Query 013957
Match_columns 433
No_of_seqs 138 out of 677
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 00:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 7E-110 1E-114 854.5 34.4 377 35-422 1-391 (391)
2 PRK10404 hypothetical protein; 75.2 6.5 0.00014 32.9 5.1 19 405-424 79-97 (101)
3 PF09069 EF-hand_3: EF-hand; 69.7 12 0.00025 30.7 5.2 54 73-126 2-76 (90)
4 PF14770 TMEM18: Transmembrane 61.5 12 0.00027 32.4 4.1 49 380-431 55-103 (123)
5 PF12911 OppC_N: N-terminal TM 61.1 9.4 0.0002 27.7 2.9 31 399-429 9-39 (56)
6 PF07438 DUF1514: Protein of u 59.0 11 0.00023 28.8 2.8 21 407-427 2-22 (66)
7 PRK10132 hypothetical protein; 47.5 18 0.0004 30.6 2.8 24 400-424 79-103 (108)
8 PF14579 HHH_6: Helix-hairpin- 45.1 1.1E+02 0.0023 24.6 6.9 83 267-353 1-86 (90)
9 PF11293 DUF3094: Protein of u 44.9 53 0.0011 24.2 4.4 34 381-419 10-43 (55)
10 KOG4134 DNA-dependent RNA poly 41.8 23 0.0005 33.8 2.8 40 30-81 22-61 (253)
11 PF05421 DUF751: Protein of un 41.7 48 0.001 25.1 4.0 31 402-432 30-60 (61)
12 COG4575 ElaB Uncharacterized c 34.3 39 0.00086 28.3 2.8 23 400-423 76-99 (104)
13 PF15103 G0-G1_switch_2: G0/G1 33.6 40 0.00086 28.1 2.6 24 409-432 28-51 (102)
14 PHA02103 hypothetical protein 33.3 72 0.0016 26.9 4.1 59 288-349 36-104 (135)
15 PF10961 DUF2763: Protein of u 32.7 55 0.0012 26.8 3.4 27 404-430 13-42 (91)
16 KOG3110 Riboflavin kinase [Coe 32.5 29 0.00064 30.5 1.8 60 50-109 65-138 (153)
17 PF04971 Lysis_S: Lysis protei 28.7 86 0.0019 24.3 3.6 32 394-425 20-51 (68)
18 PF11446 DUF2897: Protein of u 27.3 73 0.0016 23.6 2.9 20 405-424 4-23 (55)
19 PF09820 AAA-ATPase_like: Pred 25.7 75 0.0016 31.3 3.7 59 350-413 223-282 (284)
20 cd00925 Cyt_c_Oxidase_VIa Cyto 24.8 73 0.0016 25.9 2.7 26 404-429 13-38 (86)
21 PF00473 CRF: Corticotropin-re 23.0 31 0.00066 23.8 0.2 23 291-314 1-23 (39)
22 PF05957 DUF883: Bacterial pro 21.6 95 0.0021 25.1 2.9 20 404-424 71-90 (94)
23 PHA02947 S-S bond formation pa 21.0 90 0.002 29.6 2.9 19 403-421 175-194 (215)
24 PHA02680 ORF090 IMV phosphoryl 20.7 1.6E+02 0.0034 24.0 3.8 28 405-432 43-70 (91)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=6.7e-110 Score=854.45 Aligned_cols=377 Identities=42% Similarity=0.762 Sum_probs=337.1
Q ss_pred eeecCcccccCCCCCCCcceeeecCCCCCCchhhhHHHHHHHHHHHHHHhhch---hhHHHHHHHHHhHHHHHHhhhhhc
Q 013957 35 IYRVPQQIRGLNPKAHTPQLVSIGPFHHGDNEELRATEEIKIRYLEYFLQRTE---VSIETFLAYVKNKEEQLRDCYAET 111 (433)
Q Consensus 35 I~rVP~~lr~~~~~aY~P~~VsIGPyHhg~~~~L~~mE~~K~~~l~~~l~r~~---~~l~~~~~~i~~~e~~aR~cY~e~ 111 (433)
|||||+++|++|+++|+|++|||||||||+ ++|+.||++|++|+++|++|++ .++++++++|+++|++||+||+++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~-~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~ 79 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGK-PDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAED 79 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCc-hhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999999999999 9999999999999999999998 789999999999999999999999
Q ss_pred cC-CChHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCC-ccccchhhhhhhhhhHhhccCchHHHHHHHHHhhcccCCCC
Q 013957 112 IR-LENEDFITMVLVDAVFLIEFLLRYSFPNLVSTGDP-IFTKSRLISNMWLDIWLLENQLPLFILDDLFNLAKTAVNHD 189 (433)
Q Consensus 112 ~~-~~~~ef~~MmllDgCFiLe~~~~~~~~~~~~~~d~-~~~~~~~~~~i~~Dl~LLENQiPffVLe~L~~~~~~~~~~~ 189 (433)
++ +++++|++||++|||||||+|+++.. .....|| ++..+|+...|.+||+|||||||||||++||++...+....
T Consensus 80 ~~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~ 157 (391)
T PF03140_consen 80 IDDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDV 157 (391)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCc
Confidence 97 99999999999999999999998876 2345788 88999999999999999999999999999999998433333
Q ss_pred CCCcccHHHHHHHhcccccCCCccccccccccccccCCHHHHHHHhcCCCCC--CC-c-ccccc---cccccccCCChhH
Q 013957 190 SYNGVSLLSLTRRFYKDNYEFPLMEANLFETHFKQAQHFLDLLRLCFQPPQP--RS-C-RAQNK---LRTETQNIPTAMQ 262 (433)
Q Consensus 190 ~~~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~--~~-~-~~~~~---~~~~~~~~~sAte 262 (433)
..++.+++.+||....+.. .+.. .....+++|||||+|.+++|++. .+ + .+... ...... ||||||
T Consensus 158 ---~~~l~~l~~~~~~~~~~~~-~~~~--~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~sA~e 230 (391)
T PF03140_consen 158 ---DESLIDLVLKFFYKHWPSW-PPDE--PISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKR-IRSATE 230 (391)
T ss_pred ---cchHHHHHHhHhccccccc-cccc--cccCCCCCChHHHHHHHhccccCCcccCCCCccccccccccccc-CCCHHH
Confidence 6889999999994333222 1111 12456899999999999999321 11 1 11100 112344 999999
Q ss_pred HhHcCcEEEeCCCC-CccceEEccCCeeecceeEeecchhHHHHHHHHHHHhhCC-CcchhhHHHHHHhhhCChhhHHHh
Q 013957 263 LHQAGVKFQLGSSA-NLFDITFNVEGILEIPLLRISESTEILFRNLQAFERLHCG-TRYINDYVIIMNYLVNTAHDVDLL 340 (433)
Q Consensus 263 L~~aGVkfk~~~~~-~~lDV~F~~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~-~~~vtsYv~fM~~Li~t~~DV~lL 340 (433)
|++|||+||++++. +++||+| ++|+|+||+|.||++|+++||||||||||+.. +.+||||+.||++||+|++||++|
T Consensus 231 L~~aGV~fk~~~~~~~~lDv~F-~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL 309 (391)
T PF03140_consen 231 LREAGVKFKPSETDRSLLDVKF-KKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELL 309 (391)
T ss_pred HHhCCcEEeeccCcccccccee-cCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHH
Confidence 99999999998876 5999999 99999999999999999999999999999998 899999999999999999999999
Q ss_pred hhCCceeecCCChHHHHHHHHhhccccccCCCCccHHHHHHHHHHHhhchhHHhHHhhcccccccchHHHHHHHHHHHHH
Q 013957 341 VQNRVIENWLWNSEAVSNLFHNLVQETSLSAKNFQYTDLVEDLRAYCRYRWHRWKAMLRQDYFNSPWASISVIAAVILLL 420 (433)
Q Consensus 341 ~~~gIi~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~v~~y~~~r~~~~~a~l~~~yf~npW~~is~~aA~ill~ 420 (433)
+++|||+|++|+|+||++|||+||++++.+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++++
T Consensus 310 ~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~ 389 (391)
T PF03140_consen 310 RRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLL 389 (391)
T ss_pred HhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999777889999999999999999999999999999999999999999999999
Q ss_pred HH
Q 013957 421 LT 422 (433)
Q Consensus 421 lt 422 (433)
+|
T Consensus 390 lT 391 (391)
T PF03140_consen 390 LT 391 (391)
T ss_pred hC
Confidence 97
No 2
>PRK10404 hypothetical protein; Provisional
Probab=75.19 E-value=6.5 Score=32.86 Aligned_cols=19 Identities=47% Similarity=0.779 Sum_probs=14.3
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 013957 405 SPWASISVIAAVILLLLTLI 424 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~i 424 (433)
|||..+++.|+ +.|++.++
T Consensus 79 ~Pw~avGiaag-vGlllG~L 97 (101)
T PRK10404 79 KPWQGIGVGAA-VGLVLGLL 97 (101)
T ss_pred CcHHHHHHHHH-HHHHHHHH
Confidence 89999986554 77777665
No 3
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.73 E-value=12 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.437 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHH-------------HhHHHHHHhhhhh---ccCCChHHHHHHHHHH
Q 013957 73 EIKIRYLEYFLQRTE-----VSIETFLAYV-------------KNKEEQLRDCYAE---TIRLENEDFITMVLVD 126 (433)
Q Consensus 73 ~~K~~~l~~~l~r~~-----~~l~~~~~~i-------------~~~e~~aR~cY~e---~~~~~~~ef~~MmllD 126 (433)
+.|.||+-++++.++ ..++.++..+ ...|..+|+|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 468999999998643 2344444333 2368899999987 5578899999888654
No 4
>PF14770 TMEM18: Transmembrane protein 18
Probab=61.48 E-value=12 Score=32.39 Aligned_cols=49 Identities=31% Similarity=0.459 Sum_probs=37.3
Q ss_pred HHHHHHHhhchhHHhHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 013957 380 VEDLRAYCRYRWHRWKAMLRQDYFNSPWASISVIAAVILLLLTLIQAICSII 431 (433)
Q Consensus 380 ~~~v~~y~~~r~~~~~a~l~~~yf~npW~~is~~aA~ill~lt~iQt~~sv~ 431 (433)
.+.+|+|..+.|+. .-+++||.+-=.+||++.++=+|+.+++..+..++
T Consensus 55 aE~iN~~~a~nW~~---Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~ 103 (123)
T PF14770_consen 55 AEYINEYAARNWRS---FSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWLY 103 (123)
T ss_pred HHHHHHHHHHHHHH---HhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHHH
Confidence 48899999888743 34589999999999999988777766666655443
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=61.08 E-value=9.4 Score=27.71 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=25.3
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 013957 399 RQDYFNSPWASISVIAAVILLLLTLIQAICS 429 (433)
Q Consensus 399 ~~~yf~npW~~is~~aA~ill~lt~iQt~~s 429 (433)
.+.+++|+...+|++.-+++++++++.-+.+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~ 39 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFIS 39 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4778889999999988888888888876654
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=59.01 E-value=11 Score=28.77 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013957 407 WASISVIAAVILLLLTLIQAI 427 (433)
Q Consensus 407 W~~is~~aA~ill~lt~iQt~ 427 (433)
|.++|.+.|+++|++-.+|+-
T Consensus 2 WIiiSIvLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSE 22 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHH
Confidence 999999999999999888874
No 7
>PRK10132 hypothetical protein; Provisional
Probab=47.48 E-value=18 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.625 Sum_probs=16.2
Q ss_pred ccccc-cchHHHHHHHHHHHHHHHHH
Q 013957 400 QDYFN-SPWASISVIAAVILLLLTLI 424 (433)
Q Consensus 400 ~~yf~-npW~~is~~aA~ill~lt~i 424 (433)
.+|-. |||..+++.|+ +.|++.++
T Consensus 79 ~~~V~~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 79 DTFVRERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred HHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 44444 89999996554 66666654
No 8
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=45.05 E-value=1.1e+02 Score=24.63 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=56.4
Q ss_pred CcEEEeCC-CCCccceEEc-cCCeeecceeEeecchhHHHHHHHHHHHhhCCCcchhhHHHHHHhh-hCChhhHHHhhhC
Q 013957 267 GVKFQLGS-SANLFDITFN-VEGILEIPLLRISESTEILFRNLQAFERLHCGTRYINDYVIIMNYL-VNTAHDVDLLVQN 343 (433)
Q Consensus 267 GVkfk~~~-~~~~lDV~F~-~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~vtsYv~fM~~L-i~t~~DV~lL~~~ 343 (433)
||++.+.. ..+-.+-+.. ++|.+.+|=-.|..-.+.....+++-=+ . ..++|+.-|...+ --+..+++.|.+.
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~---g~f~s~~df~~R~~~i~~~~le~Li~a 76 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N---GPFKSLEDFIQRLPKINKRQLEALIKA 76 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C---SS-SSHHHHHHHS-TS-HHHHHHHHHT
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c---CCCCCHHHHHHHHhcCCHHHHHHHHHC
Confidence 78887753 3444565563 2389999999999999998888876555 3 3478899999988 7789999999999
Q ss_pred CceeecCCCh
Q 013957 344 RVIENWLWNS 353 (433)
Q Consensus 344 gIi~n~lgsd 353 (433)
|.++..-+++
T Consensus 77 Gafd~~~~~~ 86 (90)
T PF14579_consen 77 GAFDSFGKSR 86 (90)
T ss_dssp TTTTTCSSCH
T ss_pred CCccccChhh
Confidence 9998865544
No 9
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.87 E-value=53 Score=24.22 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=25.8
Q ss_pred HHHHHHhhchhHHhHHhhcccccccchHHHHHHHHHHHH
Q 013957 381 EDLRAYCRYRWHRWKAMLRQDYFNSPWASISVIAAVILL 419 (433)
Q Consensus 381 ~~v~~y~~~r~~~~~a~l~~~yf~npW~~is~~aA~ill 419 (433)
++|++|-++.|+. .-|+=|+ ||..+.++.|+++.
T Consensus 10 ~~Vd~yL~a~~~~----VER~PFr-P~~Ll~~li~Vv~g 43 (55)
T PF11293_consen 10 QRVDEYLQAGVNQ----VERKPFR-PWRLLIVLIVVVIG 43 (55)
T ss_pred HHHHHHHhCCCCc----cccCCcc-hHHHHHHHHHHHHH
Confidence 7899999999973 2355555 99999888876653
No 10
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=41.77 E-value=23 Score=33.76 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=29.2
Q ss_pred CCCceeeecCcccccCCCCCCCcceeeecCCCCCCchhhhHHHHHHHHHHHH
Q 013957 30 PQKCCIYRVPQQIRGLNPKAHTPQLVSIGPFHHGDNEELRATEEIKIRYLEY 81 (433)
Q Consensus 30 ~~~~~I~rVP~~lr~~~~~aY~P~~VsIGPyHhg~~~~L~~mE~~K~~~l~~ 81 (433)
++.-|++++|-.+ .+|+||||-.+ +.-..||+|=-.-+..
T Consensus 22 sp~sclv~~t~dl-----------hlalaP~yl~n-pl~~~i~ehld~~vl~ 61 (253)
T KOG4134|consen 22 SPESCLVCITTDL-----------HLALAPYYLAN-PLHALIEEHLDTKVLF 61 (253)
T ss_pred CCcceEEEeeehe-----------eeeecchhhcc-hhHHHHHHHhhHHHhh
Confidence 4566999999876 89999999988 5444677765443333
No 11
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=41.74 E-value=48 Score=25.11 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=26.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013957 402 YFNSPWASISVIAAVILLLLTLIQAICSIIA 432 (433)
Q Consensus 402 yf~npW~~is~~aA~ill~lt~iQt~~sv~~ 432 (433)
-++||-++++++++++..+..+.+|+-+++.
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMlg 60 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAMLG 60 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999888764
No 12
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=34.35 E-value=39 Score=28.31 Aligned_cols=23 Identities=48% Similarity=0.886 Sum_probs=15.2
Q ss_pred ccccc-cchHHHHHHHHHHHHHHHH
Q 013957 400 QDYFN-SPWASISVIAAVILLLLTL 423 (433)
Q Consensus 400 ~~yf~-npW~~is~~aA~ill~lt~ 423 (433)
-+|-. |||..|++-|| +.|++.+
T Consensus 76 D~yV~e~PWq~VGvaAa-VGlllGl 99 (104)
T COG4575 76 DDYVRENPWQGVGVAAA-VGLLLGL 99 (104)
T ss_pred HHHHHcCCchHHHHHHH-HHHHHHH
Confidence 34554 89999997666 4555544
No 13
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=33.64 E-value=40 Score=28.12 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 013957 409 SISVIAAVILLLLTLIQAICSIIA 432 (433)
Q Consensus 409 ~is~~aA~ill~lt~iQt~~sv~~ 432 (433)
.++.+.|++..++.+++|+||-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 677888999999999999998654
No 14
>PHA02103 hypothetical protein
Probab=33.33 E-value=72 Score=26.86 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=42.8
Q ss_pred eeecceeEeecchhHHHHHHHHHHHhhCC---C-------cchhhHHHHHHhhhCChhhHHHhhhCCceeec
Q 013957 288 ILEIPLLRISESTEILFRNLQAFERLHCG---T-------RYINDYVIIMNYLVNTAHDVDLLVQNRVIENW 349 (433)
Q Consensus 288 ~L~IP~L~id~~T~~llrNLiA~Eq~~~~---~-------~~vtsYv~fM~~Li~t~~DV~lL~~~gIi~n~ 349 (433)
.-+||.+..|....-+-|=.+-+|.|... + .++-+|-.. .-..+|-|++-.+-||=.-|
T Consensus 36 ~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry---f~ee~e~ie~we~ygve~l~ 104 (135)
T PHA02103 36 EYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY---FGEEAEGVELWEEYGVEGLC 104 (135)
T ss_pred EEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH---hcccchhhhHHHHhCcceee
Confidence 45699999999999999999999999754 1 245555543 34567777777777774433
No 15
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=32.71 E-value=55 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=19.4
Q ss_pred ccchH---HHHHHHHHHHHHHHHHHHHHHh
Q 013957 404 NSPWA---SISVIAAVILLLLTLIQAICSI 430 (433)
Q Consensus 404 ~npW~---~is~~aA~ill~lt~iQt~~sv 430 (433)
++||. ++-++-+++-+|..++||+++.
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35773 5667777777788888888764
No 16
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=32.46 E-value=29 Score=30.48 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=37.5
Q ss_pred CCcceeeec--CCCCCCc--hhhhHHHHHHHHHHHHHHhh-------ch---hhHHHHHHHHHhHHHHHHhhhh
Q 013957 50 HTPQLVSIG--PFHHGDN--EELRATEEIKIRYLEYFLQR-------TE---VSIETFLAYVKNKEEQLRDCYA 109 (433)
Q Consensus 50 Y~P~~VsIG--PyHhg~~--~~L~~mE~~K~~~l~~~l~r-------~~---~~l~~~~~~i~~~e~~aR~cY~ 109 (433)
--|.++||| ||..++. -++..+++.|--+-.+.++- .. .++++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8887771 12333444444333333321 11 3699999999988888887554
No 17
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.70 E-value=86 Score=24.28 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=23.8
Q ss_pred hHHhhcccccccchHHHHHHHHHHHHHHHHHH
Q 013957 394 WKAMLRQDYFNSPWASISVIAAVILLLLTLIQ 425 (433)
Q Consensus 394 ~~a~l~~~yf~npW~~is~~aA~ill~lt~iQ 425 (433)
|...+.-.+-+.-|.+|+++.++++-++|.+-
T Consensus 20 wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 20 WLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 44445455666789999999999888888653
No 18
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.29 E-value=73 Score=23.61 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=16.2
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 013957 405 SPWASISVIAAVILLLLTLI 424 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~i 424 (433)
+||.+|.++.|+|+--++++
T Consensus 4 ~~wlIIviVlgvIigNia~L 23 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAAL 23 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHH
Confidence 79999999999887666654
No 19
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=25.75 E-value=75 Score=31.33 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=40.7
Q ss_pred CC-ChHHHHHHHHhhccccccCCCCccHHHHHHHHHHHhhchhHHhHHhhcccccccchHHHHHH
Q 013957 350 LW-NSEAVSNLFHNLVQETSLSAKNFQYTDLVEDLRAYCRYRWHRWKAMLRQDYFNSPWASISVI 413 (433)
Q Consensus 350 lg-sdeeva~lFn~L~~~~~~~~~~~y~~~v~~~v~~y~~~r~~~~~a~l~~~yf~npW~~is~~ 413 (433)
+| +++||.++|+...+...... . ....+++|.++|+.-...+... ..--.|||.++..+
T Consensus 223 ~GFT~~Ev~~ll~~~~~~~~~~~--~-~~~~~~~lk~wYdGY~F~~~~~--~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 223 FGFTEEEVETLLKYYIENLAEEQ--D-REELLEELKEWYDGYHFGESSE--GERIYNPWSVLNYL 282 (284)
T ss_pred cCcCHHHHHHHHHHHHHHhhhcc--c-hHHHHHHHHHHcCCcccCCCCC--CCCEEChHHHHHHh
Confidence 45 78899999998876664422 3 7788999999998653221110 24556999998765
No 20
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=24.82 E-value=73 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 013957 404 NSPWASISVIAAVILLLLTLIQAICS 429 (433)
Q Consensus 404 ~npW~~is~~aA~ill~lt~iQt~~s 429 (433)
.+-|+.||+++|+-+++++.+.|+..
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 35689999999998889999988753
No 21
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=22.99 E-value=31 Score=23.76 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=16.8
Q ss_pred cceeEeecchhHHHHHHHHHHHhh
Q 013957 291 IPLLRISESTEILFRNLQAFERLH 314 (433)
Q Consensus 291 IP~L~id~~T~~llrNLiA~Eq~~ 314 (433)
.|+|.|| .|--+||+++..|-..
T Consensus 1 ~PslSId-l~~~vLR~~l~~~~a~ 23 (39)
T PF00473_consen 1 MPSLSID-LTFHVLRQRLELERAE 23 (39)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCcccc-cHHHHHHHHHHHHHHH
Confidence 3888888 6999999999888643
No 22
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.63 E-value=95 Score=25.10 Aligned_cols=20 Identities=35% Similarity=0.811 Sum_probs=13.7
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 013957 404 NSPWASISVIAAVILLLLTLI 424 (433)
Q Consensus 404 ~npW~~is~~aA~ill~lt~i 424 (433)
.|||..+++.++ +++++..+
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 489999987666 55555543
No 23
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.97 E-value=90 Score=29.60 Aligned_cols=19 Identities=21% Similarity=0.845 Sum_probs=13.2
Q ss_pred ccc-chHHHHHHHHHHHHHH
Q 013957 403 FNS-PWASISVIAAVILLLL 421 (433)
Q Consensus 403 f~n-pW~~is~~aA~ill~l 421 (433)
|++ ||.++++++.++++++
T Consensus 175 ~~~~~W~i~~~~~i~~i~~i 194 (215)
T PHA02947 175 YSNKPWFIVGVVIILIIFVI 194 (215)
T ss_pred cCCCchHHHHHHHHHHHHHH
Confidence 466 9999977666555554
No 24
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.65 E-value=1.6e+02 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013957 405 SPWASISVIAAVILLLLTLIQAICSIIA 432 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~iQt~~sv~~ 432 (433)
++|+++|.++=++..++++-=-+||.+.
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788887776666666665555666553
Done!