Query 013956
Match_columns 433
No_of_seqs 175 out of 379
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 20:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013956.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013956hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 36.4 17 0.0012 29.4 4.3 28 328-356 17-44 (118)
2 d2ihoa2 d.3.1.18 (A:156-293) A 32.4 2.8 0.0002 34.7 -1.3 35 145-179 32-71 (138)
3 d1oqya2 a.5.2.1 (A:317-360) DN 31.3 3.9 0.00028 28.2 -0.5 26 332-357 1-30 (44)
4 d1vjna_ d.157.1.4 (A:) Hypothe 26.6 33 0.0024 28.8 4.8 54 115-177 130-184 (209)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 22.8 18 0.0013 28.7 2.0 19 331-349 3-21 (112)
6 d2gh1a1 c.66.1.49 (A:13-293) M 22.6 22 0.0016 31.0 2.9 91 247-347 99-189 (281)
7 d2fr5a1 c.97.1.1 (A:11-146) mo 20.8 28 0.0021 28.1 3.0 99 276-383 27-134 (136)
8 d1f54a_ a.39.1.5 (A:) Calmodul 19.7 51 0.0037 22.9 3.9 18 331-348 27-44 (77)
9 d1jjcb2 a.6.1.1 (B:400-474) Do 17.3 33 0.0024 24.8 2.4 24 323-347 13-36 (75)
10 d1uwza_ c.97.1.1 (A:) mono-dom 16.8 50 0.0037 26.2 3.6 40 338-381 91-130 (130)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=36.44 E-value=17 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEEEec
Q 013956 328 KCPLTPLEVGLMLRALGYGSDVHIYVASG 356 (433)
Q Consensus 328 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 356 (433)
+|||||||+...|+.|==+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999999776655 455543
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=32.39 E-value=2.8 Score=34.74 Aligned_cols=35 Identities=31% Similarity=0.586 Sum_probs=29.8
Q ss_pred EEeccCCCCccccCCC-----CCcccccHHHHHHHccccc
Q 013956 145 LVIPKLDQKSFWKDAS-----DFSEIFDVDRFISVLSKDV 179 (433)
Q Consensus 145 LVlP~l~~~s~W~D~S-----~F~dIFDvdhFI~sL~~dV 179 (433)
||||.-.-++.|+++- -=++|||-|.|--..+..|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 8999999999999972 5579999999988777654
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.34 E-value=3.9 Score=28.17 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=18.8
Q ss_pred CHHHHH--HHHHHhCCCCcc--eEEEEecc
Q 013956 332 TPLEVG--LMLRALGYGSDV--HIYVASGE 357 (433)
Q Consensus 332 tPeEvg--l~L~alGf~~~T--~IYlA~ge 357 (433)
||+|.. .=|.+|||+++. ++|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 555544 348899999987 46887766
No 4
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=26.55 E-value=33 Score=28.83 Aligned_cols=54 Identities=28% Similarity=0.491 Sum_probs=34.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCcEEeccCCCCccccC-CCCCcccccHHHHHHHccc
Q 013956 115 YLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKD-ASDFSEIFDVDRFISVLSK 177 (433)
Q Consensus 115 Yl~V~~nGGLNqqR~~IcDaV~vARiLNATLVlP~l~~~s~W~D-~S~F~dIFDvdhFI~sL~~ 177 (433)
.+++.+.|.. ...--+|+.+|+.|++-.|||- -|+. ...| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-----H~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-----HYKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-----SCCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-----ccCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 2346789999999999999994 2432 2233 34557888887664
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=22.76 E-value=18 Score=28.67 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhCCCCcc
Q 013956 331 LTPLEVGLMLRALGYGSDV 349 (433)
Q Consensus 331 LtPeEvgl~L~alGf~~~T 349 (433)
|-|.||+.+|+..||..|.
T Consensus 3 LRPDEVArVLe~aGF~~d~ 21 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV 21 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998763
No 6
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=22.62 E-value=22 Score=31.02 Aligned_cols=91 Identities=20% Similarity=0.341 Sum_probs=54.9
Q ss_pred ccccccccchHHHHHHHHHHHHHHhcCCceEEEEeccchhhhhhhcccCCCChhHHHHHHHHHHHhhhhcCCCchhhhcc
Q 013956 247 VNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRH 326 (433)
Q Consensus 247 vnf~ALrF~p~I~~lg~~lV~RmR~~s~pfiALHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~wk~~~~~~~~~~R~~ 326 (433)
++.++|...++.+++-+++.+.|+. +|.++....-...++..+ ...+....+...+...++.|. ...+..
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 168 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLFE-------SDTQRN 168 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHHH-------HHHHTT
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHHH-------HHHHHc
Confidence 4456666677777777777777766 478887665555555554 233333222222222222221 123456
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 013956 327 GKCPLTPLEVGLMLRALGYGS 347 (433)
Q Consensus 327 G~CPLtPeEvgl~L~alGf~~ 347 (433)
|..|....++..+|+..||.+
T Consensus 169 ~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 169 GKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp CCCTTGGGTHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHcCCeE
Confidence 777777788999999999986
No 7
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.77 E-value=28 Score=28.05 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=56.2
Q ss_pred eEEEEeccchhhhhhhcccCC------CChhHHHHHHHHHHH--hhhhcCCCchhhhccCCCCCCHHHH-HHHHHHhCCC
Q 013956 276 YIALHLRFEPDMLAFSGCYYG------GGDKERKELGAIRKR--WKTLHISNPDKERRHGKCPLTPLEV-GLMLRALGYG 346 (433)
Q Consensus 276 fiALHLR~E~DMLAfsgC~~g------~~~~E~~eL~~~R~~--wk~~~~~~~~~~R~~G~CPLtPeEv-gl~L~alGf~ 346 (433)
-|+-=++.+ |=-.|+||.-. +--.|+-.+.++-.. .+...++-.. ...+. +++|=-. --+|.- |.
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~~~~~~~~~~--~~~~~-~~~PCG~CRQ~l~E--~~ 100 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISS--DLQEE-FISPCGACRQVMRE--FG 100 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEE--SCSSS-CCCCCHHHHHHHHH--TC
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCccEEEEEeec--ccCCC-CCCcchhhhHHHHh--hC
Confidence 366666765 55666666532 234578777766542 1111110000 00111 2333211 234555 45
Q ss_pred CcceEEEEeccccCcccchhhHHhhCCCccccccccc
Q 013956 347 SDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIAS 383 (433)
Q Consensus 347 ~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s 383 (433)
.++.||+...+ |+.....|+++.|.-+++++|-.
T Consensus 101 ~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 101 TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 78899998876 66667789999999999998853
No 8
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.68 E-value=51 Score=22.92 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 013956 331 LTPLEVGLMLRALGYGSD 348 (433)
Q Consensus 331 LtPeEvgl~L~alGf~~~ 348 (433)
++++|+..+|+.+|+..+
T Consensus 27 I~~~el~~~l~~~g~~~t 44 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSPS 44 (77)
T ss_dssp EEHHHHHHHHHHHTCCCC
T ss_pred EChHHHHHHHHHhCCCCC
Confidence 788888888888887653
No 9
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.25 E-value=33 Score=24.82 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=19.9
Q ss_pred hhccCCCCCCHHHHHHHHHHhCCCC
Q 013956 323 ERRHGKCPLTPLEVGLMLRALGYGS 347 (433)
Q Consensus 323 ~R~~G~CPLtPeEvgl~L~alGf~~ 347 (433)
.+.-|.. ++++|+..+|+.|||.-
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCce
Confidence 4556765 99999999999999964
No 10
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=16.78 E-value=50 Score=26.21 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=29.6
Q ss_pred HHHHHhCCCCcceEEEEeccccCcccchhhHHhhCCCccccccc
Q 013956 338 LMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETI 381 (433)
Q Consensus 338 l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L 381 (433)
-+|.-++ +.++.||+...+ |+.....|+++.|.=+++++|
T Consensus 91 Q~l~E~~-~~~~~i~l~~~~---g~~~~~~l~eLLP~~F~~~dL 130 (130)
T d1uwza_ 91 QVISELC-TKDVIVVLTNLQ---GQIKEMTVEELLPGAFSSEDL 130 (130)
T ss_dssp HHHHHHS-CTTCEEEEECSS---SCEEEEEHHHHSTTCCCGGGC
T ss_pred HHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCCCCcccC
Confidence 3455553 568999999887 444445799999999998876
Done!