BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013957
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 218/428 (50%), Gaps = 40/428 (9%)
Query: 31 QKCCIYRVPQQIRGLNPKAHTPQLVSIGPFHHGDNEELRATEEIKIRYLEYFL---QRTE 87
+ CCI+RVP+ LNPKA+ P++VSIGP+H+G+ + L+ ++ K R L+ FL ++ +
Sbjct: 44 ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGE-KHLQMIQQHKPRLLQLFLDEAKKKD 102
Query: 88 VSIETFLAYVKNKEEQLRDCYAETIRLENEDFITMVLVDAVFLIEFLLRYSFPNLVSTGD 147
V + V + E+++R Y+E ++ D + M+++D F++ L S N+ + D
Sbjct: 103 VEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMS-GNIELSED 160
Query: 148 PIFTKSRLISNMWLDIWLLENQLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDN 207
PIF+ L+S++ D+ LLENQ+P F+L L+ +K V+ D L + F+K+
Sbjct: 161 PIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD------LNRIAFHFFKNP 214
Query: 208 YEFPLMEANLFETHFK-QAQHFLDLLRLCFQPPQPRSCRAQNK------LRTETQNIP-- 258
+ E + +E H +A+H LDL+R F P S +A + ++ N+P
Sbjct: 215 ID---KEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSV 271
Query: 259 ---------TAMQLHQAGVKFQLGSSANLFDITFNV---EGILEIPLLRISESTEILFRN 306
+A +L G+KF+L S D NV + L+IP LR F N
Sbjct: 272 DSKAVPLILSAKRLRLQGIKFRLRRSKE--DSILNVRLKKNKLQIPQLRFDGFISSFFLN 329
Query: 307 LQAFERLHC-GTRYINDYVIIMNYLVNTAHDVDLLVQNR-VIENWLWNSEAVSNLFHNLV 364
AFE+ + + I Y++ M L+N DV L ++ +IEN ++ VS F +
Sbjct: 330 CVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTIS 389
Query: 365 QETSLSAKNFQYTDLVEDLRAYCRYRWHRWKAMLRQDYFNSPWASISVIAAVILLLLTLI 424
++ ++ + + Y + ++ A R +F SPW +S A + ++LLT++
Sbjct: 390 KDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTML 449
Query: 425 QAICSIIA 432
Q+ +I++
Sbjct: 450 QSTVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 33 CCIYRVPQQIRGLNPKAHTPQLVSIGPFHHGDNEELRATEEIKIRYLEYFL-QRTEVSIE 91
I+ VP+ + +P ++TP VSIGP+H EL E K+ Q
Sbjct: 43 VSIFNVPKALMCSHPDSYTPHRVSIGPYH-CLKPELHEMERYKLMIARKIRNQYNSFRFH 101
Query: 92 TFLAYVKNKEEQLRDCYAETIRLENEDFITMVLVDAVFLIEFLLRYSFPNLVSTGDPIFT 151
+ +++ E ++R CY + I E + ++ VD+ FLIEFL YSF + + +
Sbjct: 102 DLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLIN---- 157
Query: 152 KSRLISNMWL-DIWLLENQLPLFILDDL--FNLAKTAVNHDSYNGVSLLSLTRRFYKDNY 208
R+ N L DI ++ENQ+PLF+L F L T D LLS+ KD
Sbjct: 158 --RVGHNEILRDIMMIENQIPLFVLRKTLEFQLESTESADD-----LLLSVLTGLCKDLS 210
Query: 209 EFPLM----EANLFETHFKQAQHFLDLLRLCFQP 238
PL+ + + + F++ H LD L P
Sbjct: 211 --PLVIKFDDDQILKAQFQECNHILDFLYQMIVP 242
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 253 ETQNIPTAMQLHQAGVKFQLGSSANLFDITFNV-EGILEIPLLRISESTEILFRNLQAFE 311
E IP+ LH+AGV+F+ + N+ +TF+ G +P++ + +TE + RNL A+E
Sbjct: 341 EELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYE 400
Query: 312 RLH-CGTRYINDYVIIMNYLVNTAHDVDLLVQNRVIENWLWNSEAVSNLFHNLVQETSLS 370
+ G Y ++N ++++ DV LL + V+ + L + + + +++ + + L+
Sbjct: 401 ATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLT 460
Query: 371 AKNFQYTDLVEDLRAYCRYRWHRWKAMLRQDYFNSPW 407
F +ED+ Y RW L + Y W
Sbjct: 461 KVGF-LDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496
>sp|B0TY16|PLSX_FRAP2 Phosphate acyltransferase OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=plsX PE=3 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + LF K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPVIMSLPLFKKMKKGMNLDSFNGASLLGLTGIVVKSHGS---ASANAFETAIYEA 328
>sp|A0Q7J6|PLSX_FRATN Phosphate acyltransferase OS=Francisella tularensis subsp. novicida
(strain U112) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|A4IWY2|PLSX_FRATW Phosphate acyltransferase OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|Q5NF71|PLSX_FRATT Phosphate acyltransferase OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|Q0BLP7|PLSX_FRATO Phosphate acyltransferase OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|B2SFU3|PLSX_FRATM Phosphate acyltransferase OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|Q2A374|PLSX_FRATH Phosphate acyltransferase OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|A7NCH8|PLSX_FRATF Phosphate acyltransferase OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|Q14GM4|PLSX_FRAT1 Phosphate acyltransferase OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=plsX PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 169 QLPLFILDDLFNLAKTAVNHDSYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQA 225
++P+ + +F K +N DS+NG SLL LT K + AN FET +A
Sbjct: 275 KIPIVMALPIFKKMKKGMNLDSFNGASLLGLTGIVVKSHGG---ASANAFETAIYEA 328
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 79 LEYFLQRTEVSIETFLAYVKNKEEQLRDCYAETIRLENED 118
+E L + S+E F A + + EEQ++ C++E +L ED
Sbjct: 711 MEKQLHQVNASVENFKARIAHNEEQMKGCFSEAYKLIQED 750
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,354,841
Number of Sequences: 539616
Number of extensions: 6095483
Number of successful extensions: 17826
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17811
Number of HSP's gapped (non-prelim): 20
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)