BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013958
         (433 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
           GN=At5g41620 PE=1 SV=2
          Length = 623

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 176/305 (57%), Gaps = 26/305 (8%)

Query: 120 PSPKLRETSGGGGYDERRIRRE-ARARERERERVTRSLHSGSLPPHLSDPSHSPVSEVET 178
           PSP  +  S G       +RR+  +   +  + + R+ H+  L P +S  S+    EV T
Sbjct: 118 PSPDHQPDSAGS------LRRQIGQMLIKHHQSIDRNNHA--LQP-VSPASYGSSLEVTT 168

Query: 179 RSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELE 238
            ++A TPS S        ++    L TS ELLK++NR+W  E++  S++SL+ AL  E+ 
Sbjct: 169 YNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVA 228

Query: 239 RARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLR 298
            +R+++ +L++ Q++D+ E+  ++K  AEEK   KNKE E + +A++S+   LE ERKLR
Sbjct: 229 HSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLR 288

Query: 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 358
           +R ESL++K+ +EL+E K SL   VK+L+   ++  ++E +CDE A+ I   + E+  LK
Sbjct: 289 KRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLK 348

Query: 359 RESAIALEEVEK--------EREMIQVADVLREERAQIKLSEAKYQLEEKNAAV-DKLRS 409
           +++      ++K        ++ ++ +A+   +ER Q++L E    L  KN +V DKL  
Sbjct: 349 KKN------LDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGKNRSVLDKLEV 401

Query: 410 QLEAF 414
           ++E F
Sbjct: 402 EIETF 406


>sp|P12755|SKI_HUMAN Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1
          Length = 728

 Score = 34.7 bits (78), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 31/161 (19%)

Query: 243 QVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 302
           +++  +Q +RS   E+ +L       + A K K RE  EA           +R LR+  E
Sbjct: 576 KLSAALQAKRSLHQELEFL-------RVAKKEKLREATEA-----------KRNLRKEIE 617

Query: 303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD---ELARDINDDKSEVEELKR 359
            L  +  K++ E   S L+  ++L+  ++AR     VCD   E  R      +++E+L+ 
Sbjct: 618 RLRAENEKKMKEANESRLRLKRELEQARQAR-----VCDKGCEAGRLRAKYSAQIEDLQ- 671

Query: 360 ESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK 400
              + L+  E +RE ++ AD+LRE  A+  L +   +L+E+
Sbjct: 672 ---VKLQHAEADREQLR-ADLLREREAREHLEKVVKELQEQ 708


>sp|A3KNA5|FIL1L_DANRE Filamin A-interacting protein 1-like OS=Danio rerio GN=filip1l PE=2
           SV=1
          Length = 1129

 Score = 32.0 bits (71), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 19/139 (13%)

Query: 295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKS-- 352
           R+LR++  SL+++L  EL E   +L +A ++L          +++ D+++R    + S  
Sbjct: 313 RQLRQKLSSLSRQLD-ELEEINKTLHRAEEEL----------QELRDKISRGECGNSSLV 361

Query: 353 -EVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQL 411
            EVEEL++     LE   K+ E+I++ D+ RE   +++  EAK     K A VDKL  ++
Sbjct: 362 SEVEELRKR---VLEMEGKDEELIKMEDMCRELNRKLE-KEAKQSCSLK-AEVDKLNHRI 416

Query: 412 EAFSRNQKGKRKRTQFCKS 430
               + +   RK  Q C S
Sbjct: 417 MELEKLEDAFRKSKQECNS 435


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.125    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,128,169
Number of Sequences: 539616
Number of extensions: 5800504
Number of successful extensions: 37333
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 2017
Number of HSP's that attempted gapping in prelim test: 31846
Number of HSP's gapped (non-prelim): 5560
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)