BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013957
         (433 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
          Length = 379

 Score = 32.3 bits (72), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 29/150 (19%)

Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQAQHF 228
           +LP F++      ++T +     NG++ L L ++  ++N E PL        H   A   
Sbjct: 145 ELPDFVVGIXARXSRTVIGD---NGITPLELAKQIQQENQEIPLX------VHIGSAPPH 195

Query: 229 L----------DLLRLCFQPPQPRSCRAQNKLRTETQNIPT-AMQLHQAGVKFQLGSSAN 277
           L          D+L  CF      + +    L   T  I   A Q +  GV F +G   +
Sbjct: 196 LDEILALXEKGDVLTHCF------NGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTD 249

Query: 278 LFDITFNV-EGILEIPLLRISESTEILFRN 306
            F+  F+V E  L       S ST+I  RN
Sbjct: 250 SFN--FHVAETALREGXKAASISTDIYIRN 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,912,205
Number of Sequences: 62578
Number of extensions: 462035
Number of successful extensions: 1112
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 2
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)