Query 013957
Match_columns 433
No_of_seqs 138 out of 677
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 20:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013957.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013957hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 57.9 5.7 0.00042 29.9 4.4 52 73-124 3-77 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 22.1 26 0.0019 25.3 2.7 23 405-427 14-36 (84)
3 d2i4ra1 c.149.1.1 (A:4-79) V-t 13.4 33 0.0024 24.0 1.4 23 36-58 54-76 (76)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 11.2 69 0.005 29.8 3.4 26 397-422 400-425 (472)
5 d1v8ca2 d.129.5.1 (A:88-165) M 10.4 50 0.0036 22.4 1.4 19 286-304 48-69 (78)
6 d1awca_ a.4.5.21 (A:) GA bindi 10.1 71 0.0051 24.0 2.4 62 350-416 31-94 (110)
7 d1pzra_ a.38.2.1 (A:) Erythron 9.8 87 0.0063 20.1 2.4 25 81-105 35-59 (60)
8 d1f16a_ f.1.4.1 (A:) Proapopto 9.6 1.7E+02 0.013 23.6 5.1 26 305-330 92-120 (192)
9 d1puee_ a.4.5.21 (E:) Transcri 9.6 2.1E+02 0.016 20.2 4.9 44 343-390 28-71 (88)
10 d1gdha2 c.23.12.1 (A:2-100,A:2 8.2 98 0.0072 23.3 2.7 25 335-359 81-107 (129)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.86 E-value=5.7 Score=29.86 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHH---------------HhHHHHHHhhhhhc---cCCChHHHHHHHH
Q 013957 73 EIKIRYLEYFLQRTE-----VSIETFLAYV---------------KNKEEQLRDCYAET---IRLENEDFITMVL 124 (433)
Q Consensus 73 ~~K~~~l~~~l~r~~-----~~l~~~~~~i---------------~~~e~~aR~cY~e~---~~~~~~ef~~Mml 124 (433)
+.|.||+-+.++.++ ..++.++..+ ..+|..+|+|+... -+++.++|+..|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 469999999998653 2355444333 13588999999633 3577788777664
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.14 E-value=26 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 013957 405 SPWASISVIAAVILLLLTLIQAI 427 (433)
Q Consensus 405 npW~~is~~aA~ill~lt~iQt~ 427 (433)
+-|+.||+++|+-+++++.+.++
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988888888876
No 3
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.42 E-value=33 Score=24.00 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.8
Q ss_pred eecCcccccCCCCCCCcceeeec
Q 013957 36 YRVPQQIRGLNPKAHTPQLVSIG 58 (433)
Q Consensus 36 ~rVP~~lr~~~~~aY~P~~VsIG 58 (433)
-++|+.+++...+.-.|.++.||
T Consensus 54 ~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHhhHHHHHHHhcCCCCEEEecC
Confidence 46788888888888999999998
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.21 E-value=69 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.8
Q ss_pred hhcccccccchHHHHHHHHHHHHHHH
Q 013957 397 MLRQDYFNSPWASISVIAAVILLLLT 422 (433)
Q Consensus 397 ~l~~~yf~npW~~is~~aA~ill~lt 422 (433)
.+++..|+|+|..++++.++++.++.
T Consensus 400 ~~~~~~~~N~~l~~av~i~~~l~~~i 425 (472)
T d1wpga4 400 LMRMPPWVNIWLLGSICLSMSLHFLI 425 (472)
T ss_dssp TTTSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCccccHHHHHHHHHHHHHHHHH
Confidence 34567789999999888776654443
No 5
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.40 E-value=50 Score=22.43 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=13.5
Q ss_pred CCeeecceeEee---cchhHHH
Q 013957 286 EGILEIPLLRIS---ESTEILF 304 (433)
Q Consensus 286 ~G~L~IP~L~id---~~T~~ll 304 (433)
-|.|.||+|.|. +..+.++
T Consensus 48 vgsl~ip~lrvevege~ae~w~ 69 (78)
T d1v8ca2 48 VGSLSIPQLRVEVEGEEAERWF 69 (78)
T ss_dssp ETTEEEEEEEEEEEETTHHHHH
T ss_pred ecceecceEEEEeccHHHHHHH
Confidence 399999999885 3344554
No 6
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.13 E-value=71 Score=24.02 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHhhccccccCCCCccHHHHHHHHHHHhhchhH-HhH-HhhcccccccchHHHHHHHHH
Q 013957 350 LWNSEAVSNLFHNLVQETSLSAKNFQYTDLVEDLRAYCRYRWH-RWK-AMLRQDYFNSPWASISVIAAV 416 (433)
Q Consensus 350 lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~v~~y~~~r~~-~~~-a~l~~~yf~npW~~is~~aA~ 416 (433)
+-+.++||+++-.- |+- . .-. |.++.+.+.-||++.-- +-. ..+...|..+||..++.-++-
T Consensus 31 l~d~e~VA~lWG~~-Knk-~--~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~ 94 (110)
T d1awca_ 31 LNQPELVAQKWGQR-KNK-P--TMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAE 94 (110)
T ss_dssp CSSHHHHHHHHHHH-HTC-T--TCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHH
T ss_pred eCCHHHHHHHHHHh-hCC-C--ccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHH
Confidence 44678999999543 332 1 234 99999999999997642 221 346677888999988655543
No 7
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=9.83 E-value=87 Score=20.05 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHhhchhhHHHHHHHHHhHHHHHH
Q 013957 81 YFLQRTEVSIETFLAYVKNKEEQLR 105 (433)
Q Consensus 81 ~~l~r~~~~l~~~~~~i~~~e~~aR 105 (433)
+.++|+-..++.....+++.|-+|+
T Consensus 35 RYLkRTv~eLdsVtaRLrEvEyRAg 59 (60)
T d1pzra_ 35 RYLKRTVTELDSVTARLREVEHRAG 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666677888888888777664
No 8
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.65 E-value=1.7e+02 Score=23.65 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=12.2
Q ss_pred HHHHHHHHhhCC--C-cchhhHHHHHHhh
Q 013957 305 RNLQAFERLHCG--T-RYINDYVIIMNYL 330 (433)
Q Consensus 305 rNLiA~Eq~~~~--~-~~vtsYv~fM~~L 330 (433)
-+-||=|-.... + ..|.+-..|=..|
T Consensus 92 f~~Va~elF~dG~inWGRIVal~~F~~~L 120 (192)
T d1f16a_ 92 FFRVAADMFSDGNFNWGRVVALFYFASKL 120 (192)
T ss_dssp HHHHHHHHTSSSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 335555555432 1 2345555555555
No 9
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.58 E-value=2.1e+02 Score=20.25 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=29.6
Q ss_pred CCceeecCCChHHHHHHHHhhccccccCCCCccHHHHHHHHHHHhhch
Q 013957 343 NRVIENWLWNSEAVSNLFHNLVQETSLSAKNFQYTDLVEDLRAYCRYR 390 (433)
Q Consensus 343 ~gIi~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~v~~y~~~r 390 (433)
+||..=-..+.++||+++-.--++- . +=+ |.++.+.+.-||++.
T Consensus 28 ~g~F~fv~~~~e~VA~lWG~~K~Nr-~--~Mn-YeklSRaLRyYY~~~ 71 (88)
T d1puee_ 28 KGTFQFSSKHKEALAHRWGIQKGNR-K--KMT-YEKMARALRNYGKTG 71 (88)
T ss_dssp TTEEEECTTTHHHHHHHHHHHHTCS-S--CCC-HHHHHHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHhhcCCC-C--CCc-HHHHHHHHHHHHhcc
Confidence 4555443445688999987554331 1 123 999999999999865
No 10
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=8.22 E-value=98 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=20.0
Q ss_pred hhHHHhhhCCceeecC--CChHHHHHH
Q 013957 335 HDVDLLVQNRVIENWL--WNSEAVSNL 359 (433)
Q Consensus 335 ~DV~lL~~~gIi~n~l--gsdeeva~l 359 (433)
=|++.++++||.+-.- .+.+.||++
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~ 107 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDM 107 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHH
Confidence 3999999999999663 357888884
Done!