Query 013956
Match_columns 433
No_of_seqs 175 out of 379
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 3.7E-13 1.3E-17 136.0 15.9 287 111-427 20-377 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 2.5E-10 8.4E-15 115.2 16.5 270 111-426 6-344 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 0.0018 6.1E-08 68.4 21.8 248 113-426 145-417 (526)
4 2hhc_A NODZ, nodulation fucosy 97.7 0.0022 7.5E-08 62.3 18.0 260 112-421 3-292 (330)
5 3l32_A Phosphoprotein; antipar 34.9 18 0.0006 26.5 1.7 22 251-272 2-23 (45)
6 1l2m_A REP protein; A+B fold, 25.4 72 0.0025 27.5 4.3 28 328-356 17-44 (118)
7 2eqr_A N-COR1, N-COR, nuclear 23.0 55 0.0019 24.3 2.8 20 325-344 9-28 (61)
8 2g7j_A Putative cytoplasmic pr 20.8 41 0.0014 29.0 1.8 19 331-349 3-21 (124)
9 2fr5_A Cytidine deaminase; tet 19.7 81 0.0028 27.7 3.6 95 277-382 38-143 (146)
10 3i5g_C Myosin catalytic light 17.2 82 0.0028 26.6 3.0 19 330-348 27-45 (159)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.49 E-value=3.7e-13 Score=135.97 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=153.1
Q ss_pred CCCcEEEEEeC-C-ChhhHHHHHHHHHHHHHHhCCc----EEeccCCCCccccCC------CCCcccccHHHHHHHcccc
Q 013956 111 HSNRYLAIVTS-G-GLNQQRTGIIDAVVAARILNAT----LVIPKLDQKSFWKDA------SDFSEIFDVDRFISVLSKD 178 (433)
Q Consensus 111 ~snGYl~V~~n-G-GLNqqR~~IcDaV~vARiLNAT----LVlP~l~~~s~W~D~------S~F~dIFDvdhFI~sL~~d 178 (433)
..++||+-..| | |.|+||...-.|.+.|+.||.| ||||-...---|+-. -.|++.||++.+ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 46899998864 5 8999999999999999999999 999966543345443 269999999864 345
Q ss_pred ceec------ccC-Ccc----c-----c-C--CC---CCcccc-----CCC-CC------ChHH----------------
Q 013956 179 VKII------KQI-PRK----G-----G-K--SL---TPYHMR-----VPR-KC------NEKC---------------- 208 (433)
Q Consensus 179 VrIV------k~L-P~~----~-----~-~--~~---~~~~~~-----~p~-~~------s~~y---------------- 208 (433)
|+|| +++ |.. + . . .. .....+ .+. .. .+.|
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 5554 222 100 0 0 0 00 000000 000 00 0001
Q ss_pred -HHHhhhHhhhhcc---eEEEecccccccccC-chhhhhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEecc
Q 013956 209 -YQNRVLPVLLKRH---AVQLSKFDYRLANKL-DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRF 283 (433)
Q Consensus 209 -Y~~~ilP~l~k~~---VI~l~~~~~rLa~~l-p~eiQrLRCrvnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~ 283 (433)
....+.|.+.+.. -+-+..+...|.+.. ..+...+| ..|+|++.|.++|++.++..-. ++|+++|+|.
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~ 248 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRIPF 248 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeeccc
Confidence 0011223332221 112222222233221 12322332 3799999999999998876542 3666666666
Q ss_pred chhhhhhhcccCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCC-CCCHHH---HHHHHHHhCCCCcceEEEEecccc
Q 013956 284 EPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKC-PLTPLE---VGLMLRALGYGSDVHIYVASGEVY 359 (433)
Q Consensus 284 E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~C-PLtPeE---vgl~L~alGf~~~T~IYlA~geiy 359 (433)
+.|+... |.......-. .....|.-..+-......| |-.++- +..+++.. +-+.||||+-+
T Consensus 249 ~~dw~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~---~~~~VyiATD~-- 313 (408)
T 4ap5_A 249 QEDWMKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTH---RLDKVFVATDA-- 313 (408)
T ss_dssp CSSGGGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHH---TCSCEEEEECC--
T ss_pred chhHhhh--hcccccccCC--------CccccccccccchhhhhccCCCHHHHHHHHHHHHHhc---CCCEEEEeCCC--
Confidence 6665543 3221110000 0000000000000111122 222222 22333333 33459999876
Q ss_pred CcccchhhHHhhCCCcccccccccccccCCCcccchhhhhhhhhhcCCceeeecCCCchHHHhhcccc
Q 013956 360 GGEETLAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRRY 427 (433)
Q Consensus 360 Gg~~~l~~L~~~FPnl~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDvFV~t~~Gnma~~v~G~Rr 427 (433)
.+..+..|++.+|.++.-..-.. ++.++ .....|.||-+||.+||+||+|..++|+..|.=.|-
T Consensus 314 -~~~~~~~l~~~~~~~~~~~~~~~-~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~ 377 (408)
T 4ap5_A 314 -VRKEYEELKKLLPEMVRFEPTWE-ELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEERE 377 (408)
T ss_dssp -CHHHHHHHHHHCTTEECCCCCHH-HHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHH
T ss_pred -chhHHHHHHHhCCCcEEecCcch-hhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHH
Confidence 45557889999987654322111 44443 234679999999999999999999999877765553
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.21 E-value=2.5e-10 Score=115.15 Aligned_cols=270 Identities=17% Similarity=0.274 Sum_probs=152.6
Q ss_pred CCCcEEEEE-eCCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccCCC---CCcccccHHH------------HHHH
Q 013956 111 HSNRYLAIV-TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDAS---DFSEIFDVDR------------FISV 174 (433)
Q Consensus 111 ~snGYl~V~-~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D~S---~F~dIFDvdh------------FI~s 174 (433)
.+||||+-= |-|-+.||-....-+.+.|+.||.|||||-+-.-.. . .+ .|++-|+++. |++.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~-~~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~ 83 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-P-ETKMIPFEFLFQVGTVAKYTRVVTMQEFTKK 83 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-S-SCEEECHHHHBCHHHHTTTSCEECHHHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-C-cccccchhheeecchhhhhceeeeHHHHHHH
Confidence 469999875 999999999999999999999999999997653222 1 13 5888888765 3333
Q ss_pred ccccc-------------ee-------cccCCccccCCCCCc-------cccC-------C--C--CCChHHHHHhhhHh
Q 013956 175 LSKDV-------------KI-------IKQIPRKGGKSLTPY-------HMRV-------P--R--KCNEKCYQNRVLPV 216 (433)
Q Consensus 175 L~~dV-------------rI-------Vk~LP~~~~~~~~~~-------~~~~-------p--~--~~s~~yY~~~ilP~ 216 (433)
|...| +- -+.+|..- .+|+ .+.- | . .-+...|.++=...
T Consensus 84 lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~---GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 84 IMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKE---GNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp THHHHSCGGGCEEEESSCBC-------CCBCCTTS---STTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred hccccCCcccceEeeccccccccCCCCCCCCCCCC---CCCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 33111 00 01122110 0110 0000 0 0 00001111111111
Q ss_pred --hhhcceEEEecccccccc-cCchhhhhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcc
Q 013956 217 --LLKRHAVQLSKFDYRLAN-KLDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGC 293 (433)
Q Consensus 217 --l~k~~VI~l~~~~~rLa~-~lp~eiQrLRCrvnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC 293 (433)
-.+|-|+.|++.-..-.- .-...+|| -|+++++|.+.|++.++.-- .+||||+|||-=.|+.-. |
T Consensus 161 ~p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~DW~~a--C 228 (362)
T 3zy2_A 161 FPSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDADWVRV--C 228 (362)
T ss_dssp SCTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHHHHHH--H
T ss_pred CCcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCcHHHH--H
Confidence 125577777764222110 00123444 48999999999999887743 369999999999999876 8
Q ss_pred cCCCChhHHHHHHHHHHHhhhhcCCCch---hhhccC-----CCCCCHHH----HHHHHHHhCCCCcceEEEEeccccCc
Q 013956 294 YYGGGDKERKELGAIRKRWKTLHISNPD---KERRHG-----KCPLTPLE----VGLMLRALGYGSDVHIYVASGEVYGG 361 (433)
Q Consensus 294 ~~g~~~~E~~eL~~~R~~wk~~~~~~~~---~~R~~G-----~CPLtPeE----vgl~L~alGf~~~T~IYlA~geiyGg 361 (433)
.+.-.. + .. . ...++. -....| .|==+.++ +..+++.++.+ .||||+-.
T Consensus 229 ~hlk~~-~------~~----~-lfaSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa---- 289 (362)
T 3zy2_A 229 EHIDTT-T------NR----P-LFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAK---SVFVASDK---- 289 (362)
T ss_dssp HTCCTT-T------CC----C-CTTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS----
T ss_pred hhhccc-c------Cc----c-cccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC----
Confidence 762210 0 00 0 000000 000111 23223333 44556666644 59999976
Q ss_pred ccchhhHHhhCCCcccccccccccccCCCcccchhhhhhhhhhcCCceeeecCCCchHHHhhccc
Q 013956 362 EETLAPLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRR 426 (433)
Q Consensus 362 ~~~l~~L~~~FPnl~tKe~L~s~EL~pF~~~ss~~AALDyiVc~~SDvFV~t~~Gnma~~v~G~R 426 (433)
...++-|+++|+..-. .+ . -+.| -.|+||.+||.+||+||+|..++|.-.|.=.|
T Consensus 290 ~~~~~ELk~~L~~~~v--~v-v-~~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rER 344 (362)
T 3zy2_A 290 DHMIDEINEALKPYEI--EA-H-RQEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRER 344 (362)
T ss_dssp CCCHHHHHHHHGGGTC--CE-E-CCSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCc--eE-E-EeCC------chhHHHHHHHHhCCEeecCccccccHHHHHHH
Confidence 4467888888764210 01 1 1112 17999999999999999999999866554433
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.83 E-value=0.0018 Score=68.41 Aligned_cols=248 Identities=15% Similarity=0.182 Sum_probs=138.7
Q ss_pred CcEEEEEe--CCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccCC-CCCcccccHHHHHHHccccceecccCCccc
Q 013956 113 NRYLAIVT--SGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDA-SDFSEIFDVDRFISVLSKDVKIIKQIPRKG 189 (433)
Q Consensus 113 nGYl~V~~--nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D~-S~F~dIFDvdhFI~sL~~dVrIVk~LP~~~ 189 (433)
..||+... ..|+..+-..++-|..+|..+|.|||+-.=. |.-. ..|+++|.. +...+.- . |..
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P------~s~~C~~--~-~~~- 210 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP------VSETCTD--R-SGI- 210 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC------SCSSCCC--C-CCS-
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC------cCccccC--C-Ccc-
Confidence 47898886 5799999999999999999999999995432 3322 467777774 1111110 0 100
Q ss_pred cCCCCCccccCCCCCChHHHHHhhhHhhhhcceEEEecccc--c---ccc-cCchh----hhhhhh--------hccccc
Q 013956 190 GKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDY--R---LAN-KLDTD----LQKLRC--------RVNYHA 251 (433)
Q Consensus 190 ~~~~~~~~~~~p~~~s~~yY~~~ilP~l~k~~VI~l~~~~~--r---La~-~lp~e----iQrLRC--------rvnf~A 251 (433)
....|-.... -..+.||.+...++ + ... .+|.+ ++++.- .+.-.-
T Consensus 211 ---------~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl 273 (526)
T 2de0_X 211 ---------STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYL 273 (526)
T ss_dssp ---------CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ---------ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHH
Confidence 0000111000 12345554433221 1 111 33433 333321 011124
Q ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcccCCCChhHHHHHHHHHHHhhhhcCCCchhhhccCCCCC
Q 013956 252 LSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPL 331 (433)
Q Consensus 252 LrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~G~CPL 331 (433)
+|++++|++..+++.+.+.- ++|.|++|.|-= |-++.. ....+. .+-+..+.+.+.
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~~-~~Y~~~v~~~~~------------------ 329 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHPI-EEYMVHVEEHFQ------------------ 329 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCSH-HHHHHHHHHHHH------------------
T ss_pred cCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCCH-HHHHHHHHHHHH------------------
Confidence 89999999999888888754 589999999964 443211 111111 111111111111
Q ss_pred CHHHHHHHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCc--ccccccccc-cc-cCCCcccchhhhhhhhhhcCC
Q 013956 332 TPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNF--YSKETIASK-EL-EPFSSFSSRMAALDFIVCDES 407 (433)
Q Consensus 332 tPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl--~tKe~L~s~-EL-~pF~~~ss~~AALDyiVc~~S 407 (433)
.|+.......+.||||+.+ ...++.+++.||+. ++-...... .+ ..+...+-..+.+|.++.++|
T Consensus 330 -------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~c 398 (526)
T 2de0_X 330 -------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQA 398 (526)
T ss_dssp -------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHS
T ss_pred -------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcC
Confidence 1222245778899999998 56678888889985 322211111 11 111112235689999999999
Q ss_pred ceeeecCCCchHHHhhccc
Q 013956 408 DIFVTNNNGNMAKILAGRR 426 (433)
Q Consensus 408 DvFV~t~~Gnma~~v~G~R 426 (433)
|+||+|.++|+++++...+
T Consensus 399 d~~Vgt~sS~~srla~~l~ 417 (526)
T 2de0_X 399 DFLVCTFSSQVCRVAYEIM 417 (526)
T ss_dssp SEEEECTTSHHHHHHHHHH
T ss_pred CeeecCCCCHHHHHHHHHh
Confidence 9999999999988766543
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.66 E-value=0.0022 Score=62.35 Aligned_cols=260 Identities=14% Similarity=0.146 Sum_probs=123.6
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccCCCCCcccccHHHHHHHccc--cceeccc-CCcc
Q 013956 112 SNRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSK--DVKIIKQ-IPRK 188 (433)
Q Consensus 112 snGYl~V~~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D~S~F~dIFDvdhFI~sL~~--dVrIVk~-LP~~ 188 (433)
+.+||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| +..|. .... ...+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4579999999999999999999999999999998886444 23321 2355556 22232 1110 0000000 0100
Q ss_pred ccCCCCCccccCCCCCC-h---HHH--HHhhhH-------hhh--hc-ceEEEecccccccccCchhhhhhhhhcccccc
Q 013956 189 GGKSLTPYHMRVPRKCN-E---KCY--QNRVLP-------VLL--KR-HAVQLSKFDYRLANKLDTDLQKLRCRVNYHAL 252 (433)
Q Consensus 189 ~~~~~~~~~~~~p~~~s-~---~yY--~~~ilP-------~l~--k~-~VI~l~~~~~rLa~~lp~eiQrLRCrvnf~AL 252 (433)
. +. ..+. .|..+. . ..| .+++.| ++. .+ ....+.+. ..+-...-.+ .-..-|.-|
T Consensus 78 ~-~~-~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~w~~~~~----~~~~i~~yl 148 (330)
T 2hhc_A 78 L-SF-PGPF--FPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACLMWRCSEE----AERLIFRNI 148 (330)
T ss_dssp C-CC-CSSE--ESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCCTTSSCHH----HHHHHHHHS
T ss_pred c-cC-CCCc--CchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-cccccchhhh----hHHHHHhcC
Confidence 0 00 0000 000000 0 001 122221 111 11 00112210 0010011111 112224678
Q ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcccCCCChhHH-HHHHHHHHHhhhhcCCCchhhhccCCCCC
Q 013956 253 SFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKER-KELGAIRKRWKTLHISNPDKERRHGKCPL 331 (433)
Q Consensus 253 rF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC~~g~~~~E~-~eL~~~R~~wk~~~~~~~~~~R~~G~CPL 331 (433)
+++++|++..+++.+.+-. +.++|++|.|.=.+. ..|.++..-++. .-++.+.+
T Consensus 149 ~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~--------------------- 203 (330)
T 2hhc_A 149 KLRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCM--------------------- 203 (330)
T ss_dssp CBCHHHHHHHHHHHHHHTT-TSEEEEEEECC---------------CHHHHHHHHHHHH---------------------
T ss_pred CccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHH---------------------
Confidence 9999999998888765322 369999999964321 123221100010 00111111
Q ss_pred CHHHHHHHHHHh-C-CC-CcceEEEEeccccCcccchhhHHhhCCCccccc-ccccc---ccc-CCCc-ccchhhhhhhh
Q 013956 332 TPLEVGLMLRAL-G-YG-SDVHIYVASGEVYGGEETLAPLKALFPNFYSKE-TIASK---ELE-PFSS-FSSRMAALDFI 402 (433)
Q Consensus 332 tPeEvgl~L~al-G-f~-~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe-~L~s~---EL~-pF~~-~ss~~AALDyi 402 (433)
-++.+ . .+ .++.||||+-+. ..++.+++.||++.+-. .+... .+. +..+ ...+.+.+|.+
T Consensus 204 -------~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~ 272 (330)
T 2hhc_A 204 -------AIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMY 272 (330)
T ss_dssp -------HHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHH
Confidence 01110 0 12 467899999984 46778999999843321 11110 000 0000 12456889999
Q ss_pred hhcCCceee-ecCCCchHHH
Q 013956 403 VCDESDIFV-TNNNGNMAKI 421 (433)
Q Consensus 403 Vc~~SDvFV-~t~~Gnma~~ 421 (433)
..+.||.+| .+..++|+-.
T Consensus 273 LLS~cd~~I~~~~~STFs~~ 292 (330)
T 2hhc_A 273 LLARCATVIRFPPTSAFTRY 292 (330)
T ss_dssp HHTTCSEEEEESTTCGGGHH
T ss_pred HHHcCCeeEECCCCCCHHHH
Confidence 999999999 5446666544
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=34.93 E-value=18 Score=26.49 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.4
Q ss_pred ccccchHHHHHHHHHHHHHHhc
Q 013956 251 ALSFTDSIQKMGEKLVHQMRMK 272 (433)
Q Consensus 251 ALrF~p~I~~lg~~lV~RmR~~ 272 (433)
++-|+.=+.++|.++|.||++-
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4557778999999999999873
No 6
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=25.36 E-value=72 Score=27.45 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013956 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (433)
Q Consensus 328 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 356 (433)
.||||+||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 699999999999999986654 4454443
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.02 E-value=55 Score=24.31 Aligned_cols=20 Identities=15% Similarity=-0.079 Sum_probs=17.2
Q ss_pred ccCCCCCCHHHHHHHHHHhC
Q 013956 325 RHGKCPLTPLEVGLMLRALG 344 (433)
Q Consensus 325 ~~G~CPLtPeEvgl~L~alG 344 (433)
++...|.|+||..+|++++-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHH
Confidence 35678999999999999985
No 8
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=20.81 E-value=41 Score=29.05 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013956 331 LTPLEVGLMLRALGYGSDV 349 (433)
Q Consensus 331 LtPeEvgl~L~alGf~~~T 349 (433)
|-|.||+.+|+..||..|.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998764
No 9
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=19.69 E-value=81 Score=27.68 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=53.9
Q ss_pred EEEEeccchhhhhhhcccCCCCh---hHHHHHHHHHHHhhhh-----c-CCCchhhhccCCCC-CCHHHH-HHHHHHhCC
Q 013956 277 IALHLRFEPDMLAFSGCYYGGGD---KERKELGAIRKRWKTL-----H-ISNPDKERRHGKCP-LTPLEV-GLMLRALGY 345 (433)
Q Consensus 277 iALHLR~E~DMLAfsgC~~g~~~---~E~~eL~~~R~~wk~~-----~-~~~~~~~R~~G~CP-LtPeEv-gl~L~alGf 345 (433)
++--++.+.. -.|+||.--..+ .-..|..++++.+..- . .+... .+ -| ++|=-. --+|.-+|
T Consensus 38 VGAal~~~dG-~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~----~~-~~~~~PCG~Crq~l~E~~- 110 (146)
T 2fr5_A 38 VGAALLTGDG-RIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSD----LQ-EEFISPCGACRQVMREFG- 110 (146)
T ss_dssp EEEEEEETTS-CEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEES----CS-SSCCCCCHHHHHHHHHTC-
T ss_pred EEEEEEeCCC-cEEEEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeC----CC-CcccCCCHHHHHHHHHhC-
Confidence 6666777644 455788654322 1234445555543221 0 01111 01 12 344222 24667777
Q ss_pred CCcceEEEEeccccCcccchhhHHhhCCCcccccccc
Q 013956 346 GSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIA 382 (433)
Q Consensus 346 ~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~ 382 (433)
.++.||++..+ |+.....|.++.|.-+++++|.
T Consensus 111 -~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l~ 143 (146)
T 2fr5_A 111 -TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 143 (146)
T ss_dssp -SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred -CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHHh
Confidence 78999999876 5545578999999998888773
No 10
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=17.16 E-value=82 Score=26.56 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 013956 330 PLTPLEVGLMLRALGYGSD 348 (433)
Q Consensus 330 PLtPeEvgl~L~alGf~~~ 348 (433)
-++.+|.+.+|++||+..+
T Consensus 27 ~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 27 DVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CEEGGGHHHHHHHTTCCCC
T ss_pred eECHHHHHHHHHHcCCCCC
Confidence 3889999999999998653
Done!