Query 013957
Match_columns 433
No_of_seqs 138 out of 677
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 34.3 11 0.00039 24.5 0.6 21 292-313 1-21 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 27.2 15 0.00052 24.1 0.3 20 292-312 3-22 (40)
3 1v54_G Cytochrome C oxidase po 15.8 93 0.0032 24.1 2.7 24 405-428 14-37 (85)
4 2kru_A Light-independent proto 15.4 45 0.0015 24.4 0.7 15 167-181 14-28 (63)
5 2y69_G Cytochrome C oxidase po 12.7 1.3E+02 0.0043 23.9 2.7 24 405-428 26-49 (97)
6 2yj3_A Copper-transporting ATP 14.8 53 0.0018 30.1 0.0 88 259-346 5-100 (263)
7 3s8f_C Cytochrome C oxidase po 10.8 2.7E+02 0.0094 17.6 3.3 21 411-431 7-27 (34)
8 3ism_C CG4930; endonuclease, e 10.7 2.1E+02 0.0073 27.5 4.0 68 333-400 218-301 (359)
9 2l09_A ASR4154 protein; proto- 9.7 46 0.0016 24.3 -0.8 14 168-181 14-27 (62)
10 1go9_A Corticotropin releasing 9.6 22 0.00076 23.6 -2.2 20 292-312 4-23 (42)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=34.28 E-value=11 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.1
Q ss_pred ceeEeecchhHHHHHHHHHHHh
Q 013957 292 PLLRISESTEILFRNLQAFERL 313 (433)
Q Consensus 292 P~L~id~~T~~llrNLiA~Eq~ 313 (433)
||+.+| -|.-+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 788887 699999999876544
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=27.16 E-value=15 Score=24.15 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=16.5
Q ss_pred ceeEeecchhHHHHHHHHHHH
Q 013957 292 PLLRISESTEILFRNLQAFER 312 (433)
Q Consensus 292 P~L~id~~T~~llrNLiA~Eq 312 (433)
||+.|| -|.-+||||+-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 888887 69999999986643
No 3
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=15.83 E-value=93 Score=24.06 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 013957 405 SPWASISVIAAVILLLLTLIQAIC 428 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~iQt~~ 428 (433)
+-|+-||+++|+=+++++.++++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999888888888763
No 4
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=15.44 E-value=45 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=11.1
Q ss_pred ccCchHHHHHHHHHh
Q 013957 167 ENQLPLFILDDLFNL 181 (433)
Q Consensus 167 ENQiPffVLe~L~~~ 181 (433)
=++|||||=.++=.-
T Consensus 14 LkkIP~FVR~kvrr~ 28 (63)
T 2kru_A 14 LGKVPFFVRKKVRKN 28 (63)
T ss_dssp HTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 367999998776543
No 5
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.68 E-value=1.3e+02 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 013957 405 SPWASISVIAAVILLLLTLIQAIC 428 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~iQt~~ 428 (433)
+-|+-||+++|+=+++++.++++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999998888888888763
No 6
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=14.76 E-value=53 Score=30.06 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=53.4
Q ss_pred ChhHHhHcCcEEEeCCC----CCccceEEccCCeeecceeEeecc--hhHHHHHHHHHHHhhCC--CcchhhHHHHHHhh
Q 013957 259 TAMQLHQAGVKFQLGSS----ANLFDITFNVEGILEIPLLRISES--TEILFRNLQAFERLHCG--TRYINDYVIIMNYL 330 (433)
Q Consensus 259 sAteL~~aGVkfk~~~~----~~~lDV~F~~~G~L~IP~L~id~~--T~~llrNLiA~Eq~~~~--~~~vtsYv~fM~~L 330 (433)
+...+.+.||-+|.++. ..+--|-||+.|||.-....+.+. .+.+++=+.++|+.... ...+..++.=.+.=
T Consensus 5 a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~~~~~~l~~~~~~e~~s~hp~a~ai~~~~~~~g~~ 84 (263)
T 2yj3_A 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVK 84 (263)
Confidence 44566788998887542 234567797889999877776654 45677777788875433 33444443222211
Q ss_pred hCChhhHHHhhhCCce
Q 013957 331 VNTAHDVDLLVQNRVI 346 (433)
Q Consensus 331 i~t~~DV~lL~~~gIi 346 (433)
..+.++++.+.-+|+-
T Consensus 85 ~~~~~~~~~~~G~g~~ 100 (263)
T 2yj3_A 85 ILEVKDFKEISGIGVR 100 (263)
Confidence 2345667766666653
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=10.80 E-value=2.7e+02 Score=17.63 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013957 411 SVIAAVILLLLTLIQAICSII 431 (433)
Q Consensus 411 s~~aA~ill~lt~iQt~~sv~ 431 (433)
++++++.++-+.++=++++++
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHH
Confidence 456666666667776766665
No 8
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=10.67 E-value=2.1e+02 Score=27.48 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=41.3
Q ss_pred ChhhHHHhhhCCceeecCCChHHHHHHHHhhcccc-------ccCCCC--ccHHHHHHHHHHHhhc-------hhHHhHH
Q 013957 333 TAHDVDLLVQNRVIENWLWNSEAVSNLFHNLVQET-------SLSAKN--FQYTDLVEDLRAYCRY-------RWHRWKA 396 (433)
Q Consensus 333 t~~DV~lL~~~gIi~n~lgsdeeva~lFn~L~~~~-------~~~~~~--~y~~~v~~~v~~y~~~-------r~~~~~a 396 (433)
-.+|-+.|-++||+.+-.-.|+---.=|+++|+.. .++..+ .-|.++.+-|.+|..- ++|-|+.
T Consensus 218 PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWIv 297 (359)
T 3ism_C 218 PLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIF 297 (359)
T ss_dssp -CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred cHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHHH
Confidence 34677777777877777666755555677777643 333211 1288999999988652 3477877
Q ss_pred hhcc
Q 013957 397 MLRQ 400 (433)
Q Consensus 397 ~l~~ 400 (433)
.||.
T Consensus 298 klrd 301 (359)
T 3ism_C 298 NLRD 301 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 9
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=9.67 E-value=46 Score=24.25 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.6
Q ss_pred cCchHHHHHHHHHh
Q 013957 168 NQLPLFILDDLFNL 181 (433)
Q Consensus 168 NQiPffVLe~L~~~ 181 (433)
++|||||=.++=.-
T Consensus 14 kkIP~FVR~kvrr~ 27 (62)
T 2l09_A 14 KNIPFFARSQAKAR 27 (62)
T ss_dssp HTSCGGGHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 56999998776543
No 10
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=9.57 E-value=22 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=14.8
Q ss_pred ceeEeecchhHHHHHHHHHHH
Q 013957 292 PLLRISESTEILFRNLQAFER 312 (433)
Q Consensus 292 P~L~id~~T~~llrNLiA~Eq 312 (433)
||+.|| -|.-+||||+-...
T Consensus 4 PPiSiD-LTFHlLR~mlemar 23 (42)
T 1go9_A 4 PPISLD-LTFHLAREVLEMAR 23 (42)
T ss_dssp CCHHHH-HHHHC-CCTTHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 788887 68899999976543
Done!