Query 013958
Match_columns 433
No_of_seqs 93 out of 109
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 00:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 97.4 0.037 7.9E-07 61.5 23.8 68 225-304 457-524 (697)
2 PF07888 CALCOCO1: Calcium bin 97.0 0.47 1E-05 51.8 25.3 116 301-417 302-439 (546)
3 KOG0971 Microtubule-associated 96.8 0.19 4E-06 57.7 21.1 174 224-413 272-476 (1243)
4 PF09726 Macoilin: Transmembra 96.6 0.24 5.1E-06 55.3 20.1 127 229-362 426-576 (697)
5 TIGR00606 rad50 rad50. This fa 96.5 0.33 7.1E-06 57.1 21.5 128 284-419 838-968 (1311)
6 TIGR02169 SMC_prok_A chromosom 96.2 2.6 5.6E-05 47.4 25.3 9 27-35 35-43 (1164)
7 KOG0977 Nuclear envelope prote 96.2 0.75 1.6E-05 50.3 20.5 94 271-364 172-268 (546)
8 PF00038 Filament: Intermediat 96.1 1.5 3.2E-05 42.9 21.0 116 214-329 32-150 (312)
9 TIGR02169 SMC_prok_A chromosom 96.1 3.2 6.9E-05 46.7 26.0 7 41-47 27-33 (1164)
10 KOG0161 Myosin class II heavy 96.0 1.3 2.8E-05 54.6 23.5 90 230-319 966-1057(1930)
11 PF00038 Filament: Intermediat 96.0 1.7 3.7E-05 42.5 22.3 76 228-308 75-151 (312)
12 KOG0996 Structural maintenance 95.8 2.5 5.4E-05 50.0 23.6 178 240-417 332-515 (1293)
13 TIGR02168 SMC_prok_B chromosom 95.4 5.9 0.00013 44.3 25.9 13 235-247 684-696 (1179)
14 KOG0933 Structural maintenance 95.4 2.7 5.9E-05 49.0 21.6 175 226-408 739-919 (1174)
15 KOG0612 Rho-associated, coiled 95.1 4.1 8.8E-05 48.4 22.3 115 234-348 467-581 (1317)
16 PRK02224 chromosome segregatio 94.9 6.2 0.00014 44.0 22.7 33 398-430 425-459 (880)
17 COG1196 Smc Chromosome segrega 94.7 11 0.00025 44.1 24.8 36 377-412 462-498 (1163)
18 PHA02562 46 endonuclease subun 94.4 7.7 0.00017 40.7 20.6 48 312-359 257-306 (562)
19 COG1196 Smc Chromosome segrega 94.1 16 0.00034 43.0 24.7 59 208-266 668-726 (1163)
20 KOG0977 Nuclear envelope prote 94.0 12 0.00026 41.4 21.9 130 234-363 91-233 (546)
21 KOG0161 Myosin class II heavy 93.8 21 0.00045 44.7 25.3 112 229-347 1246-1359(1930)
22 KOG0933 Structural maintenance 93.6 19 0.00042 42.5 23.2 221 189-419 654-902 (1174)
23 PF07888 CALCOCO1: Calcium bin 93.0 17 0.00038 40.1 24.7 24 228-251 171-194 (546)
24 KOG0963 Transcription factor/C 92.8 2.4 5.1E-05 47.1 14.1 123 223-376 230-357 (629)
25 PRK11637 AmiB activator; Provi 92.4 12 0.00026 38.9 18.1 25 340-364 221-245 (428)
26 PRK02224 chromosome segregatio 92.0 24 0.00052 39.5 23.6 15 205-219 147-161 (880)
27 PF05615 THOC7: Tho complex su 91.2 6.5 0.00014 34.8 12.8 54 207-260 19-78 (139)
28 KOG0163 Myosin class VI heavy 91.0 14 0.00031 42.6 17.7 99 197-298 840-940 (1259)
29 PF09727 CortBP2: Cortactin-bi 90.2 3.9 8.4E-05 39.5 11.1 150 206-370 12-173 (192)
30 PRK09039 hypothetical protein; 90.1 25 0.00054 36.2 20.4 154 230-415 48-203 (343)
31 PF05701 WEMBL: Weak chloropla 89.9 32 0.0007 37.2 21.9 135 276-418 303-444 (522)
32 PRK03918 chromosome segregatio 89.7 38 0.00082 37.8 25.0 19 203-221 141-159 (880)
33 KOG0976 Rho/Rac1-interacting s 89.5 49 0.0011 38.8 21.2 121 240-361 250-384 (1265)
34 PF06705 SF-assemblin: SF-asse 89.1 23 0.00049 34.4 19.5 74 269-344 86-160 (247)
35 PF07798 DUF1640: Protein of u 88.3 21 0.00046 33.1 15.3 66 296-363 84-156 (177)
36 PF12128 DUF3584: Protein of u 88.0 66 0.0014 38.3 24.5 56 226-281 633-688 (1201)
37 KOG0996 Structural maintenance 87.7 48 0.001 39.9 19.3 62 308-369 505-566 (1293)
38 KOG0976 Rho/Rac1-interacting s 87.5 66 0.0014 37.8 22.2 80 298-377 272-365 (1265)
39 PF04111 APG6: Autophagy prote 86.4 6.6 0.00014 39.9 10.5 43 324-366 57-99 (314)
40 KOG0250 DNA repair protein RAD 85.8 21 0.00046 42.2 15.2 54 299-359 411-464 (1074)
41 KOG1103 Predicted coiled-coil 85.8 25 0.00054 37.6 14.4 166 226-419 105-293 (561)
42 KOG0239 Kinesin (KAR3 subfamil 84.8 59 0.0013 36.8 17.7 137 275-417 175-315 (670)
43 PF12718 Tropomyosin_1: Tropom 84.8 31 0.00067 31.5 18.0 93 230-327 2-104 (143)
44 PF07798 DUF1640: Protein of u 84.2 35 0.00077 31.7 13.6 93 228-324 58-152 (177)
45 TIGR00606 rad50 rad50. This fa 83.1 1.1E+02 0.0024 36.6 25.0 37 231-267 891-927 (1311)
46 PF09728 Taxilin: Myosin-like 82.8 60 0.0013 33.2 15.5 67 323-403 63-129 (309)
47 PF09731 Mitofilin: Mitochondr 82.7 75 0.0016 34.3 22.2 44 207-250 226-273 (582)
48 PF15035 Rootletin: Ciliary ro 82.0 48 0.001 31.6 17.7 92 227-330 15-122 (182)
49 PF01576 Myosin_tail_1: Myosin 81.8 0.34 7.4E-06 55.0 -0.9 143 208-357 673-818 (859)
50 PF10174 Cast: RIM-binding pro 81.0 1.1E+02 0.0025 35.3 20.6 111 299-413 241-375 (775)
51 PHA02562 46 endonuclease subun 80.7 80 0.0017 33.3 25.3 69 308-376 335-406 (562)
52 PF10174 Cast: RIM-binding pro 80.4 1.2E+02 0.0026 35.1 21.2 41 340-380 543-583 (775)
53 KOG0964 Structural maintenance 80.2 1.4E+02 0.0031 35.8 20.7 31 382-412 412-442 (1200)
54 PF10186 Atg14: UV radiation r 80.1 57 0.0012 31.2 15.3 70 340-410 72-141 (302)
55 KOG0982 Centrosomal protein Nu 79.5 35 0.00076 37.1 12.9 98 282-381 321-444 (502)
56 COG2433 Uncharacterized conser 78.9 85 0.0018 35.6 15.9 43 192-235 311-353 (652)
57 KOG4593 Mitotic checkpoint pro 78.5 1.3E+02 0.0029 34.5 18.1 207 196-416 348-573 (716)
58 PF10186 Atg14: UV radiation r 78.2 65 0.0014 30.8 18.3 19 278-296 73-91 (302)
59 PF00901 Orbi_VP5: Orbivirus o 78.1 34 0.00075 37.5 12.5 32 218-255 73-104 (508)
60 KOG0612 Rho-associated, coiled 77.3 1.8E+02 0.004 35.5 21.0 42 15-62 224-268 (1317)
61 TIGR01843 type_I_hlyD type I s 76.6 86 0.0019 31.3 20.9 25 389-413 247-271 (423)
62 KOG4674 Uncharacterized conser 76.5 2.2E+02 0.0049 36.1 20.1 113 262-397 1280-1393(1822)
63 PF04156 IncA: IncA protein; 76.2 63 0.0014 29.6 14.6 20 232-251 78-97 (191)
64 PF10168 Nup88: Nuclear pore c 75.6 1.5E+02 0.0031 34.0 17.0 31 294-328 634-664 (717)
65 PF06428 Sec2p: GDP/GTP exchan 75.3 9.1 0.0002 33.4 6.1 68 289-356 1-69 (100)
66 PF00261 Tropomyosin: Tropomyo 74.8 85 0.0018 30.4 19.4 135 229-370 93-229 (237)
67 PF13851 GAS: Growth-arrest sp 74.7 82 0.0018 30.2 18.1 59 305-363 57-118 (201)
68 PF12128 DUF3584: Protein of u 74.6 2E+02 0.0042 34.5 25.7 62 233-294 633-697 (1201)
69 KOG4787 Uncharacterized conser 74.1 61 0.0013 36.8 13.2 107 230-355 334-440 (852)
70 PF14931 IFT20: Intraflagellar 74.1 39 0.00084 30.4 9.9 80 333-416 22-108 (120)
71 PF05103 DivIVA: DivIVA protei 73.9 2.4 5.2E-05 36.4 2.2 103 255-367 20-122 (131)
72 PF01576 Myosin_tail_1: Myosin 73.7 1.1 2.3E-05 51.1 0.0 93 230-322 358-452 (859)
73 KOG4466 Component of histone d 73.4 1E+02 0.0023 31.8 13.7 21 250-270 17-37 (291)
74 PF14197 Cep57_CLD_2: Centroso 73.2 35 0.00075 27.9 8.6 61 228-293 5-65 (69)
75 TIGR03185 DNA_S_dndD DNA sulfu 72.4 1.6E+02 0.0035 32.5 22.4 12 284-295 302-313 (650)
76 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.4 70 0.0015 28.4 16.5 69 230-298 5-75 (132)
77 PRK00409 recombination and DNA 71.9 69 0.0015 36.6 13.5 93 198-292 486-587 (782)
78 TIGR01069 mutS2 MutS2 family p 71.0 54 0.0012 37.4 12.4 95 199-293 482-583 (771)
79 PF09730 BicD: Microtubule-ass 70.8 2E+02 0.0044 33.1 17.8 93 264-378 605-701 (717)
80 PRK04778 septation ring format 70.6 1.7E+02 0.0037 32.0 20.4 57 276-332 283-339 (569)
81 PF05701 WEMBL: Weak chloropla 70.4 1.7E+02 0.0036 31.9 24.5 11 105-115 66-76 (522)
82 PF05667 DUF812: Protein of un 70.1 1.9E+02 0.0041 32.4 18.7 22 392-413 458-479 (594)
83 KOG0994 Extracellular matrix g 70.1 2.8E+02 0.006 34.3 21.7 41 207-247 1471-1516(1758)
84 KOG0994 Extracellular matrix g 69.5 2.8E+02 0.0062 34.2 23.4 96 316-419 1653-1748(1758)
85 PF08317 Spc7: Spc7 kinetochor 68.3 1.4E+02 0.0031 30.3 16.7 50 280-332 182-231 (325)
86 KOG0995 Centromere-associated 68.2 2.1E+02 0.0046 32.2 16.7 149 205-371 430-579 (581)
87 KOG0250 DNA repair protein RAD 68.0 2.8E+02 0.006 33.5 22.5 36 230-265 276-311 (1074)
88 KOG4674 Uncharacterized conser 67.9 3.2E+02 0.007 34.8 18.4 136 283-421 1026-1203(1822)
89 TIGR02231 conserved hypothetic 67.4 67 0.0015 34.3 11.7 84 229-314 72-163 (525)
90 PRK04778 septation ring format 67.4 2E+02 0.0043 31.5 21.9 49 226-274 254-307 (569)
91 PTZ00266 NIMA-related protein 66.9 60 0.0013 38.5 11.9 15 103-117 268-282 (1021)
92 PF09727 CortBP2: Cortactin-bi 66.7 94 0.002 30.3 11.4 73 244-331 115-190 (192)
93 PF14197 Cep57_CLD_2: Centroso 66.6 49 0.0011 27.1 8.1 16 345-360 47-62 (69)
94 PRK14154 heat shock protein Gr 66.0 1.3E+02 0.0028 29.6 12.3 68 225-292 49-116 (208)
95 KOG3915 Transcription regulato 65.3 51 0.0011 36.4 10.2 58 231-307 510-567 (641)
96 KOG4807 F-actin binding protei 65.1 2.2E+02 0.0047 31.3 16.2 88 217-324 374-463 (593)
97 PF11559 ADIP: Afadin- and alp 65.0 1E+02 0.0022 27.5 14.5 44 205-248 29-72 (151)
98 PF06705 SF-assemblin: SF-asse 65.0 1.4E+02 0.003 29.0 21.6 60 257-316 13-76 (247)
99 PRK10884 SH3 domain-containing 64.6 1.2E+02 0.0025 29.6 11.6 24 227-250 92-115 (206)
100 KOG0993 Rab5 GTPase effector R 64.4 1.7E+02 0.0037 32.1 13.7 129 230-364 40-174 (542)
101 PRK04863 mukB cell division pr 63.8 3.7E+02 0.0081 33.5 22.4 19 341-359 393-411 (1486)
102 KOG1029 Endocytic adaptor prot 62.8 1.7E+02 0.0038 34.4 14.0 109 194-308 458-572 (1118)
103 cd07651 F-BAR_PombeCdc15_like 62.7 1.5E+02 0.0032 28.4 18.6 30 195-224 10-39 (236)
104 PF04849 HAP1_N: HAP1 N-termin 62.6 2E+02 0.0043 30.0 16.1 214 195-418 56-302 (306)
105 KOG0980 Actin-binding protein 62.1 3.3E+02 0.0072 32.4 22.5 43 306-348 434-476 (980)
106 cd07675 F-BAR_FNBP1L The F-BAR 61.8 1.8E+02 0.0039 29.2 14.0 13 370-382 215-227 (252)
107 PF05837 CENP-H: Centromere pr 61.8 1.1E+02 0.0023 26.6 11.0 41 275-315 3-43 (106)
108 PF04108 APG17: Autophagy prot 61.7 2.2E+02 0.0047 30.1 15.9 35 316-350 345-379 (412)
109 PF05010 TACC: Transforming ac 61.6 1.7E+02 0.0036 28.7 21.9 96 307-407 80-194 (207)
110 PF03245 Phage_lysis: Bacterio 61.0 60 0.0013 29.0 8.4 68 274-342 6-73 (125)
111 KOG0579 Ste20-like serine/thre 60.9 3.4E+02 0.0073 32.0 18.9 69 338-417 1101-1171(1187)
112 PRK03918 chromosome segregatio 60.9 2.8E+02 0.0061 31.1 25.2 7 41-47 27-33 (880)
113 TIGR00634 recN DNA repair prot 60.7 2.5E+02 0.0055 30.5 18.5 64 200-267 137-200 (563)
114 COG2433 Uncharacterized conser 60.3 1.2E+02 0.0026 34.4 12.1 25 272-296 471-495 (652)
115 KOG0971 Microtubule-associated 60.0 3.8E+02 0.0082 32.3 25.5 90 270-370 268-357 (1243)
116 PTZ00266 NIMA-related protein 59.7 1.6E+02 0.0034 35.2 13.5 9 109-117 229-237 (1021)
117 PF12325 TMF_TATA_bd: TATA ele 59.0 1.4E+02 0.003 26.9 13.6 40 228-267 23-62 (120)
118 KOG1853 LIS1-interacting prote 58.6 2.3E+02 0.005 29.4 16.1 46 223-268 40-85 (333)
119 PF14915 CCDC144C: CCDC144C pr 58.3 2.4E+02 0.0052 29.5 13.4 105 228-349 179-289 (305)
120 KOG4403 Cell surface glycoprot 57.5 69 0.0015 35.1 9.5 25 305-329 304-328 (575)
121 COG4717 Uncharacterized conser 57.2 4E+02 0.0088 31.8 24.2 96 200-297 153-248 (984)
122 PRK00409 recombination and DNA 57.0 3.6E+02 0.0077 31.1 15.7 19 255-273 515-533 (782)
123 PRK09174 F0F1 ATP synthase sub 56.5 1.9E+02 0.0042 27.8 13.4 74 287-360 89-164 (204)
124 COG1340 Uncharacterized archae 55.6 2.6E+02 0.0056 29.0 21.7 46 324-369 165-210 (294)
125 smart00498 FH2 Formin Homology 55.0 2.8E+02 0.006 29.2 13.4 115 229-343 311-431 (432)
126 KOG1962 B-cell receptor-associ 54.4 1.6E+02 0.0034 29.3 10.7 62 308-369 149-210 (216)
127 PF13863 DUF4200: Domain of un 54.3 1.4E+02 0.003 25.6 14.0 50 307-363 50-99 (126)
128 PRK14139 heat shock protein Gr 54.3 93 0.002 29.9 9.0 53 230-282 34-86 (185)
129 COG0419 SbcC ATPase involved i 54.3 4E+02 0.0086 30.8 24.1 15 284-298 568-582 (908)
130 cd07653 F-BAR_CIP4-like The F- 54.1 2E+02 0.0044 27.4 17.3 80 286-365 95-174 (251)
131 KOG4661 Hsp27-ERE-TATA-binding 54.0 1E+02 0.0022 35.0 10.3 14 324-337 663-676 (940)
132 PF09731 Mitofilin: Mitochondr 53.5 3.2E+02 0.007 29.5 20.7 21 233-253 249-269 (582)
133 PF15619 Lebercilin: Ciliary p 53.1 2.2E+02 0.0047 27.4 14.8 119 230-369 14-149 (194)
134 cd07652 F-BAR_Rgd1 The F-BAR ( 52.8 82 0.0018 30.7 8.5 51 280-343 91-141 (234)
135 KOG0288 WD40 repeat protein Ti 52.8 3.5E+02 0.0076 29.7 14.3 33 368-400 107-139 (459)
136 PF08317 Spc7: Spc7 kinetochor 52.5 2.7E+02 0.0058 28.3 17.2 116 197-324 78-194 (325)
137 PF15254 CCDC14: Coiled-coil d 52.1 4.2E+02 0.0091 31.2 14.8 98 277-384 382-495 (861)
138 PRK14158 heat shock protein Gr 51.7 1.4E+02 0.0031 28.9 9.9 57 225-281 37-93 (194)
139 PRK14145 heat shock protein Gr 51.6 1.1E+02 0.0024 29.7 9.1 64 228-291 45-108 (196)
140 KOG4572 Predicted DNA-binding 51.5 5E+02 0.011 31.2 18.4 51 372-426 1066-1116(1424)
141 PF06785 UPF0242: Uncharacteri 51.3 1.6E+02 0.0035 31.5 10.7 66 232-316 110-175 (401)
142 PRK14140 heat shock protein Gr 51.1 2.4E+02 0.0052 27.3 12.5 68 224-291 33-100 (191)
143 PF09763 Sec3_C: Exocyst compl 50.9 1.9E+02 0.0042 32.2 12.0 37 301-339 3-39 (701)
144 PF07200 Mod_r: Modifier of ru 50.5 1.8E+02 0.004 25.8 15.1 139 205-378 5-143 (150)
145 PF14942 Muted: Organelle biog 50.1 2.1E+02 0.0047 26.5 14.8 54 255-308 20-75 (145)
146 TIGR01069 mutS2 MutS2 family p 49.9 4.6E+02 0.0099 30.2 15.4 17 255-271 510-526 (771)
147 COG4942 Membrane-bound metallo 49.8 3.8E+02 0.0082 29.2 22.7 31 330-360 146-176 (420)
148 PRK14156 heat shock protein Gr 48.9 91 0.002 29.8 8.0 39 232-270 31-69 (177)
149 PF08614 ATG16: Autophagy prot 48.8 2.3E+02 0.0051 26.5 11.9 88 225-317 99-186 (194)
150 PF05615 THOC7: Tho complex su 48.4 2E+02 0.0042 25.5 11.1 58 303-360 46-103 (139)
151 PRK14146 heat shock protein Gr 47.2 1.3E+02 0.0029 29.5 9.0 63 230-292 56-118 (215)
152 PRK14147 heat shock protein Gr 47.1 1.3E+02 0.0028 28.5 8.6 46 228-273 18-63 (172)
153 KOG3433 Protein involved in me 46.9 2.2E+02 0.0047 28.2 10.1 80 303-382 81-168 (203)
154 PF10473 CENP-F_leu_zip: Leuci 46.6 2.4E+02 0.0053 26.1 17.2 35 230-264 12-46 (140)
155 TIGR01000 bacteriocin_acc bact 46.5 3.8E+02 0.0082 28.3 20.8 25 229-253 98-122 (457)
156 TIGR02977 phageshock_pspA phag 46.4 2.7E+02 0.0059 26.7 19.1 103 230-360 33-135 (219)
157 PF11559 ADIP: Afadin- and alp 46.3 2.2E+02 0.0047 25.5 12.3 110 225-359 35-147 (151)
158 PRK14143 heat shock protein Gr 45.9 3.2E+02 0.007 27.3 12.2 62 229-290 68-129 (238)
159 PF10473 CENP-F_leu_zip: Leuci 45.5 2.5E+02 0.0055 26.0 14.2 37 229-265 25-61 (140)
160 PF08647 BRE1: BRE1 E3 ubiquit 45.3 1.9E+02 0.0042 24.6 12.1 85 240-329 11-95 (96)
161 PF08549 SWI-SNF_Ssr4: Fungal 45.3 28 0.00061 39.4 4.5 86 334-419 360-465 (669)
162 PF14915 CCDC144C: CCDC144C pr 44.8 3.9E+02 0.0085 28.0 21.3 86 230-315 8-107 (305)
163 TIGR03185 DNA_S_dndD DNA sulfu 44.7 4.8E+02 0.01 29.0 19.5 28 239-266 388-415 (650)
164 PF02970 TBCA: Tubulin binding 44.4 1.7E+02 0.0038 24.8 8.2 75 337-420 6-80 (90)
165 PRK14151 heat shock protein Gr 44.2 2.9E+02 0.0063 26.3 11.7 64 227-290 19-82 (176)
166 PLN03188 kinesin-12 family pro 43.4 7.4E+02 0.016 30.8 18.4 37 220-256 1057-1093(1320)
167 KOG1029 Endocytic adaptor prot 43.0 6.5E+02 0.014 30.1 21.1 62 300-361 445-509 (1118)
168 PRK10929 putative mechanosensi 43.0 7E+02 0.015 30.4 21.4 64 225-293 170-233 (1109)
169 PF06428 Sec2p: GDP/GTP exchan 41.7 1.3E+02 0.0029 26.3 7.2 63 236-316 2-64 (100)
170 cd07598 BAR_FAM92 The Bin/Amph 41.6 3.4E+02 0.0074 26.4 19.6 120 207-341 42-164 (211)
171 TIGR03752 conj_TIGR03752 integ 41.3 3.1E+02 0.0068 30.2 11.4 59 230-296 61-119 (472)
172 cd07657 F-BAR_Fes_Fer The F-BA 41.3 3.6E+02 0.0078 26.5 13.9 39 294-332 103-141 (237)
173 PF09636 XkdW: XkdW protein; 41.1 8.9 0.00019 34.3 0.0 38 283-320 66-103 (108)
174 cd07658 F-BAR_NOSTRIN The F-BA 41.1 3.5E+02 0.0076 26.4 14.7 116 227-343 79-219 (239)
175 PF02185 HR1: Hr1 repeat; Int 40.6 1.1E+02 0.0025 24.1 6.2 22 284-305 3-24 (70)
176 PF05911 DUF869: Plant protein 40.4 6.6E+02 0.014 29.3 18.7 77 229-314 25-107 (769)
177 PF07083 DUF1351: Protein of u 40.4 3.1E+02 0.0066 26.6 10.2 57 277-333 44-108 (215)
178 KOG2072 Translation initiation 40.3 7.2E+02 0.016 29.7 17.8 32 264-295 715-746 (988)
179 PF01025 GrpE: GrpE; InterPro 40.2 1E+02 0.0022 27.7 6.6 44 230-273 13-56 (165)
180 PF05837 CENP-H: Centromere pr 39.1 2.6E+02 0.0056 24.3 9.3 28 321-348 62-89 (106)
181 PF13935 Ead_Ea22: Ead/Ea22-li 39.1 2.7E+02 0.0059 25.1 9.1 17 333-349 121-137 (139)
182 KOG0804 Cytoplasmic Zn-finger 39.1 5.8E+02 0.013 28.3 14.3 65 234-312 346-412 (493)
183 COG3524 KpsE Capsule polysacch 38.8 65 0.0014 33.9 5.7 52 195-250 194-245 (372)
184 PRK14148 heat shock protein Gr 38.8 2.3E+02 0.0049 27.6 9.0 68 229-324 41-108 (195)
185 PF14523 Syntaxin_2: Syntaxin- 38.8 2.2E+02 0.0048 23.4 9.0 35 295-329 63-97 (102)
186 PF14712 Snapin_Pallidin: Snap 38.7 2.2E+02 0.0047 23.3 10.2 77 227-310 6-82 (92)
187 KOG0964 Structural maintenance 38.5 8.2E+02 0.018 29.9 22.7 91 232-326 255-351 (1200)
188 PRK04654 sec-independent trans 38.4 2.4E+02 0.0052 28.1 9.2 59 303-369 27-85 (214)
189 PRK01156 chromosome segregatio 37.8 6.7E+02 0.014 28.6 24.1 16 205-220 147-162 (895)
190 PF05667 DUF812: Protein of un 37.8 6.4E+02 0.014 28.4 17.5 41 229-269 329-369 (594)
191 KOG1899 LAR transmembrane tyro 37.5 7.2E+02 0.016 29.0 17.0 120 291-414 162-307 (861)
192 PF15035 Rootletin: Ciliary ro 36.9 3.3E+02 0.007 26.1 9.7 68 208-277 61-130 (182)
193 PRK14155 heat shock protein Gr 36.8 2E+02 0.0043 28.2 8.4 40 231-270 16-55 (208)
194 PF09744 Jnk-SapK_ap_N: JNK_SA 36.4 3.7E+02 0.008 25.3 12.9 74 202-277 3-78 (158)
195 PF05700 BCAS2: Breast carcino 35.6 4.1E+02 0.009 25.6 17.1 108 228-350 97-208 (221)
196 PF09787 Golgin_A5: Golgin sub 35.4 6.1E+02 0.013 27.5 21.4 17 353-369 275-291 (511)
197 PRK13454 F0F1 ATP synthase sub 35.4 3.8E+02 0.0082 25.1 14.1 74 287-360 67-142 (181)
198 KOG0163 Myosin class VI heavy 34.7 8.8E+02 0.019 29.1 15.3 24 324-347 1001-1024(1259)
199 COG4477 EzrA Negative regulato 34.7 7.2E+02 0.016 28.2 15.6 151 195-358 240-402 (570)
200 PRK14162 heat shock protein Gr 34.5 4.4E+02 0.0096 25.6 12.1 55 228-282 39-93 (194)
201 PRK14153 heat shock protein Gr 34.5 4.4E+02 0.0096 25.6 10.7 43 230-272 35-77 (194)
202 PF13935 Ead_Ea22: Ead/Ea22-li 34.4 3.5E+02 0.0076 24.4 10.1 24 227-250 66-89 (139)
203 PF09036 Bcr-Abl_Oligo: Bcr-Ab 34.4 1E+02 0.0022 26.3 5.2 42 230-271 28-69 (79)
204 PF10267 Tmemb_cc2: Predicted 34.2 5.6E+02 0.012 27.6 11.8 40 321-363 248-287 (395)
205 PF05529 Bap31: B-cell recepto 34.1 1.6E+02 0.0035 27.3 7.1 19 350-368 173-191 (192)
206 PF09755 DUF2046: Uncharacteri 33.7 5.8E+02 0.013 26.8 22.3 142 200-363 16-167 (310)
207 PF01442 Apolipoprotein: Apoli 33.5 3.2E+02 0.007 23.7 18.8 15 336-350 135-149 (202)
208 COG4942 Membrane-bound metallo 33.4 6.7E+02 0.015 27.4 18.8 103 228-331 66-178 (420)
209 PF05622 HOOK: HOOK protein; 33.4 16 0.00035 40.7 0.4 179 202-414 139-320 (713)
210 KOG4348 Adaptor protein CMS/SE 33.4 1.5E+02 0.0032 32.8 7.5 56 234-311 568-623 (627)
211 KOG4364 Chromatin assembly fac 33.4 8.5E+02 0.018 28.5 15.4 68 265-333 270-337 (811)
212 COG1579 Zn-ribbon protein, pos 33.2 5.2E+02 0.011 26.0 18.2 167 199-375 2-168 (239)
213 PF13863 DUF4200: Domain of un 33.2 3.1E+02 0.0067 23.4 16.0 109 233-342 12-120 (126)
214 PF07106 TBPIP: Tat binding pr 33.1 3.8E+02 0.0082 24.4 10.3 45 226-270 70-114 (169)
215 PF11855 DUF3375: Protein of u 33.1 4.5E+02 0.0098 28.4 11.1 104 207-316 100-216 (478)
216 KOG3915 Transcription regulato 33.0 4.9E+02 0.011 29.2 11.2 47 285-338 531-577 (641)
217 PRK14161 heat shock protein Gr 32.5 3.1E+02 0.0068 26.2 8.8 23 303-325 66-88 (178)
218 TIGR01000 bacteriocin_acc bact 32.5 6.2E+02 0.013 26.7 19.0 8 109-116 32-39 (457)
219 PF15236 CCDC66: Coiled-coil d 32.2 4.5E+02 0.0097 25.0 10.9 68 260-339 61-128 (157)
220 KOG2264 Exostosin EXT1L [Signa 31.6 2.4E+02 0.0052 32.3 8.8 23 343-365 105-127 (907)
221 KOG4460 Nuclear pore complex, 31.4 5.3E+02 0.012 29.5 11.3 57 323-379 601-657 (741)
222 PF05911 DUF869: Plant protein 31.3 9.1E+02 0.02 28.3 18.0 128 226-360 587-716 (769)
223 PF09798 LCD1: DNA damage chec 30.9 1.5E+02 0.0032 33.9 7.2 49 241-297 3-51 (654)
224 KOG0980 Actin-binding protein 30.6 1E+03 0.022 28.7 21.5 33 229-261 366-398 (980)
225 PRK10884 SH3 domain-containing 30.6 5.2E+02 0.011 25.2 11.3 28 301-328 137-164 (206)
226 KOG0239 Kinesin (KAR3 subfamil 30.6 8.7E+02 0.019 27.8 15.7 41 226-266 180-220 (670)
227 PF02841 GBP_C: Guanylate-bind 29.8 5.8E+02 0.012 25.5 12.1 21 324-344 204-224 (297)
228 KOG0249 LAR-interacting protei 29.7 1E+03 0.022 28.3 16.3 67 320-392 219-285 (916)
229 PF04156 IncA: IncA protein; 29.6 4.4E+02 0.0096 24.1 15.3 14 351-364 164-177 (191)
230 PRK04863 mukB cell division pr 29.4 1.2E+03 0.027 29.2 22.6 66 299-365 303-368 (1486)
231 PF11262 Tho2: Transcription f 29.4 1.5E+02 0.0033 29.9 6.5 52 230-281 48-100 (298)
232 PRK14144 heat shock protein Gr 29.1 3.9E+02 0.0084 26.2 8.9 42 230-271 47-88 (199)
233 PF13801 Metal_resist: Heavy-m 29.0 2.3E+02 0.0051 22.8 6.5 65 228-296 59-123 (125)
234 PF06005 DUF904: Protein of un 28.9 3.3E+02 0.0072 22.5 7.7 55 225-287 15-69 (72)
235 PRK00106 hypothetical protein; 28.9 8.6E+02 0.019 27.2 16.7 131 237-371 48-181 (535)
236 PRK11281 hypothetical protein; 28.8 6.9E+02 0.015 30.4 12.4 62 227-293 191-252 (1113)
237 KOG1103 Predicted coiled-coil 28.5 8E+02 0.017 26.8 18.2 20 336-355 243-262 (561)
238 KOG0247 Kinesin-like protein [ 28.2 1E+03 0.023 28.0 13.3 95 264-362 497-591 (809)
239 PRK14141 heat shock protein Gr 28.2 3.4E+02 0.0073 26.7 8.4 41 233-273 36-76 (209)
240 cd07673 F-BAR_FCHO2 The F-BAR 28.2 6.1E+02 0.013 25.3 16.2 43 297-343 155-198 (269)
241 cd07674 F-BAR_FCHO1 The F-BAR 27.9 5.9E+02 0.013 25.0 19.7 12 408-419 237-248 (261)
242 PF13851 GAS: Growth-arrest sp 27.4 5.6E+02 0.012 24.6 22.2 184 205-419 10-195 (201)
243 KOG2002 TPR-containing nuclear 27.4 1.2E+03 0.026 28.4 16.1 75 203-288 712-786 (1018)
244 PF09304 Cortex-I_coil: Cortex 27.3 4.7E+02 0.01 23.6 14.1 71 228-303 16-86 (107)
245 cd07648 F-BAR_FCHO The F-BAR ( 27.3 5.8E+02 0.013 24.7 18.7 25 200-224 15-39 (261)
246 PRK12704 phosphodiesterase; Pr 27.0 8.8E+02 0.019 26.7 17.0 11 238-248 34-44 (520)
247 PF04977 DivIC: Septum formati 27.0 2E+02 0.0043 22.3 5.5 35 227-261 16-50 (80)
248 PF06632 XRCC4: DNA double-str 26.7 6.2E+02 0.013 26.6 10.5 47 320-366 161-208 (342)
249 PF15070 GOLGA2L5: Putative go 26.5 9.9E+02 0.021 27.1 24.7 134 225-358 76-215 (617)
250 PF03962 Mnd1: Mnd1 family; I 26.4 5.7E+02 0.012 24.3 12.1 18 348-365 131-148 (188)
251 PLN03229 acetyl-coenzyme A car 26.3 6.7E+02 0.015 29.4 11.3 13 282-294 462-474 (762)
252 PF02183 HALZ: Homeobox associ 26.3 1.5E+02 0.0033 22.4 4.5 35 336-370 3-37 (45)
253 PRK04654 sec-independent trans 26.1 3.3E+02 0.0072 27.2 7.9 46 283-329 42-87 (214)
254 COG0419 SbcC ATPase involved i 26.0 1.1E+03 0.023 27.4 25.5 39 376-414 397-436 (908)
255 COG1842 PspA Phage shock prote 25.8 6.6E+02 0.014 24.9 14.1 109 229-358 32-140 (225)
256 KOG0241 Kinesin-like protein [ 25.8 1.6E+02 0.0035 35.6 6.5 63 339-417 358-429 (1714)
257 PF15397 DUF4618: Domain of un 25.6 7.3E+02 0.016 25.3 12.8 101 244-366 126-228 (258)
258 smart00787 Spc7 Spc7 kinetocho 25.5 7.6E+02 0.016 25.5 16.1 126 227-370 139-264 (312)
259 cd07673 F-BAR_FCHO2 The F-BAR 25.4 6.8E+02 0.015 24.9 21.1 51 213-266 3-53 (269)
260 COG5245 DYN1 Dynein, heavy cha 25.4 8.9E+02 0.019 31.8 12.5 119 299-419 2162-2345(3164)
261 PLN02372 violaxanthin de-epoxi 25.3 9.1E+02 0.02 26.7 11.5 61 276-339 374-437 (455)
262 PF14932 HAUS-augmin3: HAUS au 24.9 6.8E+02 0.015 24.7 12.2 79 277-358 70-148 (256)
263 PF10146 zf-C4H2: Zinc finger- 24.8 6.9E+02 0.015 24.8 13.9 15 282-296 35-49 (230)
264 PTZ00121 MAEBL; Provisional 24.5 1.6E+03 0.035 29.0 19.5 18 333-350 1218-1235(2084)
265 TIGR02680 conserved hypothetic 24.4 1.4E+03 0.03 28.2 23.6 180 230-413 751-953 (1353)
266 KOG4571 Activating transcripti 24.4 3.2E+02 0.007 28.4 7.8 37 326-362 243-279 (294)
267 KOG0962 DNA repair protein RAD 24.2 1.5E+03 0.032 28.4 22.4 98 318-415 914-1028(1294)
268 PF13514 AAA_27: AAA domain 24.2 1.3E+03 0.027 27.6 23.8 30 235-264 618-647 (1111)
269 PRK10698 phage shock protein P 24.1 6.8E+02 0.015 24.4 10.9 85 280-370 29-131 (222)
270 PF08172 CASP_C: CASP C termin 24.1 7.4E+02 0.016 24.8 10.3 32 335-366 97-128 (248)
271 PRK01919 tatB sec-independent 24.0 3.6E+02 0.0078 26.0 7.5 16 279-294 38-53 (169)
272 PF09730 BicD: Microtubule-ass 23.9 1.2E+03 0.026 27.2 19.9 103 300-417 73-185 (717)
273 KOG4348 Adaptor protein CMS/SE 23.8 1.4E+02 0.003 33.1 5.2 48 342-397 573-624 (627)
274 PRK14163 heat shock protein Gr 23.4 7.4E+02 0.016 24.6 12.0 63 230-292 42-104 (214)
275 PF04871 Uso1_p115_C: Uso1 / p 23.4 5.7E+02 0.012 23.3 10.9 38 340-379 57-95 (136)
276 COG3937 Uncharacterized conser 23.3 5.6E+02 0.012 23.2 8.9 51 238-288 24-78 (108)
277 KOG3612 PHD Zn-finger protein 23.2 5.9E+02 0.013 28.9 9.9 37 295-331 463-503 (588)
278 PRK15178 Vi polysaccharide exp 22.9 3.5E+02 0.0075 29.5 8.0 48 203-250 258-308 (434)
279 PRK12704 phosphodiesterase; Pr 22.7 1.1E+03 0.023 26.1 16.7 12 283-294 65-76 (520)
280 PF11932 DUF3450: Protein of u 22.5 7.2E+02 0.016 24.1 14.4 109 227-350 13-121 (251)
281 KOG0288 WD40 repeat protein Ti 22.5 1.1E+03 0.023 26.1 14.5 32 310-341 100-131 (459)
282 cd07652 F-BAR_Rgd1 The F-BAR ( 22.3 7.3E+02 0.016 24.2 18.3 127 277-413 60-197 (234)
283 cd04779 HTH_MerR-like_sg4 Heli 22.3 1.7E+02 0.0037 26.4 4.8 51 192-252 48-98 (134)
284 PF04778 LMP: LMP repeated reg 22.2 7E+02 0.015 23.9 9.7 72 234-306 71-146 (157)
285 PRK09174 F0F1 ATP synthase sub 22.2 7.2E+02 0.016 24.0 17.3 78 205-294 62-139 (204)
286 PRK09039 hypothetical protein; 22.2 8.9E+02 0.019 25.1 18.9 34 384-417 154-187 (343)
287 PF09738 DUF2051: Double stran 21.7 9.1E+02 0.02 25.0 10.7 38 336-373 124-161 (302)
288 PRK14157 heat shock protein Gr 21.7 5E+02 0.011 26.0 8.3 38 232-269 81-118 (227)
289 PF11172 DUF2959: Protein of u 21.6 1.9E+02 0.0041 28.6 5.3 44 222-265 157-200 (201)
290 KOG4673 Transcription factor T 21.2 1.4E+03 0.031 27.1 19.8 164 233-417 344-510 (961)
291 PRK14147 heat shock protein Gr 21.0 7.2E+02 0.016 23.6 10.0 16 332-348 71-86 (172)
292 PRK13454 F0F1 ATP synthase sub 20.9 7E+02 0.015 23.4 15.7 80 234-319 57-136 (181)
293 PF06295 DUF1043: Protein of u 20.9 2.3E+02 0.0051 25.3 5.4 39 230-268 27-65 (128)
294 KOG1265 Phospholipase C [Lipid 20.7 1.1E+03 0.023 28.8 11.6 102 242-355 1075-1176(1189)
295 PRK14160 heat shock protein Gr 20.6 8.3E+02 0.018 24.1 12.3 51 230-280 63-113 (211)
296 PF06785 UPF0242: Uncharacteri 20.5 1.1E+03 0.024 25.5 17.4 76 287-362 90-172 (401)
297 TIGR01005 eps_transp_fam exopo 20.4 1.2E+03 0.027 26.1 17.4 65 295-362 319-386 (754)
298 PF06818 Fez1: Fez1; InterPro 20.4 8.4E+02 0.018 24.1 17.9 103 301-412 82-197 (202)
299 PF04837 MbeB_N: MbeB-like, N- 20.2 3.7E+02 0.008 21.3 5.7 36 292-327 10-45 (52)
300 KOG1656 Protein involved in gl 20.1 9E+02 0.019 24.3 14.4 94 254-348 33-152 (221)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.45 E-value=0.037 Score=61.50 Aligned_cols=68 Identities=31% Similarity=0.367 Sum_probs=58.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL 304 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~l 304 (433)
..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+- .+-.+|..|||.|+..|.-
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r~~ee~~ 524 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKARKEEEEK 524 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhHHHHh
Confidence 4446688999999999999999999999999999999999999986543 3677899999999998763
No 2
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.96 E-value=0.47 Score=51.83 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=63.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhhcc----cHHHHHHHHHHhHHHHHHH-HHhHHH
Q 013958 301 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIE-QVCDELARDIND----DKSEVEELKRESAIALEEV-EKEREM 374 (433)
Q Consensus 301 ~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE-~vCdELAk~I~e----~kaEve~lKres~k~~eE~-eeER~M 374 (433)
++.-+-.|++||+++...=.+.+.||-.-|-.-.=|. .+|| .+-.+++ ...|...|.+..+..++++ +-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455567788888887777777777776664322222 2232 2223333 2333344444334443444 234556
Q ss_pred HHHhHhhhHHhhh----------------hhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 013958 375 IQVADVLREERAQ----------------IKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 375 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~ldkL~~elE~FL~s 417 (433)
.++++...|||.+ +.|+|++-.|.|+.+.+-.++-|=|-+...
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E 439 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666653 567777777777777666555555555443
No 3
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.78 E-value=0.19 Score=57.66 Aligned_cols=174 Identities=26% Similarity=0.359 Sum_probs=125.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH---------HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 013958 224 SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISY---------LMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294 (433)
Q Consensus 224 ~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~---------l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~E 294 (433)
+--|--+.-|+-||.+||...++++.-+..++.+|++ |=|.+||||+.-=--|-+-.+..|++|-.+||-=
T Consensus 272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999999999999998888877777655 4588999999888888888888888888777653
Q ss_pred HH---------------HhhhHHHHhHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHH
Q 013958 295 RK---------------LRRRFESLNKKLGKEL-------AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKS 352 (433)
Q Consensus 295 Rk---------------~Rrr~E~ln~KL~~EL-------aE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~ka 352 (433)
|- --+++|.-|.||-.-| +..|.-..++.+++|+-+-.-.-|+.+-.-|-+.|...+.
T Consensus 352 KaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 352 KAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAES 431 (1243)
T ss_pred HHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2478999999997766 4556677788889988888888888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 353 EVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 353 Eve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
-|-.|+..-+.+. --|-.+-| |+|-++.||+|.-.|+.-+.|||+
T Consensus 432 ~iadlkEQVDAAl---GAE~MV~q-------------LtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 432 TIADLKEQVDAAL---GAEEMVEQ-------------LTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHHHHHHHHhh---cHHHHHHH-------------HHhhccCHHHHHHHHHHHHHHHHH
Confidence 8888886644332 22333333 444444555555555544444444
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.58 E-value=0.24 Score=55.31 Aligned_cols=127 Identities=21% Similarity=0.297 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhh-------chHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 013958 229 LVSALHAELERARLQVNQLIQE-------QRS-------DQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E-------~~s-------~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~E 294 (433)
=|+.|++||..+|..=.||-.. .+. .+++.|.|..++.+=. +.+++=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3677888888777655555444 222 2333444444443332 22333456788888889999
Q ss_pred HHHhhhHHHHhH--HHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 013958 295 RKLRRRFESLNK--KLGKELAETKHSLLKAV--------KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA 362 (433)
Q Consensus 295 Rk~Rrr~E~ln~--KL~~ELaE~K~s~~~al--------kelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~ 362 (433)
++.|..+|.-=. |=++--+|.++ .+++ .--|.=|..+.=||.-|+.|-+++..-+..+..|..+..
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~a--ar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKA--ARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhh--hhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988875311 11111111111 1110 111223444455666666666666655555555555543
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.48 E-value=0.33 Score=57.06 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred HHHHHHHhHHHHHHhhhHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 284 IESIAGELEVERKLRRRFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 284 i~slk~ELe~ERk~Rrr~E~ln~KL---~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
+..+..+++.-.......+.--..| -.++.+.+..+.+.++....-...-+-+...+.++...|.+.+.+++.+..+
T Consensus 838 l~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3333333333344444444444444 4567777777777776655555555556666677777777777777777776
Q ss_pred hHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958 361 SAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 361 s~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~ 419 (433)
..++..+.+.-+.-... .++..|.++ ..|......+..+..+|+.|+....
T Consensus 918 ~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 918 LEKDQQEKEELISSKET----SNKKAQDKV----NDIKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66665554443322222 235555555 3455666788888889998887654
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.16 E-value=2.6 Score=47.42 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.2
Q ss_pred CchhhHhhh
Q 013958 27 STSSIVQNY 35 (433)
Q Consensus 27 ~ss~~~~~~ 35 (433)
|=|.|+--.
T Consensus 35 GKS~ildAi 43 (1164)
T TIGR02169 35 GKSNIGDAI 43 (1164)
T ss_pred CHHHHHHHH
Confidence 445554433
No 7
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.15 E-value=0.75 Score=50.30 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=71.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhhh
Q 013958 271 AWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA---RVVIEQVCDELARDI 347 (433)
Q Consensus 271 ~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka---RellE~vCdELAk~I 347 (433)
..=.+|-.+|...|..++.+|++|.-+|...+.-..=|-.||.-.+...+..+.|+-.-... -..=+..-+||+.-|
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai 251 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAI 251 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999998888777766554322211 123466778899999
Q ss_pred cccHHHHHHHHHHhHHH
Q 013958 348 NDDKSEVEELKRESAIA 364 (433)
Q Consensus 348 ~e~kaEve~lKres~k~ 364 (433)
.|.+++-+...+...+.
T Consensus 252 ~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 252 REIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 98888888776655543
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.14 E-value=1.5 Score=42.92 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=75.6
Q ss_pred HhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHHHHH
Q 013958 214 NRMWGQEDRPSSSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE--KAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 214 nriw~leeq~~s~~S-lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE--k~~wK~KE~eki~aai~slk~E 290 (433)
..|+.+.+.....++ +-.....||..+|..|..+..++....-+++.+...+.+= |.......+..+..-|..++.+
T Consensus 32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345555555333333 6677888888888888888877766666655554444442 2222245567777888889999
Q ss_pred hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958 291 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 329 (433)
Q Consensus 291 Le~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~E 329 (433)
|+.+-..|-.+|.--.-|-.||.-.+....+-+.+|...
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 999999998888888888888887777666656655543
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.14 E-value=3.2 Score=46.69 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=3.3
Q ss_pred eeecccc
Q 013958 41 ILIGKRG 47 (433)
Q Consensus 41 ilvgkrg 47 (433)
+++|.-|
T Consensus 27 ~i~G~NG 33 (1164)
T TIGR02169 27 VISGPNG 33 (1164)
T ss_pred EEECCCC
Confidence 4445444
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.02 E-value=1.3 Score=54.57 Aligned_cols=90 Identities=26% Similarity=0.384 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
|+.|..|+..-+.+|..|.+|++.-...+.++.-.+ .+|++.--+|...++...|+++...|+.|++.|..+|...+|
T Consensus 966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555444455554444 456777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013958 308 LGKELAETKHSL 319 (433)
Q Consensus 308 L~~ELaE~K~s~ 319 (433)
|.-||...+.+.
T Consensus 1046 le~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1046 LEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHhhhHH
Confidence 998886555443
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.01 E-value=1.7 Score=42.50 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNK 306 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr-~E~ln~ 306 (433)
.-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-++ +..+...|+.+++||++-++.... ++.|-.
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 34677778888888888888888888888888888888877765 555666788888888887665443 444443
Q ss_pred HH
Q 013958 307 KL 308 (433)
Q Consensus 307 KL 308 (433)
++
T Consensus 150 ~~ 151 (312)
T PF00038_consen 150 QI 151 (312)
T ss_dssp T-
T ss_pred cc
Confidence 33
No 12
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=2.5 Score=49.96 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHhHHHHH--HhhhhH-HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 013958 240 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--AWKNKE-REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 316 (433)
Q Consensus 240 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~--~wK~KE-~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K 316 (433)
.++.|-+...+......++...-.++.-+.- +-|... +..|+.....++...+..++-++.+|.-+.++--.|.-+.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555552222 222333 3347777888888889999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHH-HhHhhhHH--hhhhhhhHh
Q 013958 317 HSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQ-VADVLREE--RAQIKLSEA 393 (433)
Q Consensus 317 ~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLq-mAEvWREE--RVQMKL~eA 393 (433)
+-++++.+++|+.++...-+|..-...-..|.+...|++.|.....+...++++...-|. =++..++| ..|-.|+..
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888888888888877766666666665544442 24444443 345556666
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh
Q 013958 394 KYQLEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 394 k~~leeK~s~ldkL~~elE~FL~s 417 (433)
...+-+.-+.++-...||+-.+..
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655543
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.41 E-value=5.9 Score=44.33 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 013958 235 AELERARLQVNQL 247 (433)
Q Consensus 235 ~EL~~Ar~~I~eL 247 (433)
.+++.++..+.++
T Consensus 684 ~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 684 EKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 14
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=2.7 Score=49.04 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=105.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN 305 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln 305 (433)
...-+..+..++..++.+|++...-.+....+|.-+=+.+.+.+..+.++-.| ...-|+.++..++..++-=++.|..-
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777776666666666666666666555544443333 33456667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhH------
Q 013958 306 KKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD------ 379 (433)
Q Consensus 306 ~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAE------ 379 (433)
.+|.-|..+.+.+....-+.|+ -++.-|+.|..+|++.++.|.....+..++..|+.++..++.=-+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 7777777776665555444443 356667777777777777777777777777777766655543222
Q ss_pred hhhHHhhhhhhhHhhhhhhhhhHHHHHHH
Q 013958 380 VLREERAQIKLSEAKYQLEEKNAAVDKLR 408 (433)
Q Consensus 380 vWREERVQMKL~eAk~~leeK~s~ldkL~ 408 (433)
.=..|-.+-+..+-++...++.-.++++.
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence 11223334444444444444444444443
No 15
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.12 E-value=4.1 Score=48.41 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa 313 (433)
-.||+.+..+++-.+.|.+..+..+-.---+..+++++-...+..++.+-|..+++||++..+-..++-.-+.|+..+..
T Consensus 467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk 546 (1317)
T KOG0612|consen 467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK 546 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566555555444444443111111111123345555555667888999999999999999999998888999998888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013958 314 ETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 348 (433)
Q Consensus 314 E~K~s~~~alkelE~ERkaRellE~vCdELAk~I~ 348 (433)
+...+..-+.-+.+.+.+-+...++.|..+-....
T Consensus 547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 88888888888999999999999999998766544
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=94.95 E-value=6.2 Score=44.05 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcc--Ccccchhhhc
Q 013958 398 EEKNAAVDKLRSQLEAFSRNQKG--KRKRTQFCKS 430 (433)
Q Consensus 398 eeK~s~ldkL~~elE~FL~sk~~--~~~~~~~~~~ 430 (433)
.++...+......++.+|..-.. ....-|.|..
T Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r 459 (880)
T PRK02224 425 REREAELEATLRTARERVEEAEALLEAGKCPECGQ 459 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 34455555555566666665442 2334466653
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.67 E-value=11 Score=44.11 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=18.2
Q ss_pred HhHhhhH-HhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958 377 VADVLRE-ERAQIKLSEAKYQLEEKNAAVDKLRSQLE 412 (433)
Q Consensus 377 mAEvWRE-ERVQMKL~eAk~~leeK~s~ldkL~~elE 412 (433)
+.+.|++ ...|.++.++...+......++.|....+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455554 34555555555555555555555554433
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.36 E-value=7.7 Score=40.74 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHhhhcccHHHHHHHHH
Q 013958 312 LAETKHSLLKAVKDLDTEKRARVVIEQ--VCDELARDINDDKSEVEELKR 359 (433)
Q Consensus 312 LaE~K~s~~~alkelE~ERkaRellE~--vCdELAk~I~e~kaEve~lKr 359 (433)
|.+++.....+-.+++.-.+....++. .|.---+.+.+....+..|..
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d 306 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKD 306 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHH
Confidence 444555555555566655666666644 554444444444333444333
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.10 E-value=16 Score=43.04 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 208 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 208 ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
+|.....+|-.+..+-.....-+..++.++..+...+.++.......+.+++.+-..++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445556667777777777777776666666666666665555
No 20
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.01 E-value=12 Score=41.35 Aligned_cols=130 Identities=24% Similarity=0.305 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHH------H---HHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE------V---VEAAIESIAGELEVERKLRRRFESL 304 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~e------k---i~aai~slk~ELe~ERk~Rrr~E~l 304 (433)
.+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.++++ + ....+-.+.+|+.-=++-.+.+|.-
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333333221 1 2345667777777777777888888
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh----cccHHHHHHHHHHhHH
Q 013958 305 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI----NDDKSEVEELKRESAI 363 (433)
Q Consensus 305 n~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I----~e~kaEve~lKres~k 363 (433)
...|.+|..-....+..+.++|+.|.-.|.-++.=|..|-.+| ..++.||+++++...+
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR 233 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 8888888888888888888999999988888888887776665 4566777777665443
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.85 E-value=21 Score=44.72 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK--AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk--~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
.++.|+..++.-..++.+|..-.....+++..|-+++.|.. .+--++.......-|++++.+|+.|-+.+--++...+
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666667777888999999987654 4445666777788899999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI 347 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I 347 (433)
.|-.|+... ...||.+-..+..|+.---+...++
T Consensus 1326 ~l~~e~~~l-------~e~leee~e~~~~l~r~lsk~~~e~ 1359 (1930)
T KOG0161|consen 1326 QLEHELDLL-------REQLEEEQEAKNELERKLSKANAEL 1359 (1930)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888875543 3345555555544444333333333
No 22
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=19 Score=42.49 Aligned_cols=221 Identities=14% Similarity=0.198 Sum_probs=119.9
Q ss_pred cccccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhch---HHHHHHHHHh
Q 013958 189 TVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ---SEISYLMKCF 265 (433)
Q Consensus 189 s~~~k~rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~---~eie~l~Kql 265 (433)
..++.|-|..-+.+-..+ +|--|.-+.... .-+.+.+.||++.-.+|+.|+.-.+-.+ .+++-.+..+
T Consensus 654 V~dP~GtlTGGs~~~~a~--~L~~l~~l~~~~-------~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l 724 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGAD--LLRQLQKLKQAQ-------KELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHEL 724 (1174)
T ss_pred eeCCCCcccCCCCCCccc--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666664433333332 444444333111 3355666666666666666655444322 2333333333
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH-------HhHHHHHHhhhHHHHhHH------------------HHHHHHHHHHHHH
Q 013958 266 AEEKAAWKNKEREVVEAAIESIAG-------ELEVERKLRRRFESLNKK------------------LGKELAETKHSLL 320 (433)
Q Consensus 266 aEEk~~wK~KE~eki~aai~slk~-------ELe~ERk~Rrr~E~ln~K------------------L~~ELaE~K~s~~ 320 (433)
+=-+---..-+.-++-+.++.+.+ ++....+.=+..+.--.. |.+||..+|.-+.
T Consensus 725 ~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 725 ALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 332222223334444444444433 344444444443333222 4556666666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhh
Q 013958 321 KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEK 400 (433)
Q Consensus 321 ~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK 400 (433)
..-+++|+-....+.|.--|++|-++|..++...+.+......+-.|+..=+-=+-=++.=. .-+|-.|.+-+.-+-+=
T Consensus 805 ~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~-~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 805 ESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV-KKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhh
Confidence 66677777777788888899999999999988888887776655444432211111111111 23455566666666666
Q ss_pred hHHHHHHHHHHHHHHhhhc
Q 013958 401 NAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 401 ~s~ldkL~~elE~FL~sk~ 419 (433)
+..++.+..+.|.|+..+.
T Consensus 884 dt~i~~~~~~~e~~~~e~~ 902 (1174)
T KOG0933|consen 884 DTEISGLLTSQEKCLSEKS 902 (1174)
T ss_pred hHHHhhhhhHHHHHHHHhh
Confidence 6777888888888888765
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.98 E-value=17 Score=40.11 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 013958 228 SLVSALHAELERARLQVNQLIQEQ 251 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~ 251 (433)
.-|..|+.+|.+++....+|..+.
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 24
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.81 E-value=2.4 Score=47.12 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=78.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 013958 223 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 302 (433)
Q Consensus 223 ~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 302 (433)
-++-.+.|+.+-.||+.|+.+|..|++|. ++|.-|++...-.-+...-+-|. .+..-|.. .+
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~-------e~L~~ql~~~N~~~~~~~~~~i~----~~~~~L~~-------kd 291 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREV-------EQLREQLAKANSSKKLAKIDDID----ALGSVLNQ-------KD 291 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhccCCchH----HHHHHHhH-------HH
Confidence 34556789999999999999999998875 56666666554333322112222 23333333 78
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhcccHHHHHHHHHH--hHHHHHHHHHhHHHHH
Q 013958 303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA---RDINDDKSEVEELKRE--SAIALEEVEKEREMIQ 376 (433)
Q Consensus 303 ~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELA---k~I~e~kaEve~lKre--s~k~~eE~eeER~MLq 376 (433)
++|.+|..++-..+.|+.. .+|..|.++. ++...+..++++|+.+ +...++|+..|-.+|+
T Consensus 292 ~~i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 292 SEIAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 8899998888877777654 4444554443 3344555666666665 3356667777777775
No 25
>PRK11637 AmiB activator; Provisional
Probab=92.40 E-value=12 Score=38.92 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 340 CDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres~k~ 364 (433)
-+.|...+.++.+++..|+++..++
T Consensus 221 l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544443
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=92.04 E-value=24 Score=39.53 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=7.2
Q ss_pred chHHHHHHHHhhcCC
Q 013958 205 TSKELLKIINRMWGQ 219 (433)
Q Consensus 205 TS~ELlkvlnriw~l 219 (433)
+.++-..++..|-++
T Consensus 147 ~p~~R~~ii~~l~~l 161 (880)
T PRK02224 147 TPSDRQDMIDDLLQL 161 (880)
T ss_pred CHHHHHHHHHHHhCC
Confidence 344555555555443
No 27
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=91.23 E-value=6.5 Score=34.82 Aligned_cols=54 Identities=20% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 013958 207 KELLKIINRMWGQEDRP------SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISY 260 (433)
Q Consensus 207 ~ELlkvlnriw~leeq~------~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~ 260 (433)
+-|+|.+..+-.+.+.. ...-.+.-.+..+|+.+...+..+..=..++..++++
T Consensus 19 ~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 19 KRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555432 2344566777778888887777776666665555444
No 28
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.01 E-value=14 Score=42.63 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=63.2
Q ss_pred cccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhH
Q 013958 197 KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKE 276 (433)
Q Consensus 197 k~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE 276 (433)
.-..--++.|.+..+||+++. |...--+|-+..+--+||.+=..|+--.--+.....+.+.+++...+=-..--+|+
T Consensus 840 ~K~~~l~kns~k~~ei~s~lk---e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~ 916 (1259)
T KOG0163|consen 840 RKINALLKNSLKTIEILSRLK---EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKE 916 (1259)
T ss_pred HHHHHHHHhhHHHHHHHHHHh---cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334455778889999999985 34445566778888888888888874333344445566666665544333333455
Q ss_pred HHHHHH--HHHHHHHHhHHHHHHh
Q 013958 277 REVVEA--AIESIAGELEVERKLR 298 (433)
Q Consensus 277 ~eki~a--ai~slk~ELe~ERk~R 298 (433)
+.-|.. .++.+.+.+|.||+-|
T Consensus 917 ~q~~~e~er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 917 QQQIEELERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 544443 3566777888888754
No 29
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=90.23 E-value=3.9 Score=39.54 Aligned_cols=150 Identities=20% Similarity=0.330 Sum_probs=77.7
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh-hhHHHHHHHHH
Q 013958 206 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVEAAI 284 (433)
Q Consensus 206 S~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK-~KE~eki~aai 284 (433)
-+|||+.|+=+= +|-++-++ +|.+|++|- ++.++.|.+=-...+.+-+.-|--|-.+-. ..+.+ ++.
T Consensus 12 k~dLL~LLsilE--GELqARD~-vI~~Lkaer------~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v~ 79 (192)
T PF09727_consen 12 KDDLLKLLSILE--GELQARDV-VIAMLKAER------KKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DVY 79 (192)
T ss_pred HHHHHHHHHHHH--HHHHHHHH-HHHHHHHhh------hhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cch
Confidence 478998888764 55566554 678887762 233333332111112222222222211111 01111 112
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcccHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV-----------IEQVCDELARDINDDKSE 353 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRel-----------lE~vCdELAk~I~e~kaE 353 (433)
..=-.+|+ ++--+--..+.|+..-|+.+...-.+.+.|||.|++...- ||.-.+.|-+.|.-.++.
T Consensus 80 ~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~ 156 (192)
T PF09727_consen 80 ENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ 156 (192)
T ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222232 2333444567889999999999999999999999998764 444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHH
Q 013958 354 VEELKRESAIALEEVEK 370 (433)
Q Consensus 354 ve~lKres~k~~eE~ee 370 (433)
+..+-++..+....+++
T Consensus 157 ~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 157 QKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444443333333
No 30
>PRK09039 hypothetical protein; Validated
Probab=90.11 E-value=25 Score=36.21 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 309 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 309 (433)
|+.+..||+...++|.+|-.--..++. ....+...|..++.+|+.=+..|-++|.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~-------------------~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQ-------------------GNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999999999884432222221 2344455555566666655555556666554443
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 013958 310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK 389 (433)
Q Consensus 310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMK 389 (433)
....+.+..+...-.+|..++ .+-.|--..|.-.+++|++||.....+..+++.=.... .+-++|+.
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k-------~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~------~~~~~~i~ 175 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEK-------QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD------RESQAKIA 175 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 333333333333322222222 22333344455556666666666555544433211111 22222222
Q ss_pred hhHhh--hhhhhhhHHHHHHHHHHHHHH
Q 013958 390 LSEAK--YQLEEKNAAVDKLRSQLEAFS 415 (433)
Q Consensus 390 L~eAk--~~leeK~s~ldkL~~elE~FL 415 (433)
-...+ .++.+|...|.+++.++..=|
T Consensus 176 ~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 176 DLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22222 234456667777777774333
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.93 E-value=32 Score=37.23 Aligned_cols=135 Identities=26% Similarity=0.372 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHH---HHHHHhhhc
Q 013958 276 EREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD----TEKRARVVIEQV---CDELARDIN 348 (433)
Q Consensus 276 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE----~ERkaRellE~v---CdELAk~I~ 348 (433)
|-..++..+.+|+.||+.++..-.++..--....-.....+.-+.++..+|+ .+.+++..+.++ -+++..+..
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae 382 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAE 382 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 3445666677777777666543322211111111111122222222222332 233344333222 234444455
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 013958 349 DDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 418 (433)
Q Consensus 349 e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk 418 (433)
+-+.+.+.++.+..+++.|++.=+-.+.-++ +||..|.-.++.-.+.-.....+|.+.-.+.
T Consensus 383 ~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 383 EAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5566666666666677777777777776665 5666666666655566666777777754443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=89.75 E-value=38 Score=37.81 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=14.0
Q ss_pred hhchHHHHHHHHhhcCCCC
Q 013958 203 LTTSKELLKIINRMWGQED 221 (433)
Q Consensus 203 L~TS~ELlkvlnriw~lee 221 (433)
+++.++..++|.+|-+++.
T Consensus 141 ~~~~~~r~~~~~~~~~~~~ 159 (880)
T PRK03918 141 LESDESREKVVRQILGLDD 159 (880)
T ss_pred hcCcHHHHHHHHHHhCCHH
Confidence 4567888888888876644
No 33
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.55 E-value=49 Score=38.78 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHH
Q 013958 240 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKL 308 (433)
Q Consensus 240 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rr-----------r~E~ln~KL 308 (433)
....|.|+--..+..-++|+.-|+++.--.. -=.+|.--....|..++.||+.+++.|- =++..|.||
T Consensus 250 ~~s~i~E~d~~lq~sak~ieE~m~qlk~kns-~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkl 328 (1265)
T KOG0976|consen 250 TCSMIEEQDMDLQASAKEIEEKMRQLKAKNS-VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKL 328 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554432111 1123444445668889999999998664 467889999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHh
Q 013958 309 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRES 361 (433)
Q Consensus 309 ~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL---Ak~I~e~kaEve~lKres 361 (433)
.++.+++..++..+...+|-=-.-+.=||+--|++ |+-|.+.+.-|+++++..
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL 384 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL 384 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999988877666544443333333333333332 344555555555555443
No 34
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.14 E-value=23 Score=34.37 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=45.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhh-HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013958 269 KAAWKNKEREVVEAAIESIAGELEVERKLRRR-FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELA 344 (433)
Q Consensus 269 k~~wK~KE~eki~aai~slk~ELe~ERk~Rrr-~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELA 344 (433)
+..-=+.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...++..++|.+.
T Consensus 86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 86 KQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33333344455566677788888888887766 788888899988887766554221 122223345555555443
No 35
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.35 E-value=21 Score=33.09 Aligned_cols=66 Identities=20% Similarity=0.431 Sum_probs=46.1
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958 296 KLRRRFESLNKKLGKELAETKHSLLK-------AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 363 (433)
Q Consensus 296 k~Rrr~E~ln~KL~~ELaE~K~s~~~-------alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k 363 (433)
++++.++.++.+|..|+..++..++- -+++.......+ +.++-.++..+|.+.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888777775543 223333332222 7888888999999999999988876554
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.99 E-value=66 Score=38.29 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 281 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~ 281 (433)
.-.-+..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-...+.
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 688 (1201)
T PF12128_consen 633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLN 688 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999998888888888888877777777777776665555444
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.72 E-value=48 Score=39.92 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
.--||...+.....+++.+|.-+.+=.-+..--+|-.-+|.+.+.++..+|.|...+..++.
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 34466667777777888888888877777777888888899999999998888776655543
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.50 E-value=66 Score=37.79 Aligned_cols=80 Identities=26% Similarity=0.362 Sum_probs=61.6
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHhhhcccHHHHHHHHHHhH---H
Q 013958 298 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-----------RVVIEQVCDELARDINDDKSEVEELKRESA---I 363 (433)
Q Consensus 298 Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka-----------RellE~vCdELAk~I~e~kaEve~lKres~---k 363 (433)
.+.++.-|..|++||++-..-++-.-.+|+.++++ +..++.---++.++|.+...++-+-|++.+ .
T Consensus 272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd 351 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD 351 (1265)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 45688899999999998776666666677777764 456777788888998888888888777754 4
Q ss_pred HHHHHHHhHHHHHH
Q 013958 364 ALEEVEKEREMIQV 377 (433)
Q Consensus 364 ~~eE~eeER~MLqm 377 (433)
.+.|+|++|-|+-|
T Consensus 352 k~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 352 KLNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHHH
Confidence 55689999988855
No 39
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.38 E-value=6.6 Score=39.89 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958 324 KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 324 kelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~e 366 (433)
+|-+...+.=+-+|+-++++.++|.+.+.|...+..+-.+.|.
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~ 99 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWR 99 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444557777888888888888888887766554444
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.85 E-value=21 Score=42.18 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=31.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 359 (433)
Q Consensus 299 rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKr 359 (433)
..+|.++..|..|+-++ ..++..+.....-++.--+.|.+-|..+..++..|+.
T Consensus 411 ek~e~~~~~L~~e~~~~-------~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 411 EKLEEQINSLREELNEV-------KEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444443 3344445555666666666777777777777776665
No 41
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.77 E-value=25 Score=37.58 Aligned_cols=166 Identities=25% Similarity=0.372 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchH---HHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHHHHHhHHHHH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQS---EISYLMKCFAEEKAA------WKNKEREVVEAAIESIAGELEVERK 296 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~---eie~l~KqlaEEk~~------wK~KE~eki~aai~slk~ELe~ERk 296 (433)
..|++.|+.. +-|--|+.|+.+++..-. +=|+|.-+|.-|+-. +..-|..|..-+-+-|--.|+.||+
T Consensus 105 ~~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 105 AASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555432 345567777777765322 223333333333211 1111222333333445566777765
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HhhhcccHHHHHHHHHHhH
Q 013958 297 LRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL--------------ARDINDDKSEVEELKRESA 362 (433)
Q Consensus 297 ~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL--------------Ak~I~e~kaEve~lKres~ 362 (433)
|-|.+..-|.-| -|.++.+ --|.-.|+-+||=++-.+= -+|+ ..++.||
T Consensus 182 ---RHeqis~mLilE---cKka~~K---aaEegqKA~ei~Lklekdksr~~k~eee~aaERergl-qteaqve------- 244 (561)
T KOG1103|consen 182 ---RHEQISLMLILE---CKKALLK---AAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL-QTEAQVE------- 244 (561)
T ss_pred ---HHHHHHHHHHHH---HHHHHHH---HHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-chHHHHH-------
Confidence 344555555544 3333333 3445556666654443322 1221 1233343
Q ss_pred HHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958 363 IALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 363 k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~ 419 (433)
+..+|++.||..|+ |+.=|+|.-|-- |-+-+.-|.+...++|+-+..-+
T Consensus 245 k~i~EfdiEre~LR-Ael~ree~r~K~-------lKeEmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 245 KLIEEFDIEREFLR-AELEREEKRQKM-------LKEEMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhhcC
Confidence 56678888998886 778888877733 33345556666677777665433
No 42
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.85 E-value=59 Score=36.80 Aligned_cols=137 Identities=23% Similarity=0.262 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Q 013958 275 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV 354 (433)
Q Consensus 275 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEv 354 (433)
|+.++...-+-.+..+|+..+...-+.+..=.. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344555555555666665555444333222111 2223333333333455555666677888888888899999999
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhh-hhhhhHhhhhhhhhh---HHHHHHHHHHHHHHhh
Q 013958 355 EELKRESAIALEEVEKEREMIQVADVLREERA-QIKLSEAKYQLEEKN---AAVDKLRSQLEAFSRN 417 (433)
Q Consensus 355 e~lKres~k~~eE~eeER~MLqmAEvWREERV-QMKL~eAk~~leeK~---s~ldkL~~elE~FL~s 417 (433)
..|+.+...+.+++.+-..+ +.+.|..-+. |-.|.++...|-+|+ .+--+|.++|..+...
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTRE--VQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99998887776554443333 5577888777 456778888888898 7778888888776543
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.79 E-value=31 Score=31.46 Aligned_cols=93 Identities=28% Similarity=0.369 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 013958 230 VSALHAELERARLQ-------VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 302 (433)
Q Consensus 230 v~aL~~EL~~Ar~~-------I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 302 (433)
+.+|++|.+-|..+ |++|..+.-...++|..|-+++.-= -.+-|++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 35677777666555 5555555555566677775544321 12478999999999999999999999999
Q ss_pred HHhHHHH---HHHHHHHHHHHHHHhHHH
Q 013958 303 SLNKKLG---KELAETKHSLLKAVKDLD 327 (433)
Q Consensus 303 ~ln~KL~---~ELaE~K~s~~~alkelE 327 (433)
.+|+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 566666555555554444
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.23 E-value=35 Score=31.65 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh-HHHHHHhhhHHHHh
Q 013958 228 SLVSALHAELERAR-LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EVERKLRRRFESLN 305 (433)
Q Consensus 228 Slv~aL~~EL~~Ar-~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL-e~ERk~Rrr~E~ln 305 (433)
+-++.|+.|+...+ .++..|..+...-+.+++.|-.+|.+|-.- -+.-++--+..-|.++ +.......+...+|
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~----l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINK----LRAEVKLDLNLEKGRIREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666777776544 556667777777777777777777666211 1111111122222222 12234556788899
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013958 306 KKLGKELAETKHSLLKAVK 324 (433)
Q Consensus 306 ~KL~~ELaE~K~s~~~alk 324 (433)
.|+..|++.+++.+..+.-
T Consensus 134 ~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988887665433
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.14 E-value=1.1e+02 Score=36.64 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 267 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 267 (433)
..|..++...+..|.++..+......+++.+...+.+
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 46
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.75 E-value=60 Score=33.16 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhH
Q 013958 323 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNA 402 (433)
Q Consensus 323 lkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s 402 (433)
..|+-+---++.-||.+|.||-+.....+.|...+-++-...|.|+ .+..|.-|.|....+++.+.
T Consensus 63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el--------------~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKEL--------------SEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccc
Confidence 3344455567889999999999998777766655544433333332 24556666666666555543
Q ss_pred H
Q 013958 403 A 403 (433)
Q Consensus 403 ~ 403 (433)
.
T Consensus 129 ~ 129 (309)
T PF09728_consen 129 R 129 (309)
T ss_pred h
Confidence 3
No 47
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=82.70 E-value=75 Score=34.28 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCC-CCCCC---cchhHHHHHHHHHHHHHHHHHHHHHH
Q 013958 207 KELLKIINRMWGQ-EDRPS---SSMSLVSALHAELERARLQVNQLIQE 250 (433)
Q Consensus 207 ~ELlkvlnriw~l-eeq~~---s~~Slv~aL~~EL~~Ar~~I~eL~~E 250 (433)
.+|..++|.+... .+... ..-++|...+.+++....+|.+|..+
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988632 22222 34456666666666666655555443
No 48
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.01 E-value=48 Score=31.57 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSD----------------QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~----------------~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~E 290 (433)
..||..|++.+.+-+.++.+|++--.+. -.+|+.++.+|.||+. ++ +.+...-.-+++.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~---~~L~qvN~lLReQ 89 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RS---EELAQVNALLREQ 89 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hH---HHHHHHHHHHHHH
Confidence 3689999999999999999998866322 2568899999999974 33 3334444556777
Q ss_pred hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013958 291 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK 330 (433)
Q Consensus 291 Le~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ER 330 (433)
||..+ ..|..|..||.-+...+..+..+|+...
T Consensus 90 LEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 90 LEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655 4688888888888888887777776543
No 49
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.82 E-value=0.34 Score=54.98 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH-HHHHhhh--hHHHHHHHHH
Q 013958 208 ELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE-EKAAWKN--KEREVVEAAI 284 (433)
Q Consensus 208 ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE-Ek~~wK~--KE~eki~aai 284 (433)
+|=-..+..-.++|..--.+.-+..|..||-.-|.++.+|+..+......|..|--+|.+ |-.+.++ +.--+..+-|
T Consensus 673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri 752 (859)
T PF01576_consen 673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI 752 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence 444455555566777777788899999999999999999999999999999999888876 3334444 5666788889
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 357 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~l 357 (433)
..|-.+|+.|.+-+..+...++|+-+=|.|+- -.+|.+|+.-.-+-++||.|-.-|..||..+++.
T Consensus 753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~-------~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 753 RELEEELESEQRRRAEAQKQLRKLERRVKELQ-------FQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999999999988776643 3578899999999999999999999998888754
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.05 E-value=1.1e+02 Score=35.26 Aligned_cols=111 Identities=28% Similarity=0.383 Sum_probs=64.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH----
Q 013958 299 RRFESLNKKLGKELAETKHSLL-------KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE---- 367 (433)
Q Consensus 299 rr~E~ln~KL~~ELaE~K~s~~-------~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE---- 367 (433)
..+|..+++|-.|+.-.++-+. .-.+++|-.+-....|-.=||.+..+++.-++|+.+|..+..-.-..
T Consensus 241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3456666666666666655222 22356777777777777779999999999988888777664422111
Q ss_pred -------------HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 368 -------------VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 368 -------------~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
.+.+..||| +|| |+++-+|.++...++.|...+..+..|+..
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lq-sdv---e~Lr~rle~k~~~l~kk~~~~~~~qeE~~~ 375 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQ-SDV---EALRFRLEEKNSQLEKKQAQIEKLQEEKSR 375 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333443 232 445555555555555555555555554443
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.74 E-value=80 Score=33.31 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH---HHHHhHHHHH
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE---EVEKEREMIQ 376 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~e---E~eeER~MLq 376 (433)
+..++.+.+..+.....+++.-.+.+..++.--.+|-..+.+...++..+..+...+.. +++.|+.+..
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~ 406 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRG 406 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455545555445555444444455555555555555555555555554444433 3455555543
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.36 E-value=1.2e+02 Score=35.09 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHh
Q 013958 340 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADV 380 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEv 380 (433)
|-+|...|...+.+|...+.++.+.+.|||.=+.||+-+|.
T Consensus 543 ~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~ 583 (775)
T PF10174_consen 543 NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN 583 (775)
T ss_pred CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778888889999999999999888877777877764
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.19 E-value=1.4e+02 Score=35.79 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.3
Q ss_pred hHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958 382 REERAQIKLSEAKYQLEEKNAAVDKLRSQLE 412 (433)
Q Consensus 382 REERVQMKL~eAk~~leeK~s~ldkL~~elE 412 (433)
++.-.||-+.+++..+++|+..+..|...|.
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4566899999999999999988887776664
No 54
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.12 E-value=57 Score=31.18 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=30.9
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHH
Q 013958 340 CDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQ 410 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~e 410 (433)
|+.|-..|...+.+++..+.+....++.++.-+..|. +-.=..+..+..+.+....+.+....+..+...
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555555 222222334444444444444444444443333
No 55
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.54 E-value=35 Score=37.13 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=57.6
Q ss_pred HHHHHHHHHhHHHH-HHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHh-------------h
Q 013958 282 AAIESIAGELEVER-KLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDELAR-------------D 346 (433)
Q Consensus 282 aai~slk~ELe~ER-k~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka-RellE~vCdELAk-------------~ 346 (433)
+-+.++.++|+.|+ |+=.++|.+--+|..|-.. +.-...+|.-.++|+++ -+|||++-.+|-. +
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 44555666666666 4556666665555554332 22333444446666554 3566666555421 1
Q ss_pred -----hcccHHHHHHHHHHhHHHHHHHHHhHHH------HHHhHhh
Q 013958 347 -----INDDKSEVEELKRESAIALEEVEKEREM------IQVADVL 381 (433)
Q Consensus 347 -----I~e~kaEve~lKres~k~~eE~eeER~M------LqmAEvW 381 (433)
.-+.+.||..||+++-++. |..+|+.| +|++--|
T Consensus 400 rsSaRe~eleqevkrLrq~nr~l~-eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 400 RSSAREIELEQEVKRLRQPNRILS-EQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred chhHHHHHHHHHHHHhccccchhh-hhhhhhhhhhhhHHHHHHHHH
Confidence 2357789999999988775 66677765 4556666
No 56
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.91 E-value=85 Score=35.56 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=25.9
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 013958 192 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHA 235 (433)
Q Consensus 192 ~k~rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~ 235 (433)
|+..+--+.-.|++...---..+.=|+..+.|.-+ +|..|+++
T Consensus 311 f~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RD-ALAAA~kA 353 (652)
T COG2433 311 FNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERD-ALAAAYKA 353 (652)
T ss_pred cCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHH-HHHHHHHH
Confidence 44444555556666644443456668888888755 45666655
No 57
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.53 E-value=1.3e+02 Score=34.51 Aligned_cols=207 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH---------
Q 013958 196 LKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA--------- 266 (433)
Q Consensus 196 lk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla--------- 266 (433)
++..-+++..+..++.-+++.|..+.++++ -|--+..-|-+-...++.+.+.+.....++.++++.+.
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~~---~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl 424 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQVA---GITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRL 424 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH----------HHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013958 267 EEKAAWKNKEREVVEAAIESIA----------GELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVI 336 (433)
Q Consensus 267 EEk~~wK~KE~eki~aai~slk----------~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRell 336 (433)
....---.++.|.+++.|+.+. +++..+=..+++. +.+|..++.+..+.+...-+++...|+.++++
T Consensus 425 ~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~---~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~ 501 (716)
T KOG4593|consen 425 AEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKR---LEKLEHELKDLQSQLSSREQSLLFQREESELL 501 (716)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 013958 337 EQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSR 416 (433)
Q Consensus 337 E~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~ 416 (433)
-+--+.+.+++...+.|-..|+-..+.-.-+-+.+-..-.+ |||..-=+=-+-..|-..+..|++|+++...
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rV--------l~~~~npt~~~~~~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRV--------LHMSTNPTSKARQIKKNRLEELQAELERLKE 573 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccce--------eeecCCchHHHHHHHHHHHHHHHHHHHHHHH
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.23 E-value=65 Score=30.78 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 013958 278 EVVEAAIESIAGELEVERK 296 (433)
Q Consensus 278 eki~aai~slk~ELe~ERk 296 (433)
+.++..|+.++.+++..|+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 59
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=78.06 E-value=34 Score=37.54 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=19.6
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013958 218 GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ 255 (433)
Q Consensus 218 ~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~ 255 (433)
|-.|-.+..+|-. =..-+..|+||+.|.+.++
T Consensus 73 G~~d~~pDPLsPg------E~~l~~Kl~eLE~e~k~d~ 104 (508)
T PF00901_consen 73 GTGDEPPDPLSPG------EQGLQRKLKELEDEQKEDE 104 (508)
T ss_pred cCCCCCCCCCCHh------HHHHHHHHHHHHHHHhhHH
Confidence 4555544444432 2467888888888887543
No 60
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=77.26 E-value=1.8e+02 Score=35.48 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=22.5
Q ss_pred cccccc--cCCCCCCchhhHhhhhhccceeeccccCC-CCCCCCCCccccc
Q 013958 15 KIRKRG--CSSSASSTSSIVQNYRFKRAILIGKRGGG-GGSATPVPTWRLM 62 (433)
Q Consensus 15 kirkr~--~sss~s~ss~~~~~~r~kr~ilvgkrg~~-gG~~TP~ptWrl~ 62 (433)
|+.+-| .||.|=||.+.+-- .||= --|+| |-..+-+--|.|+
T Consensus 224 km~~dG~V~s~~aVGTPDYISP-----EvLq-s~~~~~g~yG~ecDwWSlG 268 (1317)
T KOG0612|consen 224 KMDADGTVRSSVAVGTPDYISP-----EVLQ-SQGDGKGEYGRECDWWSLG 268 (1317)
T ss_pred hcCCCCcEEeccccCCCCccCH-----HHHH-hhcCCccccCCccchhhhH
Confidence 677777 67777787654432 1210 11223 3445566667764
No 61
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=76.59 E-value=86 Score=31.35 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=15.4
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 389 KLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 389 KL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
++.+++..+.+-...++.+..+++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666666654
No 62
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=76.46 E-value=2.2e+02 Score=36.07 Aligned_cols=113 Identities=26% Similarity=0.383 Sum_probs=56.2
Q ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958 262 MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD 341 (433)
Q Consensus 262 ~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCd 341 (433)
++.+.+|---||.+-++-+...=+.=..++ +++.+.+.+|-.||.+.+..+.-+-+++.+=+ +-+-.--|
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~-------~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld 1349 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDY-------EKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLD 1349 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 455666666677666655444211111111 12223555555555544444444444444333 23333445
Q ss_pred HHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhh-hhhhHhhhhh
Q 013958 342 ELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQ-IKLSEAKYQL 397 (433)
Q Consensus 342 ELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQ-MKL~eAk~~l 397 (433)
+|-..+.+...+|..++.- --.+|..|.+.+-| |.|.+++.+.
T Consensus 1350 ~l~~e~~~lt~~~~ql~~~-------------~~rL~~~~~e~~~q~~el~~~~~~~ 1393 (1822)
T KOG4674|consen 1350 ELNNEKANLTKELEQLEDL-------------KTRLAAALSEKNAQELELSDKKKAH 1393 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544322 12367788888888 6776666443
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.16 E-value=63 Score=29.59 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013958 232 ALHAELERARLQVNQLIQEQ 251 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~ 251 (433)
.+..|+.-++.++.+|.+|-
T Consensus 78 ~~~~e~~~~~~~l~~l~~el 97 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEEL 97 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHH
Confidence 34445555555555555443
No 64
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.65 E-value=1.5e+02 Score=33.98 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 013958 294 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 294 ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ 328 (433)
||+.++.++.++.+| -..+.++.++.+-++.
T Consensus 634 Er~~~~EL~~~~~~l----~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 634 EREFKKELERMKDQL----QDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 777777777766664 2234455444444433
No 65
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.30 E-value=9.1 Score=33.41 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=54.1
Q ss_pred HHhHHHHHHhhhHHHHhHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 013958 289 GELEVERKLRRRFESLNKKLGKELAETKHSL-LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 356 (433)
Q Consensus 289 ~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~-~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~ 356 (433)
.+|..|+..|..+|....++-.||-+.-.++ ..|=+=...+|+.+..+|.=-+.|-+.+.+-+..++.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999977765 6666667888988888888888887777665544443
No 66
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.78 E-value=85 Score=30.39 Aligned_cols=135 Identities=18% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
-|..|...|..|.....+...--.-....+..+-..| +++| -+.+..-|..|..+|..=...-+.+|.--.
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR-------~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER-------AEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555555555555544443333333333332222 2232 333444444555555444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~ee 370 (433)
+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+..|++.
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333333333333333333456677888888888888888888888888888777653
No 67
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.74 E-value=82 Score=30.21 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958 305 NKKLGKELAETKH---SLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 363 (433)
Q Consensus 305 n~KL~~ELaE~K~---s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k 363 (433)
|++|..-|..+.. .+.+.+++|++.+.+=.-+..--..+-+.|.+.+-|-+.|.+...+
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443332 2334444455555544444444455555666666666666655444
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.56 E-value=2e+02 Score=34.49 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHH---HHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLM---KCFAEEKAAWKNKEREVVEAAIESIAGELEVE 294 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~---KqlaEEk~~wK~KE~eki~aai~slk~ELe~E 294 (433)
...+++.++..+.+...+....+.++..+. .++..+...++....+++...+..+..+|..-
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 697 (1201)
T PF12128_consen 633 INKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL 697 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444442 22333334444555555556666655555443
No 69
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=61 Score=36.77 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 309 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 309 (433)
+.+|+.||++--.+|..|+++. |+|.|+|++=-++-+.-----...-+-.++.-++.|.-.-+.+-..-
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~---- 402 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTIS---- 402 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHH----
Confidence 5678888888888888777664 89999999866554432222222344566777777766555433222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958 310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve 355 (433)
++.+-+-++.- -+|.=+.-+..|.+|.-.-+..+-|+.
T Consensus 403 -~~~~~~~~~s~-------~~r~L~~~~~~~~~~~~~~~s~~~Ei~ 440 (852)
T KOG4787|consen 403 -ELERKNLELTT-------QVKQLETKVTPKPNFVVPSGTTTTELR 440 (852)
T ss_pred -HHHHhcccHHH-------HHHHHhhccccchhhcCCCcchHHHHH
Confidence 22233333333 344455678899999877666655544
No 70
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=74.10 E-value=39 Score=30.39 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhH-------HHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHH
Q 013958 333 RVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKER-------EMIQVADVLREERAQIKLSEAKYQLEEKNAAVD 405 (433)
Q Consensus 333 RellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER-------~MLqmAEvWREERVQMKL~eAk~~leeK~s~ld 405 (433)
-.-|.+.|++|...|.+...=|..+-.-....-.++|.|+ .+|.....=|+ -+.......+.||...|+
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~----~~~q~lq~~I~Ek~~eLE 97 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQRE----AQQQQLQALIAEKKMELE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 3456778999999999888888877776665555666554 33333322222 233445677899999999
Q ss_pred HHHHHHHHHHh
Q 013958 406 KLRSQLEAFSR 416 (433)
Q Consensus 406 kL~~elE~FL~ 416 (433)
+|+.|.++...
T Consensus 98 Rl~~E~~sL~k 108 (120)
T PF14931_consen 98 RLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 71
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.93 E-value=2.4 Score=36.35 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013958 255 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 334 (433)
Q Consensus 255 ~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRe 334 (433)
..+||.|+..|+++-..-. ++.......|..+..+|.. .+..+..|-..|..++......+.+-+ ..+..
T Consensus 20 ~~eVD~fl~~l~~~~~~l~-~e~~~L~~~~~~l~~~l~~-------~~~~~~~l~~~l~~aq~~a~~~~~~A~--~eA~~ 89 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQ-RENAELKEEIEELQAQLEE-------LREEEESLQRALIQAQETADEIKAEAE--EEAEE 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHhhhhhhhhHHHHHHHHH--HHHHH
Confidence 4578888888887743222 2222233333333333322 122223333333333333333333322 22555
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 013958 335 VIEQVCDELARDINDDKSEVEELKRESAIALEE 367 (433)
Q Consensus 335 llE~vCdELAk~I~e~kaEve~lKres~k~~eE 367 (433)
++++.=.+-..-|.+.+++++.|..+...+..+
T Consensus 90 i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 90 IIEEAQKEAEEIIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444555555555555554444333
No 72
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=73.75 E-value=1.1 Score=51.13 Aligned_cols=93 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhh--hHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN--KEREVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~--KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
|.-|..+|+.+++.+.+|.+-++...+.+..+..++.+....+-. ++.....+-|..++.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344666777777777777777766666666665555444332222 233445566788888888888888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013958 308 LGKELAETKHSLLKA 322 (433)
Q Consensus 308 L~~ELaE~K~s~~~a 322 (433)
|..||.++...+..+
T Consensus 438 L~~El~dl~~q~~~~ 452 (859)
T PF01576_consen 438 LQDELEDLTSQLDDA 452 (859)
T ss_dssp ---------------
T ss_pred HHHhhccchhhhhhh
Confidence 999999887665544
No 73
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=73.38 E-value=1e+02 Score=31.81 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=15.5
Q ss_pred HhhhchHHHHHHHHHhHHHHH
Q 013958 250 EQRSDQSEISYLMKCFAEEKA 270 (433)
Q Consensus 250 E~~s~~~eie~l~KqlaEEk~ 270 (433)
.+.....++.+++++|.+.|.
T Consensus 17 rr~~~~~e~~~l~~~f~elke 37 (291)
T KOG4466|consen 17 RRANEESEMSNLEKQFSELKE 37 (291)
T ss_pred hhhhhhhhhhhhhhhhhHHHH
Confidence 344456678999999998873
No 74
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.23 E-value=35 Score=27.93 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 293 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ 293 (433)
+.|.+|+.-|+++-.+|.-...+...-..|=+.++.++.+ ..-+-+++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888877777777777777766 234566777777777777653
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.38 E-value=1.6e+02 Score=32.54 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.1
Q ss_pred HHHHHHHhHHHH
Q 013958 284 IESIAGELEVER 295 (433)
Q Consensus 284 i~slk~ELe~ER 295 (433)
|..++..|+.|+
T Consensus 302 l~~~~~q~~~e~ 313 (650)
T TIGR03185 302 LDSTKAQLQKEE 313 (650)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 76
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.37 E-value=70 Score=28.38 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHh
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLR 298 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE~eki~aai~slk~ELe~ERk~R 298 (433)
+..|..|+..+...+..........+.+++...+.. +.++...-=--|-..-..|..++.++..-+...
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888877777777777777666654433 222222222223333344566666665544333
No 77
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.90 E-value=69 Score=36.64 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=51.2
Q ss_pred ccccchhch------HHHHHHHHhhcCCCCCCCcchhHHHHH---HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 013958 198 DVSNALTTS------KELLKIINRMWGQEDRPSSSMSLVSAL---HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 268 (433)
Q Consensus 198 ~~~~~L~TS------~ELlkvlnriw~leeq~~s~~Slv~aL---~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 268 (433)
..+|.+.+. .+++.--..+.+ ++...---||..| +.++++.+..+.++.+|-...+.+++...+++.++
T Consensus 486 g~S~a~~iA~~~Glp~~ii~~A~~~~~--~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 486 GKSNAFEIAKRLGLPENIIEEAKKLIG--EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred CCcHHHHHHHHhCcCHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 455555555542 2222222334443 44555555566666666666666666666666666
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhH
Q 013958 269 KAAWKNKEREVVEAAIESIAGELE 292 (433)
Q Consensus 269 k~~wK~KE~eki~aai~slk~ELe 292 (433)
+.....+.+++...+|..++.|.+
T Consensus 564 ~~~~~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 564 EDKLLEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 78
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=70.99 E-value=54 Score=37.45 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=57.4
Q ss_pred cccchhch------HHHHHHHHhhcCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 199 VSNALTTS------KELLKIINRMWGQEDRPS-SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 199 ~~~~L~TS------~ELlkvlnriw~leeq~~-s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
.+|.+... .+++.--..+.+-++... --+.=+...+.+++..+..+..+.+|-...+.+++...++|.+++..
T Consensus 482 ~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 482 ESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred CcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544 455555555542222111 22223344455666666777777777777777777777777777777
Q ss_pred hhhhHHHHHHHHHHHHHHHhHH
Q 013958 272 WKNKEREVVEAAIESIAGELEV 293 (433)
Q Consensus 272 wK~KE~eki~aai~slk~ELe~ 293 (433)
+..+.+++...+|..++.|++.
T Consensus 562 ~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 562 KKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766543
No 79
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.77 E-value=2e+02 Score=33.07 Aligned_cols=93 Identities=20% Similarity=0.343 Sum_probs=57.7
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013958 264 CFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 343 (433)
Q Consensus 264 qlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL 343 (433)
||+-=|.+-|+-.+ ...-|+-.||...|.|+.+ -+|.+ .||-+||.-.|-- .-..--+|-=|
T Consensus 605 QIaTLRTVLKANKq-TAEvALanLKsKYE~EK~~--v~etm-~kLRnELK~LKED--------------AATFsSlRamF 666 (717)
T PF09730_consen 605 QIATLRTVLKANKQ-TAEVALANLKSKYENEKAM--VSETM-MKLRNELKALKED--------------AATFSSLRAMF 666 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh--HHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 34444455555434 6678899999999999876 34444 4677776543321 22233455556
Q ss_pred HhhhcccHHHHHHHHHHhHHHHHHHHHhHH----HHHHh
Q 013958 344 ARDINDDKSEVEELKRESAIALEEVEKERE----MIQVA 378 (433)
Q Consensus 344 Ak~I~e~kaEve~lKres~k~~eE~eeER~----MLqmA 378 (433)
|..-.+|-.+|++|.|.... .|+|++ .|+||
T Consensus 667 a~RCdEYvtQldemqrqL~a----AEdEKKTLNsLLRmA 701 (717)
T PF09730_consen 667 AARCDEYVTQLDEMQRQLAA----AEDEKKTLNSLLRMA 701 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 66666777888888887664 455655 45565
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.59 E-value=1.7e+02 Score=32.03 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013958 276 EREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 332 (433)
Q Consensus 276 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka 332 (433)
.-+.|...|+.|-+-|+.|-..++.++....++...|..++........+++.=...
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356677778888888888888888888777777777777777777776666665554
No 81
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=70.43 E-value=1.7e+02 Score=31.90 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=8.6
Q ss_pred hHHHhHHhhhh
Q 013958 105 SARKLAATLWE 115 (433)
Q Consensus 105 SARKLaA~LWe 115 (433)
+|++++..|+.
T Consensus 66 ~akr~veel~~ 76 (522)
T PF05701_consen 66 SAKRTVEELKL 76 (522)
T ss_pred HHHHHHHHHHH
Confidence 57888888876
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.15 E-value=1.9e+02 Score=32.44 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=12.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHHH
Q 013958 392 EAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 392 eAk~~leeK~s~ldkL~~elE~ 413 (433)
+....+..|.....+|..++|.
T Consensus 458 ~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 458 EIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666666666654
No 83
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.05 E-value=2.8e+02 Score=34.30 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHH-----HHHHHHHHHHHHHH
Q 013958 207 KELLKIINRMWGQEDRPSSSMSLVSAL-----HAELERARLQVNQL 247 (433)
Q Consensus 207 ~ELlkvlnriw~leeq~~s~~Slv~aL-----~~EL~~Ar~~I~eL 247 (433)
.||-+++-.|-....|+.++-+-|..| .+||-..=.+|..|
T Consensus 1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L 1516 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQL 1516 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 455666666666666666555555543 33333344455544
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.49 E-value=2.8e+02 Score=34.21 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=55.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhh
Q 013958 316 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKY 395 (433)
Q Consensus 316 K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~ 395 (433)
|.++..|-+.++.-.+.-++.+++-..=+.|...-++..+.|+.+..++..+.. ++|=.|-+ ++-+..+-.-
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~--~kl~~l~d------Le~~y~~~~~ 1724 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN--EKLDRLKD------LELEYLRNEQ 1724 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HHHHHhhhhH
Confidence 333444444444444444455555555555555555666666666666553321 11111222 2334455556
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhc
Q 013958 396 QLEEKNAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 396 ~leeK~s~ldkL~~elE~FL~sk~ 419 (433)
.|+.|-++|..|..+|+..|..-.
T Consensus 1725 ~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 789999999999999999987644
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.26 E-value=1.4e+02 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013958 280 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 332 (433)
Q Consensus 280 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka 332 (433)
+.+.-..|..|+...+..-...+.... .||..++..+...-.+++.-|+.
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554444433443332 44444444444444444443333
No 86
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.18 E-value=2.1e+02 Score=32.23 Aligned_cols=149 Identities=22% Similarity=0.153 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 013958 205 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 284 (433)
Q Consensus 205 TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai 284 (433)
++.++....+-.-.|++.-..-.+.|.-+...|.--..+++.+..... +.|+-++| +..+.+.-+
T Consensus 430 i~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~--------~~k~e~ee-------e~~k~~~E~ 494 (581)
T KOG0995|consen 430 ISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE--------LKKEEAEE-------EWKKCRKEI 494 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHH
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRAR-VVIEQVCDELARDINDDKSEVEELKRESAI 363 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaR-ellE~vCdELAk~I~e~kaEve~lKres~k 363 (433)
+.+-.+|-.+.-.-......-.-+.+. +..-+..++.+.+.||... .-|..|-|..++-.....+.++.+|-...+
T Consensus 495 e~le~~l~~l~l~~~~~m~~a~~~v~s---~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~ 571 (581)
T KOG0995|consen 495 EKLEEELLNLKLVLNTSMKEAEELVKS---IELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHK 571 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 013958 364 ALEEVEKE 371 (433)
Q Consensus 364 ~~eE~eeE 371 (433)
.++|+...
T Consensus 572 ~~~ei~~~ 579 (581)
T KOG0995|consen 572 ECEEIEKA 579 (581)
T ss_pred HHHHHHhc
No 87
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.03 E-value=2.8e+02 Score=33.51 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF 265 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 265 (433)
|.--..+|....-.|+..+........+|+...-++
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433333
No 88
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.92 E-value=3.2e+02 Score=34.78 Aligned_cols=136 Identities=21% Similarity=0.360 Sum_probs=90.5
Q ss_pred HHHHHHHHhHHHHH----HhhhHH---HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958 283 AIESIAGELEVERK----LRRRFE---SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 283 ai~slk~ELe~ERk----~Rrr~E---~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve 355 (433)
.+..++.+|+.+.. .+..-| ..|..+..+|...+..|.+|..+|..-++.++..+..|+++.+-+.+-+.-++
T Consensus 1026 ~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Le 1105 (1822)
T KOG4674|consen 1026 QIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALE 1105 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHH
Confidence 35666666666633 233333 35677888899999999999999999999999999999999999887555555
Q ss_pred HHHHHhHHHHHHHHHhHHHHH---------Hh------------------HhhhHHhhhhhhhHhhh--------hhhhh
Q 013958 356 ELKRESAIALEEVEKEREMIQ---------VA------------------DVLREERAQIKLSEAKY--------QLEEK 400 (433)
Q Consensus 356 ~lKres~k~~eE~eeER~MLq---------mA------------------EvWREERVQMKL~eAk~--------~leeK 400 (433)
...-.+.+-.+.++..-..|| ++ -..|-|+. +++.++ -|--+
T Consensus 1106 qe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke---i~~tk~~~lk~e~~~L~qq 1182 (1822)
T KOG4674|consen 1106 QEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE---IAETKLDTLKRENARLKQQ 1182 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH---HHhhhHHHHHHHHHHHHHH
Confidence 444444455555554444443 12 22344433 333333 24567
Q ss_pred hHHHHHHHHHHHHHHhhhccC
Q 013958 401 NAAVDKLRSQLEAFSRNQKGK 421 (433)
Q Consensus 401 ~s~ldkL~~elE~FL~sk~~~ 421 (433)
++.+++...+|+..|...+..
T Consensus 1183 ~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1183 VASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888876543
No 89
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.40 E-value=67 Score=34.34 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHH--------HhhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA--------AWKNKEREVVEAAIESIAGELEVERKLRRR 300 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~--------~wK~KE~eki~aai~slk~ELe~ERk~Rrr 300 (433)
-|.+|+.+|+..+..+.++..+.......+. |+..+.+ .. .|....-..+.+.++.+.+++..-+...+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK-FLEDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888887777776663 3344442 11 111223455666666766666555444443
Q ss_pred HHHHhHHHHHHHHH
Q 013958 301 FESLNKKLGKELAE 314 (433)
Q Consensus 301 ~E~ln~KL~~ELaE 314 (433)
++.--++|-++|.+
T Consensus 150 ~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 150 AERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.35 E-value=2e+02 Score=31.54 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-----hhhchHHHHHHHHHhHHHHHHhhh
Q 013958 226 SMSLVSALHAELERARLQVNQLIQE-----QRSDQSEISYLMKCFAEEKAAWKN 274 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E-----~~s~~~eie~l~KqlaEEk~~wK~ 274 (433)
--+-|..|+.+|..+...|..|.=+ -.....+|+.|-..|.-|..|.+.
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ 307 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKY 307 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888887766666655433 334455688888888888777554
No 91
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=66.88 E-value=60 Score=38.53 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=10.0
Q ss_pred cchHHHhHHhhhhhc
Q 013958 103 PVSARKLAATLWEMN 117 (433)
Q Consensus 103 ~vSARKLaA~LWei~ 117 (433)
+..+..|...+|.++
T Consensus 268 S~eL~dLI~~~L~~d 282 (1021)
T PTZ00266 268 SKELNILIKNLLNLS 282 (1021)
T ss_pred CHHHHHHHHHHhcCC
Confidence 445677777777664
No 92
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=66.70 E-value=94 Score=30.30 Aligned_cols=73 Identities=26% Similarity=0.399 Sum_probs=52.5
Q ss_pred HHHHHHHhhhchHHH---HHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHH
Q 013958 244 VNQLIQEQRSDQSEI---SYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLL 320 (433)
Q Consensus 244 I~eL~~E~~s~~~ei---e~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~ 320 (433)
|.+|+.|++.....+ |+|.--+.- |+++ ++..||.|+.-.++.|.-|.|+...|.|-+.-.+
T Consensus 115 i~eLe~EKrkh~~~~aqgDD~t~lLEk--------EReR-------Lkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 115 IQELEEEKRKHAEDMAQGDDFTNLLEK--------ERER-------LKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887554322 233333332 3333 7789999999999999999999999888777777
Q ss_pred HHHhHHHHHHH
Q 013958 321 KAVKDLDTEKR 331 (433)
Q Consensus 321 ~alkelE~ERk 331 (433)
.++--|-.|++
T Consensus 180 ~~~l~Lv~E~k 190 (192)
T PF09727_consen 180 SFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHh
Confidence 77777766665
No 93
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.58 E-value=49 Score=27.07 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=10.3
Q ss_pred hhhcccHHHHHHHHHH
Q 013958 345 RDINDDKSEVEELKRE 360 (433)
Q Consensus 345 k~I~e~kaEve~lKre 360 (433)
-+|.+.++|++.|+.+
T Consensus 47 ~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 47 EENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667777777765
No 94
>PRK14154 heat shock protein GrpE; Provisional
Probab=66.05 E-value=1.3e+02 Score=29.59 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 292 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe 292 (433)
+..+-+..|..+|...+.++.+|...-.....+++.+.|....|+..-+.---+++-..+-.+-+.|+
T Consensus 49 ~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 49 LEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 45566888899999999999999887777788888888888887755544444444444444444443
No 95
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=65.29 E-value=51 Score=36.40 Aligned_cols=58 Identities=31% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
.-|+.-+|.||++-++...|+...+ ..|-+|+ ..-+++-..|-+||++|.-++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELk-------md~lrer------------elreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELK-------MDFLRER------------ELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888777776664222 2222232 23344666677888888776655555
No 96
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.12 E-value=2.2e+02 Score=31.25 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=50.5
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHH--H
Q 013958 217 WGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV--E 294 (433)
Q Consensus 217 w~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~--E 294 (433)
|-|-|.-++++|.|-|++.--.. .--+||.+-+ +-...++-|.+|.-+| |++|+.||+. |
T Consensus 374 rLLAEETAATiSAIEAMKnAhrE--EmeRELeKsq-SvnsdveaLRrQylee---------------lqsvqRELeVLSE 435 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHRE--EMERELEKSQ-SVNSDVEALRRQYLEE---------------LQSVQRELEVLSE 435 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHH--HHHHHHHhhh-ccccChHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 66777888999999998752110 0112333332 5566788888888777 3455666654 3
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHh
Q 013958 295 RKLRRRFESLNKKLGKELAETKHSLLKAVK 324 (433)
Q Consensus 295 Rk~Rrr~E~ln~KL~~ELaE~K~s~~~alk 324 (433)
.=.-+=+| |.-|+..|.+-..++.+|-+
T Consensus 436 QYSQKCLE--nahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 436 QYSQKCLE--NAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33334343 34455555555555555543
No 97
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.04 E-value=1e+02 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=23.2
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 013958 205 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLI 248 (433)
Q Consensus 205 TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~ 248 (433)
+......|+|=||+|.-++..++..-..|...+..-++.+..|.
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~ 72 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQ 72 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567778888885555544444444444444444444333333
No 98
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=65.00 E-value=1.4e+02 Score=28.98 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHH---HHHHHHHHHhHHHHHHhhhH-HHHhHHHHHHHHHHH
Q 013958 257 EISYLMKCFAEEKAAWKNKEREVVE---AAIESIAGELEVERKLRRRF-ESLNKKLGKELAETK 316 (433)
Q Consensus 257 eie~l~KqlaEEk~~wK~KE~eki~---aai~slk~ELe~ERk~Rrr~-E~ln~KL~~ELaE~K 316 (433)
.+..|.+.|..|+..++..|..++. ..|..|...|+.|-+-|-.+ +.+.+.+-..+..+.
T Consensus 13 ~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~ 76 (247)
T PF06705_consen 13 RFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQ 76 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888999999888888765 45777888888887766543 234444444444433
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.61 E-value=1.2e+02 Score=29.59 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQE 250 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E 250 (433)
...+..|+.||..+++.+.++..+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345778888888888777776544
No 100
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.40 E-value=1.7e+02 Score=32.07 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhch-HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 013958 230 VSALHAELERARLQVNQLIQEQ---RSDQ-SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN 305 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~---~s~~-~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln 305 (433)
+.-|+++|+-|++.+.-..+=- ...+ ..|+-..++-.||-++-+.-..+-+...=-.+-.-|+.||..-.. --
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq---~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQ---NE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHH---HH
Confidence 5667777777777654433211 1111 236666666666666555544444444444444557777654443 34
Q ss_pred HHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 306 KKLGKELAETKHSLLK--AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 306 ~KL~~ELaE~K~s~~~--alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~ 364 (433)
.++-+|+...+.-++. ..-+||+|++-+.=.++--.|+.. -.+.||.+||.+..+.
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~a 174 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAKA 174 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHhH
Confidence 6788888888888887 888999998766544444445443 3566777777765554
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.82 E-value=3.7e+02 Score=33.49 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=7.3
Q ss_pred HHHHhhhcccHHHHHHHHH
Q 013958 341 DELARDINDDKSEVEELKR 359 (433)
Q Consensus 341 dELAk~I~e~kaEve~lKr 359 (433)
+++-..+.++..++..+..
T Consensus 393 eeLqeqLaelqqel~elQ~ 411 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQT 411 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444433333
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.75 E-value=1.7e+02 Score=34.44 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=62.7
Q ss_pred ccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH-----HH
Q 013958 194 TRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA-----EE 268 (433)
Q Consensus 194 ~rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla-----EE 268 (433)
+++.+....++|-++.+.+++.-. -..||-|+-|+++|..-+.-...|..|++--.+.+...--... -.
T Consensus 458 ~kl~Dvr~~~tt~kt~ie~~~~q~------e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 458 GKLQDVRVDITTQKTEIEEVTKQR------ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred hhhhhheeccchHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 355666677777766666555432 2456777777777777777777777777654443332211110 11
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh-hHHHHhHHH
Q 013958 269 KAAWKNKEREVVEAAIESIAGELEVERKLRR-RFESLNKKL 308 (433)
Q Consensus 269 k~~wK~KE~eki~aai~slk~ELe~ERk~Rr-r~E~ln~KL 308 (433)
-+-....+.|-|+.+|.+--+||+.|..... .++++|--|
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1222344567788888888888887765432 344444433
No 103
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=62.66 E-value=1.5e+02 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=15.2
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCC
Q 013958 195 RLKDVSNALTTSKELLKIINRMWGQEDRPS 224 (433)
Q Consensus 195 rlk~~~~~L~TS~ELlkvlnriw~leeq~~ 224 (433)
=++.+.+++.+-+||..++.-==.+|+..+
T Consensus 10 l~~r~~~g~~~~~el~~f~keRa~iE~eYa 39 (236)
T cd07651 10 IQTRIKDSLRTLEELRSFYKERASIEEEYA 39 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665543323444443
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.62 E-value=2e+02 Score=29.97 Aligned_cols=214 Identities=17% Similarity=0.169 Sum_probs=106.3
Q ss_pred cccccccchhchHHHHH-------HHHhh-cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 195 RLKDVSNALTTSKELLK-------IINRM-WGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 195 rlk~~~~~L~TS~ELlk-------vlnri-w~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
.|.-.++.+...+-||. .-.+| -+|.+++..=+--+.+|..+|..+..+|.+|-+|-.. +.++=++.-.-.
T Consensus 56 qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ 134 (306)
T PF04849_consen 56 QMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDD 134 (306)
T ss_pred hhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHh
Confidence 34335555555555442 23444 3455665544556788999999999999999998754 333333333333
Q ss_pred HHHHHhhhhHHH---HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013958 267 EEKAAWKNKERE---VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 343 (433)
Q Consensus 267 EEk~~wK~KE~e---ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL 343 (433)
||-..--+-.-. .....-..-..-|+.=++-=|.+|.-|..|-.|-+..+..... | |.+.+.||.+.+.+|
T Consensus 135 ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~----~--EekEqqLv~dcv~QL 208 (306)
T PF04849_consen 135 EESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDT----Y--EEKEQQLVLDCVKQL 208 (306)
T ss_pred hhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh----c--cHHHHHHHHHHHHHh
Confidence 322111110000 0000000000112222233345666777777776665544332 2 444666666544444
Q ss_pred --------------Hhhhcc---cHHHHHHHHHHhHHHHHH-----HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhh
Q 013958 344 --------------ARDIND---DKSEVEELKRESAIALEE-----VEKEREMIQVADVLREERAQIKLSEAKYQLEEKN 401 (433)
Q Consensus 344 --------------Ak~I~e---~kaEve~lKres~k~~eE-----~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~ 401 (433)
|+...+ ...||..|..+......- +|.|-.-.|+... --.|+.|..==..|.+||
T Consensus 209 ~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s---ke~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 209 SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS---KESQRQLQAELQELQDKY 285 (306)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 433222 233333333332222111 2233333333332 246677655556888999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013958 402 AAVDKLRSQLEAFSRNQ 418 (433)
Q Consensus 402 s~ldkL~~elE~FL~sk 418 (433)
+.+-.|=.|-+.=|++-
T Consensus 286 ~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 286 AECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99888877777666553
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.14 E-value=3.3e+02 Score=32.39 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013958 306 KKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIN 348 (433)
Q Consensus 306 ~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~ 348 (433)
..|..+=.+...-+....|.+|....+-.=++++--+|+..|.
T Consensus 434 t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le 476 (980)
T KOG0980|consen 434 TELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLE 476 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666666655555555555544
No 106
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.83 E-value=1.8e+02 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.6
Q ss_pred HhHHHHHHhHhhh
Q 013958 370 KEREMIQVADVLR 382 (433)
Q Consensus 370 eER~MLqmAEvWR 382 (433)
+|+++..|.|.|.
T Consensus 215 eE~Ri~~l~e~~~ 227 (252)
T cd07675 215 DERRTVKLSECYR 227 (252)
T ss_pred HHHHHHHHHHHHH
Confidence 5788888888887
No 107
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=61.82 E-value=1.1e+02 Score=26.59 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 013958 275 KEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAET 315 (433)
Q Consensus 275 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~ 315 (433)
.+..++..++.++.++|.+.++-|.++-..|+-|+.|+-+.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l 43 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLEL 43 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999998753
No 108
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=61.68 E-value=2.2e+02 Score=30.09 Aligned_cols=35 Identities=6% Similarity=0.161 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013958 316 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 350 (433)
Q Consensus 316 K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~ 350 (433)
-.+..+.+.|+++.|..+.-|+.+-++++.++...
T Consensus 345 ~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l 379 (412)
T PF04108_consen 345 LSAYDSLLLEVERRRAVRDKMKKIIREANEELDKL 379 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888877777776654
No 109
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=61.57 E-value=1.7e+02 Score=28.72 Aligned_cols=96 Identities=17% Similarity=0.277 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhH
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARV-------VIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD 379 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRe-------llE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAE 379 (433)
-+..+|..+..||+...+-||+-|..=+ .|-+-+.+....|...+.-...||..+..-. +.-=-.|++
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL-----~~ANeei~~ 154 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKL-----EKANEEIAQ 154 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3778899999999999999987654422 2233333444444444444445544433111 111122344
Q ss_pred hhhH------------HhhhhhhhHhhhhhhhhhHHHHHH
Q 013958 380 VLRE------------ERAQIKLSEAKYQLEEKNAAVDKL 407 (433)
Q Consensus 380 vWRE------------ERVQMKL~eAk~~leeK~s~ldkL 407 (433)
+++. -+.||++.--.-.|+.|.-..+.|
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 245666665555666665444433
No 110
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=61.03 E-value=60 Score=29.00 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013958 274 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 342 (433)
Q Consensus 274 ~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdE 342 (433)
.++.+.+.+.+......++.....-+.+-.|..|..+||+++|........+|-.-.+.= .+--.|--
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL-~v~a~C~~ 73 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRL-RVKATCPA 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceE-EEeccCCC
Confidence 345667777788888889999999999999999999999999999999888888775422 24446665
No 111
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.95 E-value=3.4e+02 Score=32.01 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=42.7
Q ss_pred HHHHHHHhhhcccHHHHHHHHH--HhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 013958 338 QVCDELARDINDDKSEVEELKR--ESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS 415 (433)
Q Consensus 338 ~vCdELAk~I~e~kaEve~lKr--es~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL 415 (433)
.-|.+-..++.+..-|--.|-- |..++. |++++ --+|-+.|+| +|..-|..||||.... -.++|.|.
T Consensus 1101 ~qce~ni~EL~qlQNEKchlLvEhEtqklK-elde~--h~~~~~~w~e-----~l~~rk~~lee~~~~~---~reqE~f~ 1169 (1187)
T KOG0579|consen 1101 EQCEENIIELDQLQNEKCHLLVEHETQKLK-ELDEK--HHEMRELWQE-----NLIARKTVLEEKFEDE---LREQEVFY 1169 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHH-----hhhhhhhHHHHHHHHH---HHHHHHHh
Confidence 3477766666665555443332 233332 34433 3467789975 7888888999986543 45889997
Q ss_pred hh
Q 013958 416 RN 417 (433)
Q Consensus 416 ~s 417 (433)
.-
T Consensus 1170 ~m 1171 (1187)
T KOG0579|consen 1170 GM 1171 (1187)
T ss_pred cc
Confidence 53
No 112
>PRK03918 chromosome segregation protein; Provisional
Probab=60.88 E-value=2.8e+02 Score=31.13 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=3.5
Q ss_pred eeecccc
Q 013958 41 ILIGKRG 47 (433)
Q Consensus 41 ilvgkrg 47 (433)
+++|..|
T Consensus 27 ~i~G~nG 33 (880)
T PRK03918 27 LIIGQNG 33 (880)
T ss_pred EEEcCCC
Confidence 4455554
No 113
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.65 E-value=2.5e+02 Score=30.52 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=35.0
Q ss_pred ccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH
Q 013958 200 SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 267 (433)
Q Consensus 200 ~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 267 (433)
..+|-.+..-+.+|..+-++. .-..-+..+..++..++..++++..+......+++.+.-++.|
T Consensus 137 ~~~l~~~~~~~~lLD~~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 137 QQLLFRPDEQRQLLDTFAGAN----EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHhcCHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445556666666776665421 1112234445566666666666666655555666666555443
No 114
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.32 E-value=1.2e+02 Score=34.43 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHH
Q 013958 272 WKNKEREVVEAAIESIAGELEVERK 296 (433)
Q Consensus 272 wK~KE~eki~aai~slk~ELe~ERk 296 (433)
|+++|-+-...-|..|..+|+.+++
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.99 E-value=3.8e+02 Score=32.32 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=66.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013958 270 AAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 349 (433)
Q Consensus 270 ~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e 349 (433)
..||+| |-..+-+|..||-++|+.-+.+-..-.++..||+|+--++.=+. =.+++.|+=.|-|-.++.-
T Consensus 268 qEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaT-------ldKEmAEERaesLQ~eve~ 336 (1243)
T KOG0971|consen 268 QEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMAT-------LDKEMAEERAESLQQEVEA 336 (1243)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHH
Confidence 456664 55667789999999999999999999999999999877654433 2355666667777777777
Q ss_pred cHHHHHHHHHHhHHHHHHHHH
Q 013958 350 DKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 350 ~kaEve~lKres~k~~eE~ee 370 (433)
.+..|++|--+.+-+..|+++
T Consensus 337 lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777777766666666653
No 116
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=59.67 E-value=1.6e+02 Score=35.23 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=4.4
Q ss_pred hHHhhhhhc
Q 013958 109 LAATLWEMN 117 (433)
Q Consensus 109 LaA~LWei~ 117 (433)
||..||+|-
T Consensus 229 LG~ILYELL 237 (1021)
T PTZ00266 229 LGCIIYELC 237 (1021)
T ss_pred HHHHHHHHH
Confidence 455555543
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.03 E-value=1.4e+02 Score=26.93 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 267 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 267 (433)
|-|+.+..|+...+.++..|.+++.....||-.|+....+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888888899999999988888888887776544
No 118
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=58.61 E-value=2.3e+02 Score=29.39 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 013958 223 PSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 268 (433)
Q Consensus 223 ~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 268 (433)
+.++--+=.-|.++|+++..+.+.|+.+.+..+-|++.+-.++..-
T Consensus 40 QegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q 85 (333)
T KOG1853|consen 40 QEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ 85 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556678899999999999999999888887777766555443
No 119
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=58.33 E-value=2.4e+02 Score=29.49 Aligned_cols=105 Identities=19% Similarity=0.345 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHh
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLN 305 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln 305 (433)
.++-.++.+|.+|+.+|+|+++-.+..+..+...+-+- .+|+++ -+..| =-=+|++++.++
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~--------------QlqsE---N~LLrQQLddA~ 241 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS--------------QLQSE---NMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHH---HHHHHHHHHHHH
Confidence 35678888999999999999988887776666555332 233322 11111 123566666666
Q ss_pred HHH-HHH--HHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 013958 306 KKL-GKE--LAETKHSLLKAVKDLDTEKRARVV-IEQVCDELARDIND 349 (433)
Q Consensus 306 ~KL-~~E--LaE~K~s~~~alkelE~ERkaRel-lE~vCdELAk~I~e 349 (433)
.|- .+| +.++.--|...++.|--+.....+ ||+=-.||..+...
T Consensus 242 ~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~ 289 (305)
T PF14915_consen 242 NKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNH 289 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 665 244 566666666666665555444333 45544444444433
No 120
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.49 E-value=69 Score=35.15 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958 305 NKKLGKELAETKHSLLKAVKDLDTE 329 (433)
Q Consensus 305 n~KL~~ELaE~K~s~~~alkelE~E 329 (433)
|..+-+||..+..++.+|-++||--
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444467777777777777777653
No 121
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=57.22 E-value=4e+02 Score=31.77 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=67.4
Q ss_pred ccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHH
Q 013958 200 SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREV 279 (433)
Q Consensus 200 ~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~ek 279 (433)
..+...++++++|||..-.-.=.++...+.|.-+..+|.+-++.|++-+++--.++..++.- ....++++-..-|--.
T Consensus 153 t~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r--~~~~~rl~~l~~elr~ 230 (984)
T COG4717 153 TSGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESR--RAEHARLAELRSELRA 230 (984)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 34566789999999998643445777789999999999999999999988888887776653 3344555555555555
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 013958 280 VEAAIESIAGELEVERKL 297 (433)
Q Consensus 280 i~aai~slk~ELe~ERk~ 297 (433)
++..|+.+.+.++.=..+
T Consensus 231 ~~~~i~~~~~~v~l~~~l 248 (984)
T COG4717 231 DRDHIRALRDAVELWPRL 248 (984)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 555566555555544333
No 122
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.01 E-value=3.6e+02 Score=31.09 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhHHHHHHhh
Q 013958 255 QSEISYLMKCFAEEKAAWK 273 (433)
Q Consensus 255 ~~eie~l~KqlaEEk~~wK 273 (433)
..+++.|+..+.+++..+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e 533 (782)
T PRK00409 515 KEKLNELIASLEELERELE 533 (782)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3357777777776665443
No 123
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=56.47 E-value=1.9e+02 Score=27.83 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR--ARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERk--aRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
|.+.|+.=.+++..++.+....-.+|.+++.-....+.+...+-+ ...+++++=.++.+-+.+-+.+++..|.+
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777777777777766666655544322 23455555566666666666666665554
No 124
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.55 E-value=2.6e+02 Score=29.05 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 324 KDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 324 kelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
.+....+....-+-+=..+||.++.+|..++-.+-++.+.++.+.+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445567777777777777777777766665544
No 125
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=54.98 E-value=2.8e+02 Score=29.23 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER-EVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~-eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
+...+..=+..|...+..|.............++.-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..+
T Consensus 311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~ 390 (432)
T smart00498 311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQ 390 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666688888899999888888888888888888877543110111 345555555555555554444445556666
Q ss_pred HHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHH
Q 013958 308 LGKELAETKHS-----LLKAVKDLDTEKRARVVIEQVCDEL 343 (433)
Q Consensus 308 L~~ELaE~K~s-----~~~alkelE~ERkaRellE~vCdEL 343 (433)
+++|..+-... -.+.+.+...++.....|..||.++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 391 LVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 66666654442 1345667777778888888888775
No 126
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.38 E-value=1.6e+02 Score=29.35 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
|..|.+.++.-..+.-.++|+..+.=+-.++=-++|-|.+.+...|...|..++.+.+++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444444444444455555555544444555555555555556666666666666666554
No 127
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.31 E-value=1.4e+02 Score=25.56 Aligned_cols=50 Identities=34% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 363 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k 363 (433)
++-+-|.+...-...|++..+.|.+.+.-.+. +|....+++..|+.+..+
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~-------ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEA-------EIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44444555555666677777777766654443 444444455555444333
No 128
>PRK14139 heat shock protein GrpE; Provisional
Probab=54.26 E-value=93 Score=29.95 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 282 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~a 282 (433)
+..|+.+|+..+.++.+|........-+++.+.|....|+...+.--.+++-.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~ 86 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAE 86 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888877777777788888888887775444433333333
No 129
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.26 E-value=4e+02 Score=30.80 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHHHHh
Q 013958 284 IESIAGELEVERKLR 298 (433)
Q Consensus 284 i~slk~ELe~ERk~R 298 (433)
++.+...++.-+..+
T Consensus 568 ~~~l~~~~~~~~~~~ 582 (908)
T COG0419 568 LQELKELLEELRLLR 582 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 130
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=54.13 E-value=2e+02 Score=27.39 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 013958 286 SIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 365 (433)
Q Consensus 286 slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~ 365 (433)
.++.=.++-++.|++.+....||.+++...-..+.++.+.|+..-+.-+-...-.+.......-.+.+++.++....+..
T Consensus 95 ~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~ 174 (251)
T cd07653 95 ELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKT 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHH
Confidence 34444444578888899999999999999888888888888877666555554444433333334456666665555443
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=53.98 E-value=1e+02 Score=35.05 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHH
Q 013958 324 KDLDTEKRARVVIE 337 (433)
Q Consensus 324 kelE~ERkaRellE 337 (433)
+-||+||-.|+.||
T Consensus 663 QrLERErmErERLE 676 (940)
T KOG4661|consen 663 QRLERERMERERLE 676 (940)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 132
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.51 E-value=3.2e+02 Score=29.54 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 013958 233 LHAELERARLQVNQLIQEQRS 253 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s 253 (433)
+..-+.+|..+|..|..+...
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~ 269 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAE 269 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666554433
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=53.12 E-value=2.2e+02 Score=27.44 Aligned_cols=119 Identities=23% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch-----------------HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQ-----------------SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 292 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~-----------------~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe 292 (433)
|.-|+.+|..++..+.+|..|.+.-+ .++..++.+..+|-..|+.+=... -..+=+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~-------q~~~r~ 86 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKS-------QEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 293 VERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 293 ~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
.|++++..-+.+.+ +...++.|+.--..+.|.| +++|...+...+.+++.-.+....+--.++
T Consensus 87 ~~~klk~~~~el~k------------~~~~l~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 87 LERKLKDKDEELLK------------TKDELKHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=52.80 E-value=82 Score=30.66 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013958 280 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 343 (433)
Q Consensus 280 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL 343 (433)
|..-|..+..+++..||. ...-+.|+.+.+.++-.++.+ ++..-+..|+|+
T Consensus 91 ~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leK----------AK~~Y~~~c~e~ 141 (234)
T cd07652 91 MSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEK----------AKARYDSLADDL 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 444456666777766654 667788999998887776655 555556678777
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.76 E-value=3.5e+02 Score=29.69 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhh
Q 013958 368 VEKEREMIQVADVLREERAQIKLSEAKYQLEEK 400 (433)
Q Consensus 368 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK 400 (433)
+|.+-.|+-+-|.-|+-|.+-.|++|..++.-|
T Consensus 107 ~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~ 139 (459)
T KOG0288|consen 107 AEFENAELALREMRRKMRIAERLAEALKDLGLK 139 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 677777887777778888888888887776544
No 136
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.49 E-value=2.7e+02 Score=28.32 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=64.9
Q ss_pred cccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhH
Q 013958 197 KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKE 276 (433)
Q Consensus 197 k~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE 276 (433)
++....+..++.+++-+..-= ..+.| + |=.|--.|-..++.++..+...-+.-.++.-+ ..=..|+.+-
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~-~~~nP----p----Lf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK--~~WYeWR~~l 146 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET-YESNP----P----LFREYYTADPDMRLLMDNQFQLVKTYARLEAK--KMWYEWRMQL 146 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhcCC----H----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 555555555665555443221 12222 2 33344556666777776665433332222211 2345689998
Q ss_pred HHHHHHHHHHHHHHhHHHH-HHhhhHHHHhHHHHHHHHHHHHHHHHHHh
Q 013958 277 REVVEAAIESIAGELEVER-KLRRRFESLNKKLGKELAETKHSLLKAVK 324 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ER-k~Rrr~E~ln~KL~~ELaE~K~s~~~alk 324 (433)
.+-+...++.-.+.|..+. .+....+.++ .+.-+|.+.+.++..-+.
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l~~~~~~L~~e~~ 194 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKLRERKAELEEELE 194 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888888888888887655 4555566665 555666665555554333
No 137
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.06 E-value=4.2e+02 Score=31.24 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHH---------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRRFESLNKKLGK---------------ELAETKHSLLKAVKDLDTEKRARVVIEQVCD 341 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~---------------ELaE~K~s~~~alkelE~ERkaRellE~vCd 341 (433)
+--|.=|+|.|+.|-. .+|||+-.||..|-. ||.-.++--.-.-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3445666777777654 588999999999853 2222222111122234445667777777777
Q ss_pred HHHhhhcccHHHHHHHHHHhHHHHHH-HHHhHHHHHHhHhhhHH
Q 013958 342 ELARDINDDKSEVEELKRESAIALEE-VEKEREMIQVADVLREE 384 (433)
Q Consensus 342 ELAk~I~e~kaEve~lKres~k~~eE-~eeER~MLqmAEvWREE 384 (433)
||-|-|...+.|-- +.... .|.|-.+|+--..|-.|
T Consensus 459 ellk~~e~q~~Enk-------~~~~~~~ekd~~l~~~kq~~d~e 495 (861)
T PF15254_consen 459 ELLKVIENQKEENK-------RLRKMFQEKDQELLENKQQFDIE 495 (861)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777655544433 33322 24455555554444433
No 138
>PRK14158 heat shock protein GrpE; Provisional
Probab=51.68 E-value=1.4e+02 Score=28.86 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 281 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~ 281 (433)
..-.-+..|+.+|+.....+.+|...-....-+++.+.|....|+...+.---+++-
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~ 93 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLI 93 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456778888888888888887777777778888888887776554443333333
No 139
>PRK14145 heat shock protein GrpE; Provisional
Probab=51.63 E-value=1.1e+02 Score=29.71 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 291 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL 291 (433)
.-+..|+.+|+.++..+.+|...-....-+++.+.|....|+...+..--+++-..+-.+-+.|
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnL 108 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNF 108 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 4577888999999999999888888888888888888888875544444444333333333333
No 140
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.50 E-value=5e+02 Score=31.17 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=28.4
Q ss_pred HHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhccCcccch
Q 013958 372 REMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQ 426 (433)
Q Consensus 372 R~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~~~~~~~~ 426 (433)
-+|=.+-+..-+.|-|.|+.+--+ ++ -.++.|+.|+|.+=.--+++.-++|
T Consensus 1066 aemdeik~~~~edrakqkei~k~L-~e---helenLrnEieklndkIkdnne~~Q 1116 (1424)
T KOG4572|consen 1066 AEMDEIKDGKCEDRAKQKEIDKIL-KE---HELENLRNEIEKLNDKIKDNNEGDQ 1116 (1424)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHhhcCCCcch
Confidence 344445555556666666655332 22 3467788888887554444444443
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=51.28 E-value=1.6e+02 Score=31.46 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 013958 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 311 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 311 (433)
-|+.+|-|+|. +...-....+.+|-++.++.||..- ...-++++.. ..+..|.-+..|-+|
T Consensus 110 kL~nqL~~~~~----vf~k~k~~~q~LE~li~~~~EEn~~--------lqlqL~~l~~-------e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 110 KLKNQLFHVRE----VFMKTKGDIQHLEGLIRHLREENQC--------LQLQLDALQQ-------ECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHHH--------HHHhHHHHHH-------HHhHhHHHHHHHHHH
Confidence 35566666554 4445556667788889888888632 3333333333 333445556667777
Q ss_pred HHHHH
Q 013958 312 LAETK 316 (433)
Q Consensus 312 LaE~K 316 (433)
|+|+-
T Consensus 171 LaE~l 175 (401)
T PF06785_consen 171 LAEAL 175 (401)
T ss_pred HHHHH
Confidence 77753
No 142
>PRK14140 heat shock protein GrpE; Provisional
Probab=51.14 E-value=2.4e+02 Score=27.33 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=43.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013958 224 SSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 291 (433)
Q Consensus 224 ~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL 291 (433)
.+..-+|..|..+|+..+..|.+|...-....-+++.+.|....|+...+.---+++-..+-.+-+.|
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888776666666677777777777765554444444444444444444
No 143
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=50.92 E-value=1.9e+02 Score=32.19 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013958 301 FESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQV 339 (433)
Q Consensus 301 ~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~v 339 (433)
++.+=.+|.+||+.++.+.-+++ ++.+.+...+++.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l--~~s~~~v~~l~~~l 39 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSL--LESEKQVNSLMEYL 39 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 56778899999999999998888 44455555555554
No 144
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.48 E-value=1.8e+02 Score=25.79 Aligned_cols=139 Identities=17% Similarity=0.259 Sum_probs=70.4
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 013958 205 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 284 (433)
Q Consensus 205 TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai 284 (433)
|..||-..|+.-= .-+.-..+++-|..+..+++...+.+.+|...--+.+.+++.+..++.+--. .+
T Consensus 5 S~~eL~~Ll~d~~-~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~------------~~ 71 (150)
T PF07200_consen 5 STEELQELLSDEE-KLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE------------EL 71 (150)
T ss_dssp TTHHHHHHHHH-H-HHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH------------HH
T ss_pred CHHHHHHHHcCHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH------------HH
Confidence 4456666655431 2222345566688899999999999888888777777777777766663321 12
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~ 364 (433)
..++.+...= .++...+..+..-.- +..-+ +.+-.-.|+.|++||...-+.+-.|..+-.+
T Consensus 72 ~~L~~~~~~k---~~~~~~l~~~~s~~~--l~~~L----------~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~---- 132 (150)
T PF07200_consen 72 KELESEYQEK---EQQQDELSSNYSPDA--LLARL----------QAAASEAEEESEELAEEFLDGEIDVDDFLKQ---- 132 (150)
T ss_dssp HHHHHHHHHH---HHHHHHHHHCHHHHH--HHHHH----------HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHH----
T ss_pred HHHHHHHHHH---HHHHHHHHccCCHHH--HHHHH----------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH----
Confidence 2222222111 112222233322221 11111 2223345678999999998888888877654
Q ss_pred HHHHHHhHHHHHHh
Q 013958 365 LEEVEKEREMIQVA 378 (433)
Q Consensus 365 ~eE~eeER~MLqmA 378 (433)
.-+-|..-|+=
T Consensus 133 ---f~~~R~~yH~R 143 (150)
T PF07200_consen 133 ---FKEKRKLYHLR 143 (150)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 33445555543
No 145
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=50.07 E-value=2.1e+02 Score=26.47 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh-HHHHHH-hhhHHHHhHHH
Q 013958 255 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-EVERKL-RRRFESLNKKL 308 (433)
Q Consensus 255 ~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL-e~ERk~-Rrr~E~ln~KL 308 (433)
+.||.+|+|.|.+-+--+-.+--..+...|..+.+.+ ..-..+ -.++..+|.+|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4579999999998887777777888888888888665 544444 34666666666
No 146
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.87 E-value=4.6e+02 Score=30.23 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhHHHHHH
Q 013958 255 QSEISYLMKCFAEEKAA 271 (433)
Q Consensus 255 ~~eie~l~KqlaEEk~~ 271 (433)
..+++.++.++.+++..
T Consensus 510 ~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 510 KEEINVLIEKLSALEKE 526 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666543
No 147
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.75 E-value=3.8e+02 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 330 KRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 330 RkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
-+.-.++-.|-.+++..|+.+++....|+..
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 146 VRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666655555555543
No 148
>PRK14156 heat shock protein GrpE; Provisional
Probab=48.93 E-value=91 Score=29.80 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHH
Q 013958 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA 270 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~ 270 (433)
++..+|+..+.++.+|...-.....+++.+.|....|+.
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e 69 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQ 69 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777665555555556666666555543
No 149
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.80 E-value=2.3e+02 Score=26.55 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=50.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL 304 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~l 304 (433)
....-+..|..++..-...|.+|..+....+.++..+--.|.+- .+-.+.+.+.+.++.-++..=-.-.++++.-
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek-----~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK-----NKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677778888888888888888887777777766555543 4456777777777777776655556677777
Q ss_pred hHHHHHHHHHHHH
Q 013958 305 NKKLGKELAETKH 317 (433)
Q Consensus 305 n~KL~~ELaE~K~ 317 (433)
|..|+.-+-+-|.
T Consensus 174 n~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 174 NRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665444
No 150
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=48.41 E-value=2e+02 Score=25.52 Aligned_cols=58 Identities=41% Similarity=0.526 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 303 ~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
.+..++-.+|+-...++.++--=++.-.+.++--+....++-.+|...+.+++.||.+
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444444444444455555544444444444444443
No 151
>PRK14146 heat shock protein GrpE; Provisional
Probab=47.20 E-value=1.3e+02 Score=29.47 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 292 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe 292 (433)
+..|+.+|+.++..+.+|...-....-+++.+.|+...|+...+.---+++-..+-.+-+-|+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnle 118 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLE 118 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 778889999999999999887778888889998888888766665555555555444544444
No 152
>PRK14147 heat shock protein GrpE; Provisional
Probab=47.09 E-value=1.3e+02 Score=28.52 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK 273 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK 273 (433)
.-...|..+|+..+.++.+|...-....-+++.+.|....|+...+
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~ 63 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR 63 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888877777777778888887777764433
No 153
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.91 E-value=2.2e+02 Score=28.16 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH--------HHHhHHH
Q 013958 303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE--------VEKEREM 374 (433)
Q Consensus 303 ~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE--------~eeER~M 374 (433)
+.-..|-.+|++...-.....+-.|++++.|+--|+--|||++.....+.+++.||-+..+.++= +.-+..|
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~ 160 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTM 160 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 33345555666655555556667899999999999999999999998888888888887776531 3345555
Q ss_pred HHHhHhhh
Q 013958 375 IQVADVLR 382 (433)
Q Consensus 375 LqmAEvWR 382 (433)
..-|-.|-
T Consensus 161 ~eaanrwt 168 (203)
T KOG3433|consen 161 AEAANRWT 168 (203)
T ss_pred HHHHhhhh
Confidence 55555554
No 154
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.55 E-value=2.4e+02 Score=26.11 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKC 264 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kq 264 (433)
++.-+.+-+.-..||--|+++-.....+.+++...
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444455555555555555555555555444443
No 155
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.52 E-value=3.8e+02 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013958 229 LVSALHAELERARLQVNQLIQEQRS 253 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s 253 (433)
-+..|+..|..+++++..|.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666543
No 156
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.44 E-value=2.7e+02 Score=26.65 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLG 309 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 309 (433)
|.-+...|..++..+-.++..++....+++..-..+. -| .+++..||+. =|-=||
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~----~~----~~~A~~Al~~-----------------G~EdLA 87 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVA----DW----QEKAELALSK-----------------GREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHC-----------------CCHHHH
Confidence 4555666677777777777666665555444433322 22 2333334333 223366
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
++-.+-|..+...+..|+.+-. -+...+++|-..|.+++.+++.+|..
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~---~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELA---AVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665543 37777888888888888888777665
No 157
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.26 E-value=2.2e+02 Score=25.46 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=58.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL 304 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~l 304 (433)
..|.+|..|-.--++-..+-..|....+....++++|-..+.-= .+++...-+.+..-...++.+...+..+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL--------~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL--------KEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666777777777777777666555432 2233333333333444555555444444
Q ss_pred hHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958 305 NKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 359 (433)
Q Consensus 305 n~KL---~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKr 359 (433)
..++ ..|+.-++. .+..++..++.+|+--+-|++.||.
T Consensus 107 ~~~~k~~kee~~klk~-----------------~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 107 EAKLKQEKEELQKLKN-----------------QLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 333333333 4455555555555555556666664
No 158
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.88 E-value=3.2e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~E 290 (433)
-+..|+.+|...+..+.+|...-....-+++.|.|+...|+...+..-.+++-..|-.+-+-
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDN 129 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35677777877777887776666666667777777777776544444444433333333333
No 159
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.49 E-value=2.5e+02 Score=26.00 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF 265 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 265 (433)
-|-+|..||+-++..--.++.+--..+.+|..|--++
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el 61 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEEL 61 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777887777777777777777777777764443
No 160
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=45.28 E-value=1.9e+02 Score=24.56 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHH
Q 013958 240 ARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSL 319 (433)
Q Consensus 240 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~ 319 (433)
|.....++...+...-..++..+-++.-|+ +|+..+..++-.+ ++-|..|-+.=+..-.=|..+...|.++...|
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek----~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~ 85 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEK----AKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEF 85 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333344444444555666666664 5566666666554 45577776655566667888999999999999
Q ss_pred HHHHhHHHHH
Q 013958 320 LKAVKDLDTE 329 (433)
Q Consensus 320 ~~alkelE~E 329 (433)
...++++|+|
T Consensus 86 ~~~l~~~Eke 95 (96)
T PF08647_consen 86 VRKLKNLEKE 95 (96)
T ss_pred HHHHHHhhcc
Confidence 9999999876
No 161
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=45.25 E-value=28 Score=39.39 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHH-------HHhHHHHHHhH--------hhhHH-hhhhhhhHhhhh-
Q 013958 334 VVIEQVCDELARDINDDKSEVEELKRESAIALEEV-------EKEREMIQVAD--------VLREE-RAQIKLSEAKYQ- 396 (433)
Q Consensus 334 ellE~vCdELAk~I~e~kaEve~lKres~k~~eE~-------eeER~MLqmAE--------vWREE-RVQMKL~eAk~~- 396 (433)
++.|+.-+.+++.|.+.++|+|.||.+++|..+.+ +-|+++=-..+ .||=| |+-|--.|--..
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~ 439 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPV 439 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcc
Confidence 45566666667778899999999999999876553 23555444444 89855 222211111111
Q ss_pred --hhhhh-HHHHHHHHHHHHHHhhhc
Q 013958 397 --LEEKN-AAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 397 --leeK~-s~ldkL~~elE~FL~sk~ 419 (433)
.+.|. .-||....++|+-|..+-
T Consensus 440 ~~~~~k~k~~VDDIV~eVE~slGrki 465 (669)
T PF08549_consen 440 EQSENKPKYKVDDIVAEVEKSLGRKI 465 (669)
T ss_pred cccCccccccHHHHHHHHHHHhCCee
Confidence 11121 248999999999887653
No 162
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.77 E-value=3.9e+02 Score=27.98 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhchHHHHHHHHH--hHHH----HHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh
Q 013958 230 VSALHAELERARLQVNQ----LIQEQRSDQSEISYLMKC--FAEE----KAAWKNKEREVVEAAIESIAGELEVERKLRR 299 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~e----L~~E~~s~~~eie~l~Kq--laEE----k~~wK~KE~eki~aai~slk~ELe~ERk~Rr 299 (433)
|.-|+.|||.-+.+-.+ ...+-...+...+.|-+- +.|| ...+-+.+-.-+.|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 56788888876655443 233333333344444432 3344 2334455555555555667788999999888
Q ss_pred hHH----HHhHHHHHHHHHH
Q 013958 300 RFE----SLNKKLGKELAET 315 (433)
Q Consensus 300 r~E----~ln~KL~~ELaE~ 315 (433)
|+| +...+|+..+.|.
T Consensus 88 rLEtEiES~rsRLaaAi~d~ 107 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDH 107 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 765 4455555544443
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.74 E-value=4.8e+02 Score=28.96 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 239 RARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 239 ~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
..+.++.+|..+......+++.+-++|+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777766666667776666664
No 164
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=44.36 E-value=1.7e+02 Score=24.75 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHh
Q 013958 337 EQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSR 416 (433)
Q Consensus 337 E~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~ 416 (433)
-.++..|.++..-|+.|+..-.....++..+-.++- ++...+ .=|.|.+.-|-+=..-|.....+|+.||.
T Consensus 6 t~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~-~iKkq~--------~vl~Et~~mipd~~~RL~~a~~~L~~~l~ 76 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEY-DIKKQE--------EVLEETKMMIPDCQQRLEKAVEDLEEFLE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888887777776633332 222222 22344555556666677778888999988
Q ss_pred hhcc
Q 013958 417 NQKG 420 (433)
Q Consensus 417 sk~~ 420 (433)
+..+
T Consensus 77 ~~~~ 80 (90)
T PF02970_consen 77 EEEG 80 (90)
T ss_dssp HHHC
T ss_pred HCcC
Confidence 8765
No 165
>PRK14151 heat shock protein GrpE; Provisional
Probab=44.24 E-value=2.9e+02 Score=26.30 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~E 290 (433)
.+-+..|+.+++..+.++.+|...-.....+++.+.|+...|+...+.--.+++-..+-.+-+-
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dn 82 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDS 82 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3567788888888888888887666666667777777777776444443333333333333333
No 166
>PLN03188 kinesin-12 family protein; Provisional
Probab=43.36 E-value=7.4e+02 Score=30.79 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 013958 220 EDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQS 256 (433)
Q Consensus 220 eeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~ 256 (433)
.|-++--|||.--|++||+-.|..+.+|..|-..+++
T Consensus 1057 ~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1057 TEAESKWISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred HHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555666788888888888888888888877776665
No 167
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.05 E-value=6.5e+02 Score=30.05 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=36.3
Q ss_pred hHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Q 013958 300 RFESLNKKL---GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRES 361 (433)
Q Consensus 300 r~E~ln~KL---~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres 361 (433)
++|.||-|+ ---|.|+..-+-++..++|.-++.|+++-.--|+|-..|.|+.+.+-.|-.|.
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345555553 22345555556666666666666666666666666666666666555544443
No 168
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.96 E-value=7e+02 Score=30.36 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 293 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ 293 (433)
.+-+..-.|++|+..-.+++..|++|..++.+..+-.-.|... .+++.+...+.|+.+++.+..
T Consensus 170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 170 LAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4446678899999999999999999999887765555444422 234455566666666666554
No 169
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.72 E-value=1.3e+02 Score=26.31 Aligned_cols=63 Identities=30% Similarity=0.361 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 013958 236 ELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAET 315 (433)
Q Consensus 236 EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~ 315 (433)
+|...+.+..++++++.....|++.|...|-+|- . .+| .++|+-|-.+|.-|..|.+.|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA-------N----~MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA-------N----KMV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888889999988887774 1 122 567888888888888888887775
Q ss_pred H
Q 013958 316 K 316 (433)
Q Consensus 316 K 316 (433)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 170
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.61 E-value=3.4e+02 Score=26.38 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 013958 207 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIES 286 (433)
Q Consensus 207 ~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~s 286 (433)
++|.|.+.-.=.-| +.||-.+|.. |.-+-+.|.++.+++ ++.+..+|.|.-...-.- ---++..+..
T Consensus 42 ~~fak~~~~la~~E-----~~~L~~~L~~-lae~~~~i~d~~q~q------v~~l~~~v~epLk~Y~~l-~k~~k~~~K~ 108 (211)
T cd07598 42 DELAKSINAYADTE-----NPSLKQGLKN-FAECLAALQDYRQAE------VERLEAKVVQPLALYGTI-CKHARDDLKN 108 (211)
T ss_pred HHHHHHHHHHHhcc-----CHHHHHHHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 67777777664334 3455555543 455555666555544 444444444432111000 0000111110
Q ss_pred HHHHhHHHHHHhhhHHHH---hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958 287 IAGELEVERKLRRRFESL---NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD 341 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~l---n~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCd 341 (433)
...-=+.|.+.+.++|.+ |.---.++++++..+.+|-.|++ |-.+.|.|+|.+
T Consensus 109 ~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~--r~s~~l~ee~~r 164 (211)
T cd07598 109 TFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDAN--RSTKELEEQMDN 164 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 111122333344555555 21112277788888888887664 455556555554
No 171
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.25 E-value=3.1e+02 Score=30.21 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK 296 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk 296 (433)
|..|-.++..-|.++..|+.+...-+.|-+.|.++-. .-..+|..+|+..+.||..|+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~--------~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ--------SIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHhhhHHHHHHHH
Confidence 5777788888888888888888877777776654332 2366788888888877776653
No 172
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=41.25 E-value=3.6e+02 Score=26.52 Aligned_cols=39 Identities=8% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013958 294 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 332 (433)
Q Consensus 294 ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka 332 (433)
=+..|+..-..+.+|..||..+-..+.++.+.|++.-+.
T Consensus 103 ~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e 141 (237)
T cd07657 103 KRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLED 141 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888899888888888888888888776553
No 173
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=41.14 E-value=8.9 Score=34.25 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHH
Q 013958 283 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLL 320 (433)
Q Consensus 283 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~ 320 (433)
-++.+..+|..|+=.|+.+|.+|.-|++||+.+|..+-
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l 103 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELL 103 (108)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999987654
No 174
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=41.09 E-value=3.5e+02 Score=26.38 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHhhhchHHHHHHHHHh---------HHHHHHhhhhHHHHHHHHHH-----------
Q 013958 227 MSLVSALHAEL-ERARLQVNQLIQEQRSDQSEISYLMKCF---------AEEKAAWKNKEREVVEAAIE----------- 285 (433)
Q Consensus 227 ~Slv~aL~~EL-~~Ar~~I~eL~~E~~s~~~eie~l~Kql---------aEEk~~wK~KE~eki~aai~----------- 285 (433)
..+...|..|+ .--+.-+.++.++++.....++.+.|.+ +-....-..||.|+....+.
T Consensus 79 ~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~ 158 (239)
T cd07658 79 RNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKM 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q ss_pred ---HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH
Q 013958 286 ---SIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVV-IEQVCDEL 343 (433)
Q Consensus 286 ---slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRel-lE~vCdEL 343 (433)
.-++..--.+.+.+ ++.-.+|...+...+...+..++.+|+.-+..++- |.++||.|
T Consensus 159 ~~~~~k~~~~~~k~~~K-l~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (239)
T cd07658 159 LNKLKKSAEVQDKEDEK-LEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQY 219 (239)
T ss_pred HhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 175
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=40.58 E-value=1.1e+02 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHhhhHHHHh
Q 013958 284 IESIAGELEVERKLRRRFESLN 305 (433)
Q Consensus 284 i~slk~ELe~ERk~Rrr~E~ln 305 (433)
|++|..+|+.|.+.+.=+|.+=
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~ 24 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENML 24 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555443
No 176
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.40 E-value=6.6e+02 Score=29.35 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchH--HHHHHHHHh---HHHHHHhhhhHHHHHHHHHHHHHHHhHHHH-HHhhhHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQS--EISYLMKCF---AEEKAAWKNKEREVVEAAIESIAGELEVER-KLRRRFE 302 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~--eie~l~Kql---aEEk~~wK~KE~eki~aai~slk~ELe~ER-k~Rrr~E 302 (433)
-+.+|+.+|+-|-.+ .+..|.+..+= -+..-|+|| .||. ..+|+.+|--.-.|.+..| .+-.++.
T Consensus 25 e~~~lk~~l~~~~~~--~~~~e~r~~hld~aLkec~~qlr~~ree~-------eq~i~~~~~~~s~e~e~~~~~le~~l~ 95 (769)
T PF05911_consen 25 EAASLKQQLEAATQQ--KLALEDRVSHLDGALKECMRQLRQVREEQ-------EQKIHEAVAKKSKEWEKIKSELEAKLA 95 (769)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHhhhhhHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467788888877432 22222222211 122234433 3332 3345555544444444444 4445555
Q ss_pred HHhHHHHHHHHH
Q 013958 303 SLNKKLGKELAE 314 (433)
Q Consensus 303 ~ln~KL~~ELaE 314 (433)
.++.+|..-=+|
T Consensus 96 e~~~~l~~~~~e 107 (769)
T PF05911_consen 96 ELSKRLAESAAE 107 (769)
T ss_pred HHHHHHHHHHhh
Confidence 666666444333
No 177
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=40.37 E-value=3.1e+02 Score=26.56 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh--------HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRR--------FESLNKKLGKELAETKHSLLKAVKDLDTEKRAR 333 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr--------~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaR 333 (433)
--+.+|.+..++..|++.|+.=++ .|.-=..|...+.++-..+..-++++|..+|..
T Consensus 44 aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~ 108 (215)
T PF07083_consen 44 AKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEE 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777775433 333344566666666667777777777666553
No 178
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.27 E-value=7.2e+02 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=21.5
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHH
Q 013958 264 CFAEEKAAWKNKEREVVEAAIESIAGELEVER 295 (433)
Q Consensus 264 qlaEEk~~wK~KE~eki~aai~slk~ELe~ER 295 (433)
+..+|+..|-..|+.+|.+++..-..-+.+-.
T Consensus 715 ~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~ 746 (988)
T KOG2072|consen 715 RQEEDRELYEAREKQRIEAAIAERESAVKDKK 746 (988)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888877766544444433
No 179
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=40.21 E-value=1e+02 Score=27.66 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK 273 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK 273 (433)
+..|..+|...+.++.+|...-.....+++.+.+.+..++...+
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~ 56 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAK 56 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444455555555554443333
No 180
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=39.14 E-value=2.6e+02 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 013958 321 KAVKDLDTEKRARVVIEQVCDELARDIN 348 (433)
Q Consensus 321 ~alkelE~ERkaRellE~vCdELAk~I~ 348 (433)
++-++|..+|+...+|-.|---+.-|-|
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444666677777777777666655544
No 181
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=39.11 E-value=2.7e+02 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 013958 333 RVVIEQVCDELARDIND 349 (433)
Q Consensus 333 RellE~vCdELAk~I~e 349 (433)
++..|.+|..+++-|.|
T Consensus 121 ~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 121 AEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666666665544
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.10 E-value=5.8e+02 Score=28.33 Aligned_cols=65 Identities=32% Similarity=0.307 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHH--HHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYL--MKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 311 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l--~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 311 (433)
+++|..-+....++++|..+.+.+...+ .+++.|.|+. +...-+..+..||.+|| -+|.+|.+.
T Consensus 346 qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~-------q~q~k~~k~~kel~~~~-------E~n~~l~kn 411 (493)
T KOG0804|consen 346 QSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQ-------QLQTKLKKCQKELKEER-------EENKKLIKN 411 (493)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHhh
Confidence 3577777778888888887766655554 4566666643 33444556777777776 466666665
Q ss_pred H
Q 013958 312 L 312 (433)
Q Consensus 312 L 312 (433)
+
T Consensus 412 q 412 (493)
T KOG0804|consen 412 Q 412 (493)
T ss_pred H
Confidence 4
No 183
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=38.81 E-value=65 Score=33.93 Aligned_cols=52 Identities=33% Similarity=0.411 Sum_probs=39.6
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013958 195 RLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQE 250 (433)
Q Consensus 195 rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E 250 (433)
|+++.+++|.. +.+=|.+..|..|--..||||+.|+.||-.-+++...+..-
T Consensus 194 rv~kAs~~L~~----yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~ 245 (372)
T COG3524 194 RVKKASNDLTD----YRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSV 245 (372)
T ss_pred HHHHHHhHHHH----HHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444432 45678899999998899999999999999988887776543
No 184
>PRK14148 heat shock protein GrpE; Provisional
Probab=38.77 E-value=2.3e+02 Score=27.57 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 308 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 308 (433)
-+.+|..+|...+..+.+|...-....-+++.+.|....|+...+. -.+.++
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~----------------------------~a~~~~ 92 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK----------------------------FGIEKF 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 3566777777777777777655555556666666666655533322 234566
Q ss_pred HHHHHHHHHHHHHHHh
Q 013958 309 GKELAETKHSLLKAVK 324 (433)
Q Consensus 309 ~~ELaE~K~s~~~alk 324 (433)
+++|..+--.|..|+.
T Consensus 93 ~~~LLpV~DnlerAl~ 108 (195)
T PRK14148 93 AKELLPVIDSIEQALK 108 (195)
T ss_pred HHHHhhHHhHHHHHHh
Confidence 6666666666655554
No 185
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.76 E-value=2.2e+02 Score=23.36 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958 295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 329 (433)
Q Consensus 295 Rk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~E 329 (433)
+-.-+..-....||.+++..+-..|.++.+.+..-
T Consensus 63 ~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~ 97 (102)
T PF14523_consen 63 RSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEK 97 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566788888888777777777766543
No 186
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.75 E-value=2.2e+02 Score=23.31 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
-+++..|.-.|+....+|++|.+.+..-...|+.+-..|.+-.. -+.+.+.+.-+. =...=...|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~------~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE------VEQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999998877777777777765542 122222221111 12222356888888888
Q ss_pred HHHH
Q 013958 307 KLGK 310 (433)
Q Consensus 307 KL~~ 310 (433)
++.+
T Consensus 79 ~l~~ 82 (92)
T PF14712_consen 79 RLQK 82 (92)
T ss_pred HHHH
Confidence 8754
No 187
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.47 E-value=8.2e+02 Score=29.88 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHH------HHHHHHHhHHHHHHhhhHHHHh
Q 013958 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA------IESIAGELEVERKLRRRFESLN 305 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aa------i~slk~ELe~ERk~Rrr~E~ln 305 (433)
-+..+|+.++..+..|..+.. ++++.++-+-+||..-+..+.+-++.- |.++.++++.++.-|......+
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l 330 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL 330 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence 455567778888887777654 577777777888877766665555443 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 013958 306 KKLGKELAETKHSLLKAVKDL 326 (433)
Q Consensus 306 ~KL~~ELaE~K~s~~~alkel 326 (433)
.++..++.+-+--+++-...|
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 999887777776666655444
No 188
>PRK04654 sec-independent translocase; Provisional
Probab=38.40 E-value=2.4e+02 Score=28.11 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 303 SLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 303 ~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
.+=+.|++=+.++|..+..+..++++|=+.. ||-+.+.++++++..++.+......|++
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~~~--------ELrk~l~~~~~~i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELEAE--------ELKRSLQDVQASLREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667777777777777665542 3333444444444444444444444444
No 189
>PRK01156 chromosome segregation protein; Provisional
Probab=37.80 E-value=6.7e+02 Score=28.65 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=10.4
Q ss_pred chHHHHHHHHhhcCCC
Q 013958 205 TSKELLKIINRMWGQE 220 (433)
Q Consensus 205 TS~ELlkvlnriw~le 220 (433)
++.+..+++.+|-+++
T Consensus 147 ~~~~r~~~ld~~~~~~ 162 (895)
T PRK01156 147 DPAQRKKILDEILEIN 162 (895)
T ss_pred CHHHHHHHHHHHhChH
Confidence 5567777777776554
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.80 E-value=6.4e+02 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK 269 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk 269 (433)
-+..|+.+|+..+.+|.++..+......++..+...+.+.+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~ 369 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKE 369 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655555555444444443
No 191
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.53 E-value=7.2e+02 Score=28.97 Aligned_cols=120 Identities=25% Similarity=0.321 Sum_probs=59.8
Q ss_pred hHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhh---------------hcccHHHH
Q 013958 291 LEVERKLRRRFESLNKKLGKELAETKHSLLKAVKD-LDTEKRARVVIEQVCDELARD---------------INDDKSEV 354 (433)
Q Consensus 291 Le~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alke-lE~ERkaRellE~vCdELAk~---------------I~e~kaEv 354 (433)
|.+|=-.|.-+|+----|-.|+++.|.-+...-|| .|.|.|-| +-|++-+|+-+- ...-+.|+
T Consensus 162 LQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R-~se~l~qevn~~kv~e~~~erlqye~klkstk~e~ 240 (861)
T KOG1899|consen 162 LQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR-LSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEM 240 (861)
T ss_pred HHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 44444566777877777888999988766653332 23333332 233333333211 11223333
Q ss_pred HHHHHH-hHHHHHHHHHhHHHHHH---------hHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 013958 355 EELKRE-SAIALEEVEKEREMIQV---------ADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414 (433)
Q Consensus 355 e~lKre-s~k~~eE~eeER~MLqm---------AEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~F 414 (433)
--|+.. ++|. -|++|..-++ .-+.|++++.|-|..+=.+-|+|-..++.|+.-+-.|
T Consensus 241 a~L~Eq~~eK~---~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 241 APLREQRSEKN---DEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred hhHHHHHhhhh---hHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 333322 1111 1222221111 1256777777777776666666666666555555444
No 192
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.94 E-value=3.3e+02 Score=26.06 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCCCCCC-cchh-HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHH
Q 013958 208 ELLKIINRMWGQEDRPS-SSMS-LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 277 (433)
Q Consensus 208 ELlkvlnriw~leeq~~-s~~S-lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~ 277 (433)
+|-.+|.++- +|++- ..++ +-.-|+..|++|+.....|..+-+.-..+.+.+...+...-..|+..++
T Consensus 61 dLe~~l~rLe--EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 61 DLEEALIRLE--EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred cHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444777774 55543 3323 3455789999999999999999999999999999999888888886443
No 193
>PRK14155 heat shock protein GrpE; Provisional
Probab=36.83 E-value=2e+02 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA 270 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~ 270 (433)
..|..+|+..+..+.+|...-....-+++.+.|+...|+.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e 55 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMN 55 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766666666667777777666653
No 194
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.45 E-value=3.7e+02 Score=25.29 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=41.9
Q ss_pred chhch--HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHH
Q 013958 202 ALTTS--KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKER 277 (433)
Q Consensus 202 ~L~TS--~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~ 277 (433)
.|.++ +|+=+++.+- |. |--..=|++|=..-..|+-+.++-.+...|-..-+.+.+.|..+...+|...+..|.
T Consensus 3 ~lA~~Ig~EfE~lId~~-G~-e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 3 DLASSIGKEFERLIDRY-GE-EAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred HHHHHHHHHHHHHHHHh-Ch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 6666666655 22 112244555544455577766666655555555566667777777666666555443
No 195
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=35.64 E-value=4.1e+02 Score=25.63 Aligned_cols=108 Identities=24% Similarity=0.405 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
.-+.+.+.=|+.|.++...+.-.. ..++ ||.++... +|+.- -+-+.+.+..+..+|. +.|+.++.+|+.
T Consensus 97 ~d~~~w~~al~na~a~lehq~~R~----~NLe-Ll~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~ 165 (221)
T PF05700_consen 97 NDVEAWKEALDNAYAQLEHQRLRL----ENLE-LLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRE 165 (221)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 346677777777777654433221 2243 67777665 57632 2334444555555553 456677777764
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHhhhccc
Q 013958 308 LGKELAETKHSLLKAVKDLDTEK----RARVVIEQVCDELARDINDD 350 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ER----kaRellE~vCdELAk~I~e~ 350 (433)
=-..=.++. .-|+.||..- ...--||-.|-+|-.+|.+.
T Consensus 166 RK~~Q~~~~----~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 166 RKRRQEEAG----EELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222 2223333332 22334666666665443333
No 196
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.39 E-value=6.1e+02 Score=27.52 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHH
Q 013958 353 EVEELKRESAIALEEVE 369 (433)
Q Consensus 353 Eve~lKres~k~~eE~e 369 (433)
|++.|+.|..-+++|+.
T Consensus 275 el~~l~~E~~~~~ee~~ 291 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQ 291 (511)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 46777777777766654
No 197
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.36 E-value=3.8e+02 Score=25.09 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEK--RARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ER--kaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
+.+.|+.=.+.+..++.+-...-..|.+++....+.+.+...+- ...+++++.=.|..+.+.+-+++++..|.+
T Consensus 67 I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~ 142 (181)
T PRK13454 67 ITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAG 142 (181)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555444442222 122344444444444444445555544444
No 198
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.74 E-value=8.8e+02 Score=29.12 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 013958 324 KDLDTEKRARVVIEQVCDELARDI 347 (433)
Q Consensus 324 kelE~ERkaRellE~vCdELAk~I 347 (433)
..+|+||+-+++--.+.+.=+..|
T Consensus 1001 ~~~Eqer~D~~la~RlA~sd~~~v 1024 (1259)
T KOG0163|consen 1001 NQLEQERRDHELALRLANSDGGQV 1024 (1259)
T ss_pred hHHHHHHHHHHHHHHHhhccCCcc
Confidence 346777777665544444433333
No 199
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.69 E-value=7.2e+02 Score=28.15 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=98.3
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhh
Q 013958 195 RLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN 274 (433)
Q Consensus 195 rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~ 274 (433)
.|++.+|-|.+ ..+=+-+.++ .++-..+-++|.- .|||.|..-+..+ + .+|+.|-..|.-|-.|.+.
T Consensus 240 ~m~~~gY~l~~-~~id~~~~~L---~~~l~~~~~~l~~--Leld~aeeel~~I-~------e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 240 DMKEEGYHLEH-VNIDSRLERL---KEQLVENSELLTQ--LELDEAEEELGLI-Q------EKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHccCCccc-ccHHHHHHHH---HHHHHHHHhHHHH--hhhhhHHHHHHHH-H------HHHHHHHHHHHHHHHHHHH
Confidence 36778888877 3333333333 3444444455544 4677777766543 2 3477777777777766655
Q ss_pred hH---------HHHHHHHHHHHHHHhHHHHHHhhhHHH---HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013958 275 KE---------REVVEAAIESIAGELEVERKLRRRFES---LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDE 342 (433)
Q Consensus 275 KE---------~eki~aai~slk~ELe~ERk~Rrr~E~---ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdE 342 (433)
=+ -++++..-.-+++|.+.=+..=+=+|. .-+++.++|.+.++.+...+..++....+=-.+.+--.+
T Consensus 307 V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~ 386 (570)
T COG4477 307 VEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEE 386 (570)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 33 356666666677777665554444432 357899999999999999999999988888887777777
Q ss_pred HHhhhcccHHHHHHHH
Q 013958 343 LARDINDDKSEVEELK 358 (433)
Q Consensus 343 LAk~I~e~kaEve~lK 358 (433)
+-+++.+-+.+-+.+.
T Consensus 387 ~~~~l~~i~~~q~~~~ 402 (570)
T COG4477 387 IEKALTDIEDEQEKVQ 402 (570)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 7777665554444333
No 200
>PRK14162 heat shock protein GrpE; Provisional
Probab=34.52 E-value=4.4e+02 Score=25.61 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 282 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~a 282 (433)
.-+..|..+|...+..+.+|...-....-+.+.+.|+...|+...+.--.+++-.
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~ 93 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAK 93 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888877777777777777777777765444433333333
No 201
>PRK14153 heat shock protein GrpE; Provisional
Probab=34.46 E-value=4.4e+02 Score=25.62 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHh
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAW 272 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~w 272 (433)
+.++..|++..+.++.+|...-....-+++.+.|....|+...
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777776666666666777777666665433
No 202
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=34.40 E-value=3.5e+02 Score=24.40 Aligned_cols=24 Identities=46% Similarity=0.483 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQE 250 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E 250 (433)
-..|-||--||+.++.+|.+|.++
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999877
No 203
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=34.39 E-value=1e+02 Score=26.28 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
|.-+..||++.++.|+.|++|--..+=.|-||---||-||.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667899999999999999999887777788887777777654
No 204
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.17 E-value=5.6e+02 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH
Q 013958 321 KAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI 363 (433)
Q Consensus 321 ~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k 363 (433)
-....|+.||-..+.||+.-+++... ...|+..||++..-
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 34556777888888899988888654 66777788877543
No 205
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.12 E-value=1.6e+02 Score=27.32 Aligned_cols=19 Identities=32% Similarity=0.393 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHhHHHHHHH
Q 013958 350 DKSEVEELKRESAIALEEV 368 (433)
Q Consensus 350 ~kaEve~lKres~k~~eE~ 368 (433)
-+.+++.||.+++....|.
T Consensus 173 ~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 6777788888877665553
No 206
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.70 E-value=5.8e+02 Score=26.77 Aligned_cols=142 Identities=22% Similarity=0.305 Sum_probs=71.3
Q ss_pred ccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHH
Q 013958 200 SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREV 279 (433)
Q Consensus 200 ~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~ek 279 (433)
+.+..|+.+|.+-|+.+- .+ -.-|+.||+.-+.+++.|..+-+.-+..--.+-.+..-| .|.
T Consensus 16 ~~S~~t~~~l~~~~~sL~---qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE--------EE~ 77 (310)
T PF09755_consen 16 SSSSATREQLRKRIESLQ---QE-------NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE--------EEF 77 (310)
T ss_pred CCCCCchHHHHHHHHHHH---HH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 334445567776666653 12 356788888888888888887776555433332222211 111
Q ss_pred HHHH----HHHHHHH---h--HHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhhcc
Q 013958 280 VEAA----IESIAGE---L--EVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDELARDIND 349 (433)
Q Consensus 280 i~aa----i~slk~E---L--e~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka-RellE~vCdELAk~I~e 349 (433)
|... |+.++.| | ..|+.--.=...|.+||.+ |-..|..+-+ -||.|.-. =.-|-.-|+.|.++...
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~q-Lr~EK~~lE~---~Le~EqE~~V~kL~k~i~~Le~e~~~ 153 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQ-LRQEKVELEN---QLEQEQEYLVNKLQKKIERLEKEKSA 153 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111111 1 2222222223444444432 3333333333 23434332 12345667888888888
Q ss_pred cHHHHHHHHHHhHH
Q 013958 350 DKSEVEELKRESAI 363 (433)
Q Consensus 350 ~kaEve~lKres~k 363 (433)
+..+++.|+++-+.
T Consensus 154 ~q~~le~Lr~EKVd 167 (310)
T PF09755_consen 154 KQEELERLRREKVD 167 (310)
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888886443
No 207
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=33.46 E-value=3.2e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhhccc
Q 013958 336 IEQVCDELARDINDD 350 (433)
Q Consensus 336 lE~vCdELAk~I~e~ 350 (433)
|+++-+.|...+.++
T Consensus 135 l~~~~~~l~~~~~~~ 149 (202)
T PF01442_consen 135 LEELSEELTERAEEL 149 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhHHHH
Confidence 333333333333333
No 208
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.36 E-value=6.7e+02 Score=27.36 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH---------HhHHHH-HH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAG---------ELEVER-KL 297 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~---------ELe~ER-k~ 297 (433)
.-|+.|+.|+.....+|.+...+....+++|+++-+.+.--.... ...++++...|..+.- -+-.|. ..
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~ 144 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQR 144 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhH
Confidence 446666777777777777777766666666666655443222111 2233344433333332 111111 22
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013958 298 RRRFESLNKKLGKELAETKHSLLKAVKDLDTEKR 331 (433)
Q Consensus 298 Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERk 331 (433)
=.|+-.+...|..++.+..-++.+.+++|-..+.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456666777777777777666666666654443
No 209
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.36 E-value=16 Score=40.67 Aligned_cols=179 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred chhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHH
Q 013958 202 ALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVE 281 (433)
Q Consensus 202 ~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~ 281 (433)
...|=..|..++-.+=..........-....+...+..+-.++..+..++.........|-++++.-. .|.+.+.
T Consensus 139 d~~~Q~~im~~Iqev~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~-----~e~~~L~ 213 (713)
T PF05622_consen 139 DESTQHAIMEAIQEVTSNQQNVSLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQ-----EEKESLQ 213 (713)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHhh
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH---
Q 013958 282 AAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK--- 358 (433)
Q Consensus 282 aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lK--- 358 (433)
.-++.+...+. .+-.....-+.-++.++++++.-+...-.++++---++.-++.-|.++-++|.+.+.++++|.
T Consensus 214 ~e~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 214 SENEELQERLS---QLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhhcccC---CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 013958 359 RESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414 (433)
Q Consensus 359 res~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~F 414 (433)
++....++|++. |-++..-+++|..+||.|
T Consensus 291 ~~a~~LrDElD~--------------------------lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 291 REARALRDELDE--------------------------LREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHhhhHHH--------------------------HHHHHHHHHHHHHHHHHH
No 210
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=33.36 E-value=1.5e+02 Score=32.82 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 311 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 311 (433)
++-|+.-|+||.||..=-. -|-++- .| -|.-|+.+||.|+++|-++|.--.||.+.
T Consensus 568 k~s~delr~qi~el~~ive-------~lk~~~--------~k-------el~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVE-------ALKKDH--------GK-------ELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHH--------HH-------HHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 4557888999999865322 221111 11 23347778888888887777655555443
No 211
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=33.35 E-value=8.5e+02 Score=28.53 Aligned_cols=68 Identities=26% Similarity=0.268 Sum_probs=36.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013958 265 FAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRAR 333 (433)
Q Consensus 265 laEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaR 333 (433)
+.+||..-+..+.+.-++ |-.=+++-..|+|+++..+.--++.-+|=..-|--..++-|+.|+++++.
T Consensus 270 ~leeKrlk~~~~~eek~~-~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 270 VLEEKRLKEKEQKEEKKA-IKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 445554433333333222 22233344556666666666666666666666666666667777766665
No 212
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.22 E-value=5.2e+02 Score=26.03 Aligned_cols=167 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred cccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHH
Q 013958 199 VSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE 278 (433)
Q Consensus 199 ~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~e 278 (433)
+.+.+++--.|-++.-.+=+++..-.+--=.+.++++|+..++..+-.+..+....++++..+-..+.+-+ ...++-++
T Consensus 2 m~~~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r-~r~~~~e~ 80 (239)
T COG1579 2 MNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR-ERIKRAEE 80 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 013958 279 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 279 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lK 358 (433)
++.++-.. +...-+..-=..+-..+......+...+.++++-.+....+..-=-.+-+.+.++++.+++=-
T Consensus 81 kl~~v~~~---------~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 81 KLSAVKDE---------RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHhccccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHhHHHH
Q 013958 359 RESAIALEEVEKEREMI 375 (433)
Q Consensus 359 res~k~~eE~eeER~ML 375 (433)
.+..+...++..+|.+|
T Consensus 152 ~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 152 AEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHH
No 213
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.18 E-value=3.1e+02 Score=23.42 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 312 (433)
+..+|+.-+..+..++..-.....+++.--.+|.++...... --....+-........+.|.+.+...+.-=.+|..+|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~-flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDK-FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444555444444443321111 0000111112233446778888888888888999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013958 313 AETKHSLLKAVKDLDTEKRARVVIEQVCDE 342 (433)
Q Consensus 313 aE~K~s~~~alkelE~ERkaRellE~vCdE 342 (433)
..+++-..+.-..++.=..=...|+.|.+.
T Consensus 91 ~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888888888888888888887653
No 214
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.11 E-value=3.8e+02 Score=24.43 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKA 270 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~ 270 (433)
+..-+..|..|+..-+.++.+|..+....+.++..|.+.++.+-+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344578888888888888888888888888888888888877653
No 215
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=33.08 E-value=4.5e+02 Score=28.38 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=78.4
Q ss_pred HHHHHHHHhhcCCCCCCC-cchhHHHHHHHHHHHH--------HHHHHHHHHHhhhchHHHHHHHH----HhHHHHHHhh
Q 013958 207 KELLKIINRMWGQEDRPS-SSMSLVSALHAELERA--------RLQVNQLIQEQRSDQSEISYLMK----CFAEEKAAWK 273 (433)
Q Consensus 207 ~ELlkvlnriw~leeq~~-s~~Slv~aL~~EL~~A--------r~~I~eL~~E~~s~~~eie~l~K----qlaEEk~~wK 273 (433)
....++|.=+.+|.+.++ .+-|=+..+-.+|.+. ..+|.+|++++.....||+.+-. -+.++.
T Consensus 100 ~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~---- 175 (478)
T PF11855_consen 100 PAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQ---- 175 (478)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH----
Confidence 355677777777766644 7777788888888764 46888999998888888888743 333333
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHH
Q 013958 274 NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETK 316 (433)
Q Consensus 274 ~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K 316 (433)
-.|++..+++-+.+=+.|=|+.+-..+.+|+.|-..+.+-.
T Consensus 176 --~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~~~ 216 (478)
T PF11855_consen 176 --ARERARQILQLARELPADFRRVEDNFRELDRALRERIIDWD 216 (478)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 37888888888888888999999999999999987776633
No 216
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=32.95 E-value=4.9e+02 Score=29.20 Aligned_cols=47 Identities=32% Similarity=0.386 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQ 338 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~ 338 (433)
..|+-|+-+||.+| |+|.+-|+.|..--+ ..-|.+.+|||.+..+.+
T Consensus 531 ~ELkmd~lrerelr---eslekql~~ErklR~----~~qkr~kkEkk~k~k~qe 577 (641)
T KOG3915|consen 531 TELKMDFLRERELR---ESLEKQLAMERKLRA----IVQKRLKKEKKAKRKLQE 577 (641)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35777888888888 566677877755432 233456667777765443
No 217
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.53 E-value=3.1e+02 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhH
Q 013958 303 SLNKKLGKELAETKHSLLKAVKD 325 (433)
Q Consensus 303 ~ln~KL~~ELaE~K~s~~~alke 325 (433)
....+++++|-.+--.|..|+.-
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~~ 88 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALAH 88 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhc
Confidence 34566777777766666666543
No 218
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.46 E-value=6.2e+02 Score=26.69 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=5.1
Q ss_pred hHHhhhhh
Q 013958 109 LAATLWEM 116 (433)
Q Consensus 109 LaA~LWei 116 (433)
+++.+|=.
T Consensus 32 ~~~~~WA~ 39 (457)
T TIGR01000 32 VFLVLFSL 39 (457)
T ss_pred HHHHHHHH
Confidence 45667866
No 219
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=32.25 E-value=4.5e+02 Score=25.00 Aligned_cols=68 Identities=25% Similarity=0.298 Sum_probs=42.7
Q ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013958 260 YLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQV 339 (433)
Q Consensus 260 ~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~v 339 (433)
.++++--+||.--|..|.++ -..+|-+.|+++.+.-+.+-..+..|....+ -|+.+.-+|...|.+.+
T Consensus 61 ~ai~~QieEk~r~k~~E~er------r~~EE~~EE~Rl~rere~~q~~~E~E~~~~~------~KEe~~~~k~~~l~e~~ 128 (157)
T PF15236_consen 61 RAIKQQIEEKRRQKQEEEER------RRREEEEEEERLAREREELQRQFEEEQRKQR------EKEEEQTRKTQELYEAM 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34455556665555555554 3567777788888888888888877765433 35555566666665543
No 220
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.56 E-value=2.4e+02 Score=32.33 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=11.5
Q ss_pred HHhhhcccHHHHHHHHHHhHHHH
Q 013958 343 LARDINDDKSEVEELKRESAIAL 365 (433)
Q Consensus 343 LAk~I~e~kaEve~lKres~k~~ 365 (433)
|--+|.++...+|++|+...+.+
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q 127 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQ 127 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhH
Confidence 34445555555555555544433
No 221
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.41 E-value=5.3e+02 Score=29.52 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhH
Q 013958 323 VKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVAD 379 (433)
Q Consensus 323 lkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAE 379 (433)
+|+|-.-+..|+.+++...-||+.|.+.+..-+.|.+...+++--.--+...|-+||
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AE 657 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHH
Confidence 344444455567888888888888888777777777766665433333333333343
No 222
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.27 E-value=9.1e+02 Score=28.26 Aligned_cols=128 Identities=22% Similarity=0.233 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE--KAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 303 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE--k~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 303 (433)
..+....|..+|+...+...+|+-+-.....+++.+.-+|.|= ++.-=..+-+.....-.-+-.+|+..+-..+-++.
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~ 666 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777777777777777777777777777777432 11111111111111111122222222222222222
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 304 LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 304 ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
-..-+-.|+.++..-+...-.||++||.. |.|+...-.+.+.+++..+.+
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhcc
Confidence 22223345555555555555566666544 555444444555555554443
No 223
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=30.88 E-value=1.5e+02 Score=33.85 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 013958 241 RLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKL 297 (433)
Q Consensus 241 r~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~ 297 (433)
|+++..|.+|++. |+..+..+..+-|.. ...|-++.+.+||. ||||||-
T Consensus 3 RdkL~~Lq~ek~~---E~~~l~~~~~~lk~~-~~~el~~Lk~~vqk----LEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQK---ERQALKSSVEELKES-HEEELNKLKSEVQK----LEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH-hHHHHHHHHHHHHH----HHHHHHH
Confidence 6678888888754 455555554444432 23456677777777 7888873
No 224
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.64 E-value=1e+03 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYL 261 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l 261 (433)
-+.+|.+||+++|-..++-..|++.-+++...+
T Consensus 366 ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 366 QLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999887777776666666665544
No 225
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.61 E-value=5.2e+02 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 013958 301 FESLNKKLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 301 ~E~ln~KL~~ELaE~K~s~~~alkelE~ 328 (433)
++.-|.+|..||..++.-...+-.+++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766655444334333
No 226
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.57 E-value=8.7e+02 Score=27.82 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
-++-+..|..+|.+.+..+.++..+..+...+.+.|-+++.
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 34567788888888888888888888776666666666555
No 227
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.78 E-value=5.8e+02 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013958 324 KDLDTEKRARVVIEQVCDELA 344 (433)
Q Consensus 324 kelE~ERkaRellE~vCdELA 344 (433)
++++.++...+.++.-+..+-
T Consensus 204 k~~~~~~~k~e~~e~e~~~l~ 224 (297)
T PF02841_consen 204 KEIEEEQAKAEAAEKEKEKLE 224 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555444443
No 228
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=29.68 E-value=1e+03 Score=28.26 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhH
Q 013958 320 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSE 392 (433)
Q Consensus 320 ~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~e 392 (433)
....++++.-++.=+-|+..=|.|...|.+..+|+..|++.+. +++-+|--.-.--.+++|+|-+..
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~------~~~~~mrd~~~~~~e~~~~~~~~~ 285 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL------EKEQELRDHLRTYAERRRETETTN 285 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hhhhhhcchhhhhHHHHHhhcchh
Confidence 3344455555555555666667788888888888888884222 223333333334445555554443
No 229
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.59 E-value=4.4e+02 Score=24.09 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhHHH
Q 013958 351 KSEVEELKRESAIA 364 (433)
Q Consensus 351 kaEve~lKres~k~ 364 (433)
+.++..+..+....
T Consensus 164 ~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 164 RSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 230
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.40 E-value=1.2e+03 Score=29.22 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=40.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 013958 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 365 (433)
Q Consensus 299 rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~ 365 (433)
...+.-..++..+|.|++.-+.+.-+++++.++-..+.++.+ .+...+..+...+++|........
T Consensus 303 e~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~e 368 (1486)
T PRK04863 303 AAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQN 368 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566777777777777777777777777777633 345555555555555554444333
No 231
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=29.37 E-value=1.5e+02 Score=29.86 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh-hhHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK-NKEREVVE 281 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK-~KE~eki~ 281 (433)
+.-.+.|+++....|+.|..|......-.+..+++|.+++..|- +...+++.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 45677789999999999999999999999999999999999998 44555555
No 232
>PRK14144 heat shock protein GrpE; Provisional
Probab=29.11 E-value=3.9e+02 Score=26.19 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
+..|..+++.....+.+|...-....-+.+.+.|....|+..
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~ 88 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVAN 88 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666676666666666555555555666666666655533
No 233
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=29.04 E-value=2.3e+02 Score=22.78 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERK 296 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk 296 (433)
.-+..++.++..++..+..++.-..-+...|+.+++.+.+-...- .......+-.+.+.|.-|-+
T Consensus 59 ~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l----~~~~~~~~~~~~~~LtpeQR 123 (125)
T PF13801_consen 59 QEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAEL----RQERLEHLLEIRAVLTPEQR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHHh
Confidence 357888889999999999998888888888888887777654332 33333444455555555443
No 234
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.92 E-value=3.3e+02 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.324 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q 013958 225 SSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESI 287 (433)
Q Consensus 225 s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~sl 287 (433)
..+--|..|++|++.-+.....|..+... +..-..++.+|+.+|.. +|++.+.-|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~----L~~en~~L~~e~~~~~~----rl~~LL~kl 69 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEE----LKEENEQLKQERNAWQE----RLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 44556788888888888887777755544 44455566688888754 555555444
No 235
>PRK00106 hypothetical protein; Provisional
Probab=28.85 E-value=8.6e+02 Score=27.19 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH-HHHHHhHHHHHHhhhHHHHhHHHHHHHHHH
Q 013958 237 LERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE-SIAGELEVERKLRRRFESLNKKLGKELAET 315 (433)
Q Consensus 237 L~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~-slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~ 315 (433)
+..|+...+++.++-...-++...-.+.=+++...-+..+.++--..=. .+... |+++.++.+.|++|. .+|..-
T Consensus 48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qr---E~rL~qREE~LekRe-e~Lekr 123 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQI---ESRLTERATSLDRKD-ENLSSK 123 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHH--HHHHHHHh
Q 013958 316 KHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAI--ALEEVEKE 371 (433)
Q Consensus 316 K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k--~~eE~eeE 371 (433)
+..+.+-.++|+...+.=+-.+.-|+++-......=.++-.|-.+-.+ +.+.+++|
T Consensus 124 E~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~ 181 (535)
T PRK00106 124 EKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENK 181 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
No 236
>PRK11281 hypothetical protein; Provisional
Probab=28.78 E-value=6.9e+02 Score=30.40 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV 293 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ 293 (433)
-+..-.|.+|+..-.+++.-+.+|-.++-.-.+-+-.|. .+.+++.+....-|+.+++.+..
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~-----d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQR-----DYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888777777776655333322222 22333344444444444444433
No 237
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.54 E-value=8e+02 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhcccHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve 355 (433)
+|++-.||-.+..-.++|++
T Consensus 243 vek~i~EfdiEre~LRAel~ 262 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELE 262 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 238
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.24 E-value=1e+03 Score=28.01 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013958 264 CFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL 343 (433)
Q Consensus 264 qlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL 343 (433)
++-||..+.-.++..++-....+++.+.-.+..+--..+. ..|.-+|++-|..+.+--.+.|+-.+.+-++|.=-+=+
T Consensus 497 ~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~ 574 (809)
T KOG0247|consen 497 QLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEIL 574 (809)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 3334444444444445555566666665555554444444 67778888888877776666666555555554422222
Q ss_pred HhhhcccHHHHHHHHHHhH
Q 013958 344 ARDINDDKSEVEELKRESA 362 (433)
Q Consensus 344 Ak~I~e~kaEve~lKres~ 362 (433)
-.. +++.+++.+..+.+
T Consensus 575 E~~--~~~~~i~~l~~el~ 591 (809)
T KOG0247|consen 575 EST--EYEEEIEALDQELE 591 (809)
T ss_pred hcc--hhhhhhHHHHHHHH
Confidence 222 66677777776644
No 239
>PRK14141 heat shock protein GrpE; Provisional
Probab=28.21 E-value=3.4e+02 Score=26.72 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhh
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWK 273 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK 273 (433)
|..+|+..+..+.+|...-....-+++.|.|....|+...+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~ 76 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADAR 76 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666655545555566777776666654433
No 240
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.16 E-value=6.1e+02 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=22.7
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Q 013958 297 LRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA-RVVIEQVCDEL 343 (433)
Q Consensus 297 ~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka-RellE~vCdEL 343 (433)
.++.+|.++.|+.+ ++.....+|+.|+..+.. -+-|..+||.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777666655 344456666666544331 12344555544
No 241
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.87 E-value=5.9e+02 Score=25.01 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhc
Q 013958 408 RSQLEAFSRNQK 419 (433)
Q Consensus 408 ~~elE~FL~sk~ 419 (433)
..||..|...++
T Consensus 237 ~~Di~~fv~~~~ 248 (261)
T cd07674 237 ENLIRKFAESKG 248 (261)
T ss_pred HHHHHHHHHhCC
Confidence 467888988875
No 242
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.41 E-value=5.6e+02 Score=24.60 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 013958 205 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 284 (433)
Q Consensus 205 TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai 284 (433)
+..++=.-||.|= ..|+.+|+.|+.|+..-+.........-.....+..+|..-| .++..-+
T Consensus 10 af~~iK~YYndIT------~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL------------~~a~~e~ 71 (201)
T PF13851_consen 10 AFQEIKNYYNDIT------LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL------------KKAEEEV 71 (201)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHH
Confidence 4456666677662 478899999999998877765554444333332222222111 1111222
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~ 364 (433)
..++.+|.. ..|.-..|..+|.-+...-++|..-+-.-++++.=|..+-.+-.+.....+..=.+...-
T Consensus 72 ~eL~k~L~~-----------y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 72 EELRKQLKN-----------YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332 334444556666666666667777777788888888777666554443333322221111
Q ss_pred HH--HHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958 365 LE--EVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 365 ~e--E~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~ 419 (433)
-+ -+=-|++|--|.+..= .-...|.+.-.+.-=.-+.++.+...|+.-|.+|.
T Consensus 141 ~~~kn~lLEkKl~~l~~~lE--~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSEQLE--KKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 1223555555555432 22222222222221223456666777777777765
No 243
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.38 E-value=1.2e+03 Score=28.35 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=37.4
Q ss_pred hhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 013958 203 LTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEA 282 (433)
Q Consensus 203 L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~a 282 (433)
-+|..+++.-|.|+| .+-.. +-.++..=|--.+....+. +-.-++.-+++++++.-..-...--|.+..
T Consensus 712 ~~~~~~vl~~Lara~-y~~~~-----~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAW-YEAGK-----LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred ccCCHHHHHHHHHHH-HHhhh-----HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 356789999999999 33221 2222222221111111111 133456666777777655544444555555
Q ss_pred HHHHHH
Q 013958 283 AIESIA 288 (433)
Q Consensus 283 ai~slk 288 (433)
++..++
T Consensus 781 a~~~le 786 (1018)
T KOG2002|consen 781 AVKELE 786 (1018)
T ss_pred HHHHHH
Confidence 555433
No 244
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.33 E-value=4.7e+02 Score=23.63 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFES 303 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 303 (433)
.=+.+|..+|+-.-..+.+|.+++. ++...+..|-.+..+.-.+ -.-+.+-|.++...|++|+-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd----~L~~~l~~L~~q~~s~~qr-~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKD----QLRNALQSLQAQNASRNQR-IAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999977664 4777777777776554333 344677777777777776655544443
No 245
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.27 E-value=5.8e+02 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=11.8
Q ss_pred ccchhchHHHHHHHHhhcCCCCCCC
Q 013958 200 SNALTTSKELLKIINRMWGQEDRPS 224 (433)
Q Consensus 200 ~~~L~TS~ELlkvlnriw~leeq~~ 224 (433)
..++.+-+||..+|..-=.+|+..+
T Consensus 15 k~g~~~~~el~~f~keRa~IEe~Ya 39 (261)
T cd07648 15 KHGQIAVKELADFLRERATIEETYS 39 (261)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555543333444443
No 246
>PRK12704 phosphodiesterase; Provisional
Probab=26.99 E-value=8.8e+02 Score=26.72 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013958 238 ERARLQVNQLI 248 (433)
Q Consensus 238 ~~Ar~~I~eL~ 248 (433)
..|+...+++.
T Consensus 34 ~~Ae~eAe~I~ 44 (520)
T PRK12704 34 KEAEEEAKRIL 44 (520)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 247
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.98 E-value=2e+02 Score=22.35 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYL 261 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l 261 (433)
++-+..++.|+...+.+|.+|.++....+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777777777777777666666665
No 248
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=26.74 E-value=6.2e+02 Score=26.61 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHHHH-HHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958 320 LKAVKDLDTEKRARVVIE-QVCDELARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 320 ~~alkelE~ERkaRellE-~vCdELAk~I~e~kaEve~lKres~k~~e 366 (433)
.++++.||+=-.+++-+| ++-..|+.=+++-|+.++.|++....+.+
T Consensus 161 ~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 161 NKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 344445555444444444 56677888888889999988887766654
No 249
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=26.46 E-value=9.9e+02 Score=27.13 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=72.8
Q ss_pred cchhHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh--HHHHHHhhhhH---HHHHHHHHHHHHHHhHHHHHHh
Q 013958 225 SSMSLV-SALHAELERARLQVNQLIQEQRSDQSEISYLMKCF--AEEKAAWKNKE---REVVEAAIESIAGELEVERKLR 298 (433)
Q Consensus 225 s~~Slv-~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEk~~wK~KE---~eki~aai~slk~ELe~ERk~R 298 (433)
+..|-+ ..|+.|+.+-+..+..|...-+..-.+.+.|..-. -++++.---+. ..--..-...|-+.+..+|-.=
T Consensus 76 a~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 76 AGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 333444 47888888888888888766555444444443221 12222110000 0000112334445555666666
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 013958 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 299 rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lK 358 (433)
-|+-+-|+.|..-|.|...+|.+.-.+-=.-.-+-..-..|-.||++.+++++.++..|+
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999998886655211122233333344455555555555555544
No 250
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.41 E-value=5.7e+02 Score=24.34 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHHhHHHH
Q 013958 348 NDDKSEVEELKRESAIAL 365 (433)
Q Consensus 348 ~e~kaEve~lKres~k~~ 365 (433)
..|-+.++.|+++...+.
T Consensus 131 ~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 131 ENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 345566666666655444
No 251
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=26.34 E-value=6.7e+02 Score=29.38 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=6.4
Q ss_pred HHHHHHHHHhHHH
Q 013958 282 AAIESIAGELEVE 294 (433)
Q Consensus 282 aai~slk~ELe~E 294 (433)
..|+-|+.|.+.|
T Consensus 462 e~IeKLk~E~d~e 474 (762)
T PLN03229 462 EMIEKLKKEIDLE 474 (762)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555544
No 252
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.29 E-value=1.5e+02 Score=22.42 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lKres~k~~eE~ee 370 (433)
||.-||-|-......+++-+.|+++-.+++.|+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777776666666544
No 253
>PRK04654 sec-independent translocase; Provisional
Probab=26.13 E-value=3.3e+02 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958 283 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 329 (433)
Q Consensus 283 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~E 329 (433)
.+.++++|+++|=++.. +...-.++..++.+++..+++.+++++..
T Consensus 42 ~~~~vk~El~~El~~~E-Lrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 42 QWDSVKQELERELEAEE-LKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555443321 11111233345666666666666666643
No 254
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.04 E-value=1.1e+03 Score=27.41 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHhHhhh-HHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 013958 376 QVADVLR-EERAQIKLSEAKYQLEEKNAAVDKLRSQLEAF 414 (433)
Q Consensus 376 qmAEvWR-EERVQMKL~eAk~~leeK~s~ldkL~~elE~F 414 (433)
.+++.+. -+.+++.+.+....+++-...++++...+..+
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 397 ELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 35566677777666666666666665555444
No 255
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.83 E-value=6.6e+02 Score=24.85 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 308 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 308 (433)
.|.-++.+|..|+..+-+++..++....+++.+.....+= +.+...+++-=. |.|=+.+
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~--------e~~A~~Al~~g~-------------E~LAr~a 90 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL--------EEKAELALQAGN-------------EDLAREA 90 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHCCC-------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 013958 309 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 309 ~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lK 358 (433)
.-+......-+...-..|..-+...+-|+.--.+|-..|.++++....++
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 256
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.83 E-value=1.6e+02 Score=35.57 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHHHhhhcccHHHHHHHHHHhHHH-HHH--------HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHH
Q 013958 339 VCDELARDINDDKSEVEELKRESAIA-LEE--------VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRS 409 (433)
Q Consensus 339 vCdELAk~I~e~kaEve~lKres~k~-~eE--------~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~ 409 (433)
=||+=|+-|+|.+.|||.|+.....+ ... .|-|+.|-+|.-.| |||.-.++.+..
T Consensus 358 NedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~tw----------------EEkl~ktE~in~ 421 (1714)
T KOG0241|consen 358 NEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTW----------------EEKLRKTEEINQ 421 (1714)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHH----------------HHHHHHHHHHHH
Confidence 48888888888888888887654431 111 12355555555555 666666666666
Q ss_pred HHHHHHhh
Q 013958 410 QLEAFSRN 417 (433)
Q Consensus 410 elE~FL~s 417 (433)
|.++-|..
T Consensus 422 erq~~L~~ 429 (1714)
T KOG0241|consen 422 ERQAQLES 429 (1714)
T ss_pred HHHHHHHH
Confidence 66666654
No 257
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.58 E-value=7.3e+02 Score=25.32 Aligned_cols=101 Identities=30% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHH--HHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 013958 244 VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEV--ERKLRRRFESLNKKLGKELAETKHSLLK 321 (433)
Q Consensus 244 I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~--ERk~Rrr~E~ln~KL~~ELaE~K~s~~~ 321 (433)
+++|.+-+.+.+.|++.|-.-+..+...--++-+.+-+..+.++....-+ ...+++++ .-|..+.+|
T Consensus 126 ~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~ke---------- 194 (258)
T PF15397_consen 126 VRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKE---------- 194 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHH----------
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958 322 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 322 alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~e 366 (433)
=..--+.-++|-.+|...++||+.|.......|+
T Consensus 195 -----------i~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 195 -----------IVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
No 258
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.53 E-value=7.6e+02 Score=25.49 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
+.++..|+..|+......+.=...--.....++.++-.+.+.... |+.|+.. +++..+-++.
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~---------------L~~e~~~---L~~~~~e~~~ 200 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDA---------------LEEELRQ---LKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH---HHHhHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~ee 370 (433)
-=..||..+|..+.....+++.-++.-.-+++--.++-..|.+.+++..++..+...+..-+++
T Consensus 201 ~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 259
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.44 E-value=6.8e+02 Score=24.93 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 213 INRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 213 lnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
-|..||..+.. --.|+.-++.-+. +...+-..++|+.....+-..-|++|+
T Consensus 3 ~~~Fwg~~~~G--~~~L~~r~k~g~~-~~kel~~f~keRa~iEe~Yak~L~kLa 53 (269)
T cd07673 3 LENFWGEKNSG--FDVLYHNMKHGQI-STKELSDFIRERATIEEAYSRSMTKLA 53 (269)
T ss_pred hhcccCCCCcc--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677554222 1123333333222 233344445566555544444444444
No 260
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=25.36 E-value=8.9e+02 Score=31.80 Aligned_cols=119 Identities=27% Similarity=0.293 Sum_probs=70.8
Q ss_pred hhHHHHhHHHH---HHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 299 RRFESLNKKLG---KELAETKHSLLKAVKDLDTEKRA---------------RVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 299 rr~E~ln~KL~---~ELaE~K~s~~~alkelE~ERka---------------RellE~vCdELAk~I~e~kaEve~lKre 360 (433)
...|.+|+|++ ++.+.+|-++-.|.+-.-+=+|+ +..||+|||=|--+..+++.+-..||+.
T Consensus 2162 ~~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrD 2241 (3164)
T COG5245 2162 LLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRD 2241 (3164)
T ss_pred HhHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhh
Confidence 33444555443 56666666666666655555555 2349999987766666665555555532
Q ss_pred ------------------hHHHHHHHH-----------------------------HhHHHHHHhHhhhHHhhhhhhhHh
Q 013958 361 ------------------SAIALEEVE-----------------------------KEREMIQVADVLREERAQIKLSEA 393 (433)
Q Consensus 361 ------------------s~k~~eE~e-----------------------------eER~MLqmAEvWREERVQMKL~eA 393 (433)
..+-+|+-+ -=+++|..-+..|+|=-..++. |
T Consensus 2242 Dfi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~ 2320 (3164)
T COG5245 2242 DFIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-A 2320 (3164)
T ss_pred hHHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-H
Confidence 122222111 1246677778888885444444 2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhc
Q 013958 394 KYQLEEKNAAVDKLRSQLEAFSRNQK 419 (433)
Q Consensus 394 k~~leeK~s~ldkL~~elE~FL~sk~ 419 (433)
+..|+....-..|..+|++|+...+
T Consensus 2321 -~~~e~~L~~~~~~s~dl~~~~l~~r 2345 (3164)
T COG5245 2321 -FLVEDRLTLGKGLSSDLMTFKLRRR 2345 (3164)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2337777788889999999986543
No 261
>PLN02372 violaxanthin de-epoxidase
Probab=25.31 E-value=9.1e+02 Score=26.66 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhHH-HHHHhhhHHHHhHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013958 276 EREVVEAAIESIAGELEV-ERKLRRRFESLNKK--LGKELAETKHSLLKAVKDLDTEKRARVVIEQV 339 (433)
Q Consensus 276 E~eki~aai~slk~ELe~-ERk~Rrr~E~ln~K--L~~ELaE~K~s~~~alkelE~ERkaRellE~v 339 (433)
|...|+. +..+..||+. -+++++..+.+=.+ |+..|.+++.-..+++++|-+|- .++++++
T Consensus 374 e~~i~~e-~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee--~~~l~~~ 437 (455)
T PLN02372 374 EKTIVKE-ARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEE--KELLEKL 437 (455)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHH
Confidence 3444444 3445566665 46788888889899 99999999999999999776654 3444443
No 262
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=24.87 E-value=6.8e+02 Score=24.71 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 356 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~ 356 (433)
-+.+...++.++...+.-...|..+..+-..++.++.........+-+.+...-+ .+...|-.++....+.-.+|..
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v~~ 146 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEVSK 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555666655555544444444433322 2555555666555554444444
Q ss_pred HH
Q 013958 357 LK 358 (433)
Q Consensus 357 lK 358 (433)
+-
T Consensus 147 l~ 148 (256)
T PF14932_consen 147 LA 148 (256)
T ss_pred HH
Confidence 33
No 263
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.85 E-value=6.9e+02 Score=24.80 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHH
Q 013958 282 AAIESIAGELEVERK 296 (433)
Q Consensus 282 aai~slk~ELe~ERk 296 (433)
.-.....++|..||.
T Consensus 35 ~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 35 EEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444566777775
No 264
>PTZ00121 MAEBL; Provisional
Probab=24.49 E-value=1.6e+03 Score=28.97 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhhccc
Q 013958 333 RVVIEQVCDELARDINDD 350 (433)
Q Consensus 333 RellE~vCdELAk~I~e~ 350 (433)
|...+.-|.|.++.+.+-
T Consensus 1218 RraEEErR~EE~RraEEa 1235 (2084)
T PTZ00121 1218 RKAEDAKKAEAVKKAEEA 1235 (2084)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 265
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.40 E-value=1.4e+03 Score=28.17 Aligned_cols=180 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH----HhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHH-
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMK----CFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESL- 304 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~K----qlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~l- 304 (433)
|..|..+|+...+++.+|.+....-..+.+.|=. .=+.....-...+-+.....+.....+++.-++.-+..+.-
T Consensus 751 IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 751 LAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhcccHHHHHHHHHHhHHHHH
Q 013958 305 ---------------NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDEL---ARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 305 ---------------n~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdEL---Ak~I~e~kaEve~lKres~k~~e 366 (433)
+..+...|.+...++....-.++.=..+...+....+++ ...+.+.++++..+..+......
T Consensus 831 ~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~ 910 (1353)
T TIGR02680 831 ERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASL 910 (1353)
T ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 367 EVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 367 E~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
+++.=+..+... .+=|+.+|.+++..|++-...+..+..++-+
T Consensus 911 ~l~~l~e~l~~~----~eel~a~L~e~r~rL~~l~~el~~~~~~~~~ 953 (1353)
T TIGR02680 911 RLRTLEESVGAM----VDEIRARLAETRAALASGGRELPRLAEALAT 953 (1353)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 266
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.35 E-value=3.2e+02 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 013958 326 LDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA 362 (433)
Q Consensus 326 lE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~ 362 (433)
=++-|.++|-++.-|..|-+.-++.|..+.+|-+|..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444444433
No 267
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=24.24 E-value=1.5e+03 Score=28.38 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH-----------------HhHHHHHHhHh
Q 013958 318 SLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVE-----------------KEREMIQVADV 380 (433)
Q Consensus 318 s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~e-----------------eER~MLqmAEv 380 (433)
.+-.++.++|++.+.+...+.+..+.-..|.++....+..-.--........ ..-++.-+.+-
T Consensus 914 ~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 914 ELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888887777777767777766665543332221111111 12223333444
Q ss_pred hhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 013958 381 LREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS 415 (433)
Q Consensus 381 WREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL 415 (433)
.+.-..+-++.++-+.+-.-.+.+..+.-|+..|.
T Consensus 994 l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld 1028 (1294)
T KOG0962|consen 994 IRNQYQRERNLKDNLTLRNLERKLKELERELSELD 1028 (1294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666555444455555555555443
No 268
>PF13514 AAA_27: AAA domain
Probab=24.15 E-value=1.3e+03 Score=27.56 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 013958 235 AELERARLQVNQLIQEQRSDQSEISYLMKC 264 (433)
Q Consensus 235 ~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kq 264 (433)
.+|+.++..+..+..........+...+..
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 647 (1111)
T PF13514_consen 618 EELRAARAELEALRARRAAARAALAAALAA 647 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555544444444444444444
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=24.11 E-value=6.8e+02 Score=24.39 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-------------
Q 013958 280 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD------------- 346 (433)
Q Consensus 280 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~------------- 346 (433)
|.-.|+.|.+.|..=|+.--+.=...+++.+++.+....+.+ -+++++..|..==++||+.
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~------~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE------WQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred -----hcccHHHHHHHHHHhHHHHHHHHH
Q 013958 347 -----INDDKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 347 -----I~e~kaEve~lKres~k~~eE~ee 370 (433)
+....+.++.|+....++...+++
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 270
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.05 E-value=7.4e+02 Score=24.82 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958 335 VIEQVCDELARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 335 llE~vCdELAk~I~e~kaEve~lKres~k~~e 366 (433)
=||+-...+-..|...+.||+.|+.+..+++|
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666653
No 271
>PRK01919 tatB sec-independent translocase; Provisional
Probab=23.95 E-value=3.6e+02 Score=26.03 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhHHH
Q 013958 279 VVEAAIESIAGELEVE 294 (433)
Q Consensus 279 ki~aai~slk~ELe~E 294 (433)
+++.++.++++|+++|
T Consensus 38 k~Rr~~~d~K~ev~~E 53 (169)
T PRK01919 38 RAQRYINDVKAEVSRE 53 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566666666665
No 272
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.87 E-value=1.2e+03 Score=27.18 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=62.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---cccHHHHHHHHHHhHHHHHHHH-------
Q 013958 300 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI---NDDKSEVEELKRESAIALEEVE------- 369 (433)
Q Consensus 300 r~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I---~e~kaEve~lKres~k~~eE~e------- 369 (433)
-+|.--.+|-.||.|.|..=...++||-.---... -|=|.| +.-.-|.|.||++..++.||.+
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi-------slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSELEEENI-------SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555567888888888888888887743222222 233443 4455688889998888777654
Q ss_pred HhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 013958 370 KEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 370 eER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~s 417 (433)
+--+.=.||| -+|.||=-+|..=-.+=.-|+-||..|+..
T Consensus 146 e~~rLk~iae--------~qleEALesl~~EReqk~~LrkEL~~~~~~ 185 (717)
T PF09730_consen 146 EAARLKEIAE--------KQLEEALESLKSEREQKNALRKELDQHLNI 185 (717)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333334444 345566555544444555677777776654
No 273
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.78 E-value=1.4e+02 Score=33.08 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=29.6
Q ss_pred HHHhhhcccHHHHHHHH----HHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhh
Q 013958 342 ELARDINDDKSEVEELK----RESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQL 397 (433)
Q Consensus 342 ELAk~I~e~kaEve~lK----res~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~l 397 (433)
||.-.|.+..-=||.|| +|..+++.++|||..|- -|+||...+-|-++
T Consensus 573 elr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr--------~~lemei~~lkka~ 624 (627)
T KOG4348|consen 573 ELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMR--------SNLEMEIEKLKKAV 624 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHhhHHHHHHHh
Confidence 33344444444455555 44567777899998883 36778777766554
No 274
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.36 E-value=7.4e+02 Score=24.58 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELE 292 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe 292 (433)
+..|+.+|+..+..+.+|...-....-+++.|.|....|+..-+.--.+++-..|-.+-+.|+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLe 104 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVG 104 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 356777888888888888777777778888999988888866555555555555545555544
No 275
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=23.36 E-value=5.7e+02 Score=23.25 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=17.5
Q ss_pred HHHHHhhhcccHHHHHHHHHHh-HHHHHHHHHhHHHHHHhH
Q 013958 340 CDELARDINDDKSEVEELKRES-AIALEEVEKEREMIQVAD 379 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres-~k~~eE~eeER~MLqmAE 379 (433)
-..++..+...++....++.+. ..+ +-|-|=.|+-|++
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~--q~EldDLL~ll~D 95 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEA--QSELDDLLVLLGD 95 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHh
Confidence 3444444444455555554442 112 2344555666665
No 276
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=5.6e+02 Score=23.19 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhchHH----HHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q 013958 238 ERARLQVNQLIQEQRSDQSE----ISYLMKCFAEEKAAWKNKEREVVEAAIESIA 288 (433)
Q Consensus 238 ~~Ar~~I~eL~~E~~s~~~e----ie~l~KqlaEEk~~wK~KE~eki~aai~slk 288 (433)
.+++--|++|-..-..+..+ ++.||++.-++.-.|-.|...+|+.+++.+-
T Consensus 24 ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 24 EKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLE 78 (108)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhcc
Confidence 35556666666655554443 7788888888888888888888877777643
No 277
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.25 E-value=5.9e+02 Score=28.90 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHhhhHHHHhHHHHHHHHHHH----HHHHHHHhHHHHHHH
Q 013958 295 RKLRRRFESLNKKLGKELAETK----HSLLKAVKDLDTEKR 331 (433)
Q Consensus 295 Rk~Rrr~E~ln~KL~~ELaE~K----~s~~~alkelE~ERk 331 (433)
.++|+..|.++....+||.+.. ..+..--+.||.+.+
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~ 503 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHA 503 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 3667777777777777774443 333344444544443
No 278
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.89 E-value=3.5e+02 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=31.2
Q ss_pred hhchHHHHHHHHhhcCCCCC---CCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013958 203 LTTSKELLKIINRMWGQEDR---PSSSMSLVSALHAELERARLQVNQLIQE 250 (433)
Q Consensus 203 L~TS~ELlkvlnriw~leeq---~~s~~Slv~aL~~EL~~Ar~~I~eL~~E 250 (433)
|.....-|-.+-.-+++-|- -.+.+.+|..|+.||-.++++...|..-
T Consensus 258 l~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 258 LGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344444455443 3367788999999999999998888664
No 279
>PRK12704 phosphodiesterase; Provisional
Probab=22.69 E-value=1.1e+03 Score=26.13 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=5.0
Q ss_pred HHHHHHHHhHHH
Q 013958 283 AIESIAGELEVE 294 (433)
Q Consensus 283 ai~slk~ELe~E 294 (433)
-+...+.|++.|
T Consensus 65 E~~~~R~Ele~e 76 (520)
T PRK12704 65 EIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 280
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.54 E-value=7.2e+02 Score=24.14 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
.++..+--..++.+...+++..+..+..+++++.+-.+ .....+-++.+..|++.=+.-.++++..-.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e------------~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 13 ASSAAAAAATLDQAQQVQQQWVQAAQQSQKRIDQWDDE------------KQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013958 307 KLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 350 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~ 350 (433)
.+-.++++.+..+...-+- ++.-.-+|.+++|+|-.-|..|
T Consensus 81 ~q~~el~~L~~qi~~~~~~---~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 81 SQEQELASLEQQIEQIEET---RQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
No 281
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.45 E-value=1.1e+03 Score=26.14 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958 310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCD 341 (433)
Q Consensus 310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCd 341 (433)
+||.+-+..|.++.--|+.+++.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 56677777788877777777777777766655
No 282
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=22.28 E-value=7.3e+02 Score=24.15 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 356 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~ 356 (433)
..-+..++..+..+.+.-=. .|..++..|..+-.-+....+++|+.||. +.+-.-.+.+.+.+-.+.++.
T Consensus 60 ~gs~~~a~~~il~~~e~lA~-------~h~~~a~~L~~~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leK 129 (234)
T cd07652 60 QGSFSNAYHSSLEFHEKLAD-------NGLRFAKALNEMSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEK 129 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHH
Confidence 34556677777776554333 34455555555555566788888888886 344444567777777788888
Q ss_pred HHHHhHHHHHHHHHhHHH-------H----HHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 357 LKRESAIALEEVEKEREM-------I----QVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 357 lKres~k~~eE~eeER~M-------L----qmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
-|..-...++|+|.=|.- . ...-.=-||-.+-|..+|+.+.-.+....+.++.++..
T Consensus 130 AK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 130 AKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred HHHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877632211 0 01111246677778888988888888888888877753
No 283
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.28 E-value=1.7e+02 Score=26.45 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=30.6
Q ss_pred ccccccccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013958 192 VKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQR 252 (433)
Q Consensus 192 ~k~rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~ 252 (433)
+--++++.+.+|+..++++...... + .....+..+++.-..+|.+|++...
T Consensus 48 ~I~~lr~~G~sL~eI~~~l~~~~~~----~------~~~~~~~~~~~~l~~~i~~Le~~l~ 98 (134)
T cd04779 48 LIEHLKGQRLSLAEIKDQLEEVQRS----D------KEQREVAQEVQLVCDQIDGLEHRLK 98 (134)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhccc----c------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345689999999888887654431 0 1233455556666666666655443
No 284
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=22.19 E-value=7e+02 Score=23.91 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhh----hHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKN----KEREVVEAAIESIAGELEVERKLRRRFESLNK 306 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~----KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 306 (433)
=.||++.|.+|++.+.+-..+- +...|+++|...+-+.++ .-..-|-++=..|+..|....-.-..+...|.
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~k 146 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNK 146 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4689999999999999985544 567888888887765443 22233444444455555443333333333333
No 285
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.19 E-value=7.2e+02 Score=23.99 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=50.3
Q ss_pred chHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 013958 205 TSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAI 284 (433)
Q Consensus 205 TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai 284 (433)
+.-=|+-+|+++. ++-+..=|+.=+..|..-+.+-...+.+.+.+..++.+.-..=+.+-++.+..+.
T Consensus 62 ~FliL~~lL~k~~------------~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar 129 (204)
T PRK09174 62 TFGLFYLFMSRVI------------LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAR 129 (204)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666652 3334444777788888888888888888888888887777666665565555555
Q ss_pred HHHHHHhHHH
Q 013958 285 ESIAGELEVE 294 (433)
Q Consensus 285 ~slk~ELe~E 294 (433)
...+.+.+.+
T Consensus 130 ~ea~~~~e~~ 139 (204)
T PRK09174 130 EAAKAKAEAE 139 (204)
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 286
>PRK09039 hypothetical protein; Validated
Probab=22.16 E-value=8.9e+02 Score=25.09 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred HhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 013958 384 ERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 384 ERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~s 417 (433)
.++|.-|.+++....+....++.|..+|+.=|..
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888889999999999888754
No 287
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.74 E-value=9.1e+02 Score=25.02 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHH
Q 013958 336 IEQVCDELARDINDDKSEVEELKRESAIALEEVEKERE 373 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~ 373 (433)
||+..-++=+++.+---+++.+|+....++.|+++=|.
T Consensus 124 ~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 124 LEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555566666666655555444333
No 288
>PRK14157 heat shock protein GrpE; Provisional
Probab=21.73 E-value=5e+02 Score=26.03 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHH
Q 013958 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK 269 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk 269 (433)
.|..+|...+.+|.+|...-....-+.+.+.|+...|+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~ 118 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQ 118 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776655666667777777776665
No 289
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.59 E-value=1.9e+02 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh
Q 013958 222 RPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF 265 (433)
Q Consensus 222 q~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 265 (433)
.|.-|...|.+|+-|+.....-|..|+++-...=.+.+.|++.+
T Consensus 157 KHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 157 KHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 290
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.21 E-value=1.4e+03 Score=27.07 Aligned_cols=164 Identities=23% Similarity=0.257 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 312 (433)
-+.|||..-.+|+.|..--.. ..-.-..-++.+|.+..-..-+..|=.-|+-.++.|.-|..|.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~lea----------------Reaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEA----------------REAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHH
Confidence 488999998888888654431 1112222345566666666667777777778888888888887
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHhhhcccH-HHHHHHHHHhHHHHHHHH-HhHHHHHHhHhhhHHhhhhh
Q 013958 313 AETKHSLLKAVKDLDTEKRA-RVVIEQVCDELARDINDDK-SEVEELKRESAIALEEVE-KEREMIQVADVLREERAQIK 389 (433)
Q Consensus 313 aE~K~s~~~alkelE~ERka-RellE~vCdELAk~I~e~k-aEve~lKres~k~~eE~e-eER~MLqmAEvWREERVQMK 389 (433)
-.-=+.+-+-++-+=+||-+ |.-+-.+-+|||-.|-.|+ +|-.++-+- +..|-| --+..||=+-.-+-=|.+.|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~---lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQ---LMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 76666666777777777754 4446667778877776543 333333222 122221 23556666665555555444
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 013958 390 LSEAKYQLEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 390 L~eAk~~leeK~s~ldkL~~elE~FL~s 417 (433)
- +...++.|+..+-+|..|.+..=..
T Consensus 485 e--~etl~~K~ge~i~~L~sE~~~lk~i 510 (961)
T KOG4673|consen 485 E--AETLEEKKGELITKLQSEENKLKSI 510 (961)
T ss_pred h--hhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3 3333445555888888877654333
No 291
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.01 E-value=7.2e+02 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 013958 332 ARVVIEQVCDELARDIN 348 (433)
Q Consensus 332 aRellE~vCdELAk~I~ 348 (433)
.+.||+ |+|-|-+.+.
T Consensus 71 ~~~lLp-v~DnlerAl~ 86 (172)
T PRK14147 71 LGELLP-VFDSLDAGLT 86 (172)
T ss_pred HHHHhh-hhhHHHHHHh
Confidence 344443 6666666553
No 292
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.90 E-value=7e+02 Score=23.35 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 013958 234 HAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELA 313 (433)
Q Consensus 234 ~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELa 313 (433)
..=|+.=+..|...+.+-...+.+.+.+..++.+.-..++..-.+.+..+......+.+..+ +..+....+.++
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~------~~A~~e~~~~~a 130 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAI------AKADAEIAAKAA 130 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 33367777788888888888888888888888887777776666666655444444433322 233444555555
Q ss_pred HHHHHH
Q 013958 314 ETKHSL 319 (433)
Q Consensus 314 E~K~s~ 319 (433)
+++.-+
T Consensus 131 ea~~~I 136 (181)
T PRK13454 131 ESEKRI 136 (181)
T ss_pred HHHHHH
Confidence 544433
No 293
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.89 E-value=2.3e+02 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 268 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 268 (433)
...|+.||+.++.++.+-.++-...=.....||.+++++
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~ 65 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQD 65 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999988888777766655445556677777765
No 294
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.74 E-value=1.1e+03 Score=28.82 Aligned_cols=102 Identities=25% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 013958 242 LQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 321 (433)
Q Consensus 242 ~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~ 321 (433)
++-.++.+=+-+..++-..|++++..-+ ++.|+. -..+++.-+.||+.|.=..+.-.+.+.|..-.+..+++
T Consensus 1075 aq~~Q~k~LK~~~e~e~kElk~~l~kkr-------~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k 1146 (1189)
T KOG1265|consen 1075 AQTNQTKALKESLEKETKELKKKLDKKR-------MEDIKV-DKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSK 1146 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958 322 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 322 alkelE~ERkaRellE~vCdELAk~I~e~kaEve 355 (433)
-...| .++--+.+|.+.++ ..--+.+++.+
T Consensus 1147 ~~e~L--~k~~~~~leql~e~--~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1147 RQEQL--VKKHLEVLEQLAEE--EKALDAEAEQE 1176 (1189)
T ss_pred HHHHH--HHHHHHHHHHHHHh--hHHHHHHHHHH
No 295
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.62 E-value=8.3e+02 Score=24.13 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVV 280 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki 280 (433)
+.+|+.+|......+.+|...-.....+.+.+.|..+.|+...+.--.+++
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~ 113 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDV 113 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444445555566666666665544443333333
No 296
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.48 E-value=1.1e+03 Score=25.50 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=48.9
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT-------EKRARVVIEQVCDELARDINDDKSEVEELKR 359 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~-------ERkaRellE~vCdELAk~I~e~kaEve~lKr 359 (433)
+++-++.-..--+++.+-|.||.++|--+..-|.+.--+... -+....-++---|++.++++|.+.|...|-|
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 333344444445678889999999999988888776443321 1222333455557777888888888777777
Q ss_pred HhH
Q 013958 360 ESA 362 (433)
Q Consensus 360 es~ 362 (433)
|..
T Consensus 170 ELa 172 (401)
T PF06785_consen 170 ELA 172 (401)
T ss_pred HHH
Confidence 643
No 297
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.42 E-value=1.2e+03 Score=26.06 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHhH
Q 013958 295 RKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARD---INDDKSEVEELKRESA 362 (433)
Q Consensus 295 Rk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~---I~e~kaEve~lKres~ 362 (433)
+.++.+++.++..+..|+..+..++.. +++..+.....|+.--+++-.. +...+.+...|.|+.+
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~---~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLM---QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 346677777778887777766555433 3443333333344433333332 3344556666666544
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.38 E-value=8.4e+02 Score=24.12 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=50.4
Q ss_pred HHHHhHHHHH---HHHHHHHHHHHHH---------hHHHHHHHHHHHH-HHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 013958 301 FESLNKKLGK---ELAETKHSLLKAV---------KDLDTEKRARVVI-EQVCDELARDINDDKSEVEELKRESAIALEE 367 (433)
Q Consensus 301 ~E~ln~KL~~---ELaE~K~s~~~al---------kelE~ERkaRell-E~vCdELAk~I~e~kaEve~lKres~k~~eE 367 (433)
.+.+..|++. ||++.+..+..+. .+.+ +-++...- .+.-+.|-.++..+++|+...++..+.....
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~d-eak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESD-EAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccc-hhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3446666655 6777776666650 1111 11111111 2334445555555566665555555555555
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958 368 VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLE 412 (433)
Q Consensus 368 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE 412 (433)
.+.||. +|.||.=. ..-=.-+|...|-.|=+=-..||
T Consensus 161 Fe~ER~------~W~eEKek--Vi~YQkQLQ~nYvqMy~rn~~LE 197 (202)
T PF06818_consen 161 FEQERR------TWQEEKEK--VIRYQKQLQQNYVQMYQRNQALE 197 (202)
T ss_pred HHHHHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677775 58877532 22222344444544444434444
No 299
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=20.22 E-value=3.7e+02 Score=21.30 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 013958 292 EVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLD 327 (433)
Q Consensus 292 e~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE 327 (433)
+.|.|+++++++.-..|..++.....++..+|++=+
T Consensus 10 ~feqkskeqa~ste~~vk~af~~~E~~l~~~L~~s~ 45 (52)
T PF04837_consen 10 DFEQKSKEQAESTEQMVKNAFEQHEKSLSAALKESE 45 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 348899999999999999999999999999888754
No 300
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.13 E-value=9e+02 Score=24.34 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhHHH-HH-HhhhhHHHHHHHHHHHHHHHhHHHHHHhh-----------hHHHHhHHHHHHHHHHHHHHH
Q 013958 254 DQSEISYLMKCFAEE-KA-AWKNKEREVVEAAIESIAGELEVERKLRR-----------RFESLNKKLGKELAETKHSLL 320 (433)
Q Consensus 254 ~~~eie~l~KqlaEE-k~-~wK~KE~eki~aai~slk~ELe~ERk~Rr-----------r~E~ln~KL~~ELaE~K~s~~ 320 (433)
.-++-++|-+++..| .. +.|+.-.-| ++|++.|+..--+|..+-+ +.-.-|..+-.|.-.+=-...
T Consensus 33 L~KKqe~Le~ki~~e~e~~A~k~~tkNK-R~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A 111 (221)
T KOG1656|consen 33 LEKKQEFLEKKIEQEVENNARKYGTKNK-RMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAA 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 344557888999888 33 565555533 7899999888777776532 112224445555555555555
Q ss_pred HHHhHH-------------HHHHHHHHHHHHHHHHHHhhhc
Q 013958 321 KAVKDL-------------DTEKRARVVIEQVCDELARDIN 348 (433)
Q Consensus 321 ~alkel-------------E~ERkaRellE~vCdELAk~I~ 348 (433)
+|||-. ..=+-..++.+++.|-+..-||
T Consensus 112 ~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg 152 (221)
T KOG1656|consen 112 KAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVG 152 (221)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555432 2234445566666666665554
Done!