Query 013958
Match_columns 433
No_of_seqs 93 out of 109
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 02:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.1 0.013 4.5E-07 53.0 15.1 131 206-359 5-136 (154)
2 3oja_B Anopheles plasmodium-re 96.4 0.049 1.7E-06 55.2 14.3 125 233-365 454-578 (597)
3 2eqb_B RAB guanine nucleotide 96.2 0.065 2.2E-06 45.4 11.7 91 233-349 3-94 (97)
4 1c1g_A Tropomyosin; contractIl 94.6 2 6.8E-05 37.2 26.4 30 231-260 9-38 (284)
5 1i84_S Smooth muscle myosin he 93.1 0.017 5.8E-07 64.9 0.0 32 230-261 957-988 (1184)
6 1i84_S Smooth muscle myosin he 93.0 0.23 7.7E-06 56.0 8.8 19 230-248 859-877 (1184)
7 2dfs_A Myosin-5A; myosin-V, in 92.7 2.4 8.1E-05 47.9 16.4 130 246-382 918-1054(1080)
8 2e7s_A RAB guanine nucleotide 92.5 0.56 1.9E-05 41.8 8.9 108 232-355 12-120 (135)
9 1c1g_A Tropomyosin; contractIl 92.3 5.1 0.00017 34.6 26.5 11 404-414 267-277 (284)
10 2dfs_A Myosin-5A; myosin-V, in 92.2 2.9 0.0001 47.2 16.2 81 278-362 924-1008(1080)
11 3oja_B Anopheles plasmodium-re 91.9 3.8 0.00013 41.5 15.4 65 277-341 472-540 (597)
12 2hg7_A Phage-like element PBSX 90.5 0.049 1.7E-06 46.5 0.0 39 283-321 64-102 (110)
13 3u59_A Tropomyosin beta chain; 90.0 5.1 0.00017 33.0 11.8 75 230-308 11-95 (101)
14 3u1c_A Tropomyosin alpha-1 cha 88.4 7.7 0.00026 32.2 11.8 74 230-308 11-95 (101)
15 2v71_A Nuclear distribution pr 82.6 31 0.0011 32.1 14.5 32 228-259 42-73 (189)
16 2w6b_A RHO guanine nucleotide 81.7 4.3 0.00015 31.3 6.5 24 287-310 29-52 (56)
17 2p22_C Protein SRN2; endosome, 79.7 33 0.0011 31.6 13.1 28 333-360 137-166 (192)
18 3oja_A Leucine-rich immune mol 79.4 18 0.00063 35.8 12.1 67 294-360 412-478 (487)
19 2ocy_A RAB guanine nucleotide 79.0 37 0.0013 30.7 15.5 91 309-413 50-140 (154)
20 3vkg_A Dynein heavy chain, cyt 78.9 1.5E+02 0.0052 37.7 26.4 31 340-370 2037-2067(3245)
21 2w6b_A RHO guanine nucleotide 77.7 6.3 0.00022 30.4 6.3 38 308-345 15-52 (56)
22 3vkg_A Dynein heavy chain, cyt 77.3 55 0.0019 41.5 17.6 51 312-362 1950-2000(3245)
23 3ol1_A Vimentin; structural ge 76.0 35 0.0012 28.9 12.7 50 254-303 18-69 (119)
24 3na7_A HP0958; flagellar bioge 74.6 55 0.0019 30.5 20.1 49 319-367 92-140 (256)
25 3o0z_A RHO-associated protein 70.6 65 0.0022 29.5 14.5 47 276-322 63-116 (168)
26 3swk_A Vimentin; cytoskeleton, 70.4 41 0.0014 27.2 10.9 56 305-360 16-78 (86)
27 2eqb_B RAB guanine nucleotide 69.6 49 0.0017 27.9 10.4 79 230-315 7-95 (97)
28 3oja_A Leucine-rich immune mol 69.6 91 0.0031 30.8 14.4 29 336-364 433-461 (487)
29 2fxo_A Myosin heavy chain, car 69.4 53 0.0018 28.0 15.0 75 277-358 15-89 (129)
30 2v4h_A NF-kappa-B essential mo 66.9 35 0.0012 29.5 9.1 34 320-360 72-105 (110)
31 3iyk_A VP5; icosahedral virus; 65.6 60 0.0021 34.4 12.3 32 218-255 79-110 (526)
32 2v0o_A FCHO2, FCH domain only 65.2 79 0.0027 28.5 18.2 22 307-328 126-147 (276)
33 3l4f_A RHO guanine nucleotide 63.5 19 0.00064 28.3 6.2 42 308-349 12-53 (61)
34 3i00_A HIP-I, huntingtin-inter 62.9 44 0.0015 28.8 9.1 66 228-315 15-80 (120)
35 1cii_A Colicin IA; bacteriocin 59.6 69 0.0023 34.0 11.4 26 265-290 388-413 (602)
36 2i1j_A Moesin; FERM, coiled-co 59.3 34 0.0012 35.9 9.3 103 247-361 291-400 (575)
37 2b5u_A Colicin E3; high resolu 56.1 1.8E+02 0.0063 30.9 13.9 69 277-356 344-427 (551)
38 2e7s_A RAB guanine nucleotide 55.2 61 0.0021 28.8 8.8 88 310-411 39-126 (135)
39 3ol1_A Vimentin; structural ge 53.8 1E+02 0.0035 26.1 14.5 66 232-302 17-89 (119)
40 3tnu_A Keratin, type I cytoske 53.7 1E+02 0.0035 26.2 10.2 62 229-291 32-93 (131)
41 3na7_A HP0958; flagellar bioge 53.0 1.4E+02 0.0049 27.6 21.0 33 337-369 124-156 (256)
42 3tnu_B Keratin, type II cytosk 52.8 1.1E+02 0.0036 26.0 11.7 62 229-291 30-91 (129)
43 3ok8_A Brain-specific angiogen 51.7 1.6E+02 0.0056 27.9 15.9 126 204-350 68-203 (222)
44 3ghg_A Fibrinogen alpha chain; 50.7 1.2E+02 0.0041 32.4 11.6 30 281-310 63-92 (562)
45 2b5u_A Colicin E3; high resolu 49.8 2.7E+02 0.0091 29.8 14.5 50 368-418 383-432 (551)
46 1f5n_A Interferon-induced guan 49.5 1E+02 0.0035 32.6 11.1 93 322-417 485-582 (592)
47 3cl3_D NF-kappa-B essential mo 48.8 52 0.0018 29.2 7.3 92 230-328 4-101 (130)
48 4ani_A Protein GRPE; chaperone 48.1 77 0.0026 29.8 8.8 62 229-290 60-121 (213)
49 1deq_A Fibrinogen (alpha chain 47.7 2.4E+02 0.0082 29.0 12.9 28 242-269 91-118 (390)
50 1k1f_A Breakpoint cluster regi 45.9 22 0.00076 28.5 4.1 42 230-271 28-69 (72)
51 3haj_A Human pacsin2 F-BAR; pa 45.3 2.5E+02 0.0087 28.2 20.5 36 297-332 130-165 (486)
52 3jsv_C NF-kappa-B essential mo 41.7 1.6E+02 0.0054 24.8 9.3 75 266-365 14-88 (94)
53 3a7p_A Autophagy protein 16; c 40.4 2.1E+02 0.0072 25.9 12.6 80 229-317 59-138 (152)
54 3hnw_A Uncharacterized protein 38.5 1.9E+02 0.0066 25.1 9.4 64 287-364 66-129 (138)
55 3u06_A Protein claret segregat 37.3 67 0.0023 32.5 7.1 54 230-288 5-58 (412)
56 1ic2_A Tropomyosin alpha chain 36.4 1.5E+02 0.0053 23.2 10.5 24 230-253 8-31 (81)
57 2q12_A DIP13 alpha, DCC-intera 33.1 2.8E+02 0.0097 25.2 13.4 50 322-372 184-244 (265)
58 3mq9_A Bone marrow stromal ant 32.3 3.7E+02 0.013 26.3 13.8 27 346-372 444-470 (471)
59 4etp_A Kinesin-like protein KA 31.0 1E+02 0.0035 31.0 7.2 39 230-268 5-43 (403)
60 3s9g_A Protein hexim1; cyclin 30.5 2E+02 0.007 24.5 7.8 27 340-366 60-86 (104)
61 1m1j_B Fibrinogen beta chain; 29.7 1.9E+02 0.0064 30.2 9.0 57 207-266 103-159 (464)
62 3bas_A Myosin heavy chain, str 29.6 2.2E+02 0.0075 22.8 11.6 65 279-357 18-82 (89)
63 3mq7_A Bone marrow stromal ant 28.8 3E+02 0.01 24.1 10.8 41 231-271 28-68 (121)
64 3hnw_A Uncharacterized protein 28.3 1.8E+02 0.0062 25.3 7.5 19 398-416 116-134 (138)
65 4e61_A Protein BIM1; EB1-like 28.2 86 0.0029 26.8 5.2 33 227-259 3-35 (106)
66 3l4f_A RHO guanine nucleotide 27.8 1.2E+02 0.0042 23.7 5.6 27 287-313 26-52 (61)
67 3vem_A Helicase protein MOM1; 26.6 3.2E+02 0.011 23.7 8.9 38 286-329 61-98 (115)
68 4b9q_A Chaperone protein DNAK; 26.6 4.5E+02 0.015 27.2 11.4 14 334-347 563-576 (605)
69 3mq9_A Bone marrow stromal ant 26.5 4.6E+02 0.016 25.6 14.1 23 336-358 448-470 (471)
70 1go4_E MAD1 (mitotic arrest de 25.9 1.1E+02 0.0039 25.8 5.5 61 346-413 13-86 (100)
71 4dyl_A Tyrosine-protein kinase 25.8 4.8E+02 0.017 25.6 13.8 28 331-358 168-195 (406)
72 2yy0_A C-MYC-binding protein; 24.2 77 0.0026 23.7 3.7 32 226-257 17-48 (53)
73 1m1j_A Fibrinogen alpha subuni 24.2 3.7E+02 0.013 28.4 9.9 73 181-269 43-116 (491)
74 1h7c_A Tubulin-specific chaper 23.8 3.2E+02 0.011 22.8 8.0 30 237-266 9-38 (108)
75 2ykt_A Brain-specific angiogen 23.1 4.8E+02 0.016 24.6 15.4 147 210-362 24-186 (253)
76 2j69_A Bacterial dynamin-like 22.9 6.9E+02 0.024 26.4 12.9 72 255-342 598-669 (695)
77 3m91_A Proteasome-associated A 22.6 1.8E+02 0.0061 21.8 5.4 27 302-328 22-48 (51)
78 3okq_A BUD site selection prot 22.4 4.2E+02 0.014 23.7 10.9 78 247-346 59-136 (141)
79 3s84_A Apolipoprotein A-IV; fo 21.7 5.2E+02 0.018 24.5 19.1 174 229-415 82-273 (273)
80 3m48_A General control protein 21.5 65 0.0022 22.5 2.6 23 336-358 5-27 (33)
81 3ni0_A Bone marrow stromal ant 21.1 3.8E+02 0.013 22.7 8.5 41 231-271 21-61 (99)
82 3q8t_A Beclin-1; autophagy, AT 20.4 3.5E+02 0.012 22.1 11.9 65 308-379 9-74 (96)
83 3ghg_C Fibrinogen gamma chain; 20.4 1.5E+02 0.0051 30.5 6.2 71 195-265 46-128 (411)
84 3ghg_A Fibrinogen alpha chain; 20.3 8.2E+02 0.028 26.2 12.8 66 252-325 77-142 (562)
85 2oxj_A Hybrid alpha/beta pepti 20.3 71 0.0024 22.5 2.6 23 336-358 6-28 (34)
86 2fxo_A Myosin heavy chain, car 20.1 3.9E+02 0.013 22.5 16.4 69 285-360 51-119 (129)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.15 E-value=0.013 Score=53.04 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=101.1
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 013958 206 SKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIE 285 (433)
Q Consensus 206 S~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~ 285 (433)
|+.|+..+|+.=.|+|. +..++.+|..++.+|++|+..+. +++.+. .+ ..-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~--------~~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----RE--------LSDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----TH--------HHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HH--------HhhhhHHHH
Confidence 68899999998777764 57888999999999999998764 233332 22 223566777
Q ss_pred HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 013958 286 SIAGELEVERKLRRRFESLNKKLGKELAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKR 359 (433)
Q Consensus 286 slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKr 359 (433)
.+.++|..|+..|..+|....++-.||-|.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+.|-+.-++.|-.
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997655 55555556678999999988888888887776665555443
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.39 E-value=0.049 Score=55.19 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 312 (433)
|..|+.+-+..|+.|+.+.......+..+-..+.+.+..+.....+. .. .++.|+ +..++.+..+.++..++
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-~~----~~~~l~---~~~~~~~~~~~~~~~~~ 525 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL-AR----SSDNLN---KVFTHLKERQAFKLRET 525 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-SC----HHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc-CC----HHHHHH---HHHHHHHhhhhhhHHHH
Confidence 44555555666666666555544444444444444333322000000 00 001111 11223333555555666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHH
Q 013958 313 AETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIAL 365 (433)
Q Consensus 313 aE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~ 365 (433)
...+.++..-.++|+..++.++.||..+++.-+.+.+.+.|+..++.+.....
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666777777777777777777776666666666666665544443
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.21 E-value=0.065 Score=45.38 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHH
Q 013958 233 LHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKEL 312 (433)
Q Consensus 233 L~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 312 (433)
|..+|+.+|.+|.+|..+... +.+-+..|..+|..|+..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888888888866543 334445588889999999999999999999999
Q ss_pred HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013958 313 AETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDIND 349 (433)
Q Consensus 313 aE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e 349 (433)
-+.-.| |..|=+=.-.+|+.+..+|.--+.|...|.|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886655 4555555556677777777766666655544
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.62 E-value=2 Score=37.15 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISY 260 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~ 260 (433)
.+|+.+++.....+.+|..+......+++.
T Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 9 QMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.09 E-value=0.017 Score=64.94 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYL 261 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l 261 (433)
+..|+.+++..+..+.+|..+......+++.+
T Consensus 957 l~~L~~eleele~~l~~l~~e~~~le~~l~~l 988 (1184)
T 1i84_S 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988 (1184)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444444433
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.01 E-value=0.23 Score=55.99 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013958 230 VSALHAELERARLQVNQLI 248 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~ 248 (433)
+..|+.||...+..+..+.
T Consensus 859 l~~L~~eL~el~~~L~~le 877 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAE 877 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444433
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.73 E-value=2.4 Score=47.91 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHhhhchHHHHHHHHHhHHHHHHhh------hhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHH
Q 013958 246 QLIQEQRSDQSEISYLMKCFAEEKAAWK------NKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSL 319 (433)
Q Consensus 246 eL~~E~~s~~~eie~l~KqlaEEk~~wK------~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~ 319 (433)
+|......-..+|..|-.++.++...++ ....++...-+..|+.++++..+.-...+.+. .++.+...-+
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~----~~v~~L~~e~ 993 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT----NRVLSLQEEI 993 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3333344455556666666655433332 11224455666677776666666543333222 2222222233
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHH-hHHHHHHhHhhh
Q 013958 320 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK-EREMIQVADVLR 382 (433)
Q Consensus 320 ~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~ee-ER~MLqmAEvWR 382 (433)
...-+++++..+..+.+|+-++++-. +.+..|..|+.+-.+++..+++ |..++..++-+.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555666665542 4445555555555555554433 335555555544
No 8
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.55 E-value=0.56 Score=41.76 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHH
Q 013958 232 ALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKE 311 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 311 (433)
.++.+|.-.+++|++|+..+. +.+.+.+.+ ..+..-+..+..+|..|+..|..+|.-+.++-.|
T Consensus 12 ~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 75 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 75 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888665 233333332 1334445669999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958 312 LAETKHS-LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 312 LaE~K~s-~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve 355 (433)
|.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..++|-+.-++
T Consensus 76 lE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~ 120 (135)
T 2e7s_A 76 VEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLD 120 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997655 5556555666788888888877777777766544333
No 9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.30 E-value=5.1 Score=34.57 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 013958 404 VDKLRSQLEAF 414 (433)
Q Consensus 404 ldkL~~elE~F 414 (433)
+.++..+++.+
T Consensus 267 ~~~~~~~~~~~ 277 (284)
T 1c1g_A 267 YKAISEELDHA 277 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.15 E-value=2.9 Score=47.18 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHH----HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 013958 278 EVVEAAIESIAGELEVERKLRRRFES----LNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSE 353 (433)
Q Consensus 278 eki~aai~slk~ELe~ERk~Rrr~E~----ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaE 353 (433)
.+....|..|...|+++.+....+.. +..++..|.++. .+.+.+||...+...-+++...+|-.+|.+.+.+
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L----~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL----RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777665444443332 334444444443 2333444444444444444445555555555555
Q ss_pred HHHHHHHhH
Q 013958 354 VEELKRESA 362 (433)
Q Consensus 354 ve~lKres~ 362 (433)
+..+..+..
T Consensus 1000 ~~~~~ke~~ 1008 (1080)
T 2dfs_A 1000 LHQTQTEKK 1008 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.93 E-value=3.8 Score=41.46 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh----hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRR----RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCD 341 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rr----r~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCd 341 (433)
.....+.++.++.+++..+..-+ .++....+|.+++..++.-......++.+.+++-.-..+.++
T Consensus 472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 34456677777777776655433 222333556666665555555555555554444433333333
No 12
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=90.53 E-value=0.049 Score=46.54 Aligned_cols=39 Identities=46% Similarity=0.663 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH
Q 013958 283 AIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK 321 (433)
Q Consensus 283 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~ 321 (433)
-|+.+..||..|+=+|+++|.+|.-|++||+.+|.++..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888889999999999999999999999987643
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.96 E-value=5.1 Score=33.03 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhh------HHHHHHHHHHHHHHHhHHHHHHhh----
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNK------EREVVEAAIESIAGELEVERKLRR---- 299 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~K------E~eki~aai~slk~ELe~ERk~Rr---- 299 (433)
+.+|+.|.+.|..++.+++........ -..++.+|-.+.+.| +.|++...+......|+...+.+-
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~----~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAED----RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888776544322 222223332222221 356777777788888888888877
Q ss_pred hHHHHhHHH
Q 013958 300 RFESLNKKL 308 (433)
Q Consensus 300 r~E~ln~KL 308 (433)
.+.+||||+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445566665
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.36 E-value=7.7 Score=32.19 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch-------HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhh---
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQ-------SEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRR--- 299 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~-------~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rr--- 299 (433)
|.+|+.|.+.|..++.+++...+... .+|..|-+++.- =--+-|++...+......|+...+..-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~-----lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV-----TEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988888876544322 233344333210 001356777778888888888888877
Q ss_pred -hHHHHhHHH
Q 013958 300 -RFESLNKKL 308 (433)
Q Consensus 300 -r~E~ln~KL 308 (433)
.+.+||||+
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 555666665
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.57 E-value=31 Score=32.05 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEIS 259 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie 259 (433)
-|=..|..||+++..++++|.......+.+++
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e 73 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVE 73 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544443333333
No 16
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=81.74 E-value=4.3 Score=31.34 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGK 310 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ 310 (433)
|+.=||.|.++|+++|.+=+|+.+
T Consensus 29 m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 29 MKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555688899999999999888843
No 17
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=79.70 E-value=33 Score=31.63 Aligned_cols=28 Identities=4% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhccc--HHHHHHHHHH
Q 013958 333 RVVIEQVCDELARDINDD--KSEVEELKRE 360 (433)
Q Consensus 333 RellE~vCdELAk~I~e~--kaEve~lKre 360 (433)
=.-.|+.|++++....+. +-+|..+-++
T Consensus 137 ~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 137 TKKLDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 344678899999998875 7888887765
No 18
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.42 E-value=18 Score=35.83 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 294 ERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 294 ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
..+..++.|.+-.++-.|...++.-....-.+.++.++....++.+-+|+-..|.+.++.+-.+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 5566666676777777777777777777777788888888888888899988888888887776655
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.03 E-value=37 Score=30.68 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhh
Q 013958 309 GKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQI 388 (433)
Q Consensus 309 ~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQM 388 (433)
..+++++...+.+...+|..|+..|.-.|..++.+-.++.+.-+-+ - ++=-.|+--| ----..++-
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL----------F---eEAN~MVa~a-r~~~~~~e~ 115 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL----------F---DEANNMVADA-RKEKYAIEI 115 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----------H---HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H---HHHHHHHHHH-HHHHHHHHH
Confidence 3456677777888888999999999999999998877776664422 1 2223343221 000122334
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHH
Q 013958 389 KLSEAKYQLEEKNAAVDKLRSQLEA 413 (433)
Q Consensus 389 KL~eAk~~leeK~s~ldkL~~elE~ 413 (433)
|...-+..+.+|...++.|..+|..
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777766643
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.87 E-value=1.5e+02 Score=37.72 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=16.1
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHHHHHH
Q 013958 340 CDELARDINDDKSEVEELKRESAIALEEVEK 370 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres~k~~eE~ee 370 (433)
-+++-..|..++++.++..+|.+++..|++.
T Consensus 2037 L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2037 ITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555443
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=77.74 E-value=6.3 Score=30.42 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR 345 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk 345 (433)
|..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555556666667789999999999998877644
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.34 E-value=55 Score=41.48 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhH
Q 013958 312 LAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESA 362 (433)
Q Consensus 312 LaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~ 362 (433)
|.+....+.+.|++++.+...-+--.+.+.+....+..-.+|+.+.|.+.+
T Consensus 1950 L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e 2000 (3245)
T 3vkg_A 1950 LDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY 2000 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555444443333333444444444444444444444443
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.04 E-value=35 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhHHHHHH--hhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 013958 254 DQSEISYLMKCFAEEKAA--WKNKEREVVEAAIESIAGELEVERKLRRRFES 303 (433)
Q Consensus 254 ~~~eie~l~KqlaEEk~~--wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 303 (433)
+..+|+.|.++|..=... .=--|-+.++.++++++...|.|-..|..+|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445566666665322111 11123455566666666666666666655543
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.60 E-value=55 Score=30.47 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHH
Q 013958 319 LLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEE 367 (433)
Q Consensus 319 ~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE 367 (433)
+....++++.-.+....+|+-=.++...|.+.++++..++........+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666665555555555544444333
No 25
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=70.59 E-value=65 Score=29.52 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhHHHHh-------HHHHHHHHHHHHHHHHH
Q 013958 276 EREVVEAAIESIAGELEVERKLRRRFESLN-------KKLGKELAETKHSLLKA 322 (433)
Q Consensus 276 E~eki~aai~slk~ELe~ERk~Rrr~E~ln-------~KL~~ELaE~K~s~~~a 322 (433)
..+.+..-+..|+..|+.||+.|.+.+-+. .-|--||..+|....++
T Consensus 63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666555422 23444555555544443
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.36 E-value=41 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-------cccHHHHHHHHHH
Q 013958 305 NKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDI-------NDDKSEVEELKRE 360 (433)
Q Consensus 305 n~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I-------~e~kaEve~lKre 360 (433)
|.+|.-|+-.++.++-.+-.-||.|-..|.-+|.-..-|-+.+ -+.++.|+.|+.|
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777888888888888887776555554444 4566666666544
No 27
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.63 E-value=49 Score=27.94 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHH--HHHHHHHHHHHHh--------HHHHHHhh
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE--VVEAAIESIAGEL--------EVERKLRR 299 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~e--ki~aai~slk~EL--------e~ERk~Rr 299 (433)
...|+.+|.++..+......|. ..|+..+.+|+..+..-|.+ +|..-|.+|-.-| -.+|+.|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~-------~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEV-------KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766654 34666677776665554333 2333333333332 35688999
Q ss_pred hHHHHhHHHHHHHHHH
Q 013958 300 RFESLNKKLGKELAET 315 (433)
Q Consensus 300 r~E~ln~KL~~ELaE~ 315 (433)
.+|.-|.+|...|.|.
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998874
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.59 E-value=91 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.028 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lKres~k~ 364 (433)
++..++....+|...++|-+.++.+...+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 66667777666666666666555554443
No 29
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.36 E-value=53 Score=27.98 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEE 356 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~ 356 (433)
-.+...-|..+++.|+.+-+.|+.+|.-|.+|..|..+... .|+.|+-.-.=.|+.|+.|...=.+.+..+..
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~-------qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL-------QVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667789999999999999999999999999877554 45557666666788888888776666666665
Q ss_pred HH
Q 013958 357 LK 358 (433)
Q Consensus 357 lK 358 (433)
|.
T Consensus 88 l~ 89 (129)
T 2fxo_A 88 MN 89 (129)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.93 E-value=35 Score=29.45 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 320 LKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 320 ~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
.=+-.|.+.||.+|+- ++-++.+++.+++.|.++
T Consensus 72 ~IY~~DF~aERadREk-------l~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 72 DIYKADFQAERHAREK-------LVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHH-------HHhHHHHHHHHHHHHHHH
Confidence 3355677888888873 344455555555555554
No 31
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=65.65 E-value=60 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=20.7
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013958 218 GQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQ 255 (433)
Q Consensus 218 ~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~ 255 (433)
|-.|-.+..+|-. =..-+..|+||+.|.+.++
T Consensus 79 G~~~~~pDPLsPg------E~~~~~Kl~eLE~e~k~d~ 110 (526)
T 3iyk_A 79 GSGEEIPDPLSPG------ERGIQAKLKELEDEQRNEL 110 (526)
T ss_pred ccCCCCCCCCCHh------HHHHHHHHHHHHHHHhhHH
Confidence 4555544444422 2468999999999987644
No 32
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=65.21 E-value=79 Score=28.52 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 013958 307 KLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 307 KL~~ELaE~K~s~~~alkelE~ 328 (433)
++.+++.++...+.++.+.|+.
T Consensus 126 ~~~~~~~~~~~~l~Kak~~Y~~ 147 (276)
T 2v0o_A 126 EAVQTIQSITQALQKSKENYNA 147 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544433
No 33
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=63.50 E-value=19 Score=28.27 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND 349 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e 349 (433)
|-.|+.+.+.-..+.-+=+|.|.++|.-||.+|-.+.+...|
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344555555566666666788888888888888888776543
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.86 E-value=44 Score=28.84 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHH
Q 013958 228 SLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKK 307 (433)
Q Consensus 228 Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 307 (433)
.+|-.|+.|++.-+..+..+..|.+.. |..| +..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql-------------------~~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV---VLQL-------------------KGHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998888643 3333 334445777777777777777777777
Q ss_pred HHHHHHHH
Q 013958 308 LGKELAET 315 (433)
Q Consensus 308 L~~ELaE~ 315 (433)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 35
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=59.57 E-value=69 Score=34.03 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=13.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958 265 FAEEKAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 265 laEEk~~wK~KE~eki~aai~slk~E 290 (433)
-+++.+.-+-+|.+.|+.++-.++..
T Consensus 388 ~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 388 HANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34444444445555565555555555
No 36
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.33 E-value=34 Score=35.94 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 013958 247 LIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDL 326 (433)
Q Consensus 247 L~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkel 326 (433)
....++.+--+|..+-.|-.|||.. |-.|++ -|..|+.+|..+|.--.-|-.-|...+..+.++-.+|
T Consensus 291 f~~~r~~d~~e~qqm~~~a~e~~~~-~~~e~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 291 YMRRRKPDTIDVQQMKAQAREEKLA-KQAQRE-----------KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHH-HHHHHT-----------TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777766666666643 333333 3555666666666666666666666666666666665
Q ss_pred HHHHH-HHHH------HHHHHHHHHhhhcccHHHHHHHHHHh
Q 013958 327 DTEKR-ARVV------IEQVCDELARDINDDKSEVEELKRES 361 (433)
Q Consensus 327 E~ERk-aRel------lE~vCdELAk~I~e~kaEve~lKres 361 (433)
++-.. ++.| .|+-...|.+.-.+.+++...|...+
T Consensus 359 ~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~ 400 (575)
T 2i1j_A 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400 (575)
T ss_dssp HHHHHC------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 2222 22233444444444444444444443
No 37
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=56.06 E-value=1.8e+02 Score=30.95 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHH------------HhHHHHHHH---HHHHHHHHHH
Q 013958 277 REVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKA------------VKDLDTEKR---ARVVIEQVCD 341 (433)
Q Consensus 277 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~a------------lkelE~ERk---aRellE~vCd 341 (433)
+.+...++++++.+|+. +|..|+.-+++++.-...+ +.-| +-++ .=..++..-|
T Consensus 344 ~~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~-~~~~~~~dv~~~~a~~d 412 (551)
T 2b5u_A 344 QAKAVQVYNSRKSELDA----------ANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGL-KAQRAQTDVNNKQAAFD 412 (551)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhhhhhhccChhhccchhhhhccc-hhhhhhhhhhhHHHHHH
Confidence 35666889999999954 8888888877654311000 0011 1112 1234577788
Q ss_pred HHHhhhcccHHHHHH
Q 013958 342 ELARDINDDKSEVEE 356 (433)
Q Consensus 342 ELAk~I~e~kaEve~ 356 (433)
++++++.++++++-.
T Consensus 413 ~~~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 413 AAAKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhh
Confidence 888888887776653
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.18 E-value=61 Score=28.78 Aligned_cols=88 Identities=22% Similarity=0.335 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhh
Q 013958 310 KELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIK 389 (433)
Q Consensus 310 ~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMK 389 (433)
.+|+.+..-+.+...+|..|+..|.-.|..++.+-.++.+.-+- + .++=-.|+--|-. --..++-|
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas----------L---FeEAN~MVa~ar~-~~~~~e~r 104 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS----------L---FDEANNLVADARM-EKYAIEIL 104 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH----------H---HHHHHHHHHHTTH-HHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H---HHHHHHHHHHHHH-HHHHHHHH
Confidence 45567777778888899999999999999998887776665442 2 1233344433310 01233444
Q ss_pred hhHhhhhhhhhhHHHHHHHHHH
Q 013958 390 LSEAKYQLEEKNAAVDKLRSQL 411 (433)
Q Consensus 390 L~eAk~~leeK~s~ldkL~~el 411 (433)
+...+.++.+|...++.++.+|
T Consensus 105 ~~~L~~ql~e~e~ll~~lq~QL 126 (135)
T 2e7s_A 105 NKRLTEQLREKDMLLDTLTLQL 126 (135)
T ss_dssp HHHHHHTTTHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666665555555544
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.75 E-value=1e+02 Score=26.06 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 013958 232 ALHAELERARLQVNQLIQEQ-------RSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFE 302 (433)
Q Consensus 232 aL~~EL~~Ar~~I~eL~~E~-------~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E 302 (433)
....+|...|.+|..+..++ ...+..++.|..++.+|-..+ ..+.+.|..++..++++==.|--+|
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHH
Confidence 34555666666665555554 445556677777777776543 3345566667777766544444333
No 40
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.65 E-value=1e+02 Score=26.15 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 291 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL 291 (433)
-+.+.+.|+-..+..|+.|..|-.+.+..-..|-..++|=. .+-..+...+.+.|..+..+|
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e-~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK-GRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888777766666666666433 233344455555555555554
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.98 E-value=1.4e+02 Score=27.62 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHH
Q 013958 337 EQVCDELARDINDDKSEVEELKRESAIALEEVE 369 (433)
Q Consensus 337 E~vCdELAk~I~e~kaEve~lKres~k~~eE~e 369 (433)
+...+++...+.+.++++..++.+......+++
T Consensus 124 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 124 SEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333333
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.81 E-value=1.1e+02 Score=25.98 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL 291 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL 291 (433)
-+.+-+.|+-..+..|+.|..|-.+.+.....|-..+++=.. +-..+-..+.+.|..+..+|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhH
Confidence 355667888888888888888888777777777777765432 33444455555565555555
No 43
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=51.74 E-value=1.6e+02 Score=27.85 Aligned_cols=126 Identities=22% Similarity=0.164 Sum_probs=66.1
Q ss_pred hchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHH-HHHH----HHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHH
Q 013958 204 TTSKELLKIINRMWGQEDRPSSSMSLVSALHAELER-ARLQ----VNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKERE 278 (433)
Q Consensus 204 ~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~-Ar~~----I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~e 278 (433)
.+|+||-.||-+|- -.-..|.++|+. .++= |.+|+.--..+.+-|....|++.-|- | .
T Consensus 68 ~~skeLG~vL~qis----------~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~---k----~ 130 (222)
T 3ok8_A 68 STSQILGEILVQMS----------DTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEY---R----H 130 (222)
T ss_dssp SSCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---H----H
T ss_pred CchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h----H
Confidence 35688999999985 334666666665 3333 45555555555556666666666552 2 2
Q ss_pred HHHHHHHHHHHHhHHH-HHHh----hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013958 279 VVEAAIESIAGELEVE-RKLR----RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDD 350 (433)
Q Consensus 279 ki~aai~slk~ELe~E-Rk~R----rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~ 350 (433)
+. +.+.-.+.||..= |+.. +-.|.++.+=..=-+=+..++..|| +|..||=+-|+|.-|- |++-+-.|
T Consensus 131 ~~-~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~el~~f~~~s~r~Al--~EErRRYcFL~ekhc~-~~~~~~~~ 203 (222)
T 3ok8_A 131 RA-ANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAE--LEEKRRYRFLAEKHLL-LSNTFLQF 203 (222)
T ss_dssp HH-HHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 22 2233334444322 2211 1144444332211111233344443 6788888999999995 55555444
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.70 E-value=1.2e+02 Score=32.44 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHhHHHHH
Q 013958 281 EAAIESIAGELEVERKLRRRFESLNKKLGK 310 (433)
Q Consensus 281 ~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 310 (433)
...|..|+.+|++=.+.++-++..-+-+-.
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E 92 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIME 92 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 444555666666556666666555444333
No 45
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.82 E-value=2.7e+02 Score=29.76 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=34.0
Q ss_pred HHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 013958 368 VEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQ 418 (433)
Q Consensus 368 ~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk 418 (433)
++-...|-||+- |--.|-|-.|-.++.+|.+=....+.-.++|-.-|.++
T Consensus 383 ~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 383 MAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 455689999977 88888887777766666554444555556666555554
No 46
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.50 E-value=1e+02 Score=32.64 Aligned_cols=93 Identities=11% Similarity=0.152 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH----hHHHHHHHHHhHHHH-HHhHhhhHHhhhhhhhHhhhh
Q 013958 322 AVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE----SAIALEEVEKEREMI-QVADVLREERAQIKLSEAKYQ 396 (433)
Q Consensus 322 alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre----s~k~~eE~eeER~ML-qmAEvWREERVQMKL~eAk~~ 396 (433)
.-|+++.|+..++.+|.-...|..-..+.++-++.-.+. ...+.+.||+||..+ +=-+.-.+.++|.+-.-.+..
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888876666655555443332 223444577777643 333444455555544445555
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 013958 397 LEEKNAAVDKLRSQLEAFSRN 417 (433)
Q Consensus 397 leeK~s~ldkL~~elE~FL~s 417 (433)
|.+|... |..||+.+=+.
T Consensus 565 ~~~~~~~---~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRI---MKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHh
Confidence 6666554 45555554333
No 47
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=48.77 E-value=52 Score=29.15 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh---HHHHHHh---hhhHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCF---AEEKAAW---KNKEREVVEAAIESIAGELEVERKLRRRFES 303 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql---aEEk~~w---K~KE~eki~aai~slk~ELe~ERk~Rrr~E~ 303 (433)
|.+|-.||..|+....+-+.++++.....-.+-+++ .-|.-.- -.=.-|+++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 567888999999999999999888776654443333 2222221 1223467777889999999888764 222
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHH
Q 013958 304 LNKKLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 304 ln~KL~~ELaE~K~s~~~alkelE~ 328 (433)
--+| |+..+.+..+..+||.+
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHH
Confidence 2333 45677888888888877
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.10 E-value=77 Score=29.78 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGE 290 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~E 290 (433)
-+..|..+|...+..+.+|...-....-+++.+.|....|+...+.---+++-..|-.+-+-
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDn 121 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDN 121 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35678888888888888888887777788888888888877555444444433333333333
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.70 E-value=2.4e+02 Score=28.97 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhHHHH
Q 013958 242 LQVNQLIQEQRSDQSEISYLMKCFAEEK 269 (433)
Q Consensus 242 ~~I~eL~~E~~s~~~eie~l~KqlaEEk 269 (433)
..|.+++++++...++.+..+-++++|-
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 3445555566665666666666666664
No 50
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=45.90 E-value=22 Score=28.51 Aligned_cols=42 Identities=33% Similarity=0.501 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
|--+..||+.+++.|+.|++|--..+-.|=||---||-||.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999999887777788887777776644
No 51
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=45.29 E-value=2.5e+02 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.037 Sum_probs=22.7
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013958 297 LRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRA 332 (433)
Q Consensus 297 ~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERka 332 (433)
.||..+.--.|+.++|.+.-..+.++.+.|+..-+.
T Consensus 130 erK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 130 ETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666677777776666666666666554433
No 52
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.66 E-value=1.6e+02 Score=24.79 Aligned_cols=75 Identities=23% Similarity=0.139 Sum_probs=42.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 013958 266 AEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELAR 345 (433)
Q Consensus 266 aEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk 345 (433)
+|+.++-|..+-++++..|.-.+..++.=-=+ +.-+.=+-.|.+.||.+|+- ++.
T Consensus 14 aEeaL~~kq~~id~lke~~~q~~~~~E~i~vL------------------k~Qv~IY~~DF~aERadREk-------l~~ 68 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQHKIVMETVPVL------------------KAQADIYKADFQAERHAREK-------LVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH-------HHh
Confidence 56666665555555555444444443221112 22233355689999999984 456
Q ss_pred hhcccHHHHHHHHHHhHHHH
Q 013958 346 DINDDKSEVEELKRESAIAL 365 (433)
Q Consensus 346 ~I~e~kaEve~lKres~k~~ 365 (433)
++.++...++.|.++..++-
T Consensus 69 eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp TTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777655443
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.37 E-value=2.1e+02 Score=25.86 Aligned_cols=80 Identities=26% Similarity=0.208 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKL 308 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 308 (433)
+||.++++++ .|..|..|....+.+|..+--- ..=|+|--+.+.+.+.++.-++..=-.-.++++.-|..|
T Consensus 59 ~vs~~~~~~~----~I~~L~~El~~l~~ki~dLeee-----l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLN----TLAILQKELKSKEQEIRRLKEV-----IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544433 4555555555444444333211 222456677788888888888776666666777778777
Q ss_pred HHHHHHHHH
Q 013958 309 GKELAETKH 317 (433)
Q Consensus 309 ~~ELaE~K~ 317 (433)
+.=+-.-|.
T Consensus 130 V~RWM~rk~ 138 (152)
T 3a7p_A 130 VARWLKKTE 138 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 765554333
No 54
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.54 E-value=1.9e+02 Score=25.13 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIA 364 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~ 364 (433)
+.+||-..+.--..++.....+.+|+.+.|.-+..+--.+| ++-+++.+++.++.+|..+..++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e--------------~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE--------------SSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667666666666666666677777776665555444433 33344445555555555554444
No 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.25 E-value=67 Score=32.50 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIA 288 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk 288 (433)
...|..||+..+.++++|+++.+....+++.+-.++.++- .++.++...|++++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-----~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN-----MERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhC
Confidence 3578999999999999998888766666666655544432 23334444444444
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.40 E-value=1.5e+02 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 013958 230 VSALHAELERARLQVNQLIQEQRS 253 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s 253 (433)
+.+|+.|++.|..++.++......
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~ 31 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKA 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999988888776653
No 57
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=33.11 E-value=2.8e+02 Score=25.24 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhh----------hc-ccHHHHHHHHHHhHHHHHHHHHhH
Q 013958 322 AVKDLDTEKRARVVIEQVCDELARD----------IN-DDKSEVEELKRESAIALEEVEKER 372 (433)
Q Consensus 322 alkelE~ERkaRellE~vCdELAk~----------I~-e~kaEve~lKres~k~~eE~eeER 372 (433)
.+.++. .|+.-++++.++.=+--. +. +.+.-+..|..+..+++.+.++++
T Consensus 184 ~l~~l~-~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~ 244 (265)
T 2q12_A 184 ALNTLQ-YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDI 244 (265)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455 366778888886532211 12 344445555555555555554444
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.28 E-value=3.7e+02 Score=26.32 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=18.5
Q ss_pred hhcccHHHHHHHHHHhHHHHHHHHHhH
Q 013958 346 DINDDKSEVEELKRESAIALEEVEKER 372 (433)
Q Consensus 346 ~I~e~kaEve~lKres~k~~eE~eeER 372 (433)
.|.|.+.||-.|.++....+.|+++-|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777777777776666665543
No 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.98 E-value=1e+02 Score=30.95 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 013958 230 VSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEE 268 (433)
Q Consensus 230 v~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 268 (433)
|.+|+.||...+..+.+|+++-...+.+++.+-.++.+|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666655555555444444433
No 60
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.50 E-value=2e+02 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.2
Q ss_pred HHHHHhhhcccHHHHHHHHHHhHHHHH
Q 013958 340 CDELARDINDDKSEVEELKRESAIALE 366 (433)
Q Consensus 340 CdELAk~I~e~kaEve~lKres~k~~e 366 (433)
..++-..|.+..+||+.|+.+...++.
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344467788999999999988776543
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.68 E-value=1.9e+02 Score=30.15 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 207 KELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 207 ~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
.+|=..|..| +..-.+.--+|.+|+..|...+.+|.+++.--..+..+++...+.+.
T Consensus 103 qeLe~~l~~l---sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 103 RDLKDRVAKF---SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4555555554 11122333478889999999988888888766666666665555553
No 62
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.55 E-value=2.2e+02 Score=22.83 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 013958 279 VVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEEL 357 (433)
Q Consensus 279 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~l 357 (433)
....-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..+..|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999999999999887664443 2335677777777666666665554
No 63
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.76 E-value=3e+02 Score=24.11 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
.-|+.+|-+|+.-..+-+.+--+-.+-+..|+.-|.+||+.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888877777778888999888888754
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.32 E-value=1.8e+02 Score=25.31 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 013958 398 EEKNAAVDKLRSQLEAFSR 416 (433)
Q Consensus 398 eeK~s~ldkL~~elE~FL~ 416 (433)
.+++..+.+=..+||+=|.
T Consensus 116 ~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 116 KSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555565544
No 65
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.23 E-value=86 Score=26.82 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 013958 227 MSLVSALHAELERARLQVNQLIQEQRSDQSEIS 259 (433)
Q Consensus 227 ~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie 259 (433)
++-+.||..||..++..|.+|.++-...+-.++
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve 35 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVS 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999988877654443333
No 66
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.83 E-value=1.2e+02 Score=23.66 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.5
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELA 313 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELa 313 (433)
++.=|+.|.+.|+++|.+=+|+.+...
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555588999999999999999987654
No 67
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.65 E-value=3.2e+02 Score=23.74 Aligned_cols=38 Identities=11% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 013958 286 SIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTE 329 (433)
Q Consensus 286 slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~E 329 (433)
-|+.|+|.| +|.+.+|.-.-|-|+.+++.+-.++++.-
T Consensus 61 qLkse~e~E------~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 61 ILKAELERK------MAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666665 78888888888888888877766666654
No 68
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=26.63 E-value=4.5e+02 Score=27.19 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhh
Q 013958 334 VVIEQVCDELARDI 347 (433)
Q Consensus 334 ellE~vCdELAk~I 347 (433)
+-+++.|+++-.-+
T Consensus 563 ~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 563 TAIESALTALETAL 576 (605)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555444433
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.47 E-value=4.6e+02 Score=25.61 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhcccHHHHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lK 358 (433)
+|.-..+|-.+|.+.+++|+++|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455566667777777665
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.92 E-value=1.1e+02 Score=25.78 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHh-------------hhhhhhHhhhhhhhhhHHHHHHHHHHH
Q 013958 346 DINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREER-------------AQIKLSEAKYQLEEKNAAVDKLRSQLE 412 (433)
Q Consensus 346 ~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREER-------------VQMKL~eAk~~leeK~s~ldkL~~elE 412 (433)
++...+.+|+.|.+|..+++++.+ +-|.|.|-| |.|...=|-.+.+..-..+++|+.|+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~-------~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR-------MLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 013958 413 A 413 (433)
Q Consensus 413 ~ 413 (433)
.
T Consensus 86 r 86 (100)
T 1go4_E 86 R 86 (100)
T ss_dssp H
T ss_pred H
No 71
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=25.84 E-value=4.8e+02 Score=25.63 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 013958 331 RARVVIEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 331 kaRellE~vCdELAk~I~e~kaEve~lK 358 (433)
|++.-++..+.++.+-=.+|..-|....
T Consensus 168 K~~~k~~k~~~~~~~a~neY~~~l~~~N 195 (406)
T 4dyl_A 168 KAKDKYVRSLWKLFAHHNRYVLGVRAAQ 195 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666667776666554
No 72
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.24 E-value=77 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 013958 226 SMSLVSALHAELERARLQVNQLIQEQRSDQSE 257 (433)
Q Consensus 226 ~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~e 257 (433)
+.+=|-+|+.|++.-+.+|.+|..+....+.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999999999887654443
No 73
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.16 E-value=3.7e+02 Score=28.39 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=34.6
Q ss_pred CCCCCCCCcccccccc-cccccchhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 013958 181 RAQTPSGSTVGVKTRL-KDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEIS 259 (433)
Q Consensus 181 ~~~tp~~ss~~~k~rl-k~~~~~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie 259 (433)
+..||++|- .++-| +...+..+...+|-.-|..+ ...+.+.-+++..|..- +++++...++.+
T Consensus 43 GvkCPSGCr--LqglL~kqerdv~~rI~kLkn~L~~~---s~s~~~s~~y~~~~~~~-----------lk~~~~q~~dnd 106 (491)
T 1m1j_A 43 GTKCPSGCR--MQGIIDDTDQNYSQRIDNIRQQLADS---QNKYKTSNRVIVETINI-----------LKPGLEGAQQLD 106 (491)
T ss_dssp TTEECCSTT--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred cCCCCCccc--hhhHHHHhhhhHHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHH-----------HHHHHhhhccch
Confidence 356999982 22222 33333334444444444443 22233444555555444 444444444555
Q ss_pred HHHHHhHHHH
Q 013958 260 YLMKCFAEEK 269 (433)
Q Consensus 260 ~l~KqlaEEk 269 (433)
...-++++|-
T Consensus 107 n~~~e~S~eL 116 (491)
T 1m1j_A 107 ENYGHVSTEL 116 (491)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555553
No 74
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=23.76 E-value=3.2e+02 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhH
Q 013958 237 LERARLQVNQLIQEQRSDQSEISYLMKCFA 266 (433)
Q Consensus 237 L~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 266 (433)
|--.-.-|+.|.+|..+|++|++..-.++.
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~rie 38 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKIE 38 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888888766554443
No 75
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=23.08 E-value=4.8e+02 Score=24.61 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=83.2
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHH------HHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 013958 210 LKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQL------IQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAA 283 (433)
Q Consensus 210 lkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL------~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aa 283 (433)
++-.|=.| ++--...-.+.+||++=...+.+=+.-| -..-++. ++|-..+-++++--..-.++-.+-..+.
T Consensus 24 m~~~~P~~--e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs-~elG~~L~~i~~~~r~ie~~l~~~~~~~ 100 (253)
T 2ykt_A 24 MEQFNPSL--RNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGS-KELGDVLFQMAEVHRQIQNQLEEMLKSF 100 (253)
T ss_dssp HHTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455 4433344456677776666555444333 3333444 6788888887776544444445445555
Q ss_pred ----HHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHhhhcccHHH
Q 013958 284 ----IESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV------VIEQVCDELARDINDDKSE 353 (433)
Q Consensus 284 ----i~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRe------llE~vCdELAk~I~e~kaE 353 (433)
|..|+..+|.-.|. +-.+.++..+|......++.++..|+-+-+|.+. ..++.-++....|.+.+.+
T Consensus 101 ~~~li~pL~~kie~d~K~---v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~ 177 (253)
T 2ykt_A 101 HNELLTQLEQKVELDSRY---LSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGE 177 (253)
T ss_dssp HTTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 66666666655543 3445567777877777888888777666665432 1123334444555556666
Q ss_pred HHHHHHHhH
Q 013958 354 VEELKRESA 362 (433)
Q Consensus 354 ve~lKres~ 362 (433)
++..-.++.
T Consensus 178 le~~~~~~l 186 (253)
T 2ykt_A 178 LENYVSDGY 186 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 76
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.89 E-value=6.9e+02 Score=26.40 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013958 255 QSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARV 334 (433)
Q Consensus 255 ~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRe 334 (433)
+.+++.-+.++..|. .+.|..+|...-++.+.| ++.||-..+..++.++.+++.+.+......+
T Consensus 598 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 661 (695)
T 2j69_A 598 KKELVKHLPQVAHEQ-------SQVVYNAVKECFDSYERE---------VSKRINDDIVSRKSELDNLVKQKQTREINRE 661 (695)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 556666666666665 455555555555555443 5667777888888888888777766555444
Q ss_pred HHHHHHHH
Q 013958 335 VIEQVCDE 342 (433)
Q Consensus 335 llE~vCdE 342 (433)
..-+-++-
T Consensus 662 ~~~~~l~~ 669 (695)
T 2j69_A 662 SEFNRLKN 669 (695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 43333333
No 77
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.62 E-value=1.8e+02 Score=21.77 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 013958 302 ESLNKKLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 302 E~ln~KL~~ELaE~K~s~~~alkelE~ 328 (433)
-.-|.||+..|.+++.-+.+.-.++|+
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888777666655555443
No 78
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.37 E-value=4.2e+02 Score=23.65 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 013958 247 LIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDL 326 (433)
Q Consensus 247 L~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkel 326 (433)
+..+-.....+++.|-..|..||..||.-=..-+..+++ |+..=..-| -|...|-| ||
T Consensus 59 v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vce--------EQqfl~~Qe----dL~~DL~e----------DL 116 (141)
T 3okq_A 59 VSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCE--------EQQFLTLQE----ELILDLKE----------DL 116 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH----HHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH--------HHHHHHHHH----HHHHHHHH----------HH
Confidence 333333444445555566778999999743333222222 333322333 34444443 56
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013958 327 DTEKRARVVIEQVCDELARD 346 (433)
Q Consensus 327 E~ERkaRellE~vCdELAk~ 346 (433)
++--..=.++|..|.|-.+.
T Consensus 117 ~ka~etf~lVeq~~~eq~k~ 136 (141)
T 3okq_A 117 GKALETFDLIKLCCEEQEKN 136 (141)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66666677888888876654
No 79
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.73 E-value=5.2e+02 Score=24.54 Aligned_cols=174 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHh-----HHHHHHhh
Q 013958 229 LVSALHAELERARLQV----NQLIQEQRSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGEL-----EVERKLRR 299 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I----~eL~~E~~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~EL-----e~ERk~Rr 299 (433)
|-..|...++..|+++ .+|..--..+=.++...+--++++- +++|...++.|++-| +.--++..
T Consensus 82 l~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eel-------r~k~~~~leeLr~~l~P~ae~~~~kl~~ 154 (273)
T 3s84_A 82 MERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEF-------KVKIDQTVEELRRSLAPYAQDTQEKLNH 154 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHH--------HHHHHHhHHHHHHHHHh
Q 013958 300 RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEV--------EELKRESAIALEEVEKE 371 (433)
Q Consensus 300 r~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEv--------e~lKres~k~~eE~eeE 371 (433)
+++.|..+|.+-..+.+..+...+.+| |.-|+-...+|-..+...-.++ ..|++..+..+.-++--
T Consensus 155 ~~e~L~~ql~~~a~~L~~~l~~~~eeL------r~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~ 228 (273)
T 3s84_A 155 QLEGLTFQMKKNAEELKARISASAEEL------RQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPY 228 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhh
Q ss_pred HHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHH-HHHHHHHHHH
Q 013958 372 REMIQVADVLREERAQIKLSEAKYQLEEKNAAVD-KLRSQLEAFS 415 (433)
Q Consensus 372 R~MLqmAEvWREERVQMKL~eAk~~leeK~s~ld-kL~~elE~FL 415 (433)
=.-++=+=+-..|-||-||.=-=.+++++.+.++ .|+.-+-+|+
T Consensus 229 ~e~~~~~l~~~~e~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 273 (273)
T 3s84_A 229 GENFNKALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLRDKVNSFF 273 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHhhhhHHHHHHHHHhhccC
No 80
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.46 E-value=65 Score=22.54 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhcccHHHHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lK 358 (433)
||+=++||-.+-.+.++||..||
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 56667777777777777777766
No 81
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.08 E-value=3.8e+02 Score=22.69 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHHHH
Q 013958 231 SALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKAA 271 (433)
Q Consensus 231 ~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk~~ 271 (433)
.-|+.+|-+|+.-..+-+.+--.-.+-+..|+--|..||+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999888888888888888899999999988865
No 82
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.42 E-value=3.5e+02 Score=22.05 Aligned_cols=65 Identities=25% Similarity=0.364 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHH-HHhHHHHHHhH
Q 013958 308 LGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEV-EKEREMIQVAD 379 (433)
Q Consensus 308 L~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKres~k~~eE~-eeER~MLqmAE 379 (433)
|-.+|.+++..=..++++|+. +|.-..+++.+|...++|.+.|..+-.+.|.+. ...+.++..-+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~-------lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELED-------VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444432 444456788888889999998888877776653 34555554443
No 83
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.39 E-value=1.5e+02 Score=30.47 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=40.5
Q ss_pred cccccccchhchHHHHHHHHhhcCCCCCCCcc------------hhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 013958 195 RLKDVSNALTTSKELLKIINRMWGQEDRPSSS------------MSLVSALHAELERARLQVNQLIQEQRSDQSEISYLM 262 (433)
Q Consensus 195 rlk~~~~~L~TS~ELlkvlnriw~leeq~~s~------------~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~ 262 (433)
.|.+.++.-.+..++++.|..+|...+.+..+ +.-+..|..=|......|.+|..--.++...|..|.
T Consensus 46 ~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~ 125 (411)
T 3ghg_C 46 ILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 125 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778899999999999555544433 223333433344445555555555444444444443
Q ss_pred HHh
Q 013958 263 KCF 265 (433)
Q Consensus 263 Kql 265 (433)
..+
T Consensus 126 ~~v 128 (411)
T 3ghg_C 126 EKV 128 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 84
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.31 E-value=8.2e+02 Score=26.25 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=36.1
Q ss_pred hhchHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhH
Q 013958 252 RSDQSEISYLMKCFAEEKAAWKNKEREVVEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKD 325 (433)
Q Consensus 252 ~s~~~eie~l~KqlaEEk~~wK~KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alke 325 (433)
+.+.++++.+++++-|. |+.+... ..-.+....|+.+| ||++.+.|..++-.-|.. ..+|.+.|.+
T Consensus 77 sKnsKdseqy~k~~~E~---Lr~rq~q--~~dNdNtynE~S~E--LRRrIqyLKekVdnQlsn-IrvLQsnLed 142 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEI---LRGDFSS--ANNRDNTYNRVSED--LRSRIEVLKRKVIEKVQH-IQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHT---TSSHHHH--HHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HhhchhHHHHHHHHHHH---HHHHHHh--hhccchhHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44456677777666654 3322221 11444455555543 678888888888777633 3444444333
No 85
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.28 E-value=71 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhcccHHHHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELK 358 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lK 358 (433)
||+=|.||-.+-.+.+.||+.||
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 57777778777777777777766
No 86
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.10 E-value=3.9e+02 Score=22.48 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 013958 285 ESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRE 360 (433)
Q Consensus 285 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve~lKre 360 (433)
..|...|..|+-+-.-+|-...+|...-.+...-+.-+-..+|. .|+.+++|...-...+.++..|+..
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776667777666666544444444443333333 3444555555555555555555543
Done!