Query 013960
Match_columns 433
No_of_seqs 207 out of 975
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 02:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 6.6E-55 2.2E-59 401.6 12.2 157 6-164 13-169 (171)
2 3ulx_A Stress-induced transcri 100.0 1.5E-54 5.1E-59 400.2 14.3 155 6-162 11-170 (174)
3 1jgn_B PAIP2, polyadenylate-bi 21.5 50 0.0017 20.9 1.9 18 399-416 4-21 (26)
4 2oh5_A Polyhedrin, C-polyhedri 14.7 90 0.0031 28.5 2.7 28 90-117 140-168 (248)
5 1ldd_A APC2WHB, anaphase promo 9.6 1.4E+02 0.0049 23.4 2.0 27 11-38 37-64 (74)
6 1cmb_A Met APO-repressor; DNA- 8.0 3.8E+02 0.013 22.1 3.9 39 17-59 50-88 (104)
7 3cpr_A Dihydrodipicolinate syn 6.9 1.6E+02 0.0055 28.3 1.5 18 10-28 118-135 (304)
8 3fkr_A L-2-keto-3-deoxyarabona 6.5 2.2E+02 0.0077 27.3 2.3 20 9-28 109-130 (309)
9 1etr_L Epsilon-thrombin; serin 6.4 1.6E+02 0.0054 21.6 0.9 39 332-383 3-43 (49)
10 1f6k_A N-acetylneuraminate lya 6.3 1.9E+02 0.0066 27.4 1.7 18 10-28 106-123 (293)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.6e-55 Score=401.64 Aligned_cols=157 Identities=48% Similarity=0.921 Sum_probs=131.8
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCCeecCCCCCCCCCCCCccccccCCCcceeeeecccccCCCCCccc
Q 013960 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (433)
Q Consensus 6 ~~~~LPPGFRF~PTDEELV~~YL~rKi~G~pl~~~~I~dvDvY~~ePwdLp~~~~~~~~d~eWYFFs~~~kK~~~G~R~n 85 (433)
....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccc
Confidence 45689999999999999999999999999999999999999999999999998643 4679999999999999999999
Q ss_pred cccccceeeecCCceeeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhhcCCCCCceEEEEeeecCCCC
Q 013960 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEKAGVAQDTFVLCRIFQKSGSG 164 (433)
Q Consensus 86 R~t~~GyWK~tG~~k~I~~~g~vVG~KKtLvFy~Gr~p~G~rT~WvMhEY~L~~~~~~~~g~~~d~~VLCRVf~Ks~~~ 164 (433)
|+|++||||++|++++|..++++||+||+|+||.|++|+|.||+|+||||+|............++|||||||+|+...
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999998899999999999999999999999999999999986522222245899999999998653
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.5e-54 Score=400.23 Aligned_cols=155 Identities=51% Similarity=0.993 Sum_probs=135.1
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHHHcCCCCCCCCeecCCCCCCCCCCCCccccccCCCcceeeeecccccCCCCCccc
Q 013960 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (433)
Q Consensus 6 ~~~~LPPGFRF~PTDEELV~~YL~rKi~G~pl~~~~I~dvDvY~~ePwdLp~~~~~~~~d~eWYFFs~~~kK~~~G~R~n 85 (433)
....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+|||||++++||++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 55689999999999999999999999999999999999999999999999998754 3679999999999999999999
Q ss_pred cccccceeeecCCceeeecCCeeEEEEEEEEeecCCCCCCCccCeEEEEEEeCCCchhh----cC-CCCCceEEEEeeec
Q 013960 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDLEK----AG-VAQDTFVLCRIFQK 160 (433)
Q Consensus 86 R~t~~GyWK~tG~~k~I~~~g~vVG~KKtLvFy~Gr~p~G~rT~WvMhEY~L~~~~~~~----~g-~~~d~~VLCRVf~K 160 (433)
|+|++||||++|++++|..+|++||+||+|+||.|++|+|.||+|+||||+|....... .+ ...++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 99999999999999999988999999999999999999999999999999999865321 11 23589999999999
Q ss_pred CC
Q 013960 161 SG 162 (433)
Q Consensus 161 s~ 162 (433)
++
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 3
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=21.54 E-value=50 Score=20.89 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=14.7
Q ss_pred cCCCCccccccCCCcchh
Q 013960 399 SEQKPDIVKSESGKIMSF 416 (433)
Q Consensus 399 s~~~~~~~~f~~~~~~~~ 416 (433)
|.-+|++.+|.++.+|--
T Consensus 4 s~lnp~akef~pgvkygn 21 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGN 21 (26)
T ss_dssp CSSCTTCCCCCTTSCTTC
T ss_pred ccCCcchhhcCCCceecc
Confidence 445899999999999853
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=14.71 E-value=90 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.2
Q ss_pred cceeeecC-CceeeecCCeeEEEEEEEEe
Q 013960 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (433)
Q Consensus 90 ~GyWK~tG-~~k~I~~~g~vVG~KKtLvF 117 (433)
.--|.+|| +-|.|..+|.+||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 34699999 67888889999999988755
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=9.61 E-value=1.4e+02 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.8
Q ss_pred CCCceeCC-ChHHHHHHHHHHHHcCCCCC
Q 013960 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (433)
Q Consensus 11 PPGFRF~P-TDEELV~~YL~rKi~G~pl~ 38 (433)
|.|+.|.. |.+||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 8888887 599999866553
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=8.05 E-value=3.8e+02 Score=22.06 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCeecCCCCCCCCCCCCccc
Q 013960 17 HPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKS 59 (433)
Q Consensus 17 ~PTDEELV~~YL~rKi~G~pl~~~~I~dvDvY~~ePwdLp~~~ 59 (433)
|-|-.||++.-...-..|+|+|. +.|+-+..|-++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 56778888765567789999987 6689999999999754
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=6.89 E-value=1.6e+02 Score=28.25 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=14.5
Q ss_pred CCCCceeCCChHHHHHHHH
Q 013960 10 LAPGFRFHPTDEELVRYYL 28 (433)
Q Consensus 10 LPPGFRF~PTDEELV~~YL 28 (433)
+|| |.+.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 558899999999973
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=6.54 E-value=2.2e+02 Score=27.32 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=14.8
Q ss_pred CCCCCce--eCCChHHHHHHHH
Q 013960 9 SLAPGFR--FHPTDEELVRYYL 28 (433)
Q Consensus 9 ~LPPGFR--F~PTDEELV~~YL 28 (433)
.+||=|- |.||+++|+.||-
T Consensus 109 v~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 109 AMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp ECCSCBTTTBCCCHHHHHHHHH
T ss_pred EcCCCCccCCCCCHHHHHHHHH
Confidence 3566332 7899999999973
No 9
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=6.41 E-value=1.6e+02 Score=21.59 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=18.6
Q ss_pred HHHHhhcccCCCCCCcccccCcCccccCCCCCCCCCCCc-cccc-ccccccccc
Q 013960 332 VEEYLNFFDANDDNSEYLTFDASEILGSGDNNSDQVPLT-TEVT-EVTDQMSMA 383 (433)
Q Consensus 332 ~d~yl~~fda~~~~~~~~~fd~~~~~g~e~~~~~~~~~~-~~~~-~~~~~~~~~ 383 (433)
+++|++||+- =+| |+.-+.=-+-||. .+++ +.++++.+.
T Consensus 3 ~~~~~tFFnp-------ktF------G~GE~dCG~RPlFEk~~~~D~~E~ELle 43 (49)
T 1etr_L 3 EDHFQPFFNE-------KTF------GAGEADCGLRPLFEKKQVQDQTEKELFE 43 (49)
T ss_dssp ------------------CC------BSCCTTTTCCTTTGGGTCCCTTHHHHHH
T ss_pred cchhhhccCC-------cCC------CCcccccccchhHhhhccccccHHHHHH
Confidence 4689999983 245 8877777888888 3444 666666543
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=6.30 E-value=1.9e+02 Score=27.43 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=14.2
Q ss_pred CCCCceeCCChHHHHHHHH
Q 013960 10 LAPGFRFHPTDEELVRYYL 28 (433)
Q Consensus 10 LPPGFRF~PTDEELV~~YL 28 (433)
+|| |.|.||+++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 458899999999974
Done!