Query 013959
Match_columns 433
No_of_seqs 200 out of 660
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 00:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 1E-66 2.3E-71 478.9 30.9 371 38-433 28-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 1.8E-53 3.8E-58 422.1 32.0 333 82-429 1-343 (343)
3 COG4403 LcnDR2 Lantibiotic mod 100.0 6.3E-46 1.4E-50 381.0 25.9 349 38-425 589-955 (963)
4 PF05147 LANC_like: Lanthionin 100.0 2.3E-47 4.9E-52 380.0 13.2 345 75-431 1-353 (355)
5 cd04792 LanM-like LanM-like pr 100.0 2.8E-44 6E-49 394.5 35.0 347 61-430 467-823 (825)
6 cd04793 LanC LanC is the cycla 100.0 3.6E-43 7.7E-48 353.5 27.2 336 82-424 1-373 (382)
7 cd04434 LanC_like LanC-like pr 100.0 2.3E-42 5.1E-47 341.7 32.4 326 82-423 1-336 (343)
8 cd04791 LanC_SerThrkinase Lant 100.0 1.4E-39 3E-44 320.0 24.5 315 82-430 1-321 (321)
9 cd04794 euk_LANCL eukaryotic L 99.9 8.2E-25 1.8E-29 217.0 20.8 261 129-425 1-287 (343)
10 cd04434 LanC_like LanC-like pr 99.9 7.7E-24 1.7E-28 209.3 26.5 291 44-367 20-336 (343)
11 cd04792 LanM-like LanM-like pr 99.9 3.2E-23 6.9E-28 228.1 25.1 289 43-367 508-818 (825)
12 cd04791 LanC_SerThrkinase Lant 99.9 1.9E-22 4E-27 198.3 21.9 254 77-366 38-313 (321)
13 cd04793 LanC LanC is the cycla 99.9 3.1E-20 6.8E-25 187.0 23.3 299 43-368 19-373 (382)
14 PF05147 LANC_like: Lanthionin 99.8 1.3E-19 2.8E-24 180.3 12.2 291 43-368 26-346 (355)
15 COG4403 LcnDR2 Lantibiotic mod 99.8 9E-18 2E-22 174.2 20.9 280 43-371 664-957 (963)
16 KOG2787 Lanthionine synthetase 99.5 4.6E-13 1E-17 124.9 18.8 260 123-422 60-340 (403)
17 COG4225 Predicted unsaturated 97.0 0.068 1.5E-06 51.7 17.5 246 92-355 45-323 (357)
18 PF07470 Glyco_hydro_88: Glyco 96.2 1.4 3.1E-05 43.4 23.3 240 91-342 33-287 (336)
19 cd00249 AGE AGE domain; N-acyl 95.7 2.6 5.7E-05 42.2 23.2 258 78-344 49-339 (384)
20 COG1331 Highly conserved prote 95.5 1.9 4.1E-05 45.9 19.7 240 78-339 269-567 (667)
21 PF07470 Glyco_hydro_88: Glyco 95.3 3.1 6.7E-05 41.0 20.2 215 43-280 42-287 (336)
22 COG4225 Predicted unsaturated 95.1 0.61 1.3E-05 45.3 13.6 185 90-283 86-306 (357)
23 PF07944 DUF1680: Putative gly 95.1 0.29 6.2E-06 51.6 12.5 129 248-383 64-206 (520)
24 cd00249 AGE AGE domain; N-acyl 94.6 0.39 8.4E-06 48.2 11.8 138 248-388 53-209 (384)
25 COG1331 Highly conserved prote 93.4 3.3 7.2E-05 44.1 15.8 130 77-207 404-557 (667)
26 TIGR02474 pec_lyase pectate ly 93.3 0.73 1.6E-05 44.3 10.0 134 250-386 46-217 (290)
27 PF07944 DUF1680: Putative gly 93.0 8.3 0.00018 40.6 18.5 228 85-337 66-332 (520)
28 PF09492 Pec_lyase: Pectic aci 91.8 0.41 8.9E-06 45.9 6.3 130 251-385 42-211 (289)
29 PF07221 GlcNAc_2-epim: N-acyl 91.0 0.66 1.4E-05 46.0 7.2 122 263-388 38-175 (346)
30 PF03663 Glyco_hydro_76: Glyco 89.1 10 0.00022 38.1 13.9 185 190-385 93-317 (370)
31 COG3533 Uncharacterized protei 87.9 1.1 2.3E-05 45.9 5.7 62 45-116 150-211 (589)
32 PF03663 Glyco_hydro_76: Glyco 87.8 1 2.3E-05 45.2 5.8 117 265-388 113-257 (370)
33 COG3533 Uncharacterized protei 85.6 8.9 0.00019 39.4 10.8 135 244-383 66-209 (589)
34 TIGR02474 pec_lyase pectate ly 85.3 21 0.00045 34.4 12.8 147 186-342 45-218 (290)
35 KOG2429 Glycosyl hydrolase, fa 82.0 6.2 0.00013 40.9 8.1 116 43-158 149-286 (622)
36 PLN02993 lupeol synthase 81.2 28 0.00061 38.3 13.3 84 245-341 561-650 (763)
37 PF13243 Prenyltrans_1: Prenyl 77.4 2.3 5E-05 34.1 3.0 58 270-342 1-58 (109)
38 PTZ00470 glycoside hydrolase f 76.3 48 0.001 34.9 12.9 73 44-117 173-256 (522)
39 PLN02993 lupeol synthase 74.6 39 0.00083 37.3 12.0 99 181-290 560-660 (763)
40 PF09492 Pec_lyase: Pectic aci 65.3 71 0.0015 30.8 10.4 166 79-282 34-215 (289)
41 KOG2430 Glycosyl hydrolase, fa 61.8 70 0.0015 31.3 9.5 123 39-161 129-279 (587)
42 PTZ00470 glycoside hydrolase f 59.9 35 0.00076 35.9 7.8 74 311-387 162-257 (522)
43 PF01532 Glyco_hydro_47: Glyco 57.7 65 0.0014 33.3 9.4 74 43-117 96-178 (452)
44 PLN03012 Camelliol C synthase 54.7 2.4E+02 0.0051 31.3 13.3 98 181-291 615-723 (759)
45 COG2942 N-acyl-D-glucosamine 2 52.0 1.9E+02 0.0041 29.1 11.0 124 263-389 73-211 (388)
46 KOG2430 Glycosyl hydrolase, fa 50.9 2.5E+02 0.0055 27.6 11.3 85 302-389 182-285 (587)
47 cd02889 SQCY Squalene cyclase 47.2 2.8E+02 0.0061 27.0 12.4 80 255-342 33-129 (348)
48 PLN03012 Camelliol C synthase 46.9 65 0.0014 35.5 7.6 93 187-290 566-660 (759)
49 PRK11097 endo-1,4-D-glucanase; 46.6 1E+02 0.0022 31.0 8.4 80 304-386 116-213 (376)
50 PF06917 Pectate_lyase_2: Peri 43.3 93 0.002 32.3 7.5 75 309-389 389-474 (557)
51 PF06662 C5-epim_C: D-glucuron 42.2 29 0.00063 31.3 3.4 43 77-119 22-66 (189)
52 KOG2431 1, 2-alpha-mannosidase 40.0 67 0.0014 32.5 5.8 74 44-118 193-276 (546)
53 cd02892 SQCY_1 Squalene cyclas 39.4 3.1E+02 0.0066 29.7 11.4 129 253-386 314-487 (634)
54 PF00432 Prenyltrans: Prenyltr 36.6 34 0.00074 22.5 2.3 34 270-304 3-36 (44)
55 PF07221 GlcNAc_2-epim: N-acyl 36.0 1.6E+02 0.0035 28.9 8.0 76 43-120 37-117 (346)
56 PF06662 C5-epim_C: D-glucuron 34.7 54 0.0012 29.6 4.0 34 349-384 29-62 (189)
57 TIGR01507 hopene_cyclase squal 27.5 8.2E+02 0.018 26.5 24.5 41 250-291 383-425 (635)
58 TIGR01507 hopene_cyclase squal 25.1 6.8E+02 0.015 27.2 11.0 87 263-365 11-98 (635)
59 COG3531 Predicted protein-disu 24.7 41 0.00089 30.4 1.4 20 297-316 9-28 (212)
60 KOG2204 Mannosyl-oligosacchari 23.1 2.5E+02 0.0054 29.7 6.7 38 301-341 524-561 (625)
61 PF08047 His_leader: Histidine 23.0 54 0.0012 16.5 1.0 15 1-15 1-15 (16)
62 PRK11097 endo-1,4-D-glucanase; 21.6 1.3E+02 0.0029 30.2 4.4 41 78-118 111-151 (376)
63 TIGR01787 squalene_cyclas squa 21.4 3.3E+02 0.0072 29.4 7.8 40 249-289 490-529 (621)
64 TIGR03463 osq_cycl 2,3-oxidosq 20.9 3.6E+02 0.0077 29.3 7.9 95 184-290 450-546 (634)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=1e-66 Score=478.90 Aligned_cols=371 Identities=51% Similarity=0.901 Sum_probs=332.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q 013959 38 INMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCAS 117 (433)
Q Consensus 38 ~~~~~~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~ 117 (433)
++-++-.+.+++.|.+|.|.+++.+|.... . .+.+.++|+|..|||+++.++|++|.|+.++..+.++++.+..
T Consensus 28 ~~~~~~~e~~~r~~~~ikd~~~~~~~~~S~----d--~~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~ 101 (403)
T KOG2787|consen 28 PTGKLFTEFIKRLATKIKDLVVEMTWGKSG----D--EVRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLV 101 (403)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhcccC----C--CCcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 344455688999999999999999997432 1 2468999999999999999999999999999999999999885
Q ss_pred HhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHH
Q 013959 118 VVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l 197 (433)
.-. +.+.++|++|.+|++++.+++++..|+++.++.++.++..+.. .+ .+-++|+++|.+|++|+++.+
T Consensus 102 ~~~-s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~---~~-------~dlp~ElLyGRaGYL~a~lfl 170 (403)
T KOG2787|consen 102 ASR-SSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL---CS-------SDLPDELLYGRAGYLWACLFL 170 (403)
T ss_pred hcc-ccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc---CC-------ccccHHHHhhHHHHHHHHHHH
Confidence 322 3467999999999999999999999999999999998887631 12 356799999999999999999
Q ss_pred HhHhCCCCCchhhHHHHHHHHHhccccccccC-CCCCccccccccccCCCccchhHHHHHHhcCCC---ChhHHHHHHHH
Q 013959 198 NKHLGAGTLPNELLMPIVDAVLAGGRAGATAN-TACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGT 273 (433)
Q Consensus 198 ~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~~---~~~~~~~i~~~ 273 (433)
.+..+.+++.+..|..+++.|+..++.+++.. ..+|++|+|+++.|+|.|||.+||+++|+.-.+ .+...+.++.+
T Consensus 171 Nk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~s 250 (403)
T KOG2787|consen 171 NKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGS 250 (403)
T ss_pred HhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhH
Confidence 99999999999999999999999998877654 368999999999999999999999999998664 23458999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCCC-Ccccc
Q 013959 274 LRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLAD 352 (433)
Q Consensus 274 l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~~-~~LCH 352 (433)
++|++++++| .||+|.+.+++.+.+++||||+||+++.+.++++ +++ .++|++.+.++++.+|++|++++ +++||
T Consensus 251 ldym~~~rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~--VF~-Eekyl~aa~ecadvVW~rGlLkkg~Gich 326 (403)
T KOG2787|consen 251 LDYMIQNRFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQ--VFK-EEKYLEAAMECADVVWKRGLLKKGVGICH 326 (403)
T ss_pred HHHHHHccCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHH--Hhh-HHHHHHHHHHHHHHHHHhhhhhcCCcccc
Confidence 9999999999 9999999888888899999999999999999999 999 99999999999999999999887 99999
Q ss_pred cchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCCCCC
Q 013959 353 GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYE 432 (433)
Q Consensus 353 G~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~~~ 432 (433)
|.+||+++||.+|++|+|.+|..||.+++++++++..+ -+.+.++.++|||+|+||.+|.|+++..|++++||+||
T Consensus 327 GvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~~----~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~E 402 (403)
T KOG2787|consen 327 GVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGFS----HGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYE 402 (403)
T ss_pred cccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhhh----ccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCc
Confidence 99999999999999999999999999999999997642 24467899999999999999999999999999999999
Q ss_pred C
Q 013959 433 L 433 (433)
Q Consensus 433 ~ 433 (433)
+
T Consensus 403 l 403 (403)
T KOG2787|consen 403 L 403 (403)
T ss_pred C
Confidence 6
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=1.8e-53 Score=422.14 Aligned_cols=333 Identities=48% Similarity=0.860 Sum_probs=273.6
Q ss_pred ccChHHHHHHHHHHhhh----hCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHHHHH
Q 013959 82 YTGLLGTAFICLRSYEL----TGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLN 157 (433)
Q Consensus 82 Y~G~~Gial~l~~L~~~----t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~ 157 (433)
|+|.+||+|||.+++++ +++++|++.|.+.++.+...+.. ....++++|.+|+++++..+++.++++++.+.+.+
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~-~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~ 79 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPD-DRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLS 79 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhccc-ccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 89999999999999999 99999999999999887766543 45689999999998888888999998887776666
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccC-CCCCccc
Q 013959 158 LFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN-TACPLMY 236 (433)
Q Consensus 158 ~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~-~~~~~~~ 236 (433)
.+.++... .++. . .+..+|+++|.||++++|+.+++.++++..+.+.++++++.+++..+...... ...+.+|
T Consensus 80 ~~~~~~~~-~~~~-~----~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 153 (343)
T cd04794 80 KFLQLLES-VVSP-D----SGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMY 153 (343)
T ss_pred HHHHHHHH-Hhhc-c----cCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Confidence 65555321 1111 0 12457999999999999999999987555456688888888776543222110 1223566
Q ss_pred cccccccCCCccchhHHHHHHhcCCC---ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CCcccccccCChhHHHH
Q 013959 237 RWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP-RDKLVQWSHGATGVAIT 312 (433)
Q Consensus 237 ~~~~~~~~G~aHG~aGI~~~L~~l~~---~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~-~~~~~~WChG~~Gi~l~ 312 (433)
.|.+..++|||||++||+++|+++.. ++++.+.++++++|+++.+.+ .|+||+.+... +...++||||+|||+++
T Consensus 154 ~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~~ 232 (343)
T cd04794 154 EWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFP-SGNFPSSLGNRKRDRLVQWCHGAPGIVYL 232 (343)
T ss_pred cccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhcc-CCCCCCccCCCCCCccccccCCCchHHHH
Confidence 77777889999999999999998862 567889999999999887554 68999876432 34567999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCCC-CcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhh
Q 013959 313 LCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNL 391 (433)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~~-~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~ 391 (433)
|+.+++ +++ ++++.+.++++++.+|++|+..+ +|||||++||+++|+++++.+++++|.++|.++++.+++...+
T Consensus 233 l~~~~~--~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~~~~- 308 (343)
T cd04794 233 LAKAYL--VFK-EEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFK- 308 (343)
T ss_pred HHHHHH--HhC-CHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcchhh-
Confidence 999999 998 99999999999999999998764 8999999999999999999999999999999999999886542
Q ss_pred cccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCC
Q 013959 392 VTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFP 429 (433)
Q Consensus 392 ~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp 429 (433)
. ..+.+++++|||+|+|||+|+|+|+.+|+++.||
T Consensus 309 --~-~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 309 --N-GARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred --h-ccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 1 1345789999999999999999999999999998
No 3
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=6.3e-46 Score=381.04 Aligned_cols=349 Identities=16% Similarity=0.200 Sum_probs=285.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhhcCCC------------C-CCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHH
Q 013959 38 INMSLPCETFLKAAVSLKDQVVEVTWRRGS------------G-GGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQE 104 (433)
Q Consensus 38 ~~~~~~~~~~l~~A~~i~d~i~~~~~~~~~------------~-~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y 104 (433)
.+..+..+-|++.|..|+|.|++...++.. . +..+.++|++.+||+|.+||+|||++|+.+||...|
T Consensus 589 ~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y 668 (963)
T COG4403 589 SKHTIDNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYY 668 (963)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHH
Confidence 455667889999999999999985544432 1 223457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC--CCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCcc
Q 013959 105 LLLSAEIIDTCASVVRDS--TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYD 182 (433)
Q Consensus 105 ~~~a~~~i~~~~~~~~~~--~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D 182 (433)
.+.|.++++.....+... +.+.|.|+|.+|..+++..++..++|......+.+.+..+. ..+. .+..+|
T Consensus 669 ~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le--~~v~-------~~~~~d 739 (963)
T COG4403 669 KEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLE--ILVQ-------KSKDPD 739 (963)
T ss_pred HHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHH--HHHh-------hccCcc
Confidence 999999999888777532 24578999999987777888999888766555555555332 1232 235699
Q ss_pred ccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCC-
Q 013959 183 LLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP- 261 (433)
Q Consensus 183 ~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~- 261 (433)
++.|.+|++.+|+.+|+.+.++++++ .+..+++.+.+...... +|. +..+||+||++||+++|+.++
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~-~ais~~~~l~~~~v~~d----------~s~-~~l~gfshg~sgi~~tL~~ly~ 807 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLE-LAISLGRILMEKIVGND----------SSE-TVLLGFSHGASGIILTLLKLYE 807 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHhhccc----------ccc-ceecccccchHHHHHHHHHHHH
Confidence 99999999999999999988888764 66677888876542211 233 678999999999999999987
Q ss_pred C--ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 013959 262 L--SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVL 339 (433)
Q Consensus 262 ~--~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~ 339 (433)
. .+.+++.|++++.++++.+.. . ...||||+|||+.+|+...+ +++ |+.+.++++.++.++
T Consensus 808 ~T~e~~l~~~i~e~~~~Er~~f~~---~-----------~~~Wc~g~~gilv~rl~l~~--~~~-de~i~~Ei~~~l~~~ 870 (963)
T COG4403 808 ATGEESLLKKIKELLSYERMKFSD---K-----------FTRWCSGAPGILVSRLLLKK--IYD-DESIDREIQQALKTI 870 (963)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHH---H-----------HHHHhcCCcceeechhhhhh--hcc-hHHHHHHHHHHHHHH
Confidence 3 456789999999999887653 1 24799999999999999999 888 999999999999999
Q ss_pred HHcCCCCCCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHH
Q 013959 340 WKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFD 419 (433)
Q Consensus 340 ~~~g~~~~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr 419 (433)
...|++ ++++|||++|++++|+-+++.+++++..+.|.+.+..+++...+.....+.+.+.+++|||+|++||||.|||
T Consensus 871 i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR 949 (963)
T COG4403 871 INNGLG-NDSLCHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLR 949 (963)
T ss_pred HhccCC-CccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHH
Confidence 999998 9999999999999999999999999999999998888877655432222345677889999999999999999
Q ss_pred ccCccc
Q 013959 420 LLEPVN 425 (433)
Q Consensus 420 ~~~p~~ 425 (433)
...|+.
T Consensus 950 ~~~p~~ 955 (963)
T COG4403 950 ISSPKF 955 (963)
T ss_pred HhCccc
Confidence 999965
No 4
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=2.3e-47 Score=379.95 Aligned_cols=345 Identities=23% Similarity=0.364 Sum_probs=253.7
Q ss_pred CCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCC-cccccCcchHHHHHHHHHHHHhCChhHHH
Q 013959 75 RGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR-HVTFLCGRGGIYAIGAVVANRMGDRSRRD 153 (433)
Q Consensus 75 ~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~-~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~ 153 (433)
+|++.+||+|.+||++||.++++.+++++|.+.++++++.+...+..... .+|+++|.+|+++++..+++..++....+
T Consensus 1 ~~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~ 80 (355)
T PF05147_consen 1 SPLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIE 80 (355)
T ss_dssp -CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHH
T ss_pred CCCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHH
Confidence 46889999999999999999999999999999999999998877654322 79999999999887777666655444444
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCC
Q 013959 154 FFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACP 233 (433)
Q Consensus 154 ~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~ 233 (433)
..++.+.+.+.+.... . ....+|+++|.+|++.+++.+++.++++.++ ..+.+++++|++....... ...+
T Consensus 81 ~~l~~~~~~i~~~~~~-~-----~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~~--~~~~ 151 (355)
T PF05147_consen 81 ELLKRILNIIENSISN-D-----SNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDDP--SENQ 151 (355)
T ss_dssp HHHHHHHHCHHHHHHC-T-------GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCHT--CCGS
T ss_pred HHHHHHHHHHHHhhhh-c-----ccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhccc--ccCC
Confidence 5555554433221111 0 0112899999999999999999988766665 4677777777765433210 1123
Q ss_pred ccccc-cccccCCCccchhHHHHHHhcCC--C--ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-cccccccCCh
Q 013959 234 LMYRW-HGTRYWGAANGLAGILQVLLHFP--L--SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRD-KLVQWSHGAT 307 (433)
Q Consensus 234 ~~~~~-~~~~~~G~aHG~aGI~~~L~~l~--~--~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~-~~~~WChG~~ 307 (433)
..+.| .+..++|||||.+||+++|++++ . ++++.+.++++++++.+.+.+.+++||+.+..... .+.+||||++
T Consensus 152 ~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 152 IGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp SSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHH
T ss_pred CccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcH
Confidence 44556 56678999999999999999887 2 45678999999999999886656779987643211 1679999999
Q ss_pred hHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcC-CCCCCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHh
Q 013959 308 GVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNG-LVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYH 386 (433)
Q Consensus 308 Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g-~~~~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~ 386 (433)
||+++++.+++ .++ ++.+.+.++++.+.+++++ ...++|||||.+|++++|+.+++.++++++.++++++.+.+++
T Consensus 232 Gi~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 232 GILLALLKAYK--ILD-DEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp HHHHHHHHHHH--HCT--HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH--hhc-hHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999 888 9999999999999999887 5567999999999999999999999999999999999888877
Q ss_pred hhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCCCC
Q 013959 387 NAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGY 431 (433)
Q Consensus 387 ~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~~ 431 (433)
...+.......+....++|||+|.|||+++|+|+.+|++..||.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~ 353 (355)
T PF05147_consen 309 YYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSI 353 (355)
T ss_dssp TCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT
T ss_pred HhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 554310001123456778999999999999999999999989875
No 5
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=2.8e-44 Score=394.54 Aligned_cols=347 Identities=19% Similarity=0.214 Sum_probs=270.5
Q ss_pred hhhcCCCCCCC--CCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccC---CCcccccCcchHH
Q 013959 61 VTWRRGSGGGG--EPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS---TRHVTFLCGRGGI 135 (433)
Q Consensus 61 ~~~~~~~~~~~--~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~---~~~~~~~~G~~Gi 135 (433)
.+|++...... +.++|++.+||+|.+||++||+++++++++++|.+.|+++++.+...+... ....|+|+|.+|+
T Consensus 467 ~~Wi~~~~~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi 546 (825)
T cd04792 467 INWIGLVLSDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGI 546 (825)
T ss_pred HhhCCCcccCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHH
Confidence 67987653222 346789999999999999999999999999999999999999887766422 1468899999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHH
Q 013959 136 YAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIV 215 (433)
Q Consensus 136 ~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~ 215 (433)
++++..+++.++++.+.+.+.+.+..+. + .+. .+..+|+++|.||++++|+.+++.++++.++ +.+.+++
T Consensus 547 ~~~L~~l~~~~~~~~~~~~a~~~~~~l~-~-~~~-------~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l-~~a~~~~ 616 (825)
T cd04792 547 LYALTHLGKLLKDDRLLNLAKEILDLID-E-LIE-------KDEKLDFISGAAGLILVLLSLYELFLSERFL-DLALKCG 616 (825)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-H-hhc-------cccCCCEeeecHHHHHHHHHHHhccCChHHH-HHHHHHH
Confidence 8877788888888765433332222221 1 111 2356899999999999999999998877664 3667777
Q ss_pred HHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCC--C-ChhHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 013959 216 DAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP--L-SEEDAEDVKGTLRYMMSNRFPQSGNYPVSE 292 (433)
Q Consensus 216 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~--~-~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~ 292 (433)
+++++...... ...|.+....++|||||++||+++|++++ . ++++.+.+.++++++++.+.+..++||...
T Consensus 617 ~~l~~~~~~~~------~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~ 690 (825)
T cd04792 617 DHLLENASNED------GGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKD 690 (825)
T ss_pred HHHHHhhhhcc------CCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcC
Confidence 77775432211 11122223467899999999999999886 2 567889999999999887766667998322
Q ss_pred CCCCCcccccccCChhHHHHHHHHhcCCC--CCCcHHHHHHHHHHHHHHHHcCCCCCCcccccchhHHHHHHHHHHHhCC
Q 013959 293 GNPRDKLVQWSHGATGVAITLCKASQVSV--FPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGE 370 (433)
Q Consensus 293 ~~~~~~~~~WChG~~Gi~l~~l~~~~~~~--~~~~~~~~~~a~~a~~~~~~~g~~~~~~LCHG~aG~~~~Ll~~~~~t~~ 370 (433)
......+||||++||+++++.+.+ + ++ ++.+.+.+.++++.+++.++..++|||||.+|++++|+.+++.+++
T Consensus 691 --~~~~~~~WChG~~GI~lal~~~~~--~~~~~-d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~ 765 (825)
T cd04792 691 --GNSFSAAWCHGAPGILLARLELLK--FNDLD-DEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGD 765 (825)
T ss_pred --cCCCCCcccCCcHHHHHHHHHHHh--cCccc-hHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCC
Confidence 223457999999999999999999 7 67 8899999999999998888777899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCCC
Q 013959 371 TIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPG 430 (433)
Q Consensus 371 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~ 430 (433)
+++.+.|.+.+..++....+..+..+.+....++|||+|+|||||+|||+.+|+. .|+
T Consensus 766 ~~~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~~--vps 823 (825)
T cd04792 766 EKLQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDR--VPS 823 (825)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCCC--CCC
Confidence 9999999999998887655311122334456789999999999999999999987 665
No 6
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=3.6e-43 Score=353.54 Aligned_cols=336 Identities=17% Similarity=0.165 Sum_probs=234.4
Q ss_pred ccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHH-HhCChhHHHHHHHHHH
Q 013959 82 YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVAN-RMGDRSRRDFFLNLFL 160 (433)
Q Consensus 82 Y~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~-~~g~~~~~~~~~~~i~ 160 (433)
|+|.+||+|||++++++|++++|.+.|+++++.+...++......|+|+|.+|+.+++..+++ ...+++.++.+.+.+.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIK 80 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999888775423468999999999766666555 2233333322222222
Q ss_pred HHHHhccCCC-CCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccC--C-CCCccc
Q 013959 161 EIAQERALPA-GPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN--T-ACPLMY 236 (433)
Q Consensus 161 ~~~~~~~l~~-~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~--~-~~~~~~ 236 (433)
.++ +..+.. ...+...+..+|+++|.||++++|+.+++ .+... ...+.++.+.+.+......... . .....+
T Consensus 81 ~l~-~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (382)
T cd04793 81 AIV-RRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHE--PDSEL-LREILDYLVYLTEPLNQDITLYIWSENQPSET 156 (382)
T ss_pred HHH-HHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccC--cchhH-HHHHHHHHHHHHHHHhcCCCCccCcCcCCCcc
Confidence 111 101100 00000034679999999999999998872 11111 2245555555554321100000 0 000000
Q ss_pred cc----cccccCCCccchhHHHHHHhcCC----CChhHHHHHHHHHHHHHhccCC-CCCCCCCCCC-----------CCC
Q 013959 237 RW----HGTRYWGAANGLAGILQVLLHFP----LSEEDAEDVKGTLRYMMSNRFP-QSGNYPVSEG-----------NPR 296 (433)
Q Consensus 237 ~~----~~~~~~G~aHG~aGI~~~L~~l~----~~~~~~~~i~~~l~~l~~~~~~-~~gnwp~~~~-----------~~~ 296 (433)
.+ .+..++|||||++||+++|++++ .++++.+.++++++|+.+.+.+ ..++|++.+. ...
T Consensus 157 ~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 236 (382)
T cd04793 157 ESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPN 236 (382)
T ss_pred ccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCC
Confidence 11 12357899999999999998774 2567899999999999887755 3458765431 112
Q ss_pred CcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCC----CCCCcccccchhHHHHHHHHHHHhCChH
Q 013959 297 DKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGL----VKKVGLADGAAGNAYAFLSLYRLTGETI 372 (433)
Q Consensus 297 ~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~----~~~~~LCHG~aG~~~~Ll~~~~~t~~~~ 372 (433)
..+.+||||+|||+++++.+++ .++ ++.+.+.+.++++.+++... ..++|||||.+|++++|+++++.+++++
T Consensus 237 ~~~~~wChG~~Gi~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~ 313 (382)
T cd04793 237 PFRDAWCYGTPGIARALQLAGK--ALD-DQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNE 313 (382)
T ss_pred CCCCCCCCCcHHHHHHHHHHHH--HhC-CHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcH
Confidence 2357999999999999999999 888 99999999999888776532 2469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccC--------CcCCCCCCCcccccHHHHHHHHHHccCcc
Q 013959 373 YVERANAFSSFLYHNAQNLVTSG--------HTRGADHGYSLFQGLAGTACIWFDLLEPV 424 (433)
Q Consensus 373 ~~~~a~~~~~~~~~~~~~~~~~g--------~~~~~~~~~gLm~G~aGig~~Llr~~~p~ 424 (433)
+.++|+++.+.+++...+....+ .......++|||+|.|||+++|||+.+|+
T Consensus 314 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 314 FKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 99999999998887644210000 11234577999999999999999999987
No 7
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.3e-42 Score=341.66 Aligned_cols=326 Identities=31% Similarity=0.459 Sum_probs=252.6
Q ss_pred ccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCC-CcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 013959 82 YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDST-RHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFL 160 (433)
Q Consensus 82 Y~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~-~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~ 160 (433)
|+|.+||++||.++++.+++++|.+.+...++.+...+.... ...|+|+|.+|+++++..+++.+++++..+.+.+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999998887664322 4689999999998888888888888776655555444
Q ss_pred HHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccc---
Q 013959 161 EIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR--- 237 (433)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~--- 237 (433)
..... .... . ....+|+++|.||++++|+.+++.++++.+. ..+.++++.+++....... ...|.
T Consensus 81 ~~~~~-~~~~-~----~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~~~~~~ 148 (343)
T cd04434 81 LLVEL-ILED-L----KDLNYDLLSGLAGLLLALLLLYKTFGEEIFL-ELIRKILDYLLELGKNGDG-----KIRWPMYF 148 (343)
T ss_pred Hhhhh-hhcc-c----CCCCcceeechHHHHHHHHHHHHhcCCcCHH-HHHHHHHHHHHHhhhhccC-----CCceeeec
Confidence 44311 1110 0 2357899999999999999999988776653 5777888888765432111 11121
Q ss_pred ccccccCCCccchhHHHHHHhcCC--C-ChhHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCcccccccCChhHHHHH
Q 013959 238 WHGTRYWGAANGLAGILQVLLHFP--L-SEEDAEDVKGTLRYMMSNRFPQSGNYPVSE-GNPRDKLVQWSHGATGVAITL 313 (433)
Q Consensus 238 ~~~~~~~G~aHG~aGI~~~L~~l~--~-~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~-~~~~~~~~~WChG~~Gi~l~~ 313 (433)
..+..++|||||.+||+++|++++ . ++.+.+.+++++.++.+.+.+..++|++.. ........+||||++||++++
T Consensus 149 ~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l 228 (343)
T cd04434 149 PEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLAL 228 (343)
T ss_pred cCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHH
Confidence 123467999999999999999886 2 445677888888888887766567776522 222345679999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCC--CCCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhh
Q 013959 314 CKASQVSVFPSDREFRDAAIEAGEVLWKNGLV--KKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNL 391 (433)
Q Consensus 314 l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~--~~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~ 391 (433)
+.+++ .++ ++++.+.++++++.+++.... .++|||||.+|++++|+++++.++++++.+.+.+++..++......
T Consensus 229 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 305 (343)
T cd04434 229 LLAYK--ALG-DDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLISHANGW 305 (343)
T ss_pred HHHHH--HcC-cHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999 888 999999999999988887763 5699999999999999999999999999999999888777643321
Q ss_pred cccCCcCCCCCCCcccccHHHHHHHHHHccCc
Q 013959 392 VTSGHTRGADHGYSLFQGLAGTACIWFDLLEP 423 (433)
Q Consensus 392 ~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p 423 (433)
.....+....++|||+|+|||+++|+|+.+|
T Consensus 306 -~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 306 -LCGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred -cccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 1111134567899999999999999999998
No 8
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=1.4e-39 Score=319.98 Aligned_cols=315 Identities=20% Similarity=0.213 Sum_probs=233.1
Q ss_pred ccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 013959 82 YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE 161 (433)
Q Consensus 82 Y~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~ 161 (433)
|+|.+||++|+.+++. ..+.+.+.++|+...... .....+|+|+|.+|+++++.. .+..+..+++++.+.+
T Consensus 1 ~~G~aGi~~~l~~~~~----~~~~~~~~~~i~~~~~~~-~~~~~~gl~~G~~Gi~~~l~~----~~~~~~~~~~~~~~~~ 71 (321)
T cd04791 1 AHGAAGVLMALLRSGF----GDYAENALDWIEEAATRE-LSGSPPGLYDGRAGIAWVLIE----LGHPARAKALFDTLLD 71 (321)
T ss_pred CchHHHHHHHHHHhcC----CCCCchHHHHHHHHhhcc-CCCCCCccccChhhHHHHHHH----cCCHHHHHHHHHHHhc
Confidence 7899999999999871 123333445665554322 112358999999999766543 2333334444433322
Q ss_pred HHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccccc
Q 013959 162 IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGT 241 (433)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
. +. .+.+.|+++|.+|++++++.+++. +++.++ +.++++++++.+...+.. ....|.....
T Consensus 72 ~-----~~-------~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~~~~l~~~~~~~~-----~~~~~~~~~~ 132 (321)
T cd04791 72 E-----PS-------ANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKIAELLAEALERGD-----PALLWPDFDR 132 (321)
T ss_pred c-----cc-------cccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHhhccc-----cccccccCCC
Confidence 1 11 235789999999999999999998 887765 477778888776432211 1112333345
Q ss_pred ccCCCccchhHHHHHHhcCC-C--ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhc
Q 013959 242 RYWGAANGLAGILQVLLHFP-L--SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQ 318 (433)
Q Consensus 242 ~~~G~aHG~aGI~~~L~~l~-~--~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~ 318 (433)
.+.||+||.|||+++|++++ . ++++++.++++++++++.+.+..++|..... ......+||||++||+++++.+++
T Consensus 133 ~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~wchG~aGi~~~l~~l~~ 211 (321)
T cd04791 133 VDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDE-GARLLPYLCSGSAGLGLLMLRLEA 211 (321)
T ss_pred CCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCC-CCccCcccCCCcHHHHHHHHHHHH
Confidence 67899999999999999887 2 6778999999999998877665677754332 223456899999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCCCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcC
Q 013959 319 VSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTR 398 (433)
Q Consensus 319 ~~~~~~~~~~~~~a~~a~~~~~~~g~~~~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~ 398 (433)
+++ ++++.+.++++++.+++.+ ..++|||||.+|++.+|+.+++.++++++++.+.++++.++....... ....+
T Consensus 212 --~~~-d~~~~~~a~~~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 286 (321)
T cd04791 212 --ITG-DKRWRDEADGIAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIE-GPVFP 286 (321)
T ss_pred --hcC-CHHHHHHHHHHHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCcc-ccccC
Confidence 998 9999999999998888765 457999999999999999999999999999999999999887543210 00111
Q ss_pred C---CCCCCcccccHHHHHHHHHHccCcccCCCCC
Q 013959 399 G---ADHGYSLFQGLAGTACIWFDLLEPVNARFPG 430 (433)
Q Consensus 399 ~---~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~ 430 (433)
. ...++|||+|.|||+++|+|+.++...+||.
T Consensus 287 ~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 287 GDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred CccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 1 2346899999999999999999998889994
No 9
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.93 E-value=8.2e-25 Score=217.01 Aligned_cols=261 Identities=18% Similarity=0.171 Sum_probs=179.7
Q ss_pred cCcchHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCC
Q 013959 129 LCGRGGIYAIGAVVANR----MGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAG 204 (433)
Q Consensus 129 ~~G~~Gi~~~~~~l~~~----~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~ 204 (433)
|+|.+|+.+++..+++. ++++++.+.+.+.+..... .++ .+...|++.|.+|++++++.+++.++++
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~--~~~-------~~~~~~~~~G~aGi~~~l~~l~~~~~d~ 71 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLR--AIP-------DDRRISFLCGNAGVYAVGAAVYHYLKDE 71 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHh--hcc-------cccCCCccCCcHHHHHHHHHHHHHhcCh
Confidence 57999997777778888 8887776665555444321 232 2356899999999999999999998887
Q ss_pred CCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCC-C-C--hhH----HHHHHHHHHH
Q 013959 205 TLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP-L-S--EED----AEDVKGTLRY 276 (433)
Q Consensus 205 ~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~-~-~--~~~----~~~i~~~l~~ 276 (433)
.+++ .+.+.++.+++......+ .....+-||.||++++|+.++ . . +.. .+.++..+++
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~ 137 (343)
T cd04794 72 DEVD-EFLSKFLQLLESVVSPDS-------------GLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILES 137 (343)
T ss_pred HHHH-HHHHHHHHHHHHHhhccc-------------CCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 6543 344444555432111000 012377799999999999875 2 1 112 2334445555
Q ss_pred HHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHc----CCC-------
Q 013959 277 MMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKN----GLV------- 345 (433)
Q Consensus 277 l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~----g~~------- 345 (433)
..........+||...........+||||++||+.+++.+.+ .++ ++++.+.+.++++...+. |..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~--~~~-~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~ 214 (343)
T cd04794 138 GRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPL--FLL-KPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNR 214 (343)
T ss_pred HHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhh--hcC-CccHHHHHHHHHHHHHHhhccCCCCCCccCCC
Confidence 443333222356543322223457999999999999999998 787 899999999988765543 321
Q ss_pred ---CCCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccC
Q 013959 346 ---KKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLE 422 (433)
Q Consensus 346 ---~~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~ 422 (433)
...++|||.+|++.+++.+++.++++++.+.+++.++.+... |- ....+|||.|++|+++.||+++.
T Consensus 215 ~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~---~~~~~~lCHG~~G~~~~lL~~~~ 284 (343)
T cd04794 215 KRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR-------GL---LKKGPGLCHGIAGNAYAFLLLYR 284 (343)
T ss_pred CCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------CC---ccCCCccccCccchHHHHHHHHH
Confidence 114799999999999999999999999999888877655322 11 12358999999999999999887
Q ss_pred ccc
Q 013959 423 PVN 425 (433)
Q Consensus 423 p~~ 425 (433)
+..
T Consensus 285 ~~~ 287 (343)
T cd04794 285 LTG 287 (343)
T ss_pred HhC
Confidence 643
No 10
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.93 E-value=7.7e-24 Score=209.27 Aligned_cols=291 Identities=19% Similarity=0.164 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhcc--
Q 013959 44 CETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-- 121 (433)
Q Consensus 44 ~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~-- 121 (433)
++++.+.+.+..+.+.+..-... . .+.++|+|.+|+++++.++++.++++++++.+.+.++.+......
T Consensus 20 ~~~~~~~~~~~~~~i~~~~~~~~------~---~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T cd04434 20 DEKYQDLAHKALEYIVKSLSSLP------D---TDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDL 90 (343)
T ss_pred CccHHHHHHHHHHHHHHHHHhCC------C---CCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhccc
Confidence 45677778888788777532211 0 468999999999999999999999999999999988877765421
Q ss_pred CCCcccccCcchHHHHHHHHHHHHhCChhHH---HHHHHHHHHHHHhccCCCCCC----CCCCCCCccccccchHHHHHH
Q 013959 122 STRHVTFLCGRGGIYAIGAVVANRMGDRSRR---DFFLNLFLEIAQERALPAGPE----EGGFGMSYDLLYGRAGFLWAA 194 (433)
Q Consensus 122 ~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~---~~~~~~i~~~~~~~~l~~~~~----~~~~~~~~D~l~G~aG~l~~L 194 (433)
.....++++|.+|++.++..+++.++++... ..+.+.+.+...+ ...... ........++.+|.+|++++|
T Consensus 91 ~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l 168 (343)
T cd04434 91 KDLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKN--GDGKIRWPMYFPEGRVNLGLAHGLAGILLAL 168 (343)
T ss_pred CCCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhh--ccCCCceeeeccCCccccchhhhhHHHHHHH
Confidence 2356899999999987777778777665433 3333333332211 000000 000123567899999999999
Q ss_pred HHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccc----ccccccCCCccchhHHHHHHhcCC-C--ChhHH
Q 013959 195 LFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR----WHGTRYWGAANGLAGILQVLLHFP-L--SEEDA 267 (433)
Q Consensus 195 l~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~G~aHG~aGI~~~L~~l~-~--~~~~~ 267 (433)
+.+++.+.++ .++..++.+.....+.. ... ...+|. .......+||||.+||+.+|.+++ . ++.+.
T Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~ 241 (343)
T cd04434 169 LLLYKKTVDK-SLEALIKALLKYERRLQ---DDS---GGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYD 241 (343)
T ss_pred HHHHHhcCCh-hHHHHHHHHHHHHHHcc---CCC---CCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHH
Confidence 9999988543 32334444333322211 100 011111 012346899999999999999876 2 35667
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHc-----
Q 013959 268 EDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKN----- 342 (433)
Q Consensus 268 ~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~----- 342 (433)
+.+++.++...+.... . + ...+||||.+|++.+++.+++ .++ ++++.+.+.+....+...
T Consensus 242 ~~~~~~~~~~~~~~~~-~--~---------~~~~lChG~~G~~~~ll~l~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~ 306 (343)
T cd04434 242 EAAEKALELAWKRGLL-E--L---------KNPGLCHGIAGNLLILLLLYK--LTG-DLKFLARALALALLLISHANGWL 306 (343)
T ss_pred HHHHHHHHHHHHhhhc-c--C---------CCCCcCcCccchHHHHHHHHH--HhC-CHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777766543221 0 1 124899999999999999999 888 899988887776554321
Q ss_pred -----CCCCCCcccccchhHHHHHHHHHHH
Q 013959 343 -----GLVKKVGLADGAAGNAYAFLSLYRL 367 (433)
Q Consensus 343 -----g~~~~~~LCHG~aG~~~~Ll~~~~~ 367 (433)
+...+++||+|.+|++++|+++.+.
T Consensus 307 ~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 307 CGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred ccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 1123489999999999999998765
No 11
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.91 E-value=3.2e-23 Score=228.11 Aligned_cols=289 Identities=19% Similarity=0.195 Sum_probs=196.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccC
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS 122 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~ 122 (433)
.+++|.+.|.++.+.+....-... ....+.|+|+|.+|+++++.++++.+++++|.+.+.+.++.+..... .
T Consensus 508 ~~~~~~~~a~~~l~~l~~~~~~~~-------~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~-~ 579 (825)
T cd04792 508 GDERYTRLARKILDSLVKSLSELK-------TDDTGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIE-K 579 (825)
T ss_pred CChHHHHHHHHHHHHHHHHHhccc-------ccccCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-c
Confidence 355788888888888877532211 01256899999999999999999999999999999988887665443 2
Q ss_pred CCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCC--CCCCCCCCccccccchHHHHHHHHHHhH
Q 013959 123 TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGP--EEGGFGMSYDLLYGRAGFLWAALFVNKH 200 (433)
Q Consensus 123 ~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~--~~~~~~~~~D~l~G~aG~l~~Ll~l~~~ 200 (433)
....+++.|.+|++.++..+++.++++.+.+.+.+-+..+. +....... .........++.+|.+|++++|+.+++.
T Consensus 580 ~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~-~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~ 658 (825)
T cd04792 580 DEKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLL-ENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKV 658 (825)
T ss_pred ccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHH-HhhhhccCCcccccccccccccccHHHHHHHHHHHHHH
Confidence 34588999999998777778888887665443332222222 10111000 0000113568899999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccc----ccccCCCccchhHHHHHHhcCC-C----ChhHHHHHH
Q 013959 201 LGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWH----GTRYWGAANGLAGILQVLLHFP-L----SEEDAEDVK 271 (433)
Q Consensus 201 ~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~----~~~~~G~aHG~aGI~~~L~~l~-~----~~~~~~~i~ 271 (433)
++++.+.+ .+.++.+..... .. +..+.|. .....+||||++||+++++++. . ++.+.+.+.
T Consensus 659 ~~d~~~~~-~a~~~l~~~~~~---~~------~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~ 728 (825)
T cd04792 659 TGDSRYLK-LAHKALKYERRL---FS------EEGWNWPRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIE 728 (825)
T ss_pred cCcHHHHH-HHHHHHHHHHHh---cC------HhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 98865432 333333322211 11 1122332 1245899999999999988764 2 234567788
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH--------cC
Q 013959 272 GTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWK--------NG 343 (433)
Q Consensus 272 ~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~--------~g 343 (433)
++++...... .+. ..+||||.+|++.+++.+++ .++ ++++.+.+.+.++.++. .|
T Consensus 729 ~~~~~~~~~~-----~~~---------~~slCHG~~Gil~~ll~~~~--~~~-~~~~~~~a~~~~~~l~~~~~~~~~~~g 791 (825)
T cd04792 729 IALKTTLKEG-----FGN---------NHSLCHGDLGNLEILLYAAK--AFG-DEKLQELANSLAIKVLSQGKKNGWLCG 791 (825)
T ss_pred HHHHHHHHhc-----CCC---------CCeecCCCcchHHHHHHHHH--hcC-CHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 8887766432 111 13799999999999999999 898 88898888777654432 22
Q ss_pred CC---CCCcccccchhHHHHHHHHHHH
Q 013959 344 LV---KKVGLADGAAGNAYAFLSLYRL 367 (433)
Q Consensus 344 ~~---~~~~LCHG~aG~~~~Ll~~~~~ 367 (433)
+. .++|||.|.+|+++.|++++..
T Consensus 792 ~~~~~~~~glm~G~aGIgy~LLrl~~p 818 (825)
T cd04792 792 LPRGFESPGLMTGLAGIGYGLLRLAAP 818 (825)
T ss_pred CCCCCCCchhhhhHHHHHHHHHhhhCC
Confidence 22 2489999999999999988754
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.90 E-value=1.9e-22 Score=198.32 Aligned_cols=254 Identities=19% Similarity=0.134 Sum_probs=173.2
Q ss_pred CCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHH--
Q 013959 77 MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDF-- 154 (433)
Q Consensus 77 ~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~-- 154 (433)
.+.|+|+|.+||++++.++++. +.++++++.+..... .....++++|.+|++.++..+++. +++++.+.
T Consensus 38 ~~~gl~~G~~Gi~~~l~~~~~~-------~~~~~~~~~~~~~~~-~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~ 108 (321)
T cd04791 38 SPPGLYDGRAGIAWVLIELGHP-------ARAKALFDTLLDEPS-ANLNIDLASGLAGIGLALLYFART-GDPALLEAAA 108 (321)
T ss_pred CCCccccChhhHHHHHHHcCCH-------HHHHHHHHHHhcccc-cccCCccccchHHHHHHHHHHHhc-CChHHHHHHH
Confidence 5689999999999999987542 334445554443322 134588999999998777778888 87765533
Q ss_pred -HHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCC
Q 013959 155 -FLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACP 233 (433)
Q Consensus 155 -~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~ 233 (433)
+.+.+.+...+......+.. ......++.+|.||++++|+.+|+.++++++++ .+.++++.+++.... . +
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~-~A~~~~~~~~~~~~~---~----~ 179 (321)
T cd04791 109 KIAELLAEALERGDPALLWPD-FDRVDHGLLHGWAGIALFLLRLYKATGDSRYLE-LAEEALDKELARAVV---D----D 179 (321)
T ss_pred HHHHHHHHHhhcccccccccc-CCCCCCccccCcHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHhhcc---C----C
Confidence 33333332211000000000 012346789999999999999999999987653 555566655543211 0 1
Q ss_pred cccccc---ccccCCCccchhHHHHHHhcCC--C-ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCCh
Q 013959 234 LMYRWH---GTRYWGAANGLAGILQVLLHFP--L-SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGAT 307 (433)
Q Consensus 234 ~~~~~~---~~~~~G~aHG~aGI~~~L~~l~--~-~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~ 307 (433)
..|.|. .....+||||++||+++|++++ . ++++.+.++++++...+.. |. ..+||||.+
T Consensus 180 ~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------~~---------~~~lchG~~ 244 (321)
T cd04791 180 GGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC------YA---------NPGLFSGTA 244 (321)
T ss_pred CCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh------cc---------CccccCCcH
Confidence 112222 2346789999999999999876 2 5667888888888776432 21 137999999
Q ss_pred hHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCC-------------CCCCcccccchhHHHHHHHHHH
Q 013959 308 GVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGL-------------VKKVGLADGAAGNAYAFLSLYR 366 (433)
Q Consensus 308 Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~-------------~~~~~LCHG~aG~~~~Ll~~~~ 366 (433)
|++.+++.+++ .++ ++++.+.+.+..+.+.+..- ..+++||+|.+|++++|+++.+
T Consensus 245 G~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~ 313 (321)
T cd04791 245 GLGAHLNDLAA--EGD-NALYKAAAERLALYLIATADEIEGPVFPGDQGLRISTDLATGTAGILLFLLRLLT 313 (321)
T ss_pred hHHHHHHhhcc--ccc-ChHHHHHHHHHHHHhccccCCccccccCCccceeeccccccchHHHHHHHHHHhc
Confidence 99999999999 898 99999999888776653210 1138999999999999998875
No 13
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.86 E-value=3.1e-20 Score=186.97 Aligned_cols=299 Identities=17% Similarity=0.112 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhh-hhCChHHHHHHHHHHHHHHHH-hc
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYE-LTGNQQELLLSAEIIDTCASV-VR 120 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~-~t~~~~y~~~a~~~i~~~~~~-~~ 120 (433)
.+++|.+.|.+..+++++..-. . . .+.|+|+|.+|+++++..+++ ...++++++.+.+.+..+.+. ++
T Consensus 19 ~~~~~~~~a~~~l~~~~~~l~~--~-------~-~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T cd04793 19 KDEGYWERVHQYLSKALNYLLS--L-------G-YSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIKAIVRRRLE 88 (382)
T ss_pred cccchHHHHHHHHHHHHHHHHh--C-------C-CCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888888775321 1 1 457999999999999999987 445666676777776655432 11
Q ss_pred -------cCCCcccccCcchHHHHHHHHHHHHhCChh---HHHHHHHHHHHHHHhcc---CC--CCCCCCCC----C--C
Q 013959 121 -------DSTRHVTFLCGRGGIYAIGAVVANRMGDRS---RRDFFLNLFLEIAQERA---LP--AGPEEGGF----G--M 179 (433)
Q Consensus 121 -------~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~---~~~~~~~~i~~~~~~~~---l~--~~~~~~~~----~--~ 179 (433)
..+..++++.|.+|++.++..++ ..+.+ .+..+++.+.+...+.. ++ .......+ . .
T Consensus 89 ~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (382)
T cd04793 89 DAKSGEPPTPTNYDVISGLSGIGRYLLLRH--EPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHI 166 (382)
T ss_pred HHhcCCCCCCCCCceeechHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccc
Confidence 12345789999999976655444 11222 23334444333321100 00 00000000 0 1
Q ss_pred CccccccchHHHHHHHHHHhHh-CCCCCchhhHHHHHHHHHhccccccccCCCCCcccc----c------cccccCCCcc
Q 013959 180 SYDLLYGRAGFLWAALFVNKHL-GAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR----W------HGTRYWGAAN 248 (433)
Q Consensus 180 ~~D~l~G~aG~l~~Ll~l~~~~-~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~----~------~~~~~~G~aH 248 (433)
...+-+|.+|++++|..+++.. .++... +.+.+..+.+.+....-.+. .+.+..+. + ......+|||
T Consensus 167 ~~G~aHG~aGi~~~L~~~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~wCh 244 (382)
T cd04793 167 NLGLAHGIAGPLALLALAKERGIRVDGQL-EAIQKIIAWLDRWRLKNRKG-PWWPGLITNREQIGGRPNNPNPFRDAWCY 244 (382)
T ss_pred cccchhcchHHHHHHHHHHHcCCCcCChH-HHHHHHHHHHHHHHHhCCCC-CCCcccccHHHHhccccccCCCCCCCCCC
Confidence 1234589999999999999876 555543 35555544444321110000 00111000 0 0113579999
Q ss_pred chhHHHHHHhcCC--C-ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCc
Q 013959 249 GLAGILQVLLHFP--L-SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSD 325 (433)
Q Consensus 249 G~aGI~~~L~~l~--~-~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~ 325 (433)
|.+||+++|+.++ . ++.+.+.+.++++....... ++|. ....+||||.+|++..++.+++ .++ +
T Consensus 245 G~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-------~~~~~lChG~~G~~~~l~~~~~--~~~-~ 311 (382)
T cd04793 245 GTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKK---QLSK-------LISPTLCHGLAGLLFIFYLLYK--DTN-T 311 (382)
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChh---hhcc-------CCCCCcCccHHHHHHHHHHHHH--HhC-C
Confidence 9999999998875 3 55667777777766543221 2221 1124899999999999999999 898 9
Q ss_pred HHHHHHHHHHHHHHHHc----C---C------------CCCCcccccchhHHHHHHHHHHHh
Q 013959 326 REFRDAAIEAGEVLWKN----G---L------------VKKVGLADGAAGNAYAFLSLYRLT 368 (433)
Q Consensus 326 ~~~~~~a~~a~~~~~~~----g---~------------~~~~~LCHG~aG~~~~Ll~~~~~t 368 (433)
+++.+.+++.++.++++ + + ...++||.|.+|+++.|++++...
T Consensus 312 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 312 NEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred cHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 99998888777655432 1 1 123899999999999999998643
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.81 E-value=1.3e-19 Score=180.30 Aligned_cols=291 Identities=20% Similarity=0.217 Sum_probs=176.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHH-HHHHHHHHHHHHHhcc
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQEL-LLSAEIIDTCASVVRD 121 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~-~~a~~~i~~~~~~~~~ 121 (433)
.+.+|.+.+.++.+.+....-.... .+.|+|+|.+|+++++..+++.++++.+. +....+...+.+....
T Consensus 26 ~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 96 (355)
T PF05147_consen 26 GDPKYLDLAEKLLEKLINYIENNPY---------DSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISN 96 (355)
T ss_dssp THHHHHHHHHHHHHHHCCCHHCC-----------S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhccC---------cCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhh
Confidence 4567999999988888775322111 16899999999999999999988877666 3334444433333322
Q ss_pred CCCc--ccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCC--CCCC--C---CCCccccccchHHHH
Q 013959 122 STRH--VTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGP--EEGG--F---GMSYDLLYGRAGFLW 192 (433)
Q Consensus 122 ~~~~--~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~--~~~~--~---~~~~D~l~G~aG~l~ 192 (433)
... .+++.|.+|++.++..+++.+++++..+.+.+.+..++ +....... .+.. + .....+-+|.+|+++
T Consensus 97 -~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~ 174 (355)
T PF05147_consen 97 -DSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLL-ESIINDDPSENQIGSEWKEGFINLGFAHGIAGILY 174 (355)
T ss_dssp -T--GGCSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCC-CHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHH
T ss_pred -cccccchhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HHHhhcccccCCCccccCCCCccCCccccHHHHHH
Confidence 222 78999999997777667777776654433333222221 11111000 0000 0 113455789999999
Q ss_pred HHHHHH-hHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccc-ccc----cCCCccchhHHHHHHhcCC--C-C
Q 013959 193 AALFVN-KHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWH-GTR----YWGAANGLAGILQVLLHFP--L-S 263 (433)
Q Consensus 193 ~Ll~l~-~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~----~~G~aHG~aGI~~~L~~l~--~-~ 263 (433)
+|..++ +.++++.+ ...++++.+.+.+...... ..|... ... ..+||||.+||+.++.++. . +
T Consensus 175 ~L~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~ 246 (355)
T PF05147_consen 175 ALLRLYKKGTKDPEY-LKLIEQILNFLLKHFNTDD-------GGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDD 246 (355)
T ss_dssp HHCHCCHHT--HHHH-HHCHHHHHHHHHHC--TGC-------CT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-
T ss_pred HHHHhhhcccCchhH-HHHHHHHHHHHHHhcCccc-------CCCCCCCCccccccccccccCcHHHHHHHHHHHHhhch
Confidence 999998 46655433 2355666666554432111 113321 111 5899999999999998775 3 4
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcC
Q 013959 264 EEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNG 343 (433)
Q Consensus 264 ~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g 343 (433)
+.+.+.++++++...+... .+. ..+.|||.+|++..+..+++ .++ ++.+.+.+++..+.+.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~----~~~---------~~~lCHG~aG~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~ 310 (355)
T PF05147_consen 247 EEYDEEAEQALESILQKGL----FLN---------NPSLCHGTAGILEILLDLYK--YTG-DEEYKELANKLIQKLLSYY 310 (355)
T ss_dssp HHHHHHHHHHHHHHHHH-T----CTT---------SS-STTSHHHHHHHHHHHHH--HH---HCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHccc----cCC---------CCceeCchHHhHHHHHHHHH--HcC-CHHHHHHHHHHHHHHHHHh
Confidence 5667777777777655221 111 13799999999999999999 887 8878887877766554322
Q ss_pred C-----------CCCCcccccchhHHHHHHHHHHHh
Q 013959 344 L-----------VKKVGLADGAAGNAYAFLSLYRLT 368 (433)
Q Consensus 344 ~-----------~~~~~LCHG~aG~~~~Ll~~~~~t 368 (433)
. ....+|+.|.+|+++.|+++....
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~ 346 (355)
T PF05147_consen 311 DENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPD 346 (355)
T ss_dssp CC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGG
T ss_pred hccccccCCCCCCCCCCccccHHHHHHHHHHhcCCC
Confidence 1 123899999999999998775433
No 15
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.79 E-value=9e-18 Score=174.23 Aligned_cols=280 Identities=17% Similarity=0.252 Sum_probs=196.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccC
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS 122 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~ 122 (433)
.+..|.+.|.+....+....-. +..|++.+.|+|.+|+.|++..++.+++|....+-|.+.+..+...+..
T Consensus 664 gk~~Y~~ia~~~L~~~~~sv~~--------~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~- 734 (963)
T COG4403 664 GKDYYKEIAIKALQDSRKSVNN--------NLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQK- 734 (963)
T ss_pred ChHHHHHHHHHHHHHHHHhhhh--------ccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhh-
Confidence 4567788888777776654222 3334789999999999999999999999988888888888866655543
Q ss_pred CCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhC
Q 013959 123 TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLG 202 (433)
Q Consensus 123 ~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~ 202 (433)
+..+++.+|.+|++.++..+|+.+..|+.++.++.-...+. +..+.+...+ ..-..+-+|.+|++++|+.+|+.++
T Consensus 735 ~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~-~~~v~~d~s~---~~l~gfshg~sgi~~tL~~ly~~T~ 810 (963)
T COG4403 735 SKDPDFINGLAGVICVLVSIYKLTDEPKFLELAISLGRILM-EKIVGNDSSE---TVLLGFSHGASGIILTLLKLYEATG 810 (963)
T ss_pred ccCcchhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HHhhcccccc---ceecccccchHHHHHHHHHHHHhcC
Confidence 45699999999998888889999888876655444333332 1122211110 1235667899999999999999999
Q ss_pred CCCCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcC---CCChhHHHHHHHHHHHHHh
Q 013959 203 AGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHF---PLSEEDAEDVKGTLRYMMS 279 (433)
Q Consensus 203 ~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l---~~~~~~~~~i~~~l~~l~~ 279 (433)
++.++. .+++ ++. +++. .+.. ..+-||||++||+.+-+.+ +.++...+.++.++.+...
T Consensus 811 e~~l~~-~i~e----~~~----~Er~--------~f~~-~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~ 872 (963)
T COG4403 811 EESLLK-KIKE----LLS----YERM--------KFSD-KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIIN 872 (963)
T ss_pred cHHHHH-HHHH----HHH----HHHH--------HHHH-HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHh
Confidence 875532 2222 221 1110 0001 2457899999999753322 2355567889999999887
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH--------HcCCCC---CC
Q 013959 280 NRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLW--------KNGLVK---KV 348 (433)
Q Consensus 280 ~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~--------~~g~~~---~~ 348 (433)
... || .+.|||+.|++-.++.+++ ++. +++.++.|...+.... ..|... +.
T Consensus 873 ~gl---gn------------~~~Chgdfg~ie~l~~~a~--~l~-~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~ 934 (963)
T COG4403 873 NGL---GN------------DSLCHGDFGIIEVLLHYAK--ILS-DSELLESANKLANELVSKAITYGINQGLNHANESF 934 (963)
T ss_pred ccC---CC------------ccccccchHHHHHHHHHHH--HhC-CHHHHHHHHHHHHHHHHhhccccccccCCCccchh
Confidence 554 23 2699999999999999999 999 9999998887764432 333321 37
Q ss_pred cccccchhHHHHHHHHHHHhCCh
Q 013959 349 GLADGAAGNAYAFLSLYRLTGET 371 (433)
Q Consensus 349 ~LCHG~aG~~~~Ll~~~~~t~~~ 371 (433)
|||.|.+|++|-|+++...--.|
T Consensus 935 glm~GvtGigY~lLR~~~p~~vp 957 (963)
T COG4403 935 GLMNGVTGIGYSLLRISSPKFVP 957 (963)
T ss_pred HHHhhhHHHHHHHHHHhCcccCC
Confidence 99999999999999988764443
No 16
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.54 E-value=4.6e-13 Score=124.86 Aligned_cols=260 Identities=18% Similarity=0.246 Sum_probs=168.5
Q ss_pred CCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhC
Q 013959 123 TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLG 202 (433)
Q Consensus 123 ~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~ 202 (433)
..+.++++|..|+..++..+++.++|...+..+++.+...... .. .....-|+-|.||+..+-..+++..+
T Consensus 60 ~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~-~~--------s~~~vTFLCG~aGv~avgAvia~~l~ 130 (403)
T KOG2787|consen 60 VRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVA-SR--------SSRRVTFLCGRAGVCAVGAVIAHKLG 130 (403)
T ss_pred CcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-cc--------ccCceEEECCCcchhHHHHHHHHHhc
Confidence 3567899999999888888999999988787777766655321 11 12457789999999988888898888
Q ss_pred CCCCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCC--CChh-H-HHHHHHHHHHHH
Q 013959 203 AGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP--LSEE-D-AEDVKGTLRYMM 278 (433)
Q Consensus 203 ~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~--~~~~-~-~~~i~~~l~~l~ 278 (433)
++..++..+.++ +.-. ..+.+ .| + -+=.|-+|.+|+++-+. +-++ . .+.|++.++-++
T Consensus 131 ~~~~~~~~l~~f----~~l~-~~~~d---lp------~----ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~ 192 (403)
T KOG2787|consen 131 EEEELDDCLARF----LSLR-LCSSD---LP------D----ELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAIL 192 (403)
T ss_pred cHHHHHHHHHHH----Hhcc-cCCcc---cc------H----HHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHH
Confidence 874433333322 2111 11111 11 1 12348899999877553 2111 0 122333333222
Q ss_pred hccC--CCCCCCCCCC--CCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCC--------
Q 013959 279 SNRF--PQSGNYPVSE--GNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVK-------- 346 (433)
Q Consensus 279 ~~~~--~~~gnwp~~~--~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~-------- 346 (433)
+-.. ...+|=|.+. .-..+++..=-||-+||...++.-.- -.. ++.+.+++...++.+.+..+..
T Consensus 193 ~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L--~~d-~~~~~~dVK~sldym~~~rfpsGNyP~s~~ 269 (403)
T KOG2787|consen 193 TSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTL--KVD-QPALLKDVKGSLDYMIQNRFPSGNYPSSEG 269 (403)
T ss_pred HHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCC--CCc-chhHHHhhhhHHHHHHHccCCCCCCCcccC
Confidence 2110 0123322211 01123445568999999998776322 222 5678888988888887765421
Q ss_pred ---C--CcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHcc
Q 013959 347 ---K--VGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLL 421 (433)
Q Consensus 347 ---~--~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~ 421 (433)
+ ..+|||..|.++.|..+|+++++++|++.|.+.++.+.++.. + ...+|+..|+||.+|.+|.++
T Consensus 270 ~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl-------L---kkg~GichGvaGNaYvFLsLy 339 (403)
T KOG2787|consen 270 NKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL-------L---KKGVGICHGVAGNAYVFLSLY 339 (403)
T ss_pred CCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh-------h---hcCCcccccccCchhhhHhHH
Confidence 1 489999999999999999999999999999999988765431 1 123799999999999999876
Q ss_pred C
Q 013959 422 E 422 (433)
Q Consensus 422 ~ 422 (433)
.
T Consensus 340 R 340 (403)
T KOG2787|consen 340 R 340 (403)
T ss_pred H
Confidence 5
No 17
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.00 E-value=0.068 Score=51.71 Aligned_cols=246 Identities=18% Similarity=0.097 Sum_probs=126.4
Q ss_pred HHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCc-chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCC
Q 013959 92 CLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCG-RGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPA 170 (433)
Q Consensus 92 l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G-~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~ 170 (433)
++++++.|+|++|++....+....+..- .-..-.+.. .+|.. +..+++.++++++++..++....+..+ +
T Consensus 45 v~~~~eAT~d~~yl~~l~~~~d~~i~~~---g~~~~~id~i~~g~~--L~~L~e~T~~~~Yl~~a~~~a~~l~~~---~- 115 (357)
T COG4225 45 VARAYEATGDAEYLDYLKTWFDEQIDEG---GLPPRNIDHIAAGLT--LLPLYEQTGDPRYLEAAIKLASWLVHE---P- 115 (357)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhhhccC---CCCccchhhhccCce--eeehhhhhCCHHHHHHHHHHHHHHhhC---c-
Confidence 3578889999999998888877655421 011111122 12322 234688999988776555443333211 1
Q ss_pred CCCCCC---CCCCcc--ccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCccc-cccc----
Q 013959 171 GPEEGG---FGMSYD--LLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMY-RWHG---- 240 (433)
Q Consensus 171 ~~~~~~---~~~~~D--~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~---- 240 (433)
.+.+++ ....++ ++.|.==....++++-+.++++.++++.+.++..+.- .+.+. ...+++ .|..
T Consensus 116 Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~----~l~Dp--~TGL~YH~wd~~~~~ 189 (357)
T COG4225 116 RTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEK----YLRDP--ETGLYYHGWDEDGTM 189 (357)
T ss_pred ccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HccCC--CcCceEEeeccCCCC
Confidence 222331 001111 1234322234677777888888776655554432211 11111 111221 1221
Q ss_pred ---cccCC----CccchhHHHHHHhcC----CC-Ch---hHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccC
Q 013959 241 ---TRYWG----AANGLAGILQVLLHF----PL-SE---EDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHG 305 (433)
Q Consensus 241 ---~~~~G----~aHG~aGI~~~L~~l----~~-~~---~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG 305 (433)
.+..| ||-|++=++.+|..+ .. .+ ++.+.++..++-+.+.|+ +.|-|..+.++......-=--|
T Consensus 190 ~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd-e~GlW~tiLDd~~~~sy~EsSa 268 (357)
T COG4225 190 PWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD-ESGLWHTILDDGRPGSYLESSA 268 (357)
T ss_pred ccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc-cccchhhhhccCCCCCchhhhH
Confidence 12344 444444444444433 22 11 245667777888888777 5899977664321111122458
Q ss_pred ChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH----cCCC---CCCcccccch
Q 013959 306 ATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWK----NGLV---KKVGLADGAA 355 (433)
Q Consensus 306 ~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~----~g~~---~~~~LCHG~a 355 (433)
++||+.+++..-+.-++ ++++...+++|.+.+++ .|.. .-.+.|++++
T Consensus 269 Sa~faYallkgi~~G~l--~~~~~~~~~kA~~aLl~~i~~~g~~g~vs~~~~~~~~~ 323 (357)
T COG4225 269 SAGFAYALLKGINLGIL--DPEYAPVAEKALDALLGHIDEEGEVGGVSLGTIVGHDL 323 (357)
T ss_pred HHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhcccccccceeecCccccccc
Confidence 89999999985552233 45655667777665543 3321 2267777653
No 18
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.22 E-value=1.4 Score=43.42 Aligned_cols=240 Identities=16% Similarity=0.033 Sum_probs=115.6
Q ss_pred HHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccC-C
Q 013959 91 ICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERAL-P 169 (433)
Q Consensus 91 ~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l-~ 169 (433)
-+.++++.|+|++|++.+.+..+........ ....+ .-..|..+ ..+++.++++++.+...+....++.+... +
T Consensus 33 gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~-~~~~d--~~~~g~~~--~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~ 107 (336)
T PF07470_consen 33 GLLEAYEYTGDERYLDYAERWADRFIEEDGS-DYNLD--DHDIGFLL--LDLYERTGDEKYKDAAIQAADWLLARRPRTS 107 (336)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHT-TTSCC--GTTHHHHH--HHHHHHH-THHHHHHHHHHHHHHHHTSCBEC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhccCC-ccCCc--hhhhHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 3558888999999999999988877765422 11111 11224332 23678889877665554444424321111 1
Q ss_pred CCCCCCC-CCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccccccc-----
Q 013959 170 AGPEEGG-FGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRY----- 243 (433)
Q Consensus 170 ~~~~~~~-~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~----- 243 (433)
.+..... .....=++.+.-=.+..|....+.++++++++.+++.+....-. .-+..++.. .-.|.....
T Consensus 108 ~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~----~~d~~tGl~-~h~~~~~~~~~~s~ 182 (336)
T PF07470_consen 108 DGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKY----LYDPETGLY-YHGYTYQGYADWSD 182 (336)
T ss_dssp TGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHH----HB-TTTSSB-ESEEETTSSSTTST
T ss_pred CCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHh----ccCCCCCce-eeccCCCCCcCccc
Confidence 1110000 01111234555445677777788899876654433333221111 110001111 001111111
Q ss_pred CCCccchhHHHHHHhcCC--C------ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHH
Q 013959 244 WGAANGLAGILQVLLHFP--L------SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCK 315 (433)
Q Consensus 244 ~G~aHG~aGI~~~L~~l~--~------~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~ 315 (433)
..|+-|.+=.++.|.+.. + .+.+++.+++.++.+.+.+. ++|.|+...........-=--|++.++.+++.
T Consensus 183 ~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 183 SFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWYQDLDDPDPGNYRETSATAMFAYGLLR 261 (336)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHH
T ss_pred ccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcceecCCCCCCCcccHHHHHHHHHHHHH
Confidence 123333332223333322 1 13356677788888777666 48888655422110111112355666666665
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHHHHHc
Q 013959 316 ASQVSVFPSDREFRDAAIEAGEVLWKN 342 (433)
Q Consensus 316 ~~~~~~~~~~~~~~~~a~~a~~~~~~~ 342 (433)
..+...++ .+.+.+.++++.+.+.+.
T Consensus 262 gi~~g~~d-~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 262 GIRLGLLD-PEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHTTSST-HHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCc-cHHHHHHHHHHHHHHHhC
Confidence 32211455 788999999999888777
No 19
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.69 E-value=2.6 Score=42.16 Aligned_cols=258 Identities=14% Similarity=0.041 Sum_probs=134.0
Q ss_pred CCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhcc-C-CCccccc--Ccc---hH--H------HHHHHHH
Q 013959 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-S-TRHVTFL--CGR---GG--I------YAIGAVV 142 (433)
Q Consensus 78 ~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~-~-~~~~~~~--~G~---~G--i------~~~~~~l 142 (433)
...+| ..+=.+++|+.++.+++++++++.|.+.++-+.+.... . ..-...+ .|. .+ + +..+..+
T Consensus 49 ~k~~~-~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~ 127 (384)
T cd00249 49 DRRLW-LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQA 127 (384)
T ss_pred CCeEE-EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHH
Confidence 34444 34557788999999999999999999998888775532 1 1111111 121 01 1 1122346
Q ss_pred HHHhCChhHHHHHHHHHHHHHHhccCC-CCCCCCCCCCCccccccchHH---HHHHHHHHhHhCCCCCchhhHHHHHHHH
Q 013959 143 ANRMGDRSRRDFFLNLFLEIAQERALP-AGPEEGGFGMSYDLLYGRAGF---LWAALFVNKHLGAGTLPNELLMPIVDAV 218 (433)
Q Consensus 143 ~~~~g~~~~~~~~~~~i~~~~~~~~l~-~~~~~~~~~~~~D~l~G~aG~---l~~Ll~l~~~~~~~~~l~~~i~~~~~~l 218 (433)
++.++++++++.+.+.+..+. +.... .+..-...+.....+.+..+. +.+++.+++.++++.+++ .++++.+.+
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~-~A~~l~~~~ 205 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLE-RRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLD-RADEIADLI 205 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHH-HHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHH
Confidence 778888876654433333322 21111 110000000001112233333 356888888888876643 555555555
Q ss_pred HhccccccccC--CCCCcccccc--cc-ccCCCccchhHHHHHHhcCC-C--ChhHHHHHHHHHHHHHhcc-CCCCCCCC
Q 013959 219 LAGGRAGATAN--TACPLMYRWH--GT-RYWGAANGLAGILQVLLHFP-L--SEEDAEDVKGTLRYMMSNR-FPQSGNYP 289 (433)
Q Consensus 219 l~~~~~~~~~~--~~~~~~~~~~--~~-~~~G~aHG~aGI~~~L~~l~-~--~~~~~~~i~~~l~~l~~~~-~~~~gnwp 289 (433)
.+......... ......|... .. ..+--+|..- .++.|++++ . ++++.+.+++.+++..+.+ +++.|.|.
T Consensus 206 ~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e-~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~ 284 (384)
T cd00249 206 LDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFE-WAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLY 284 (384)
T ss_pred HHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEE
Confidence 54221100000 0000001000 00 1111234432 355666654 2 5668899999999888765 45556676
Q ss_pred C-CCCC----CCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 013959 290 V-SEGN----PRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGL 344 (433)
Q Consensus 290 ~-~~~~----~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~ 344 (433)
. ..+. ..+...-|++.-.-. +++.+++ +++ ++++.+.+.+..+.+++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~w~~~E~~~--a~~~l~~--~tg-d~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 285 YSFLDDGGLLEDDDKRWWPQTEALK--AALALAG--ITG-DERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred EeeECCCCCcccccccccHHHHHHH--HHHHHHH--hcC-CHHHHHHHHHHHHHHHHhcC
Confidence 5 2221 112335677554433 4455667 788 99999999999888877554
No 20
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=1.9 Score=45.90 Aligned_cols=240 Identities=15% Similarity=0.109 Sum_probs=132.9
Q ss_pred CCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccC-------cchHHHHH--HHHHHHHhCC
Q 013959 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLC-------GRGGIYAI--GAVVANRMGD 148 (433)
Q Consensus 78 ~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~-------G~~Gi~~~--~~~l~~~~g~ 148 (433)
..-||+ .+.++.+|...|..|+|+.|++.|.++++-+.+...... .+|++ |.-|-+++ ..-+...+|+
T Consensus 269 EKMLyD-nA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~--ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~ 345 (667)
T COG1331 269 EKMLYD-NALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPE--GGFYSSLDADSDGEEGKYYTWSVEELKEVLGE 345 (667)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CceeecccccCcccCCCeeecCHHHHHHHhcc
Confidence 344676 688999999999999999999999999998887663211 12222 22222111 1112222231
Q ss_pred h------------------------------------hHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHH-
Q 013959 149 R------------------------------------SRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFL- 191 (433)
Q Consensus 149 ~------------------------------------~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l- 191 (433)
+ +.++...+++...- +...+ .-.+.-++++.-|.+
T Consensus 346 d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R-~~R~~-------P~~Ddkvlt~wNglmi 417 (667)
T COG1331 346 DAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAR-EKRKQ-------PSRDDKVLTDWNGLMI 417 (667)
T ss_pred cHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHH-HhCCC-------CCCCcceeeccHHHHH
Confidence 0 01122222222221 11221 112334567766654
Q ss_pred HHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccc-c-cccCCCccchhHHHHHHhcCC---CChhH
Q 013959 192 WAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWH-G-TRYWGAANGLAGILQVLLHFP---LSEED 266 (433)
Q Consensus 192 ~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~-~~~~G~aHG~aGI~~~L~~l~---~~~~~ 266 (433)
.+|+..+..++++.+++ .++++++.+.+.-.. + .+.-.|. | ..+.|+.-=.+=.+++|+.++ .+..+
T Consensus 418 ~aLa~a~~~~~d~~~l~-~A~~~~~fi~~~l~~---~----rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~y 489 (667)
T COG1331 418 AALAEAGRVLGDPEYLE-AAERAADFILDNLYV---D----RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489 (667)
T ss_pred HHHHHHHHHcCChHHHH-HHHHHHHHHHHhhcc---c----chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHH
Confidence 67777888889887764 677777777764321 0 0111222 1 134555555555666666665 36678
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC--------CCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 013959 267 AEDVKGTLRYMMSNRFPQSGNYPVSEG--------NPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEV 338 (433)
Q Consensus 267 ~~~i~~~l~~l~~~~~~~~gnwp~~~~--------~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~ 338 (433)
++.+++..+-.+..+....|.|.+..+ +....-..-=-|.+=++..++.++. +++ +.+|.+.|.++++.
T Consensus 490 L~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~--ltg-~~~y~e~A~~~L~a 566 (667)
T COG1331 490 LEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSL--LTG-DARYLEAAEDILQA 566 (667)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHh--hcC-chhHHHHHHHHHHH
Confidence 888877777666644332344644221 0000001122234556677888888 899 99999999888765
Q ss_pred H
Q 013959 339 L 339 (433)
Q Consensus 339 ~ 339 (433)
.
T Consensus 567 ~ 567 (667)
T COG1331 567 F 567 (667)
T ss_pred H
Confidence 4
No 21
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.32 E-value=3.1 Score=41.02 Aligned_cols=215 Identities=18% Similarity=0.083 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhcc-
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD- 121 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~- 121 (433)
.+++|++.|++.++..++..-... .+-+=..|..+ ..+++.|++++|++.+.+..+.++.....
T Consensus 42 gd~~~~~~a~~~~~~~~~~~~~~~-------------~~d~~~~g~~~--~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~ 106 (336)
T PF07470_consen 42 GDERYLDYAERWADRFIEEDGSDY-------------NLDDHDIGFLL--LDLYERTGDEKYKDAAIQAADWLLARRPRT 106 (336)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTT-------------SCCGTTHHHHH--HHHHHHH-THHHHHHHHHHHHHHHHTSCBE
T ss_pred CCHHHHHHHHHHHHHHHhccCCcc-------------CCchhhhHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Confidence 455788888888888877532210 01111344444 55888999999999999988866654321
Q ss_pred CCC---------cccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCC-CCCC-----CCCCCCCcc--cc
Q 013959 122 STR---------HVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALP-AGPE-----EGGFGMSYD--LL 184 (433)
Q Consensus 122 ~~~---------~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~-~~~~-----~~~~~~~~D--~l 184 (433)
... ...+.-+..=..-++...++.+||+++++.+.+++........-+ .+-. ..+....-+ .-
T Consensus 107 ~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~Ws 186 (336)
T PF07470_consen 107 SDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWS 186 (336)
T ss_dssp CTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BH
T ss_pred CCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCc
Confidence 110 011222222123345566889999988888887776665221111 1110 000000112 22
Q ss_pred ccchHHHHHHHHHHhHhCCCC----CchhhHHHHHHHHHhccccccccCCCCCcccccc-ccc---cCCCccchhHHHHH
Q 013959 185 YGRAGFLWAALFVNKHLGAGT----LPNELLMPIVDAVLAGGRAGATANTACPLMYRWH-GTR---YWGAANGLAGILQV 256 (433)
Q Consensus 185 ~G~aG~l~~Ll~l~~~~~~~~----~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~---~~G~aHG~aGI~~~ 256 (433)
-|.+=+++++..+++.++++. .+...++++++.+.+ +.+. ...|.|. +.+ ..-=+=|++.++++
T Consensus 187 RG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~----~q~~----~G~w~~~~~~~~~~~~~etSatA~~a~~ 258 (336)
T PF07470_consen 187 RGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALAR----YQDE----DGLWYQDLDDPDPGNYRETSATAMFAYG 258 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT----TSTT----TSBEBSBTTTTTTTS-BEHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHh----cCCC----CCCcceecCCCCCCCcccHHHHHHHHHH
Confidence 244445555666666654421 111233444444432 2111 1123332 111 12225677778888
Q ss_pred Hhc---CC-C-ChhHHHHHHHHHHHHHhc
Q 013959 257 LLH---FP-L-SEEDAEDVKGTLRYMMSN 280 (433)
Q Consensus 257 L~~---l~-~-~~~~~~~i~~~l~~l~~~ 280 (433)
|++ .+ . .+.+.+.++++++.+.+.
T Consensus 259 l~~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 259 LLRGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 865 34 4 356889999999999887
No 22
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.11 E-value=0.61 Score=45.32 Aligned_cols=185 Identities=18% Similarity=0.085 Sum_probs=97.2
Q ss_pred HHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCC-------cc--cccCcchHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 013959 90 FICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR-------HV--TFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFL 160 (433)
Q Consensus 90 l~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~-------~~--~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~ 160 (433)
+.|.-|++.|++++|++.+.++.+.+....+.+.. .+ -+..|.-=...+++.+++.+|++++++..+.++.
T Consensus 86 ~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~ 165 (357)
T COG4225 86 LTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFS 165 (357)
T ss_pred ceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566888999999999888877766654321111 00 0111111011234557889999999988877665
Q ss_pred HHHHhccCCC--------CCCCCC---C-CCCcc--ccc--cchHHHHHHHHHHhHhCCCCCchhhH----HHHHHHHHh
Q 013959 161 EIAQERALPA--------GPEEGG---F-GMSYD--LLY--GRAGFLWAALFVNKHLGAGTLPNELL----MPIVDAVLA 220 (433)
Q Consensus 161 ~~~~~~~l~~--------~~~~~~---~-~~~~D--~l~--G~aG~l~~Ll~l~~~~~~~~~l~~~i----~~~~~~ll~ 220 (433)
-... .+.. +.++.+ | +...+ .+. |.+=+..++..+-+..+.+.-.+..+ ..++..|++
T Consensus 166 ~~~~--~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r 243 (357)
T COG4225 166 LHEK--YLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR 243 (357)
T ss_pred HHHH--HccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4431 1210 111111 0 01111 111 33334455555555555542112233 333444443
Q ss_pred ccccccccCCCCCcccccccc--c-cCCCccchhHHHHHHhc---CC-CChhHHHHHHHHHHHHHhccCC
Q 013959 221 GGRAGATANTACPLMYRWHGT--R-YWGAANGLAGILQVLLH---FP-LSEEDAEDVKGTLRYMMSNRFP 283 (433)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~--~-~~G~aHG~aGI~~~L~~---l~-~~~~~~~~i~~~l~~l~~~~~~ 283 (433)
. .+. ..++..-.++ + +.-=+-|++||+++|++ .+ +.+++...++++++-++....+
T Consensus 244 ~----Qde---~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 244 Y----QDE---SGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred h----hcc---ccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 2 211 1222221111 1 12226799999999998 56 4677778899999888876665
No 23
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=95.06 E-value=0.29 Score=51.56 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=86.2
Q ss_pred cchhHHHHHHhcCCCChhHHHHHHHHHHHHHhccCCCCCC---CCCCC--CCCCCccc----ccccCChhHHHHHHHHhc
Q 013959 248 NGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGN---YPVSE--GNPRDKLV----QWSHGATGVAITLCKASQ 318 (433)
Q Consensus 248 HG~aGI~~~L~~l~~~~~~~~~i~~~l~~l~~~~~~~~gn---wp~~~--~~~~~~~~----~WChG~~Gi~l~~l~~~~ 318 (433)
|=.+|.++++... -+++.++.+.+.++.+.+.|.+ +|. ++... ........ -||.| -++.+++..++
T Consensus 64 ~wl~a~a~~~~~~-~D~~l~~~~d~~V~~l~~~Q~~-dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~--~ll~gl~~~y~ 139 (520)
T PF07944_consen 64 KWLEAAAYAYAYT-GDPELKAKADEIVDELAAAQQP-DGYLGTYPEERNFNPDDRWAPDMHELYCLG--KLLEGLIDYYE 139 (520)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhccC-CceecccccccccccccCCCCCccceehHh--HHHHHHHHHHH
Confidence 4455655555432 2667788999999999888775 442 23222 11111112 34433 24567778888
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHc--CCCCC---CcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 013959 319 VSVFPSDREFRDAAIEAGEVLWKN--GLVKK---VGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSF 383 (433)
Q Consensus 319 ~~~~~~~~~~~~~a~~a~~~~~~~--g~~~~---~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~ 383 (433)
+++ +++.++.+.+.++.+.+. .+... ..++.|..|+.+.|.++|+.|+|++|++.|+.+.+.
T Consensus 140 --~tG-~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 140 --ATG-NERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred --HHC-cHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889 999999999999877221 12211 345558888889999999999999999999887654
No 24
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=94.61 E-value=0.39 Score=48.21 Aligned_cols=138 Identities=18% Similarity=0.115 Sum_probs=87.6
Q ss_pred cchhHHHHHHhcCC---CChhHHHHHHHHHHHHHhccCC-CCCCCCCCCC-CCCC-cccccccCChhHHHHHHHHhcCCC
Q 013959 248 NGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFP-QSGNYPVSEG-NPRD-KLVQWSHGATGVAITLCKASQVSV 321 (433)
Q Consensus 248 HG~aGI~~~L~~l~---~~~~~~~~i~~~l~~l~~~~~~-~~gnwp~~~~-~~~~-~~~~WChG~~Gi~l~~l~~~~~~~ 321 (433)
...+=.+++++.++ -++++++.++++++++.+.... +.|.|..... +... ....-++.-.=++.++..+++ +
T Consensus 53 ~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~--a 130 (384)
T cd00249 53 WLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAK--V 130 (384)
T ss_pred EEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHH--h
Confidence 34444566776665 2677899999999999885543 3366643321 1100 000124444455667778888 8
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCC-----CC-----CCcccccchhH---HHHHHHHHHHhCChHHHHHHHHHHHHHHhhh
Q 013959 322 FPSDREFRDAAIEAGEVLWKNGL-----VK-----KVGLADGAAGN---AYAFLSLYRLTGETIYVERANAFSSFLYHNA 388 (433)
Q Consensus 322 ~~~~~~~~~~a~~a~~~~~~~g~-----~~-----~~~LCHG~aG~---~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~ 388 (433)
++ ++++++.|+++++.+.+.-. .. +..--.+.-+. ++.++.+++.|++++|.++|+++.+.+....
T Consensus 131 t~-d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~ 209 (384)
T cd00249 131 GG-DPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRF 209 (384)
T ss_pred cC-CHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 98 99999999998876654321 00 00111222222 4568899999999999999999888877654
No 25
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=3.3 Score=44.14 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=80.7
Q ss_pred CCCccccChHHHH-HHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcch---HH---HHH----HHHHHHH
Q 013959 77 MDPTLYTGLLGTA-FICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRG---GI---YAI----GAVVANR 145 (433)
Q Consensus 77 ~~~~LY~G~~Gia-l~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~---Gi---~~~----~~~l~~~ 145 (433)
.+.-.+.+.-|.+ ..|++.++++++++|++.|.+..+.+.+......-...++.|.+ |. |++ +.-+++.
T Consensus 404 ~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~ 483 (667)
T COG1331 404 RDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEA 483 (667)
T ss_pred CCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHh
Confidence 4555777766665 45888999999999999999999888776643211233344432 11 222 2336888
Q ss_pred hCChhHHHHHHHHHHHHHHhccCC-C-CCC-----------CCCCCCCccccccchHHHHHHHHHHhHhCCCCCc
Q 013959 146 MGDRSRRDFFLNLFLEIAQERALP-A-GPE-----------EGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLP 207 (433)
Q Consensus 146 ~g~~~~~~~~~~~i~~~~~~~~l~-~-~~~-----------~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l 207 (433)
+++.++++.+.+...+.+.. ... . |+- ......+..+.+|.|=++.+|+.|...+++..+.
T Consensus 484 t~d~~yL~~A~~L~~~~i~~-f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~ 557 (667)
T COG1331 484 TGDLAYLEKAIELADEAIAD-FWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYL 557 (667)
T ss_pred hCcHHHHHHHHHHHHHHHHH-hcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHH
Confidence 88888887776655555421 111 0 100 0001122334578899999999999999987553
No 26
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=93.31 E-value=0.73 Score=44.26 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=78.3
Q ss_pred hhHHHHHHhcCC---CChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc--ccccccC-ChhHHHHHHHHhcC----
Q 013959 250 LAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDK--LVQWSHG-ATGVAITLCKASQV---- 319 (433)
Q Consensus 250 ~aGI~~~L~~l~---~~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~--~~~WChG-~~Gi~l~~l~~~~~---- 319 (433)
+.--+-.|++++ -++.+.+.+.++++|+++.|.+ +|.||...+....+ ...+|=. ...++..+..+++.
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQyp-nGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYP-NGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCC-CCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 334445667665 2567899999999999999988 89998765322222 2345533 33444455444430
Q ss_pred CCCCC--cHHHHHHHHHHHHHHHHcCCC----------------------C--C-Ccccccc-hhHHHHHHHHHHHhCCh
Q 013959 320 SVFPS--DREFRDAAIEAGEVLWKNGLV----------------------K--K-VGLADGA-AGNAYAFLSLYRLTGET 371 (433)
Q Consensus 320 ~~~~~--~~~~~~~a~~a~~~~~~~g~~----------------------~--~-~~LCHG~-aG~~~~Ll~~~~~t~~~ 371 (433)
..... .+++...+.++++.+++.... + + ++||-+- .|++.+|+.+.+. ++
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p--s~ 202 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNP--SA 202 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCC--CH
Confidence 01110 145666777777776554321 1 1 4666554 4666666666543 45
Q ss_pred HHHHHHHHHHHHHHh
Q 013959 372 IYVERANAFSSFLYH 386 (433)
Q Consensus 372 ~~~~~a~~~~~~~~~ 386 (433)
++++.+.....|+-.
T Consensus 203 ~i~~ai~~A~~W~~~ 217 (290)
T TIGR02474 203 EIKEAIRAGVAWFDT 217 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666666544
No 27
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=93.02 E-value=8.3 Score=40.63 Aligned_cols=228 Identities=14% Similarity=0.081 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCccc-c-----------cCc------chH-HHHHHHHHHHH
Q 013959 85 LLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVT-F-----------LCG------RGG-IYAIGAVVANR 145 (433)
Q Consensus 85 ~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~-~-----------~~G------~~G-i~~~~~~l~~~ 145 (433)
+.|.++ ++..++|++..+.+.++|+.+.+..+.+. -++ + +.. ..| ++..+...++.
T Consensus 66 l~a~a~----~~~~~~D~~l~~~~d~~V~~l~~~Q~~dG-Yl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~ 140 (520)
T PF07944_consen 66 LEAAAY----AYAYTGDPELKAKADEIVDELAAAQQPDG-YLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEA 140 (520)
T ss_pred HHHHHH----HHHHCCCHHHHHHHHHHHHHHHHhccCCc-eecccccccccccccCCCCCccceehHhHHHHHHHHHHHH
Confidence 455554 44458999999999999998887654211 111 0 111 012 33333345778
Q ss_pred hCChhHHHHHHHHHHHHHHhccCC-CCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhcccc
Q 013959 146 MGDRSRRDFFLNLFLEIAQERALP-AGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRA 224 (433)
Q Consensus 146 ~g~~~~~~~~~~~i~~~~~~~~l~-~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~ 224 (433)
+|+++.++-+. ++.+.+.+ ... .++. ........|..|+..+|..||+.++++++++ +++++.+..-.
T Consensus 141 tG~~~~L~v~~-k~ad~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~-----lA~~f~~~~~~ 209 (520)
T PF07944_consen 141 TGNERALDVAT-KLADWVYR-RLSRLGPE----PGQKMGYPEHGGINEALVRLYEITGDERYLD-----LAEYFVDQRGF 209 (520)
T ss_pred HCcHHHHHHHH-HHHHHHHH-HhccCCHH----HhhcccccccchHHHHHHHHHHHhCCHHHHH-----HHHHHHHHhCC
Confidence 89877554332 22222211 011 1110 0112344588899999999999999976653 34444432111
Q ss_pred c----cccCCCCCccccccccccCCCccch------hHHHHHHhcCCCChhHHHHHHHHHHHHHhccCCCCCCCCCC---
Q 013959 225 G----ATANTACPLMYRWHGTRYWGAANGL------AGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVS--- 291 (433)
Q Consensus 225 ~----~~~~~~~~~~~~~~~~~~~G~aHG~------aGI~~~L~~l~~~~~~~~~i~~~l~~l~~~~~~~~gnwp~~--- 291 (433)
. ....+..+. ++ .+.-..|.. +|.+- +.+..-++++++.++...+.+.....--.|...+.
T Consensus 210 ~~~~~~~~~d~~~~---~~--a~~~~~h~vr~~y~~~g~a~-~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~ 283 (520)
T PF07944_consen 210 DPYDLAYGQDHLPG---RH--ANTHIGHAVRAMYLYSGAAD-LYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEG 283 (520)
T ss_pred CCCchhhcCccCCC---cc--ccceeeEEEEhhhhhhHHHH-HHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCC
Confidence 0 000000010 11 123334554 23321 11112367788888888887755322112222111
Q ss_pred ---CCC-C-CCcc-cccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 013959 292 ---EGN-P-RDKL-VQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGE 337 (433)
Q Consensus 292 ---~~~-~-~~~~-~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~ 337 (433)
..+ . .+.. .+=.+.+.+...+-..+.+ .++ |++|.|.+++++-
T Consensus 284 E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~--~tg-d~~yaD~~Er~ly 332 (520)
T PF07944_consen 284 EHFGPPYDLPNRLAYAETCASVNMMKLARRLFR--LTG-DARYADYYERALY 332 (520)
T ss_pred ccCCCCCCCCcCCCCccccHHHHHHHHHHHHHh--cCC-CchHHHHHHHHHh
Confidence 000 0 0000 1234567777777777888 899 9999999999874
No 28
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=91.83 E-value=0.41 Score=45.93 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=73.3
Q ss_pred hHHHHHHhcCC---CChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcc--cccccCCh-hHHHHHHHHhcCCCCC-
Q 013959 251 AGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKL--VQWSHGAT-GVAITLCKASQVSVFP- 323 (433)
Q Consensus 251 aGI~~~L~~l~---~~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~--~~WChG~~-Gi~l~~l~~~~~~~~~- 323 (433)
.--+..|++++ -++.|++.+.++++|+++.|.| +|.||-.-+....+. ..+==++. +++..+..+++ ..+
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~--~~~~ 118 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAE--GKGD 118 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHC--T-TT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHh--hcCC
Confidence 34445677776 2677999999999999999888 899987543221111 22223333 44445555555 322
Q ss_pred ---CcH----HHHHHHHHHHHHHHHcCC----------------------CC--C-Ccccccc-hhHHHHHHHHHHHhCC
Q 013959 324 ---SDR----EFRDAAIEAGEVLWKNGL----------------------VK--K-VGLADGA-AGNAYAFLSLYRLTGE 370 (433)
Q Consensus 324 ---~~~----~~~~~a~~a~~~~~~~g~----------------------~~--~-~~LCHG~-aG~~~~Ll~~~~~t~~ 370 (433)
-++ ++.+.+.++++.+++..+ -+ + ++||-+- +|++.+|+.+.+.+
T Consensus 119 ~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps-- 196 (289)
T PF09492_consen 119 FAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS-- 196 (289)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--
Confidence 023 455555666666655432 02 2 6888775 56777777777777
Q ss_pred hHHHHHHHHHHHHHH
Q 013959 371 TIYVERANAFSSFLY 385 (433)
Q Consensus 371 ~~~~~~a~~~~~~~~ 385 (433)
+++++.++....|+-
T Consensus 197 ~~v~~aI~~AvaWl~ 211 (289)
T PF09492_consen 197 PEVLAAIEAAVAWLE 211 (289)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776667664
No 29
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=91.01 E-value=0.66 Score=45.99 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=75.3
Q ss_pred ChhHHHHHHHHHHHHHhccC-CCCCCCCCCCC-CCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Q 013959 263 SEEDAEDVKGTLRYMMSNRF-PQSGNYPVSEG-NPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLW 340 (433)
Q Consensus 263 ~~~~~~~i~~~l~~l~~~~~-~~~gnwp~~~~-~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~ 340 (433)
.+++++.++.+++|+.+... ++.|.|-.... +.......=++..+=+++++.. +. +++ ++++.+.|+++.+.+.
T Consensus 38 ~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~--~tg-~~~~~~~A~~~~~~l~ 113 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-AR--ATG-DPEALELAEQTLEFLE 113 (346)
T ss_dssp SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HH--CTT--TTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HH--HhC-ChhHHHHHHHHHHHHH
Confidence 67899999999999998664 55677744331 1100111234443334555555 45 677 8888999988887654
Q ss_pred Hc------CCCC-----CCcccccch---hHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhh
Q 013959 341 KN------GLVK-----KVGLADGAA---GNAYAFLSLYRLTGETIYVERANAFSSFLYHNA 388 (433)
Q Consensus 341 ~~------g~~~-----~~~LCHG~a---G~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~ 388 (433)
+. |... ..+..-+.. =.+++++.+++++++++|+++|.++.+.+++.+
T Consensus 114 ~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f 175 (346)
T PF07221_consen 114 RRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRF 175 (346)
T ss_dssp HHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 43 1111 112221211 134567889999999999999999998887543
No 30
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=89.14 E-value=10 Score=38.13 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=91.7
Q ss_pred HHHHHHHHHhHhCCC-----CCchhhHHHHHHHHHhccccccccCCCCCccccc----ccccc-CCCccchhHHHHHHhc
Q 013959 190 FLWAALFVNKHLGAG-----TLPNELLMPIVDAVLAGGRAGATANTACPLMYRW----HGTRY-WGAANGLAGILQVLLH 259 (433)
Q Consensus 190 ~l~~Ll~l~~~~~~~-----~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~-~G~aHG~aGI~~~L~~ 259 (433)
.+++++..|+.++++ ++++ ..+++.+.+... .....-+..+.|.- .+..+ ...+-|.+-++. ++
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~-~A~~i~~~~~~~---wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~la--ar 166 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLD-LAKEIFDFLISG---WDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLA--AR 166 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHH-HHHHHHHHHHHT---B-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHH-HHHHHHHHHHHh---cCCccCCCCccccccccCCCCCcccccchHHHHHHH--HH
Confidence 456899999999987 6664 566666666631 11110012334441 11111 222444333333 33
Q ss_pred CC---CChhHHHHHHHHHHHHHh--ccCCCCCCCCCCCC-CC-----CCcccccccCChhHHHHHHHHhcCCCCCCcH-H
Q 013959 260 FP---LSEEDAEDVKGTLRYMMS--NRFPQSGNYPVSEG-NP-----RDKLVQWSHGATGVAITLCKASQVSVFPSDR-E 327 (433)
Q Consensus 260 l~---~~~~~~~~i~~~l~~l~~--~~~~~~gnwp~~~~-~~-----~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~-~ 327 (433)
++ -++.|++.++++.+|+.+ +.+++.|..-|... +. .....+.+.|.. +-++..+++ +++ ++ .
T Consensus 167 L~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~--l~a~~~Ly~--~T~-~~~~ 241 (370)
T PF03663_consen 167 LYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVF--LGAAAYLYN--ATN-DEQT 241 (370)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHH--HHHHHHHHH--HH---H-H
T ss_pred HHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHH--HHHHHHHHH--hcC-CccH
Confidence 33 356689999999999987 34454454333221 11 111223344433 446667788 776 66 9
Q ss_pred HHHHHHHHHHHHHHc----C--CCCC-----Ccccccchh--HH---HHHHHHHHHhCC--hHHHHHHHHHHHHHH
Q 013959 328 FRDAAIEAGEVLWKN----G--LVKK-----VGLADGAAG--NA---YAFLSLYRLTGE--TIYVERANAFSSFLY 385 (433)
Q Consensus 328 ~~~~a~~a~~~~~~~----g--~~~~-----~~LCHG~aG--~~---~~Ll~~~~~t~~--~~~~~~a~~~~~~~~ 385 (433)
|++.+++.++.+.+. + ++.+ ..-|.++.+ .+ ..|..+++..++ +.+....+.-++.+.
T Consensus 242 yl~~A~~la~~~~~~~~~~~~gil~e~~ce~~~~~~~d~~~Fkgi~~r~L~~l~~~~~~~~~~~~~~l~~~a~~a~ 317 (370)
T PF03663_consen 242 YLDRAEKLADAAINHFFDNGDGILTEEACEPSGTCDGDQPLFKGIFARYLADLAQVAPDTADTYRDFLRKNADAAW 317 (370)
T ss_dssp HHHHHHHHHHHHHHHHEETT--EE----------SSSGGGGHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeeccccccCcCcCCccHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHH
Confidence 999999999887654 2 2222 233887776 22 223445555554 556666665555555
No 31
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=1.1 Score=45.88 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHH
Q 013959 45 ETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCA 116 (433)
Q Consensus 45 ~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~ 116 (433)
..+++.+.+.+|.|...+-... . ..-+|.|-+||-+++..||++|++++|+++|+..+..-.
T Consensus 150 r~lldV~~rlADhi~tvfgp~~----~------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg 211 (589)
T COG3533 150 RRLLDVVCRLADHIATVFGPEE----D------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRG 211 (589)
T ss_pred chHHHHHHHHHHhhhhhcCccc----c------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhc
Confidence 3578888888888887532211 1 234899999999999999999999999999988776543
No 32
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=87.75 E-value=1 Score=45.17 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhccCCC---CC-CCCCCCCCCCCcccccc-cCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 013959 265 EDAEDVKGTLRYMMSNRFPQ---SG-NYPVSEGNPRDKLVQWS-HGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVL 339 (433)
Q Consensus 265 ~~~~~i~~~l~~l~~~~~~~---~g-nwp~~~~~~~~~~~~WC-hG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~ 339 (433)
.+++.+++..+++....++. .| .|-....+.....-.-| +|..-++. +++++ +++ ++.|++.|+++.+-+
T Consensus 113 ~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~la--arL~~--~t~-~~~Yl~~A~~~~~W~ 187 (370)
T PF03663_consen 113 KYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLA--ARLYR--ITG-DQTYLDWAKKIYDWM 187 (370)
T ss_dssp HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHH--HHHHH--HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHH--HHHHH--hcC-ChHHHHHHHHHHHHh
Confidence 78999999999988655543 23 35311111111112233 33333332 33445 567 899999999998765
Q ss_pred HHcCCCC-C---------------------CcccccchhHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHhhh
Q 013959 340 WKNGLVK-K---------------------VGLADGAAGNAYAFLSLYRLTGET-IYVERANAFSSFLYHNA 388 (433)
Q Consensus 340 ~~~g~~~-~---------------------~~LCHG~aG~~~~Ll~~~~~t~~~-~~~~~a~~~~~~~~~~~ 388 (433)
.+.++.. + .+.+.|.+ +..+..+|+.|+++ .|+++|+++++..+..+
T Consensus 188 ~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~--l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~ 257 (370)
T PF03663_consen 188 RDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVF--LGAAAYLYNATNDEQTYLDRAEKLADAAINHF 257 (370)
T ss_dssp HH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHH--HHHHHHHHHHH--H-HHHHHHHHHHHHHHHHH
T ss_pred hcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHh
Confidence 5533321 1 23344444 56678899999877 99999999999987753
No 33
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.56 E-value=8.9 Score=39.44 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCccchhHHHHHHhcCCCChhHHHHHHHHHHHHHhccCCCCC---CCCCCC-CCCCCcccccccCC--hhHHH-HHHHH
Q 013959 244 WGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSG---NYPVSE-GNPRDKLVQWSHGA--TGVAI-TLCKA 316 (433)
Q Consensus 244 ~G~aHG~aGI~~~L~~l~~~~~~~~~i~~~l~~l~~~~~~~~g---nwp~~~-~~~~~~~~~WChG~--~Gi~l-~~l~~ 316 (433)
..+.|=++-++++|+.- -+++..+.|...++-+-+.|.. +| .|-.-. ++..-.-..|||=- .|-++ +.+..
T Consensus 66 sdlgkwlea~A~~l~~~-~dp~Lekr~D~vi~~~a~~Qde-dGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~ 143 (589)
T COG3533 66 SDLGKWLEAAAYSLANK-GDPELEKRIDEVVEELARAQDE-DGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAA 143 (589)
T ss_pred ccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhcc-CCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHH
Confidence 35567777777777653 2456667777777777666654 33 453221 11111125788862 12222 33445
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHHH-cCCCC-CCcccccchhHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 013959 317 SQVSVFPSDREFRDAAIEAGEVLWK-NGLVK-KVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSF 383 (433)
Q Consensus 317 ~~~~~~~~~~~~~~~a~~a~~~~~~-~g~~~-~~~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~ 383 (433)
++ +++ .+.+++.+-+.++.+.+ .|-.. .--+-+|--|+-++|.++|++|++++|++.|+.+-..
T Consensus 144 ~q--aTG-kr~lldV~~rlADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~ 209 (589)
T COG3533 144 HQ--ATG-KRRLLDVVCRLADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQ 209 (589)
T ss_pred HH--hhC-cchHHHHHHHHHHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55 677 77788877777766543 12221 2333447778889999999999999999999876543
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.27 E-value=21 Score=34.42 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccccccc--ccCCC-ccchhHHHHHHhcCC-
Q 013959 186 GRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGT--RYWGA-ANGLAGILQVLLHFP- 261 (433)
Q Consensus 186 G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~G~-aHG~aGI~~~L~~l~- 261 (433)
++.--+..|+.+|+.++++.+. +.+.+-++.|+.. ++.+. +-|..|...+. .++-| -+++..++-+|..+.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~-~A~~rgld~LL~a--QypnG--GWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~ 119 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYR-DAARKGIEYLLKA--QYPNG--GWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIAN 119 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHhh--hCCCC--CcCcccCCcCCcccccccCcHHHHHHHHHHHHHHh
Confidence 6778889999999999987774 5788888888864 33321 11111111110 11222 233566776774431
Q ss_pred -------CC----hhHHHHHHHHHHHHHhccCCCC---CCCCCCCC--------CCCCcccccc-cCChhHHHHHHHHhc
Q 013959 262 -------LS----EEDAEDVKGTLRYMMSNRFPQS---GNYPVSEG--------NPRDKLVQWS-HGATGVAITLCKASQ 318 (433)
Q Consensus 262 -------~~----~~~~~~i~~~l~~l~~~~~~~~---gnwp~~~~--------~~~~~~~~WC-hG~~Gi~l~~l~~~~ 318 (433)
.. ++....+.++++++++.|.+.+ +.|...-+ .+.-.+.+.| +=+.||+..+....+
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ 199 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPN 199 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCC
Confidence 11 2456789999999999887632 24532111 1122356777 455666655554443
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHc
Q 013959 319 VSVFPSDREFRDAAIEAGEVLWKN 342 (433)
Q Consensus 319 ~~~~~~~~~~~~~a~~a~~~~~~~ 342 (433)
. ++++++.+..|++..-+.
T Consensus 200 ----p-s~~i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 200 ----P-SAEIKEAIRAGVAWFDTS 218 (290)
T ss_pred ----C-CHHHHHHHHHHHHHHHHC
Confidence 3 788988888887765443
No 35
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=82.02 E-value=6.2 Score=40.89 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCC--CC-----CCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHH
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSG--GG-----GEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTC 115 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~--~~-----~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~ 115 (433)
-+.++|..|+++|++++-..-...++ +. +....-...+==.|.+...+=|.-|.++|||++|.+.|+++++.+
T Consensus 149 y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~l 228 (622)
T KOG2429|consen 149 YDGELLRLAEDLARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDAL 228 (622)
T ss_pred CCchHHHHHHHHHHhhcccccCCCCCCcceeehhcCCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHH
Confidence 46689999999999999753221110 00 001111223333454555555788888999999999999999876
Q ss_pred HHHhcc---CCCcccccCc---------chHH---HHHHHHHHHHhCChhHHHHHHHH
Q 013959 116 ASVVRD---STRHVTFLCG---------RGGI---YAIGAVVANRMGDRSRRDFFLNL 158 (433)
Q Consensus 116 ~~~~~~---~~~~~~~~~G---------~~Gi---~~~~~~l~~~~g~~~~~~~~~~~ 158 (433)
=+.... .+..+.+.+| .+|| +-.+..-|-++||+++.+-+.+.
T Consensus 229 W~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf~ea 286 (622)
T KOG2429|consen 229 WSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMFNEA 286 (622)
T ss_pred HhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHHHHH
Confidence 553321 1233444554 2345 22233345578999877554443
No 36
>PLN02993 lupeol synthase
Probab=81.20 E-value=28 Score=38.30 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred CCccchhHHHHHHhcCC-C-----ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhc
Q 013959 245 GAANGLAGILQVLLHFP-L-----SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQ 318 (433)
Q Consensus 245 G~aHG~aGI~~~L~~l~-~-----~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~ 318 (433)
..+-+++-++-+|..+. . .++..+.++++++|+.+.|.+ +|.|... ..++..+|+.-.+.++..+.+
T Consensus 561 ~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~-DGSW~G~------Wgv~y~YgT~~aL~aL~a~G~ 633 (763)
T PLN02993 561 EYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTP-DGSWYGN------WGICFIYATWFALGGLAAAGK 633 (763)
T ss_pred CCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCC-CCCcccc------cccccCcHHHHHHHHHHHcCC
Confidence 44667777777776653 1 233456899999999998887 8888632 234566788888888877666
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHH
Q 013959 319 VSVFPSDREFRDAAIEAGEVLWK 341 (433)
Q Consensus 319 ~~~~~~~~~~~~~a~~a~~~~~~ 341 (433)
... +. ..++++++-+.+
T Consensus 634 --~~~-~~---~~IrrAv~fLls 650 (763)
T PLN02993 634 --TYN-DC---LAMRKGVHFLLT 650 (763)
T ss_pred --CCC-Cc---HHHHHHHHHHHH
Confidence 333 32 345566665554
No 37
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=77.43 E-value=2.3 Score=34.13 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=9.9
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHc
Q 013959 270 VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKN 342 (433)
Q Consensus 270 i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~ 342 (433)
|+++++|+++.|.+ +|.|+... +++.......+.+.. ..+ ++.+.+.+.++++.+.+.
T Consensus 1 i~~~~~~l~~~Q~~-dG~W~~~~-----------~~~~~~t~~~~~al~--~~~-~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNP-DGSWGYNW-----------GSDVFVTAALILALA--AAG-DAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp -------------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Cccccccccccccc-cccccccc-----------ccccccccccccccc--ccC-CCCcHHHHHHHHHHHHHh
Confidence 57889999998887 89996431 122222222223333 333 445555666777666554
No 38
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=76.27 E-value=48 Score=34.89 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCC--CC--------CCC-CCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHH
Q 013959 44 CETFLKAAVSLKDQVVEVTWRRGSGGGG--EP--------GRG-MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEII 112 (433)
Q Consensus 44 ~~~~l~~A~~i~d~i~~~~~~~~~~~~~--~~--------~~~-~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i 112 (433)
++.||+.|.+++|.|+-.. ..+..... .+ ..+ .+.+.-...+.+.+=|.+|+++|||++|.+.|.++.
T Consensus 173 d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 173 DEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4579999999999999753 33221100 00 001 112222334455566899999999999999998888
Q ss_pred HHHHH
Q 013959 113 DTCAS 117 (433)
Q Consensus 113 ~~~~~ 117 (433)
+.+.+
T Consensus 252 ~~l~~ 256 (522)
T PTZ00470 252 DALFS 256 (522)
T ss_pred HHHHh
Confidence 77654
No 39
>PLN02993 lupeol synthase
Probab=74.65 E-value=39 Score=37.28 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=59.9
Q ss_pred ccccccchHHHHHHHHHHhHhCCC--CCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHh
Q 013959 181 YDLLYGRAGFLWAALFVNKHLGAG--TLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLL 258 (433)
Q Consensus 181 ~D~l~G~aG~l~~Ll~l~~~~~~~--~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~ 258 (433)
+.....++-++-+|..+.+..++. .-++..+.+.++.|.+.... ++ +|.+.--+.+-.|++-.+.+|.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~-----DG-----SW~G~Wgv~y~YgT~~aL~aL~ 629 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTP-----DG-----SWYGNWGICFIYATWFALGGLA 629 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCC-----CC-----CcccccccccCcHHHHHHHHHH
Confidence 334557777887777665433321 11234667777777753211 11 2333222444558888888887
Q ss_pred cCCCChhHHHHHHHHHHHHHhccCCCCCCCCC
Q 013959 259 HFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPV 290 (433)
Q Consensus 259 ~l~~~~~~~~~i~~~l~~l~~~~~~~~gnwp~ 290 (433)
..+......+.++++++|+++.|.+ +|.|--
T Consensus 630 a~G~~~~~~~~IrrAv~fLls~Q~~-DGGWGE 660 (763)
T PLN02993 630 AAGKTYNDCLAMRKGVHFLLTIQRD-DGGWGE 660 (763)
T ss_pred HcCCCCCCcHHHHHHHHHHHHhcCC-CCCcCc
Confidence 7664322346799999999998887 888853
No 40
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=65.30 E-value=71 Score=30.84 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=83.9
Q ss_pred CccccC-hHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCCcccccCcchHHHHHHHHHHHH-hCChhHHHHHH
Q 013959 79 PTLYTG-LLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANR-MGDRSRRDFFL 156 (433)
Q Consensus 79 ~~LY~G-~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~-~g~~~~~~~~~ 156 (433)
.++=+| ..--+-||+++|+.++|++|++.+.+.|+.++...-+...=+.+|.=..| |. .+. ++| +...+.+
T Consensus 34 ~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~-----~~ITfND-dam~~vl 106 (289)
T PF09492_consen 34 STIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YH-----DHITFND-DAMVNVL 106 (289)
T ss_dssp CE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GG-----GSEE-GG-GHHHHHH
T ss_pred CcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CC-----CceEEcc-HHHHHHH
Confidence 444444 55667889999999999999999999999888754322111222221222 10 111 122 2233333
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCccc
Q 013959 157 NLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMY 236 (433)
Q Consensus 157 ~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~ 236 (433)
..+.+.. + ...+++++.-.- ... ....+.+-++.|+++-...... .. .|
T Consensus 107 ~lL~~v~-~-----------~~~~~~~v~~~~---------~~r------~~~A~~kgi~ciL~tQi~~~g~---~t-~W 155 (289)
T PF09492_consen 107 ELLRDVA-E-----------GKGDFAFVDESL---------RAR------ARAAVDKGIDCILKTQIRQNGK---LT-AW 155 (289)
T ss_dssp HHHHHHH-C-----------T-TTSTTS-HHH---------HHH------HHHHHHHHHHHHHHHS-EETTE---E----
T ss_pred HHHHHHH-h-----------hcCCccccCHHH---------HHH------HHHHHHHHHHHHHHHHcccCCC---CC-ch
Confidence 3333332 1 112344432100 100 1235566666677643211100 01 12
Q ss_pred c-cc---------ccc--cCCC-ccchhHHHHHHhcCC-CChhHHHHHHHHHHHHHhccC
Q 013959 237 R-WH---------GTR--YWGA-ANGLAGILQVLLHFP-LSEEDAEDVKGTLRYMMSNRF 282 (433)
Q Consensus 237 ~-~~---------~~~--~~G~-aHG~aGI~~~L~~l~-~~~~~~~~i~~~l~~l~~~~~ 282 (433)
. -+ .+. ..++ ++-.+||+..|+.+. ..+++++.|..+++|+.+...
T Consensus 156 ~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 156 CQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp -SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSE
T ss_pred hhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcC
Confidence 1 11 111 2444 677889999999997 478899999999999976543
No 41
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=61.77 E-value=70 Score=31.33 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhcCCC-------C--CCCCC--CCCCCCccccChHH-HHHHHHHHhhhhCChHHHH
Q 013959 39 NMSLPCETFLKAAVSLKDQVVEVTWRRGS-------G--GGGEP--GRGMDPTLYTGLLG-TAFICLRSYELTGNQQELL 106 (433)
Q Consensus 39 ~~~~~~~~~l~~A~~i~d~i~~~~~~~~~-------~--~~~~~--~~~~~~~LY~G~~G-ial~l~~L~~~t~~~~y~~ 106 (433)
.++-.++++++.|++++.+++-..-...+ . +...+ .-.-..+-..--+| .++=|+.|.++||++-|.+
T Consensus 129 ~lq~y~dellkmakelg~kllpafnttsglp~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee 208 (587)
T KOG2430|consen 129 RLQTYDDELLKMAKELGNKLLPAFNTTSGLPFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEE 208 (587)
T ss_pred hhhhhhHHHHHHHHHHhhhhccccccCCCCCCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHH
Confidence 44556788999999999999874211110 0 00000 00011222222233 3466899999999999999
Q ss_pred HHHHHHHHHHHHh-ccCC---CcccccCc---------chHH---HHHHHHHHHHhCChhHHHHHHHHHHH
Q 013959 107 LSAEIIDTCASVV-RDST---RHVTFLCG---------RGGI---YAIGAVVANRMGDRSRRDFFLNLFLE 161 (433)
Q Consensus 107 ~a~~~i~~~~~~~-~~~~---~~~~~~~G---------~~Gi---~~~~~~l~~~~g~~~~~~~~~~~i~~ 161 (433)
.|++.++-+-+.. ++++ ..+.+.+| .+|| |-.+...|-++||+.+++++-.....
T Consensus 209 ~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayillgddsfldrfn~hyda 279 (587)
T KOG2430|consen 209 KARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDA 279 (587)
T ss_pred HHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhheeccHHHHHHHHHHHHH
Confidence 9999888554332 2111 11122222 2344 33444456678998888777655443
No 42
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=59.86 E-value=35 Score=35.90 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH-----cCCC-----------C-----CCcccccchhHHHH-HHHHHHHh
Q 013959 311 ITLCKASQVSVFPSDREFRDAAIEAGEVLWK-----NGLV-----------K-----KVGLADGAAGNAYA-FLSLYRLT 368 (433)
Q Consensus 311 l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~-----~g~~-----------~-----~~~LCHG~aG~~~~-Ll~~~~~t 368 (433)
=+++.++. .++ ++.+++.|...++.+.. .|+. . ..+-|-..+|.+.+ |.+++++|
T Consensus 162 GGLLSAy~--Ls~-d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 162 GGLLSAYD--LTG-DEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hHHHHHHH--HcC-CHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 35667777 677 89999998888876542 2321 1 11223344444433 77899999
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 013959 369 GETIYVERANAFSSFLYHN 387 (433)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~~ 387 (433)
+|++|.+.|+++.+.+.+.
T Consensus 239 Gd~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 239 GDPKYAEYVDKVMDALFSM 257 (522)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999998887653
No 43
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=57.71 E-value=65 Score=33.30 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCCCC-----CCC--ccccChHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGG--EPGRG-----MDP--TLYTGLLGTAFICLRSYELTGNQQELLLSAEIID 113 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~--~~~~~-----~~~--~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~ 113 (433)
.++.|++.|.++||.|+... ..+..... .+... ... +.-...+...+=|.+|+++|+|++|.+.|.++.+
T Consensus 96 ~d~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~ 174 (452)
T PF01532_consen 96 GDPILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYD 174 (452)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHH
Confidence 35689999999999998863 43321100 01100 000 1112233344558999999999999999999988
Q ss_pred HHHH
Q 013959 114 TCAS 117 (433)
Q Consensus 114 ~~~~ 117 (433)
.+.+
T Consensus 175 ~l~~ 178 (452)
T PF01532_consen 175 ALWR 178 (452)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8776
No 44
>PLN03012 Camelliol C synthase
Probab=54.74 E-value=2.4e+02 Score=31.29 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred ccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCCCCCcccc-----ccccccCCCccc---hhH
Q 013959 181 YDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR-----WHGTRYWGAANG---LAG 252 (433)
Q Consensus 181 ~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~-----~~~~~~~G~aHG---~aG 252 (433)
-.+++|++-.+.+|....+...+ ...+.+-++.|+.... ++ ..|. ...+.|++.--| +..
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~----~~~Irrav~fLls~Q~--~D------GGWGEs~~Sc~~~~y~~~~~~~S~~~q 682 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFND----CEAIRKGVHFLLAAQK--DN------GGWGESYLSCPKKIYIAQEGEISNLVQ 682 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCC----cHHHHHHHHHHHHhcC--CC------CCcCCCCCCCCCccccCCCCCCCcHHH
Confidence 45567877777777665443332 2478888888886421 11 1222 123345553211 356
Q ss_pred HHHHHhcC---CCChhHHHHHHHHHHHHHhccCCCCCCCCCC
Q 013959 253 ILQVLLHF---PLSEEDAEDVKGTLRYMMSNRFPQSGNYPVS 291 (433)
Q Consensus 253 I~~~L~~l---~~~~~~~~~i~~~l~~l~~~~~~~~gnwp~~ 291 (433)
.+|||.-+ +.....-..++++++|+++.|.+ +|.||..
T Consensus 683 TaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~-dG~W~q~ 723 (759)
T PLN03012 683 TAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE-NGDFPQQ 723 (759)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC-CCCCCCc
Confidence 77766544 22212124689999999998876 7999864
No 45
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=51.97 E-value=1.9e+02 Score=29.14 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCC--CCCcccccccCChhHHHHHHHHhcCCCCCCcH--HHHHHHHHHHHH
Q 013959 263 SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGN--PRDKLVQWSHGATGVAITLCKASQVSVFPSDR--EFRDAAIEAGEV 338 (433)
Q Consensus 263 ~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~--~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~--~~~~~a~~a~~~ 338 (433)
.++..+.+.-+++|+.+.+...+|+|-....+ +.-....=|++-.=.++++..+.+ ..+ .. ++.+.+...++.
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~--a~~-~~a~~~~~~a~~~l~~ 149 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAAT--AGP-PRADELLDEALDVLER 149 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHh--cCC-hhHHHHHHHHHHHHHH
Confidence 34578899999999998776667887443321 111123468888888888888777 554 33 455555555544
Q ss_pred -HHHcC--CC---C-C---Ccccc-cchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhh
Q 013959 339 -LWKNG--LV---K-K---VGLAD-GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQ 389 (433)
Q Consensus 339 -~~~~g--~~---~-~---~~LCH-G~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~ 389 (433)
.|+.. +. . + ..+|- =.+=..+++|..++.++++.|.++|.++++-++.++.
T Consensus 150 ~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~ 211 (388)
T COG2942 150 RFWREEHPLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFA 211 (388)
T ss_pred HHhhhcCCcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhh
Confidence 34332 21 1 1 22210 1122578889999999999999999999998877654
No 46
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=50.91 E-value=2.5e+02 Score=27.60 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=59.6
Q ss_pred cccCChhHHH-HHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCC-----------------CC-CCcccccchhHHHHHH
Q 013959 302 WSHGATGVAI-TLCKASQVSVFPSDREFRDAAIEAGEVLWKNGL-----------------VK-KVGLADGAAGNAYAFL 362 (433)
Q Consensus 302 WChG~~Gi~l-~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~-----------------~~-~~~LCHG~aG~~~~Ll 362 (433)
-|.--.|.++ -+..+.+ .++ .+.+.+.|++|.+-.|++.- .+ ..++--|.-.--+.++
T Consensus 182 tctac~gtlilefaals~--~tg-~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~l 258 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSR--FTG-APIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLL 258 (587)
T ss_pred chhhccchhhhhHHHHhh--ccC-ChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHH
Confidence 3444444444 3445566 788 99999999999999986421 01 2455555555667788
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHhhhh
Q 013959 363 SLYRLTGETIYVERANAFSSFLYHNAQ 389 (433)
Q Consensus 363 ~~~~~t~~~~~~~~a~~~~~~~~~~~~ 389 (433)
.+|-+++|..+++|-..-.+.+.+++.
T Consensus 259 kayillgddsfldrfn~hydai~ryi~ 285 (587)
T KOG2430|consen 259 KAYILLGDDSFLDRFNKHYDAIKRYIN 285 (587)
T ss_pred HHhheeccHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998887777766553
No 47
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=47.21 E-value=2.8e+02 Score=26.98 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHhccCC-------------CCCCCCCCCCCCCCcccccccC-C-hhHHHHHHHHhcC
Q 013959 255 QVLLHFPLSEEDAEDVKGTLRYMMSNRFP-------------QSGNYPVSEGNPRDKLVQWSHG-A-TGVAITLCKASQV 319 (433)
Q Consensus 255 ~~L~~l~~~~~~~~~i~~~l~~l~~~~~~-------------~~gnwp~~~~~~~~~~~~WChG-~-~Gi~l~~l~~~~~ 319 (433)
.+|...+..+++.+.++++++|+.+.+.+ ..|.|+-.... ..|... . +-++.++..+.+
T Consensus 33 ~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~-----~~~~~~~~Ta~~l~al~~~~~- 106 (348)
T cd02889 33 QALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTAN-----QGYPDSDDTAEALKALLRLQK- 106 (348)
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcC-----CCCCCCCChHHHHHHHHHhhc-
Confidence 34555544456778899999999997742 24445421100 012221 2 234445555554
Q ss_pred CCC--CCcHHHHHHHHHHHHHHHHc
Q 013959 320 SVF--PSDREFRDAAIEAGEVLWKN 342 (433)
Q Consensus 320 ~~~--~~~~~~~~~a~~a~~~~~~~ 342 (433)
.. + +....+.+.++++.+.+.
T Consensus 107 -~~~~~-~~~~~~~i~~a~~~L~~~ 129 (348)
T cd02889 107 -KPPDG-KKVSRERLYDAVDWLLSM 129 (348)
T ss_pred -cCccc-chhhHHHHHHHHHHHHHh
Confidence 32 1 245566777777766654
No 48
>PLN03012 Camelliol C synthase
Probab=46.94 E-value=65 Score=35.50 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhHhCCCC--CchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCCCCh
Q 013959 187 RAGFLWAALFVNKHLGAGT--LPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSE 264 (433)
Q Consensus 187 ~aG~l~~Ll~l~~~~~~~~--~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~~~~ 264 (433)
++-++-+|..+.+..++.+ -++..+.+.++.|....+. + . .|.++--+-+..|++-.+.+|...+...
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~-----D--G---sW~G~Wgv~y~YgT~~aL~aL~a~g~~~ 635 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQML-----D--G---SWYGNWGICFTYGTWFALAGLAAAGKTF 635 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCC-----C--C---CCcccccccCCcHHHHHHHHHHHhCccC
Confidence 5556677776665443211 1234666777777753211 1 1 2333322344457777777777665321
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCCC
Q 013959 265 EDAEDVKGTLRYMMSNRFPQSGNYPV 290 (433)
Q Consensus 265 ~~~~~i~~~l~~l~~~~~~~~gnwp~ 290 (433)
...+.|+++++|+++.|.+ +|.|.-
T Consensus 636 ~~~~~Irrav~fLls~Q~~-DGGWGE 660 (759)
T PLN03012 636 NDCEAIRKGVHFLLAAQKD-NGGWGE 660 (759)
T ss_pred CCcHHHHHHHHHHHHhcCC-CCCcCC
Confidence 1236799999999999887 888954
No 49
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=46.61 E-value=1e+02 Score=30.98 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=56.7
Q ss_pred cCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCCCC----cccccchh--------------HHHHHHHHH
Q 013959 304 HGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKV----GLADGAAG--------------NAYAFLSLY 365 (433)
Q Consensus 304 hG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~~~----~LCHG~aG--------------~~~~Ll~~~ 365 (433)
=|+.=|+.+++.+.+ ..+ ++.|.+++...++.+++..+...+ -|-=|..| .-.+|..++
T Consensus 116 DGDl~IA~ALl~A~~--~W~-~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa 192 (376)
T PRK11097 116 DADLWIAYSLLEAGR--LWK-EPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFA 192 (376)
T ss_pred hHHHHHHHHHHHHHH--hhC-cHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHH
Confidence 456668999999999 898 999999999998888876543211 23333333 234566778
Q ss_pred HHhCChHHHHHHHHHHHHHHh
Q 013959 366 RLTGETIYVERANAFSSFLYH 386 (433)
Q Consensus 366 ~~t~~~~~~~~a~~~~~~~~~ 386 (433)
+.++++.|.+.+......+.+
T Consensus 193 ~~~~~~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 193 RFLPGGPWAALAATNARLLLE 213 (376)
T ss_pred HhcCCchHHHHHHHHHHHHHH
Confidence 888998898887766655544
No 50
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=43.33 E-value=93 Score=32.26 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCC-------CCC--cccc--cchhHHHHHHHHHHHhCChHHHHHH
Q 013959 309 VAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLV-------KKV--GLAD--GAAGNAYAFLSLYRLTGETIYVERA 377 (433)
Q Consensus 309 i~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~-------~~~--~LCH--G~aG~~~~Ll~~~~~t~~~~~~~~a 377 (433)
.++.+..++. +.. |+.+.+.+...+. ..|++ ..+ ..-+ -..=.+.+++.+|+.|++++|++.|
T Consensus 389 yll~~vra~~--~s~-D~~Lw~~~~~m~~---~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA 462 (557)
T PF06917_consen 389 YLLPYVRAYR--LSR-DPELWDLARTMAH---HFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELA 462 (557)
T ss_dssp HHHHHHHHHH--HS---HHHHHHHHHHHH---HTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HhHHHHHHHH--cCC-CHHHHHHHHHHHh---hcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4667777777 666 8887776655543 22321 111 1111 1223567788999999999999999
Q ss_pred HHHHHHHHhhhh
Q 013959 378 NAFSSFLYHNAQ 389 (433)
Q Consensus 378 ~~~~~~~~~~~~ 389 (433)
.++++.++++..
T Consensus 463 ~~~g~~l~~~~~ 474 (557)
T PF06917_consen 463 DQVGENLFEQHF 474 (557)
T ss_dssp HHHHHHHHHHHE
T ss_pred HHHHHHHHHHHc
Confidence 999999988543
No 51
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=42.21 E-value=29 Score=31.30 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=29.7
Q ss_pred CCCccccChH-HHH-HHHHHHhhhhCChHHHHHHHHHHHHHHHHh
Q 013959 77 MDPTLYTGLL-GTA-FICLRSYELTGNQQELLLSAEIIDTCASVV 119 (433)
Q Consensus 77 ~~~~LY~G~~-Gia-l~l~~L~~~t~~~~y~~~a~~~i~~~~~~~ 119 (433)
+..+=|++++ |.+ -+|.+.|++|+|++|++.|++.++......
T Consensus 22 l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~ 66 (189)
T PF06662_consen 22 LSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPV 66 (189)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChH
Confidence 3444455533 222 346799999999999999999988665433
No 52
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=40.00 E-value=67 Score=32.50 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCC--CC--------CCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q 013959 44 CETFLKAAVSLKDQVVEVTWRRGSGGG--GE--------PGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIID 113 (433)
Q Consensus 44 ~~~~l~~A~~i~d~i~~~~~~~~~~~~--~~--------~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~ 113 (433)
.+-|++.|..++|+++... ..+.... +. +..+.+.|--.=++-|=+=|-+|..+|||++|.+.|.+..+
T Consensus 193 ~~~~L~kA~dlgdrLl~AF-~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~e 271 (546)
T KOG2431|consen 193 DEMFLNKAEDLGDRLLPAF-SSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVTE 271 (546)
T ss_pred chhHHHHHHHHHHHHHHhh-cCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcCCchHHHHHHHHHH
Confidence 3478999999999999875 3333111 11 11111111111233344557888999999999999999988
Q ss_pred HHHHH
Q 013959 114 TCASV 118 (433)
Q Consensus 114 ~~~~~ 118 (433)
++-..
T Consensus 272 hih~~ 276 (546)
T KOG2431|consen 272 HIHGL 276 (546)
T ss_pred HHhcc
Confidence 77653
No 53
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=39.40 E-value=3.1e+02 Score=29.74 Aligned_cols=129 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhccC--------------CCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhc
Q 013959 253 ILQVLLHFPLSEEDAEDVKGTLRYMMSNRF--------------PQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQ 318 (433)
Q Consensus 253 I~~~L~~l~~~~~~~~~i~~~l~~l~~~~~--------------~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~ 318 (433)
++.+|.+.+..+++.+.++++++|+.+.|. + .|.|+-...+. ...+.-|....-.++..+....
T Consensus 314 a~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~-~GGW~fs~~~~-~~pd~d~Ta~~l~AL~~~~~~~ 391 (634)
T cd02892 314 AVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR-KGGWAFSTANQ-GYPDSDDTAEALKALLRLQELP 391 (634)
T ss_pred HHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC-CCCCCCCCCCC-CCCCcCchHHHHHHHHHhhccC
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCC--CcccccchhH---------------------------HHHHHHHHHHhC
Q 013959 319 VSVFPSDREFRDAAIEAGEVLWKNGLVKK--VGLADGAAGN---------------------------AYAFLSLYRLTG 369 (433)
Q Consensus 319 ~~~~~~~~~~~~~a~~a~~~~~~~g~~~~--~~LCHG~aG~---------------------------~~~Ll~~~~~t~ 369 (433)
-.+ ++...+.+.++++.+.+.....+ .+.+.+..+. +.+|..+.....
T Consensus 392 --~~~-~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~ 468 (634)
T cd02892 392 --PFG-EKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYP 468 (634)
T ss_pred --Ccc-hhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCc
Q ss_pred C--hHHHHHHHHHHHHHHh
Q 013959 370 E--TIYVERANAFSSFLYH 386 (433)
Q Consensus 370 ~--~~~~~~a~~~~~~~~~ 386 (433)
+ .+..+.+++..+++.+
T Consensus 469 ~~r~~i~~~i~rAv~~L~~ 487 (634)
T cd02892 469 GHRREIDPAIRRAVKYLLR 487 (634)
T ss_pred chHHHHHHHHHHHHHHHHH
No 54
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=36.59 E-value=34 Score=22.53 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCccccccc
Q 013959 270 VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSH 304 (433)
Q Consensus 270 i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WCh 304 (433)
++++++|+++.+.+ +|.|....+...+-..+||.
T Consensus 3 ~~~~~~~l~~~Q~~-dGGf~~~~~~~~d~~~t~~~ 36 (44)
T PF00432_consen 3 VEKLIRFLLSCQNP-DGGFGGRPGGESDTCYTYCA 36 (44)
T ss_dssp HHHHHHHHHHTBBT-TSSBBSSTTSSBBHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCCCCCCCCCCCChHHHHHH
Confidence 57899999998885 88885443222222334553
No 55
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=35.96 E-value=1.6e+02 Score=28.90 Aligned_cols=76 Identities=14% Similarity=0.025 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCCCCC-----CCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q 013959 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGG-----EPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCAS 117 (433)
Q Consensus 43 ~~~~~l~~A~~i~d~i~~~~~~~~~~~~~-----~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~ 117 (433)
...++++.|++..+.|.+..|.....+-. ..+.....++|+ .+=+++.++. +.+++++++++.|.+.++.+.+
T Consensus 37 g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~-~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~ 114 (346)
T PF07221_consen 37 GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYD-QAFALLALAE-ARATGDPEALELAEQTLEFLER 114 (346)
T ss_dssp TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHH-HHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHH-HHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHH
Confidence 35569999999999999988754321100 001112345663 2223344556 6789999999999999998887
Q ss_pred Hhc
Q 013959 118 VVR 120 (433)
Q Consensus 118 ~~~ 120 (433)
...
T Consensus 115 ~~~ 117 (346)
T PF07221_consen 115 RFW 117 (346)
T ss_dssp HTE
T ss_pred Hhc
Confidence 763
No 56
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=34.68 E-value=54 Score=29.56 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=25.9
Q ss_pred cccccchhHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 013959 349 GLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFL 384 (433)
Q Consensus 349 ~LCHG~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~ 384 (433)
++|-|.+ +.+|.++|+.|+|++|++.|++..+..
T Consensus 29 amaQG~a--~s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 29 AMAQGQA--ISVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred HHHHHHH--HHHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 4444443 566889999999999999998876544
No 57
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=27.49 E-value=8.2e+02 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=29.3
Q ss_pred hhHHHHHHhcCCC--ChhHHHHHHHHHHHHHhccCCCCCCCCCC
Q 013959 250 LAGILQVLLHFPL--SEEDAEDVKGTLRYMMSNRFPQSGNYPVS 291 (433)
Q Consensus 250 ~aGI~~~L~~l~~--~~~~~~~i~~~l~~l~~~~~~~~gnwp~~ 291 (433)
++-++.+|..... .+...+.++++++|+++.|.+ +|.|+..
T Consensus 383 Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~-dGgw~af 425 (635)
T TIGR01507 383 TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSS-NGGWGAF 425 (635)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCC-CCCEecc
Confidence 3446667766543 234567899999999998876 8999753
No 58
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=25.13 E-value=6.8e+02 Score=27.16 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=52.4
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHc
Q 013959 263 SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKN 342 (433)
Q Consensus 263 ~~~~~~~i~~~l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~ 342 (433)
.+...+.++++.+++.+.|.+ +|.|+.... +=+--+++.++++..+.. . +++..+.+ .+.+...
T Consensus 11 ~~~~~~a~~~~~~~l~~~Q~~-dG~W~~e~~-------~~~~~~a~~i~~~~~~g~--~---~~~~~~~~---~~~l~~~ 74 (635)
T TIGR01507 11 TARTVEAIDRAVDYLLSCQKD-EGYWWGELE-------SNVTIEAEYVLLCHILDR--V---DRDRMEKI---RNYLLHE 74 (635)
T ss_pred cHHHHHHHHHHHHHHHHhccC-CCccccccC-------CcchhcHHHHHHHHHHCC--C---cHHHHHHH---HHHHHHh
Confidence 455678899999999998886 899974321 233456777777777765 2 33333333 3333333
Q ss_pred CCCCC-CcccccchhHHHHHHHHH
Q 013959 343 GLVKK-VGLADGAAGNAYAFLSLY 365 (433)
Q Consensus 343 g~~~~-~~LCHG~aG~~~~Ll~~~ 365 (433)
....+ -++.+|..|++..-...|
T Consensus 75 Q~~DGgWg~~~~~~~~~~~Tv~~Y 98 (635)
T TIGR01507 75 QREDGTWALYPGGPGDLSTTVEAY 98 (635)
T ss_pred ccCCCCccCccCCCcchhHHHHHH
Confidence 32222 677777666555444333
No 59
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=41 Score=30.43 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.3
Q ss_pred CcccccccCChhHHHHHHHH
Q 013959 297 DKLVQWSHGATGVAITLCKA 316 (433)
Q Consensus 297 ~~~~~WChG~~Gi~l~~l~~ 316 (433)
+.+++||+|++-.+-.+...
T Consensus 9 DPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 9 DPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred CcchhhhhCccHHHHHHHhc
Confidence 45789999999887766543
No 60
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=23.09 E-value=2.5e+02 Score=29.65 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=30.1
Q ss_pred ccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH
Q 013959 301 QWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWK 341 (433)
Q Consensus 301 ~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~ 341 (433)
+|-==.|=+.-+...+++ +++ ++.|++..-.+++.+-+
T Consensus 524 syyILrpEviEs~fYlwR--lT~-d~kyR~wgweavqalek 561 (625)
T KOG2204|consen 524 SYYILRPEVIESYFYLWR--LTG-DQKYRSWGWEAVQALEK 561 (625)
T ss_pred ceeecCHHHHHHHHHHhh--hcC-ChhHHHHHHHHHHHHHH
Confidence 344456888889999999 999 99999998888765544
No 61
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=22.95 E-value=54 Score=16.55 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=8.6
Q ss_pred CCcccccccCCCcCC
Q 013959 1 MSSVKFASQDSHAHE 15 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (433)
|.+|.|.....|.|.
T Consensus 1 m~rvqfk~hhhhhhp 15 (16)
T PF08047_consen 1 MNRVQFKHHHHHHHP 15 (16)
T ss_pred CceeEecccccccCC
Confidence 667777654444443
No 62
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=21.64 E-value=1.3e+02 Score=30.22 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=34.8
Q ss_pred CCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q 013959 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASV 118 (433)
Q Consensus 78 ~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~ 118 (433)
..+.-+|--=||+.|...++..+++.|.+.|..+++.+.+.
T Consensus 111 ~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ 151 (376)
T PRK11097 111 ANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIARE 151 (376)
T ss_pred CCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 34566666669999999999999999999999999988874
No 63
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=21.39 E-value=3.3e+02 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=25.7
Q ss_pred chhHHHHHHhcCCCChhHHHHHHHHHHHHHhccCCCCCCCC
Q 013959 249 GLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYP 289 (433)
Q Consensus 249 G~aGI~~~L~~l~~~~~~~~~i~~~l~~l~~~~~~~~gnwp 289 (433)
|++=.+.+|..++......+.++++++|+++.+.+ +|.|-
T Consensus 490 gT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~-DGGWg 529 (621)
T TIGR01787 490 GTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP-DGGWG 529 (621)
T ss_pred hHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC-CCCCC
Confidence 44433446666552211127799999999998876 78884
No 64
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=20.88 E-value=3.6e+02 Score=29.29 Aligned_cols=95 Identities=14% Similarity=-0.012 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHHhHhCCC--CCchhhHHHHHHHHHhccccccccCCCCCccccccccccCCCccchhHHHHHHhcCC
Q 013959 184 LYGRAGFLWAALFVNKHLGAG--TLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP 261 (433)
Q Consensus 184 l~G~aG~l~~Ll~l~~~~~~~--~~l~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~ 261 (433)
+..++-++.+|..+.+..++. .-++..+.+.++.|..... . ++ .| .+.-...+..|++=.+.+|..++
T Consensus 450 ~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~--~---dG---sW--~g~Wg~~~~Y~T~~al~aL~~~G 519 (634)
T TIGR03463 450 VECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQR--E---DG---SF--PGSWGVCFTYGTFHGVMGLRAAG 519 (634)
T ss_pred CcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcC--C---CC---Cc--cccCCCCCcHHHHHHHHHHHHcC
Confidence 445566666665554333211 1113356666666664311 1 11 12 11101123445544555665554
Q ss_pred CChhHHHHHHHHHHHHHhccCCCCCCCCC
Q 013959 262 LSEEDAEDVKGTLRYMMSNRFPQSGNYPV 290 (433)
Q Consensus 262 ~~~~~~~~i~~~l~~l~~~~~~~~gnwp~ 290 (433)
... ..+.++++++|+++.|.+ +|.|..
T Consensus 520 ~~~-~~~~i~rA~~~Ll~~Q~~-DGgWg~ 546 (634)
T TIGR03463 520 ASP-DDMALQRAAAWLRSYQRA-DGGWGE 546 (634)
T ss_pred CCc-CcHHHHHHHHHHHHccCC-CCCccC
Confidence 321 136789999999998877 888964
Done!