchar 99.2 1.3E-10 2.8E-15 103.2 9.1 109 158-332 38-151 (195)
40 cd00841 MPP_YfcE Escherichia c 99.1 3.3E-10 7.1E-15 98.3 10.6 132 138-355 1-133 (155)
41 PRK05340 UDP-2,3-diacylglucosa 99.1 4E-10 8.6E-15 105.3 11.3 174 137-330 1-201 (241)
42 COG2129 Predicted phosphoester 99.1 9.8E-10 2.1E-14 97.9 12.8 176 135-330 2-189 (226)
43 PF14582 Metallophos_3: Metall 99.1 2.1E-10 4.5E-15 101.8 8.2 178 136-329 5-219 (255)
44 KOG3770 Acid sphingomyelinase 99.1 2.1E-09 4.5E-14 108.0 13.5 172 152-329 198-405 (577)
45 cd08165 MPP_MPPE1 human MPPE1 99.0 2E-09 4.4E-14 93.4 10.7 51 158-208 34-89 (156)
46 TIGR01854 lipid_A_lpxH UDP-2,3 99.0 5.9E-09 1.3E-13 96.7 13.7 69 140-208 2-81 (231)
47 TIGR00040 yfcE phosphoesterase 99.0 4.6E-09 9.9E-14 91.5 11.5 61 137-207 1-63 (158)
48 cd07389 MPP_PhoD Bacillus subt 99.0 7.7E-09 1.7E-13 95.7 13.3 156 138-331 1-207 (228)
49 cd07384 MPP_Cdc1_like Saccharo 99.0 2.6E-09 5.7E-14 94.1 9.5 50 159-208 42-100 (171)
50 cd07403 MPP_TTHA0053 Thermus t 98.9 6.1E-09 1.3E-13 87.4 9.8 104 140-331 1-106 (129)
51 PRK09453 phosphodiesterase; Pr 98.9 3.8E-08 8.2E-13 87.8 15.0 71 137-208 1-76 (182)
52 TIGR00583 mre11 DNA repair pro 98.9 1.1E-07 2.3E-12 94.6 18.8 44 135-178 2-58 (405)
53 cd00845 MPP_UshA_N_like Escher 98.9 2.4E-08 5.3E-13 93.9 12.2 175 137-330 1-208 (252)
54 PHA02546 47 endonuclease subun 98.8 2.3E-07 5E-12 91.0 18.8 72 137-208 1-89 (340)
55 cd07406 MPP_CG11883_N Drosophi 98.8 1E-07 2.2E-12 89.8 14.1 175 137-329 1-208 (257)
56 cd07410 MPP_CpdB_N Escherichia 98.8 1.2E-07 2.6E-12 90.4 14.5 179 137-329 1-231 (277)
57 COG1768 Predicted phosphohydro 98.8 1.8E-07 3.8E-12 79.9 12.9 165 161-351 42-219 (230)
58 cd07398 MPP_YbbF-LpxH Escheric 98.7 3.1E-08 6.8E-13 90.8 8.3 188 140-351 1-216 (217)
59 cd08164 MPP_Ted1 Saccharomyces 98.7 7.4E-08 1.6E-12 85.5 7.8 56 154-209 35-112 (193)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.6 1.3E-06 2.9E-11 82.0 16.3 182 139-334 1-235 (262)
61 COG0420 SbcD DNA repair exonuc 98.6 1.7E-07 3.8E-12 93.8 10.4 73 137-209 1-89 (390)
62 cd07412 MPP_YhcR_N Bacillus su 98.6 8.5E-07 1.8E-11 85.0 14.2 204 137-353 1-261 (288)
63 COG0622 Predicted phosphoester 98.5 7.7E-06 1.7E-10 71.6 16.6 162 137-396 2-164 (172)
64 cd07382 MPP_DR1281 Deinococcus 98.5 4.8E-06 1E-10 77.8 16.0 190 138-356 1-202 (255)
65 cd07408 MPP_SA0022_N Staphyloc 98.5 1.2E-06 2.6E-11 82.6 12.1 181 137-330 1-215 (257)
66 TIGR00282 metallophosphoestera 98.5 6.6E-06 1.4E-10 77.1 16.4 191 137-356 1-205 (266)
67 cd07411 MPP_SoxB_N Thermus the 98.5 2E-06 4.4E-11 81.4 12.9 157 153-329 40-220 (264)
68 cd07409 MPP_CD73_N CD73 ecto-5 98.4 2.8E-06 6.2E-11 81.1 11.8 156 154-329 40-219 (281)
69 PRK04036 DNA polymerase II sma 98.4 3.8E-06 8.2E-11 86.5 12.8 76 134-209 241-344 (504)
70 TIGR00619 sbcd exonuclease Sbc 98.3 1.2E-06 2.7E-11 82.2 6.6 72 137-208 1-88 (253)
71 cd07386 MPP_DNA_pol_II_small_a 98.3 1.2E-05 2.7E-10 75.1 12.9 69 140-208 2-94 (243)
72 KOG3662 Cell division control 98.3 5.1E-06 1.1E-10 81.2 10.3 114 134-256 46-183 (410)
73 cd07407 MPP_YHR202W_N Saccharo 98.2 2.5E-05 5.5E-10 74.4 14.3 199 135-355 4-251 (282)
74 cd07424 MPP_PrpA_PrpB PrpA and 98.2 2.4E-06 5.2E-11 77.8 6.8 64 138-208 2-67 (207)
75 COG2908 Uncharacterized protei 98.2 7.1E-06 1.5E-10 74.2 9.5 186 141-353 2-216 (237)
76 PRK09419 bifunctional 2',3'-cy 98.2 1.8E-05 3.8E-10 89.8 14.5 184 135-329 659-883 (1163)
77 PRK10966 exonuclease subunit S 98.2 3E-06 6.6E-11 84.9 6.9 73 137-209 1-88 (407)
78 cd07425 MPP_Shelphs Shewanella 98.2 3.6E-06 7.7E-11 76.6 6.4 66 140-208 1-80 (208)
79 cd07380 MPP_CWF19_N Schizosacc 98.2 6.8E-06 1.5E-10 70.4 7.5 118 140-335 1-129 (150)
80 cd07405 MPP_UshA_N Escherichia 98.1 5.3E-05 1.1E-09 72.5 13.9 184 137-329 1-222 (285)
81 PRK11439 pphA serine/threonine 98.0 9.8E-06 2.1E-10 74.4 6.5 73 128-207 8-82 (218)
82 PRK09968 serine/threonine-spec 98.0 1.4E-05 3.1E-10 73.3 7.3 64 137-207 15-80 (218)
83 COG0737 UshA 5'-nucleotidase/2 98.0 9.8E-05 2.1E-09 76.8 14.0 183 134-328 24-247 (517)
84 PRK09558 ushA bifunctional UDP 97.8 0.00037 8.1E-09 73.0 14.6 187 134-329 32-258 (551)
85 cd07391 MPP_PF1019 Pyrococcus 97.7 4.4E-05 9.5E-10 67.4 4.4 52 156-208 35-88 (172)
86 TIGR01530 nadN NAD pyrophospha 97.7 0.0006 1.3E-08 71.3 13.5 155 154-329 40-219 (550)
87 cd08162 MPP_PhoA_N Synechococc 97.7 0.0006 1.3E-08 66.1 12.3 38 278-329 207-245 (313)
88 COG1311 HYS2 Archaeal DNA poly 97.6 0.00061 1.3E-08 67.7 11.8 76 134-209 223-322 (481)
89 PHA02239 putative protein phos 97.5 0.00014 2.9E-09 67.5 5.2 70 137-208 1-73 (235)
90 TIGR00024 SbcD_rel_arch putati 97.5 0.00016 3.4E-09 66.6 5.5 69 137-207 15-101 (225)
91 PRK09419 bifunctional 2',3'-cy 97.4 0.0018 3.9E-08 73.8 14.0 57 268-329 224-281 (1163)
92 COG1692 Calcineurin-like phosp 97.4 0.0049 1.1E-07 56.0 13.8 192 137-354 1-202 (266)
93 PRK09418 bifunctional 2',3'-cy 97.4 0.0038 8.2E-08 67.4 15.1 66 278-357 244-310 (780)
94 cd07387 MPP_PolD2_C PolD2 (DNA 97.4 0.0032 7E-08 58.8 12.7 133 139-273 2-176 (257)
95 PRK11907 bifunctional 2',3'-cy 97.3 0.0064 1.4E-07 65.8 16.1 59 265-328 296-354 (814)
96 PF13277 YmdB: YmdB-like prote 97.3 0.0029 6.3E-08 58.2 11.1 190 140-355 1-199 (253)
97 KOG2863 RNA lariat debranching 97.3 0.001 2.2E-08 63.2 8.4 173 137-327 1-229 (456)
98 PRK00166 apaH diadenosine tetr 97.3 0.0003 6.6E-09 66.6 4.8 66 137-207 1-68 (275)
99 COG4186 Predicted phosphoester 97.2 0.0072 1.6E-07 51.0 11.4 66 138-208 5-86 (186)
100 cd07423 MPP_PrpE Bacillus subt 97.2 0.00044 9.6E-09 64.2 4.6 67 138-207 2-79 (234)
101 cd07390 MPP_AQ1575 Aquifex aeo 97.1 0.00062 1.3E-08 59.8 4.8 42 161-208 41-82 (168)
102 cd07421 MPP_Rhilphs Rhilph pho 96.9 0.0011 2.5E-08 62.5 5.0 67 138-207 3-79 (304)
103 PRK13625 bis(5'-nucleosyl)-tet 96.9 0.00098 2.1E-08 62.3 4.5 68 137-207 1-78 (245)
104 cd07413 MPP_PA3087 Pseudomonas 96.9 0.0011 2.4E-08 61.0 4.5 67 139-208 1-76 (222)
105 COG5555 Cytolysin, a secreted 96.9 0.001 2.2E-08 61.3 4.0 167 162-329 126-335 (392)
106 PF00041 fn3: Fibronectin type 96.9 0.0045 9.7E-08 46.9 7.2 70 42-121 2-75 (85)
107 cd07381 MPP_CapA CapA and rela 96.9 0.01 2.2E-07 55.2 10.8 62 265-332 162-223 (239)
108 TIGR01390 CycNucDiestase 2',3' 96.9 0.013 2.9E-07 62.2 12.8 45 278-328 195-240 (626)
109 PRK09420 cpdB bifunctional 2', 96.8 0.02 4.4E-07 61.0 13.9 56 267-328 207-263 (649)
110 smart00854 PGA_cap Bacterial c 96.7 0.015 3.3E-07 54.0 11.0 61 266-332 161-221 (239)
111 cd00144 MPP_PPP_family phospho 96.7 0.0015 3.3E-08 60.0 3.9 66 140-208 1-68 (225)
112 cd07422 MPP_ApaH Escherichia c 96.6 0.0027 5.8E-08 59.6 4.7 64 140-208 2-67 (257)
113 PF09587 PGA_cap: Bacterial ca 96.5 0.079 1.7E-06 49.6 13.8 64 263-332 169-232 (250)
114 TIGR00668 apaH bis(5'-nucleosy 96.3 0.0043 9.4E-08 58.5 4.0 65 138-207 2-68 (279)
115 KOG4419 5' nucleotidase [Nucle 96.3 0.02 4.3E-07 58.4 8.8 157 160-328 84-269 (602)
116 COG1407 Predicted ICC-like pho 96.2 0.0086 1.9E-07 54.7 5.4 72 136-208 19-110 (235)
117 KOG2310 DNA repair exonuclease 96.0 0.013 2.8E-07 58.9 6.1 45 134-178 11-68 (646)
118 KOG3325 Membrane coat complex 95.1 0.36 7.8E-06 40.5 10.4 84 306-411 97-181 (183)
119 cd07416 MPP_PP2B PP2B, metallo 95.1 0.025 5.4E-07 54.5 4.3 68 138-208 44-114 (305)
120 smart00156 PP2Ac Protein phosp 94.9 0.031 6.8E-07 53.0 4.2 69 137-208 28-99 (271)
121 KOG0196 Tyrosine kinase, EPH ( 94.4 0.17 3.6E-06 53.7 8.4 77 46-133 449-537 (996)
122 cd07415 MPP_PP2A_PP4_PP6 PP2A, 94.4 0.045 9.8E-07 52.2 4.1 68 138-208 43-113 (285)
123 cd07414 MPP_PP1_PPKL PP1, PPKL 94.1 0.047 1E-06 52.3 3.7 68 138-208 51-121 (293)
124 PTZ00239 serine/threonine prot 93.9 0.065 1.4E-06 51.5 4.2 67 139-208 45-114 (303)
125 cd07420 MPP_RdgC Drosophila me 93.6 0.13 2.8E-06 49.9 5.6 69 138-209 52-124 (321)
126 cd07418 MPP_PP7 PP7, metalloph 93.6 0.088 1.9E-06 52.0 4.4 69 137-208 66-138 (377)
127 PTZ00244 serine/threonine-prot 93.6 0.056 1.2E-06 51.8 3.0 68 139-208 54-123 (294)
128 PTZ00480 serine/threonine-prot 93.5 0.07 1.5E-06 51.6 3.6 68 138-208 60-130 (320)
129 KOG3947 Phosphoesterases [Gene 92.4 3.4 7.5E-05 38.6 12.6 69 134-209 59-127 (305)
130 smart00060 FN3 Fibronectin typ 92.0 1.3 2.7E-05 31.7 8.1 71 43-121 4-76 (83)
131 PF04042 DNA_pol_E_B: DNA poly 91.8 0.19 4E-06 45.6 3.8 113 139-253 1-136 (209)
132 cd07419 MPP_Bsu1_C Arabidopsis 91.7 0.22 4.7E-06 48.2 4.4 21 305-325 242-262 (311)
133 cd07417 MPP_PP5_C PP5, C-termi 91.5 0.31 6.7E-06 47.2 5.2 69 137-208 60-132 (316)
134 KOG4221 Receptor mediating net 89.9 0.56 1.2E-05 52.0 5.7 85 35-132 611-712 (1381)
135 cd00063 FN3 Fibronectin type 3 88.9 2.2 4.8E-05 31.4 7.2 70 42-121 3-76 (93)
136 KOG3513 Neural cell adhesion m 88.4 1.6 3.5E-05 48.2 8.0 83 30-121 810-896 (1051)
137 KOG2476 Uncharacterized conser 78.6 3.7 8.1E-05 41.0 5.1 66 136-205 5-75 (528)
138 PTZ00235 DNA polymerase epsilo 71.5 19 0.00041 34.3 7.7 83 126-208 17-122 (291)
139 KOG0372 Serine/threonine speci 67.6 11 0.00023 34.8 5.0 65 140-209 46-115 (303)
140 KOG3513 Neural cell adhesion m 65.2 21 0.00046 39.8 7.6 77 39-121 614-693 (1051)
141 PF08139 LPAM_1: Prokaryotic m 63.9 3.4 7.3E-05 23.6 0.7 18 1-18 6-24 (25)
142 KOG0374 Serine/threonine speci 63.9 7.6 0.00016 37.9 3.6 69 138-210 60-133 (331)
143 cd07390 MPP_AQ1575 Aquifex aeo 62.7 7.4 0.00016 33.8 3.0 34 281-332 108-141 (168)
144 KOG4221 Receptor mediating net 62.2 41 0.00089 38.1 9.0 81 42-131 523-611 (1381)
145 PF07353 Uroplakin_II: Uroplak 60.7 42 0.00092 28.7 6.9 15 105-119 105-119 (184)
146 KOG0373 Serine/threonine speci 59.4 19 0.00041 32.6 4.9 65 139-208 48-117 (306)
147 KOG0371 Serine/threonine prote 51.9 17 0.00036 33.8 3.4 65 139-208 62-131 (319)
148 COG2248 Predicted hydrolase (m 48.3 41 0.00089 31.3 5.3 74 134-208 174-250 (304)
149 PF01108 Tissue_fac: Tissue fa 46.4 1.1E+02 0.0024 24.1 7.2 70 42-121 24-98 (107)
150 TIGR02855 spore_yabG sporulati 46.0 17 0.00036 34.1 2.5 50 265-327 115-165 (283)
151 PF05582 Peptidase_U57: YabG p 44.7 21 0.00046 33.7 3.0 51 265-328 116-167 (287)
152 PF13473 Cupredoxin_1: Cupredo 44.7 42 0.00091 26.4 4.5 65 39-121 30-94 (104)
153 COG2843 PgsA Putative enzyme o 42.0 65 0.0014 32.0 6.1 62 264-332 210-272 (372)
154 PF01784 NIF3: NIF3 (NGG1p int 39.3 34 0.00074 31.7 3.6 45 282-328 55-99 (241)
155 KOG0375 Serine-threonine phosp 35.5 48 0.001 32.3 3.9 68 138-208 89-159 (517)
156 cd02856 Glycogen_debranching_e 33.7 56 0.0012 25.7 3.5 24 98-121 43-66 (103)
157 cd02852 Isoamylase_N_term Isoa 33.3 55 0.0012 26.4 3.5 22 99-120 48-69 (119)
158 PF06874 FBPase_2: Firmicute f 32.4 30 0.00065 36.4 2.2 44 158-207 180-223 (640)
159 PRK10301 hypothetical protein; 32.2 2.8E+02 0.0062 22.7 9.4 22 100-121 86-109 (124)
160 cd02853 MTHase_N_term Maltooli 30.6 64 0.0014 24.3 3.3 21 99-120 39-59 (85)
161 PRK11627 hypothetical protein; 29.8 1.3E+02 0.0028 26.9 5.5 18 1-18 1-19 (192)
162 PRK13792 lysozyme inhibitor; P 29.8 2.9E+02 0.0064 22.9 7.1 13 1-13 1-13 (127)
163 PF10731 Anophelin: Thrombin i 29.6 31 0.00066 24.2 1.1 16 1-16 1-16 (65)
164 PHA03008 hypothetical protein; 29.0 1.1E+02 0.0024 27.3 4.7 42 283-329 164-205 (234)
165 TIGR00486 YbgI_SA1388 dinuclea 28.9 1.1E+02 0.0024 28.5 5.2 44 282-328 59-102 (249)
166 KOG4258 Insulin/growth factor 28.5 2E+02 0.0043 31.7 7.3 102 43-145 489-623 (1025)
167 cd02860 Pullulanase_N_term Pul 28.5 71 0.0015 24.8 3.3 25 97-121 44-68 (100)
168 PF05643 DUF799: Putative bact 28.4 33 0.00071 31.1 1.5 34 1-34 1-42 (215)
169 PRK10799 metal-binding protein 28.3 1.2E+02 0.0025 28.3 5.2 44 283-329 59-102 (247)
170 PRK11449 putative deoxyribonuc 28.2 65 0.0014 30.2 3.5 141 152-331 22-162 (258)
171 PRK13791 lysozyme inhibitor; P 27.7 2.2E+02 0.0048 23.0 6.0 15 4-18 6-20 (113)
172 PF14292 SusE: SusE outer memb 27.7 1.8E+02 0.0039 23.5 5.7 23 44-66 35-57 (122)
173 PF09294 Interfer-bind: Interf 27.5 50 0.0011 25.8 2.3 19 103-121 68-86 (106)
174 PF15165 REC114-like: Meiotic 26.4 1.6E+02 0.0036 27.0 5.5 44 365-414 27-71 (243)
175 PRK11372 lysozyme inhibitor; P 25.7 1.4E+02 0.0031 23.9 4.6 17 2-18 3-19 (109)
176 PRK10425 DNase TatD; Provision 25.2 78 0.0017 29.7 3.5 141 152-332 18-158 (258)
177 PRK09810 entericidin A; Provis 25.0 43 0.00093 21.7 1.1 13 1-13 1-13 (41)
178 PF10179 DUF2369: Uncharacteri 24.3 67 0.0014 30.8 2.8 19 102-120 15-33 (300)
179 COG4856 Uncharacterized protei 23.4 1.9E+02 0.004 28.7 5.6 23 4-26 12-35 (403)
180 PF03808 Glyco_tran_WecB: Glyc 23.0 3.2E+02 0.007 23.6 6.8 52 261-324 58-109 (172)
181 TIGR03000 plancto_dom_1 Planct 21.6 2E+02 0.0042 21.5 4.2 24 98-121 25-48 (75)
182 PRK09918 putative fimbrial cha 21.6 5.6E+02 0.012 23.5 8.3 17 44-60 29-46 (230)
183 PF02922 CBM_48: Carbohydrate- 20.5 2E+02 0.0044 21.1 4.4 25 98-122 47-73 (85)
184 PF10333 Pga1: GPI-Mannosyltra 20.3 1.6E+02 0.0036 25.9 4.3 33 97-129 61-94 (180)
185 PF11714 Inhibitor_I53: Thromb 20.2 1.3E+02 0.0029 21.7 2.9 18 1-18 1-18 (78)
No 1
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1.6e-79 Score=612.49 Aligned_cols=402 Identities=60% Similarity=1.125 Sum_probs=353.4
Q ss_pred cCCCccccCCCCCCcccC-CCCCCCCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeee-
Q 013955 17 VTTAEYIRPQPRRTLEFP-WDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYL- 94 (433)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~qv~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~- 94 (433)
...+.|+||.|..++... .+......|+||||+++++++|+|+|.|.+. ..+.|+||++++.++.++.|.+++|.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qvhls~~~~~~m~V~W~T~~~-~~~~V~yG~~~~~l~~~a~g~~~~~~~~~ 95 (427)
T PLN02533 17 GNVLSYDRPGTRKNLVIHPDNEDDPTHPDQVHISLVGPDKMRISWITQDS-IPPSVVYGTVSGKYEGSANGTSSSYHYLL 95 (427)
T ss_pred cCcccccCCCccccccccccCCCCCCCCceEEEEEcCCCeEEEEEECCCC-CCCEEEEecCCCCCcceEEEEEEEEeccc
Confidence 345799999998866543 3457888999999999999999999999964 5689999999888888888887776642
Q ss_pred eeecCeEEEEEeCCCCCCCEEEEEecc--cCCeeEEECCCCCCCeEEEEEecCCCCCChHHHHHHhhcCCCceEEccccc
Q 013955 95 FYRSGKIHHTVIGPLEHDTVYFYRCGR--QGPEFEFKTPPAQFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDL 172 (433)
Q Consensus 95 ~~~~~~~~~v~l~~L~p~t~Y~Y~v~~--~s~~~~F~T~p~~~~~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~ 172 (433)
...++++|+|+|+||+|+|+|+|||+. .++.|+|+|+|...+++|+++||+|...+...+++.+.+.+|||||++||+
T Consensus 96 ~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~~~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl 175 (427)
T PLN02533 96 IYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPSKFPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDL 175 (427)
T ss_pred cccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCCCCCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCcc
Confidence 245789999999999999999999985 468899999998889999999999987777788999998999999999999
Q ss_pred cccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcc-cccccccccccccCCCCCCCCCCceEEEEeCeEEEEEE
Q 013955 173 SYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIML 251 (433)
Q Consensus 173 ~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~-~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~l 251 (433)
+|++..+..|+.|.+.++++...+|+|+++||||....+.. ...+..|.++|.+|.++.+...+.||+|++|++|||+|
T Consensus 176 ~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~L 255 (427)
T PLN02533 176 SYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIML 255 (427)
T ss_pred ccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEE
Confidence 99888778999999999999888999999999999654321 23577788999999866566678999999999999999
Q ss_pred cccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCC--ChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 252 GSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGE--GDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 252 ds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
|++.++....+|++||+++|++.++++.||+||++|+|+|++...+.+. ...+++.|++||++++||++|+||+|.|+
T Consensus 256 ds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 256 GSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred eCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceeccc
Confidence 9998887789999999999999877678999999999999876544332 23468899999999999999999999999
Q ss_pred eeeeccCCccCCCccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEEE
Q 013955 330 RSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQLW 409 (433)
Q Consensus 330 r~~~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f~ 409 (433)
|+.|+++++.+++|++||++|+||+.+++...+..++|+|++|++.+|||++|+|.|.|+|+|+|++++|++++|.|+||
T Consensus 336 R~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~ 415 (427)
T PLN02533 336 RFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVW 415 (427)
T ss_pred ccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEE
Confidence 99999999999999999999999999987666778889999999999999999999999999999999899888999999
Q ss_pred EEeCCC-CCCC
Q 013955 410 ITSLVS-SGCV 419 (433)
Q Consensus 410 i~~~~~-~~~~ 419 (433)
|.|-.+ +.|+
T Consensus 416 i~~~~~~~~~~ 426 (427)
T PLN02533 416 LKSLLTEPGCN 426 (427)
T ss_pred EEeccCCCccC
Confidence 999975 8886
No 2
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-73 Score=546.00 Aligned_cols=378 Identities=43% Similarity=0.697 Sum_probs=325.0
Q ss_pred CCCCCCceEEEEecC-CCcEEEEEEcCCCCCCcEEEEeccCCCCC-----eeEEeeeeEEeeeeeecCeEEEEEeCCCCC
Q 013955 38 KPSSHPQQVHISLAG-DSHMRVTWITDDESSPSVVEYGTSPGGYN-----CGAEGESTSYRYLFYRSGKIHHTVIGPLEH 111 (433)
Q Consensus 38 ~~~~~p~qv~l~~~~-~~~~~i~W~t~~~~~~~~v~y~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p 111 (433)
..-..|+||||++++ .++|+|+|.|.+. ....|+|+....... ..+.+.+..+.+.....+++|+|+|++|+|
T Consensus 40 ~~~~~peQvhlS~~~~~~~m~VswvT~~~-~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~ 118 (452)
T KOG1378|consen 40 SVVNSPEQVHLSFTDNLNEMRVSWVTGDG-EENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEP 118 (452)
T ss_pred ccCCCCCeEEEeccCCCCcEEEEEeCCCC-CCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCC
Confidence 455679999999988 5599999999964 347899997754422 223333333333345789999999999999
Q ss_pred CCEEEEEeccc---CCeeEEECCCC-CCCeEEEEEecCCCCCChHHHHHHhhcC-CCceEEccccccccccch-hhHHHh
Q 013955 112 DTVYFYRCGRQ---GPEFEFKTPPA-QFPITFAVAGDLGQTGWTKSTLDHIGQC-KYDVHLLPGDLSYADYMQ-HRWDTF 185 (433)
Q Consensus 112 ~t~Y~Y~v~~~---s~~~~F~T~p~-~~~~~f~~~gD~~~~~~~~~~l~~i~~~-~pd~vl~~GD~~~~~~~~-~~w~~~ 185 (433)
+|+|+|+||++ |++|+|+|+|. ..+.+|+++||+|.......++...... ++|+||+.||++|+++.. .+||.|
T Consensus 119 ~t~YyY~~Gs~~~wS~~f~F~t~p~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f 198 (452)
T KOG1378|consen 119 NTRYYYQVGSDLKWSEIFSFKTPPGQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEF 198 (452)
T ss_pred CceEEEEeCCCCCcccceEeECCCCccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHH
Confidence 99999999984 68999999995 5899999999999988776777766544 599999999999999887 599999
Q ss_pred hhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC--CCChHH
Q 013955 186 GELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--DEYSDQ 263 (433)
Q Consensus 186 ~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~--~~~~~Q 263 (433)
.++++++++.+|+|++.||||.+..+. ..|..|.+||.||.++..+..+.||||++|++|||+|+|+.++ ....+|
T Consensus 199 ~r~vEp~As~vPymv~~GNHE~d~~~~--~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~Q 276 (452)
T KOG1378|consen 199 GRQVEPIASYVPYMVCSGNHEIDWPPQ--PCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQ 276 (452)
T ss_pred HhhhhhhhccCceEEecccccccCCCc--ccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchH
Confidence 999999999999999999999976554 2689999999999987777778999999999999999998875 346899
Q ss_pred HHHHHHHhhccccCCCCeEEEEecccccCCCCC-CCCCCh--hHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCcc-
Q 013955 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA-HQGEGD--GMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKP- 339 (433)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~~~~~--~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~- 339 (433)
.+||+++|+++++++.||+||+.|.|+|++... +..++. .++..|++||.+++||++|.||.|.|||++|++|.+.
T Consensus 277 Y~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~ 356 (452)
T KOG1378|consen 277 YQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCG 356 (452)
T ss_pred HHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceee
Confidence 999999999998865899999999999998874 444444 6788999999999999999999999999999998764
Q ss_pred ---------CCCccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEEEE
Q 013955 340 ---------DPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQLWI 410 (433)
Q Consensus 340 ---------~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f~i 410 (433)
++++++||++|+||+.+++. .+..++|+|++||+++|||++|++.|+||+.++++++.|+++++.|+|+|
T Consensus 357 ~~~~~~~~~d~~aPvyI~~G~~G~~e~~~-~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl 435 (452)
T KOG1378|consen 357 TGWGPVHLVDGMAPIYITVGDGGNHEHLD-PFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWL 435 (452)
T ss_pred ccCCcccccCCCCCEEEEEccCCcccccC-cccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEE
Confidence 78999999999999999875 45558899999999999999999999999999999998898999999999
Q ss_pred EeCCCCCCC
Q 013955 411 TSLVSSGCV 419 (433)
Q Consensus 411 ~~~~~~~~~ 419 (433)
.|+....|.
T Consensus 436 ~k~~~~~~~ 444 (452)
T KOG1378|consen 436 IKDYRDMVV 444 (452)
T ss_pred EcccCcccc
Confidence 999644333
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=4.8e-47 Score=365.40 Aligned_cols=275 Identities=48% Similarity=0.838 Sum_probs=218.5
Q ss_pred CCCeEEEEEecCCCC-CChHHHHHHhhc--CCCceEEccccccccccch--hhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 134 QFPITFAVAGDLGQT-GWTKSTLDHIGQ--CKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~-~~~~~~l~~i~~--~~pd~vl~~GD~~~~~~~~--~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
..++||+++||+|.. ...+.+++++.+ .+|||||++||++|+.+.. .+|+.|++.++++...+|+++++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 468999999999863 456778888876 7999999999999887654 68999999999998889999999999996
Q ss_pred CCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC---CCChHHHHHHHHHhhccccCCCCeEEEE
Q 013955 209 SIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY---DEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (433)
Q Consensus 209 ~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~---~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (433)
...... ....+..++.++........+.||+|++|++|||+|||.... ....+|++||+++|+++++++.+|+||+
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~ 160 (294)
T cd00839 82 YNFSFY-KIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVM 160 (294)
T ss_pred cCCCCc-ccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEE
Confidence 432210 011111122233222333457899999999999999998654 4579999999999999866566899999
Q ss_pred ecccccCCCCCCCC--CChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCc--------cCCCccEEEEECCCCCC
Q 013955 286 LHVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGK--------PDPCGAVYITIGDGGNK 355 (433)
Q Consensus 286 ~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~--------~~~~g~~yi~~G~gG~~ 355 (433)
+|+|+++....... .....++.|.+||++++|+++|+||+|.|+|+.|+++++ .+++|++||++|+||+.
T Consensus 161 ~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~ 240 (294)
T cd00839 161 GHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGND 240 (294)
T ss_pred eccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccc
Confidence 99999987653322 234678999999999999999999999999999998765 36789999999999998
Q ss_pred CcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEEEEEe
Q 013955 356 EGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQLWITS 412 (433)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f~i~~ 412 (433)
.+..... .+.++|++++...+||++|++.++|+|+++|+++.+|+ |+|+|+|+|
T Consensus 241 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~--v~D~f~i~k 294 (294)
T cd00839 241 EGLDPFS-APPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGV--VIDSFWIIK 294 (294)
T ss_pred cCcCccc-CCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCe--EEEEEEEeC
Confidence 7532111 23368899998999999999998889999999987775 999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=7.8e-36 Score=288.61 Aligned_cols=255 Identities=17% Similarity=0.224 Sum_probs=188.7
Q ss_pred CCCeEEEEEecCCCCCChHHHHHHh-----hcCCCceEEccccccccccc---hhhHHH-hhhhhhhhh--hCCCceecc
Q 013955 134 QFPITFAVAGDLGQTGWTKSTLDHI-----GQCKYDVHLLPGDLSYADYM---QHRWDT-FGELVQPLA--SARPWMVTQ 202 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~l~~i-----~~~~pd~vl~~GD~~~~~~~---~~~w~~-~~~~~~~l~--~~iP~~~v~ 202 (433)
...++|+++||+|.+...|..+++. ++.++||||.+||+++++.. +.+|+. |.+...... ..+||+.++
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vL 103 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVL 103 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeC
Confidence 7889999999999876666554432 36799999999999843322 456765 434443333 359999999
Q ss_pred CCCcCCCCCccccc-cc------------------ccccccccCCCCCCCCCCceEEE----Ee-------------CeE
Q 013955 203 GNHEKESIPLIMDA-FQ------------------SYNARWKMPFEESGSNSNLYYSF----DV-------------AGA 246 (433)
Q Consensus 203 GNHD~~~~~~~~~~-~~------------------~y~~~~~~p~~~~~~~~~~~ys~----~~-------------g~v 246 (433)
||||+.++..++-. +. ....||.||. .||.+ .. ..+
T Consensus 104 GNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~~~~v 175 (394)
T PTZ00422 104 GQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHKDMSV 175 (394)
T ss_pred CcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeeeecccccccccccCCCCEE
Confidence 99999776554321 11 1135788884 67754 21 238
Q ss_pred EEEEEcccCC-----C-CCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEE
Q 013955 247 HLIMLGSYAD-----Y-DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLV 320 (433)
Q Consensus 247 ~fi~lds~~~-----~-~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vdlv 320 (433)
.||++||... + .....|++||+++|+.+.+ .++|+||++|||+|+++. + +....+++.|+|||++|+||++
T Consensus 176 ~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k-~a~WkIVvGHhPIySsG~-h-g~~~~L~~~L~PLL~ky~VdlY 252 (394)
T PTZ00422 176 AFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPK-IADYIIVVGDKPIYSSGS-S-KGDSYLSYYLLPLLKDAQVDLY 252 (394)
T ss_pred EEEEEECchhcccCCccccCHHHHHHHHHHHHhhcc-CCCeEEEEecCceeecCC-C-CCCHHHHHHHHHHHHHcCcCEE
Confidence 9999999531 1 1247899999999976543 678999999999999875 2 3334578899999999999999
Q ss_pred EecCcccceeeeeccCCccCCCccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCC
Q 013955 321 LAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDD 400 (433)
Q Consensus 321 lsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g 400 (433)
|+||+|++|+.. .+|+.||++|+||...+. .. ...+++.|....+||+.+++ +.+.++++|++..+|
T Consensus 253 isGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~--~~--~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~G 319 (394)
T PTZ00422 253 ISGYDRNMEVLT--------DEGTAHINCGSGGNSGRK--SI--MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTG 319 (394)
T ss_pred EEccccceEEec--------CCCceEEEeCccccccCC--CC--CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCC
Confidence 999999999975 358999999999876432 11 22455788888999999997 456899999974567
Q ss_pred CCeeeeEEEEEeCC
Q 013955 401 EPVRSDQLWITSLV 414 (433)
Q Consensus 401 ~~~v~d~f~i~~~~ 414 (433)
+ +++++++.+..
T Consensus 320 k--vL~~~~~~~~~ 331 (394)
T PTZ00422 320 E--VLYTHKQPLKK 331 (394)
T ss_pred c--EEEEeeecccc
Confidence 6 99999997763
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=1.4e-33 Score=269.34 Aligned_cols=241 Identities=22% Similarity=0.373 Sum_probs=173.1
Q ss_pred eEEEEEecCCCC-CChHH-H---HH-HhhcCCCceEEccccccccccc----hhhH-HHhhhhhhhhhhCCCceeccCCC
Q 013955 137 ITFAVAGDLGQT-GWTKS-T---LD-HIGQCKYDVHLLPGDLSYADYM----QHRW-DTFGELVQPLASARPWMVTQGNH 205 (433)
Q Consensus 137 ~~f~~~gD~~~~-~~~~~-~---l~-~i~~~~pd~vl~~GD~~~~~~~----~~~w-~~~~~~~~~l~~~iP~~~v~GNH 205 (433)
++|+++||+|.. ...+. + +. .+++.+|||||++||++|.++. ...| +.|.+.+..+...+|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 489999999976 23222 2 22 2235799999999999987754 1234 33445555444569999999999
Q ss_pred cCCCCCcccccccc--cccccccCCCCCCCCCCceEEEEeC------eEEEEEEcccCCC---------------CCChH
Q 013955 206 EKESIPLIMDAFQS--YNARWKMPFEESGSNSNLYYSFDVA------GAHLIMLGSYADY---------------DEYSD 262 (433)
Q Consensus 206 D~~~~~~~~~~~~~--y~~~~~~p~~~~~~~~~~~ys~~~g------~v~fi~lds~~~~---------------~~~~~ 262 (433)
|..........+.. +..+|.+| ..||+|+++ +++||+|||.... ....+
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEE 152 (277)
T ss_pred ccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHH
Confidence 99643221111111 12333333 578999988 7999999996431 13589
Q ss_pred HHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCC
Q 013955 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPC 342 (433)
Q Consensus 263 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~ 342 (433)
|++||+++|++++ .+|+||++|||+++.... ......++.|.+++++++|+++|+||.|.+++..+. ..
T Consensus 153 Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~--~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~------~~ 221 (277)
T cd07378 153 QLAWLEKTLAAST---ADWKIVVGHHPIYSSGEH--GPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDD------GS 221 (277)
T ss_pred HHHHHHHHHHhcC---CCeEEEEeCccceeCCCC--CCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecC------CC
Confidence 9999999999874 379999999999876532 122457889999999999999999999999988641 35
Q ss_pred ccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEe
Q 013955 343 GAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRN 397 (433)
Q Consensus 343 g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~ 397 (433)
++.||++|+||...+.........|.|..++...+||.+|+|.. ++++++|++.
T Consensus 222 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~~ 275 (277)
T cd07378 222 GTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYDA 275 (277)
T ss_pred CcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEECC
Confidence 99999999998876542222222345778888899999999965 5799999974
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=8.5e-29 Score=234.37 Aligned_cols=227 Identities=19% Similarity=0.284 Sum_probs=161.3
Q ss_pred CCCeEEEEEecCCCCC---C--------------hHHHHHHhhcC--CCceEEccccccccccch----hhHHHhhhhhh
Q 013955 134 QFPITFAVAGDLGQTG---W--------------TKSTLDHIGQC--KYDVHLLPGDLSYADYMQ----HRWDTFGELVQ 190 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~---~--------------~~~~l~~i~~~--~pd~vl~~GD~~~~~~~~----~~w~~~~~~~~ 190 (433)
+++++|++++|+|.+. . .+.+++.+.+. +||+||++||+++.+... .+|+.+.+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 4689999999998762 1 12344555555 999999999999876542 34556666666
Q ss_pred hhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC------CCChHHH
Q 013955 191 PLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY------DEYSDQY 264 (433)
Q Consensus 191 ~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~------~~~~~Q~ 264 (433)
.+...+|+++++||||....+. ...+..|...| +..||++++|+++||+|||.... ....+|+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~-~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql 150 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT-EESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQD 150 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC-hhHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHHH
Confidence 6655699999999999954322 11122232222 24688999999999999996432 2347999
Q ss_pred HHHHHHhhccccCCCCeEEEEecccccCCCCCCC----CCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccC
Q 013955 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ----GEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPD 340 (433)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~ 340 (433)
+||+++|+++++.+.+++||++|+|++....... ......++.|.++|++++|+++||||+|.+.+..
T Consensus 151 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~-------- 222 (262)
T cd07395 151 VWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR-------- 222 (262)
T ss_pred HHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE--------
Confidence 9999999998633456899999999986443211 1123567899999999999999999999987643
Q ss_pred CCccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEE
Q 013955 341 PCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHR 396 (433)
Q Consensus 341 ~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~ 396 (433)
-+|+.|++++++|... . ....||..+++.. +.++++|++
T Consensus 223 ~~g~~~~~~~~~~~~~------~----------~~~~g~~~~~v~~-~~~~~~~~~ 261 (262)
T cd07395 223 YGGLEMVVTSAIGAQL------G----------NDKSGLRIVKVTE-DKIVHEYYS 261 (262)
T ss_pred ECCEEEEEcCceeccc------C----------CCCCCcEEEEECC-Cceeeeeee
Confidence 2478888887776431 1 1247999999954 457888875
No 7
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.2e-29 Score=221.61 Aligned_cols=264 Identities=20% Similarity=0.325 Sum_probs=174.3
Q ss_pred EEECCCC-CCCeEEEEEecCCCCCC-hHHHHH----Hh-hcCCCceEEccccccccccchhhHH----H-hhhhhhhhhh
Q 013955 127 EFKTPPA-QFPITFAVAGDLGQTGW-TKSTLD----HI-GQCKYDVHLLPGDLSYADYMQHRWD----T-FGELVQPLAS 194 (433)
Q Consensus 127 ~F~T~p~-~~~~~f~~~gD~~~~~~-~~~~l~----~i-~~~~pd~vl~~GD~~~~~~~~~~w~----~-~~~~~~~l~~ 194 (433)
++.-|+. ++.++|+++||+|..+. .+..++ .| +..++||||.+||++|.++.....| . |.+....-.-
T Consensus 33 ~l~~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSL 112 (336)
T KOG2679|consen 33 RLYDPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSL 112 (336)
T ss_pred hhcCCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCccc
Confidence 3444444 68899999999986543 333222 22 3679999999999999988743333 2 2222211112
Q ss_pred CCCceeccCCCcCCCCCccccc--ccccccccccCCCCCCCCCCceEE----EE--eCeEEEEEEcccCC-------CC-
Q 013955 195 ARPWMVTQGNHEKESIPLIMDA--FQSYNARWKMPFEESGSNSNLYYS----FD--VAGAHLIMLGSYAD-------YD- 258 (433)
Q Consensus 195 ~iP~~~v~GNHD~~~~~~~~~~--~~~y~~~~~~p~~~~~~~~~~~ys----~~--~g~v~fi~lds~~~-------~~- 258 (433)
+.|||.++||||+.++-.++-. +.....||..|. .+|. .+ .-++.++++|+... +.
T Consensus 113 QkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~ 184 (336)
T KOG2679|consen 113 QKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRG 184 (336)
T ss_pred ccchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheeccccccccccc
Confidence 3799999999999887654433 455566776663 2221 11 11234444444211 11
Q ss_pred ------CChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 259 ------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 259 ------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
....++.||+..|+++ .++|+||++|||+.+.+ +.+...++.+.|.|+|++++||++++||+|+.|...
T Consensus 185 v~PR~~~~~~~l~~le~~L~~S---~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis 259 (336)
T KOG2679|consen 185 VLPRVKYLRALLSWLEVALKAS---RAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYINGHDHCLQHIS 259 (336)
T ss_pred CChHHHHHHHHHHHHHHHHHHh---hcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhcc
Confidence 1268899999999998 67899999999998765 346667899999999999999999999999999875
Q ss_pred eccCCccCCCccEEEEECCCCCCCcccccCC-CCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEEEEE
Q 013955 333 RVNNGKPDPCGAVYITIGDGGNKEGLARKYK-NPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQLWIT 411 (433)
Q Consensus 333 ~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~-~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f~i~ 411 (433)
.. ..++-|+++|+|..... ..+.. .-.|+.-.|.-..-||..+++. ...+++.|++. .|+ ++.+....
T Consensus 260 ~~------e~~iqf~tSGagSkaw~-g~~~~~~~~p~~lkF~YdgqGfmsv~is-~~e~~vvfyD~-~G~--~Lhk~~t~ 328 (336)
T KOG2679|consen 260 SP------ESGIQFVTSGAGSKAWR-GTDHNPEVNPKELKFYYDGQGFMSVEIS-HSEARVVFYDV-SGK--VLHKWSTS 328 (336)
T ss_pred CC------CCCeeEEeeCCcccccC-CCccCCccChhheEEeeCCCceEEEEEe-cceeEEEEEec-cCc--eEEEeecc
Confidence 31 34677787777654321 11111 1123323344446699999985 46799999974 465 88887665
Q ss_pred eCC
Q 013955 412 SLV 414 (433)
Q Consensus 412 ~~~ 414 (433)
|+.
T Consensus 329 kr~ 331 (336)
T KOG2679|consen 329 KRS 331 (336)
T ss_pred ccc
Confidence 553
No 8
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.93 E-value=7.3e-24 Score=215.66 Aligned_cols=293 Identities=20% Similarity=0.263 Sum_probs=149.4
Q ss_pred eecCeEEEEEeCCCCCCCEEEEEecc-----cCCeeEEECCCC--CCCeEEEEEecCCCCCChHHHHHHhhc-CCCceEE
Q 013955 96 YRSGKIHHTVIGPLEHDTVYFYRCGR-----QGPEFEFKTPPA--QFPITFAVAGDLGQTGWTKSTLDHIGQ-CKYDVHL 167 (433)
Q Consensus 96 ~~~~~~~~v~l~~L~p~t~Y~Y~v~~-----~s~~~~F~T~p~--~~~~~f~~~gD~~~~~~~~~~l~~i~~-~~pd~vl 167 (433)
....+.+++.|+||+|+|.|+||+.. .+..++|||+|. ..++||++++|.+.......+++.+.+ .+|||+|
T Consensus 58 ~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 58 AERDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GGGTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-----EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred cCCCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 35679999999999999999999875 357899999986 357999999999765445678888887 6999999
Q ss_pred ccccccccccc---------------------------hhhHHHh--hhhhhhhhhCCCceeccCCCcCCCCCccc----
Q 013955 168 LPGDLSYADYM---------------------------QHRWDTF--GELVQPLASARPWMVTQGNHEKESIPLIM---- 214 (433)
Q Consensus 168 ~~GD~~~~~~~---------------------------~~~w~~~--~~~~~~l~~~iP~~~v~GNHD~~~~~~~~---- 214 (433)
++||.+|.+.. ...|..+ ...++.+.+.+|++.++.+||+.++....
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 99999998752 0011111 12345566779999999999996443210
Q ss_pred -------------ccccccccccccCCCC---CCCCCCceEEEEeCe-EEEEEEcccCCCC-------------------
Q 013955 215 -------------DAFQSYNARWKMPFEE---SGSNSNLYYSFDVAG-AHLIMLGSYADYD------------------- 258 (433)
Q Consensus 215 -------------~~~~~y~~~~~~p~~~---~~~~~~~~ys~~~g~-v~fi~lds~~~~~------------------- 258 (433)
..+..|... +|... .+.....|++|.+|+ +.|++||+.....
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~ 295 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSR 295 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT-
T ss_pred ccccccchHHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCcc
Confidence 011122111 22210 112346788999999 9999999953211
Q ss_pred --CChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCC-----------CCCCChhHHHHHHHHHHHcCCc--EEEec
Q 013955 259 --EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA-----------HQGEGDGMMAIMEPLLYAASVD--LVLAG 323 (433)
Q Consensus 259 --~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~Vd--lvlsG 323 (433)
.+.+|++||++.|+++ .++|+|+..-.|+...... ....-...|+.|.++|.+.++. ++|+|
T Consensus 296 ~mLG~~Q~~wL~~~L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSG 372 (453)
T PF09423_consen 296 TMLGEEQWDWLEDWLASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSG 372 (453)
T ss_dssp -SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-
T ss_pred CcCCHHHHHHHHHHHhcC---CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEec
Confidence 2689999999999987 4789999998887543321 0111135789999999988764 89999
Q ss_pred CcccceeeeeccCCcc--CCC-c-cEEEEECCCCCCCc---c----cccCCCCCCCcceeEeccccEEEEEEEcCceEEE
Q 013955 324 HVHAYERSIRVNNGKP--DPC-G-AVYITIGDGGNKEG---L----ARKYKNPQPDWSVFREASFGHGELKIVNSTHAFW 392 (433)
Q Consensus 324 H~H~y~r~~~~~~~~~--~~~-g-~~yi~~G~gG~~~~---~----~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~ 392 (433)
+.|.........+... ... . .+-+++++-.+... . ...+....|.........+||..|++.. ..++.
T Consensus 373 DvH~~~~~~~~~~~~~~~~~~~~~~~Ef~~s~vts~~~~~~~~~~~~~~~~~~np~~~~~~~~~~G~~~i~~~~-~~~~~ 451 (453)
T PF09423_consen 373 DVHASAASRIPPDDADPPDGPGSVGVEFTSSSVTSPGFGLGTSPALDRALDKANPHLKFADLRNFGYVEIDITP-ERVTA 451 (453)
T ss_dssp SSSSEEEEEEESSTT---TTS-EEEEEEE---SSTT-S-BSB-TTHHH-HHHH-TTEEEEE-B-EEEEEEEEET-TEEEE
T ss_pred CcchheeeecccccccccCCCCCeEEEEECCCccCCCcccccchhhhhhhhhcCCceEEeECCCCcEEEEEEcc-ceEEE
Confidence 9999765543322211 111 1 22344443222111 0 0001112343233344689999999865 46777
Q ss_pred EE
Q 013955 393 SW 394 (433)
Q Consensus 393 ~~ 394 (433)
+|
T Consensus 452 ~~ 453 (453)
T PF09423_consen 452 EW 453 (453)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.93 E-value=1.2e-24 Score=203.20 Aligned_cols=217 Identities=23% Similarity=0.267 Sum_probs=150.1
Q ss_pred EEEEEecCCCCCCh-------------HHHHHHhhcC--CCceEEccccccccccchhhHHHhhhhhhhhhhCCCceecc
Q 013955 138 TFAVAGDLGQTGWT-------------KSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQ 202 (433)
Q Consensus 138 ~f~~~gD~~~~~~~-------------~~~l~~i~~~--~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~ 202 (433)
||++++|+|.+... +++++.+.+. +||+||++||+++.... ..|+.+.+.++.+ .+|++.++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~-~~~~~~~~~l~~~--~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP-ESYERLRELLAAL--PIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH-HHHHHHHHHHhhc--CCCEEEeC
Confidence 68999999976431 3455555555 99999999999987553 4566666666655 59999999
Q ss_pred CCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC----CCChHHHHHHHHHhhccccCC
Q 013955 203 GNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWLKDDLSKVDRKK 278 (433)
Q Consensus 203 GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~----~~~~~Q~~WL~~~L~~~~~~~ 278 (433)
||||... .+ ...+.... ...+..+|+|+.++++|++||+.... ....+|++||++.|++..
T Consensus 78 GNHD~~~------~~---~~~~~~~~---~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~--- 142 (240)
T cd07402 78 GNHDDRA------AM---RAVFPELP---PAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP--- 142 (240)
T ss_pred CCCCCHH------HH---HHhhcccc---ccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---
Confidence 9999842 11 11221110 01235688999999999999986432 135789999999999874
Q ss_pred CCeEEEEecccccCCCCCCC-CCChhHHHHHHHHHHHc-CCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCCC
Q 013955 279 TPWLLVLLHVPWYNSNEAHQ-GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKE 356 (433)
Q Consensus 279 ~~~~iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~ 356 (433)
.+++|+++|+|++....... ......++.+.+++.++ +|+++|+||.|...... -+|+.++++|+.|...
T Consensus 143 ~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~--------~~g~~~~~~gs~~~~~ 214 (240)
T cd07402 143 DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS--------WGGIPLLTAPSTCHQF 214 (240)
T ss_pred CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--------ECCEEEEEcCcceeee
Confidence 23589999999876543111 11112468899999999 99999999999976554 2588889988877642
Q ss_pred cccccCCCCCCCcceeEeccccEEEEEEEcC
Q 013955 357 GLARKYKNPQPDWSVFREASFGHGELKIVNS 387 (433)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~ 387 (433)
....+. ..+.+..+||..+.+.++
T Consensus 215 ------~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (240)
T cd07402 215 ------APDLDD-FALDALAPGYRALSLHED 238 (240)
T ss_pred ------cCCCCc-ccccccCCCCcEEEEecC
Confidence 222222 333345689988887543
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.92 E-value=1.8e-24 Score=205.10 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=134.0
Q ss_pred eEEEEEecCCCCCC--------------hHHHHHHhhcCCCceEEccccccccccc--hhhHHHhhhhhhhhhhCCCcee
Q 013955 137 ITFAVAGDLGQTGW--------------TKSTLDHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASARPWMV 200 (433)
Q Consensus 137 ~~f~~~gD~~~~~~--------------~~~~l~~i~~~~pd~vl~~GD~~~~~~~--~~~w~~~~~~~~~l~~~iP~~~ 200 (433)
|||++++|+|.... ..++++.+++.+||+||++||+++.+.. ...|+.+.+.+..+ .+|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l--~~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRL--KGPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhc--CCCEEE
Confidence 69999999995432 1345666767789999999999976553 13455555555444 389999
Q ss_pred ccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC------------------------
Q 013955 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------------------------ 256 (433)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~------------------------ 256 (433)
++||||...... .+.. . .. ....+..||+|++++++||+||+...
T Consensus 79 v~GNHD~~~~~~------~~~~-~-~~---~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T cd07396 79 VLGNHDLYNPSR------EYLL-L-YT---LLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLY 147 (267)
T ss_pred ecCccccccccH------hhhh-c-cc---ccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhh
Confidence 999999964211 0110 0 00 01124579999999999999999531
Q ss_pred ----------CCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCcEEEecCc
Q 013955 257 ----------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHV 325 (433)
Q Consensus 257 ----------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~VdlvlsGH~ 325 (433)
.....+|++||+++|+++..+ ..++||++|+|++...... ......++.+.++++++ +|+++|+||+
T Consensus 148 ~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~-~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v~~GH~ 225 (267)
T cd07396 148 LSEPRFVDWNGGIGEEQLQWLRNELQEADAN-GEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKACISGHD 225 (267)
T ss_pred ccCccceeccCcCCHHHHHHHHHHHHHHHhc-CCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEEEcCCc
Confidence 123479999999999987542 2458999999987654311 11112357889999996 7999999999
Q ss_pred ccceeeeeccCCccCCCccEEEEECCC
Q 013955 326 HAYERSIRVNNGKPDPCGAVYITIGDG 352 (433)
Q Consensus 326 H~y~r~~~~~~~~~~~~g~~yi~~G~g 352 (433)
|.+.... .+|+.|+++|+-
T Consensus 226 H~~~~~~--------~~gi~~~~~~a~ 244 (267)
T cd07396 226 HEGGYAQ--------RHGIHFLTLEGM 244 (267)
T ss_pred CCCCccc--------cCCeeEEEechh
Confidence 9987543 358889988764
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.92 E-value=2.1e-23 Score=198.70 Aligned_cols=238 Identities=19% Similarity=0.186 Sum_probs=151.0
Q ss_pred EECCCC-CCCeEEEEEecCCCCCC-------------hHHHHHHhhc--CCCceEEccccccccccchhhHHHhhhhhhh
Q 013955 128 FKTPPA-QFPITFAVAGDLGQTGW-------------TKSTLDHIGQ--CKYDVHLLPGDLSYADYMQHRWDTFGELVQP 191 (433)
Q Consensus 128 F~T~p~-~~~~~f~~~gD~~~~~~-------------~~~~l~~i~~--~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~ 191 (433)
.++.+. ..+++|++++|+|.... .+++++.+++ .+|||||++||+++.+. ...++.+.+.++.
T Consensus 5 ~~~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~~l~~ 83 (275)
T PRK11148 5 LTLPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAEGIAP 83 (275)
T ss_pred cccccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHHHHhh
Confidence 456554 57899999999996321 1344555543 47999999999998654 3456666666655
Q ss_pred hhhCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC----CCChHHHHHH
Q 013955 192 LASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWL 267 (433)
Q Consensus 192 l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~----~~~~~Q~~WL 267 (433)
+ .+|++.++||||... .+..+.....+ ...++.+..++++||+|||.... ..+.+|++||
T Consensus 84 l--~~Pv~~v~GNHD~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL 147 (275)
T PRK11148 84 L--RKPCVWLPGNHDFQP------AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWL 147 (275)
T ss_pred c--CCcEEEeCCCCCChH------HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHH
Confidence 5 389999999999842 11111111111 11233344556999999996422 2358999999
Q ss_pred HHHhhccccCCCCeEEEEecccccCCCCCCC-CCChhHHHHHHHHHHHc-CCcEEEecCcccceeeeeccCCccCCCccE
Q 013955 268 KDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ-GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAV 345 (433)
Q Consensus 268 ~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~ 345 (433)
+++|++.+. +..||+.|||+......+. .......+.|.++++++ +|+++|+||+|...... -+|+.
T Consensus 148 ~~~L~~~~~---~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~--------~~gi~ 216 (275)
T PRK11148 148 ERKLADAPE---RHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD--------WNGRR 216 (275)
T ss_pred HHHHhhCCC---CCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce--------ECCEE
Confidence 999998743 2356666665544332211 11122457899999998 89999999999864332 25888
Q ss_pred EEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCC
Q 013955 346 YITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDD 400 (433)
Q Consensus 346 yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g 400 (433)
++++++.+.. +....+.+ .+.....||..+++.++..+..+.++.+.+
T Consensus 217 ~~~~ps~~~q------~~~~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~ 264 (275)
T PRK11148 217 LLATPSTCVQ------FKPHCTNF-TLDTVAPGWRELELHADGSLETEVHRLADT 264 (275)
T ss_pred EEEcCCCcCC------cCCCCCcc-ccccCCCcEEEEEEcCCCcEEEEEEEcCCC
Confidence 8877765532 11111121 122335799999997666687777776543
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=3.4e-22 Score=187.93 Aligned_cols=186 Identities=17% Similarity=0.226 Sum_probs=124.5
Q ss_pred EEEEecCCCCCCh--------HHHHHHhhcCCCceEEcccccccccc--------chhhHHHhhhhhhhhhh--CCCcee
Q 013955 139 FAVAGDLGQTGWT--------KSTLDHIGQCKYDVHLLPGDLSYADY--------MQHRWDTFGELVQPLAS--ARPWMV 200 (433)
Q Consensus 139 f~~~gD~~~~~~~--------~~~l~~i~~~~pd~vl~~GD~~~~~~--------~~~~w~~~~~~~~~l~~--~iP~~~ 200 (433)
|+.++|+|.+... ..+++.+++.+||++|++||+++... ...+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899999876542 12345667889999999999997543 13467777776654432 489999
Q ss_pred ccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEE--EeCeEEEEEEcccCC----------CCCChHHHHHHH
Q 013955 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSF--DVAGAHLIMLGSYAD----------YDEYSDQYRWLK 268 (433)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~--~~g~v~fi~lds~~~----------~~~~~~Q~~WL~ 268 (433)
++||||..+..........|.+..... .....+|.+ ..|+++||+|||... ....++|++||+
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~-----~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~ 156 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATG-----RDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLE 156 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheec-----CCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHH
Confidence 999999965432111111122111111 001233333 358999999999642 123589999999
Q ss_pred HHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeecc
Q 013955 269 DDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVN 335 (433)
Q Consensus 269 ~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~ 335 (433)
+.|+++.+ .+++||++|+|+....... .. ....+.++|++++|+++||||.|.+++..|+.
T Consensus 157 ~~L~~~~~--~~~~IV~~HhP~~~~~~~~---~~-~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 157 KELEKSTN--SNYTIWFGHYPTSTIISPS---AK-SSSKFKDLLKKYNVTAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHhccc--CCeEEEEEcccchhccCCC---cc-hhHHHHHHHHhcCCcEEEeCCccCCCcceeee
Confidence 99998643 3579999999986532211 11 22239999999999999999999999866653
No 13
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.5e-21 Score=185.39 Aligned_cols=279 Identities=24% Similarity=0.327 Sum_probs=183.7
Q ss_pred ceEEEEecC-CCcEEEEEEcCC-C------CCCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEE
Q 013955 44 QQVHISLAG-DSHMRVTWITDD-E------SSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVY 115 (433)
Q Consensus 44 ~qv~l~~~~-~~~~~i~W~t~~-~------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y 115 (433)
.+.-|+.++ ...-.|.|..-. . +.+..+|+.+.++..+.+..+.... .....+.+++.++||+|++.|
T Consensus 39 F~~GVaSGDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~~~y 114 (522)
T COG3540 39 FTHGVASGDPTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPDQDY 114 (522)
T ss_pred cccccccCCCCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCCceE
Confidence 455456555 334445665432 1 3445677777765444443333211 135578999999999999999
Q ss_pred EEEecc---cCCeeEEECCCC-CCCeEEEEEecCCCCCC---hHHHHHHhhcCCCceEEccccccccccchhh------H
Q 013955 116 FYRCGR---QGPEFEFKTPPA-QFPITFAVAGDLGQTGW---TKSTLDHIGQCKYDVHLLPGDLSYADYMQHR------W 182 (433)
Q Consensus 116 ~Y~v~~---~s~~~~F~T~p~-~~~~~f~~~gD~~~~~~---~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~------w 182 (433)
+||+.. .+.+++|||+|+ ...++|+.++|.....+ .-.+.+.|.+.+|||+||+||.+|+.+.... |
T Consensus 115 fYRf~~~~~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~ 194 (522)
T COG3540 115 FYRFKAGDERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSW 194 (522)
T ss_pred EEEEeeCCccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCcccccccccc
Confidence 999865 368899999997 56788888888755544 3467788889999999999999998765211 1
Q ss_pred ----------------HHhh---------hhhhhhhhCCCceeccCCCcCCCCCcc--cc--------cc-----ccccc
Q 013955 183 ----------------DTFG---------ELVQPLASARPWMVTQGNHEKESIPLI--MD--------AF-----QSYNA 222 (433)
Q Consensus 183 ----------------~~~~---------~~~~~l~~~iP~~~v~GNHD~~~~~~~--~~--------~~-----~~y~~ 222 (433)
+.+. +-++......||++.+.+||..++-.. .+ .+ .+++.
T Consensus 195 ~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qA 274 (522)
T COG3540 195 KNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQA 274 (522)
T ss_pred cccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHH
Confidence 1111 123334456999999999999654211 00 01 11222
Q ss_pred cc-ccCCCCCC--CCCCceEEEEeCe-EEEEEEcccCCC------C----------------CChHHHHHHHHHhhcccc
Q 013955 223 RW-KMPFEESG--SNSNLYYSFDVAG-AHLIMLGSYADY------D----------------EYSDQYRWLKDDLSKVDR 276 (433)
Q Consensus 223 ~~-~~p~~~~~--~~~~~~ys~~~g~-v~fi~lds~~~~------~----------------~~~~Q~~WL~~~L~~~~~ 276 (433)
++ .||-.... .....|-+|.||+ +.|.+||+.... + .+..|.+||+..|..+
T Consensus 275 yyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~S-- 352 (522)
T COG3540 275 YYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGAS-- 352 (522)
T ss_pred HHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhhc--
Confidence 21 24432211 1247888999999 579999985432 1 2689999999999997
Q ss_pred CCCCeEEEEecccccC----CC---CCC----CC-C-ChhHHHHHHHHHHHcCCc--EEEecCcccce
Q 013955 277 KKTPWLLVLLHVPWYN----SN---EAH----QG-E-GDGMMAIMEPLLYAASVD--LVLAGHVHAYE 329 (433)
Q Consensus 277 ~~~~~~iv~~H~P~~~----~~---~~~----~~-~-~~~~~~~l~~l~~~~~Vd--lvlsGH~H~y~ 329 (433)
++.|+|+..-.|+-. .. .+. .+ + -...|+.|+.++...++. ++|+|.+|...
T Consensus 353 -katWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 353 -KATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred -chhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHH
Confidence 778999988887621 11 000 01 1 124688999999998765 89999999753
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.86 E-value=4.8e-21 Score=175.37 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=111.4
Q ss_pred eEEEEEecCCCCCCh---------HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhh-hCCCceeccCCCc
Q 013955 137 ITFAVAGDLGQTGWT---------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA-SARPWMVTQGNHE 206 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~---------~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~-~~iP~~~v~GNHD 206 (433)
|||++++|+|..... +.+++.+.+.+||+||++||+++.+....+|+.+.+.++.+. ..+|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 689999999864331 223344456789999999999987764568888888888886 4699999999999
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEe
Q 013955 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (433)
Q Consensus 207 ~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (433)
. ++.+|+. ...+|++||+++|++.+. +++||++
T Consensus 81 ~----------------------------------------~~~ld~~----~~~~ql~WL~~~L~~~~~---~~~iv~~ 113 (214)
T cd07399 81 L----------------------------------------VLALEFG----PRDEVLQWANEVLKKHPD---RPAILTT 113 (214)
T ss_pred c----------------------------------------hhhCCCC----CCHHHHHHHHHHHHHCCC---CCEEEEe
Confidence 3 1222221 248999999999998642 3589999
Q ss_pred cccccCCCCCCCCC-----ChhHHHHHHHHHHHc-CCcEEEecCcccceeeee
Q 013955 287 HVPWYNSNEAHQGE-----GDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIR 333 (433)
Q Consensus 287 H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~ 333 (433)
|+|++......... .....+.|.++++++ +|+++|+||.|.+.+...
T Consensus 114 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 114 HAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred cccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 99998654322111 123456788999999 799999999999877653
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.82 E-value=1.5e-19 Score=174.25 Aligned_cols=188 Identities=22% Similarity=0.296 Sum_probs=124.3
Q ss_pred EEecCCCCCC---hHHHHHHhhcC--CCceEEccccccccccchh--------hHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 141 VAGDLGQTGW---TKSTLDHIGQC--KYDVHLLPGDLSYADYMQH--------RWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 141 ~~gD~~~~~~---~~~~l~~i~~~--~pd~vl~~GD~~~~~~~~~--------~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
-+|+.+.... .+.+++.+++. +|||||++||++..+.... .+..+.+.++.....+|+++++||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 4555554332 34567777765 9999999999998765421 134445555555567999999999999
Q ss_pred CCCCccc------ccccccccccc--cCCCCC-CCCCCceEEEE-eCeEEEEEEcccCCC-----------CCChHHHHH
Q 013955 208 ESIPLIM------DAFQSYNARWK--MPFEES-GSNSNLYYSFD-VAGAHLIMLGSYADY-----------DEYSDQYRW 266 (433)
Q Consensus 208 ~~~~~~~------~~~~~y~~~~~--~p~~~~-~~~~~~~ys~~-~g~v~fi~lds~~~~-----------~~~~~Q~~W 266 (433)
....... ..+..+...|. ++.+.. ....+.||++. .++++||+|||.... ....+|++|
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~W 201 (296)
T cd00842 122 YPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQW 201 (296)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHH
Confidence 6432110 11111222221 221110 11246789988 889999999996422 124789999
Q ss_pred HHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcC--CcEEEecCcccceeee
Q 013955 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAYERSI 332 (433)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y~r~~ 332 (433)
|+++|+++++++ ..++|++|+|+....... .....+.|.+++++|+ |.++|+||+|..+...
T Consensus 202 L~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 202 LEDELQEAEQAG-EKVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHHHHHCC-CeEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 999999986533 348899999987653321 1246789999999997 7789999999876543
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.77 E-value=1.2e-17 Score=156.42 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=108.6
Q ss_pred HHHHHhh-cCCCceEEccccccccccc--hhhHHH----hhhhhhhhhhCCCceeccCCCcCCCCCcc-ccccccccccc
Q 013955 153 STLDHIG-QCKYDVHLLPGDLSYADYM--QHRWDT----FGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARW 224 (433)
Q Consensus 153 ~~l~~i~-~~~pd~vl~~GD~~~~~~~--~~~w~~----~~~~~~~l~~~iP~~~v~GNHD~~~~~~~-~~~~~~y~~~~ 224 (433)
+.++.+. ..+||+||++||+++.+.. ..+|.. |.+.+.++...+|++.++||||+...... ......|.+.|
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~F 114 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYF 114 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHh
Confidence 3344443 5689999999999987543 234532 33333333234799999999998532211 01223344444
Q ss_pred ccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC-----CCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCC
Q 013955 225 KMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY-----DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG 299 (433)
Q Consensus 225 ~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 299 (433)
. ..++++++|+++||+||+.... ....+|.+||++.|+.... ..+ +||++|+|+|.......+
T Consensus 115 g----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~p-~ILl~H~Plyr~~~~~cg 182 (257)
T cd08163 115 G----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SKP-RILLTHVPLYRPPNTSCG 182 (257)
T ss_pred C----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CCc-EEEEeccccccCCCCCCC
Confidence 2 3468899999999999996421 2346799999999987643 333 899999999865432111
Q ss_pred ---C---------Ch----h-HHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 300 ---E---------GD----G-MMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 300 ---~---------~~----~-~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
+ +. . ..+.-..||++.++.+||+||+|.|-...
T Consensus 183 ~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 183 PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 0 00 0 12344477788899999999999985543
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.75 E-value=1.3e-18 Score=152.48 Aligned_cols=188 Identities=22% Similarity=0.176 Sum_probs=102.2
Q ss_pred eEEEEEecCCCCCChH-----HHHHHhhcCCCceEEccccccccccchhhHHHhh-hhhhhhhhCCCceeccCCCcCCCC
Q 013955 137 ITFAVAGDLGQTGWTK-----STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFG-ELVQPLASARPWMVTQGNHEKESI 210 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~~-----~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~-~~~~~l~~~iP~~~v~GNHD~~~~ 210 (433)
+||+++||+|...... .........++|+||++||+++.+.....+.... .........+|+++++||||+...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 6999999999775432 2333445889999999999999887644443322 122334456999999999999532
Q ss_pred Cccccccccccccc-ccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCC---hHHHHHHHHHhhccccCCCCeEEEEe
Q 013955 211 PLIMDAFQSYNARW-KMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEY---SDQYRWLKDDLSKVDRKKTPWLLVLL 286 (433)
Q Consensus 211 ~~~~~~~~~y~~~~-~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~---~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (433)
.... ......... .................................... ..++.|+...++.. ..+++||++
T Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~~ 156 (200)
T PF00149_consen 81 NSFY-GFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAK---NDDPVIVFT 156 (200)
T ss_dssp HHHH-HHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEE---EESEEEEEE
T ss_pred cccc-ccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccc---cccceeEEE
Confidence 1100 000000000 000000000000001111111222222111111111 23333333343332 456899999
Q ss_pred cccccCCCCCCCC--CChhHHHHHHHHHHHcCCcEEEecCcccc
Q 013955 287 HVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (433)
Q Consensus 287 H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 328 (433)
|+|++........ .....++.+..++++++|+++|+||+|.|
T Consensus 157 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 157 HHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp SSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999876543211 11246789999999999999999999986
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.73 E-value=6.5e-17 Score=150.02 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=116.6
Q ss_pred EEEecCCCCC--------Ch---HHHHHHhhcC------CCceEEccccccccccchhhHHHhhhhhhhhhhCCCceecc
Q 013955 140 AVAGDLGQTG--------WT---KSTLDHIGQC------KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQ 202 (433)
Q Consensus 140 ~~~gD~~~~~--------~~---~~~l~~i~~~------~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~ 202 (433)
.+++|+|... .. ++.++.+.+. +||+||++||+++.... .......+.++.+ ..|+++|+
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~-~~~~~~l~~l~~l--~~~v~~V~ 78 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL-EEAKLDLAWIDAL--PGTKVLLK 78 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh-HHHHHHHHHHHhC--CCCeEEEe
Confidence 5789998662 22 3444544433 99999999999864432 2222222233332 25789999
Q ss_pred CCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC----C-------------CCChHHHH
Q 013955 203 GNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD----Y-------------DEYSDQYR 265 (433)
Q Consensus 203 GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~----~-------------~~~~~Q~~ 265 (433)
||||+... ....+.+.+ +.. +.......++.++++.|++++.... . .....|++
T Consensus 79 GNHD~~~~-----~~~~~~~~l--~~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (232)
T cd07393 79 GNHDYWWG-----SASKLRKAL--EES--RLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELE 149 (232)
T ss_pred CCccccCC-----CHHHHHHHH--Hhc--CeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHH
Confidence 99998321 111111111 100 0000012445678899998763211 0 01256899
Q ss_pred HHHHHhhccccCC-CCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCcc
Q 013955 266 WLKDDLSKVDRKK-TPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGA 344 (433)
Q Consensus 266 WL~~~L~~~~~~~-~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~ 344 (433)
||++.|+++.... ..++|+++|+|++.... ....+..++++++++++|+||+|..++..|+.. .-+|+
T Consensus 150 ~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~--------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~---~~~gi 218 (232)
T cd07393 150 RLELSLKAAKKREKEKIKIVMLHYPPANENG--------DDSPISKLIEEYGVDICVYGHLHGVGRDRAING---ERGGI 218 (232)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCcCCCC--------CHHHHHHHHHHcCCCEEEECCCCCCcccccccc---eECCE
Confidence 9999999865322 23689999999876532 124678889999999999999999988776531 13578
Q ss_pred EEEEECCC
Q 013955 345 VYITIGDG 352 (433)
Q Consensus 345 ~yi~~G~g 352 (433)
.|.++.++
T Consensus 219 ~~~~~~~~ 226 (232)
T cd07393 219 RYQLVSAD 226 (232)
T ss_pred EEEEEcch
Confidence 88877664
No 19
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.72 E-value=2.9e-16 Score=154.83 Aligned_cols=114 Identities=20% Similarity=0.299 Sum_probs=79.8
Q ss_pred CCceEEEE-eCeEEEEEEcccCCC-----CCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCC-----CCChh
Q 013955 235 SNLYYSFD-VAGAHLIMLGSYADY-----DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ-----GEGDG 303 (433)
Q Consensus 235 ~~~~ys~~-~g~v~fi~lds~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-----~~~~~ 303 (433)
+..||+|+ .++++||+|||.... ...++|++||+++|++. +.+++||++|||++....... +....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 46799999 899999999996431 23599999999999976 335699999999887543211 11112
Q ss_pred HHHHHHHHHHHc-CCcEEEecCcccceeeeecc-CCccCCCccEEEEECC
Q 013955 304 MMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVN-NGKPDPCGAVYITIGD 351 (433)
Q Consensus 304 ~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~-~~~~~~~g~~yi~~G~ 351 (433)
..++|.++|+++ +|.++|+||.|......-.. ++.....|...|.+++
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaS 416 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTAS 416 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccc
Confidence 357899999999 79999999999876443111 1111123666676653
No 20
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.72 E-value=1e-16 Score=145.28 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=100.0
Q ss_pred CCeEEEEEecCCCCCCh------------HHHHH-HhhcCCCceEEccccccccccchh-hHHHhhhhhhhhhh-CCCce
Q 013955 135 FPITFAVAGDLGQTGWT------------KSTLD-HIGQCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPLAS-ARPWM 199 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~~------------~~~l~-~i~~~~pd~vl~~GD~~~~~~~~~-~w~~~~~~~~~l~~-~iP~~ 199 (433)
+.+||++++|+|..... .+.++ .+...+||+||++||+++...... .+..+.+.++.+.. .+|++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 36899999999975432 12233 244779999999999998765432 34555556666544 59999
Q ss_pred eccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccc--cC
Q 013955 200 VTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVD--RK 277 (433)
Q Consensus 200 ~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~--~~ 277 (433)
+++||||.. ......|++||+++|++.. ..
T Consensus 81 ~~~GNHD~~------------------------------------------------g~l~~~ql~wL~~~l~~~~~~~~ 112 (199)
T cd07383 81 ATFGNHDGY------------------------------------------------DWIRPSQIEWFKETSAALKKKYG 112 (199)
T ss_pred EECccCCCC------------------------------------------------CCCCHHHHHHHHHHHHHHhhccC
Confidence 999999910 1124789999999999863 11
Q ss_pred CCCeEEEEecccccCCCCCCC---------CC---ChhHHHHH-HHHHHHcCCcEEEecCcccceeee
Q 013955 278 KTPWLLVLLHVPWYNSNEAHQ---------GE---GDGMMAIM-EPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~---------~~---~~~~~~~l-~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
...+.++++|+|+......+. .+ .......+ ..+.+..+|+++|+||+|.++...
T Consensus 113 ~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 113 KPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred CCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 234689999999865322111 01 00122334 444466789999999999987654
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.71 E-value=2.2e-16 Score=141.49 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=103.7
Q ss_pred EEEEecCCCCCChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccccccc
Q 013955 139 FAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQ 218 (433)
Q Consensus 139 f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~ 218 (433)
++++||+|........ ..+.+.++|+||++||+++.... .....+ +.+.. ..+|++.++||||.... ..
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~-~~~~~~-~~l~~--~~~p~~~v~GNHD~~~~------~~ 69 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK-EAAVEI-NLLLA--IGVPVLAVPGNCDTPEI------LG 69 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH-HHHHHH-HHHHh--cCCCEEEEcCCCCCHHH------HH
Confidence 5789999875322112 34567899999999999976543 122222 22322 24899999999997421 11
Q ss_pred ccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC------CCCChHHHHHHHHHhhccccCCCCeEEEEecccccC
Q 013955 219 SYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYN 292 (433)
Q Consensus 219 ~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~ 292 (433)
........ .....+.+++++|+++++... .....+|++|+ +.|+.. ..+.+|+++|+|++.
T Consensus 70 ~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~---~~~~~ilv~H~pp~~ 136 (188)
T cd07392 70 LLTSAGLN---------LHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNL---LAKNLILVTHAPPYG 136 (188)
T ss_pred hhhcCcEe---------cCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhcc---CCCCeEEEECCCCcC
Confidence 10000000 011245678899999987422 12346889998 445443 223589999999976
Q ss_pred C-CCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 293 S-NEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 293 ~-~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
. ............+.+.+++++++++++|+||.|...
T Consensus 137 ~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 137 TAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred CcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 3 211111111234788899999999999999999864
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.68 E-value=6.7e-16 Score=144.05 Aligned_cols=190 Identities=18% Similarity=0.125 Sum_probs=113.2
Q ss_pred EEEEEecCCCCCCh-------HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCC
Q 013955 138 TFAVAGDLGQTGWT-------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (433)
Q Consensus 138 ~f~~~gD~~~~~~~-------~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~ 210 (433)
||++++|+|..... +.+++.+.+.++|+||++||++.... ....+.+.+..+ ..+|++.++||||+...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~---~~~~~~~~l~~~-~~~pv~~v~GNHD~~~~ 76 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQ---RSLPFIEKLQEL-KGIKVTFNAGNHDMLKD 76 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchh---hHHHHHHHHHHh-cCCcEEEECCCCCCCCC
Confidence 58999999964211 23556666788999999999996421 122233333322 34899999999998521
Q ss_pred CcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCC--------------------------C-----C
Q 013955 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--------------------------D-----E 259 (433)
Q Consensus 211 ~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~--------------------------~-----~ 259 (433)
.. ...+...+. +. .....++.+..++++|++++...++ . .
T Consensus 77 ~~----~~~~~~~~~-~~----~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (239)
T TIGR03729 77 LT----YEEIESNDS-PL----YLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPER 147 (239)
T ss_pred CC----HHHHHhccc-hh----hhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHH
Confidence 11 111111110 00 0012233344467888888842211 0 1
Q ss_pred ChHHHHHHHHHhhccccCCCCeEEEEecccccCCCC----C--CCCC--ChhHHHHHHHHHHHcCCcEEEecCcccceee
Q 013955 260 YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE----A--HQGE--GDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (433)
Q Consensus 260 ~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~----~--~~~~--~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 331 (433)
..+|++||++.|++... +.+||++|+|+..... . .... .....+.|.+++++++|+++|+||+|.-...
T Consensus 148 ~~~~l~~l~~~l~~~~~---~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~ 224 (239)
T TIGR03729 148 TAIVLKQLKKQLNQLDN---KQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGP 224 (239)
T ss_pred HHHHHHHHHHHHHhcCC---CCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCC
Confidence 26789999999988743 2389999998754211 1 1110 0112478999999999999999999986432
Q ss_pred eeccCCccCCCccEEEEEC
Q 013955 332 IRVNNGKPDPCGAVYITIG 350 (433)
Q Consensus 332 ~~~~~~~~~~~g~~yi~~G 350 (433)
.. -+|+.|+.+.
T Consensus 225 ~~-------i~~~~~~~~~ 236 (239)
T TIGR03729 225 LT-------IGGTTYHNRP 236 (239)
T ss_pred EE-------ECCEEEEecC
Confidence 21 1467666543
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=144.67 Aligned_cols=179 Identities=23% Similarity=0.310 Sum_probs=118.7
Q ss_pred eEEEEEecCCCC--CC-h----HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCC
Q 013955 137 ITFAVAGDLGQT--GW-T----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 137 ~~f~~~gD~~~~--~~-~----~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
++|+.++|.|.. .. . .++++.++..+||++|++||+++.+ ....++...++++......|++++|||||...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~-~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG-EPEEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC-CHHHHHHHHHHHhhccCCCceEeeCCCCcCCc
Confidence 589999999987 22 1 3455677788999999999999874 33555666666664444588999999999864
Q ss_pred CCcccccccccccccccCCCCCCCCCCceEEEEe-CeEEEEEEcccCC----CCCChHHHHHHHHHhhccccCCCCeEEE
Q 013955 210 IPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYAD----YDEYSDQYRWLKDDLSKVDRKKTPWLLV 284 (433)
Q Consensus 210 ~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~-g~v~fi~lds~~~----~~~~~~Q~~WL~~~L~~~~~~~~~~~iv 284 (433)
.. ...+...+.... ..+-.... ++++++.+|+... ...+..|++||++.|++........+|+
T Consensus 80 ~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~ 147 (301)
T COG1409 80 VN-----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVV 147 (301)
T ss_pred hH-----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEE
Confidence 21 121222111110 01111112 6789999999653 2346999999999999876531124677
Q ss_pred EecccccCCCCCCCCCChhHHHHHHHHHHHcC--CcEEEecCcccc
Q 013955 285 LLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAY 328 (433)
Q Consensus 285 ~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y 328 (433)
++|||+.................+..++..++ |+++|+||.|..
T Consensus 148 ~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 148 LHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred ecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 77777665444322222234467778888888 999999999986
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.60 E-value=1.1e-14 Score=125.02 Aligned_cols=132 Identities=27% Similarity=0.298 Sum_probs=94.2
Q ss_pred EEEEecCCCCCChH-----------HHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhC-CCceeccCCCc
Q 013955 139 FAVAGDLGQTGWTK-----------STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA-RPWMVTQGNHE 206 (433)
Q Consensus 139 f~~~gD~~~~~~~~-----------~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~-iP~~~v~GNHD 206 (433)
|+.++|+|.+.... .+++.+.+.+||+|+++||+++.... .+|+.+.+.++.+... +|++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLP-EEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCH-HHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 57899998764321 13445567899999999999987653 5677777777777544 69999999999
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEe
Q 013955 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (433)
Q Consensus 207 ~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (433)
. |+++
T Consensus 80 ~---------------------------------------------------------------------------iv~~ 84 (144)
T cd07400 80 V---------------------------------------------------------------------------IVVL 84 (144)
T ss_pred E---------------------------------------------------------------------------EEEe
Confidence 6 8999
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECC
Q 013955 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (433)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~ 351 (433)
|+|++.......... ...+.+.+++++++++++|+||+|...... .. ...+++.++.+|+
T Consensus 85 Hhp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~-~~---~~~~~~~~~~aGs 144 (144)
T cd07400 85 HHPLVPPPGSGRERL-LDAGDALKLLAEAGVDLVLHGHKHVPYVGN-IS---NAGGGLVVIGAGT 144 (144)
T ss_pred cCCCCCCCccccccC-CCHHHHHHHHHHcCCCEEEECCCCCcCeee-cc---CCCCCEEEEecCC
Confidence 999877644221111 145789999999999999999999865433 11 1234666776664
No 25
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.60 E-value=9.6e-15 Score=134.77 Aligned_cols=168 Identities=21% Similarity=0.146 Sum_probs=102.5
Q ss_pred CeEEEEEecCCCCCC-----hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCC
Q 013955 136 PITFAVAGDLGQTGW-----TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (433)
Q Consensus 136 ~~~f~~~gD~~~~~~-----~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~ 210 (433)
++||++++|+|.... .+++++.+.+.+||+|+++||+++...... +.+.+.++.+....|++.++||||+...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEEECCCcccccC
Confidence 479999999997643 245666677889999999999998665422 3444555555556899999999999643
Q ss_pred CcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccc
Q 013955 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPW 290 (433)
Q Consensus 211 ~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~ 290 (433)
... ............. ..+....++.++..+..+.... .....+++.+.+++.+. .+++|++.|.|.
T Consensus 79 ~~~--~~~~~l~~~~v~~-----L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~~~--~~~~I~l~H~P~ 145 (223)
T cd07385 79 DEE--NWIEALESAGITV-----LRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGLDE--DDPNILLAHQPD 145 (223)
T ss_pred chH--HHHHHHHHcCCEE-----eecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCCCC--CCCEEEEecCCC
Confidence 221 0001111101110 1133445565654443332111 12223556666666433 346899999984
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeecc
Q 013955 291 YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVN 335 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~ 335 (433)
+.. . +.+.++|++++||+|..|...|..
T Consensus 146 ~~~-------------~----~~~~~~dl~l~GHtHggqi~~~~~ 173 (223)
T cd07385 146 TAE-------------E----AAAWGVDLQLSGHTHGGQIRLPGI 173 (223)
T ss_pred hhH-------------H----hcccCccEEEeccCCCCEEecccc
Confidence 321 1 256789999999999998766543
No 26
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.57 E-value=5.2e-14 Score=133.61 Aligned_cols=168 Identities=20% Similarity=0.177 Sum_probs=99.4
Q ss_pred CCCCeEEEEEecCCCCCC-----hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 133 AQFPITFAVAGDLGQTGW-----TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 133 ~~~~~~f~~~gD~~~~~~-----~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
...++|+++++|+|.+.. .+++++.+++.+||+|+++||+++.+.. ..++.+.+.++.+....|+++|+||||+
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~-~~~~~~~~~L~~L~~~~pv~~V~GNHD~ 124 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMP-LNFSAFSDVLSPLAECAPTFACFGNHDR 124 (271)
T ss_pred CCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCcc-ccHHHHHHHHHHHhhcCCEEEecCCCCc
Confidence 356799999999997632 2345566678899999999999873322 2345566667777666899999999998
Q ss_pred CCCCcccccccccccccccCCCCCCCCCCceEEEEeCe--EEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEE
Q 013955 208 ESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAG--AHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (433)
Q Consensus 208 ~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~--v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (433)
..... ....+.+.+. ..+-.-..+....+..++ +.++++|.... +... ..+.+++ + ..+|++
T Consensus 125 ~~~~~---~~~~~~~~l~--~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~---~~~~~~~----~-~~~IlL 188 (271)
T PRK11340 125 PVGTE---KNHLIGETLK--SAGITVLFNQATVIATPNRQFELVGTGDLWA---GQCK---PPPASEA----N-LPRLVL 188 (271)
T ss_pred ccCcc---chHHHHHHHH--hcCcEEeeCCeEEEeeCCcEEEEEEecchhc---cCCC---hhHhcCC----C-CCeEEE
Confidence 53211 0011111110 000000113444455443 66777764211 1111 1112221 2 248999
Q ss_pred ecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeec
Q 013955 286 LHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRV 334 (433)
Q Consensus 286 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~ 334 (433)
.|.|-.- +.+.+.++|++||||+|.-|-..|.
T Consensus 189 ~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 189 AHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred EcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 9999431 1135578999999999998876553
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.57 E-value=7.3e-14 Score=127.56 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=104.7
Q ss_pred CCeEEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcc
Q 013955 135 FPITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI 213 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~ 213 (433)
...|+++++|+|.+.. .+++++.+++.++|+||++||+++.+........+.+.+..+ ..|+++++||||.. ..
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~~V~GNhD~~-v~-- 77 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA--HLPTFYVPGPQDAP-LW-- 77 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCceEEEcCCCChH-HH--
Confidence 4578999999986432 234455555679999999999998653222333333333322 38999999999973 10
Q ss_pred ccccc-ccccccccCCCCCCCCCCceEEEEe-CeEEEEEEcccCCC--CCChHHH----HHHHH----HhhccccCCCCe
Q 013955 214 MDAFQ-SYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYADY--DEYSDQY----RWLKD----DLSKVDRKKTPW 281 (433)
Q Consensus 214 ~~~~~-~y~~~~~~p~~~~~~~~~~~ys~~~-g~v~fi~lds~~~~--~~~~~Q~----~WL~~----~L~~~~~~~~~~ 281 (433)
.... .+.+....|.. .. ..+. ...+ |+++|+.++....+ ...++|. .||.+ .+.+. ..+.
T Consensus 78 -~~l~~~~~~~~~~p~~-~~-lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~---~~~~ 149 (224)
T cd07388 78 -EYLREAYNAELVHPEI-RN-VHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL---KDYR 149 (224)
T ss_pred -HHHHHHhcccccCccc-ee-cCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC---CCCC
Confidence 0011 11100011210 00 0112 2344 55999999865433 2234542 56433 34333 2235
Q ss_pred EEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcc
Q 013955 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326 (433)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H 326 (433)
.|+++|+||+..+..+ ...+.+..+++++++.+++|||.|
T Consensus 150 ~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 150 KVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred eEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 8999999999874322 345788999999999999999999
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.56 E-value=2.1e-14 Score=126.31 Aligned_cols=145 Identities=21% Similarity=0.200 Sum_probs=88.8
Q ss_pred EEEEecCCCCCChHH-HH-HHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccccc
Q 013955 139 FAVAGDLGQTGWTKS-TL-DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (433)
Q Consensus 139 f~~~gD~~~~~~~~~-~l-~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~ 216 (433)
|+++||+|.+..... .+ +.+...++|+++++||+++.... ..+.. .........|++.++||||+.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~-~~~~~---~~~~~~~~~~v~~v~GNHD~~-------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDA-PRFAP---LLLALKGFEPVIYVPGNHEFY-------- 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcch-HHHHH---HHHhhcCCccEEEeCCCcceE--------
Confidence 578999997643322 22 33457799999999999975443 22221 222233458999999999983
Q ss_pred ccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCC-ChHHHHHHHHHhhccccCCCCeEEEEecccccCCCC
Q 013955 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDE-YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (433)
Q Consensus 217 ~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~-~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (433)
++|+...-..++.. ..++.+|+.++++ +.+||++|||+.....
T Consensus 69 -----------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~-------~~~vv~~HhpP~~~~~ 112 (166)
T cd07404 69 -----------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR-------GKTVVVTHHAPSPLSL 112 (166)
T ss_pred -----------------------------EEEEeeecccccCccchHHHHhCCCCCC-------CCEEEEeCCCCCcccc
Confidence 11111111111111 1344555555444 2389999999987643
Q ss_pred CCC---C-CChhHHHHHHHHHHHcCCcEEEecCcccceee
Q 013955 296 AHQ---G-EGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (433)
Q Consensus 296 ~~~---~-~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 331 (433)
... . .....++.+..++++.+|+++++||+|.....
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 113 APQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 221 1 11134566888888999999999999987433
No 29
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.55 E-value=6.4e-14 Score=136.88 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=65.6
Q ss_pred CceEEEE-eCeE--EEEEEcccCC-----------CCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCC-CCC
Q 013955 236 NLYYSFD-VAGA--HLIMLGSYAD-----------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH-QGE 300 (433)
Q Consensus 236 ~~~ys~~-~g~v--~fi~lds~~~-----------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-~~~ 300 (433)
..||+|+ .|++ ++|+||+... .....+|++||+++|+++.. +.+++|+++|+|+....... ...
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5855 9999998641 11358999999999998864 44678888888876522211 000
Q ss_pred ------------ChhHHHHHHHHHHHc-CCcEEEecCcccc
Q 013955 301 ------------GDGMMAIMEPLLYAA-SVDLVLAGHVHAY 328 (433)
Q Consensus 301 ------------~~~~~~~l~~l~~~~-~VdlvlsGH~H~y 328 (433)
+.....+|..+|++| +|.++||||.|..
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 011124899999999 6889999999964
No 30
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=120.71 Aligned_cols=254 Identities=21% Similarity=0.273 Sum_probs=136.1
Q ss_pred CCCeEEEEEecCCCCCC--------------------hHHHHHH-hhcCCCceEEccccccccccchhhHHHhhhhhhhh
Q 013955 134 QFPITFAVAGDLGQTGW--------------------TKSTLDH-IGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPL 192 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~--------------------~~~~l~~-i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l 192 (433)
.++||++.++|+|.+.. ....+++ ++.++||||+++||+++.......-..+.+.++|.
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~ 130 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPA 130 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhH
Confidence 67899999999986532 0123444 35899999999999999855433334455666665
Q ss_pred -hhCCCceeccCCCcCCCCCcccccccccccccccCCC--CCCCCCCceE-EEEeCe------------------EEEEE
Q 013955 193 -ASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE--ESGSNSNLYY-SFDVAG------------------AHLIM 250 (433)
Q Consensus 193 -~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~--~~~~~~~~~y-s~~~g~------------------v~fi~ 250 (433)
...|||.+++||||-.+.-.. .....+.. .+|.. ...+.++.-| -..+|+ ..+++
T Consensus 131 I~~~IPwA~~lGNHDdes~ltr-~ql~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyf 207 (379)
T KOG1432|consen 131 IDRKIPWAAVLGNHDDESDLTR-LQLMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYF 207 (379)
T ss_pred hhcCCCeEEEecccccccccCH-HHHHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEE
Confidence 446999999999998643210 01111111 12211 0001111111 111111 23456
Q ss_pred EcccCC---------C-CCChHHHHHHHHHhhcc---ccCCCC-eEEEEeccccc--CCCCC---CCC---C---ChhHH
Q 013955 251 LGSYAD---------Y-DEYSDQYRWLKDDLSKV---DRKKTP-WLLVLLHVPWY--NSNEA---HQG---E---GDGMM 305 (433)
Q Consensus 251 lds~~~---------~-~~~~~Q~~WL~~~L~~~---~~~~~~-~~iv~~H~P~~--~~~~~---~~~---~---~~~~~ 305 (433)
||+..+ | .....|..||+..-.+- ..+-.| --+++.|.|+- ..-.. ..+ + .....
T Consensus 208 ld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~ 287 (379)
T KOG1432|consen 208 LDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHN 287 (379)
T ss_pred EecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccc
Confidence 665322 1 12478999999887331 111112 35889999972 11111 000 0 00122
Q ss_pred HHHHHHHH-HcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEE
Q 013955 306 AIMEPLLY-AASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKI 384 (433)
Q Consensus 306 ~~l~~l~~-~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v 384 (433)
..+...|. ..+|++|++||+|...-..+.. +.+++.=|+|+...+ +. .+.|. -+-.++++
T Consensus 288 sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k-------~~~wlCygGgaGygg----Yg--~~gw~------Rr~Rv~e~ 348 (379)
T KOG1432|consen 288 SGFLTTLVNRGNVKGVFCGHDHVNDFCGELK-------GELWLCYGGGAGYGG----YG--IGGWE------RRARVFEL 348 (379)
T ss_pred cHHHHHHHhccCcceEEeccccccceecccC-------CeEEEEecCCCccCC----cC--cCCcc------cceEEEEc
Confidence 45555555 7899999999999988776543 556776555433322 11 22331 12233444
Q ss_pred EcCceEEEEEEEeCCCCCeeeeEEE
Q 013955 385 VNSTHAFWSWHRNDDDEPVRSDQLW 409 (433)
Q Consensus 385 ~~~~~l~~~~~~~~~g~~~v~d~f~ 409 (433)
.....---.|++.+|+.-.++|.=-
T Consensus 349 d~~~~~IkTWKRl~d~~~~~~D~q~ 373 (379)
T KOG1432|consen 349 DLNKDRIKTWKRLDDKPLSVIDYQL 373 (379)
T ss_pred cccccccceeeecCCCCcceeeeEE
Confidence 3221122357888777655667633
No 31
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.52 E-value=9.4e-14 Score=127.98 Aligned_cols=186 Identities=17% Similarity=0.141 Sum_probs=105.4
Q ss_pred EEEEEecCCCCCCh----------------HHHHHHhhcCCCceEEccccccccccc-hhhHHHhhhhhhhhh-hCCCce
Q 013955 138 TFAVAGDLGQTGWT----------------KSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQPLA-SARPWM 199 (433)
Q Consensus 138 ~f~~~gD~~~~~~~----------------~~~l~~i~~~~pd~vl~~GD~~~~~~~-~~~w~~~~~~~~~l~-~~iP~~ 199 (433)
||++++|+|.+... +++++.+.+.+||+||++||+++.... ...+..+.+.++.+. ..+|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 68999999876431 234445557899999999999986542 234555666666664 369999
Q ss_pred eccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCC
Q 013955 200 VTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKT 279 (433)
Q Consensus 200 ~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~ 279 (433)
+++||||.............+.. +................+...++.|++++..... ....+.++++..+..... .
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~--~ 156 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSG-LHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPLDP--D 156 (223)
T ss_pred EecCCCCCccccccccchHhhCc-EEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhccCC--C
Confidence 99999999643211000000000 0000000000011222334556888888754221 113344444555544432 3
Q ss_pred CeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceee
Q 013955 280 PWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (433)
Q Consensus 280 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 331 (433)
...|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 157 ~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 157 DFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred CcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 468999999976544321110 123344466778999999999987543
No 32
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.45 E-value=1.9e-13 Score=98.80 Aligned_cols=62 Identities=37% Similarity=0.805 Sum_probs=41.0
Q ss_pred CccEEEEECCCCCCCcccccCCCCCCCcceeEeccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEE
Q 013955 342 CGAVYITIGDGGNKEGLARKYKNPQPDWSVFREASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQL 408 (433)
Q Consensus 342 ~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f 408 (433)
++|+||++|+||+. + ..+..++|+|++++..+|||++|++.|+|+|.|||++++||+ |+|+|
T Consensus 1 kapVhiv~G~aG~~--l-~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~--v~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNG--L-DPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGS--VLDEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T---CEE-
T ss_pred CCCEEEEECcCCCC--c-ccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCc--EecCC
Confidence 37999999999994 3 357778899999999999999999999999999999988776 99998
No 33
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.36 E-value=6.2e-12 Score=104.77 Aligned_cols=116 Identities=29% Similarity=0.283 Sum_probs=83.5
Q ss_pred EEEecCCCCCChHHHH---HHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccccc
Q 013955 140 AVAGDLGQTGWTKSTL---DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (433)
Q Consensus 140 ~~~gD~~~~~~~~~~l---~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~ 216 (433)
+++||+|......... ....+.++|++|++||+++...... +..+...........|++.++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPE-EVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCch-HHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 4789998775543332 3556889999999999998766532 2222222223334599999999999
Q ss_pred ccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCC
Q 013955 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA 296 (433)
Q Consensus 217 ~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 296 (433)
|+++|.|++.....
T Consensus 70 ------------------------------------------------------------------i~~~H~~~~~~~~~ 83 (131)
T cd00838 70 ------------------------------------------------------------------ILLTHGPPYDPLDE 83 (131)
T ss_pred ------------------------------------------------------------------EEEeccCCCCCchh
Confidence 89999998776543
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 297 HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 297 ~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
........+..+..++.+.+++++|+||.|.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 84 LSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred hcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 221111246888999999999999999999998775
No 34
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.35 E-value=8.6e-12 Score=105.75 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=84.0
Q ss_pred EEEEEecCCCCCChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccc
Q 013955 138 TFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (433)
Q Consensus 138 ~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~ 217 (433)
||+++||+|.... .+...++|+++++||+++.... ..++.+.+.++.+. ..+++.++||||... .
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~~-~~~~~~~~~l~~~~-~~~~~~v~GNHD~~~------~- 65 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGTL-EELQKFLDWLKSLP-HPHKIVIAGNHDLTL------D- 65 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHhCC-CCeEEEEECCCCCcC------C-
Confidence 5899999986543 3345789999999999875443 33444444444432 123578999999721 0
Q ss_pred cccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCC
Q 013955 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (433)
Q Consensus 218 ~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (433)
. . ...|++.|.|++......
T Consensus 66 --------------------------------------------------------~---~-~~~ilv~H~~p~~~~~~~ 85 (135)
T cd07379 66 --------------------------------------------------------P---E-DTDILVTHGPPYGHLDLV 85 (135)
T ss_pred --------------------------------------------------------C---C-CCEEEEECCCCCcCcccc
Confidence 1 1 137889999987754322
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEE
Q 013955 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITI 349 (433)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~ 349 (433)
........+.+.+++++.+++++|+||+|........- ...+++.+|.+
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~---~~~~~t~~in~ 134 (135)
T cd07379 86 SSGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVL---DTDGETLFVNA 134 (135)
T ss_pred ccCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEec---ccCCCEEEEeC
Confidence 11111233677788899999999999999864221000 01357777754
No 35
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=114.00 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=59.7
Q ss_pred CCCeEEEEEecCCCCCCh---HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCC
Q 013955 134 QFPITFAVAGDLGQTGWT---KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~---~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
..+++++.++|.|..... .+.+..+.+..||+|+++||+++... ...+..+.+.++++.+..+++++.||||+..
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~-~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR-PPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC-CCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 578999999999987655 34555666888899999999998522 2355666778888888899999999999964
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.25 E-value=1.6e-10 Score=105.99 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=44.6
Q ss_pred eEEEEEecCCCCCChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCC
Q 013955 137 ITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
+|++++||+|... .....+.+...+||+||++||+++.. ..+.+.+..+ ..|++.++||||...
T Consensus 1 ~rIa~isDiHg~~-~~~~~~~l~~~~pD~Vl~~GDi~~~~------~~~~~~l~~l--~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQW-DLEDIKALHLLQPDLVLFVGDFGNES------VQLVRAISSL--PLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCc-hHHHHHHHhccCCCEEEECCCCCcCh------HHHHHHHHhC--CCCeEEEcCCCcccc
Confidence 5899999999653 33334566778999999999998532 1122222222 379999999999854
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.24 E-value=2.7e-11 Score=105.00 Aligned_cols=138 Identities=25% Similarity=0.284 Sum_probs=81.9
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccc
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMD 215 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~ 215 (433)
+||+++||+|.+.. ..++++.+ .+||+|+++||+++. ..+.+.++.+ |++.+.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-------~~~~~~~~~~----~~~~v~GNHD~~~------ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-------EEVLELLRDI----PVYVVRGNHDNWA------ 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-------HHHHHHHHHH----EEEEE--CCHSTH------
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-------HHHHHHHhcC----CEEEEeCCccccc------
Confidence 68999999997633 23556666 479999999999862 2233333332 9999999999631
Q ss_pred cccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCC
Q 013955 216 AFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (433)
Q Consensus 216 ~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (433)
+...... .. +. ......-....|++.|.+.+....
T Consensus 62 ----~~~~~~~----------~~----------------------------~~---~~~~~~~~~~~i~~~H~~~~~~~~ 96 (156)
T PF12850_consen 62 ----FPNENDE----------EY----------------------------LL---DALRLTIDGFKILLSHGHPYDVQW 96 (156)
T ss_dssp ----HHSEECT----------CS----------------------------SH---SEEEEEETTEEEEEESSTSSSSTT
T ss_pred ----chhhhhc----------cc----------------------------cc---cceeeeecCCeEEEECCCCccccc
Confidence 1110000 00 00 010000113578888887665321
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCC
Q 013955 296 AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGN 354 (433)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~ 354 (433)
..+.+..++...+++++++||.|..+... .+++.++..|+-+.
T Consensus 97 --------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 97 --------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIGG 139 (156)
T ss_dssp --------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSSS
T ss_pred --------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCCC
Confidence 22456678889999999999999977655 24788888887654
No 38
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.16 E-value=4.5e-09 Score=93.25 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=97.4
Q ss_pred EEEEEecCCCCCCh---H-HHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcc
Q 013955 138 TFAVAGDLGQTGWT---K-STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI 213 (433)
Q Consensus 138 ~f~~~gD~~~~~~~---~-~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~ 213 (433)
+++++||+|.+... . .+++.++..++|.|+++||++.. ..++ .++.+ ..|++.|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~----~~~~----~l~~~--~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSK----ETYD----YLKTI--APDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCH----HHHH----HHHhh--CCceEEEECCCCccc----
Confidence 47899999954332 2 33444445789999999999751 2222 22222 247899999999731
Q ss_pred cccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCC
Q 013955 214 MDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNS 293 (433)
Q Consensus 214 ~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~ 293 (433)
.+|. ...+++++ ++|.+.|--.+..
T Consensus 67 -----------~lp~---------~~~~~~~g-----------------------------------~~i~l~HG~~~~~ 91 (178)
T cd07394 67 -----------NYPE---------TKVITVGQ-----------------------------------FKIGLIHGHQVVP 91 (178)
T ss_pred -----------cCCC---------cEEEEECC-----------------------------------EEEEEEECCcCCC
Confidence 2232 11233333 2455555322211
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCCCcccccCCCCCCCcceeE
Q 013955 294 NEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFR 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~ 373 (433)
.. ..+.+..++++.++|++++||+|...... .+|+.+++.|+.|.+.+- .+.
T Consensus 92 ~~--------~~~~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~~~~~----~~~-------- 143 (178)
T cd07394 92 WG--------DPDSLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATGAFSP----LDP-------- 143 (178)
T ss_pred CC--------CHHHHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCCCCCC----CCC--------
Confidence 10 11345556677889999999999765433 247888989987643210 001
Q ss_pred eccccEEEEEEEcCceEEEEEEEeCCCC
Q 013955 374 EASFGHGELKIVNSTHAFWSWHRNDDDE 401 (433)
Q Consensus 374 ~~~~G~~~l~v~~~~~l~~~~~~~~~g~ 401 (433)
.....|+++++.+ ..+.+++++..+++
T Consensus 144 ~~~~syail~~~~-~~~~~~~~~l~~~~ 170 (178)
T cd07394 144 NVIPSFVLMDIQG-SKVVTYVYQLIDGE 170 (178)
T ss_pred CCCCeEEEEEecC-CeEEEEEEEEECCc
Confidence 0123678888744 45788888875554
No 39
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.16 E-value=1.3e-10 Score=103.16 Aligned_cols=109 Identities=15% Similarity=0.267 Sum_probs=70.4
Q ss_pred hhcCCCceEEccccccccccch--hhHHHhhhhhhhh---hhCCCceeccCCCcCCCCCcccccccccccccccCCCCCC
Q 013955 158 IGQCKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPL---ASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESG 232 (433)
Q Consensus 158 i~~~~pd~vl~~GD~~~~~~~~--~~w~~~~~~~~~l---~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~ 232 (433)
+...+||+|+++||+++.+... .+|....+-+.++ ...+|++.++||||.++.... ....-.++|.
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~--~~~~~v~RF~------- 108 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED--PIESKIRRFE------- 108 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCC--cCHHHHHHHH-------
Confidence 3467999999999999987642 2343322222222 234899999999999642110 0011112221
Q ss_pred CCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHH
Q 013955 233 SNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLL 312 (433)
Q Consensus 233 ~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~ 312 (433)
.+| |+++|.|+..... ..+..++
T Consensus 109 ----~~F-------------------------------------------i~lsH~P~~~~~~----------~~~~~~~ 131 (195)
T cd08166 109 ----KYF-------------------------------------------IMLSHVPLLAEGG----------QALKHVV 131 (195)
T ss_pred ----Hhh-------------------------------------------eeeeccccccccc----------HHHHHHH
Confidence 111 8999999865432 2667888
Q ss_pred HHcCCcEEEecCcccceeee
Q 013955 313 YAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 313 ~~~~VdlvlsGH~H~y~r~~ 332 (433)
.++.++++|+||.|.+....
T Consensus 132 ~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 132 TDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HhcCceEEEEcCccceeeEE
Confidence 99999999999999976543
No 40
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.14 E-value=3.3e-10 Score=98.33 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=80.9
Q ss_pred EEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccccc
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~ 216 (433)
|++++||+|.... .+++++.+.+ +|.|+++||+++...... +....|++.|+||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~-----------~~~~~~~~~V~GNhD~~~~------ 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE-----------LELKAPVIAVRGNCDGEVD------ 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch-----------hhcCCcEEEEeCCCCCcCC------
Confidence 5899999996531 2233444333 999999999987543211 2334789999999998421
Q ss_pred ccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCC
Q 013955 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA 296 (433)
Q Consensus 217 ~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 296 (433)
. ..+|. ...++++ ..+|++.|.+.......
T Consensus 62 ----~--~~~p~---------~~~~~~~-----------------------------------g~~i~v~Hg~~~~~~~~ 91 (155)
T cd00841 62 ----F--PILPE---------EAVLEIG-----------------------------------GKRIFLTHGHLYGVKNG 91 (155)
T ss_pred ----c--ccCCc---------eEEEEEC-----------------------------------CEEEEEECCcccccccc
Confidence 0 01121 1111111 13678888776543211
Q ss_pred CCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCC
Q 013955 297 HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNK 355 (433)
Q Consensus 297 ~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~ 355 (433)
. .. ..++.+.++|++++||+|...... .+++.++..|+.|.+
T Consensus 92 -------~-~~-~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~~ 133 (155)
T cd00841 92 -------L-DR-LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSLP 133 (155)
T ss_pred -------h-hh-hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccCc
Confidence 0 11 455677889999999999865432 247888888887653
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.13 E-value=4e-10 Score=105.27 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=91.9
Q ss_pred eEEEEEecCCCCCChH----HHHHHhh--cCCCceEEccccccccc---c-chhhHHHhhhhhhhhhhC-CCceeccCCC
Q 013955 137 ITFAVAGDLGQTGWTK----STLDHIG--QCKYDVHLLPGDLSYAD---Y-MQHRWDTFGELVQPLASA-RPWMVTQGNH 205 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~l~~i~--~~~pd~vl~~GD~~~~~---~-~~~~w~~~~~~~~~l~~~-iP~~~v~GNH 205 (433)
+++++++|+|.+.... ..++.+. ..+||+|+++||+++.- . .........+.++.+... +|++.++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4789999999765432 2344442 46899999999999631 1 112223445556666554 8999999999
Q ss_pred cCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEE
Q 013955 206 EKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (433)
Q Consensus 206 D~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (433)
|..... .+.+...... -+....+++++.++++.-.... ......++++.+.+... |...+
T Consensus 81 D~~~~~-------~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~r~~~r~~------~~~~~ 140 (241)
T PRK05340 81 DFLLGK-------RFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRFRRKVRNP------WLQWL 140 (241)
T ss_pred chhhhH-------HHHHhCCCEE------eCCcEEEEECCEEEEEECCccc-ccCCHHHHHHHHHHhCH------HHHHH
Confidence 974211 1111111000 0123346677777776643221 11223334443333321 11111
Q ss_pred ecccccCCC---------------C-CCCCCChhHHHHHHHHHHHcCCcEEEecCccccee
Q 013955 286 LHVPWYNSN---------------E-AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (433)
Q Consensus 286 ~H~P~~~~~---------------~-~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 330 (433)
.|.+++... . ..........+.+.+++++++++++++||+|....
T Consensus 141 ~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 141 FLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce
Confidence 122211000 0 00000011235678889999999999999998654
No 42
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.12 E-value=9.8e-10 Score=97.88 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=106.8
Q ss_pred CCeEEEEEecCCCCCC-hHHHHHHhhcCCCceEEcccccc--ccccchhhHHHhhhhhhhhh-hCCCceeccCCCcCCCC
Q 013955 135 FPITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLS--YADYMQHRWDTFGELVQPLA-SARPWMVTQGNHEKESI 210 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~--~~~~~~~~w~~~~~~~~~l~-~~iP~~~v~GNHD~~~~ 210 (433)
..+|+++++|.|.... .++.+..++..++|+++++||++ +-+.....-... .++.+. ..+|+++++||-|-...
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~--~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELN--KLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhh--HHHHHHhcCCeEEEEcCCCChHHH
Confidence 4689999999987654 35566666678999999999999 433321111110 034444 35999999999886321
Q ss_pred CcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEccc--CCC----CCC-hHHHHHHHHHhhccccCCCCeEE
Q 013955 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSY--ADY----DEY-SDQYRWLKDDLSKVDRKKTPWLL 283 (433)
Q Consensus 211 ~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~--~~~----~~~-~~Q~~WL~~~L~~~~~~~~~~~i 283 (433)
.. -... ....- . + -..+++++.|+.+--. ..+ ... .+-+.-|++-++.... +-.|
T Consensus 80 ~~---~l~~----~~~~v-----~-~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~---~~~I 141 (226)
T COG2129 80 ID---VLKN----AGVNV-----H-G--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN---PVNI 141 (226)
T ss_pred HH---HHHh----ccccc-----c-c--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC---cceE
Confidence 11 0000 10000 0 1 3466777777774321 111 112 2333445555555432 1139
Q ss_pred EEecccccCCCCCCCCC-ChhHHHHHHHHHHHcCCcEEEecCccccee
Q 013955 284 VLLHVPWYNSNEAHQGE-GDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (433)
Q Consensus 284 v~~H~P~~~~~~~~~~~-~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 330 (433)
++.|.||+......... .....+.+.+++++.++.+.+|||.|.+.-
T Consensus 142 l~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G 189 (226)
T COG2129 142 LLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRG 189 (226)
T ss_pred EEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeeccccc
Confidence 99999999876652111 234668999999999999999999998543
No 43
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.12 E-value=2.1e-10 Score=101.78 Aligned_cols=178 Identities=18% Similarity=0.189 Sum_probs=91.7
Q ss_pred CeEEEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHH--------------------------Hhhhh
Q 013955 136 PITFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWD--------------------------TFGEL 188 (433)
Q Consensus 136 ~~~f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~--------------------------~~~~~ 188 (433)
+-++++++|.+... ...++++.+...+||+++++||+.-......+|. .|++.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~ 84 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRI 84 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHH
Confidence 35789999985432 2345666677889999999999987666556666 45555
Q ss_pred hhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC-CC------C--
Q 013955 189 VQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD-YD------E-- 259 (433)
Q Consensus 189 ~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~-~~------~-- 259 (433)
+..+ .+|++++|||||........+ +|....-.|.- ..-...+.+--|.+.|+.+..... .. .
T Consensus 85 L~~~--~~p~~~vPG~~Dap~~~~lr~---a~~~e~v~p~~---~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrY 156 (255)
T PF14582_consen 85 LGEL--GVPVFVVPGNMDAPERFFLRE---AYNAEIVTPHI---HNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRY 156 (255)
T ss_dssp HHCC---SEEEEE--TTS-SHHHHHHH---HHHCCCC-TTE---EE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EE
T ss_pred HHhc--CCcEEEecCCCCchHHHHHHH---Hhccceeccce---eeeeeeecccCCcEEEEecCccccCCCccccccccc
Confidence 5444 399999999999842111000 11111111110 000112223334467776654311 00 0
Q ss_pred ChHHHHHHHHHhhccccCCCCeEEEEecccc-cCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 260 YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 260 ~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
.....+|..+.|.+.+. .-+|++.|.|+ +..+..+ ...+.+.+++++++++++||||.|.-.
T Consensus 157 P~weaey~lk~l~elk~---~r~IlLfhtpPd~~kg~~h-----~GS~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 157 PAWEAEYSLKFLRELKD---YRKILLFHTPPDLHKGLIH-----VGSAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp EHHHHHHHHGGGGGCTS---SEEEEEESS-BTBCTCTBT-----TSBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred hHHHHHHHHHHHHhccc---ccEEEEEecCCccCCCccc-----ccHHHHHHHHHhcCCcEEEecccccch
Confidence 12345666677777632 23788899998 3322222 234789999999999999999999754
No 44
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.06 E-value=2.1e-09 Score=107.98 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=103.5
Q ss_pred HHHHHHhh--cCCCceEEccccccccccc----hhhH---HHhhhhhhhhhhCCCceeccCCCcCCCCCcc-----ccc-
Q 013955 152 KSTLDHIG--QCKYDVHLLPGDLSYADYM----QHRW---DTFGELVQPLASARPWMVTQGNHEKESIPLI-----MDA- 216 (433)
Q Consensus 152 ~~~l~~i~--~~~pd~vl~~GD~~~~~~~----~~~w---~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~-----~~~- 216 (433)
..++++|+ ..++|+|+++||++-.... +... ....+.+.+....+|+++++||||....... ...
T Consensus 198 es~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 198 ESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 45677776 3349999999999865522 1111 1233445555668999999999998532110 000
Q ss_pred -----cccccccc--ccCCCC-CCCCCCceEEE-EeCeEEEEEEcccCCC----------CCChHHHHHHHHHhhccccC
Q 013955 217 -----FQSYNARW--KMPFEE-SGSNSNLYYSF-DVAGAHLIMLGSYADY----------DEYSDQYRWLKDDLSKVDRK 277 (433)
Q Consensus 217 -----~~~y~~~~--~~p~~~-~~~~~~~~ys~-~~g~v~fi~lds~~~~----------~~~~~Q~~WL~~~L~~~~~~ 277 (433)
+..+...| -+|.+. .....+.+|.. ..+|.++|+||+..-+ .....|++|+..+|.+++.+
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~ 357 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESA 357 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhc
Confidence 01111112 134321 11223556654 4689999999995321 12478899999999998765
Q ss_pred CCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcC--CcEEEecCcccce
Q 013955 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAYE 329 (433)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y~ 329 (433)
+. -|=+++|.|+-.. ....+ ....+-.++.++. +...|.||.|.-+
T Consensus 358 Ge-kVhil~HIPpG~~-~c~~~----ws~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 358 GE-KVHILGHIPPGDG-VCLEG----WSINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred CC-EEEEEEeeCCCCc-chhhh----hhHHHHHHHHHHHHhhhhhccccCccee
Confidence 44 3889999997431 11111 2244555566653 5578999999865
No 45
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.03 E-value=2e-09 Score=93.38 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=35.0
Q ss_pred hhcCCCceEEccccccccccc--hhhHHHhhhhhhhhh---hCCCceeccCCCcCC
Q 013955 158 IGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLA---SARPWMVTQGNHEKE 208 (433)
Q Consensus 158 i~~~~pd~vl~~GD~~~~~~~--~~~w~~~~~~~~~l~---~~iP~~~v~GNHD~~ 208 (433)
+...+||+|+++||+++.... ...|..+...+..+. ..+|++.++||||..
T Consensus 34 i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 347899999999999976432 234544333333332 248999999999984
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.01 E-value=5.9e-09 Score=96.70 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=46.5
Q ss_pred EEEecCCCCCCh----HHHHHHhhc--CCCceEEccccccccc----cchhhHHHhhhhhhhhhh-CCCceeccCCCcCC
Q 013955 140 AVAGDLGQTGWT----KSTLDHIGQ--CKYDVHLLPGDLSYAD----YMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (433)
Q Consensus 140 ~~~gD~~~~~~~----~~~l~~i~~--~~pd~vl~~GD~~~~~----~~~~~w~~~~~~~~~l~~-~iP~~~v~GNHD~~ 208 (433)
++++|+|.+... +..++.+.+ .+||+|+++||+++.. ......+.+.+.++.+.. .+|++.++||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 689999976532 344555543 3899999999999731 111222344455666654 48999999999984
No 47
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.99 E-value=4.6e-09 Score=91.50 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred eEEEEEecCCCCCCh-HHHHHHhhcC-CCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 137 ITFAVAGDLGQTGWT-KSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~l~~i~~~-~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
+|++++||+|..... +..++.+... ++|.|+++||++.. .. .+.++.+ ..|++.|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~----~~----~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTSP----FV----LKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCCH----HH----HHHHHHh--CCceEEEccCCCc
Confidence 589999999965432 3344555555 89999999999721 11 1222222 3589999999997
No 48
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.98 E-value=7.7e-09 Score=95.73 Aligned_cols=156 Identities=20% Similarity=0.153 Sum_probs=96.3
Q ss_pred EEEEEecCCCCCChHHHHHHhh----cCCCceEEccccccccccch---------------------h----hHHHhh--
Q 013955 138 TFAVAGDLGQTGWTKSTLDHIG----QCKYDVHLLPGDLSYADYMQ---------------------H----RWDTFG-- 186 (433)
Q Consensus 138 ~f~~~gD~~~~~~~~~~l~~i~----~~~pd~vl~~GD~~~~~~~~---------------------~----~w~~~~-- 186 (433)
||++.++.+...........+. +.+||++|++||.+|.+... . .+..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5777888765544444555554 88999999999999987520 1 111111
Q ss_pred hhhhhhhhCCCceeccCCCcCCCCCccc---------------ccccccccccccCCCCCC--CCCCceEEEEeCeE-EE
Q 013955 187 ELVQPLASARPWMVTQGNHEKESIPLIM---------------DAFQSYNARWKMPFEESG--SNSNLYYSFDVAGA-HL 248 (433)
Q Consensus 187 ~~~~~l~~~iP~~~v~GNHD~~~~~~~~---------------~~~~~y~~~~~~p~~~~~--~~~~~~ys~~~g~v-~f 248 (433)
..++.+.+.+|++.++.+||+..+.... .....|...+..+..... .....|+++.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 2345566779999999999996432210 111233333322221111 23578999999996 99
Q ss_pred EEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCC--cEEEecCcc
Q 013955 249 IMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASV--DLVLAGHVH 326 (433)
Q Consensus 249 i~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~V--dlvlsGH~H 326 (433)
++||+.... +.+ ..-...++.+..++.+.++ -++|||+.|
T Consensus 161 ~~lD~R~~R-------------------------------------d~W-~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR-------------------------------------DSW-DGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc-------------------------------------ccc-cccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999997653 111 1123467777777655532 289999999
Q ss_pred cceee
Q 013955 327 AYERS 331 (433)
Q Consensus 327 ~y~r~ 331 (433)
.....
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 76544
No 49
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.98 E-value=2.6e-09 Score=94.09 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=35.6
Q ss_pred hcCCCceEEccccccccccch--hhHHHhhhhhhhhh-------hCCCceeccCCCcCC
Q 013955 159 GQCKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLA-------SARPWMVTQGNHEKE 208 (433)
Q Consensus 159 ~~~~pd~vl~~GD~~~~~~~~--~~w~~~~~~~~~l~-------~~iP~~~v~GNHD~~ 208 (433)
...+||+||++||+++..... ..|....+.+..+. ..+|++.++||||..
T Consensus 42 ~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 42 QRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 478999999999999875532 34554433333332 158999999999995
No 50
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.94 E-value=6.1e-09 Score=87.42 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=68.6
Q ss_pred EEEecCCCCCChHHHHHHhh--cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccc
Q 013955 140 AVAGDLGQTGWTKSTLDHIG--QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (433)
Q Consensus 140 ~~~gD~~~~~~~~~~l~~i~--~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~ 217 (433)
+++||+|.. ...++.+. ..++|+++++||+.. ..++ .+..+ ...|++.+.||||
T Consensus 1 ~viSDtH~~---~~~~~~~~~~~~~~d~ii~~GD~~~-----~~~~----~~~~~-~~~~~~~V~GN~D----------- 56 (129)
T cd07403 1 LVISDTESP---ALYSPEIKVRLEGVDLILSAGDLPK-----EYLE----YLVTM-LNVPVYYVHGNHD----------- 56 (129)
T ss_pred CeeccccCc---cccchHHHhhCCCCCEEEECCCCCh-----HHHH----HHHHH-cCCCEEEEeCCCc-----------
Confidence 478999833 22333332 588999999999842 1122 22222 2468999999999
Q ss_pred cccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCC
Q 013955 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (433)
Q Consensus 218 ~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (433)
.+|+++|+|++......
T Consensus 57 ---------------------------------------------------------------~~Ilv~H~pp~~~~~~~ 73 (129)
T cd07403 57 ---------------------------------------------------------------VDILLTHAPPAGIGDGE 73 (129)
T ss_pred ---------------------------------------------------------------cCEEEECCCCCcCcCcc
Confidence 25788888876543211
Q ss_pred CCCChhHHHHHHHHHHHcCCcEEEecCcccceee
Q 013955 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (433)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 331 (433)
. ......+.+.+++.+++++++|+||+|.....
T Consensus 74 ~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 74 D-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred c-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 1 11123567888889999999999999976543
No 51
>PRK09453 phosphodiesterase; Provisional
Probab=98.92 E-value=3.8e-08 Score=87.84 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHH---hhhhhhhhhh-CCCceeccCCCcCC
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDT---FGELVQPLAS-ARPWMVTQGNHEKE 208 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~---~~~~~~~l~~-~iP~~~v~GNHD~~ 208 (433)
+|++++||+|.+.. .+++++.+.+.++|.++++||+++.+.. ..|.. ..+.++.+.. ..+++.+.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~-~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPR-NPLPEGYAPKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcC-CCCccccCHHHHHHHHHhcCCceEEEccCCcch
Confidence 58999999995432 2345566667899999999999864331 11110 1122232322 26899999999973
No 52
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.90 E-value=1.1e-07 Score=94.60 Aligned_cols=44 Identities=23% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCeEEEEEecCCCCCCh-------------HHHHHHhhcCCCceEEccccccccccc
Q 013955 135 FPITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM 178 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~~-------------~~~l~~i~~~~pd~vl~~GD~~~~~~~ 178 (433)
+.+||++++|+|.+... .++++.+.+.++|+||++||+.+...+
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~P 58 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKP 58 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCC
Confidence 56899999999976321 234445568899999999999987654
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.86 E-value=2.4e-08 Score=93.85 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=90.2
Q ss_pred eEEEEEecCCCCC-------C---hHHHHHHhhcCCCc-eEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCC
Q 013955 137 ITFAVAGDLGQTG-------W---TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (433)
Q Consensus 137 ~~f~~~gD~~~~~-------~---~~~~l~~i~~~~pd-~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNH 205 (433)
++|+.++|+|... . ....++++++.+|| +++.+||++....... +......++.+...-.-+.++|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~~g~d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNALGYDAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHhcCCCEEeeccc
Confidence 5799999998432 1 13566677777888 7799999987655321 211122222232223456788999
Q ss_pred cCCCCCcccccccccccccccCC---C----C--C-CCCCCceEEEEeCeEE--EEEEcccCCCC----------CChHH
Q 013955 206 EKESIPLIMDAFQSYNARWKMPF---E----E--S-GSNSNLYYSFDVAGAH--LIMLGSYADYD----------EYSDQ 263 (433)
Q Consensus 206 D~~~~~~~~~~~~~y~~~~~~p~---~----~--~-~~~~~~~ys~~~g~v~--fi~lds~~~~~----------~~~~Q 263 (433)
|+..... .+.........|. + . . ......|-.++.++++ |+.+.+..... .....
T Consensus 80 e~d~g~~---~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
T cd00845 80 EFDYGLD---ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDL 156 (252)
T ss_pred cccccHH---HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCH
Confidence 9853221 1111111111110 0 0 0 0111335566778755 45444321100 00122
Q ss_pred HHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCccccee
Q 013955 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (433)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 330 (433)
.+.+++..++.. .+.+.+|++.|.|... ...+.+.+ .++|++|+||.|....
T Consensus 157 ~~~~~~~~~~~~-~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 157 AEAVAVAEELLA-EGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 333433222222 2567899999987532 11222222 5899999999998654
No 54
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.84 E-value=2.3e-07 Score=90.98 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=47.6
Q ss_pred eEEEEEecCCCCCCh-------------HHHHHHhhcCCCceEEcccccccccc-ch-hhHHHhhh-hhhhhhh-CCCce
Q 013955 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADY-MQ-HRWDTFGE-LVQPLAS-ARPWM 199 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~l~~i~~~~pd~vl~~GD~~~~~~-~~-~~w~~~~~-~~~~l~~-~iP~~ 199 (433)
+||+.+||+|.+... +++++.+.+.+||+||++||+++... .. .......+ +++.+.. .+|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 589999999976431 12334445889999999999997642 21 12222222 2334433 59999
Q ss_pred eccCCCcCC
Q 013955 200 VTQGNHEKE 208 (433)
Q Consensus 200 ~v~GNHD~~ 208 (433)
.++||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999984
No 55
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.80 E-value=1e-07 Score=89.81 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=88.5
Q ss_pred eEEEEEecCCCCCC-----------hHHHHHHhhcCCCc-eEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCC
Q 013955 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGN 204 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~l~~i~~~~pd-~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GN 204 (433)
++++.+.|+|.-.. ....++++++.+|+ +++.+||++..... ..+..-...++.+..--.-+.++||
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~-~~~~~g~~~~~~l~~l~~d~~~~GN 79 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLL-STATKGKQMVPVLNALGVDLACFGN 79 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccc-hhhcCCccHHHHHHhcCCcEEeecc
Confidence 46788888863111 13455666667788 99999999865432 1121111122222221233668999
Q ss_pred CcCCCCCcccccccccccccccCC---C----CC-C--CCCCceEEEEeCeEE--EEEEcccCCC------CC---ChHH
Q 013955 205 HEKESIPLIMDAFQSYNARWKMPF---E----ES-G--SNSNLYYSFDVAGAH--LIMLGSYADY------DE---YSDQ 263 (433)
Q Consensus 205 HD~~~~~~~~~~~~~y~~~~~~p~---~----~~-~--~~~~~~ys~~~g~v~--fi~lds~~~~------~~---~~~Q 263 (433)
||+..... .+....+....|. | .. . ..-..|..++.++++ |+.+.+.... .. ...-
T Consensus 80 Hefd~g~~---~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~ 156 (257)
T cd07406 80 HEFDFGED---QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDY 156 (257)
T ss_pred cccccCHH---HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCH
Confidence 99953221 1111111111110 0 00 0 012456778888865 4555442111 00 1122
Q ss_pred HHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
.+.+++.+++..+.+++.+|++.|.+... . ..+.+.+ .++|++|+||.|...
T Consensus 157 ~~~~~~~v~~~~~~~~D~iVvl~H~g~~~-----------d-~~la~~~--~~iD~IlgGH~H~~~ 208 (257)
T cd07406 157 VETARELVDELREQGADLIIALTHMRLPN-----------D-KRLAREV--PEIDLILGGHDHEYI 208 (257)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCchh-----------h-HHHHHhC--CCCceEEecccceeE
Confidence 33344444333333677899999997421 0 1222222 479999999999865
No 56
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.79 E-value=1.2e-07 Score=90.44 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=91.8
Q ss_pred eEEEEEecCCCCCC-----------------hHHHHHHhhcCCCceEEc-cccccccccchhhHH---------Hhhhhh
Q 013955 137 ITFAVAGDLGQTGW-----------------TKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRWD---------TFGELV 189 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-----------------~~~~l~~i~~~~pd~vl~-~GD~~~~~~~~~~w~---------~~~~~~ 189 (433)
++|+.++|+|..-. ....++++++.+|+.+++ +||++..... ..+. ...+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPL-ADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHH-HHHhhhcccCCCChHHHHH
Confidence 47888888874310 134556666678888777 9999875532 1121 122222
Q ss_pred hhhhhCCCceeccCCCcCCCCCcccccccccccccccCC---C----C-CCCCCCceEEEEeC-eEEEEEEcccCCC---
Q 013955 190 QPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----E-SGSNSNLYYSFDVA-GAHLIMLGSYADY--- 257 (433)
Q Consensus 190 ~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~---~----~-~~~~~~~~ys~~~g-~v~fi~lds~~~~--- 257 (433)
..+ -+-+.++||||+..... .+....+....|. | . .......|.-++.+ ++++-++.-....
T Consensus 80 n~~---g~d~~~lGNHe~d~g~~---~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~ 153 (277)
T cd07410 80 NAL---GYDAGTLGNHEFNYGLD---YLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPN 153 (277)
T ss_pred Hhc---CCCEEeecccCcccCHH---HHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCccccc
Confidence 222 23466789999853211 1111111111111 0 0 01112445567888 8665554421110
Q ss_pred ------------CCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHH-cCCcEEEecC
Q 013955 258 ------------DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGH 324 (433)
Q Consensus 258 ------------~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH 324 (433)
....+..++..+.|++ .+++.+|+++|.+........ .. .......|.++ .++|++|+||
T Consensus 154 ~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~-~~---~~~~~~~la~~~~~vD~IlgGH 226 (277)
T cd07410 154 WEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES-LT---GENAAYELAEEVPGIDAILTGH 226 (277)
T ss_pred ccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc-cC---CccHHHHHHhcCCCCcEEEeCC
Confidence 0112234444445544 256789999999865432100 01 11122334444 4899999999
Q ss_pred cccce
Q 013955 325 VHAYE 329 (433)
Q Consensus 325 ~H~y~ 329 (433)
.|...
T Consensus 227 sH~~~ 231 (277)
T cd07410 227 QHRRF 231 (277)
T ss_pred Ccccc
Confidence 99754
No 57
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.77 E-value=1.8e-07 Score=79.87 Aligned_cols=165 Identities=19% Similarity=0.265 Sum_probs=86.8
Q ss_pred CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEE
Q 013955 161 CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYS 240 (433)
Q Consensus 161 ~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys 240 (433)
..-|.|++.||+......++.-.. ++++..+. .+ -+.+.||||+... .. ....+ .+|.. .. -..-.
T Consensus 42 ~~eDiVllpGDiSWaM~l~ea~~D-l~~i~~LP-G~-K~m~rGNHDYWw~-s~----skl~n--~lp~~-l~---~~n~~ 107 (230)
T COG1768 42 SPEDIVLLPGDISWAMRLEEAEED-LRFIGDLP-GT-KYMIRGNHDYWWS-SI----SKLNN--ALPPI-LF---YLNNG 107 (230)
T ss_pred ChhhEEEecccchhheechhhhhh-hhhhhcCC-Cc-EEEEecCCccccc-hH----HHHHh--hcCch-Hh---hhccc
Confidence 345799999999887655332222 23344332 12 3568999999642 11 11111 11210 00 00011
Q ss_pred EEeCeEEEEEEccc----CCCCCChHH--------HHHHHH-HhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHH
Q 013955 241 FDVAGAHLIMLGSY----ADYDEYSDQ--------YRWLKD-DLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAI 307 (433)
Q Consensus 241 ~~~g~v~fi~lds~----~~~~~~~~Q--------~~WL~~-~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~ 307 (433)
|.++++.++..-.. .++.+..+| ..-|+. ..++.++ ...-.|||.|+|+++..... ..
T Consensus 108 f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k-~~~~fivM~HYPP~s~~~t~--------~~ 178 (230)
T COG1768 108 FELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPK-GVSKFIVMTHYPPFSDDGTP--------GP 178 (230)
T ss_pred eeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhccc-CcCeEEEEEecCCCCCCCCC--------cc
Confidence 44455444433221 112222222 223333 2233333 44458999999998764321 35
Q ss_pred HHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECC
Q 013955 308 MEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (433)
Q Consensus 308 l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~ 351 (433)
+.+++++++|+.++.||.|.-.|-.+-. .+-.|+-|+.+.+
T Consensus 179 ~sevlee~rv~~~lyGHlHgv~~p~~~~---s~v~Gi~y~Lvaa 219 (230)
T COG1768 179 FSEVLEEGRVSKCLYGHLHGVPRPNIGF---SNVRGIEYMLVAA 219 (230)
T ss_pred hHHHHhhcceeeEEeeeccCCCCCCCCc---ccccCceEEEEec
Confidence 7778889999999999999887644311 1234777766543
No 58
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.74 E-value=3.1e-08 Score=90.82 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=94.9
Q ss_pred EEEecCCCCCChH---HHHHHhh----cCCCceEEccccccccccc--h---hhHHH-hhhhhhhhhhCCCceeccCCCc
Q 013955 140 AVAGDLGQTGWTK---STLDHIG----QCKYDVHLLPGDLSYADYM--Q---HRWDT-FGELVQPLASARPWMVTQGNHE 206 (433)
Q Consensus 140 ~~~gD~~~~~~~~---~~l~~i~----~~~pd~vl~~GD~~~~~~~--~---~~w~~-~~~~~~~l~~~iP~~~v~GNHD 206 (433)
++++|+|.+.... .....+. ..++|.++++||+++.-.. . ..... +...++.....++++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4789999765432 2222222 2599999999999964211 1 11111 1333444455699999999999
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEe
Q 013955 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (433)
Q Consensus 207 ~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (433)
..... .. ........ .......+.+++.+++++-... +........|+...+..... .+.++..
T Consensus 81 ~~~~~-----~~--~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~~---~~~~~~~ 144 (217)
T cd07398 81 FLLGD-----FF--AEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPYD---QLLFLNR 144 (217)
T ss_pred HHHHh-----HH--HHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHHH---HHHHhcc
Confidence 85311 11 00000000 0011115677888888876532 22234444444443221100 0000000
Q ss_pred ccc---------ccCC----CCCC--CCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECC
Q 013955 287 HVP---------WYNS----NEAH--QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (433)
Q Consensus 287 H~P---------~~~~----~~~~--~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~ 351 (433)
+.. ...+ .... ........+.+..++++++++++++||+|....... +++.|+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~--------~~~~~~n~G~ 216 (217)
T cd07398 145 PLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHEL--------DGKLYINLGD 216 (217)
T ss_pred hHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEE--------CCEEEEECCC
Confidence 000 0000 0000 001113446667778889999999999998765441 3677888775
No 59
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.66 E-value=7.4e-08 Score=85.51 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHHhh-cCCCceEEccccccccccc-hhhHHHh-hhhhhhhh-------------------hCCCceeccCCCcCCC
Q 013955 154 TLDHIG-QCKYDVHLLPGDLSYADYM-QHRWDTF-GELVQPLA-------------------SARPWMVTQGNHEKES 209 (433)
Q Consensus 154 ~l~~i~-~~~pd~vl~~GD~~~~~~~-~~~w~~~-~~~~~~l~-------------------~~iP~~~v~GNHD~~~ 209 (433)
..+.+. ..+||.|+++||+++..-. +++|... .++.+-+. ..+|++.++||||...
T Consensus 35 ~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 35 IVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 344443 6799999999999965321 3344321 12212111 1389999999999953
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.64 E-value=1.3e-06 Score=82.00 Aligned_cols=182 Identities=15% Similarity=0.105 Sum_probs=97.2
Q ss_pred EEEEecCCCCCChHHHHHHh---h---cCCCceEEccccccccccch-----------hhHHHhhhhhhhhh-hCCCcee
Q 013955 139 FAVAGDLGQTGWTKSTLDHI---G---QCKYDVHLLPGDLSYADYMQ-----------HRWDTFGELVQPLA-SARPWMV 200 (433)
Q Consensus 139 f~~~gD~~~~~~~~~~l~~i---~---~~~pd~vl~~GD~~~~~~~~-----------~~w~~~~~~~~~l~-~~iP~~~ 200 (433)
|++.||+|.. ...+.+.+ . ..++|++|++||+....... ..+..|.+.++... ..+|+++
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 5789999753 44444433 2 35799999999995322111 12233333333322 2477899
Q ss_pred ccCCCcCCCCCccccccccc-ccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC---CC--------CChHHHHHH-
Q 013955 201 TQGNHEKESIPLIMDAFQSY-NARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD---YD--------EYSDQYRWL- 267 (433)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~y-~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~---~~--------~~~~Q~~WL- 267 (433)
+.||||... .+... ...|..|. -..-.....++++|++|..|..... +. -.+.++..+
T Consensus 79 i~GNHE~~~------~l~~l~~gg~v~~N---i~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y 149 (262)
T cd00844 79 IGGNHEASN------YLWELPYGGWVAPN---IYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAY 149 (262)
T ss_pred ECCCCCCHH------HHHhhcCCCeecCc---EEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhh
Confidence 999999631 11100 00111110 0000111245678999999876221 11 012333221
Q ss_pred ------HHHhhccccCCCCeEEEEecccccCCCCCCCC---------------CChhHHHHHHHHHHHcCCcEEEecCcc
Q 013955 268 ------KDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG---------------EGDGMMAIMEPLLYAASVDLVLAGHVH 326 (433)
Q Consensus 268 ------~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~VdlvlsGH~H 326 (433)
.+.|..... .. -|+++|.|+......... ........+..++++.++..+|+||.|
T Consensus 150 ~~r~~~~~kl~~~~~-~v--DIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H 226 (262)
T cd00844 150 HVRNIEVFKLKQLKQ-PI--DIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLH 226 (262)
T ss_pred hhhHHHHHHHHhcCC-CC--cEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCC
Confidence 111222211 23 599999998765432110 001234678899999999999999999
Q ss_pred c-ceeeeec
Q 013955 327 A-YERSIRV 334 (433)
Q Consensus 327 ~-y~r~~~~ 334 (433)
. |++..|.
T Consensus 227 ~~f~~~~~~ 235 (262)
T cd00844 227 VKFAALVPH 235 (262)
T ss_pred cccceecCC
Confidence 8 6666553
No 61
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.7e-07 Score=93.84 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=53.1
Q ss_pred eEEEEEecCCCC-CC-------------hHHHHHHhhcCCCceEEccccccccccchh-hHHHhhhhhhhhhh-CCCcee
Q 013955 137 ITFAVAGDLGQT-GW-------------TKSTLDHIGQCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPLAS-ARPWMV 200 (433)
Q Consensus 137 ~~f~~~gD~~~~-~~-------------~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~-~w~~~~~~~~~l~~-~iP~~~ 200 (433)
+||+.++|+|.+ .. ...+++.+.+.++||||++||+.+...+.. .-..+.+.++.+.. .+|+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 589999999988 21 123455566899999999999998765522 22345555555543 599999
Q ss_pred ccCCCcCCC
Q 013955 201 TQGNHEKES 209 (433)
Q Consensus 201 v~GNHD~~~ 209 (433)
+.||||...
T Consensus 81 I~GNHD~~~ 89 (390)
T COG0420 81 IAGNHDSPS 89 (390)
T ss_pred ecCCCCchh
Confidence 999999854
No 62
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.61 E-value=8.5e-07 Score=85.00 Aligned_cols=204 Identities=17% Similarity=0.154 Sum_probs=96.8
Q ss_pred eEEEEEecCCCCCC---------------hHHHHHHhhcCCCc-eEEccccccccccchhhH---HHhhhhhhhhhhCCC
Q 013955 137 ITFAVAGDLGQTGW---------------TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRW---DTFGELVQPLASARP 197 (433)
Q Consensus 137 ~~f~~~gD~~~~~~---------------~~~~l~~i~~~~pd-~vl~~GD~~~~~~~~~~w---~~~~~~~~~l~~~iP 197 (433)
++++.++|+|..-. ....++++++.+++ ++|.+||++........+ ....+.+..+ .+-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~--g~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAM--GVD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhh--CCe
Confidence 47889999974211 12344555555565 899999998654431111 1112222222 122
Q ss_pred ceeccCCCcCCCCCcccccccccc------------------ccccc-----CCCCCC-CCCCceEEEEeCeEE--EEEE
Q 013955 198 WMVTQGNHEKESIPLIMDAFQSYN------------------ARWKM-----PFEESG-SNSNLYYSFDVAGAH--LIML 251 (433)
Q Consensus 198 ~~~v~GNHD~~~~~~~~~~~~~y~------------------~~~~~-----p~~~~~-~~~~~~ys~~~g~v~--fi~l 251 (433)
+.++||||+..... .+..+. ..|.. .....+ ..-..|.-++.++++ ||.+
T Consensus 79 -a~t~GNHefd~G~~---~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl 154 (288)
T cd07412 79 -ASAVGNHEFDEGYA---ELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGA 154 (288)
T ss_pred -eeeecccccccCHH---HHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEee
Confidence 46889999963221 111110 11110 000000 111344556788855 4555
Q ss_pred cccC-CC--C-------CChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHH--cCCcE
Q 013955 252 GSYA-DY--D-------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA--ASVDL 319 (433)
Q Consensus 252 ds~~-~~--~-------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~Vdl 319 (433)
-+.. .. . ....-.+-+++.+++.+..+.+.+|++.|........... ..........++.+ .++|+
T Consensus 155 ~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~ 232 (288)
T cd07412 155 VTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDV 232 (288)
T ss_pred cCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCE
Confidence 3211 00 0 0122234455544444433677899999987643221110 00011122344444 37999
Q ss_pred EEecCcccceeeeeccCCccCCCccEEEEECCCC
Q 013955 320 VLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGG 353 (433)
Q Consensus 320 vlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG 353 (433)
+|.||.|...... . ...+++..+.+|+-|
T Consensus 233 IlgGHsH~~~~~~-~----~~~~~~~v~q~g~~g 261 (288)
T cd07412 233 VFAGHTHQAYNCT-V----PAGNPRLVTQAGSYG 261 (288)
T ss_pred EEeCccCcccccc-c----cCcCCEEEEecChhh
Confidence 9999999875321 0 012456555555443
No 63
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.52 E-value=7.7e-06 Score=71.65 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=96.0
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccc
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMD 215 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~ 215 (433)
++++++||+|.... .....+.....++|+|||+||.+..... ..|. .. -..+++.|.||.|.....
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~-~~l~---~~-----~~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL-DALE---GG-----LAAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch-HHhh---cc-----cccceEEEEccCCCcccc----
Confidence 68999999997753 2334455567899999999999875432 1111 10 137899999999985310
Q ss_pred cccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCC
Q 013955 216 AFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (433)
Q Consensus 216 ~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (433)
-..| .--.+.++++ +|.+.|--.+....
T Consensus 69 --------~~~p---------~~~~~~~~g~-----------------------------------ki~l~HGh~~~~~~ 96 (172)
T COG0622 69 --------EELP---------EELVLEVGGV-----------------------------------KIFLTHGHLYFVKT 96 (172)
T ss_pred --------ccCC---------hhHeEEECCE-----------------------------------EEEEECCCcccccc
Confidence 0111 1112333332 45555643222111
Q ss_pred CCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCCCcccccCCCCCCCcceeEec
Q 013955 296 AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYKNPQPDWSVFREA 375 (433)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~~~~~~~~~~~p~~~~~~~~ 375 (433)
....+..+-++.++|+++.||+|...... .+|++++.-|+...+.+ . .
T Consensus 97 --------~~~~l~~la~~~~~Dvli~GHTH~p~~~~--------~~~i~~vNPGS~s~pr~-----~--~--------- 144 (172)
T COG0622 97 --------DLSLLEYLAKELGADVLIFGHTHKPVAEK--------VGGILLVNPGSVSGPRG-----G--N--------- 144 (172)
T ss_pred --------CHHHHHHHHHhcCCCEEEECCCCcccEEE--------ECCEEEEcCCCcCCCCC-----C--C---------
Confidence 12455566667789999999999865544 24777787776543211 0 1
Q ss_pred cccEEEEEEEcCceEEEEEEE
Q 013955 376 SFGHGELKIVNSTHAFWSWHR 396 (433)
Q Consensus 376 ~~G~~~l~v~~~~~l~~~~~~ 396 (433)
.-+|+.+++.+ ..+...+..
T Consensus 145 ~~sy~il~~~~-~~~~~~~~~ 164 (172)
T COG0622 145 PASYAILDVDN-LEVEVLFLE 164 (172)
T ss_pred CcEEEEEEcCC-CEEEEEEee
Confidence 12678888754 346555554
No 64
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.51 E-value=4.8e-06 Score=77.81 Aligned_cols=190 Identities=17% Similarity=0.217 Sum_probs=99.3
Q ss_pred EEEEEecCCCCCCh----HHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCc
Q 013955 138 TFAVAGDLGQTGWT----KSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPL 212 (433)
Q Consensus 138 ~f~~~gD~~~~~~~----~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~ 212 (433)
|++++||+ .+... ...+++++ +.++||++..||++-.+.... ....+.+..+ .+-+ .+.|||++... .
T Consensus 1 ~ilfigdi-~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~--~~~~~~L~~~--G~D~-iTlGNH~fD~g-e 73 (255)
T cd07382 1 KILFIGDI-VGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT--PKIAKELLSA--GVDV-ITMGNHTWDKK-E 73 (255)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC--HHHHHHHHhc--CCCE-EEecccccCcc-h
Confidence 57899998 22222 33445554 568999999999986542111 1111222221 2444 46699999643 1
Q ss_pred cccccccccccc---ccCCCC-CCCCCCceEEEEeCeEEEEEEcccCC-C-CCChHHHHHHHHHhhccccCCCCeEEEEe
Q 013955 213 IMDAFQSYNARW---KMPFEE-SGSNSNLYYSFDVAGAHLIMLGSYAD-Y-DEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (433)
Q Consensus 213 ~~~~~~~y~~~~---~~p~~~-~~~~~~~~ys~~~g~v~fi~lds~~~-~-~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (433)
...+.+.. -.|.+- .......|..++.+++++-+++-... + .....-.+-+++.+++.+. +.+.+||.+
T Consensus 74 ----l~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV~~ 148 (255)
T cd07382 74 ----ILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFVDF 148 (255)
T ss_pred ----HHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEEEE
Confidence 11111111 112111 11123456777888866555543211 1 1111223345555555544 567899999
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEE-ECCCCCCC
Q 013955 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYIT-IGDGGNKE 356 (433)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~-~G~gG~~~ 356 (433)
|.-.. .....+.. .-..+||+++.||+|.......+ -|+|+.|++ +|.-|...
T Consensus 149 H~g~t-----------sEk~ala~-~ldg~VdvIvGtHTHv~t~d~~i-----l~~gTa~itd~Gm~G~~~ 202 (255)
T cd07382 149 HAEAT-----------SEKIALGW-YLDGRVSAVVGTHTHVQTADERI-----LPGGTAYITDVGMTGPYD 202 (255)
T ss_pred CCCCC-----------HHHHHHHH-hCCCCceEEEeCCCCccCCccEE-----eeCCeEEEecCccccCCC
Confidence 98421 11122332 22336999999999986333222 157998887 34445543
No 65
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.51 E-value=1.2e-06 Score=82.65 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=87.5
Q ss_pred eEEEEEecCCCCCC-----------hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhC-CCceeccCC
Q 013955 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA-RPWMVTQGN 204 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~-iP~~~v~GN 204 (433)
++++.++|+|..-. ....++++++.++++++.+||++..... ..+..-...++.+... ..+ .++||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ln~~g~d~-~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SDLDKGETIIKIMNAVGYDA-VTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hhhcCCcHHHHHHHhcCCcE-Ecccc
Confidence 47899999985321 1234445544467899999999875432 1111111122222222 344 57899
Q ss_pred CcCCCCCcccccccccccccccCCC-------CCCC-CCCceEEEEeC-eE--EEEEEcccC-CC--CC-------ChHH
Q 013955 205 HEKESIPLIMDAFQSYNARWKMPFE-------ESGS-NSNLYYSFDVA-GA--HLIMLGSYA-DY--DE-------YSDQ 263 (433)
Q Consensus 205 HD~~~~~~~~~~~~~y~~~~~~p~~-------~~~~-~~~~~ys~~~g-~v--~fi~lds~~-~~--~~-------~~~Q 263 (433)
||+..... .+....+.+..|.- ..+. .-..|--++.+ ++ -|+.+-+.. .. .+ ...-
T Consensus 79 Hefd~G~~---~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~ 155 (257)
T cd07408 79 HEFDYGLD---RLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDP 155 (257)
T ss_pred ccccCCHH---HHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecH
Confidence 99963211 12222222222210 0010 01234445677 64 455554421 00 00 0111
Q ss_pred HHHHHHH-hhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCccccee
Q 013955 264 YRWLKDD-LSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYER 330 (433)
Q Consensus 264 ~~WL~~~-L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 330 (433)
.+-+++. ..+..+.+++.+|++.|.+....... . ....+.. .-.++|++|.||.|....
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~---~---~~~~la~--~~~giDvIigGH~H~~~~ 215 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP---W---TSTELAA--NVTGIDLIIDGHSHTTIE 215 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC---c---cHHHHHH--hCCCceEEEeCCCccccc
Confidence 2223333 22222236778999999886543210 0 1122222 124799999999998653
No 66
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.49 E-value=6.6e-06 Score=77.10 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=106.8
Q ss_pred eEEEEEecCCCCCChH----HHHHHhh-cCCCceEEccccccccc-cchhhHHHhhhhhhhhhh-CCCceeccCCCcCCC
Q 013955 137 ITFAVAGDLGQTGWTK----STLDHIG-QCKYDVHLLPGDLSYAD-YMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKES 209 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~l~~i~-~~~pd~vl~~GD~~~~~-~~~~~w~~~~~~~~~l~~-~iP~~~v~GNHD~~~ 209 (433)
+|++++||. .+.... ..+..++ +.++||+|..||++-.+ +... +..+.|.. .+-++. .|||.++.
T Consensus 1 m~ilfiGDi-~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~------~~~~~L~~~GvDviT-~GNH~~Dk 72 (266)
T TIGR00282 1 IKFLFIGDV-YGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTL------KIYEFLKQSGVNYIT-MGNHTWFQ 72 (266)
T ss_pred CeEEEEEec-CCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCH------HHHHHHHhcCCCEEE-ccchhccC
Confidence 589999998 332223 3444454 56799999999998543 2111 11222222 366665 49999964
Q ss_pred CCcc--cccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccC--CCCC--ChHHHHHHHHHhhccccCCCCeEE
Q 013955 210 IPLI--MDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA--DYDE--YSDQYRWLKDDLSKVDRKKTPWLL 283 (433)
Q Consensus 210 ~~~~--~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~--~~~~--~~~Q~~WL~~~L~~~~~~~~~~~i 283 (433)
.... ........+..+.|. ...+..+..+..++.++-+++-.. ...+ ...-.+-+++.+++.+. +++.+|
T Consensus 73 ge~~~~i~~~~~~lrpanyp~---~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk~-~~d~II 148 (266)
T TIGR00282 73 KLILDVVINQKDLVRPLNFDT---SFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLKK-DCDLIF 148 (266)
T ss_pred cHHHHHHhccccccccCCCCC---CCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhhc-CCCEEE
Confidence 3210 000011111112222 122345666778876666555321 1111 11123334555554443 466899
Q ss_pred EEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEE-ECCCCCCC
Q 013955 284 VLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYIT-IGDGGNKE 356 (433)
Q Consensus 284 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~-~G~gG~~~ 356 (433)
|.+|.-.. ..+.....+-+.+|++|+.-|+|....-..+. |+|+.|++ .|.-|...
T Consensus 149 Vd~Haeat------------sEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il-----~~gtayitD~Gm~G~~~ 205 (266)
T TIGR00282 149 VDFHAETT------------SEKNAFGMAFDGYVTAVVGTHTHVPTADLRIL-----PKGTAYITDVGMTGPFG 205 (266)
T ss_pred EEeCCCCH------------HHHHHHHHHhCCCccEEEeCCCCCCCCcceeC-----CCCCEEEecCCcccCcc
Confidence 99997531 12455667778899999999999865444333 67999998 46556543
No 67
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.48 E-value=2e-06 Score=81.39 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=79.1
Q ss_pred HHHHHhhcC-CCceE-EccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCC--
Q 013955 153 STLDHIGQC-KYDVH-LLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF-- 228 (433)
Q Consensus 153 ~~l~~i~~~-~pd~v-l~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~-- 228 (433)
..++++++. ++|.+ +.+||+...... ..+......++. ...+++.++.||||+..... .+....+.+..|.
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~-l~~~g~da~~GNHefd~g~~---~l~~~~~~~~~~~l~ 114 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDA-LNALGVDAMVGHWEFTYGPE---RVRELFGRLNWPFLA 114 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHH-HHhhCCeEEecccccccCHH---HHHHHHhhCCCCEEE
Confidence 345566666 89977 569999976543 122211122222 22366666669999964321 1111112222221
Q ss_pred -C----CCC-CCCCceEEEEeCeEE--EEEEcccCCCC--C--------ChHHHHHHHHHhhccc-cCCCCeEEEEeccc
Q 013955 229 -E----ESG-SNSNLYYSFDVAGAH--LIMLGSYADYD--E--------YSDQYRWLKDDLSKVD-RKKTPWLLVLLHVP 289 (433)
Q Consensus 229 -~----~~~-~~~~~~ys~~~g~v~--fi~lds~~~~~--~--------~~~Q~~WL~~~L~~~~-~~~~~~~iv~~H~P 289 (433)
+ ..+ ..-..|..++.++++ ||.+.+..... . .....+.+++.+++.. ..+.+.+|++.|-+
T Consensus 115 aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g 194 (264)
T cd07411 115 ANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNG 194 (264)
T ss_pred EEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 001 111335556788755 55555421100 0 1233445555433322 23567899999987
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHH-cCCcEEEecCcccce
Q 013955 290 WYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYE 329 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 329 (433)
.... .. +.++ .++|++|+||.|...
T Consensus 195 ~~~~------------~~---la~~~~~iDlilgGH~H~~~ 220 (264)
T cd07411 195 LPVD------------VE---LAERVPGIDVILSGHTHERT 220 (264)
T ss_pred chhh------------HH---HHhcCCCCcEEEeCcccccc
Confidence 4210 11 2222 479999999999753
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.40 E-value=2.8e-06 Score=81.11 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=78.6
Q ss_pred HHHHhhcCCCc-eEEccccccccccchhh--HHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCC--
Q 013955 154 TLDHIGQCKYD-VHLLPGDLSYADYMQHR--WDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF-- 228 (433)
Q Consensus 154 ~l~~i~~~~pd-~vl~~GD~~~~~~~~~~--w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~-- 228 (433)
.++++++.+++ +++.+||++........ .+...+.+..+ .+. +.++||||+..... .+....+....|.
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~--g~D-~~~lGNHefd~G~~---~l~~~~~~~~~p~l~ 113 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL--GYD-AMTLGNHEFDDGVE---GLAPFLNNLKFPVLS 113 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc--CCC-EEEeccccccCCHH---HHHHHHHhCCCCEEE
Confidence 45555556777 55669999876543111 11222222222 134 45789999964322 1111111111111
Q ss_pred -C---CCC-----CCCCceEEEEeCeEE--EEEEcccCC--C-C--C---ChHHHHHHHHHhhccccCCCCeEEEEeccc
Q 013955 229 -E---ESG-----SNSNLYYSFDVAGAH--LIMLGSYAD--Y-D--E---YSDQYRWLKDDLSKVDRKKTPWLLVLLHVP 289 (433)
Q Consensus 229 -~---~~~-----~~~~~~ys~~~g~v~--fi~lds~~~--~-~--~---~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P 289 (433)
+ ... ..-..|..++.++++ |+.+-+... . . . ..+..+.+++.+++.+..+.+.+|++.|..
T Consensus 114 aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G 193 (281)
T cd07409 114 ANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSG 193 (281)
T ss_pred EeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 0 000 011345567788855 455443211 0 0 0 123345566666665444577899999986
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 290 WYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
... ...+.+-+ .++|++|.||.|...
T Consensus 194 ~~~------------d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 194 YEV------------DKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred chh------------HHHHHHcC--CCCcEEEeCCcCccc
Confidence 321 11222222 479999999999864
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.37 E-value=3.8e-06 Score=86.49 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCeEEEEEecCCCCCCh------HHHHHHhh---------cCCCceEEccccccccccc-------------hhhHHHh
Q 013955 134 QFPITFAVAGDLGQTGWT------KSTLDHIG---------QCKYDVHLLPGDLSYADYM-------------QHRWDTF 185 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------~~~l~~i~---------~~~pd~vl~~GD~~~~~~~-------------~~~w~~~ 185 (433)
....++++++|+|.+... +..++.+. ..+++.+|++||+++..+. ...++.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 467899999999976531 23444555 5679999999999974221 0112344
Q ss_pred hhhhhhhhhCCCceeccCCCcCCC
Q 013955 186 GELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 186 ~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
.+.+..+...+|++.++||||...
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcchh
Confidence 556666666789999999999853
No 70
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=1.2e-06 Score=82.23 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=50.8
Q ss_pred eEEEEEecCCCCCCh-------------HHHHHHhhcCCCceEEccccccccccchh-hHHHhhhhhhhhhh-C-CCcee
Q 013955 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPLAS-A-RPWMV 200 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~l~~i~~~~pd~vl~~GD~~~~~~~~~-~w~~~~~~~~~l~~-~-iP~~~ 200 (433)
+||++++|+|.+... ..+++.+.+.+||+||++||+++...... ....+.+.++.+.. . +|++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999976431 12344455789999999999998765422 22334555666543 3 89999
Q ss_pred ccCCCcCC
Q 013955 201 TQGNHEKE 208 (433)
Q Consensus 201 v~GNHD~~ 208 (433)
++||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999984
No 71
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.28 E-value=1.2e-05 Score=75.10 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEecCCCCCCh------HHHHHHhhcC-----CCceEEccccccccccc-------------hhhHHHhhhhhhhhhhC
Q 013955 140 AVAGDLGQTGWT------KSTLDHIGQC-----KYDVHLLPGDLSYADYM-------------QHRWDTFGELVQPLASA 195 (433)
Q Consensus 140 ~~~gD~~~~~~~------~~~l~~i~~~-----~pd~vl~~GD~~~~~~~-------------~~~w~~~~~~~~~l~~~ 195 (433)
++++|+|.+... +..++.+... ++|.++++||+++.... ...+..+.+.++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 678999975431 2233444333 57999999999975210 11234455566666667
Q ss_pred CCceeccCCCcCC
Q 013955 196 RPWMVTQGNHEKE 208 (433)
Q Consensus 196 iP~~~v~GNHD~~ 208 (433)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999985
No 72
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.27 E-value=5.1e-06 Score=81.18 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCCeEEEEEecCCCCCCh------------------HHHHHHh-hcCCCceEEccccccccccc--hhhHHHhhhhhhhh
Q 013955 134 QFPITFAVAGDLGQTGWT------------------KSTLDHI-GQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPL 192 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------------------~~~l~~i-~~~~pd~vl~~GD~~~~~~~--~~~w~~~~~~~~~l 192 (433)
...+|++.++|+|.-+.. .+..... ...+||.++++||+.+++.. .++|.+..+-++.+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 578999999999864410 1112211 26799999999999986543 45675443334444
Q ss_pred h---hCCCceeccCCCcCCCCCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCC
Q 013955 193 A---SARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD 256 (433)
Q Consensus 193 ~---~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~ 256 (433)
. ..+|++.++||||.+.... .......||..-. ++....|+.|+..|+++|++..
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~---~~~~~i~Rfe~~f------g~~~r~f~v~~~tf~~~d~~~l 183 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNE---LIPEWIDRFESVF------GPTERRFDVGNLTFVMFDSNAL 183 (410)
T ss_pred hCCCCCCeeEEeCCccccccccc---cchhHHHHHHHhh------cchhhhhccCCceeEEeeehhh
Confidence 3 2599999999999964321 1111223332111 2345668999999999998654
No 73
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.24 E-value=2.5e-05 Score=74.39 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=96.0
Q ss_pred CCeEEEEEecCCCCCC--------------hHHHHHHhh----cCCCc-eEEccccccccccchh----hHHHhhhhhhh
Q 013955 135 FPITFAVAGDLGQTGW--------------TKSTLDHIG----QCKYD-VHLLPGDLSYADYMQH----RWDTFGELVQP 191 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~--------------~~~~l~~i~----~~~pd-~vl~~GD~~~~~~~~~----~w~~~~~~~~~ 191 (433)
.+++|+..+|+|..-. ..+.+++++ +.+++ ++|..||......... .+....+.+.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN- 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFR- 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHH-
Confidence 5689999999985311 022233332 34555 6678999987653311 1222222222
Q ss_pred hhhCCCc-eeccCCCcCCCCCcccccccccccccccCC---C-----C--CC-CCCCceEEEEeC-eEE--EEEEcccCC
Q 013955 192 LASARPW-MVTQGNHEKESIPLIMDAFQSYNARWKMPF---E-----E--SG-SNSNLYYSFDVA-GAH--LIMLGSYAD 256 (433)
Q Consensus 192 l~~~iP~-~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~---~-----~--~~-~~~~~~ys~~~g-~v~--fi~lds~~~ 256 (433)
.+++ +.++||||+.........+..+.+....|. | + .. .....|..++.+ +++ +|.+-+...
T Consensus 83 ---~mgyDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~~~ 159 (282)
T cd07407 83 ---MMPYDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFDFK 159 (282)
T ss_pred ---hcCCcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecccc
Confidence 2332 458999999532210000111111111111 0 0 00 111235556665 655 555543211
Q ss_pred -------CCCC--hHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCc-EEEecCc
Q 013955 257 -------YDEY--SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVD-LVLAGHV 325 (433)
Q Consensus 257 -------~~~~--~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~Vd-lvlsGH~ 325 (433)
+... ..+.+|+.+.|++. +.+.+|+++|....... ...+....+.++. ++| ++|.||.
T Consensus 160 ~~~~~~~f~d~~~~~~~~~v~~~l~~~---~~DvIIvlsH~G~~~d~--------~~~~~~~~la~~~~~id~~Ii~GHs 228 (282)
T cd07407 160 GAANGVTVQPVADVVQEPWFQDAINNE---DVDLILVLGHMPVRDDA--------EFKVLHDAIRKIFPDTPIQFLGGHS 228 (282)
T ss_pred cCCCCcEEcCHHHHHHHHHHHHHHHhc---CCCEEEEEeCCCCCCCc--------cHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 1111 12234887777742 56779999999754321 1111122333344 567 7999999
Q ss_pred ccceeeeeccCCccCCCccEEEEECCCCCC
Q 013955 326 HAYERSIRVNNGKPDPCGAVYITIGDGGNK 355 (433)
Q Consensus 326 H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~ 355 (433)
|..... ++ .+++..+.+|.-|..
T Consensus 229 H~~~~~-~~------~~~~~ivq~G~~g~~ 251 (282)
T cd07407 229 HVRDFT-QY------DSSSTGLESGRYLET 251 (282)
T ss_pred ccccce-ec------cCcEEEEeccchhhc
Confidence 975322 11 135555555554444
No 74
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.23 E-value=2.4e-06 Score=77.82 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCC-hHHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
|++++||+|.... ..++++.+. ..++|.++++||+++.+.... +.++.+.. .+++.+.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~------~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESL------ACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHH------HHHHHHhc-CCEEEeECCChHH
Confidence 6899999985421 223444443 246999999999998654321 22222222 4688999999974
No 75
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.23 E-value=7.1e-06 Score=74.22 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=92.4
Q ss_pred EEecCCCCCChH----HHHHHhhcC--CCceEEccccccccccchhhHHHhh----hhhhhhhh-CCCceeccCCCcCCC
Q 013955 141 VAGDLGQTGWTK----STLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFG----ELVQPLAS-ARPWMVTQGNHEKES 209 (433)
Q Consensus 141 ~~gD~~~~~~~~----~~l~~i~~~--~pd~vl~~GD~~~~~~~~~~w~~~~----~~~~~l~~-~iP~~~v~GNHD~~~ 209 (433)
.++|.|.++... -.++-+... +.|.+.++||+++.--....|.+.. ..+..+.+ ..|++.++||||..-
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfll 81 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFLL 81 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHHH
Confidence 689999885432 233444433 5599999999986422222343332 22333344 499999999999732
Q ss_pred CCcccccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeE-EEEecc
Q 013955 210 IPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWL-LVLLHV 288 (433)
Q Consensus 210 ~~~~~~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~-iv~~H~ 288 (433)
. ..+...+. .....+.+-.+++-|-+++++-.- .+.....+..|+....... |. .++.+.
T Consensus 82 ~-------~~f~~~~g-----~~~l~~~~~~~~l~g~~~Ll~HGD-~f~t~~~~y~~~r~~~~~~------~~~~lflnl 142 (237)
T COG2908 82 G-------KRFAQEAG-----GMTLLPDPIVLDLYGKRILLAHGD-TFCTDDRAYQWFRYKVHWA------WLQLLFLNL 142 (237)
T ss_pred H-------HHHHhhcC-----ceEEcCcceeeeecCcEEEEEeCC-cccchHHHHHHHHHHcccH------HHHHHHHHh
Confidence 1 11111111 000012222334444455554321 1222344444444332221 11 111122
Q ss_pred cc----------cCCC--CCC-CCCC----hhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECC
Q 013955 289 PW----------YNSN--EAH-QGEG----DGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (433)
Q Consensus 289 P~----------~~~~--~~~-~~~~----~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~ 351 (433)
|. .+.+ ... .... +...+.....+++++||.+++||+|.-.-.. -.++.|++.|+
T Consensus 143 ~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~--------i~~~~yi~lGd 214 (237)
T COG2908 143 PLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN--------IPGITYINLGD 214 (237)
T ss_pred HHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc--------CCCceEEecCc
Confidence 21 1111 000 0000 1234677788899999999999999854322 23688998886
Q ss_pred CC
Q 013955 352 GG 353 (433)
Q Consensus 352 gG 353 (433)
--
T Consensus 215 W~ 216 (237)
T COG2908 215 WV 216 (237)
T ss_pred ch
Confidence 53
No 76
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.21 E-value=1.8e-05 Score=89.85 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=93.7
Q ss_pred CCeEEEEEecCCCCCC----hHHHHHHhhcCCCceEEc-cccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCC
Q 013955 135 FPITFAVAGDLGQTGW----TKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 135 ~~~~f~~~gD~~~~~~----~~~~l~~i~~~~pd~vl~-~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
..++++.++|+|..-. ....++++++.+|+.+++ +||++..... ..+......++.+...-.-+.++||||+..
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~g~~~~~~ln~lg~d~~~~GNHEfd~ 737 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-SNLLKGLPVLKMMKEMGYDASTFGNHEFDW 737 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-hhhcCChHHHHHHhCcCCCEEEeccccccc
Confidence 4599999999984421 234566667778898766 9999875532 111111112222222123356999999954
Q ss_pred CCccccccccccc--------------ccccC-CC----CCCC---CCCceEEEEeCeEE--EEEEcccC-CC----C--
Q 013955 210 IPLIMDAFQSYNA--------------RWKMP-FE----ESGS---NSNLYYSFDVAGAH--LIMLGSYA-DY----D-- 258 (433)
Q Consensus 210 ~~~~~~~~~~y~~--------------~~~~p-~~----~~~~---~~~~~ys~~~g~v~--fi~lds~~-~~----~-- 258 (433)
... .+..+.. .|.+- .| ..+. ....|.-++.++++ ||.+-+.. .. .
T Consensus 738 g~~---~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~ 814 (1163)
T PRK09419 738 GPD---VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNV 814 (1163)
T ss_pred ChH---HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCc
Confidence 321 1111100 01100 00 0111 11245556788755 55554321 00 0
Q ss_pred ---CChHHHHHHHHHhhccc-cCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCcEEEecCcccce
Q 013955 259 ---EYSDQYRWLKDDLSKVD-RKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (433)
Q Consensus 259 ---~~~~Q~~WL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~ 329 (433)
.-....+.+++..++.+ ..+.+.+|+++|......... +. .....|.++. +||++|.||+|..-
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHHHhCCCCCEEEeCCCCccc
Confidence 01223334444444433 236778999999986432111 11 1233444443 79999999999754
No 77
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.19 E-value=3e-06 Score=84.86 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=50.0
Q ss_pred eEEEEEecCCCCCCh-------------HHHHHHhhcCCCceEEccccccccccchhhH-HHhhhhhhhhhh-CCCceec
Q 013955 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRW-DTFGELVQPLAS-ARPWMVT 201 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w-~~~~~~~~~l~~-~iP~~~v 201 (433)
+||++++|+|.+... ..+++.+.+.+||+||++||+++........ ..+.+++..+.. .+|++++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 589999999986321 1233445688999999999999765432221 233444455543 4899999
Q ss_pred cCCCcCCC
Q 013955 202 QGNHEKES 209 (433)
Q Consensus 202 ~GNHD~~~ 209 (433)
+||||...
T Consensus 81 ~GNHD~~~ 88 (407)
T PRK10966 81 AGNHDSVA 88 (407)
T ss_pred cCCCCChh
Confidence 99999853
No 78
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.16 E-value=3.6e-06 Score=76.64 Aligned_cols=66 Identities=20% Similarity=0.035 Sum_probs=41.8
Q ss_pred EEEecCCCCCC-hHHHHHHhh--------cCCCceEEccccccccccchhhHHHhhhhhhhhh-----hCCCceeccCCC
Q 013955 140 AVAGDLGQTGW-TKSTLDHIG--------QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA-----SARPWMVTQGNH 205 (433)
Q Consensus 140 ~~~gD~~~~~~-~~~~l~~i~--------~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~-----~~iP~~~v~GNH 205 (433)
+++||+|.... ..++++.+. ..+.|.++++||+++.+....+ ..+.+..+. ...+++.++|||
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~---vl~~l~~l~~~~~~~~~~v~~l~GNH 77 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIE---ILWLLYKLEQEAAKAGGKVHFLLGNH 77 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHH---HHHHHHHHHHHHHhcCCeEEEeeCCC
Confidence 47999986532 234454443 3478999999999987653222 222222221 236799999999
Q ss_pred cCC
Q 013955 206 EKE 208 (433)
Q Consensus 206 D~~ 208 (433)
|..
T Consensus 78 E~~ 80 (208)
T cd07425 78 ELM 80 (208)
T ss_pred cHH
Confidence 984
No 79
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.15 E-value=6.8e-06 Score=70.41 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=74.7
Q ss_pred EEEecCCCCCChHHHHHHhh-----cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccc
Q 013955 140 AVAGDLGQTGWTKSTLDHIG-----QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (433)
Q Consensus 140 ~~~gD~~~~~~~~~~l~~i~-----~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~ 214 (433)
+++||.+.. ..+++++++ +.++|++|++||+.-.......|..+..-. ....+|.|++-|||+
T Consensus 1 LV~G~~~G~--l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~--~~~pipTyf~ggn~~-------- 68 (150)
T cd07380 1 LVCGDVNGR--LKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGS--KKVPIPTYFLGGNNP-------- 68 (150)
T ss_pred CeeecCCcc--HHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCC--ccCCCCEEEECCCCC--------
Confidence 467888543 455555543 568999999999986544333444433322 123488999999986
Q ss_pred ccccccccccccCCCCCCCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCC
Q 013955 215 DAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSN 294 (433)
Q Consensus 215 ~~~~~y~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 294 (433)
+.-|+++|.|++...
T Consensus 69 -----------------------------------------------------------------~~DILlTh~wP~gi~ 83 (150)
T cd07380 69 -----------------------------------------------------------------GVDILLTSEWPKGIS 83 (150)
T ss_pred -----------------------------------------------------------------CCCEEECCCCchhhh
Confidence 124778888776543
Q ss_pred CCCC-----CCChhHHHHHHHHHHHcCCcEEEecCccc-ceeeeecc
Q 013955 295 EAHQ-----GEGDGMMAIMEPLLYAASVDLVLAGHVHA-YERSIRVN 335 (433)
Q Consensus 295 ~~~~-----~~~~~~~~~l~~l~~~~~VdlvlsGH~H~-y~r~~~~~ 335 (433)
.... .........+.+++++.++...||||.|. |||. |..
T Consensus 84 ~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~-Pf~ 129 (150)
T cd07380 84 KLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE-PYR 129 (150)
T ss_pred hhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec-Ccc
Confidence 2110 00112346778889999999999999995 5654 443
No 80
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.13 E-value=5.3e-05 Score=72.51 Aligned_cols=184 Identities=20% Similarity=0.209 Sum_probs=85.9
Q ss_pred eEEEEEecCCCCCC-----------hHHHHHHhhc-----CCCceEEccccccccccchhhHH---HhhhhhhhhhhCCC
Q 013955 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRWD---TFGELVQPLASARP 197 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~l~~i~~-----~~pd~vl~~GD~~~~~~~~~~w~---~~~~~~~~l~~~iP 197 (433)
++++..+|+|..-. ....++++++ ...-+++.+||+...... ..+. ...+.+..+. .-
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-~~~~~g~~~~~~~n~~g--~D 77 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLVG--YD 77 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-HHhcCcchHHHHHHhhC--Cc
Confidence 47888999975321 1234455543 234588899999854332 1211 1112222221 33
Q ss_pred ceeccCCCcCCCCCccccccccccc--ccccCC-C---CCC-CCCCceEEEEeCeEE--EEEEcccCC-C--CC----C-
Q 013955 198 WMVTQGNHEKESIPLIMDAFQSYNA--RWKMPF-E---ESG-SNSNLYYSFDVAGAH--LIMLGSYAD-Y--DE----Y- 260 (433)
Q Consensus 198 ~~~v~GNHD~~~~~~~~~~~~~y~~--~~~~p~-~---~~~-~~~~~~ys~~~g~v~--fi~lds~~~-~--~~----~- 260 (433)
..++||||+..... .+..... .|.+.. | ..+ ..-..|.-++.++++ |+.+-+... . .. +
T Consensus 78 -a~~~GNHEfD~G~~---~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~ 153 (285)
T cd07405 78 -AMAVGNHEFDNPLE---VLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGI 153 (285)
T ss_pred -EEeecccccccCHH---HHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCCcCCc
Confidence 44779999964321 1111111 111110 0 001 112345567788766 444433211 0 00 0
Q ss_pred --hHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 261 --SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 261 --~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
....+=+++.+++.+.++++.+|+++|......... .........+.+.+...++|++|.||.|...
T Consensus 154 ~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~--~~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 154 EFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEH--GSNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred EEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccc--cccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 112222222222222225678999999986432210 1110111233333333589999999999864
No 81
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.03 E-value=9.8e-06 Score=74.41 Aligned_cols=73 Identities=21% Similarity=0.103 Sum_probs=46.1
Q ss_pred EECCCCCCCeEEEEEecCCCCCC-hHHHHHHhhc-CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCC
Q 013955 128 FKTPPAQFPITFAVAGDLGQTGW-TKSTLDHIGQ-CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (433)
Q Consensus 128 F~T~p~~~~~~f~~~gD~~~~~~-~~~~l~~i~~-~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNH 205 (433)
|+..+.+.--|++++||+|.... ..++++.+.. .+.|-++++||+++.+....+ .++-+. ...+..+.|||
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~------vl~~l~-~~~~~~v~GNH 80 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR------CLQLLE-EHWVRAVRGNH 80 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH------HHHHHH-cCCceEeeCch
Confidence 33333333348999999986532 3456666653 368999999999987654221 122222 13467899999
Q ss_pred cC
Q 013955 206 EK 207 (433)
Q Consensus 206 D~ 207 (433)
|.
T Consensus 81 E~ 82 (218)
T PRK11439 81 EQ 82 (218)
T ss_pred HH
Confidence 96
No 82
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.02 E-value=1.4e-05 Score=73.28 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=42.3
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
-|++++||+|.... .+++++.+. ..+.|.++++||+++.+....+ .++.+.. -.++.+.||||.
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~------~l~~l~~-~~~~~v~GNHE~ 80 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLN------VLRLLNQ-PWFISVKGNHEA 80 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHH------HHHHHhh-CCcEEEECchHH
Confidence 38999999986522 234455554 4578999999999986654221 1222221 246789999997
No 83
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.99 E-value=9.8e-05 Score=76.81 Aligned_cols=183 Identities=19% Similarity=0.185 Sum_probs=97.3
Q ss_pred CCCeEEEEEecCCCCCC------------h----HHHHHHhhcC-CCceEEccccccccccchhh---HHHhhhhhhhhh
Q 013955 134 QFPITFAVAGDLGQTGW------------T----KSTLDHIGQC-KYDVHLLPGDLSYADYMQHR---WDTFGELVQPLA 193 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~------------~----~~~l~~i~~~-~pd~vl~~GD~~~~~~~~~~---w~~~~~~~~~l~ 193 (433)
...++|+...|+|..-. . ...++++++. +..++|.+||++........ .....+.+..+
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m- 102 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNAL- 102 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhc-
Confidence 56799999999976433 1 1234444433 45689999999987554222 11222223222
Q ss_pred hCCCceeccCCCcCCCCCcccccccccccccccCC---C---C--CC-CCCCceEEEEeCeEE--EEEEcccC-----CC
Q 013955 194 SARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---E--SG-SNSNLYYSFDVAGAH--LIMLGSYA-----DY 257 (433)
Q Consensus 194 ~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~---~---~--~~-~~~~~~ys~~~g~v~--fi~lds~~-----~~ 257 (433)
-.=+.++||||+..... .+..+......|. | . .. .....|.-++.++++ +|.+.+.. ..
T Consensus 103 --~yDa~tiGNHEFd~g~~---~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~ 177 (517)
T COG0737 103 --GYDAMTLGNHEFDYGLE---ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKP 177 (517)
T ss_pred --CCcEEeecccccccCHH---HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccc
Confidence 22355899999964321 1111111111120 0 0 11 112567778888754 56655411 00
Q ss_pred C-----CChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 013955 258 D-----EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (433)
Q Consensus 258 ~-----~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 328 (433)
. .-....+++++.+.+.+.++.+-+|+++|.+............. ...... .++|+++.||.|.+
T Consensus 178 ~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~-~~~~~~-----~~iD~i~~GH~H~~ 247 (517)
T COG0737 178 NAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG-DVDVAV-----PGIDLIIGGHSHTV 247 (517)
T ss_pred cccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc-cccccc-----cCcceEeccCCccc
Confidence 1 11345667777777665534677999999987654321110000 000000 34999999999964
No 84
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.81 E-value=0.00037 Score=73.04 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCeEEEEEecCCCCCCh-----------HHHHHHhhc-----CCCceEEccccccccccchhhHH---Hhhhhhhhhhh
Q 013955 134 QFPITFAVAGDLGQTGWT-----------KSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRWD---TFGELVQPLAS 194 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~-----------~~~l~~i~~-----~~pd~vl~~GD~~~~~~~~~~w~---~~~~~~~~l~~ 194 (433)
...++|+.++|+|..-.. ...++++++ ...-++|.+||++..... ..+. ...+.+..+.
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-s~~~~g~~~i~~mN~~g- 109 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLIG- 109 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-hhhcCCchhHHHHhcCC-
Confidence 457899999999864220 123444432 234578889999864432 1111 1112222221
Q ss_pred CCCceeccCCCcCCCCCcccccccccccccccCC---C----CCC-CCCCceEEEEeCeEE--EEEEcccCC--C-CC--
Q 013955 195 ARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----ESG-SNSNLYYSFDVAGAH--LIMLGSYAD--Y-DE-- 259 (433)
Q Consensus 195 ~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~---~----~~~-~~~~~~ys~~~g~v~--fi~lds~~~--~-~~-- 259 (433)
.- +.++||||+..... .+.........|. | ..+ ..-..|.-++.++++ ||.+-+... + .+
T Consensus 110 -~D-a~tlGNHEFD~G~~---~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~ 184 (551)
T PRK09558 110 -YD-AMAVGNHEFDNPLS---VLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEY 184 (551)
T ss_pred -CC-EEcccccccCcCHH---HHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCC
Confidence 33 45789999964321 1111111111111 0 001 112345557888865 455433211 0 00
Q ss_pred -----ChHHHHHHHHHhhcccc-CCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 260 -----YSDQYRWLKDDLSKVDR-KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 260 -----~~~Q~~WL~~~L~~~~~-~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
.....+-+++.+++.+. .+.+.+|+++|......... .........+.+-+...+||++|.||.|..-
T Consensus 185 ~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~--~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 185 FTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEH--GSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred cCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCcc--CCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 01112223333333321 25778999999987432211 1100011222222223379999999999753
No 85
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.68 E-value=4.4e-05 Score=67.39 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHhhcCCCceEEccccccccccch--hhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 156 DHIGQCKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 156 ~~i~~~~pd~vl~~GD~~~~~~~~--~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
+.+.+.+||.++++||+++..... ..+.... ........+|++.++||||..
T Consensus 35 ~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 35 RLIEEYGPERLIILGDLKHSFGGLSRQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHhcCCCEEEEeCcccccccccCHHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 334578999999999999754321 1122211 222233458999999999984
No 86
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.68 E-value=0.0006 Score=71.34 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=72.9
Q ss_pred HHHHhhcCCC-ceEEccccccccccchhh--HHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCC--
Q 013955 154 TLDHIGQCKY-DVHLLPGDLSYADYMQHR--WDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF-- 228 (433)
Q Consensus 154 ~l~~i~~~~p-d~vl~~GD~~~~~~~~~~--w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~-- 228 (433)
.++++++..+ -++|.+||++........ .....+.+..+ -.=+.++||||+..... .+..+......|.
T Consensus 40 ~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~---g~Da~~lGNHEFd~G~~---~l~~~~~~~~fp~l~ 113 (550)
T TIGR01530 40 EINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAA---GFDFFTLGNHEFDAGNE---GLKEFLEPLEIPVLS 113 (550)
T ss_pred HHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhcc---CCCEEEeccccccCCHH---HHHHHHHhCCCCEEE
Confidence 3445554444 478899999865432111 11111222221 23356899999964321 1111111111111
Q ss_pred -C---CCC-C---CCCceEEEEeCe--EEEEEEcccCC-C---CCC-----hHHHHHHHHHhhccccCCCCeEEEEeccc
Q 013955 229 -E---ESG-S---NSNLYYSFDVAG--AHLIMLGSYAD-Y---DEY-----SDQYRWLKDDLSKVDRKKTPWLLVLLHVP 289 (433)
Q Consensus 229 -~---~~~-~---~~~~~ys~~~g~--v~fi~lds~~~-~---~~~-----~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P 289 (433)
| ... . .-..|.-++.++ +-||.+.+... . ... ....+=+++..++.++.+.+.+|+++|..
T Consensus 114 aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g 193 (550)
T TIGR01530 114 ANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAG 193 (550)
T ss_pred EeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 000 0 113455577887 55677754211 0 010 11122222222222222567799999985
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHH-cCCcEEEecCcccce
Q 013955 290 WYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYE 329 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 329 (433)
... + ..+.++ .+||++|.||+|..-
T Consensus 194 ~~~---------d------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 194 FEK---------N------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred cHH---------H------HHHHhcCCCCCEEEeCCCCccc
Confidence 311 0 122333 279999999999864
No 87
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.66 E-value=0.0006 Score=66.07 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCcEEEecCcccce
Q 013955 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (433)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~ 329 (433)
+.+-+|+++|..-+.. + ..|.++. ++|++|.||+|..-
T Consensus 207 gvD~II~LsH~g~~~~--------d------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 207 GINKIILLSHLQQISI--------E------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCEEEEEecccccch--------H------HHHHhcCCCCCEEEeCCCCccC
Confidence 5667999999841110 1 1234443 79999999999863
No 88
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.00061 Score=67.70 Aligned_cols=76 Identities=12% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCeEEEEEecCCCCCC------hHHHHHHhh-----cCCCceEEccccccccccc-------------hhhHHHhhhhh
Q 013955 134 QFPITFAVAGDLGQTGW------TKSTLDHIG-----QCKYDVHLLPGDLSYADYM-------------QHRWDTFGELV 189 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~------~~~~l~~i~-----~~~pd~vl~~GD~~~~~~~-------------~~~w~~~~~~~ 189 (433)
..++++++++|.|.+.. ....++.+. ..+...++++||.++.-+. .++++.+.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 56789999999988643 123444443 3456899999999985432 23556666666
Q ss_pred hhhhhCCCceeccCCCcCCC
Q 013955 190 QPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 190 ~~l~~~iP~~~v~GNHD~~~ 209 (433)
..+...+-++..|||||...
T Consensus 303 ~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred hhCCCCceEEEecCCCCccc
Confidence 66666788999999999953
No 89
>PHA02239 putative protein phosphatase
Probab=97.50 E-value=0.00014 Score=67.46 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=43.8
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhcC--CCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~~--~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
++++++||+|.... ..++++.+... ..|.++++||+++.+.... +.+..+++.+....+++.++||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~--~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChH--HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 47899999985321 23455555432 3599999999998765321 22222222222235789999999973
No 90
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.50 E-value=0.00016 Score=66.60 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=46.9
Q ss_pred eEEEEEecCCCCCCh--------------HHHHHHh----hcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCc
Q 013955 137 ITFAVAGDLGQTGWT--------------KSTLDHI----GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPW 198 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~--------------~~~l~~i----~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~ 198 (433)
-+.++++|+|.+... .+.++++ .+.+||.+|++||+.+.......|..+.+.++.+. .++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~--~~v 92 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF--RDL 92 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC--CcE
Confidence 457899999876421 1344444 46789999999999975443234555444454432 699
Q ss_pred eeccCCCcC
Q 013955 199 MVTQGNHEK 207 (433)
Q Consensus 199 ~~v~GNHD~ 207 (433)
+.++||||.
T Consensus 93 ~~V~GNHD~ 101 (225)
T TIGR00024 93 ILIRGNHDA 101 (225)
T ss_pred EEECCCCCC
Confidence 999999997
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.43 E-value=0.0018 Score=73.80 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCcEEEecCcccce
Q 013955 268 KDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (433)
Q Consensus 268 ~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~ 329 (433)
++.+++.++.+++.+|+++|...-...... +. .....+|.++. +||++|.||.|...
T Consensus 224 ~~~v~~lk~~gaDvII~l~H~G~~~~~~~~-~~----en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 224 NKTIPEMKKGGADVIVALAHSGIESEYQSS-GA----EDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred HHHHHHHHhcCCCEEEEEeccCcCCCCCCC-Cc----chHHHHHHHhCCCCcEEEeCCCcccc
Confidence 333333333367789999999864332111 11 12233444443 79999999999864
No 92
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.42 E-value=0.0049 Score=55.98 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=106.6
Q ss_pred eEEEEEecCCCCCChHH----HHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCC
Q 013955 137 ITFAVAGDLGQTGWTKS----TLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIP 211 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~~~----~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~ 211 (433)
+|++++||+ .+...+. .|..++ +.++||+|..|-++-.+.- -.|+.+.++++ ..+-+ .+.|||=+....
T Consensus 1 mriLfiGDv-vGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~G-it~k~y~~l~~---~G~dv-iT~GNH~wd~~e 74 (266)
T COG1692 1 MRILFIGDV-VGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFG-ITEKIYKELLE---AGADV-ITLGNHTWDQKE 74 (266)
T ss_pred CeEEEEecc-cCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcC-CCHHHHHHHHH---hCCCE-EecccccccchH
Confidence 589999999 3323333 334444 6689999999999754422 23444443332 23444 489999885321
Q ss_pred cccccccccccccccCCCCC-CCCCCceEEEEeCeEEEEEEccc--CCCCC-ChHHHHHHHHHhhccccCCCCeEEEEec
Q 013955 212 LIMDAFQSYNARWKMPFEES-GSNSNLYYSFDVAGAHLIMLGSY--ADYDE-YSDQYRWLKDDLSKVDRKKTPWLLVLLH 287 (433)
Q Consensus 212 ~~~~~~~~y~~~~~~p~~~~-~~~~~~~ys~~~g~v~fi~lds~--~~~~~-~~~Q~~WL~~~L~~~~~~~~~~~iv~~H 287 (433)
. -.+..-..++-.|.|-. +..+..|.-|...+..+.++|-. ..... -..-..-+++.|.+.+. +++.+||-+|
T Consensus 75 i--~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~-~~~~iiVDFH 151 (266)
T COG1692 75 I--LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL-GTDLIIVDFH 151 (266)
T ss_pred H--HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCcc-CCceEEEEcc
Confidence 1 01111112233344321 23456677788777665555532 11111 12334456667776654 4567899888
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEE-ECCCCC
Q 013955 288 VPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYIT-IGDGGN 354 (433)
Q Consensus 288 ~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~-~G~gG~ 354 (433)
.-..+.. .-.-++-+..|.+|+-=|+|....-..+. ++|+.|++ .|.-|.
T Consensus 152 AEtTSEK------------~a~g~yldGrvsavvGTHTHV~TaD~rIL-----~~GTayiTDvGMtG~ 202 (266)
T COG1692 152 AETTSEK------------NAFGWYLDGRVSAVVGTHTHVPTADERIL-----PKGTAYITDVGMTGP 202 (266)
T ss_pred ccchhhh------------hhhheEEcCeEEEEEeccCccccccceec-----CCCcEEEecCccccc
Confidence 7532211 11122334478899999999865444433 67999987 344343
No 93
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.39 E-value=0.0038 Score=67.36 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHc-CCcEEEecCcccceeeeeccCCccCCCccEEEEECCCCCCC
Q 013955 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKE 356 (433)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~gG~~~ 356 (433)
+++.+|+++|...-.... .... +...-.+.+. +||++|.||+|..-... -+|+..+.+|.-|...
T Consensus 244 GaDvIIaLsH~G~~~d~~---~~~~---ena~~~l~~v~gID~IlgGHsH~~~~~~--------ingv~vvqaG~~G~~L 309 (780)
T PRK09418 244 GADVIVALAHSGVDKSGY---NVGM---ENASYYLTEVPGVDAVLMGHSHTEVKDV--------FNGVPVVMPGVFGSNL 309 (780)
T ss_pred CCCEEEEEeccCcccccc---cccc---hhhhHHHhcCCCCCEEEECCCCCccccc--------CCCEEEEEcChhhcEE
Confidence 577899999987643211 1110 1111113443 79999999999864321 1355555566555554
Q ss_pred c
Q 013955 357 G 357 (433)
Q Consensus 357 ~ 357 (433)
|
T Consensus 310 G 310 (780)
T PRK09418 310 G 310 (780)
T ss_pred E
Confidence 3
No 94
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.38 E-value=0.0032 Score=58.83 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEEEecCCCCCCh------HHHHHHhh-----------cCCCceEEccccccccccc-------------------hhhH
Q 013955 139 FAVAGDLGQTGWT------KSTLDHIG-----------QCKYDVHLLPGDLSYADYM-------------------QHRW 182 (433)
Q Consensus 139 f~~~gD~~~~~~~------~~~l~~i~-----------~~~pd~vl~~GD~~~~~~~-------------------~~~w 182 (433)
+++++|.+.+... +..++.+. ..+..-+|++||.+...+. ....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 5778888765442 12233332 1244579999999875432 1224
Q ss_pred HHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCC-CCCCCCCceEEEEeCeEEEEEEcccC-----C
Q 013955 183 DTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE-ESGSNSNLYYSFDVAGAHLIMLGSYA-----D 256 (433)
Q Consensus 183 ~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~-~~~~~~~~~ys~~~g~v~fi~lds~~-----~ 256 (433)
+.+.+++..+...+|+..+|||||-.....-+..+.. ..|..... ..-..-...|.|+++|++|++..... .
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~--~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~k 159 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHR--CLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILK 159 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCH--HHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHH
Confidence 4555667777788999999999998543221122211 11110000 00011133467999999999987642 1
Q ss_pred CCCChHHHHHHHHHhhc
Q 013955 257 YDEYSDQYRWLKDDLSK 273 (433)
Q Consensus 257 ~~~~~~Q~~WL~~~L~~ 273 (433)
+...+.-++.|+..|+.
T Consensus 160 y~~~~~~l~~me~~L~w 176 (257)
T cd07387 160 YSSLESRLDILERTLKW 176 (257)
T ss_pred hCCCCCHHHHHHHHHHh
Confidence 22334446777777764
No 95
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.34 E-value=0.0064 Score=65.80 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 013955 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (433)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 328 (433)
+.+++...+.+.++++.+|++.|............++ .. ..|-+--+||++|.||.|..
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En--~~---~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEEN--VG---YQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccc--hh---hHHhcCCCCCEEEECCCCCc
Confidence 3444444444333677899999987643211111111 11 12222248999999999984
No 96
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=97.30 E-value=0.0029 Score=58.19 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=89.7
Q ss_pred EEEecCCCCCChH----HHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCccc
Q 013955 140 AVAGDLGQTGWTK----STLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (433)
Q Consensus 140 ~~~gD~~~~~~~~----~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~ 214 (433)
+++||+ .+.... ..|..++ +.++||||..|.++-.+.- -..+.+.+++ ...+-++ +.|||=+......
T Consensus 1 LfiGDI-vG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~G-it~~~~~~L~---~~GvDvi-T~GNH~wdkkei~- 73 (253)
T PF13277_consen 1 LFIGDI-VGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFG-ITPKIAEELF---KAGVDVI-TMGNHIWDKKEIF- 73 (253)
T ss_dssp EEE-EB-BCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS---HHHHHHHH---HHT-SEE-E--TTTTSSTTHH-
T ss_pred CeEEec-CCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCC-CCHHHHHHHH---hcCCCEE-ecCcccccCcHHH-
Confidence 467887 232223 3344444 6799999999999854322 1111111111 1235554 8999988543210
Q ss_pred ccccccccccccCCCCC-CCCCCceEEEEeCeEEEEEEccc--CCCCCChHHHHHHHHHhhccccCCCCeEEEEeccccc
Q 013955 215 DAFQSYNARWKMPFEES-GSNSNLYYSFDVAGAHLIMLGSY--ADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY 291 (433)
Q Consensus 215 ~~~~~y~~~~~~p~~~~-~~~~~~~ys~~~g~v~fi~lds~--~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 291 (433)
.+-.-..+.-.|.|-+ +..+..|..++.++.++.++|-. ........-...+++.|++... +.+.+||=+|.=..
T Consensus 74 -~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~~-~~~~iiVDFHAEaT 151 (253)
T PF13277_consen 74 -DFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELKE-ETDIIIVDFHAEAT 151 (253)
T ss_dssp -HHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S-H
T ss_pred -HHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhccc-cCCEEEEEeecCcH
Confidence 1111112223344422 34567888899998777777652 2222222334445555555322 56778888887321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEE-ECCCCCC
Q 013955 292 NSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYIT-IGDGGNK 355 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~-~G~gG~~ 355 (433)
+ . +.-.-.+-+.+|.+|+--|+|....-..+. |+|+.||+ .|.-|..
T Consensus 152 S-----------E-K~A~g~~lDGrvsaV~GTHTHVqTaDerIL-----p~GTaYiTDvGMtG~~ 199 (253)
T PF13277_consen 152 S-----------E-KQAMGWYLDGRVSAVVGTHTHVQTADERIL-----PGGTAYITDVGMTGPY 199 (253)
T ss_dssp H-----------H-HHHHHHHHBTTBSEEEEESSSS-BS--EE------TTS-EEES---EBEES
T ss_pred H-----------H-HHHHHHHhCCcEEEEEeCCCCccCchhhcc-----CCCCEEEecCccccCc
Confidence 1 1 333445666789999999999864433333 68999987 3544544
No 97
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.30 E-value=0.001 Score=63.20 Aligned_cols=173 Identities=21% Similarity=0.226 Sum_probs=93.1
Q ss_pred eEEEEEecCCCCCCh-HHHHHHhh---cCCCceEEccccccccccc--------hhhHH---Hhhhhhh-hhhhCCCcee
Q 013955 137 ITFAVAGDLGQTGWT-KSTLDHIG---QCKYDVHLLPGDLSYADYM--------QHRWD---TFGELVQ-PLASARPWMV 200 (433)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~l~~i~---~~~pd~vl~~GD~~~~~~~--------~~~w~---~~~~~~~-~l~~~iP~~~ 200 (433)
+|+++-|++|..-.. -+.+..+. ..+.|++|++||+---... ...+. .|.+... +..+.+|-++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 588999999754221 22334443 4599999999999421111 12222 2333221 2234478888
Q ss_pred ccCCCcCCCCCcccccccccccccccCCCCCCCCCCceE-----EEEeCeEEEEEEccc---CCCC-------CC--h--
Q 013955 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYY-----SFDVAGAHLIMLGSY---ADYD-------EY--S-- 261 (433)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~~~~~~~~y-----s~~~g~v~fi~lds~---~~~~-------~~--~-- 261 (433)
+=||||..+ |. +.+|..+- ...+.|| .+.+||+|+-.|+.- .+|. +. +
T Consensus 81 IGGNHEAsn----------yL--~eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~sti 147 (456)
T KOG2863|consen 81 IGGNHEASN----------YL--QELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTI 147 (456)
T ss_pred ecCchHHHH----------HH--HhcccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhh
Confidence 999999842 11 12232100 0113444 367899999998862 1211 00 0
Q ss_pred ----HHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCCh-----------------hHHHHHHHHHHHcCCcEE
Q 013955 262 ----DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGD-----------------GMMAIMEPLLYAASVDLV 320 (433)
Q Consensus 262 ----~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~-----------------~~~~~l~~l~~~~~Vdlv 320 (433)
.-++.=...|++. +.|--|.++|.=+... .++++.. .....+++||++-++..+
T Consensus 148 RsiYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI--~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yW 222 (456)
T KOG2863|consen 148 RSIYHVRISDVAKLKQL---KHPIDIFLSHDWPRGI--YYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYW 222 (456)
T ss_pred hhhhhhhhhhhHHHHhh---cCcceEEeecCCCcch--hhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchh
Confidence 0011111223333 3344588888643222 1222211 123678899999999999
Q ss_pred EecCccc
Q 013955 321 LAGHVHA 327 (433)
Q Consensus 321 lsGH~H~ 327 (433)
|+.|.|.
T Consensus 223 fsAHLH~ 229 (456)
T KOG2863|consen 223 FSAHLHV 229 (456)
T ss_pred hhhhHhh
Confidence 9999997
No 98
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.28 E-value=0.0003 Score=66.61 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=44.0
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
++++++||+|.... .+++++++. ..+.|.++++||+++.+.... ...+.+..+ ..+++.++||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~---~vl~~l~~l--~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL---EVLRFVKSL--GDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH---HHHHHHHhc--CCCeEEEecChhH
Confidence 36899999985532 344556554 357899999999998765321 222233322 2468899999998
No 99
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.20 E-value=0.0072 Score=50.97 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCh--------------HHHHHHhh-cC-CCceEEccccccccccchhhHHHhhhhhhhhhhCCCceec
Q 013955 138 TFAVAGDLGQTGWT--------------KSTLDHIG-QC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVT 201 (433)
Q Consensus 138 ~f~~~gD~~~~~~~--------------~~~l~~i~-~~-~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v 201 (433)
.+.++||+|.+... ..++.... -. .=|.+.++||++...... .....+++.|...+ ..+
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~---~~a~~IlerLnGrk--hlv 79 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRE---RAAGLILERLNGRK--HLV 79 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchh---hHHHHHHHHcCCcE--EEe
Confidence 35678899765321 12333333 23 346888999998654432 22334455554333 779
Q ss_pred cCCCcCC
Q 013955 202 QGNHEKE 208 (433)
Q Consensus 202 ~GNHD~~ 208 (433)
+||||-.
T Consensus 80 ~GNhDk~ 86 (186)
T COG4186 80 PGNHDKC 86 (186)
T ss_pred eCCCCCC
Confidence 9999974
No 100
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.17 E-value=0.00044 Score=64.19 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCC-hHHHHHHhhc----------CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCc
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIGQ----------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHE 206 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~~----------~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD 206 (433)
+++++||+|.... .+++++.+.- .+.|.++++||+++.+... ....+.+..+...-.++.+.||||
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s---~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDS---PEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCH---HHHHHHHHHHhhCCcEEEEECCcH
Confidence 6899999986532 3455666521 1368999999999866431 222333443333345788999999
Q ss_pred C
Q 013955 207 K 207 (433)
Q Consensus 207 ~ 207 (433)
.
T Consensus 79 ~ 79 (234)
T cd07423 79 N 79 (234)
T ss_pred H
Confidence 7
No 101
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.12 E-value=0.00062 Score=59.76 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 161 CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 161 ~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
.++|.|+++||++........ .+.++.+ ..|++.++||||..
T Consensus 41 ~~~d~vi~~GDl~~~~~~~~~----~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 41 GPDDTVYHLGDFSFGGKAGTE----LELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCCEEEEeCCCCCCCChHHH----HHHHHhC--CCCeEEEeCCCCch
Confidence 378999999999976543211 2222222 26899999999974
No 102
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.94 E-value=0.0011 Score=62.55 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=41.9
Q ss_pred EEEEEecCCCCCC-hHHHHHHhhc------CCCceEEccccccccccchhhHHHhhhhhhhhhhC---CCceeccCCCcC
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIGQ------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA---RPWMVTQGNHEK 207 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~~------~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~---iP~~~v~GNHD~ 207 (433)
++.++||+|.... .+.+++.+.. ...+.+|++||+++.+..... ..+.+..+... ..++.+.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e---Vld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK---VIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH---HHHHHHHhhhcccccceEEEecCChH
Confidence 6899999986532 3445555532 235789999999987754222 22223323222 247889999995
No 103
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.93 E-value=0.00098 Score=62.30 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=42.7
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhc---------CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCc
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQ---------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHE 206 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~---------~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD 206 (433)
+|+.++||+|.... ..++++++.- ..-|.++++||+++.+.... + ..+.+..+...-.++.+.||||
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~--~-vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL--R-MIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH--H-HHHHHHHHhhCCCEEEEeCccH
Confidence 36899999985422 2344555431 23478999999999765422 1 2222333333357899999999
Q ss_pred C
Q 013955 207 K 207 (433)
Q Consensus 207 ~ 207 (433)
.
T Consensus 78 ~ 78 (245)
T PRK13625 78 N 78 (245)
T ss_pred H
Confidence 6
No 104
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.90 E-value=0.0011 Score=60.99 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=42.3
Q ss_pred EEEEecCCCCCC-hHHHHHHhhc--------CCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 139 FAVAGDLGQTGW-TKSTLDHIGQ--------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 139 f~~~gD~~~~~~-~~~~l~~i~~--------~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
+.++||+|.... .+++++++.. ...|.+|++||+++.+.... ...+.+..+...-.++.+.||||..
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~---~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIR---ELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHH---HHHHHHHHhhcCCCEEEEEccCcHH
Confidence 468999986532 3455566532 14689999999998765422 2223333333233688899999973
No 105
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.88 E-value=0.001 Score=61.34 Aligned_cols=167 Identities=21% Similarity=0.272 Sum_probs=96.7
Q ss_pred CCceEEccccccccccch-------hhHHHhh----hhhhhhhhCCCceeccCCCcCCCC--Cc----ccccccccc---
Q 013955 162 KYDVHLLPGDLSYADYMQ-------HRWDTFG----ELVQPLASARPWMVTQGNHEKESI--PL----IMDAFQSYN--- 221 (433)
Q Consensus 162 ~pd~vl~~GD~~~~~~~~-------~~w~~~~----~~~~~l~~~iP~~~v~GNHD~~~~--~~----~~~~~~~y~--- 221 (433)
-|--+|..||++++++.+ .++..|. .-..+....+|+|.-+||||..-. +- .....+.|.
T Consensus 126 ~plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~ 205 (392)
T COG5555 126 CPLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENY 205 (392)
T ss_pred CceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhh
Confidence 344577788998776541 1121111 111222334999999999999532 10 001111111
Q ss_pred ----cccccCCC-CCCCCCCceEEEEeCeEEEEEEcccCCC-CC-ChHHHHHHHHHhhccccCCCCeEEEEecccccCCC
Q 013955 222 ----ARWKMPFE-ESGSNSNLYYSFDVAGAHLIMLGSYADY-DE-YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSN 294 (433)
Q Consensus 222 ----~~~~~p~~-~~~~~~~~~ys~~~g~v~fi~lds~~~~-~~-~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 294 (433)
..|.-|.. ..-......||+++|+++.+-+-....- .. ....+-||+.+|.....+..+ ++++.|.-+-..+
T Consensus 206 Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfs 284 (392)
T COG5555 206 HRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFS 284 (392)
T ss_pred cCcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCcccee
Confidence 11222221 1112335679999999988877653211 11 134578999999987665555 8999998652211
Q ss_pred CC-C---------CC------CChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 295 EA-H---------QG------EGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 295 ~~-~---------~~------~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
.. + .+ .....+..|...++.|+|...+.||.|...
T Consensus 285 teawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 285 TEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred ccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 10 0 01 112467889999999999999999999863
No 106
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.88 E-value=0.0045 Score=46.91 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=46.3
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCC----CCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEE
Q 013955 42 HPQQVHISLAGDSHMRVTWITDDES----SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (433)
Q Consensus 42 ~p~qv~l~~~~~~~~~i~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y 117 (433)
+|..+++...+.+++.|.|...... ..-.|+|......... .... .......+.|++|+|++.|.+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~------~~~~----~~~~~~~~~i~~L~p~t~Y~~ 71 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDW------QEVT----VPGNETSYTITGLQPGTTYEF 71 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEE------EEEE----EETTSSEEEEESCCTTSEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceee------eeee----eeeeeeeeeeccCCCCCEEEE
Confidence 5888999988899999999998421 2335666555432200 0111 112233678899999999999
Q ss_pred Eecc
Q 013955 118 RCGR 121 (433)
Q Consensus 118 ~v~~ 121 (433)
+|..
T Consensus 72 ~v~a 75 (85)
T PF00041_consen 72 RVRA 75 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9964
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.87 E-value=0.01 Score=55.22 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
+-+++.+++.++ +.+.+||+.|-..-... ........+...+.+.++|+|+.||.|..+-..
T Consensus 162 ~~~~~~i~~lr~-~~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 162 ERIAADIAEAKK-KADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHHhh-cCCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 445556665544 37789999997542211 111234556656666799999999999876443
No 108
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.86 E-value=0.013 Score=62.17 Aligned_cols=45 Identities=24% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHH-cCCcEEEecCcccc
Q 013955 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAY 328 (433)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y 328 (433)
+++.+|++.|.......... . . +.....+.+ -+||++|.||+|..
T Consensus 195 gaDvII~LsH~G~~~d~~~~-~-~----en~~~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 195 GADIIVALAHSGISADPYQP-G-A----ENSAYYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred CCCEEEEEeccCcCCCcccc-c-c----chHHHHHhcCCCCCEEEcCCCCcc
Confidence 56789999999764321100 1 1 111112344 38999999999985
No 109
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.82 E-value=0.02 Score=60.99 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=31.1
Q ss_pred HHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHH-cCCcEEEecCcccc
Q 013955 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAY 328 (433)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y 328 (433)
+++...+.+.++++.+|++.|............++ .... +.+ -+||++|.||.|..
T Consensus 207 a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~aen-----~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 207 ARKYVPEMKEKGADIVVAIPHSGISADPYKAMAEN-----SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCCccccccc-----hhHH-HhcCCCCCEEEeCCCCcc
Confidence 44443333333577899999997633211000011 1111 333 37999999999985
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.74 E-value=0.015 Score=54.04 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=38.4
Q ss_pred HHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 266 WLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 266 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
-+++.+++.+. +.+.+||+.|-..-.... .. .....+..-+.+.++|+|+.||.|..+...
T Consensus 161 ~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~----p~-~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 161 KILADIARARK-KADVVIVSLHWGVEYQYE----PT-DEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHHhc-cCCEEEEEecCccccCCC----CC-HHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 34455555544 578899999986532111 11 233445555555799999999999886544
No 111
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.71 E-value=0.0015 Score=60.03 Aligned_cols=66 Identities=23% Similarity=0.174 Sum_probs=41.8
Q ss_pred EEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhh-CCCceeccCCCcCC
Q 013955 140 AVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (433)
Q Consensus 140 ~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~-~iP~~~v~GNHD~~ 208 (433)
.++||+|.... ..++++.+....+|.+|++||+++.+.... ...+.+..+.. ..+++.+.||||..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~---~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSV---EVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcH---HHHHHHHHhcCCCCcEEEEccCchhh
Confidence 37899985422 234455555668999999999998764321 22222222211 34789999999984
No 112
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.60 E-value=0.0027 Score=59.58 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=42.6
Q ss_pred EEEecCCCCCC-hHHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 140 AVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 140 ~~~gD~~~~~~-~~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
.++||+|.... .+++++++. ..+.|.++++||+++.+.... +..+.+..+. ..+..++||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~---evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSL---ETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHH---HHHHHHHhcC--CCeEEEcCCchHH
Confidence 58999986532 345666665 346899999999998765421 2223333332 3678899999983
No 113
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.47 E-value=0.079 Score=49.63 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 263 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
+.+.+.+++++.++ +.+++||+.|--.-... ......+.+...+-+.++|+|+.+|.|..+-..
T Consensus 169 ~~~~i~~~i~~~r~-~~D~vIv~~HwG~e~~~-----~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREARK-KADVVIVSLHWGIEYEN-----YPTPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHhc-CCCEEEEEeccCCCCCC-----CCCHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 45788888888763 67899999998532111 112344556666666899999999999977554
No 114
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.26 E-value=0.0043 Score=58.46 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=43.0
Q ss_pred EEEEEecCCCCC-ChHHHHHHhh-cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 138 TFAVAGDLGQTG-WTKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
+..++||+|... ..+++++++. +...|-++++||+++.+....+ ..+.+..+. -.+..+.||||.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle---vL~~l~~l~--~~~~~VlGNHD~ 68 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE---VLRYVKSLG--DAVRLVLGNHDL 68 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH---HHHHHHhcC--CCeEEEEChhHH
Confidence 467999997543 3456777776 4568999999999987654211 222333322 235679999997
No 115
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.02 Score=58.45 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=77.7
Q ss_pred cCCCce-EEccccccccccchhhHHHhhhhhhhhhhCCC-ceeccCCCcCCCCCcccccccccccccccCCC--------
Q 013955 160 QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLASARP-WMVTQGNHEKESIPLIMDAFQSYNARWKMPFE-------- 229 (433)
Q Consensus 160 ~~~pd~-vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP-~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~-------- 229 (433)
...+|. ++-+||.-+..+.....+.-......+....| =..++||||.+...-....+..+...|.-|.-
T Consensus 84 ~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~yD~l~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~ 163 (602)
T KOG4419|consen 84 RKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMPYDILTLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFD 163 (602)
T ss_pred ccCCCEEEEecccccCCceeeeccCCchHHHHHHHhcCccchhhhcchhhhhhhhhccchhhhhhhhccceeecceEEec
Confidence 556665 56699998766542211111111122333344 35589999996431110111112233322221
Q ss_pred ---CCCCCCCceEEEE-eCeEEEEEEcccC------CCC------CChHHHHHHHHHhhccccCCCCeEEEEecccccCC
Q 013955 230 ---ESGSNSNLYYSFD-VAGAHLIMLGSYA------DYD------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNS 293 (433)
Q Consensus 230 ---~~~~~~~~~ys~~-~g~v~fi~lds~~------~~~------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~ 293 (433)
.-.+....++.|. ..++++..+-.-. ... ..-.|.+|-.+.++.- +.+-+|+++|.|.-..
T Consensus 164 ~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~~~---~idlii~lgH~~~~~~ 240 (602)
T KOG4419|consen 164 SSNSFVPFGLEYATFLTPHGVVVLAVGFLCASFSGAANRTVVVPVEEITQSEWEQDMVNTT---DIDLIIALGHSPVRDD 240 (602)
T ss_pred CchhhccccccceEEeccCceEEEEEEEeeccccccCCCcccccHHHHhccchHHHHhhcc---CccEEEEecccccccc
Confidence 0112234555554 3344333332211 111 1245678888877764 5667899999985332
Q ss_pred CCCCCCCChhHHH-HHHHHHHHc-CCcE-EEecCcccc
Q 013955 294 NEAHQGEGDGMMA-IMEPLLYAA-SVDL-VLAGHVHAY 328 (433)
Q Consensus 294 ~~~~~~~~~~~~~-~l~~l~~~~-~Vdl-vlsGH~H~y 328 (433)
. .++ .+..+...+ ++++ ||-||.|..
T Consensus 241 ~---------e~~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 241 D---------EWKSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred h---------hhhhHHHHHhhhCCCCceEEECchhhhh
Confidence 1 222 344444444 5777 999999974
No 116
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.18 E-value=0.0086 Score=54.69 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=47.3
Q ss_pred CeEEEEEecCCCCCCh--------------HH---HHH-HhhcCCCceEEccccccccccc--hhhHHHhhhhhhhhhhC
Q 013955 136 PITFAVAGDLGQTGWT--------------KS---TLD-HIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASA 195 (433)
Q Consensus 136 ~~~f~~~gD~~~~~~~--------------~~---~l~-~i~~~~pd~vl~~GD~~~~~~~--~~~w~~~~~~~~~l~~~ 195 (433)
.-+.++++|+|.+... .. .++ -+...+|+-+|++||+-.+-+. ..+|.....+++.+..
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~- 97 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDE- 97 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhcc-
Confidence 3467899999876421 11 222 2358899999999999876543 3345444444444433
Q ss_pred CCceeccCCCcCC
Q 013955 196 RPWMVTQGNHEKE 208 (433)
Q Consensus 196 iP~~~v~GNHD~~ 208 (433)
.-|+.+.||||-.
T Consensus 98 ~evi~i~GNHD~~ 110 (235)
T COG1407 98 REVIIIRGNHDNG 110 (235)
T ss_pred CcEEEEeccCCCc
Confidence 2599999999984
No 117
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=96.03 E-value=0.013 Score=58.89 Aligned_cols=45 Identities=24% Similarity=0.118 Sum_probs=34.4
Q ss_pred CCCeEEEEEecCCCCCC-------------hHHHHHHhhcCCCceEEccccccccccc
Q 013955 134 QFPITFAVAGDLGQTGW-------------TKSTLDHIGQCKYDVHLLPGDLSYADYM 178 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-------------~~~~l~~i~~~~pd~vl~~GD~~~~~~~ 178 (433)
...+||++..|.|.+.. +..++.-+.+.+.|+||..||++..+.+
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 56799999999987642 1234444458899999999999987665
No 118
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.36 Score=40.51 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCcEEEecCcccceeeeeccCCccCCCccEEEEECCC-CCCCcccccCCCCCCCcceeEeccccEEEEEE
Q 013955 306 AIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDG-GNKEGLARKYKNPQPDWSVFREASFGHGELKI 384 (433)
Q Consensus 306 ~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~g~~yi~~G~g-G~~~~~~~~~~~~~p~~~~~~~~~~G~~~l~v 384 (433)
+.|.-|-++..||+.++||+|.++... -+|-.||.-|++ |+.. ..+..+ ....|..+++
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSaTGAfn-----~~~t~~-------~~PSFvLmDi 156 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSATGAFN-----VSDTDI-------IVPSFVLMDI 156 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcccCCCc-----ccccCC-------CCCceEEEEe
Confidence 466666778899999999999998776 358888988876 3321 111111 3567899998
Q ss_pred EcCceEEEEEEEeCCCCCeeeeEEEEE
Q 013955 385 VNSTHAFWSWHRNDDDEPVRSDQLWIT 411 (433)
Q Consensus 385 ~~~~~l~~~~~~~~~g~~~v~d~f~i~ 411 (433)
...+-+++- ++.-||+. -+|.....
T Consensus 157 qg~~~v~Yv-Y~lidgeV-kVdki~yk 181 (183)
T KOG3325|consen 157 QGSTVVTYV-YRLIDGEV-KVDKIEYK 181 (183)
T ss_pred cCCEEEEEE-eeeeCCcE-EEEEEEec
Confidence 655433333 34456762 25554443
No 119
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.10 E-value=0.025 Score=54.53 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCC-hHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCC--CceeccCCCcCC
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASAR--PWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~i--P~~~v~GNHD~~ 208 (433)
+++++||+|.... ..++++.......+-++++||+++.+...- +.+ ..+..+.-.. -++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~--Evi-~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSI--ECV-LYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCChH--HHH-HHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5889999985422 233444444445688999999998765321 221 1222222223 478899999974
No 120
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=94.86 E-value=0.031 Score=52.96 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=42.7
Q ss_pred eEEEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhh--CCCceeccCCCcCC
Q 013955 137 ITFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (433)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~--~iP~~~v~GNHD~~ 208 (433)
-+++++||+|... ...++++.+.....+-++++||+++.+.... +. ...+..+.- .--++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~--e~-l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSI--EV-ILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChH--HH-HHHHHHHHhcCCCCEEEEeccccHH
Confidence 3589999998542 2234455555566788999999998765421 11 112222211 13478899999984
No 121
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.40 E-value=0.17 Score=53.65 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=50.1
Q ss_pred EEEEecCCCcEEEEEEcCCCCCCcEEE----EeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEEEecc
Q 013955 46 VHISLAGDSHMRVTWITDDESSPSVVE----YGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 46 v~l~~~~~~~~~i~W~t~~~~~~~~v~----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y~v~~ 121 (433)
+++.-.+.++++++|.-++.+....+. |-++..+ + .+|... ......|+|+||+|||.|-+||..
T Consensus 449 ~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~-------e-~~~~~~---~t~~~~~ti~gL~p~t~YvfqVRa 517 (996)
T KOG0196|consen 449 LRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDED-------E-RSYSTL---KTKTTTATITGLKPGTVYVFQVRA 517 (996)
T ss_pred EEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccc-------c-cceeEE---ecccceEEeeccCCCcEEEEEEEE
Confidence 555555689999999998766544444 4444211 1 112111 123456889999999999999964
Q ss_pred --------cCCeeEEECCCC
Q 013955 122 --------QGPEFEFKTPPA 133 (433)
Q Consensus 122 --------~s~~~~F~T~p~ 133 (433)
-|....|.|.+.
T Consensus 518 rT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 518 RTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ecccCCCCCCCceeeeecCc
Confidence 256778888764
No 122
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.40 E-value=0.045 Score=52.21 Aligned_cols=68 Identities=22% Similarity=0.165 Sum_probs=40.8
Q ss_pred EEEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhh--CCCceeccCCCcCC
Q 013955 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~--~iP~~~v~GNHD~~ 208 (433)
.+.++||+|... ....+++.......+-+|++||+++.+.... +. ...+..+.- .-.++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~--ev-l~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSV--ET-FLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHH--HH-HHHHHHHhhcCCCcEEEEecccchH
Confidence 478999998542 2233444444445678999999998765421 11 112222221 23588999999974
No 123
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.14 E-value=0.047 Score=52.31 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=41.0
Q ss_pred EEEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCC--CceeccCCCcCC
Q 013955 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASAR--PWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~i--P~~~v~GNHD~~ 208 (433)
.++++||+|... ...++++.......+-+|++||+++.+.... +.+ ..+..+.-.. -++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--e~i-~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL--ETI-CLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcH--HHH-HHHHHhhhhCCCcEEEEecccchh
Confidence 488999998542 2233455444455678999999998765421 211 1111221112 378899999985
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=93.93 E-value=0.065 Score=51.52 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=40.0
Q ss_pred EEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCC--CceeccCCCcCC
Q 013955 139 FAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASAR--PWMVTQGNHEKE 208 (433)
Q Consensus 139 f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~i--P~~~v~GNHD~~ 208 (433)
+.++||+|... ...++++.+.....+-++++||+++.+.... +.+ ..+..+.-.. -++.+.||||..
T Consensus 45 i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--evl-~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 45 VNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSV--ETM-EYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHH--HHH-HHHHHhhhcCCCcEEEEecccchH
Confidence 78999998542 2233444444445677999999998765421 111 1111221122 378899999974
No 125
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.63 E-value=0.13 Score=49.86 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCC-hHHHHHHhhcC-CCceEEccccccccccchhhHHHhhhhhhhhhhC--CCceeccCCCcCCC
Q 013955 138 TFAVAGDLGQTGW-TKSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKES 209 (433)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~l~~i~~~-~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~--iP~~~v~GNHD~~~ 209 (433)
++.++||+|.... ...+++..... .-+.+|++||+++.+... .+.+ .++-.+... --++.+.||||...
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s--~Evl-~ll~~lk~~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRS--IEIL-IILFAFFLVYPNEVHLNRGNHEDHI 124 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCc--HHHH-HHHHHHhhcCCCcEEEecCchhhhh
Confidence 6799999985522 12233332222 236799999999977542 2222 112122111 23788999999853
No 126
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.58 E-value=0.088 Score=51.96 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=39.5
Q ss_pred eEEEEEecCCCCCC-hHHHHHHhhcCCC-ceEEccccccccccchhhHHHhhhhhhhhhhC--CCceeccCCCcCC
Q 013955 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (433)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~l~~i~~~~p-d~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~--iP~~~v~GNHD~~ 208 (433)
-++.++||+|.... ...+++.+..... +.+|++||+++.+... -+.+ ..+..+.-. --++.+.||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~S--lEvl-~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWG--LETF-LLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCCh--HHHH-HHHHHHhhccCCeEEEEeeecccc
Confidence 36899999986532 1233333322223 4599999999876532 1221 122222212 2478899999985
No 127
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=93.55 E-value=0.056 Score=51.76 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=40.0
Q ss_pred EEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhh-hhhhhCCCceeccCCCcCC
Q 013955 139 FAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 139 f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~-~~l~~~iP~~~v~GNHD~~ 208 (433)
+.++||+|... ...++++.+.....+-++++||+++.+.... +.+...+ -.+.....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSV--ETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCHH--HHHHHHHHHhhccCCeEEEEecccchH
Confidence 68899998542 2233455554445557889999998765321 2211111 0111223588999999974
No 128
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=93.52 E-value=0.07 Score=51.61 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=40.5
Q ss_pred EEEEEecCCCCC-ChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhC--CCceeccCCCcCC
Q 013955 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~--iP~~~v~GNHD~~ 208 (433)
.++++||+|... ...++++.......+-+|++||+++.+... .+.+ ..+..+.-. --++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s--~evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQS--LETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCc--HHHH-HHHHHhcccCCCceEEEecccchh
Confidence 488999998542 223344444444556789999999876531 1221 111122111 2478899999984
No 129
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=92.41 E-value=3.4 Score=38.57 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCCeEEEEEecCCCCCChHHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCC
Q 013955 134 QFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~ 209 (433)
..-.||+.++|+|...... . .-..-|+++++||.+.-+.. .+-..|.+.+..+.-.. =+++.||||..-
T Consensus 59 ~~~~r~VcisdtH~~~~~i---~--~~p~gDvlihagdfT~~g~~-~ev~~fn~~~gslph~y-KIVIaGNHELtF 127 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFDI---N--DIPDGDVLIHAGDFTNLGLP-EEVIKFNEWLGSLPHEY-KIVIAGNHELTF 127 (305)
T ss_pred CCceEEEEecCcccccCcc---c--cCCCCceEEeccCCccccCH-HHHHhhhHHhccCccee-eEEEeeccceee
Confidence 5668999999998643221 1 24577899999999875443 22234444333332222 256899999953
No 130
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=92.04 E-value=1.3 Score=31.75 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=39.9
Q ss_pred CceEEEEecCCCcEEEEEEcCCCCC--CcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEEEec
Q 013955 43 PQQVHISLAGDSHMRVTWITDDESS--PSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG 120 (433)
Q Consensus 43 p~qv~l~~~~~~~~~i~W~t~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y~v~ 120 (433)
|..+++.....+++.|+|....... ...++|........ .... .. ......+...+.+|+|++.|.++|.
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~--~~~~--~~----~~~~~~~~~~i~~L~~~~~Y~v~v~ 75 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG--SSWK--EV----NVTPSSTSYTLTGLKPGTEYEFRVR 75 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCCCCccEEEEEEEEecCC--CccE--EE----EecCCccEEEEeCcCCCCEEEEEEE
Confidence 3336666556669999998553221 23455554432111 0000 00 0111156788999999999999985
Q ss_pred c
Q 013955 121 R 121 (433)
Q Consensus 121 ~ 121 (433)
.
T Consensus 76 a 76 (83)
T smart00060 76 A 76 (83)
T ss_pred E
Confidence 3
No 131
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=91.76 E-value=0.19 Score=45.62 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=53.7
Q ss_pred EEEEecCCCCCCh------HHHHHHhh-cCCCceEEccccccccccchh---------hH-H----HhhhhhhhhhhCCC
Q 013955 139 FAVAGDLGQTGWT------KSTLDHIG-QCKYDVHLLPGDLSYADYMQH---------RW-D----TFGELVQPLASARP 197 (433)
Q Consensus 139 f~~~gD~~~~~~~------~~~l~~i~-~~~pd~vl~~GD~~~~~~~~~---------~w-~----~~~~~~~~l~~~iP 197 (433)
|++++|.+..... .+.++.+. ..+|+.+|++|++++...... .. . .+.+.+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788998776332 23334445 778999999999998543210 11 1 11223334445689
Q ss_pred ceeccCCCcCCCCCcc-ccccccc-ccccccCCCCCCCCCCceEEEEeCeEEEEEEcc
Q 013955 198 WMVTQGNHEKESIPLI-MDAFQSY-NARWKMPFEESGSNSNLYYSFDVAGAHLIMLGS 253 (433)
Q Consensus 198 ~~~v~GNHD~~~~~~~-~~~~~~y-~~~~~~p~~~~~~~~~~~ys~~~g~v~fi~lds 253 (433)
++.+||+||....+.. +..+... ..... ....-..-..-+.+.+++..|.+...
T Consensus 81 vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~--~~~~~~~~sNP~~~~i~~~~i~~~s~ 136 (209)
T PF04042_consen 81 VVLVPGPNDPTSSPVLPQPPLHSKLFPKLK--KYSNIHFVSNPCRISINGQEIGVTSG 136 (209)
T ss_dssp EEEE--TTCTT-S-SCSB----TTTTCHHC--TTTTEEE--CSEEEEETTEEEEE-SS
T ss_pred EEEeCCCccccccCCCCCCCCCHHHHhhhh--hcCceEEeCCCeEEEEeCCcEEEECC
Confidence 9999999998654111 1111100 00000 00000001234678889999888765
No 132
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=91.73 E-value=0.22 Score=48.25 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCcEEEecCc
Q 013955 305 MAIMEPLLYAASVDLVLAGHV 325 (433)
Q Consensus 305 ~~~l~~l~~~~~VdlvlsGH~ 325 (433)
.+.+...+++.+.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 578899999999999999998
No 133
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=91.54 E-value=0.31 Score=47.21 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=38.6
Q ss_pred eEEEEEecCCCCC-ChHHHHHHhhc-CCCceEEccccccccccchhhHHHhhhhhhhhh--hCCCceeccCCCcCC
Q 013955 137 ITFAVAGDLGQTG-WTKSTLDHIGQ-CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (433)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~l~~i~~-~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~--~~iP~~~v~GNHD~~ 208 (433)
-++.++||+|... ...++++.+.- ..-|-+|++||+++.+... -+.+. .+-.+. ..--++.+.||||..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S--~Evl~-ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFS--VEVIL-TLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCCh--HHHHH-HHHHhhhccCCceEEEeeccchH
Confidence 4689999998542 12223333321 1235799999999876542 12211 111121 112367899999973
No 134
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=89.86 E-value=0.56 Score=51.99 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=54.3
Q ss_pred CCCCCCCCCceEEEEecCCCcEEEEEEcCCCCCC------cEEEEeccCCCCC--e-eEEeeeeEEeeeeeecCeEEEEE
Q 013955 35 WDPKPSSHPQQVHISLAGDSHMRVTWITDDESSP------SVVEYGTSPGGYN--C-GAEGESTSYRYLFYRSGKIHHTV 105 (433)
Q Consensus 35 ~~~~~~~~p~qv~l~~~~~~~~~i~W~t~~~~~~------~~v~y~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~v~ 105 (433)
.+..++..|+.|.|....+++++|.|..+..... -.++|+..+.... . .+.+ ...+-.
T Consensus 611 lsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~-------------n~~~~l 677 (1381)
T KOG4221|consen 611 LSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG-------------NTTQYL 677 (1381)
T ss_pred ccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc-------------chhhhH
Confidence 4456777777799998889999999998864321 1334443332211 1 1111 112224
Q ss_pred eCCCCCCCEEEEEecc--------cCCeeEEECCC
Q 013955 106 IGPLEHDTVYFYRCGR--------QGPEFEFKTPP 132 (433)
Q Consensus 106 l~~L~p~t~Y~Y~v~~--------~s~~~~F~T~p 132 (433)
+++|+|+|.|.+||.. .|++..+.|+-
T Consensus 678 ~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 678 FNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred hhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 6789999999999953 36778888854
No 135
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=88.91 E-value=2.2 Score=31.44 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCCC----CcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEE
Q 013955 42 HPQQVHISLAGDSHMRVTWITDDESS----PSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (433)
Q Consensus 42 ~p~qv~l~~~~~~~~~i~W~t~~~~~----~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y 117 (433)
.|..+.+.....+++.|.|....... .-.|+|..... .... ... ........+.+.+|.|++.|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~-~~~~------~~~---~~~~~~~~~~i~~l~p~~~Y~~ 72 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGS-GDWK------EVE---VTPGSETSYTLTGLKPGTEYEF 72 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCC-CCCE------Eee---ccCCcccEEEEccccCCCEEEE
Confidence 34445555555789999998774321 12233332210 0000 000 1112456678899999999999
Q ss_pred Eecc
Q 013955 118 RCGR 121 (433)
Q Consensus 118 ~v~~ 121 (433)
+|..
T Consensus 73 ~v~a 76 (93)
T cd00063 73 RVRA 76 (93)
T ss_pred EEEE
Confidence 9854
No 136
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=88.39 E-value=1.6 Score=48.17 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=56.6
Q ss_pred CcccCCCCCCCCCCceEEEEecCCCcEEEEEEcCC----CCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEE
Q 013955 30 TLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDD----ESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTV 105 (433)
Q Consensus 30 ~~~~~~~~~~~~~p~qv~l~~~~~~~~~i~W~t~~----~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 105 (433)
++...-+-.+..+|..+.+.-.+.++|.|.|.... ......|+|....+.. +..... ...+..-.++
T Consensus 810 ~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~-----~~~~~~----~i~~~~~~~~ 880 (1051)
T KOG3513|consen 810 TVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKE-----GSLSRV----QIAGNRTSWR 880 (1051)
T ss_pred EEEEcCCCCCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCc-----ccccce----eecCCcceEe
Confidence 34444556788899999888777999999995442 2345678888775443 111010 1224556688
Q ss_pred eCCCCCCCEEEEEecc
Q 013955 106 IGPLEHDTVYFYRCGR 121 (433)
Q Consensus 106 l~~L~p~t~Y~Y~v~~ 121 (433)
|+||+|+|.|++.|..
T Consensus 881 ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 881 LTGLEPNTKYRFYVRA 896 (1051)
T ss_pred eeCCCCCceEEEEEEE
Confidence 9999999999999864
No 137
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.63 E-value=3.7 Score=41.04 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=46.4
Q ss_pred CeEEEEEecCCCCCChHHHHHHhh-----cCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCC
Q 013955 136 PITFAVAGDLGQTGWTKSTLDHIG-----QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (433)
Q Consensus 136 ~~~f~~~gD~~~~~~~~~~l~~i~-----~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNH 205 (433)
+.++++.||.. +....++++|. ....|+++++|++...+....+|..+.+-...+. +|.|+.-+|-
T Consensus 5 ~~kILv~Gd~~--Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vP--iptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVE--GRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVP--IPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCcc--ccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCc--eeEEEecCCC
Confidence 46999999973 34566666664 3459999999999976555567766655544443 7888766665
No 138
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=71.47 E-value=19 Score=34.28 Aligned_cols=83 Identities=8% Similarity=0.036 Sum_probs=47.8
Q ss_pred eEEECCCCCCCeEEEEEecCCCCCCh-----HHHHHHhh-----cCCCceEEccccccccc-----cchhhH----HHhh
Q 013955 126 FEFKTPPAQFPITFAVAGDLGQTGWT-----KSTLDHIG-----QCKYDVHLLPGDLSYAD-----YMQHRW----DTFG 186 (433)
Q Consensus 126 ~~F~T~p~~~~~~f~~~gD~~~~~~~-----~~~l~~i~-----~~~pd~vl~~GD~~~~~-----~~~~~w----~~~~ 186 (433)
|+.-........+|+++||.+..... +++++... ...|-.+|+.|+++... .....+ +.+.
T Consensus 17 ~~~~~~~~~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La 96 (291)
T PTZ00235 17 YEIIVRKNDKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLS 96 (291)
T ss_pred EEEEEecCCCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHH
Confidence 44433344677899999999876431 12222222 12388999999997542 111122 2222
Q ss_pred h-hhh---hhhhCCCceeccCCCcCC
Q 013955 187 E-LVQ---PLASARPWMVTQGNHEKE 208 (433)
Q Consensus 187 ~-~~~---~l~~~iP~~~v~GNHD~~ 208 (433)
. .+. .+....-++.|||-.|-.
T Consensus 97 ~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 97 VMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHhChHHHhcCeEEEECCCCCCC
Confidence 2 121 234457799999999974
No 139
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=67.58 E-value=11 Score=34.78 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=38.3
Q ss_pred EEEecCCCCCChHHHHHHhh---cCCCceEEccccccccccchhhHHHhhhhhhhhhhC--CCceeccCCCcCCC
Q 013955 140 AVAGDLGQTGWTKSTLDHIG---QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKES 209 (433)
Q Consensus 140 ~~~gD~~~~~~~~~~l~~i~---~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~--iP~~~v~GNHD~~~ 209 (433)
.+.||+|.. ...+++-.. ...-.=-+++||+++.+-. .-+.|.-++ .+... --+..+.||||...
T Consensus 46 tvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDRG~~--SvEt~lLLl-~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 46 TVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDRGYY--SVETFLLLL-ALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred EEeecccch--HHHHHHHHHhCCCCCCCceEeecchhccccc--hHHHHHHHH-HHhhcCcceeEEeeccchhhh
Confidence 789999854 344554443 2222347899999987654 233433222 12222 33677999999864
No 140
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=65.18 E-value=21 Score=39.85 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCC---CCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEE
Q 013955 39 PSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPG---GYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVY 115 (433)
Q Consensus 39 ~~~~p~qv~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y 115 (433)
+...|.+|++.-.+.+.++++|.-......+...|..... ...+.+..+. .....+. +.+++-+|.|-..|
T Consensus 614 pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~v-----p~~~~~~-~sa~vv~L~Pwv~Y 687 (1051)
T KOG3513|consen 614 PPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTV-----PGNITGD-ESATVVNLSPWVEY 687 (1051)
T ss_pred CCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeEC-----CCcccCc-cceeEEccCCCcce
Confidence 4447788988867799999999987655455566654321 2233333221 1122334 66888999999999
Q ss_pred EEEecc
Q 013955 116 FYRCGR 121 (433)
Q Consensus 116 ~Y~v~~ 121 (433)
.|||..
T Consensus 688 eFRV~A 693 (1051)
T KOG3513|consen 688 EFRVVA 693 (1051)
T ss_pred EEEEEE
Confidence 999864
No 141
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=63.90 E-value=3.4 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=10.8
Q ss_pred CCchhhhHHHHHH-HhccC
Q 013955 1 MELKFVLTAFVFI-SATVT 18 (433)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~ 18 (433)
|+||+++.++.++ +|.|+
T Consensus 6 mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3566666666555 66665
No 142
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=63.87 E-value=7.6 Score=37.86 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCChHHHHHHhhc---CCCc-eEEccccccccccchhhHHHhhhhh-hhhhhCCCceeccCCCcCCCC
Q 013955 138 TFAVAGDLGQTGWTKSTLDHIGQ---CKYD-VHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKESI 210 (433)
Q Consensus 138 ~f~~~gD~~~~~~~~~~l~~i~~---~~pd-~vl~~GD~~~~~~~~~~w~~~~~~~-~~l~~~iP~~~v~GNHD~~~~ 210 (433)
-+.++||+|... ..+++-+.. ..|+ -.|++||+++.+... .+.+.-++ -.+.-.--++...||||....
T Consensus 60 PV~i~GDiHGq~--~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~s--lE~i~LL~a~Ki~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 60 PVKIVGDIHGQF--GDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQS--LETICLLFALKIKYPENVFLLRGNHECASI 133 (331)
T ss_pred CEEEEccCcCCH--HHHHHHHHhcCCCCCcccEEEecccccCCccc--eEEeehhhhhhhhCCceEEEeccccccccc
Confidence 478899997553 344444432 2244 589999999977641 21111000 011112448899999999754
No 143
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=62.73 E-value=7.4 Score=33.80 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=23.2
Q ss_pred eEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 281 WLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 281 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
..|+++|.|...... +.+.+++++||+|......
T Consensus 108 ~~i~l~H~~~~~~~~------------------~~~~d~vi~GHtH~~~~~~ 141 (168)
T cd07390 108 RRVYLSHYPILEWNG------------------LDRGSWNLHGHIHSNSPDI 141 (168)
T ss_pred EEEEEEeCCcccCCC------------------CCCCeEEEEeeeCCCCCCC
Confidence 479999976432110 2467899999999876553
No 144
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=62.19 E-value=41 Score=38.13 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEEEecc
Q 013955 42 HPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 42 ~p~qv~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y~v~~ 121 (433)
.|.++...-....++.|.|..+.....+...|..--... -.+... ......++.+|+||+|.|.|.|||..
T Consensus 523 gp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~---~~~~~~------~~~~n~~e~ti~gL~k~TeY~~~vvA 593 (1381)
T KOG4221|consen 523 GPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED---DTGKEL------RVENNATEYTINGLEKYTEYSIRVVA 593 (1381)
T ss_pred CCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC---CCCceE------EEecCccEEEeecCCCccceEEEEEE
Confidence 445533333348899999999865555555554321000 001100 11223455678899999999999864
Q ss_pred --------cCCeeEEECC
Q 013955 122 --------QGPEFEFKTP 131 (433)
Q Consensus 122 --------~s~~~~F~T~ 131 (433)
.|...+++|.
T Consensus 594 ~N~~G~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 594 YNSAGSGVSSADITVRTL 611 (1381)
T ss_pred ecCCCCCCCCCceEEEec
Confidence 2466777774
No 145
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=60.74 E-value=42 Score=28.70 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.7
Q ss_pred EeCCCCCCCEEEEEe
Q 013955 105 VIGPLEHDTVYFYRC 119 (433)
Q Consensus 105 ~l~~L~p~t~Y~Y~v 119 (433)
.+++|.|||.|+.+.
T Consensus 105 qVtNL~pGTkY~isY 119 (184)
T PF07353_consen 105 QVTNLQPGTKYYISY 119 (184)
T ss_pred EeeccCCCcEEEEEE
Confidence 468999999998774
No 146
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=59.41 E-value=19 Score=32.61 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=38.1
Q ss_pred EEEEecCCCCCChHHHHHHhh--cCCCce-EEccccccccccchhhHHHhhhhhhhhhhCCC--ceeccCCCcCC
Q 013955 139 FAVAGDLGQTGWTKSTLDHIG--QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLASARP--WMVTQGNHEKE 208 (433)
Q Consensus 139 f~~~gD~~~~~~~~~~l~~i~--~~~pd~-vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP--~~~v~GNHD~~ 208 (433)
+.+.||+|.. ...+++..+ ..-||- -|++||+++.+-. ..+.|.-++ -+..+.| +-.+.||||..
T Consensus 48 VTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyy--SLEtfT~l~-~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDRGYY--SLETFTLLL-LLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchh--HHHHHHHHHhcCCCCCcceEEeccccccccc--cHHHHHHHH-HHhhcCCceeEEeeccchhh
Confidence 3578999754 344555443 233453 6789999987654 334433222 2222333 55689999985
No 147
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=51.86 E-value=17 Score=33.84 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=38.2
Q ss_pred EEEEecCCCCCChHHHHHHhh--cCCCce-EEccccccccccchhhHHHhhhhhhhhh--hCCCceeccCCCcCC
Q 013955 139 FAVAGDLGQTGWTKSTLDHIG--QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (433)
Q Consensus 139 f~~~gD~~~~~~~~~~l~~i~--~~~pd~-vl~~GD~~~~~~~~~~w~~~~~~~~~l~--~~iP~~~v~GNHD~~ 208 (433)
..+.||.|.. ....++.++ ...||. .+++||.++.+....+-- ..+-.+. -.--+-.++||||..
T Consensus 62 vtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvdrGy~SvetV---S~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVETV---SLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecccccchHHHH---HHHHHhhccccceeEEecCchHHH
Confidence 5678999754 445555443 556665 788999998765422211 1111111 112356689999984
No 148
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=48.33 E-value=41 Score=31.31 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCCCCChHHHHHHhhcCCCceEEccccccccccch---hhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 134 QFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQ---HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~~~~~~~---~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
.+..+|++.+|.+ +......++.+.+.+|+++|+.|=.+|-.+.. ...+.-.+.++.+....+--.+..-|=..
T Consensus 174 dg~~~i~faSDvq-Gp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllR 250 (304)
T COG2248 174 DGKSSIVFASDVQ-GPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLR 250 (304)
T ss_pred cCCeEEEEccccc-CCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhc
Confidence 4678899999995 44566789999999999999999999654431 11122223344454455555566666554
No 149
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=46.42 E-value=1.1e+02 Score=24.08 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCceEEEEecCCCcEEEEEEcCCCC---CCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCC--CCCEEE
Q 013955 42 HPQQVHISLAGDSHMRVTWITDDES---SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLE--HDTVYF 116 (433)
Q Consensus 42 ~p~qv~l~~~~~~~~~i~W~t~~~~---~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~--p~t~Y~ 116 (433)
.|+.|.+... .-..++.|.-.... ..-+|+|..... ..+.....+... . ..+..|+... +...|+
T Consensus 24 ~P~nv~~~s~-nf~~iL~W~~~~~~~~~~~ytVq~~~~~~-~~W~~v~~C~~i------~--~~~Cdlt~~~~~~~~~Y~ 93 (107)
T PF01108_consen 24 APQNVTVDSV-NFKHILRWDPGPGSPPNVTYTVQYKKYGS-SSWKDVPGCQNI------T--ETSCDLTDETSDPSESYY 93 (107)
T ss_dssp SCEEEEEEEE-TTEEEEEEEESTTSSSTEEEEEEEEESST-SCEEEECCEEEE------S--SSEEECTTCCTTTTSEEE
T ss_pred CCCeeEEEEE-CCceEEEeCCCCCCCCCeEEEEEEEecCC-cceeeccceecc------c--ccceeCcchhhcCcCCEE
Confidence 5777766643 44678899984322 224677773322 233333222111 1 1345566544 678899
Q ss_pred EEecc
Q 013955 117 YRCGR 121 (433)
Q Consensus 117 Y~v~~ 121 (433)
.||..
T Consensus 94 ~rV~A 98 (107)
T PF01108_consen 94 ARVRA 98 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99865
No 150
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=45.96 E-value=17 Score=34.11 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCc-EEEecCccc
Q 013955 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVHA 327 (433)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd-lvlsGH~H~ 327 (433)
++|+.-|+..++-..+ ++-.|.| + ..+.+.+.+|++++++| +||+||+-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~----------E-~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK----------E-KEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec----------c-hhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 5677777766443332 3344443 1 13568999999999999 689999964
No 151
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=44.73 E-value=21 Score=33.67 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCc-EEEecCcccc
Q 013955 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVHAY 328 (433)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd-lvlsGH~H~y 328 (433)
++|+.-|+..+.-..+ ..-.|.| + ..+.+.+.+|++++++| +||+||+=..
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~----------E-~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP----------E-KEQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec----------h-HHhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 5677777766432332 3333433 1 24668999999999999 7899999753
No 152
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=44.68 E-value=42 Score=26.36 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCCCceEEEEecCCCcEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeecCeEEEEEeCCCCCCCEEEEE
Q 013955 39 PSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYR 118 (433)
Q Consensus 39 ~~~~p~qv~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~L~p~t~Y~Y~ 118 (433)
....|..+.+. ....++|.|...+.. ...+..... ... .. -.++-.-.++++.++||+ |.|.
T Consensus 30 ~~f~P~~i~v~--~G~~v~l~~~N~~~~-~h~~~i~~~----~~~--~~--------l~~g~~~~~~f~~~~~G~-y~~~ 91 (104)
T PF13473_consen 30 FGFSPSTITVK--AGQPVTLTFTNNDSR-PHEFVIPDL----GIS--KV--------LPPGETATVTFTPLKPGE-YEFY 91 (104)
T ss_dssp EEEES-EEEEE--TTCEEEEEEEE-SSS--EEEEEGGG----TEE--EE--------E-TT-EEEEEEEE-S-EE-EEEB
T ss_pred CeEecCEEEEc--CCCeEEEEEEECCCC-cEEEEECCC----ceE--EE--------ECCCCEEEEEEcCCCCEE-EEEE
Confidence 34566666554 455678888766432 233333221 110 00 123444556666788876 7777
Q ss_pred ecc
Q 013955 119 CGR 121 (433)
Q Consensus 119 v~~ 121 (433)
|..
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 653
No 153
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=42.01 E-value=65 Score=31.97 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHHHHhhccccCCCCeEEEEecccc-cCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccceeee
Q 013955 264 YRWLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 332 (433)
.+=++.+++.+++ ..+-+|++.|+-. |... ....+.++..-+...++++++.+|-|..+-..
T Consensus 210 ~~~~~~~v~~a~k-~adlviv~~HwG~ey~~~------p~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 210 LERVLAAVLAAKK-GADLVIVQPHWGVEYAYE------PAAGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhhHHHHHhhhc-cCCEEEEeccccccccCC------CcHHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 3445555555555 5677999999842 2221 11335666666666999999999999987654
No 154
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=39.33 E-value=34 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=23.8
Q ss_pred EEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 013955 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (433)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 328 (433)
-++++|||++-.....-.......+.+.. +.++++ .+++-|+..-
T Consensus 55 dlIItHHP~~f~~~~~~~~~~~~~~~~~~-li~~~I-~vy~~Ht~lD 99 (241)
T PF01784_consen 55 DLIITHHPLFFKPLKSLTGDDYKGKIIEK-LIKNGI-SVYSAHTNLD 99 (241)
T ss_dssp SEEEESS-SSSSTSSHCHCHSHHHHHHHH-HHHTT--EEEEESHHHH
T ss_pred CEEEEcCchhhcCCccccccchhhHHHHH-HHHCCC-EEEEeccccc
Confidence 37889999865332211111123344444 445788 6788898753
No 155
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=35.46 E-value=48 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=36.4
Q ss_pred EEEEEecCCCCCChHHHHHHhh-cCCC--ceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCC
Q 013955 138 TFAVAGDLGQTGWTKSTLDHIG-QCKY--DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (433)
Q Consensus 138 ~f~~~gD~~~~~~~~~~l~~i~-~~~p--d~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~ 208 (433)
-+.+.||+|.. .-.+++... ..+| ---+++||.++.+...-+---+.-.++ +.-..-++...||||..
T Consensus 89 PiTVCGDIHGQ--f~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLK-i~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQ--FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLK-INYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchH--HHHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHh-cCCCCeEEEecCCcchh
Confidence 35688999754 233444443 2223 247899999987643111001111111 11124477899999984
No 156
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=33.70 E-value=56 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred cCeEEEEEeCCCCCCCEEEEEecc
Q 013955 98 SGKIHHTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 98 ~~~~~~v~l~~L~p~t~Y~Y~v~~ 121 (433)
.+-+.++.+.++.+|+.|.|+|..
T Consensus 43 ~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 43 YGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred cCCEEEEEECCCCCCCEEEEEECC
Confidence 456788999999999999999954
No 157
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=33.31 E-value=55 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred CeEEEEEeCCCCCCCEEEEEec
Q 013955 99 GKIHHTVIGPLEHDTVYFYRCG 120 (433)
Q Consensus 99 ~~~~~v~l~~L~p~t~Y~Y~v~ 120 (433)
+-++++.+.++.+|+.|.|+|.
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~ 69 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVD 69 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEEC
Confidence 4578899999999999999996
No 158
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=32.36 E-value=30 Score=36.38 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=29.2
Q ss_pred hhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcC
Q 013955 158 IGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (433)
Q Consensus 158 i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~ 207 (433)
|++.-.|-+=++||+.+.+.... . .++.|...--+=.-|||||.
T Consensus 180 IqrL~VDhLHIvGDIyDRGp~pd---~---ImD~Lm~~hsvDIQWGNHDI 223 (640)
T PF06874_consen 180 IQRLAVDHLHIVGDIYDRGPRPD---K---IMDRLMNYHSVDIQWGNHDI 223 (640)
T ss_pred HHHHhhhheeecccccCCCCChh---H---HHHHHhcCCCccccccchHH
Confidence 45778999999999988765422 1 23333333334457999998
No 159
>PRK10301 hypothetical protein; Provisional
Probab=32.24 E-value=2.8e+02 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=13.7
Q ss_pred eEEEEEeC-CCCCCCE-EEEEecc
Q 013955 100 KIHHTVIG-PLEHDTV-YFYRCGR 121 (433)
Q Consensus 100 ~~~~v~l~-~L~p~t~-Y~Y~v~~ 121 (433)
....+.+. +|.||+- ..||+.+
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEe
Confidence 34456674 6899864 5666543
No 160
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.59 E-value=64 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.0
Q ss_pred CeEEEEEeCCCCCCCEEEEEec
Q 013955 99 GKIHHTVIGPLEHDTVYFYRCG 120 (433)
Q Consensus 99 ~~~~~v~l~~L~p~t~Y~Y~v~ 120 (433)
+-++++.+.++ +|..|.|++.
T Consensus 39 ~G~W~~~v~~~-~g~~Y~y~v~ 59 (85)
T cd02853 39 DGWFEAEVPGA-AGTRYRYRLD 59 (85)
T ss_pred CcEEEEEeCCC-CCCeEEEEEC
Confidence 34667899999 9999999996
No 161
>PRK11627 hypothetical protein; Provisional
Probab=29.84 E-value=1.3e+02 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.0
Q ss_pred CCchhhhHHH-HHHHhccC
Q 013955 1 MELKFVLTAF-VFISATVT 18 (433)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~ 18 (433)
|.||++|.|+ +++++.|+
T Consensus 1 mlkklll~l~a~~~L~gCA 19 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCA 19 (192)
T ss_pred ChHHHHHHHHHHHHHHhhc
Confidence 7889998777 56677777
No 162
>PRK13792 lysozyme inhibitor; Provisional
Probab=29.81 E-value=2.9e+02 Score=22.85 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=7.2
Q ss_pred CCchhhhHHHHHH
Q 013955 1 MELKFVLTAFVFI 13 (433)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (433)
|++.+.++|+++.
T Consensus 1 mk~~l~~ll~~~~ 13 (127)
T PRK13792 1 MKKALWLLLAAVP 13 (127)
T ss_pred ChhHHHHHHHHHH
Confidence 6665555555555
No 163
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.65 E-value=31 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=9.9
Q ss_pred CCchhhhHHHHHHHhc
Q 013955 1 MELKFVLTAFVFISAT 16 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (433)
|+.|++++.++|+...
T Consensus 1 MA~Kl~vialLC~aLv 16 (65)
T PF10731_consen 1 MASKLIVIALLCVALV 16 (65)
T ss_pred CcchhhHHHHHHHHHH
Confidence 7777776665555443
No 164
>PHA03008 hypothetical protein; Provisional
Probab=28.99 E-value=1.1e+02 Score=27.28 Aligned_cols=42 Identities=2% Similarity=0.044 Sum_probs=29.8
Q ss_pred EEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
|++.|-|++...+.+. ..+.|.+-+.+-++.+.+.||.-.|.
T Consensus 164 ILITHgPP~GhLD~~v-----GC~~Ll~~I~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 164 ILITASPPFAILDDDL-----ACGDLFSKVIKIKPKFHIFNGLTQFS 205 (234)
T ss_pred EEEeCCCCcccccccc-----CcHHHHHHHHHhCCcEEEeCCccccC
Confidence 8999999987654321 22445555567789999999977664
No 165
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=28.90 E-value=1.1e+02 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.2
Q ss_pred EEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 013955 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (433)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 328 (433)
-++++|||++-.......... ..+. ...+.++++ .+++-|+..-
T Consensus 59 dlIitHHP~~f~~~~~~~~~~-~~~~-~~~li~~~I-~vy~~Ht~lD 102 (249)
T TIGR00486 59 DLIITHHPLIWKPLKRLIRGI-KPGR-LKILLQNDI-SLYSAHTNLD 102 (249)
T ss_pred CEEEEcCccccCCcccccCCC-HHHH-HHHHHHCCC-eEEEeecchh
Confidence 378889998543321111111 2334 444677888 6788888753
No 166
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=28.51 E-value=2e+02 Score=31.71 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=57.7
Q ss_pred CceEEEEe--cCCCcEEEEEEcCCCCC-----CcEEEEeccCCCCC-----eeEEeeeeEEee--eee-----ecCeEEE
Q 013955 43 PQQVHISL--AGDSHMRVTWITDDESS-----PSVVEYGTSPGGYN-----CGAEGESTSYRY--LFY-----RSGKIHH 103 (433)
Q Consensus 43 p~qv~l~~--~~~~~~~i~W~t~~~~~-----~~~v~y~~~~~~~~-----~~~~~~~~~~~~--~~~-----~~~~~~~ 103 (433)
+.-++++. .+.+++.+.|.....+. .-.+.|...|.... ..+-|.. +... ... .++....
T Consensus 489 ~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~-~W~~~~v~~~~~~p~~~~~~~ 567 (1025)
T KOG4258|consen 489 DLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSN-SWNVVDVDPPDLIPNDGTHPG 567 (1025)
T ss_pred cceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccC-cceEEeccCCcCCCccccccc
Confidence 33344443 34889999998775331 23456666662211 1122221 1111 101 1123336
Q ss_pred EEeCCCCCCCEEEEEecc------------cCCeeEEECCCC--CCCeEEEEEecC
Q 013955 104 TVIGPLEHDTVYFYRCGR------------QGPEFEFKTPPA--QFPITFAVAGDL 145 (433)
Q Consensus 104 v~l~~L~p~t~Y~Y~v~~------------~s~~~~F~T~p~--~~~~~f~~~gD~ 145 (433)
..|.+|+|.|.|-|-|.. .|++.-++|.|. +-++..+.-++.
T Consensus 568 ~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~sns 623 (1025)
T KOG4258|consen 568 FLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNS 623 (1025)
T ss_pred eehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCc
Confidence 789999999999998863 267888999775 445555555554
No 167
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.49 E-value=71 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.9
Q ss_pred ecCeEEEEEeCCCCCCCEEEEEecc
Q 013955 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 97 ~~~~~~~v~l~~L~p~t~Y~Y~v~~ 121 (433)
..+-++++.+.++.+|..|.|++..
T Consensus 44 ~~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 44 GENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCCEEEEEeCCccCCcEEEEEEEE
Confidence 3456788999999999999999954
No 168
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=28.44 E-value=33 Score=31.11 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCchhhhHHHHHHHhccCC--------CccccCCCCCCcccC
Q 013955 1 MELKFVLTAFVFISATVTT--------AEYIRPQPRRTLEFP 34 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 34 (433)
|++-+++++++++++.|+. .+|.++.|..++.+|
T Consensus 1 mk~l~~~l~~~l~LsgCa~~~~~~~dy~a~~~~kPrSILVlP 42 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCATTKPPPYDYTAFKESKPRSILVLP 42 (215)
T ss_pred ChhHHHHHHHHHHHhhccCCCCccccHHHHhcCCCceEEEeC
Confidence 4444444445555666652 345455555444333
No 169
>PRK10799 metal-binding protein; Provisional
Probab=28.27 E-value=1.2e+02 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=25.7
Q ss_pred EEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecCcccce
Q 013955 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (433)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 329 (433)
+++.|||++-........ .........+.++++ .+++-|++.-.
T Consensus 59 lIitHHP~~~~~~~~~~~--~~~~~~~~~li~~~i-~vy~~Htn~D~ 102 (247)
T PRK10799 59 AVIVHHGYFWKGESPVIR--GMKRNRLKTLLANDI-NLYGWHLPLDA 102 (247)
T ss_pred EEEECCchhccCCCcccc--chHHHHHHHHHHCCC-eEEEEecchhh
Confidence 677999986433211111 123344445566777 67889998754
No 170
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=28.24 E-value=65 Score=30.20 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCC
Q 013955 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (433)
Q Consensus 152 ~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~ 231 (433)
..+++++.+.+...++..|--. ..|+...++.+.. -.++++.|=|=.....................
T Consensus 22 ~~~l~~a~~~gv~~~~~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~---- 88 (258)
T PRK11449 22 EASLQRAAQAGVGKIIVPATEA------ENFARVLALAERY---QPLYAALGLHPGMLEKHSDVSLDQLQQALERR---- 88 (258)
T ss_pred HHHHHHHHHCCCCEEEEeeCCH------HHHHHHHHHHHhC---CCEEEEEeeCcCccccCCHHHHHHHHHHHHhC----
Confidence 3566666677777777766422 3455544443322 23788888885432110001111111111000
Q ss_pred CCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHH
Q 013955 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (433)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (433)
.+. +-.+-=|+||-.........|.++++++|+-+.+-+.| |+.|..- ..+.+.++
T Consensus 89 ---~~~-----~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~P---v~iH~r~-------------a~~~~~~i 144 (258)
T PRK11449 89 ---PAK-----VVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLP---VILHSRR-------------THDKLAMH 144 (258)
T ss_pred ---CCC-----EEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC---EEEEecC-------------ccHHHHHH
Confidence 000 01122355664322223468999999999988654544 5567641 11467777
Q ss_pred HHHcCCcEEEecCcccceee
Q 013955 312 LYAASVDLVLAGHVHAYERS 331 (433)
Q Consensus 312 ~~~~~VdlvlsGH~H~y~r~ 331 (433)
++++++. ..|..|.|.-+
T Consensus 145 l~~~~~~--~~~i~H~fsG~ 162 (258)
T PRK11449 145 LKRHDLP--RTGVVHGFSGS 162 (258)
T ss_pred HHhcCCC--CCeEEEcCCCC
Confidence 8887642 25677877644
No 171
>PRK13791 lysozyme inhibitor; Provisional
Probab=27.74 E-value=2.2e+02 Score=23.03 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHhccC
Q 013955 4 KFVLTAFVFISATVT 18 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (433)
++++++++++++.|+
T Consensus 6 ~~~~~~~~~~ls~~~ 20 (113)
T PRK13791 6 LIPFTLFLAALSAST 20 (113)
T ss_pred HHHHHHHHHHHhhhh
Confidence 444555555555555
No 172
>PF14292 SusE: SusE outer membrane protein
Probab=27.68 E-value=1.8e+02 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=14.7
Q ss_pred ceEEEEecCCCcEEEEEEcCCCC
Q 013955 44 QQVHISLAGDSHMRVTWITDDES 66 (433)
Q Consensus 44 ~qv~l~~~~~~~~~i~W~t~~~~ 66 (433)
..+-|.-...+.++++|......
T Consensus 35 ~~i~L~~~~~~a~tftW~~~~~~ 57 (122)
T PF14292_consen 35 SSIVLDEASDNAVTFTWTAADYG 57 (122)
T ss_pred ceEEecccCCceEEEEEECCccC
Confidence 33434433467899999987643
No 173
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=27.48 E-value=50 Score=25.77 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred EEEeCCCCCCCEEEEEecc
Q 013955 103 HTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 103 ~v~l~~L~p~t~Y~Y~v~~ 121 (433)
.+.|.+|+|++.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4579999999999999865
No 174
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=26.45 E-value=1.6e+02 Score=26.98 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCCCcceeE-eccccEEEEEEEcCceEEEEEEEeCCCCCeeeeEEEEEeCC
Q 013955 365 PQPDWSVFR-EASFGHGELKIVNSTHAFWSWHRNDDDEPVRSDQLWITSLV 414 (433)
Q Consensus 365 ~~p~~~~~~-~~~~G~~~l~v~~~~~l~~~~~~~~~g~~~v~d~f~i~~~~ 414 (433)
+.|.|.+|. +.+.|+.++++....|+ ||. .|+ ++++.|.++..+
T Consensus 27 ~s~~wkv~es~ee~~~lvltiv~sGh~---~I~--~G~-~lLEgfsLi~s~ 71 (243)
T PF15165_consen 27 SSPSWKVFESNEESGYLVLTIVISGHF---FIS--QGQ-TLLEGFSLIDSK 71 (243)
T ss_pred CCccceeecccccCCceEEEEEecceE---EEE--eCc-eeecceeeeccc
Confidence 346788885 35889999999888887 343 465 588888887664
No 175
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.72 E-value=1.4e+02 Score=23.91 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=10.5
Q ss_pred CchhhhHHHHHHHhccC
Q 013955 2 ELKFVLTAFVFISATVT 18 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (433)
||+++.++++++++.|.
T Consensus 3 mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 3 MKKLLIICLPVLLTGCS 19 (109)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 34556666666666666
No 176
>PRK10425 DNase TatD; Provisional
Probab=25.24 E-value=78 Score=29.67 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCceEEccccccccccchhhHHHhhhhhhhhhhCCCceeccCCCcCCCCCcccccccccccccccCCCCC
Q 013955 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (433)
Q Consensus 152 ~~~l~~i~~~~pd~vl~~GD~~~~~~~~~~w~~~~~~~~~l~~~iP~~~v~GNHD~~~~~~~~~~~~~y~~~~~~p~~~~ 231 (433)
..+++...+.+...++..|--. ..|....++.+.. -.++++.|=|=............... .+ -.
T Consensus 18 ~~vl~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~-~~--~~--- 82 (258)
T PRK10425 18 DDVVARAFAAGVNGMLITGTNL------RESQQAQKLARQY---PSCWSTAGVHPHDSSQWQAATEEAII-EL--AA--- 82 (258)
T ss_pred HHHHHHHHHCCCCEEEEeCCCH------HHHHHHHHHHHhC---CCEEEEEEeCcCccccCCHHHHHHHH-Hh--cc---
Confidence 4566666666766666666542 3555544443332 13778889885421100000111110 11 00
Q ss_pred CCCCCceEEEEeCeEEEEEEcccCCCCCChHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHH
Q 013955 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (433)
Q Consensus 232 ~~~~~~~ys~~~g~v~fi~lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (433)
.+. +-.+-=|+||-.........|.++++++|+-+.+-+.| |+.|.+ . ..+.+.++
T Consensus 83 ---~~~-----~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~P---v~iH~r-----~--------a~~~~l~i 138 (258)
T PRK10425 83 ---QPE-----VVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMP---VFMHCR-----D--------AHERFMAL 138 (258)
T ss_pred ---CCC-----EEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCC---eEEEEe-----C--------chHHHHHH
Confidence 000 00123356664322233478999999999987654544 566775 1 11456677
Q ss_pred HHHcCCcEEEecCcccceeee
Q 013955 312 LYAASVDLVLAGHVHAYERSI 332 (433)
Q Consensus 312 ~~~~~VdlvlsGH~H~y~r~~ 332 (433)
++++.... --|+.|.|..+.
T Consensus 139 L~~~~~~~-~~~i~H~fsG~~ 158 (258)
T PRK10425 139 LEPWLDKL-PGAVLHCFTGTR 158 (258)
T ss_pred HHHhccCC-CCeEEEecCCCH
Confidence 77652211 135568876543
No 177
>PRK09810 entericidin A; Provisional
Probab=24.98 E-value=43 Score=21.74 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=6.8
Q ss_pred CCchhhhHHHHHH
Q 013955 1 MELKFVLTAFVFI 13 (433)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (433)
|++|+++++++.+
T Consensus 1 mMkk~~~l~~~~~ 13 (41)
T PRK09810 1 MMKRLIVLVLLAS 13 (41)
T ss_pred ChHHHHHHHHHHH
Confidence 6666555544333
No 178
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=24.30 E-value=67 Score=30.85 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.6
Q ss_pred EEEEeCCCCCCCEEEEEec
Q 013955 102 HHTVIGPLEHDTVYFYRCG 120 (433)
Q Consensus 102 ~~v~l~~L~p~t~Y~Y~v~ 120 (433)
...+|.+|+|+|.||+.|-
T Consensus 15 t~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 15 TNQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred ceEEeccCCCCCeEEEEEE
Confidence 3456789999999999974
No 179
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.36 E-value=1.9e+02 Score=28.69 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=12.5
Q ss_pred hhh-hHHHHHHHhccCCCccccCC
Q 013955 4 KFV-LTAFVFISATVTTAEYIRPQ 26 (433)
Q Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~ 26 (433)
+++ |+|+.|||.++....|.++.
T Consensus 12 rIiaff~A~~Lfl~vn~~n~~N~~ 35 (403)
T COG4856 12 RIIAFFFAILLFLYVNNNNFNNPI 35 (403)
T ss_pred HHHHHHHHHHhheeecccccCCcc
Confidence 455 45555555556645565555
No 180
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.98 E-value=3.2e+02 Score=23.62 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhccccCCCCeEEEEecccccCCCCCCCCCChhHHHHHHHHHHHcCCcEEEecC
Q 013955 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGH 324 (433)
Q Consensus 261 ~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH 324 (433)
++..+-+.+.|++. -....|+..|+|.+. ....+.+.+.+.+.++|+++.|=
T Consensus 58 ~~~~~~~~~~l~~~---yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 58 EEVLEKAAANLRRR---YPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHHH---CCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEEC
Confidence 45555566666653 112356666666551 12446788889999999999873
No 181
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=21.64 E-value=2e+02 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.0
Q ss_pred cCeEEEEEeCCCCCCCEEEEEecc
Q 013955 98 SGKIHHTVIGPLEHDTVYFYRCGR 121 (433)
Q Consensus 98 ~~~~~~v~l~~L~p~t~Y~Y~v~~ 121 (433)
.|..+.-.=.+|++|..|.|++..
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEE
Confidence 455666666799999999999865
No 182
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.58 E-value=5.6e+02 Score=23.46 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=8.2
Q ss_pred ceEEEEecC-CCcEEEEE
Q 013955 44 QQVHISLAG-DSHMRVTW 60 (433)
Q Consensus 44 ~qv~l~~~~-~~~~~i~W 60 (433)
.+.++.+.+ ..+.+++-
T Consensus 29 ~~tRvi~~~~~~~~si~v 46 (230)
T PRK09918 29 ETSVVIVEESDGEGSINV 46 (230)
T ss_pred ccEEEEEECCCCeEEEEE
Confidence 344455555 44444444
No 183
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.51 E-value=2e+02 Score=21.13 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.4
Q ss_pred cCeEEEEEeC-CCCCCC-EEEEEeccc
Q 013955 98 SGKIHHTVIG-PLEHDT-VYFYRCGRQ 122 (433)
Q Consensus 98 ~~~~~~v~l~-~L~p~t-~Y~Y~v~~~ 122 (433)
..-+++++|. +|.+|. .|.|+|...
T Consensus 47 ~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 47 DDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp TTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 4457778888 899985 999999654
No 184
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=20.29 E-value=1.6e+02 Score=25.94 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=23.8
Q ss_pred ecCeEEEEEeCCCCCCCEEEEEecc-cCCeeEEE
Q 013955 97 RSGKIHHTVIGPLEHDTVYFYRCGR-QGPEFEFK 129 (433)
Q Consensus 97 ~~~~~~~v~l~~L~p~t~Y~Y~v~~-~s~~~~F~ 129 (433)
..+....++|++|++|..|+-|++- ....++|+
T Consensus 61 ~~~~t~~V~L~nl~~~e~y~vKiCW~At~P~sf~ 94 (180)
T PF10333_consen 61 QPGSTTYVELNNLQPGETYQVKICWPATDPISFD 94 (180)
T ss_pred CCCceEEEEeccCCCCCeEEEEEEEeccCceEEe
Confidence 3456777899999999999999752 33344443
No 185
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=20.16 E-value=1.3e+02 Score=21.74 Aligned_cols=18 Identities=33% Similarity=0.207 Sum_probs=13.8
Q ss_pred CCchhhhHHHHHHHhccC
Q 013955 1 MELKFVLTAFVFISATVT 18 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (433)
|+.-.+|+|++++.+.+-
T Consensus 1 MKhFaiLilavVaSAvVM 18 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVM 18 (78)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 566678888888888765
Done!