Query 013958
Match_columns 433
No_of_seqs 93 out of 109
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 02:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 68.0 13 0.00094 29.8 8.9 30 296-325 71-100 (144)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 41.6 14 0.00098 27.6 4.1 39 229-267 27-65 (67)
3 d2efla1 a.238.1.4 (A:1-288) Fo 36.1 1.1E+02 0.0077 25.0 23.3 42 287-328 102-143 (288)
4 d1h7ca_ a.7.5.1 (A:) Tubulin c 27.6 1E+02 0.0076 23.8 7.6 74 336-418 9-82 (103)
5 d2efka1 a.238.1.4 (A:10-288) C 20.2 2.1E+02 0.015 23.1 24.9 11 409-419 254-264 (279)
6 d2p90a1 c.56.8.1 (A:6-274) Hyp 20.0 1.3E+02 0.0092 25.7 7.4 57 202-269 205-261 (269)
7 d1gs9a_ a.24.1.1 (A:) Apolipop 19.9 64 0.0047 25.3 5.0 55 299-355 63-117 (144)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 19.8 55 0.004 24.7 4.4 32 229-260 9-40 (107)
9 d1j1ja_ a.118.16.1 (A:) Transl 19.6 2.3E+02 0.017 23.5 9.9 71 280-350 3-82 (217)
10 d1q08a_ a.6.1.3 (A:) Transcrip 18.9 1.7E+02 0.012 21.5 7.1 61 368-428 19-82 (94)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=68.00 E-value=13 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHHHHhH
Q 013958 296 KLRRRFESLNKKLGKELAETKHSLLKAVKD 325 (433)
Q Consensus 296 k~Rrr~E~ln~KL~~ELaE~K~s~~~alke 325 (433)
++.+.+|.+-.+|..++.|++.-+...+.+
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~ee 100 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGE 100 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777766655554433
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.65 E-value=14 Score=27.60 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAE 267 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 267 (433)
-|-.+..||+++++.|+.|+++--..+-.+-||---||-
T Consensus 27 sV~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA~ 65 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAK 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999999999999999987666666666555553
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.13 E-value=1.1e+02 Score=25.01 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 013958 287 IAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDT 328 (433)
Q Consensus 287 lk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~alkelE~ 328 (433)
+..-+.+-++.|+.+...-.++.+++......+.++.+.|..
T Consensus 102 l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~ 143 (288)
T d2efla1 102 LARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFER 143 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555555555555555555543
No 4
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.58 E-value=1e+02 Score=23.82 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhHHHHHHHHHhHHHHHHhHhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 013958 336 IEQVCDELARDINDDKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFS 415 (433)
Q Consensus 336 lE~vCdELAk~I~e~kaEve~lKres~k~~eE~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL 415 (433)
--.+|..|.++..-|+.|+..-.....++..+-..|..+=+--+|.- |.+.-+-+=..-|.....+|+.||
T Consensus 9 ktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~~~~dey~iKkq~~vl~---------Es~~mipd~~~Rl~~a~~~L~~~l 79 (103)
T d1h7ca_ 9 KTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQ---------ESRMMIPDCQRRLEAAYLDLQRIL 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHH---------HHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777776666655434444444333332 222233333344555667788888
Q ss_pred hhh
Q 013958 416 RNQ 418 (433)
Q Consensus 416 ~sk 418 (433)
.+-
T Consensus 80 ~~e 82 (103)
T d1h7ca_ 80 ENE 82 (103)
T ss_dssp HHC
T ss_pred HHC
Confidence 753
No 5
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.19 E-value=2.1e+02 Score=23.05 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=7.5
Q ss_pred HHHHHHHhhhc
Q 013958 409 SQLEAFSRNQK 419 (433)
Q Consensus 409 ~elE~FL~sk~ 419 (433)
.|++.|+...+
T Consensus 254 ~D~~~f~~~~~ 264 (279)
T d2efka1 254 NDSHVLIELHK 264 (279)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHcC
Confidence 67777877644
No 6
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=19.96 E-value=1.3e+02 Score=25.75 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=43.0
Q ss_pred chhchHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhHHHH
Q 013958 202 ALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEK 269 (433)
Q Consensus 202 ~L~TS~ELlkvlnriw~leeq~~s~~Slv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEk 269 (433)
+-+++..|+.+|+.+.+++=. ++.|..+-+..+.+|++|+.+- .|+..++.+|.+.-
T Consensus 205 dP~AA~~lL~~l~~~~gl~id-------~~~L~e~Ae~~e~~i~~l~e~~----~e~~~~v~~LE~~y 261 (269)
T d2p90a1 205 YPAATLKLLQSIADSADLNLP-------LLALERDAEKVHRQLMEQTEES----SEIQRVVGALEQQY 261 (269)
T ss_dssp CHHHHHHHHHHHHHHHTCCCC-------CHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCC-------hHHHHHHHHHHHHHHHHHHhhC----HHHHHHHHHHHHhH
Confidence 457889999999999876522 4778888888999999998875 45666666665553
No 7
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=19.92 E-value=64 Score=25.35 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=29.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 013958 299 RRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVE 355 (433)
Q Consensus 299 rr~E~ln~KL~~ELaE~K~s~~~alkelE~ERkaRellE~vCdELAk~I~e~kaEve 355 (433)
.-++.+..+|..++.+++..+...+.++... --..+++|-..+...+.+++..+.
T Consensus 63 p~~~e~~~~l~~~~e~lr~~l~~~lee~r~k--l~~~~eel~~~~~~~~ee~r~~l~ 117 (144)
T d1gs9a_ 63 PVAEETRARLSKELQAAQARLGADMEDVRGR--LVQYRGEVQAMLGQSTEELRVRLA 117 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776666665322 122233333333333445555544
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.81 E-value=55 Score=24.75 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 013958 229 LVSALHAELERARLQVNQLIQEQRSDQSEISY 260 (433)
Q Consensus 229 lv~aL~~EL~~Ar~~I~eL~~E~~s~~~eie~ 260 (433)
-+..|+.+|.....++.+|..+..-...-++.
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999998887755444443
No 9
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.64 E-value=2.3e+02 Score=23.48 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHhHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013958 280 VEAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLK---------AVKDLDTEKRARVVIEQVCDELARDINDD 350 (433)
Q Consensus 280 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELaE~K~s~~~---------alkelE~ERkaRellE~vCdELAk~I~e~ 350 (433)
+.++..+++++|+.+-..|.++-.+-+.+...-..+-.++.+ .-..++.-+..=.-+.+...+||..+...
T Consensus 3 ~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~l~~~~~~~ 82 (217)
T d1j1ja_ 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKFPAE 82 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHcccC
No 10
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=18.93 E-value=1.7e+02 Score=21.48 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHhHHHHHHh---HhhhHHhhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhccCcccchhh
Q 013958 368 VEKEREMIQVA---DVLREERAQIKLSEAKYQLEEKNAAVDKLRSQLEAFSRNQKGKRKRTQFC 428 (433)
Q Consensus 368 ~eeER~MLqmA---EvWREERVQMKL~eAk~~leeK~s~ldkL~~elE~FL~sk~~~~~~~~~~ 428 (433)
++|=+.+|.+- ...--.-|+--+.+=-..+++|.+.|..|+.+|+.+...-.+.......|
T Consensus 19 L~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~c~~~~~~~~~C 82 (94)
T d1q08a_ 19 LESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYC 82 (94)
T ss_dssp HHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGC
T ss_pred HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcC
Done!