Query 013956
Match_columns 433
No_of_seqs 175 out of 379
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 5.3E-56 1.1E-60 436.6 4.5 293 120-429 6-342 (351)
2 KOG3849 GDP-fucose protein O-f 97.8 0.00018 3.8E-09 72.3 10.7 281 110-426 26-364 (386)
3 PF05830 NodZ: Nodulation prot 97.2 0.006 1.3E-07 62.2 13.0 254 113-420 2-289 (321)
4 KOG3705 Glycoprotein 6-alpha-L 61.5 25 0.00053 38.1 7.0 129 251-420 340-478 (580)
5 PF14771 DUF4476: Domain of un 58.6 5.4 0.00012 33.3 1.4 55 330-401 39-94 (95)
6 PLN02232 ubiquinone biosynthes 53.4 28 0.00062 31.4 5.3 99 246-357 48-152 (160)
7 PF00799 Gemini_AL1: Geminivir 43.9 27 0.00058 31.1 3.4 28 328-356 14-41 (114)
8 PF10892 DUF2688: Protein of u 36.9 26 0.00056 28.0 1.9 16 327-343 42-57 (60)
9 smart00874 B5 tRNA synthetase 28.0 48 0.001 25.8 2.2 24 323-347 12-35 (71)
10 TIGR01354 cyt_deam_tetra cytid 24.8 80 0.0017 28.0 3.3 47 331-381 80-127 (127)
11 PRK05578 cytidine deaminase; V 23.5 80 0.0017 28.5 3.0 95 277-382 26-131 (131)
12 PRK10556 hypothetical protein; 22.4 55 0.0012 29.0 1.7 19 331-349 3-21 (111)
13 COG0859 RfaF ADP-heptose:LPS h 21.3 1.1E+02 0.0023 31.0 3.8 73 334-426 198-271 (334)
14 PF03484 B5: tRNA synthetase B 21.0 57 0.0012 25.9 1.4 26 323-349 12-37 (70)
15 PF02324 Glyco_hydro_70: Glyco 21.0 68 0.0015 36.9 2.4 60 347-407 698-777 (809)
16 PRK15451 tRNA cmo(5)U34 methyl 20.9 45 0.00098 32.2 1.0 27 326-352 204-230 (247)
17 PF09400 DUF2002: Protein of u 20.3 62 0.0013 28.9 1.6 19 331-349 3-21 (111)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=5.3e-56 Score=436.60 Aligned_cols=293 Identities=36% Similarity=0.624 Sum_probs=203.7
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccCCCC-----CcccccHHHHHHHccccceecccCCccccCCCC
Q 013956 120 TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASD-----FSEIFDVDRFISVLSKDVKIIKQIPRKGGKSLT 194 (433)
Q Consensus 120 ~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D~S~-----F~dIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 194 (433)
+.||+||||.++++||++|++||+|||||.+.....|++.++ |+++||+++|++.++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999999999999865432100
Q ss_pred ------------------------------CccccCCC-CCChHHHHHhhhHhhhhc------ceEEEeccccccccc-C
Q 013956 195 ------------------------------PYHMRVPR-KCNEKCYQNRVLPVLLKR------HAVQLSKFDYRLANK-L 236 (433)
Q Consensus 195 ------------------------------~~~~~~p~-~~s~~yY~~~ilP~l~k~------~VI~l~~~~~rLa~~-l 236 (433)
........ +..+.+|.++++|.+.++ +++.|.++...+.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 11111222 567778888899999887 999999999998874 7
Q ss_pred chhhhhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcccCCCChhHHHHHHHHHHHhhhhc
Q 013956 237 DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLH 316 (433)
Q Consensus 237 p~eiQrLRCrvnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~ 316 (433)
+.++|| +|+|+++|+++|++++++|+..+++|||+|||+|+|| +++|.+++ ++..|..+|... ++
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~~--~~ 230 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCWG--KK 230 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhhc--cc
Confidence 888887 9999999999999999999955689999999999999 89999955 677788788652 23
Q ss_pred CCCchhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccCCCcccch
Q 013956 317 ISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSR 395 (433)
Q Consensus 317 ~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~pF~~~ss~ 395 (433)
.+++...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|++|++.||++++|+++.+. |+++|.. ++
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 308 (351)
T PF10250_consen 231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQ 308 (351)
T ss_dssp GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S-
T ss_pred cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cc
Confidence 35777889999999999999999999999999999999999999999999999999999999999999 9999976 89
Q ss_pred hhhhhhhhhcCCceeeecCCCchHHHhhcccccc
Q 013956 396 MAALDFIVCDESDIFVTNNNGNMAKILAGRRYTC 429 (433)
Q Consensus 396 ~AALDyiVc~~SDvFV~t~~Gnma~~v~G~Rr~~ 429 (433)
+|+||++||++||+||+|..++|+..|.++|+|.
T Consensus 309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~ 342 (351)
T PF10250_consen 309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYR 342 (351)
T ss_dssp -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHS
T ss_pred hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcC
Confidence 9999999999999999999888999999999885
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00018 Score=72.32 Aligned_cols=281 Identities=20% Similarity=0.250 Sum_probs=145.6
Q ss_pred CCCCcEEEEE-eCCChhhHHHHHHHHHHHHHHhCCcEEeccCCC---CccccCCCCCcccccHHH------------HHH
Q 013956 110 THSNRYLAIV-TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQ---KSFWKDASDFSEIFDVDR------------FIS 173 (433)
Q Consensus 110 ~~snGYl~V~-~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~---~s~W~D~S~F~dIFDvdh------------FI~ 173 (433)
...||||+.- |-|-+.+|-....-..+.|+.||.|||+|..-. -.+-+-.-.|...|.++- |+.
T Consensus 26 ~DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~ 105 (386)
T KOG3849|consen 26 WDPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMK 105 (386)
T ss_pred CCCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHH
Confidence 4579998876 999999999999999999999999999996433 122111237888887753 444
Q ss_pred Hcccccee-----c-------ccCCccc---cCCCCCccccCCCCC-------ChHHH------HHhh---hHhh-----
Q 013956 174 VLSKDVKI-----I-------KQIPRKG---GKSLTPYHMRVPRKC-------NEKCY------QNRV---LPVL----- 217 (433)
Q Consensus 174 sL~~dVrI-----V-------k~LP~~~---~~~~~~~~~~~p~~~-------s~~yY------~~~i---lP~l----- 217 (433)
-|..+.=. . ..-|++- .+-.+|+ =|.|- .-+|| +++. ...+
T Consensus 106 klapthwp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPF---GPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~ 182 (386)
T KOG3849|consen 106 KLAPTHWPGTPRVAICDKSAAQRSPDKPGCHSKEGNPF---GPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPS 182 (386)
T ss_pred HhCcccCCCCcceeeeehhhhccCCCCCCCcccCCCCC---CCchhheEeeeeccccccccccchhhcchHHHHHhhCCc
Confidence 44333100 0 0001110 0000110 01110 01111 1111 1111
Q ss_pred hhcceEEEeccccccccc-CchhhhhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcccCC
Q 013956 218 LKRHAVQLSKFDYRLANK-LDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYG 296 (433)
Q Consensus 218 ~k~~VI~l~~~~~rLa~~-lp~eiQrLRCrvnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC~~g 296 (433)
++|-|+.|++.-....-. ---.+||- ||.+.+|.+.|++.+.-- ..+||+++|||--.||+-- |.+-
T Consensus 183 eeyPVLAf~gAPA~FPv~~e~~~lQkY--------l~WS~r~~e~~k~fI~a~--L~rpfvgiHLRng~DWvra--Cehi 250 (386)
T KOG3849|consen 183 EEYPVLAFSGAPAPFPVKGEVWSLQKY--------LRWSSRITEQAKKFISAN--LARPFVGIHLRNGADWVRA--CEHI 250 (386)
T ss_pred ccCceeeecCCCCCCccccccccHHHH--------HHHHHHHHHHHHHHHHHh--cCcceeEEEeecCchHHHH--HHHh
Confidence 234566665532211100 00135654 788999999999876442 2469999999999999865 7653
Q ss_pred CChhHHHHHHHHHHHhhhhcCCCchhhhccCCCCCCHHHHH----HHHHHhCCCCcceEEEEeccccCcccchhhHH-hh
Q 013956 297 GGDKERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLEVG----LMLRALGYGSDVHIYVASGEVYGGEETLAPLK-AL 371 (433)
Q Consensus 297 ~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPLtPeEvg----l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~-~~ 371 (433)
-...-+- |=+--+ -+..-+....-....|-=+-+|+- +-.+.+| .-..+|+|+.. +.-+..|. ++
T Consensus 251 kd~~~~h-lfASpQ---ClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs----~hmi~Eln~aL 320 (386)
T KOG3849|consen 251 KDTTNRH-LFASPQ---CLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDS----DHMIDELNEAL 320 (386)
T ss_pred cccCCCc-cccChh---hccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccc----hhhhHHHHHhh
Confidence 2210000 000000 000000000011224533334432 2333444 33459999876 33344443 34
Q ss_pred CCCcccccccccccccCCCcccchhhhhhhhhhcCCceeeecCCCchHHHhhccc
Q 013956 372 FPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRR 426 (433)
Q Consensus 372 FPnl~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDvFV~t~~Gnma~~v~G~R 426 (433)
+|-=+.-. .|+| --+-+|..|.-+||-||+|--++|+.+|.-.|
T Consensus 321 ~~~~i~vh-----~l~p------dd~y~dLaIlGqadhFiGNCvSsfsafvKRER 364 (386)
T KOG3849|consen 321 KPYEIEVH-----RLEP------DDMYTDLAILGQADHFIGNCVSSFSAFVKRER 364 (386)
T ss_pred cccceeEE-----ecCc------ccchhhhhhhcccchhhhhhHHHHHHHHhhhh
Confidence 43211111 3333 34678999999999999998888877664433
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.19 E-value=0.006 Score=62.17 Aligned_cols=254 Identities=18% Similarity=0.255 Sum_probs=121.4
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccCC----CCCcccccHHHHHHHcc--ccceecccCC
Q 013956 113 NRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDA----SDFSEIFDVDRFISVLS--KDVKIIKQIP 186 (433)
Q Consensus 113 nGYl~V~~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D~----S~F~dIFDvdhFI~sL~--~dVrIVk~LP 186 (433)
+.|++.+--+|+|.-=-+++-|-.+|+-.|.||||- |+++ ..|...|++ |-+-.+ ..|+|+-+=+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 579999999999999999999999999999999995 7775 366666654 444433 2344441111
Q ss_pred ccccCCCCCccccCCCCCC-hH---------HHH---HhhhHhhhh------cceEEEecccccccccCchhhhhhhhhc
Q 013956 187 RKGGKSLTPYHMRVPRKCN-EK---------CYQ---NRVLPVLLK------RHAVQLSKFDYRLANKLDTDLQKLRCRV 247 (433)
Q Consensus 187 ~~~~~~~~~~~~~~p~~~s-~~---------yY~---~~ilP~l~k------~~VI~l~~~~~rLa~~lp~eiQrLRCrv 247 (433)
+.....+-. -.|.||. |. +.. +++--++.- ..||...-... .=..++. ||-
T Consensus 73 --i~~~~~~g~-~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~----~c~~~ae--R~i- 142 (321)
T PF05830_consen 73 --INQFSFPGP-FFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMW----RCDEEAE--REI- 142 (321)
T ss_dssp --GGT----SS-EESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TT----SS-HHHH--HHH-
T ss_pred --hhhhcCCCC-cChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCC----cchhHHH--HHH-
Confidence 100000000 0233332 11 111 112222221 23444332211 1123333 333
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEeccc--hhhhhhhcccCCCChhHHHHHHHHHHHhhhhcCCCchhhhc
Q 013956 248 NYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFE--PDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERR 325 (433)
Q Consensus 248 nf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E--~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~ 325 (433)
|..|+-+++|++..+.+.+.-=. +..=|++|.|.= +|.+.+ +|++ .+++.-|.++.
T Consensus 143 -f~slkpR~eIqarID~iy~ehf~-g~~~IGVHVRhGngeD~~~h-~~~~---~D~e~~L~~V~---------------- 200 (321)
T PF05830_consen 143 -FSSLKPRPEIQARIDAIYREHFA-GYSVIGVHVRHGNGEDIMDH-APYW---ADEERALRQVC---------------- 200 (321)
T ss_dssp -HHHS-B-HHHHHHHHHHHHHHTT-TSEEEEEEE-------------------HHHHHHHHHHH----------------
T ss_pred -HHhCCCCHHHHHHHHHHHHHHcC-CCceEEEEEeccCCcchhcc-Cccc---cCchHHHHHHH----------------
Confidence 88999999999999887755422 346899999931 122222 2222 11111111111
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccCCCc-----ccchhhhh
Q 013956 326 HGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSS-----FSSRMAAL 399 (433)
Q Consensus 326 ~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~pF~~-----~ss~~AAL 399 (433)
.....++++-...++.|+||+-. .+.++-+++.||.+++-++=... .-.+..+ ..-..|-+
T Consensus 201 ---------~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALI 267 (321)
T PF05830_consen 201 ---------TAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALI 267 (321)
T ss_dssp ---------HHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHH
T ss_pred ---------HHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHH
Confidence 01122344555678899999998 67899999999999887554433 2222221 12236889
Q ss_pred hhhhhcCCceee-ecCCCchHH
Q 013956 400 DFIVCDESDIFV-TNNNGNMAK 420 (433)
Q Consensus 400 DyiVc~~SDvFV-~t~~Gnma~ 420 (433)
|-+..+.+|+-| .+-.+.|.+
T Consensus 268 DM~LLSrCD~LIr~~ptS~Fsr 289 (321)
T PF05830_consen 268 DMYLLSRCDYLIRFPPTSAFSR 289 (321)
T ss_dssp HHHHHTTSSEEEEESTT-GGGH
T ss_pred HHHHHHhCCeEEEcCCCchhhh
Confidence 999999999999 566666644
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.52 E-value=25 Score=38.06 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=76.0
Q ss_pred ccccchHHHHHHHHHHHHHHhcC--CceEEEEeccchhhhhhhcccCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCC
Q 013956 251 ALSFTDSIQKMGEKLVHQMRMKG--KHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGK 328 (433)
Q Consensus 251 ALrF~p~I~~lg~~lV~RmR~~s--~pfiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~ 328 (433)
-+||+|-.++ +|-+-||+.+ +|-|++|.|-. |-+ |+++.=-.++.|=. |-+
T Consensus 340 L~Rpqp~t~~---~l~~a~k~lg~~~PivGvhvRRT-DKV--------GTEAAfH~~eEYM~-~vE-------------- 392 (580)
T KOG3705|consen 340 LMRPQPATQE---KLDKALKSLGLDKPIVGVHVRRT-DKV--------GTEAAFHALEEYME-WVE-------------- 392 (580)
T ss_pred HhCCChhhHH---HHHHHHHhCCCCCceeeEEEEec-ccc--------cchhhhhhHHHHHH-HHH--------------
Confidence 5888888776 4555666554 79999999875 222 22222111222221 211
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccC-------CCcccchhhhhh
Q 013956 329 CPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEP-------FSSFSSRMAALD 400 (433)
Q Consensus 329 CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~p-------F~~~ss~~AALD 400 (433)
+--.+|..=|=+-..+||||+.+ -..+..-+.-|||.. +-.+ |.+. |...|-.---+|
T Consensus 393 ------~~f~~le~rg~~~~rRiflAsDD----p~vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvIlD 458 (580)
T KOG3705|consen 393 ------IWFKVLEKRGKPLERRIFLASDD----PTVVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVILD 458 (580)
T ss_pred ------HHHHHHHHhCCchhheEEEecCC----chhchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhheeee
Confidence 11112233344556689999998 345566688899862 2233 4432 222233345679
Q ss_pred hhhhcCCceeeecCCCchHH
Q 013956 401 FIVCDESDIFVTNNNGNMAK 420 (433)
Q Consensus 401 yiVc~~SDvFV~t~~Gnma~ 420 (433)
..+.+.+|..|.|.++..-|
T Consensus 459 Ih~LS~~d~LVCTFSSQVCR 478 (580)
T KOG3705|consen 459 IHILSKVDYLVCTFSSQVCR 478 (580)
T ss_pred eeeecccceEEEechHHHHH
Confidence 99999999999999987544
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=58.55 E-value=5.4 Score=33.31 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccCCCcccchhhhhhh
Q 013956 330 PLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSRMAALDF 401 (433)
Q Consensus 330 PLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~pF~~~ss~~AALDy 401 (433)
++|-.+++-+|+-+.|++ .+|..++-++|++++++.--.- +.-.|. +++..|-+|
T Consensus 39 ~~T~~Qv~~il~~f~fd~---------------~kl~~lk~l~p~i~D~~n~~~i~~~f~f~--s~k~~~~~~ 94 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN---------------DKLKALKLLYPYIVDPQNYYTIIDAFSFS--SDKDKAREI 94 (95)
T ss_pred ceeHHHHHHHHHHcCCCH---------------HHHHHHHHHhhhccCHHHHHHHHHHhcCc--ccHHHHHHh
Confidence 499999999999999987 3599999999999999754443 444454 555555544
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=53.35 E-value=28 Score=31.43 Aligned_cols=99 Identities=10% Similarity=-0.076 Sum_probs=56.7
Q ss_pred hccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhh----hcccCCCChhHHH--HHHHHHHHhhhhcCCC
Q 013956 246 RVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAF----SGCYYGGGDKERK--ELGAIRKRWKTLHISN 319 (433)
Q Consensus 246 rvnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAf----sgC~~g~~~~E~~--eL~~~R~~wk~~~~~~ 319 (433)
-++..+|++-++..+.-+.+.+.|+. +|.++-++...+...+.. .-|.......+.- ...++++-|..
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLkp-GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~s----- 121 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLKP-GSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYS----- 121 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcCc-CeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHH-----
Confidence 34455778778888888888888876 578887777544321110 0111101000000 00111111110
Q ss_pred chhhhccCCCCCCHHHHHHHHHHhCCCCcceEEEEecc
Q 013956 320 PDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGE 357 (433)
Q Consensus 320 ~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~ge 357 (433)
-.. +++|+|...+|+..||.+-+.-+++.|-
T Consensus 122 ------i~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 122 ------ING-YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred ------HHH-CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 011 5899999999999999998888887765
No 7
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=43.86 E-value=27 Score=31.11 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013956 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (433)
Q Consensus 328 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 356 (433)
.|||||||+...|+++--+. ...||..+
T Consensus 14 qC~l~ke~~l~~L~~l~~~~-~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTPS-NKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---SS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcc-CceEEEee
Confidence 69999999999999997654 56676554
No 8
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=36.86 E-value=26 Score=28.02 Aligned_cols=16 Identities=44% Similarity=0.700 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHh
Q 013956 327 GKCPLTPLEVGLMLRAL 343 (433)
Q Consensus 327 G~CPLtPeEvgl~L~al 343 (433)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 346 9999999999875
No 9
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.98 E-value=48 Score=25.80 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.0
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCC
Q 013956 323 ERRHGKCPLTPLEVGLMLRALGYGS 347 (433)
Q Consensus 323 ~R~~G~CPLtPeEvgl~L~alGf~~ 347 (433)
.+.-|. .++++|+.-+|+.|||+-
T Consensus 12 ~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 355665 499999999999999976
No 10
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=24.76 E-value=80 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=34.9
Q ss_pred CCHHHHH-HHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCccccccc
Q 013956 331 LTPLEVG-LMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETI 381 (433)
Q Consensus 331 LtPeEvg-l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L 381 (433)
++|--+- .+|..++ +.++.|++...+ |......|+++.|.-+.+++|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~---~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNND---GTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCcCCcCcC
Confidence 4555433 5788887 678999999887 555567889999988877654
No 11
>PRK05578 cytidine deaminase; Validated
Probab=23.45 E-value=80 Score=28.49 Aligned_cols=95 Identities=18% Similarity=0.310 Sum_probs=54.9
Q ss_pred EEEEeccchhhhhhhcccCC------CChhHHHHHHHHHHH----hhhhcCCCchhhhccCCCCCCHHHH-HHHHHHhCC
Q 013956 277 IALHLRFEPDMLAFSGCYYG------GGDKERKELGAIRKR----WKTLHISNPDKERRHGKCPLTPLEV-GLMLRALGY 345 (433)
Q Consensus 277 iALHLR~E~DMLAfsgC~~g------~~~~E~~eL~~~R~~----wk~~~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf 345 (433)
++-.+|.+ |=-.|.||.-- +.-.|+..+.++=.. .+..-++. +.. -+.+|-=. -.+|..++
T Consensus 26 Vgaa~~~~-~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv~----~~~--~~~sPCG~CRQ~l~e~~- 97 (131)
T PRK05578 26 VGAALLTD-DGRIYTGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACVG----ETG--EPLSPCGRCRQVLAEFG- 97 (131)
T ss_pred eEEEEEeC-CCCEEEEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEEe----cCC--CccCccHHHHHHHHHhC-
Confidence 67777775 44455555422 123577777665321 11111111 111 23444332 24566664
Q ss_pred CCcceEEEEeccccCcccchhhHHhhCCCcccccccc
Q 013956 346 GSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIA 382 (433)
Q Consensus 346 ~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~ 382 (433)
+.++.||+...+ |+.....|+++.|.-+++++|+
T Consensus 98 ~~~~~v~l~~~~---~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 98 GPDLLVTLVAKD---GPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred CCCcEEEEEcCC---CCEEEEEHHHhCcCcCChhhcC
Confidence 578999999877 5555688999999999988764
No 12
>PRK10556 hypothetical protein; Provisional
Probab=22.43 E-value=55 Score=28.99 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013956 331 LTPLEVGLMLRALGYGSDV 349 (433)
Q Consensus 331 LtPeEvgl~L~alGf~~~T 349 (433)
|-|.||+.+|+..||..|.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998864
No 13
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.32 E-value=1.1e+02 Score=31.01 Aligned_cols=73 Identities=29% Similarity=0.339 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCcccccccccc-cccCCCcccchhhhhhhhhhcCCceeee
Q 013956 334 LEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSRMAALDFIVCDESDIFVT 412 (433)
Q Consensus 334 eEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~pF~~~ss~~AALDyiVc~~SDvFV~ 412 (433)
.|+...|.+-| .+|.+.+|. .-++..+.+.+..++.+. |+.. .|.. ++||- ..||.||+
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k~sL~e-------~~~li----~~a~l~I~ 257 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGKTSLEE-------LAALI----AGADLVIG 257 (334)
T ss_pred HHHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCCCCHHH-------HHHHH----hcCCEEEc
Confidence 36777888888 779999887 334445566767776544 3333 3222 22222 67999999
Q ss_pred cCCCchHHHhhccc
Q 013956 413 NNNGNMAKILAGRR 426 (433)
Q Consensus 413 t~~Gnma~~v~G~R 426 (433)
+.+|-|.-+-+-++
T Consensus 258 ~DSg~~HlAaA~~~ 271 (334)
T COG0859 258 NDSGPMHLAAALGT 271 (334)
T ss_pred cCChHHHHHHHcCC
Confidence 99998765555444
No 14
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.05 E-value=57 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=17.7
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCCcc
Q 013956 323 ERRHGKCPLTPLEVGLMLRALGYGSDV 349 (433)
Q Consensus 323 ~R~~G~CPLtPeEvgl~L~alGf~~~T 349 (433)
.+.-|. .++++|+.-+|+.|||.-+.
T Consensus 12 ~~~lG~-~i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 12 NKLLGI-DISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEEE
T ss_pred HHHhCC-CCCHHHHHHHHHHCCCEEEE
Confidence 345565 49999999999999998654
No 15
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=20.99 E-value=68 Score=36.93 Aligned_cols=60 Identities=22% Similarity=0.514 Sum_probs=38.1
Q ss_pred CcceEEEEe----cc----ccCcccchhhHHhhCCCcccccccccc-cccC----------CCccc-chhhhhhhhhhcC
Q 013956 347 SDVHIYVAS----GE----VYGGEETLAPLKALFPNFYSKETIASK-ELEP----------FSSFS-SRMAALDFIVCDE 406 (433)
Q Consensus 347 ~~T~IYlA~----ge----iyGg~~~l~~L~~~FPnl~tKe~L~s~-EL~p----------F~~~s-s~~AALDyiVc~~ 406 (433)
-+..+|+|- |+ .||| +.|+-|++.||.++++..+.+. -+-| +.|-+ -+..-.+|++...
T Consensus 698 i~n~lY~a~T~ggG~dyQ~~YGG-~fLdeLq~~YP~lF~~~qiSTG~~idps~kIk~WSAKYfNGTNI~grGa~YVLkd~ 776 (809)
T PF02324_consen 698 INNTLYVANTKGGGKDYQAKYGG-AFLDELQKKYPDLFTTKQISTGVPIDPSVKIKEWSAKYFNGTNIQGRGAGYVLKDW 776 (809)
T ss_dssp TSSEEEEEEEEB-CHSHHHHHTT-TTHHHHHHH-GGGCCSEETTTSSB--TTS--SSB-GGGEEEEE--SS-TTSB-EET
T ss_pred ecceeEEEecccccHhHHHHHhH-HHHHHHHHhChHhhhccccccCCCCCccchhhhhhhhhcCCCccccCccceEeecc
Confidence 345799984 44 6888 6899999999999999999874 3332 22322 3456777777764
Q ss_pred C
Q 013956 407 S 407 (433)
Q Consensus 407 S 407 (433)
.
T Consensus 777 ~ 777 (809)
T PF02324_consen 777 A 777 (809)
T ss_dssp T
T ss_pred C
Confidence 4
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=20.94 E-value=45 Score=32.18 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=22.0
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEE
Q 013956 326 HGKCPLTPLEVGLMLRALGYGSDVHIY 352 (433)
Q Consensus 326 ~G~CPLtPeEvgl~L~alGf~~~T~IY 352 (433)
+-..|+|++|...+|+.-||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 346789999999999999999755443
No 17
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=20.26 E-value=62 Score=28.85 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013956 331 LTPLEVGLMLRALGYGSDV 349 (433)
Q Consensus 331 LtPeEvgl~L~alGf~~~T 349 (433)
|-|.||+.+|+..||..|.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998864
Done!