BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013959
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 188/363 (51%), Gaps = 28/363 (7%)
Query: 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
D T YTG G A + L Y++ G+ L L+ + + + + R +TFLCG G A
Sbjct: 70 DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLA 127
Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
+ AV+ ++M + + + + + + + P P E +LYGR G+++A LFV
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLIHL--NKIDPHAPNE--------MLYGRIGYIYALLFV 177
Query: 198 NKHLGAGTLPNELLMPIVDAVLXX---XXXXXXXXXXCPLMYRWHGTRYWGAANGLAGIL 254
NK+ G +P + I + +L PLMY W+ Y GAA+GLAGI
Sbjct: 178 NKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIY 237
Query: 255 QVLLHFPLSEEDAED---VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAI 311
L+ L + VK ++ Y+ +FP SGNYP G+ RD LV W HGA GV
Sbjct: 238 YYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGNYPPCIGDNRDLLVHWCHGAPGVIY 296
Query: 312 TLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLYRLTGE 370
L +A +V F ++ DA + +V+W+ GL+KK GL G+AGNAYAFL+LY LT +
Sbjct: 297 MLIQAYKV--FREEKYLCDA-YQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD 353
Query: 371 TIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPG 430
Y+ RA F+ + ++ R D +SLF+G+AGT DLL P ARFP
Sbjct: 354 MKYLYRACKFAEWCLEYGEH-----GCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPA 408
Query: 431 YEL 433
+EL
Sbjct: 409 FEL 411
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 237 RWHGTRYWGAANGLAGILQVLLHFPLSEEDAE-DVKGTLRYMMSNRFPQSGN--YPVSEG 293
RW G G +G+AG+ +V L E+ + V G + NRF G YP+ +
Sbjct: 183 RWTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQVAGVNHGIWLNRFRYRGEDAYPLLDE 242
Query: 294 NPRDKLVQWS 303
KL +W
Sbjct: 243 WIEKKLPEWE 252
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 30/118 (25%)
Query: 275 RYMMSNRFPQSGNYPVSE----GNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRD 330
RYM + FP Y V E G+P+ + + HGA L + + V V P+ EF
Sbjct: 416 RYMHNYNFPP---YSVGETGRVGSPKRR--EIGHGA------LAERAIVPVLPTREEFPY 464
Query: 331 AAIEAGEVLWKNG--------------LVKKVGLADGAAGNAYAFLSLYRLTGETIYV 374
A + E L NG L V L AG A +S + GET YV
Sbjct: 465 AIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLIS-QEINGETHYV 521
>pdb|1KSA|A Chain A, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|1KSA|B Chain B, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|3BSD|A Chain A, Light Harvesting Protein From Rc Of Chlorobium Tepidum
Length = 366
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 301 QWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAG 336
++SHG +G+ ++ + +++ FPSD+ R A +EAG
Sbjct: 224 RFSHGGSGMVDSISRWAEL--FPSDKLNRPAQVEAG 257
>pdb|3ENI|A Chain A, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
pdb|3ENI|C Chain C, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
Length = 365
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 301 QWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAG 336
++SHG +G+ ++ + +++ FPSD+ R A +EAG
Sbjct: 223 RFSHGGSGMVDSISRWAEL--FPSDKLNRPAQVEAG 256
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 131 GRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPA 170
G+G A A +MGD R D F F++I + PA
Sbjct: 275 GKGSAVASVVSKAAKMGDFLRNDMFDKYFMKIGAQDKTPA 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,586,728
Number of Sequences: 62578
Number of extensions: 491404
Number of successful extensions: 859
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 10
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)