BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013956
         (433 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/351 (40%), Positives = 209/351 (59%), Gaps = 10/351 (2%)

Query: 83  DIWSSRNAQFYHGCSIASSKFAKAGDVTHSNRYLAIVTSGGLNQQRTGIIDAVVAARILN 142
           ++W S  +  +   S   S +        +N YL +  +GGLNQQR+ I +AV+AARI+N
Sbjct: 61  ELWESAKSGGWRPSSAPRSDWPPP--TKETNGYLRVRCNGGLNQQRSAICNAVLAARIMN 118

Query: 143 ATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSKDVKIIKQIP--RKGGKS--LTPYHM 198
           ATLV+P+LD  SFW D S F  I+DV+ FI  L  DVKI+ +IP   K GK+  +  + +
Sbjct: 119 ATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQI 178

Query: 199 RVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDYRLANKLDT-DLQKLRCRVNYHALSFTDS 257
           R PR    + Y    L  + +  A+ L+ F +RLA ++D  + Q+LRCRVNYHAL F   
Sbjct: 179 RPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPH 238

Query: 258 IQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHI 317
           I K+ E +V ++R +G H++++HLRFE DMLAF+GC+     +E+K L   RK       
Sbjct: 239 IMKLSESIVDKLRSQG-HFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKR 297

Query: 318 SNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYS 377
              ++ R  GKCPLTP EVGL+LRA+ + +   IY+A+GE++GGE+ + P + LFP   +
Sbjct: 298 LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDN 357

Query: 378 KETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNG--NMAKILAGRR 426
             ++   E    +S     +A+D++VC  SDIF+   +G  N A  L G R
Sbjct: 358 HSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHR 408


>sp|B3CM21|PNP_WOLPP Polyribonucleotide nucleotidyltransferase OS=Wolbachia pipientis
           subsp. Culex pipiens (strain wPip) GN=pnp PE=3 SV=1
          Length = 758

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 207 KCYQNRVLPVLLKRHAVQLS--KFDYRLANKLDTDL------QKLRCRVNYHALSFTDSI 258
           K ++  ++  +++R +V++   K+D     +++ D+        L  R +  AL  T   
Sbjct: 294 KSFERSLVREMIRRKSVRIDSRKYDEIRQIEIEADILPKTHGSALFTRGSTQALVVTALG 353

Query: 259 QKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHIS 318
               E++V  +    + +  LH  F P  +  +      G   R+E+G  +  WK +H  
Sbjct: 354 TTQDEQIVDDIEGDRREHFMLHYNFPPFAVGEASAIRAPG---RREIGHGKLAWKAIHPV 410

Query: 319 NPDK 322
            PDK
Sbjct: 411 LPDK 414


>sp|A9KJ27|GATB_CLOPH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
           18823 / ISDg) GN=gatB PE=3 SV=1
          Length = 478

 Score = 32.7 bits (73), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 12/154 (7%)

Query: 58  STDNVDGPTGVPVFRVQRDGGKLDRDIWSSRNAQFYHGCSIASSKFAKAGDVTHSNRYLA 117
             D +    G+    ++ D GKL  D W       Y+ C +   +     D+  +   +A
Sbjct: 109 EVDGIKKSIGIHEIHMEEDAGKLVHDPWEDCTLVDYNRCGVPLIEIVSEPDMRSAEEVIA 168

Query: 118 IVTSGGLNQQRTGIIDAVVAARILNATLVI-------PKLDQKSFWKDASDFSEIF---- 166
            +    L  Q  G+ D  +    L A + +       P+   ++  K+ + F  I     
Sbjct: 169 YLEKLKLILQYLGVSDCKMQEGSLRADINLSIREVGEPEFGTRTEMKNMNSFKAIARAIE 228

Query: 167 -DVDRFISVLSKDVKIIKQIPRKGGKSLTPYHMR 199
            +  R I +L    K+I++  R      T + MR
Sbjct: 229 GERKRQIELLEDGKKVIQETRRWDDNKDTSFAMR 262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,346,689
Number of Sequences: 539616
Number of extensions: 7022100
Number of successful extensions: 14582
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14575
Number of HSP's gapped (non-prelim): 5
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)