Your job contains 1 sequence.
>013962
MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG
DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT
PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV
EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH
PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD
VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA
IVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMGPSVNIEDKYRFMIAASN
MKREGAADSAWDD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013962
(433 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 814 4.1e-81 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 809 1.4e-80 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 801 9.7e-80 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 799 1.6e-79 1
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 777 3.4e-77 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 773 9.0e-77 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 771 1.5e-76 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 770 1.9e-76 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 767 3.9e-76 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 765 6.3e-76 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 764 8.1e-76 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 763 1.0e-75 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 762 1.3e-75 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 762 1.3e-75 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 762 1.3e-75 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 762 1.3e-75 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 762 1.3e-75 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 762 1.3e-75 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 762 1.3e-75 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 761 1.7e-75 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 765 2.5e-75 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 759 2.7e-75 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 758 3.5e-75 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 758 3.5e-75 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 758 3.5e-75 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 757 4.5e-75 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 752 1.5e-74 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 752 1.5e-74 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 752 1.5e-74 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 752 1.5e-74 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 752 1.5e-74 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 752 1.5e-74 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 752 1.5e-74 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 751 1.9e-74 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 748 4.0e-74 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 745 8.4e-74 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 743 1.4e-73 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 742 1.7e-73 1
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 742 1.7e-73 1
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 740 2.8e-73 1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 739 3.6e-73 1
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 739 3.6e-73 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 739 3.6e-73 1
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 739 3.6e-73 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 739 3.6e-73 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 739 3.6e-73 1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 739 3.6e-73 1
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 738 4.6e-73 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 738 4.6e-73 1
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 738 4.6e-73 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 737 5.9e-73 1
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 737 5.9e-73 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 737 5.9e-73 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 736 7.5e-73 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 736 7.5e-73 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 735 9.6e-73 1
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 735 9.6e-73 1
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 735 9.6e-73 1
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 735 9.6e-73 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 733 1.6e-72 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 730 3.2e-72 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 730 3.2e-72 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 729 4.1e-72 1
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 729 4.1e-72 1
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 729 4.1e-72 1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 727 6.7e-72 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 727 6.7e-72 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 726 8.6e-72 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 725 1.1e-71 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 722 2.3e-71 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 722 2.3e-71 1
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 721 2.9e-71 1
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 728 2.9e-71 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 720 3.7e-71 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 720 3.7e-71 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 697 4.2e-71 2
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 715 1.3e-70 1
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 714 1.6e-70 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 714 1.6e-70 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 713 2.1e-70 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 714 2.2e-70 1
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 710 4.3e-70 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 708 7.0e-70 1
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 708 7.0e-70 1
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 707 8.9e-70 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 707 8.9e-70 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 707 8.9e-70 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 707 8.9e-70 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 707 8.9e-70 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 707 8.9e-70 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 707 8.9e-70 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 707 8.9e-70 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 707 8.9e-70 1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 704 1.8e-69 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 703 2.4e-69 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 701 3.8e-69 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 700 4.9e-69 1
POMBASE|SPCC1795.11 - symbol:sum3 "translation initiation... 698 8.0e-69 1
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 698 8.0e-69 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 697 1.0e-68 1
WARNING: Descriptions of 894 database sequences were not reported due to the
limiting value of parameter V = 100.
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 165/359 (45%), Positives = 240/359 (66%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ +++ + +PT IQ Q P+ALSGRD++G A TGSGKT ++ +P I H AQ + G
Sbjct: 125 LNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPG 184
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA QI+ E S + V GG ++Q +L G IV+AT
Sbjct: 185 DGPIVLVLAPTRELAVQIQTECSKFGHS-SRIRNTCVYGGVPKSQQIRDLSRGSEIVIAT 243
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 244 PGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 302
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E++ LA +YL DP+QV+VG + S + N+ QI+E VS+ EK DR
Sbjct: 303 KEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYK 362
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
T++F K CD++++ L +G A+A+HG ++Q +R+ L++FRNG + I+VA
Sbjct: 363 ------TLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVA 416
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
TDVA+RG+DV G+ +V+N D+P +EDYVHRIGRTGR G+ G A SF+T+++ L A++
Sbjct: 417 TDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKL 475
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 163/366 (44%), Positives = 236/366 (64%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+++++ + +PT IQ Q P+ALSGRD++G A TGSGKT ++ +P I H AQ + G
Sbjct: 139 LQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYG 198
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA QI+ E +S + V GG Q +L GV I +AT
Sbjct: 199 DGPIVLVLAPTRELAVQIQTECSKFGKS-SRIRNTCVYGGAPKGPQIRDLARGVEICIAT 257
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 258 PGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 316
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E++ L ++YL DP+QV +G + ++ I Q++E + E K DR
Sbjct: 317 KEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNK 376
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
+VF K CDE++ L ++G A+A+HG + Q++R+ L +FR G T+I+VA
Sbjct: 377 I------LVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVA 430
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVA+RG+DV G+ HV+N D+P +EDYVHRIGRTGRGG+ G A SF+T+ + L +
Sbjct: 431 TDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLC 490
Query: 359 KAIVDA 364
K + +A
Sbjct: 491 KIMREA 496
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 166/349 (47%), Positives = 228/349 (65%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M +I + +PT+IQAQ P+A+SGRDL+G A+TGSGKT A+ +P + H Q + RG
Sbjct: 169 MNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERG 228
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ALVLAPTRELAQQI+ +V S + + GG +Q +L GV IV+AT
Sbjct: 229 DGPIALVLAPTRELAQQIQ-QVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIAT 287
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L++G TSL R ++++LDEADRMLDMGFEPQIR++MQ + PD+ Q L++SAT P
Sbjct: 288 PGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDR-QVLMWSATWP 346
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+E+L + +QV +G +S S N++QI++ ENEK+ +
Sbjct: 347 KEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETK 406
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TI+FVE K R DE++ + +G A A+HG ++Q +R+ L FRNG +ILVA
Sbjct: 407 ------TIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 460
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
TDVA+RGLDV V V+N D P EDYVHRIGRTGR + G A + +T
Sbjct: 461 TDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFT 509
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 159/350 (45%), Positives = 240/350 (68%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+++++ +T+PT+IQ+Q P+ALSGRDL+G A+TGSGKT A+ +P I H Q P+ RG
Sbjct: 249 IEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRG 308
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
+GP+ALVLAPTRELAQQI+ V+ + + GG++ Q +L GV +++A
Sbjct: 309 EGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIA 368
Query: 120 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 178
TPGR +D L+ NT+L R ++++LDEADRMLDMGFEPQIR++++ + PD+ Q +++SAT
Sbjct: 369 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QVVMWSATW 427
Query: 179 PVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
P E++ALA ++L D +Q+ +G ++ S N+ QI+E +E EK R
Sbjct: 428 PKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNS 487
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+ + IVFVE K + +++ + + AEG +A ++HG + Q++R+S L+DFRNG +NIL+
Sbjct: 488 GNNGNKI-IVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILI 546
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
ATDVASRGLDV + +V+N D P + E+YVHRIGRTGR +G A +F+T
Sbjct: 547 ATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 596
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 169/371 (45%), Positives = 232/371 (62%)
Query: 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA----QTPVG 58
+I+ +Y +PT +Q A+P+ +GRDL+ CA+TGSGKTAAF P+I + + P G
Sbjct: 160 NIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
Query: 59 -RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
RG PLA++L+PTRELA QI E + S K + GGT + +Q EL GV I+
Sbjct: 220 VRGVYPLAVILSPTRELACQIHDEARKFSYQT-GVKVVVAYGGTPVNQQIRELERGVDIL 278
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL----PDKHQTLL 173
VATPGR D L++G SL V F+ LDEADRMLDMGFEPQIR+++Q + P QT+L
Sbjct: 279 VATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTML 338
Query: 174 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXX 233
FSAT P EI+ LA ++L++ + + VG+V S T ++Q +E V +++K R
Sbjct: 339 FSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDK--RSHLMDLLHAQ 396
Query: 234 XXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 293
+ LT+VFVE K D + L G A +HG R+Q +RE ALR F+ G T
Sbjct: 397 RENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRT 456
Query: 294 NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 353
ILVATDVA+RGLD+ VAHVVN DLP ++DYVHRIGRTGR G+ G AT+F+ D + +
Sbjct: 457 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTM 516
Query: 354 VAQIKKAIVDA 364
+ + + +A
Sbjct: 517 AKPLAELMQEA 527
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 162/359 (45%), Positives = 232/359 (64%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQAQ P+AL GRDL+G AETGSGKT A+ +P + H AQ +G+ DGP+ L+L
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Query: 69 APTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
APTRELA QI++E + RS ++ + GG Q +LR GV IV+ATPGR +D
Sbjct: 245 APTRELAVQIQEESRKFGLRS--GVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDM 302
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALA 186
L+ +T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QTLL+SAT P E+E LA
Sbjct: 303 LECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR-QTLLWSATWPREVETLA 361
Query: 187 QEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLT 245
+++L DP + +G ++ Q++E V EK +R K
Sbjct: 362 RQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL--------KQLMDGSKI 413
Query: 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305
++FVE K CD+V+ L +G A+A+HG + QS+R+ L +F++G + I+ ATDVA+RG
Sbjct: 414 LIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARG 473
Query: 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
LDV + VVN D P T+EDY+HRIGRTGR G+ G A +F+T + ++ K + +A
Sbjct: 474 LDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEA 532
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 161/365 (44%), Positives = 235/365 (64%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK+I Y PT+IQAQ P+A+SG + +G A+TGSGKT + +P I H Q P+ RG
Sbjct: 293 MKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRG 352
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ALVLAPTRELAQQI++ S + V GG Q +L+ G IV+AT
Sbjct: 353 DGPIALVLAPTRELAQQIQQVATEFGSS-SYVRNTCVFGGAPKGGQMRDLQRGCEIVIAT 411
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L G+T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 412 PGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR-QTLMWSATWP 470
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E++ LA+++L + +Q+ +G + S N+ Q+++ E K ++
Sbjct: 471 KEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSES- 529
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P + I+FVE K R D + + + G+ A+HG ++QS+R+ LR+FR+G +NILVA
Sbjct: 530 --PGKI-IIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVA+RGLDV G+ +V+N D P+ EDY+HRIGRTGR + G + +F+T + A+
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNN----AKQA 642
Query: 359 KAIVD 363
KA+VD
Sbjct: 643 KALVD 647
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 160/358 (44%), Positives = 229/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+ PT+IQAQ P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 115 FKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 174
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ +S K+ V GG Q +L GV I +ATPGR +D L
Sbjct: 175 APTRELAQQVQQVAFDYGKS-SRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFL 233
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 234 EVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 292
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D VQ+ +G + S N++QI++ ENEK ++ TI
Sbjct: 293 DFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENK------TI 346
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCDE++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 347 IFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGL 406
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ + + + +A
Sbjct: 407 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEA 464
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 159/381 (41%), Positives = 233/381 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ +++ + +PT+IQ+Q P+ALSGRD++G AETGSGKT ++ +P I H AQ + G
Sbjct: 152 LSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPG 211
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ L+LAPTRELA QI+ E+ +S + V GG Q +L GV + +AT
Sbjct: 212 DGPIVLILAPTRELAVQIQAEISKFGKS-SRIRNTCVYGGVPKGPQIRDLSRGVEVCIAT 270
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QT ++SAT P
Sbjct: 271 PGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR-QTCMWSATWP 329
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA ++L + +QV +G + S + QI+E +SE EK DR
Sbjct: 330 KEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNK 389
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
C +VF K DE++ L +G A+++HG + Q +R+ L +F+ G + I+VA
Sbjct: 390 C------LVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 443
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD------RDML 352
TDVASRG+DV + HV+N D P EDYVHRIGRTGR G+ G A +F+T RD++
Sbjct: 444 TDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLV 503
Query: 353 LVAQIKKAIVDAESGNAVAFA 373
+ K +D V ++
Sbjct: 504 TILSEAKQQIDPRLAEMVRYS 524
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 159/358 (44%), Positives = 229/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 110 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 169
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 170 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 228
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 229 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 287
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D VQ+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 288 DFLQDYVQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 341
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 342 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 401
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 402 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 459
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 162/371 (43%), Positives = 231/371 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M +++ + PT+IQ+Q P+ALSGRD++G AETGSGKT + +P I H AQ + G
Sbjct: 137 MDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPG 196
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ L+LAPTRELA QI+ E+ +S + V GG Q +L GV + +AT
Sbjct: 197 DGPIVLILAPTRELAVQIQAEISKFGKS-SRIRNTCVYGGVPKGPQIRDLSRGVEVCIAT 255
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 256 PGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDR-QTLMWSATWP 314
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ +A ++L D +QV +G + S + QI+E VSE+EK DR
Sbjct: 315 KEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSK 374
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
++FV K DE++ L +G A+++HG + Q++R+ L F+ G + I+VA
Sbjct: 375 NK----ILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVA 430
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD------RDML 352
TDVASRG+DV + HV+N D P EDY+HRIGRTGR G+ G A +F+T RD+L
Sbjct: 431 TDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLL 490
Query: 353 LVAQIKKAIVD 363
V Q K +D
Sbjct: 491 GVLQEAKQEID 501
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 166/366 (45%), Positives = 226/366 (61%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG----- 62
+Y +PT +Q A+P+ L GRDL+ CA+TGSGKTAAF P+I + V R G
Sbjct: 178 KYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVY 237
Query: 63 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
PLA++L+PTRELA QI E K S K + GGT I +Q EL GV I+VATPG
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQT-GVKVVVAYGGTPINQQLRELERGVDILVATPG 296
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDK--HQTLLFSATM 178
R D L++ S+ + F+ LDEADRMLDMGFEPQIR++++ ++P + QTLLFSAT
Sbjct: 297 RLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATF 356
Query: 179 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
P EI+ LA ++L + + + VG+V S T ++Q +E V +++K +
Sbjct: 357 PREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQG 416
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
LT+VFVE K D + L G A ++HG R Q +RE AL+ F++G T ILVA
Sbjct: 417 KQA--LTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVA 474
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVA+RGLD+ VAHVVN DLP ++DYVHRIGRTGR G G AT+F+ D + L +
Sbjct: 475 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLA 534
Query: 359 KAIVDA 364
+ + +A
Sbjct: 535 ELMQEA 540
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 172 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 231 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 289
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 290 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 343
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 461
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 172 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 231 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 289
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 290 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 343
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 461
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 252
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 253 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 311
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 312 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 370
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 371 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 424
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 542
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 250
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 251 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 309
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 310 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 368
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 369 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 422
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 540
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 250
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 251 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 309
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 310 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 368
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 369 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 422
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 540
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 252
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 253 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 311
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 312 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 370
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 371 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 424
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 542
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/358 (44%), Positives = 228/358 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 172 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 231 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 289
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 290 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 343
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 461
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 166/368 (45%), Positives = 232/368 (63%)
Query: 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 66
H Y +PT IQAQA+P +SGRDL+G A+TGSGKT AF +PM +H + Q PVG +GPLA+
Sbjct: 375 HNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAV 434
Query: 67 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLD 126
++ PTRELA QI KE K S+SL + + V GGT I+EQ +EL+ G I+V TPGR +D
Sbjct: 435 IMTPTRELALQITKECKKFSKSL-ALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMID 493
Query: 127 HLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 182
L N T+L RV++V++DEADRM DMGFEPQ+ ++ N+ PD+ QT++FSAT P +
Sbjct: 494 MLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSATFPRTM 552
Query: 183 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
EALA+ L+ PV+V+VG S ++V Q + + E +K +
Sbjct: 553 EALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGS------ 606
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +LVAT VA
Sbjct: 607 --VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVA 664
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362
+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+ I KA+
Sbjct: 665 ARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKAL- 723
Query: 363 DAESGNAV 370
SG++V
Sbjct: 724 -ELSGSSV 730
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 765 (274.4 bits), Expect = 2.5e-75, P = 2.5e-75
Identities = 157/356 (44%), Positives = 224/356 (62%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +P IQ QA+P+ +SGRD +G A+TGSGKT F +PM++H Q PV GDGP+ LV+
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTREL QQI +++ S+ L + V GG+ +A+Q SEL+ G IVV TPGR +D L
Sbjct: 609 APTRELVQQIHSDIRKFSKPL-GIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 667
Query: 129 --QQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 185
G T+L RV+F+++DEADRM DMGFEPQI ++QN+ + QT+LFSAT P ++E L
Sbjct: 668 CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETL 727
Query: 186 AQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLT 245
A++ L PV+++VG S ++ Q++E E+ DR K
Sbjct: 728 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES---DRFLRLLELLGEWSEKG-----KI 779
Query: 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305
+VFV+ + +CD + ++ ++LHGG++Q+DRES + DF+N N+L+AT VA+RG
Sbjct: 780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARG 839
Query: 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
LDV + VVN D P EDYVHR+GRTGR G G A +F ++ D + KA+
Sbjct: 840 LDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 895
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 155/367 (42%), Positives = 240/367 (65%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+++++ +T PT IQ+Q P+A+ GRDL+G AETGSGKT ++ +P I H AQ + G
Sbjct: 111 LEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHG 170
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA QI++E S KT + GG Q +L+ GV IV+AT
Sbjct: 171 DGPIVLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D ++ NT+L RV++++LDEADRMLDMGF+PQIR+++ ++ PD+ QTL +SAT P
Sbjct: 230 PGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDR-QTLYWSATWP 288
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
E+E L++++L +P +V +G S AN + QI++ +SE++K ++
Sbjct: 289 KEVEQLSKKFLYNPYKVIIGS-SDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSR- 346
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+VF++ K CD+++ L +G A+++HG ++Q++R+ L +FR+G + I+
Sbjct: 347 -------ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMT 399
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVA+RGLDV V +V+N D P ++EDYVHRIGRTGR G+ G A +F+T + ++
Sbjct: 400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
Query: 358 KKAIVDA 364
+ +A
Sbjct: 460 TNILQEA 466
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 161/367 (43%), Positives = 227/367 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK+I + PT IQ+QA P+AL GRD++G A+TGSGKT AF +P I H AQ +
Sbjct: 396 MKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLRED 455
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA QI++E + T V GG + Q + L+ GV IV+AT
Sbjct: 456 DGPIVLVLAPTRELALQIQEETNKFGGTSQISNTC-VYGGASKHTQVAALKKGVEIVIAT 514
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QTL+FSAT P
Sbjct: 515 PGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDR-QTLMFSATWP 573
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E++ALA ++LTD +QV +G + NV QI+E + EK +R
Sbjct: 574 KEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEK-- 631
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
IVF E + D++ L G ++ +HG ++Q +R+ L F+NG I++A
Sbjct: 632 ------VIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIA 685
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLD+ + +VVN D P T+E Y+HRIGRT R G+ G + S T + L ++
Sbjct: 686 TDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELI 745
Query: 359 KAIVDAE 365
K + +A+
Sbjct: 746 KVLTEAK 752
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 158/366 (43%), Positives = 231/366 (63%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M+ I+ +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 94 MEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 153
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ SR+ K+ + GG Q +L GV I +AT
Sbjct: 154 DGPICLVLAPTRELAQQVQQVAAEYSRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 212
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 213 PGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 271
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L + V + +G + S N++QI++ + EK D+
Sbjct: 272 KEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENK 331
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCD+++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 332 ------TIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 385
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V +
Sbjct: 386 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 445
Query: 359 KAIVDA 364
+ +A
Sbjct: 446 SVLREA 451
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 158/366 (43%), Positives = 231/366 (63%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M+ I+ +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 102 MEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 161
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ SR+ K+ + GG Q +L GV I +AT
Sbjct: 162 DGPICLVLAPTRELAQQVQQVAAEYSRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 220
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 221 PGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 279
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L + V + +G + S N++QI++ + EK D+
Sbjct: 280 KEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENK 339
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCD+++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 340 ------TIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 393
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V +
Sbjct: 394 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 453
Query: 359 KAIVDA 364
+ +A
Sbjct: 454 SVLREA 459
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 157/353 (44%), Positives = 222/353 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT IQAQ PVALSG+D++G A+TGSGKT ++ +P I H Q + G
Sbjct: 108 MDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHG 167
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ++ +V A K+ + GG Q +L GV I +AT
Sbjct: 168 DGPICLVLAPTRELAQQVQ-QVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIAT 226
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 227 PGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 285
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L + +Q+ VG + S N++QI++ ++ EK D+
Sbjct: 286 KEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENK 345
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TI+FVE K RCD+++ + +G A+ +HG +NQ +R+ L +F+ G IL+A
Sbjct: 346 ------TIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIA 399
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351
TDVASRGLDV V V+N D P EDY+HRIGRT R G A +F+T +M
Sbjct: 400 TDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNM 452
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 163 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 222
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 223 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 281
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 282 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 340
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 341 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 400
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 401 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 454
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 455 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 514
Query: 359 KAIVDA 364
+ +A
Sbjct: 515 SVLREA 520
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/366 (42%), Positives = 229/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 158/360 (43%), Positives = 228/360 (63%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ LVL
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVL 171
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELAQQ+++ + K+ + GG Q +L GV I +ATPGR +D L
Sbjct: 172 APTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQ 187
+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA+
Sbjct: 231 ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLAE 289
Query: 188 EYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
++L D Q+ VG + S N++QI++ E+EK D ++ TI
Sbjct: 290 DFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KTI 343
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 307 --DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 404 GFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 463
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 157/366 (42%), Positives = 228/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/366 (42%), Positives = 228/366 (62%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I +T PT+IQAQ PVALSG D++G A+TGSGKT ++ +P I H Q + RG
Sbjct: 106 MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 165
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV +AT
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVENCIAT 224
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P
Sbjct: 225 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWP 283
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL+A
Sbjct: 344 ------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+ +
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457
Query: 359 KAIVDA 364
+ +A
Sbjct: 458 SVLREA 463
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 164/383 (42%), Positives = 235/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 234 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 293
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 294 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 351
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 352 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 411
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q + V E++K
Sbjct: 412 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK-- 469
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
R K LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 470 RSFLLDLLNATESGKDS----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 525
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 526 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 585
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 586 TSFFNERNINITKDLLDLLVEAK 608
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 165/383 (43%), Positives = 234/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ A P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEAL 251
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG I +Q
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGAEIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEID 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 542 TSFFNERNINITKDLLDLLVEAK 564
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 165/383 (43%), Positives = 234/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ A P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEAL 251
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG I +Q
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGAEIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEID 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 542 TSFFNERNINITKDLLDLLVEAK 564
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 162/366 (44%), Positives = 222/366 (60%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG----- 62
+Y RPT +Q A+P+ L+ RDL+ CA+TGSGKTAAF P+I + V R G
Sbjct: 170 KYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVY 229
Query: 63 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
P A++L+PTRELA QI E K S K + GGT I +Q EL G I+VATPG
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQT-GVKVVVAYGGTPIHQQLRELERGCDILVATPG 288
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDK--HQTLLFSATM 178
R D L++ S+ + F+ LDEADRMLDMGFEPQIR++++ ++P + QT+LFSAT
Sbjct: 289 RLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF 348
Query: 179 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
P +I+ LA +++++ + + VG+V S T + Q +E V E++K K
Sbjct: 349 PSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQ 408
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
LT+VFVE K D + L A ++HG R Q +RE ALR F+ G T ILVA
Sbjct: 409 S----LTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVA 464
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVA+RGLD+ VAHVVN DLP ++DYVHRIGRTGR G G AT+F+ + + L +
Sbjct: 465 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLA 524
Query: 359 KAIVDA 364
+ + +A
Sbjct: 525 ELMQEA 530
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 161/374 (43%), Positives = 231/374 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+ ++ H Y +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + G
Sbjct: 384 LNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEG 443
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V T
Sbjct: 444 EGPIAVIMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSA
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSA 561
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA+ L+ P++V+VG S ++V Q + + E +K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +L
Sbjct: 622 --------VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VAT VA+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+
Sbjct: 674 VATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGD 733
Query: 357 IKKAIVDAESGNAV 370
I KA+ SG AV
Sbjct: 734 IIKAL--ELSGTAV 745
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 159/367 (43%), Positives = 230/367 (62%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 67
EY +PT+IQ QA+PV +SGRD++G A+TGSGKT AF +PM +H Q PV +GP+ L+
Sbjct: 397 EYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLI 456
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L PTRELA QI ++ K ++L + GG I +Q ++L+ G IVVAT GR +D
Sbjct: 457 LTPTRELAVQIFRDCKPFLKTL-GLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDL 515
Query: 128 L--QQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 183
L QG SL R ++++LDEADRM DMGFEPQ+ ++ N+ PD+ QT+LFSATMP ++
Sbjct: 516 LAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDR-QTVLFSATMPKIMD 574
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
AL ++ L +PV+++VG S + + QI+E E K +R
Sbjct: 575 ALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDV----- 629
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+++FVER+ + DE+ L+ +G ++LHGG++Q DR+S + DF++G +++AT VA+
Sbjct: 630 RSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAA 689
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363
RGLDV + VVN D P +EDYVHR GRTGR G+ G A +F T+ I KA+
Sbjct: 690 RGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKAL-- 747
Query: 364 AESGNAV 370
+SG V
Sbjct: 748 EQSGQPV 754
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 156/367 (42%), Positives = 226/367 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K+++ + PT IQ QA P+A+SGRD++G + TGSGKT ++ +P I H AQ + G
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPG 193
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA QI++E +S + V GG Q +L GV I +AT
Sbjct: 194 DGPIVLVLAPTRELAVQIQQECTKFGKS-SRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR LD L T+L RV++++LDEADRMLDMGFEPQIR+++ + PD+ QT++FSAT P
Sbjct: 253 PGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTVMFSATWP 311
Query: 180 VEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
E++ LA++YL D +QV VG + + + N+ QI+E V +K R
Sbjct: 312 KEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNK 371
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
++F K D+++ L +G A+A+HG + Q +R+ L +FR G + I+VA
Sbjct: 372 ------VLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVA 425
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVASRG+DV G+ HV N D P EDYVHRIGRTGR G+ G A +++T + ++
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELV 485
Query: 359 KAIVDAE 365
+ +A+
Sbjct: 486 SILSEAK 492
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 160/350 (45%), Positives = 226/350 (64%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M ++ EY++PTSIQAQA+P +SGRD++G A+TGSGKT AF +PM +H + Q + G
Sbjct: 316 MNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEG 375
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A++LAPTRELA Q KE ++ L K A GG I+EQ ++L+ G IVV T
Sbjct: 376 DGPIAVILAPTRELAMQTYKEANKFAKPL-GLKVACTYGGVGISEQIADLKRGAEIVVCT 434
Query: 121 PGRFLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
PGR +D L + T+L RV++++LDEADRM D GFEPQI +V+ N+ PDK QT+LFSA
Sbjct: 435 PGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDK-QTVLFSA 493
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
T P +EALA++ L PV++ VG S +++ Q +E++K +
Sbjct: 494 TFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGS 553
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVA-LHGGRNQSDRESALRDFRNGSTNI 295
+IVFV+++ + D++ + L+ G ++VA LHGG +Q DR+S++ DF+ G +
Sbjct: 554 --------SIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKV 605
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
LVAT VA+RGLDV + VVN D P EDYVHR+GRTGR G G A +F
Sbjct: 606 LVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTF 655
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 164/383 (42%), Positives = 235/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ A P
Sbjct: 170 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAL 229
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + + RS + +V GG +I +Q
Sbjct: 230 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRS--RVRPCVVYGGADIGQQ 287
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 288 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 347
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++D
Sbjct: 348 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEELD 404
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 405 KRSFLLDLLNATGKDS-----LTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDRE 459
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 460 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 519
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 520 TSFFNERNINITKDLLDLLVEAK 542
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 164/383 (42%), Positives = 233/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 187 MGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 246
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 247 KAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 304
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 305 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 364
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E +D
Sbjct: 365 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEDLD 421
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 422 KRSFLLDILGATGSDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 476
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 477 EALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 536
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +++M + + +V+A+
Sbjct: 537 TSFFNEKNMNITKDLLDLLVEAK 559
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 164/383 (42%), Positives = 233/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 190 MGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 249
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 250 KAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 307
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 308 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 367
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E +D
Sbjct: 368 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEDLD 424
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 425 KRSFLLDILGATGSDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 479
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 480 EALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 539
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +++M + + +V+A+
Sbjct: 540 TSFFNEKNMNITKDLLDLLVEAK 562
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 160/368 (43%), Positives = 228/368 (61%)
Query: 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 66
H Y +PT IQ+QA+P ++GRDL+G A+TGSGKT AF +PM +H + Q + G+GP+A+
Sbjct: 389 HGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAV 448
Query: 67 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLD 126
++ PTRELA QI KE K S++L + V GGT I+EQ +EL+ G I+V TPGR +D
Sbjct: 449 IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMID 507
Query: 127 HLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 182
L N T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSAT P +
Sbjct: 508 MLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR-QTVMFSATFPRAM 566
Query: 183 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
EALA+ L+ P++V+VG S ++V Q + + E K +
Sbjct: 567 EALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGS------ 620
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
I+FV+++ D + + L+ ++LHGG +Q DR+S + DF+NG+ +LVAT VA
Sbjct: 621 --VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVA 678
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362
+RGLDV + VVN P EDYVHR GRTGR G+ G A +F T+ I KA+
Sbjct: 679 ARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKAL- 737
Query: 363 DAESGNAV 370
SGN +
Sbjct: 738 -ELSGNPI 744
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 167/387 (43%), Positives = 232/387 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +I YTRPT +Q A+P+ S RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 220 MGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEAL 279
Query: 57 ------------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTN 102
GR P++LVLAPTRELA QI E + S RS + +V GG +
Sbjct: 280 QAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRS--HVRPCVVYGGAD 337
Query: 103 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162
I +Q +L G ++VATPGR LD +++G L ++++LDEADRMLDMGFEPQIR ++
Sbjct: 338 IGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIV 397
Query: 163 QN--LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN 218
+ +P K QT++FSAT P EI+ LA+++L D + + VG+V S + N+ Q + V EN
Sbjct: 398 EQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEEN 457
Query: 219 EKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQ 278
+K R LT+VFVE K D + + L EG ++HG R+Q
Sbjct: 458 DK--RSFLLDLLNATGKDS------LTLVFVETKKGADALEDFLYREGYACTSIHGDRSQ 509
Query: 279 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 338
DRE AL FR+G ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G+
Sbjct: 510 RDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 569
Query: 339 MGQATSFYTDRDMLLVAQIKKAIVDAE 365
+G ATSF+ D++ + + +V+A+
Sbjct: 570 LGLATSFFNDKNGNITKDLLDILVEAK 596
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 164/384 (42%), Positives = 235/384 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ A P
Sbjct: 168 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAL 227
Query: 57 ---------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAE 105
GR P++LVLAPTRELA QI +E + + RS + +V GG +I +
Sbjct: 228 RAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRS--RVRPCVVYGGADIGQ 285
Query: 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN- 164
Q +L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 286 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 345
Query: 165 -LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKV 221
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++
Sbjct: 346 TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEL 402
Query: 222 DRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 281
D+ S LT+VFVE K D + + L EG ++HG R+Q DR
Sbjct: 403 DKRSFLLDLLNATGKDS-----LTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDR 457
Query: 282 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 341
E AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G
Sbjct: 458 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 517
Query: 342 ATSFYTDRDMLLVAQIKKAIVDAE 365
ATSF+ +R++ + + +V+A+
Sbjct: 518 ATSFFNERNINITKDLLDLLVEAK 541
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 164/383 (42%), Positives = 234/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 191 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 250
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 251 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 308
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 309 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 368
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 369 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEESD 425
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 426 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 480
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 481 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 540
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 541 TSFFNERNINITKDLLDLLVEAK 563
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 164/383 (42%), Positives = 234/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 251
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEESD 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 542 TSFFNERNINITKDLLDLLVEAK 564
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 164/383 (42%), Positives = 234/383 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 251
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEESD 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 542 TSFFNERNINITKDLLDLLVEAK 564
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 164/383 (42%), Positives = 233/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 251
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 252 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEESD 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R+ + + +V+A+
Sbjct: 542 TSFFNERNANITKDLLDLLVEAK 564
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 163/383 (42%), Positives = 232/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 191 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 250
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 251 RAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 308
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 309 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 368
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 369 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEAD 425
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S L +VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 426 KRSFLLDLLNATGKDS-----LILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 480
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 481 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 540
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 541 TSFFNERNINITKDLLDLLVEAK 563
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 163/383 (42%), Positives = 232/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 190 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 249
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 250 RAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 307
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 308 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 367
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 368 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEAD 424
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S L +VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 425 KRSFLLDLLNATGKDS-----LILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 479
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 480 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 539
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 540 TSFFNERNINITKDLLDLLVEAK 562
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 159/378 (42%), Positives = 230/378 (60%)
Query: 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC--VAQTPVG-- 58
++ Y +PT +Q A+P+ ++GRDL+ CA+TGSGKTAAF +P++ + P
Sbjct: 309 NVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQS 368
Query: 59 ------RGDGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELR 111
R PL LVLAPTRELA QI +E K + RS + A++ GG N +EQ EL
Sbjct: 369 TRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRS--RMRPAVLYGGNNTSEQMRELD 426
Query: 112 GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPD-- 167
G ++VATPGR D + +G L + F++LDEADRMLDMGFEPQIR +++ N+P
Sbjct: 427 RGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTG 486
Query: 168 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXX 227
+ QTL+FSAT P +I+ LA ++L++ + + VG+V S + N+ Q + V E +K R
Sbjct: 487 QRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDK--RSYLL 544
Query: 228 XXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287
LT++FVE K D + E L ++HG R Q +RE ALR
Sbjct: 545 DLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRC 604
Query: 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
FR+G ILVAT VA+RGLD+ V HV+N DLP VE+YVHRIGRTGR G++G ATSF+
Sbjct: 605 FRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN 664
Query: 348 DRDMLLVAQIKKAIVDAE 365
+++ + + + + +++ +
Sbjct: 665 EKNRNICSDLLELLIETK 682
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 165/383 (43%), Positives = 233/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 192 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 251
Query: 57 -----VGR-G---DGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR G P++LVLAPTRELA QI +E + S RS +V GG +I +Q
Sbjct: 252 KAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVLPCVVYGGADIGQQ 309
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDT 369
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEEAD 426
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 427 KRSFLLDLLNATGTDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 481
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 482 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLA 541
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 542 TSFFNERNINISKDLLDLLVEAK 564
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 163/388 (42%), Positives = 233/388 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +I YTRPT +Q A+P+ + RDL+ CA+TGSGKTAAF +P++ ++ P
Sbjct: 235 MGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEAL 294
Query: 57 --------------VGRGDGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGT 101
V R P++LVLAPTRELA QI E + + RS + +V GG
Sbjct: 295 QATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRS--RVRPCVVYGGA 352
Query: 102 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161
+I +Q +L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +
Sbjct: 353 DIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRI 412
Query: 162 MQN--LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE 217
++ +P K QT++FSAT P EI+ LA+++L + + + VG+V S + N+ Q + V E
Sbjct: 413 VEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEE 472
Query: 218 NEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 277
N+K R LT+VFVE K D + + L EG ++HG R+
Sbjct: 473 NDK--RSFLLDLLNATGKDS------LTLVFVETKKGADALEDFLYREGYACTSIHGDRS 524
Query: 278 QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG 337
Q DRE AL FR+G I+VAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G
Sbjct: 525 QRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 584
Query: 338 SMGQATSFYTDRDMLLVAQIKKAIVDAE 365
++G ATSFY D++ + + +V+A+
Sbjct: 585 NLGLATSFYNDKNSNITKDLLDILVEAK 612
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 158/368 (42%), Positives = 226/368 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGR 59
+++I +++P+ IQ+QA P+ L G D++G A+TG+GKT AF +P + H Q TP G
Sbjct: 295 LEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGT 354
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
G LVLAPTRELA QIE EVK S K V GG N Q S+L G I++
Sbjct: 355 RGGANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQISDLERGAEIIIC 412
Query: 120 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 178
TPGR D + +S +++++LDEADRMLDMGFEPQIR+VM ++ PD+ QT++ SAT
Sbjct: 413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDR-QTIMTSATW 471
Query: 179 PVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
P + LAQ Y+ +P+QV VG + + T +V QI+ K+ E++ +D+ K
Sbjct: 472 PPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQII-KLMEDD-MDKFNTITSFV-----K 524
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+ I+F RK R D++S L +G +HG R+Q DRE A+ D ++G ILV
Sbjct: 525 NMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILV 584
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVASRGLD+ + HV+N D P +E+YVHR+GRTGR G G + SF+T D + ++
Sbjct: 585 ATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKEL 644
Query: 358 KKAIVDAE 365
+ + +AE
Sbjct: 645 IEILQEAE 652
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 150/362 (41%), Positives = 222/362 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT+IQ Q +PVALSGRD++G A TGSGKT F +P++ C+ Q P R +GP L++
Sbjct: 213 PTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLII 272
Query: 69 APTRELAQQIEKEV----KALSRS-LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+QI + AL ++ L + + +GG I EQ ++R G+ IVVATPGR
Sbjct: 273 VPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGR 332
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
D L + +L +++LDEADRMLDMGFE +I+ + + QTLLFSATMP +I+
Sbjct: 333 LSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQ 392
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L P+ V VG+ + + NV+Q LE V K+ R P
Sbjct: 393 FFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTS----------P 442
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
++F E+K D + E L+ +G+ ++HGG++QSDR + + FR ++LVATDVAS
Sbjct: 443 KVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVAS 502
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD G+ HV+N D+P+ +E+YVHRIGRTGR G G AT+F + +M +++ +K+ +
Sbjct: 503 KGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLA 562
Query: 363 DA 364
+A
Sbjct: 563 EA 564
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 156/379 (41%), Positives = 231/379 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC--VAQTPVG 58
+++I+ +T+PT +Q ++P+ +GRDL+ CA+TGSGKT F P++ +P
Sbjct: 154 LENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQP 213
Query: 59 RGDG--------PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSE 109
G P A+++APTRELA QI E K + RS K +V GG+ I Q E
Sbjct: 214 ESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSW--VKACVVYGGSPIGNQLRE 271
Query: 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---P 166
+ G ++VATPGR D L++G SL+ V +++LDEADRMLDMGFEPQIR ++++ P
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331
Query: 167 -DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXX 225
+ QTL+FSAT P +I+ LA+++L+D + + VG+V S + N+ Q KV E D+
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQ---KVLYVENQDKKS 388
Query: 226 XXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285
LT++FVE K D++++ L+ + A A+HG R QS+RE AL
Sbjct: 389 ALLDLLSASTDG------LTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERAL 442
Query: 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
FR+G+ +LVAT VA+RGLD+ V HV+N DLP V+DYVHRIGRTGR G+ G AT+F
Sbjct: 443 AAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAF 502
Query: 346 YTDRDMLLVAQIKKAIVDA 364
+ + +V + + + +A
Sbjct: 503 FNSENSNIVKGLHEILTEA 521
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 151/365 (41%), Positives = 225/365 (61%)
Query: 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 62
++ + ++ +PT IQ+ + P+A+SGRD++ A+TGSGKT AF +P + H Q RG+G
Sbjct: 143 ELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEG 202
Query: 63 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
P LVL PTRELAQQ+++ SL K + GG + Q +L GV IVVATPG
Sbjct: 203 PAVLVLLPTRELAQQVQEVSIDFCHSL-GLKMTCLFGGASKGPQARDLERGVDIVVATPG 261
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVE 181
R LD L G T++ + S+++LDEADRMLDMGFEPQI++++ + PD+ QTL+FSAT P E
Sbjct: 262 RLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDR-QTLMFSATWPKE 320
Query: 182 IEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+ ALA ++ D + VG + + N+ Q+++ + E+ K + K C
Sbjct: 321 VRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAK--QAKLMELLNHIMNQKECK 378
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
TI+FVE K + DE++ A+ +G + +HG +NQ +R+ L++F+ G T I++ATD
Sbjct: 379 ----TIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD 434
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
VA+RGLDV + V+N D P EDYVHRIGRTGR G A +F+T + + K
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKV 494
Query: 361 IVDAE 365
+ +A+
Sbjct: 495 LDEAK 499
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 162/383 (42%), Positives = 230/383 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 191 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 250
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG + +Q
Sbjct: 251 KAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADTVQQ 308
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 309 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 368
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++D
Sbjct: 369 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEELD 425
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + L E ++HG R+Q DRE
Sbjct: 426 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDRE 480
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 481 EALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 540
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 541 TSFFNERNLNITKDLLDLLVEAK 563
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 153/367 (41%), Positives = 226/367 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I+ Y +PT+IQ QA+P+ LSGRD++G A+TGSGKTAAF +PMI H + Q + R
Sbjct: 240 MSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRD 299
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+ ++ APTRELA QI E K S++ + + V GG + EQ EL+ G IVVAT
Sbjct: 300 EGPIGVICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+ ++ R S+++LDEADRM D+GFEPQ+R ++ + PD+ QTLLFSATMP
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDR-QTLLFSATMP 417
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV-SENEKVDRXXXXXXXXXXXXXKS 238
++E LA+E L+DP++V VG+V ++ Q++ + S+ EK+
Sbjct: 418 WKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGD-- 475
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
+VF +K DE+ L ALHG ++Q+ R L+ F++G ++L+A
Sbjct: 476 ------VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIA 529
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM-GQATSFYTDRDMLLVAQI 357
TDVA+RGLD+ + VVN D+ K ++ +VHRIGRTGR G G A + T R+ ++
Sbjct: 530 TDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGEL 589
Query: 358 KKAIVDA 364
++V A
Sbjct: 590 VNSLVAA 596
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 164/386 (42%), Positives = 233/386 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSGKTAAF +P++ P
Sbjct: 193 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEAL 252
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG +I +Q
Sbjct: 253 KAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADIGQQ 310
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 311 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 370
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E+ D
Sbjct: 371 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEESD 427
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + + L EG ++HG R+Q DRE
Sbjct: 428 KRSFLLDLLNATGKDS-----LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 482
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ- 341
AL FR+G + ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G
Sbjct: 483 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLI 542
Query: 342 --ATSFYTDRDMLLVAQIKKAIVDAE 365
ATSF+ +R++ + + +V+A+
Sbjct: 543 GLATSFFNERNINITKDLLDLLVEAK 568
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 728 (261.3 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 157/362 (43%), Positives = 225/362 (62%)
Query: 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72
TSIQAQA+P +SGRD++G A+TGSGKT AF IPM +H Q P+ +GP+ L++ PTR
Sbjct: 565 TSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLENMEGPIGLIMTPTR 624
Query: 73 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL--QQ 130
ELA QI K+ K ++L+ + GG I +Q +EL+ G I+V TPGR +D L
Sbjct: 625 ELATQIHKDCKPFLKALN-LRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANA 683
Query: 131 GN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQE 188
G T+L RV++V+LDEADRM DMGFEPQ+ +++ N+ PD+ QT+LFSAT P +EALA++
Sbjct: 684 GRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDR-QTVLFSATFPRNMEALARK 742
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
LT P+++ VG S + QI+E +E +K R +++F
Sbjct: 743 TLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENED---ARSLIF 799
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
V+R+ D + L+ +G +++HGG++Q DR+S + DF+ G +L+AT VA+RGLDV
Sbjct: 800 VDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDV 859
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGN 368
+ VVN D P +EDYVHR GRTGR G+ G A +F T+ I KA+ +SG
Sbjct: 860 KQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKAL--KQSGQ 917
Query: 369 AV 370
V
Sbjct: 918 EV 919
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 155/368 (42%), Positives = 226/368 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K ++ + PT IQ Q P+ALSG+D++G AETGSGKT AF +P H +AQ + G
Sbjct: 125 IKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG 184
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA+QI +E S + GG + Q L+ GV I++A
Sbjct: 185 DGPIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIAC 243
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+Q T+L RV++++LDEAD+MLDMGFE QIR+++ + PD+ QTL++SAT P
Sbjct: 244 PGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDR-QTLMWSATWP 302
Query: 180 VEIEALAQEYLTD-PVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXXXK 237
E++ALA++ + P+QV VG ++ I Q + + E+EK+ +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
IVFVE K D +++AL +G+ A+ +HG + Q +R L +F+ G + I++
Sbjct: 363 -------IIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMI 415
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVASRGLD+ V +V+N D P +EDYVHRIGRTGR GS G + +F T L +
Sbjct: 416 ATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Query: 358 KKAIVDAE 365
K + ++E
Sbjct: 476 VKILRESE 483
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 155/368 (42%), Positives = 226/368 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K ++ + PT IQ Q P+ALSG+D++G AETGSGKT AF +P H +AQ + G
Sbjct: 125 IKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYG 184
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ LVLAPTRELA+QI +E S + GG + Q L+ GV I++A
Sbjct: 185 DGPIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIAC 243
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D L+Q T+L RV++++LDEAD+MLDMGFE QIR+++ + PD+ QTL++SAT P
Sbjct: 244 PGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDR-QTLMWSATWP 302
Query: 180 VEIEALAQEYLTD-PVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXXXK 237
E++ALA++ + P+QV VG ++ I Q + + E+EK+ +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
IVFVE K D +++AL +G+ A+ +HG + Q +R L +F+ G + I++
Sbjct: 363 -------IIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMI 415
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVASRGLD+ V +V+N D P +EDYVHRIGRTGR GS G + +F T L +
Sbjct: 416 ATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Query: 358 KKAIVDAE 365
K + ++E
Sbjct: 476 VKILRESE 483
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 697 (250.4 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
Score = 41 (19.5 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 328 HRIGRTGRGGSMGQ 341
HR G T GGS G+
Sbjct: 852 HRHGETRHGGSAGR 865
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 157/379 (41%), Positives = 233/379 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ--TPVG 58
+++I+ +T+PT +Q ++P+ +GRDL+ CA+TGSGKT F P++ + PV
Sbjct: 198 VENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVP 257
Query: 59 RGDG--------PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSE 109
+G P LV+APTREL QI +E K S RS + +V GG +I +Q
Sbjct: 258 ESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSW--VRACVVYGGADIGQQMRN 315
Query: 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLP- 166
+ G ++VATPGR D L +G SL+ + +++LDEADRMLDMGFEPQIR +++ ++P
Sbjct: 316 MDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPA 375
Query: 167 -DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXX 225
QTL+FSAT P +I+ LA+++L D V + VG+V S + N+ Q + V ++EK
Sbjct: 376 VKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEK----- 430
Query: 226 XXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285
S + LTIVF E K D +++ L +G A A+HG R+Q +RE AL
Sbjct: 431 ----KSVILDLLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKAL 486
Query: 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
F+NG+ ILVAT VA+RGLD+ V+HV+N DLP ++DYVHRIGRTGR G++G AT+F
Sbjct: 487 AAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAF 546
Query: 346 YTDRDMLLVAQIKKAIVDA 364
+ + +V + + + +A
Sbjct: 547 FNRNNKNVVKGLIELLSEA 565
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 161/383 (42%), Positives = 229/383 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP---- 56
M +IE YTRPT +Q A+P+ RDL+ CA+TGSG TAAF +P++ P
Sbjct: 185 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEAL 244
Query: 57 --------VGRGDG-PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
GR P++LVLAPTRELA QI +E + S RS + +V GG + +Q
Sbjct: 245 KAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--RVRPCVVYGGADTVQQ 302
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-- 164
+L G ++VATPGR +D +++G L +++LDEADRMLDMGFEPQIR +++
Sbjct: 303 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 362
Query: 165 LPDK--HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
+P K T++FSAT P EI+ LA+++L + + + VG+V S + N+ Q KV E++D
Sbjct: 363 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ---KVVWVEELD 419
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ S LT+VFVE K D + L E ++HG R+Q DRE
Sbjct: 420 KRSFLLDLLNATGRDS-----LTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDRE 474
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G ILVAT VA+RGLD+ V HV+N DLP +E+YVHRIGRTGR G++G A
Sbjct: 475 EALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 534
Query: 343 TSFYTDRDMLLVAQIKKAIVDAE 365
TSF+ +R++ + + +V+A+
Sbjct: 535 TSFFNERNLNITKDLLDLLVEAK 557
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 148/351 (42%), Positives = 215/351 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +P+ALSGRD +G A+TGSGKTAAF P++ H + Q + G
Sbjct: 269 MHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPG 328
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+GP+A+++ PTREL QQI E K ++ ++ V GG ++ EQ L+ G IVV T
Sbjct: 329 EGPIAVIVCPTRELCQQIHAECKRFGKAY-GLRSVAVYGGGSMWEQAKALQEGAEIVVCT 387
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ TSL RV+F++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 388 PGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 446
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + ++ QI+E + + D+
Sbjct: 447 KKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQ--DKWGWLTRRLVEFTSAGS 504
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
+VFV +K C+E++ L+ EG LHG +QS+R + DF+ + +LVAT
Sbjct: 505 -----VLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVAT 559
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + VVN D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 560 DVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKD 610
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 154/353 (43%), Positives = 212/353 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQAQA+P ++GRD++G A+TG+GKTAAF +P++ H + Q GR ALV+
Sbjct: 21 YETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL-HRLQQGERGR---VRALVI 76
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA+QI L R ++ V GG + Q +L+ G +VVA PGR LDH+
Sbjct: 77 APTRELAEQINDSFVTLGRQT-RLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLDHI 135
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
QG LSR+ ++LDEAD+M DMGF P IR V+++LP + QTLLFSATMP++I LAQ+
Sbjct: 136 AQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQD 195
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L DPV V+VG V+ P V L V ++ K ++F
Sbjct: 196 ILVDPVTVQVGTVA-PAVTVAHALYPVEQHLKTPLLLELLRHTDTES---------VLIF 245
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K R + E L G A +L G +Q+ R++AL FR+G+ ILVATD+A+RG+DV
Sbjct: 246 TRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDV 305
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
V+HV+N D+P T E Y+HRIGRTGR G A + T D +V I++++
Sbjct: 306 SQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSL 358
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 714 (256.4 bits), Expect = 2.2e-70, P = 2.2e-70
Identities = 154/357 (43%), Positives = 218/357 (61%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PTSIQAQA+P SGRD++G A+TGSGKT AF +PM +H Q P+ G+GP+A+++
Sbjct: 438 YEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIM 497
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QI +E K + L+ + GG I +Q ++L+ G IVV TPGR +D L
Sbjct: 498 TPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVL 556
Query: 129 QQ--GN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 184
G T+L R ++++LDEADRM D+GFEPQ+ ++ N+ PD+ QT+LFSAT P +EA
Sbjct: 557 SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDR-QTVLFSATFPRAMEA 615
Query: 185 LAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPL 244
LA++ L PV++ VG S + V QI+E E K R
Sbjct: 616 LARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDV-----R 670
Query: 245 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 304
T+VFV+R+ D + L+ G + ++HGG++Q DR+S + D++ G ++L+AT V +R
Sbjct: 671 TLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVAR 730
Query: 305 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
GLDV + VVN D P +EDYVHR+GRTGR G G A +F T I KA+
Sbjct: 731 GLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKAL 787
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 151/364 (41%), Positives = 226/364 (62%)
Query: 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALV 67
+PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L+
Sbjct: 199 QPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLI 258
Query: 68 LAPTRELAQQ----IEKEVKALSR-SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
+ P+RELA+Q IE + L SL + A+ +GG ++ EQ ++ GV ++VATPG
Sbjct: 259 ICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPG 318
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEI 182
R +D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I
Sbjct: 319 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKI 378
Query: 183 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
+ A+ L P+ + VG+ + + +V+Q +E V E K+ K+ P
Sbjct: 379 QNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKM-------VYLLECLQKT--PP 429
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
P+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR+G ++LVATDVA
Sbjct: 430 PV-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVA 488
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAI 361
S+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K +
Sbjct: 489 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALL 548
Query: 362 VDAE 365
++A+
Sbjct: 549 LEAK 552
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 155/379 (40%), Positives = 230/379 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCV-------- 52
M++I+ +T+PT +Q ++P+ GRDL+ CA+TGSGKT F P+
Sbjct: 166 MENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVP 225
Query: 53 --AQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSE 109
AQ+ R P ALVLAPTRELA QI +E + + RS + +V GG I Q E
Sbjct: 226 EKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSW--VRPCVVYGGAPIGNQMRE 283
Query: 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLP- 166
+ G ++VATPGR D L++G SL+ + +++LDEADRMLDMGFEPQIR +++ ++P
Sbjct: 284 VDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPS 343
Query: 167 -DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXX 225
+ QTL+FSAT PV+I+ LA+++L + + + VG+V S + N+ Q + V + +K
Sbjct: 344 VENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDK----- 398
Query: 226 XXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285
S LT++FVE K D++++ L+ + A A+HG R Q++RE AL
Sbjct: 399 ----KSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERAL 454
Query: 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
F+ +ILVAT VA+RGLD+ V HV+N DLP ++DYVHRIGRTGR G+ G ATSF
Sbjct: 455 SAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSF 514
Query: 346 YTDRDMLLVAQIKKAIVDA 364
+ + +V + + + +A
Sbjct: 515 FNSNNQNIVKGLMEILNEA 533
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 165/379 (43%), Positives = 234/379 (61%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--- 57
M+++ Y++PT +Q ++P L+ RDL+ CA+TGSGKTAAF +P+IQH +A P
Sbjct: 151 MENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVK 210
Query: 58 ------GRGDG-PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSE 109
GR P ALVL+PTRELA QI KE S + +TAI+ GG N +Q +
Sbjct: 211 PPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYK-SNIQTAILYGGRENYRDQVNR 269
Query: 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM-QNLPDK 168
LR G I++ATPGR +D ++QG L+ +++LDEADRMLDMGFEPQIR+++ Q +P K
Sbjct: 270 LRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMPPK 329
Query: 169 --HQTLLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXX 225
T +FSAT P EI+ LA+++L D + + VG+V S + N+ Q L V+E EK
Sbjct: 330 TARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLM 389
Query: 226 XXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285
H L +VFVE K +E++ L + + +V++HG Q +RE L
Sbjct: 390 EILMNE--------HSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 441
Query: 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
FR+G ILVAT VA+RGLD+ V HV+N DLP ++YVHRIGRTGR G++G ATSF
Sbjct: 442 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSF 501
Query: 346 YTDRDMLLVAQIKKAIVDA 364
+ D++ + +K IV++
Sbjct: 502 FNDKNRGIGRDLKNLIVES 520
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 149/364 (40%), Positives = 229/364 (62%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 67
++ +P++IQ+QA+P LSGRD++G A+TGSGKT ++ +PM++H Q GP+ L+
Sbjct: 313 KFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLI 372
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L+PTRELA QIEKE+ ++ ++ + GG++I Q +EL+ GV I+V TPGR +D
Sbjct: 373 LSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDL 432
Query: 128 L--QQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 183
L G +L R +FV+LDEADRM D+GFEPQ+ +++ + PD+ QT+LFSAT P ++E
Sbjct: 433 LAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR-QTVLFSATFPRKME 491
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQ--ILEKVS--ENEKVDRXXXXXXXXXXXXXKSC 239
LA++ LTDPV + VG +S + Q +L + S E +K + +
Sbjct: 492 TLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIE 551
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILV 297
HP +VF E++ DE+ L++ A+A+HGG++Q DR+ A+++F + NIL+
Sbjct: 552 HPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILI 611
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
AT +A+RGLDV + V+N D P +EDYVHR+GRTGR G+ G A +F + V +
Sbjct: 612 ATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNL 671
Query: 358 KKAI 361
KA+
Sbjct: 672 VKAL 675
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 204 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 323
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 383
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 434
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 435 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 493
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 494 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 553
Query: 363 DAE 365
+A+
Sbjct: 554 EAK 556
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 204 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 323
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 383
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 434
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 435 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 493
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 494 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 553
Query: 363 DAE 365
+A+
Sbjct: 554 EAK 556
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 231 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 290
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 291 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 350
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 351 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 410
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 411 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 461
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 462 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 520
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 521 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 580
Query: 363 DAE 365
+A+
Sbjct: 581 EAK 583
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 222 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 281
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 282 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 341
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 342 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 401
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 402 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 452
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 453 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 511
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 512 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 571
Query: 363 DAE 365
+A+
Sbjct: 572 EAK 574
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 204 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 323
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 383
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 434
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 435 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 493
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 494 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 553
Query: 363 DAE 365
+A+
Sbjct: 554 EAK 556
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 149/364 (40%), Positives = 229/364 (62%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 67
++ +P++IQ+QA+P LSGRD++G A+TGSGKT ++ +PM++H Q GP+ L+
Sbjct: 313 KFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLI 372
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L+PTRELA QIEKE+ ++ ++ + GG++I Q +EL+ GV I+V TPGR +D
Sbjct: 373 LSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDL 432
Query: 128 L--QQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 183
L G +L R +FV+LDEADRM D+GFEPQ+ +++ + PD+ QT+LFSAT P ++E
Sbjct: 433 LAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDR-QTVLFSATFPRKME 491
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQ--ILEKVS--ENEKVDRXXXXXXXXXXXXXKSC 239
LA++ LTDPV + VG +S + Q +L + S E +K + +
Sbjct: 492 TLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNYQIE 551
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILV 297
HP +VF E++ DE+ L++ A+A+HGG++Q DR+ A+++F + NIL+
Sbjct: 552 HPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILI 611
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
AT +A+RGLDV + V+N D P +EDYVHR+GRTGR G+ G A +F + V +
Sbjct: 612 ATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNL 671
Query: 358 KKAI 361
KA+
Sbjct: 672 VKAL 675
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 204 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 323
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 383
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 434
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 435 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 493
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 494 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 553
Query: 363 DAE 365
+A+
Sbjct: 554 EAK 556
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 153/363 (42%), Positives = 224/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 204 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 263
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS + A+ +GG ++ EQ +R GV ++VATPGR
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGR 323
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 383
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 434
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 435 V-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 493
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 494 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 553
Query: 363 DAE 365
+A+
Sbjct: 554 EAK 556
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 148/351 (42%), Positives = 214/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E + K +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRLVEFTSSGS--- 499
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 500 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 554
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 555 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 605
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 153/363 (42%), Positives = 223/363 (61%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P + +GP L++
Sbjct: 203 PTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLII 262
Query: 69 APTRELAQQIEKEVKALSRSL--DS---FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q ++ R L DS A+ +GG ++ EQ +R GV I+VATPGR
Sbjct: 263 CPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGR 322
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D LQ+ SL ++ LDEADRM+DMGFE IR + + QTLLFSATMP +I+
Sbjct: 323 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQ 382
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + +VIQ +E V E K+ K+ P P
Sbjct: 383 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM-------VYLLECLQKT--PPP 433
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F ++K D + E L+ +G+ AVA+HGG++Q +R A+ FR G ++LVATDVAS
Sbjct: 434 V-LIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 492
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362
+GLD + HV+N D+P+ +E+YVHRIGRTGR G+ G AT+F D ++ +K ++
Sbjct: 493 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLL 552
Query: 363 DAE 365
+A+
Sbjct: 553 EAK 555
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 149/354 (42%), Positives = 217/354 (61%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL-ALV 67
Y PT IQ QA+P L GRDL+ A+TG+GKTA FT+P++QH + + P +G P+ AL+
Sbjct: 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L PTRELA QI + V+ S+ L+ ++ +V GG +I Q +LRGGV ++VATPGR LD
Sbjct: 81 LTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDL 139
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187
Q L +V ++LDEADRMLDMGF IR V+ LP K Q LLFSAT +I+ALA+
Sbjct: 140 EHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAE 199
Query: 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
+ L +P++++V + ++ + V Q + V + K + + +V
Sbjct: 200 KLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGN---------WQQVLV 250
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K + ++E L +G+ + A+HG ++Q R AL DF++G +LVATD+A+RGLD
Sbjct: 251 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLD 310
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ + HVVN +LP EDYVHRIGRTGR + G+A S + L+ I+K +
Sbjct: 311 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 154/358 (43%), Positives = 213/358 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
++ PT IQAQ+ P+A+ GRD++ A+TGSGKT + IP H R GP LVL
Sbjct: 178 FSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVL 236
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
+PTRELA QI++E RS + GG Q +L G IVVATPGR D L
Sbjct: 237 SPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ SL ++S+++LDEADRMLDMGFEPQIR++++ +P K QTL+++AT P + +A +
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAAD 355
Query: 189 YLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
L +P QV +G V AN + Q +E V+ EK R +S P I
Sbjct: 356 LLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQIL--------RSQEPGSKVI 407
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+F K CD+++ L + A A+HG ++Q +R++ L FR+G T +LVATDVA+RGL
Sbjct: 408 IFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGL 466
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV + VVN D P VEDYVHRIGRTGR G+ GQA +F+ D+D + + K + A
Sbjct: 467 DVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGA 524
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 154/382 (40%), Positives = 229/382 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCV----AQTP 56
+++I+ YT+PT +Q ++P+ SGRDL+ CA+TGSGKTA F P++ A P
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVP 240
Query: 57 VGRGDG---------PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQ 106
V + G P L+LAPTREL QI +E + RS + V GG +I Q
Sbjct: 241 VDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSW--VRPCAVYGGADIRAQ 298
Query: 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166
++ G ++ ATPGR +D + +G SL+ + F++LDEADRMLDMGFEPQIR +++
Sbjct: 299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGAD 358
Query: 167 ----DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 222
++ QTL+FSAT P +I+ LA+++L D V + VG+V S + N+ Q + V ++EK
Sbjct: 359 MTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEK-- 416
Query: 223 RXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE 282
+ P LT++FVE K D +++ L+ A ++HG R Q +RE
Sbjct: 417 ------RSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERE 470
Query: 283 SALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342
AL FR+G T+I+VAT VASRGLD+ V HV+N DLP ++DYVHRIGRTGR G+ GQA
Sbjct: 471 RALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQA 530
Query: 343 TSFYTDRDMLLVAQIKKAIVDA 364
+F+ + + ++ + + +A
Sbjct: 531 VAFFNRNNKGIAKELIELLQEA 552
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 158/386 (40%), Positives = 221/386 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K +E Y +P+ IQ A+P+ L RD++G AETGSGKTAAF +PM+ + P+
Sbjct: 325 LKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEE 384
Query: 61 ---DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+GP A+V+APTRELAQQIE+E + L F+ +VGG +I EQ ++ G IV
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTSIVGGQSIEEQGLKITQGCEIV 443
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH-------- 169
+ATPGR +D L++ L++ ++V+LDEADRM+DMGFEPQ+ V+ +P +
Sbjct: 444 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEE 503
Query: 170 ---------QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 220
T +FSATMP +E LA++YL +PV V +G T + Q + + E+EK
Sbjct: 504 ELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEK 563
Query: 221 VDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSD 280
R IVFV K CD +++ L G LHGG++Q
Sbjct: 564 FFRLQKLLDELGEKTA---------IVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQ 614
Query: 281 RESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMG 340
RE +L FR N+LVATDV RG+D+ VAHV+N D+PK +E Y HRIGRTGR G G
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
Query: 341 QATSFYTDRDMLLVAQIKKAIVDAES 366
ATSF T D + +K+ +V + S
Sbjct: 675 VATSFLTLHDTEVFYDLKQMLVQSNS 700
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 704 (252.9 bits), Expect = 1.5e-68, P = 1.5e-68
Identities = 152/357 (42%), Positives = 219/357 (61%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+ +PT IQ QA+P +SGRDL+G A+TGSGKT AF +PM +H + Q + GDG +A+++
Sbjct: 530 FEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIM 589
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTREL QI K+++ S+SL + V GGT I+EQ +EL+ G I+V TPGR +D L
Sbjct: 590 APTRELCMQIGKDIRKFSKSL-GLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 648
Query: 129 QQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 184
+ T+L RV++V+LDEADRM DMGFEPQ+ ++ N+ PD+ QT++FSAT P ++EA
Sbjct: 649 AANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR-QTVMFSATFPRQMEA 707
Query: 185 LAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPL 244
LA+ L P++V VG S V Q + ++++ K +
Sbjct: 708 LARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGS-------- 759
Query: 245 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 304
IVFV+++ D + L+ ++LHGG +Q DR+S + DF++G +L+AT VA+R
Sbjct: 760 IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAAR 819
Query: 305 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
GLDV + VVN D+P EDYVHR GRTGR G G A +F T I +A+
Sbjct: 820 GLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAM 876
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 147/351 (41%), Positives = 212/351 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHAEGKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RVS+++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E +
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L EG + LHG +QS+R + DF+ +LVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 154/363 (42%), Positives = 221/363 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC-----VAQT 55
+ +I Y PT +Q ++P+ ++GRDL+ CA+TGSGKT F P++ A
Sbjct: 198 ISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPP 257
Query: 56 PVGRGD-G------PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQR 107
P G G P +L+LAPTREL QI E + + RS + +V GG +I Q
Sbjct: 258 PSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSW--VRPCVVYGGADIGSQL 315
Query: 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NL 165
++ G ++VATPGR +D +++G SL + ++ILDEADRMLDMGFEPQIR +++ ++
Sbjct: 316 RQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDM 375
Query: 166 PDKH--QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 223
P+ + QTL+FSAT P +I+ LA+++L D V + VG+V S + N+ Q +E V +++K R
Sbjct: 376 PNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDK--R 433
Query: 224 XXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 283
LT++FVE K D +SE L+ + A A+HG R Q +RE
Sbjct: 434 SVLLDILHTHGTTG------LTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERER 487
Query: 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343
AL FR+G ILVAT VA+RGLD+ V HV+N DLP ++DYVHRIGRTGR G+ G AT
Sbjct: 488 ALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 547
Query: 344 SFY 346
+F+
Sbjct: 548 AFF 550
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 154/383 (40%), Positives = 227/383 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ---TPVGRGDGPLA 65
Y +P+ IQ Q++P++L+GRD+LG AETGSGKT AF IPM+ + Q T DGP A
Sbjct: 433 YEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYA 492
Query: 66 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL 125
LV+APTREL QQIEKE + ++ F+ +VGG +I +Q ++ G I++ATPGR
Sbjct: 493 LVMAPTRELVQQIEKETRNFAQHF-GFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLN 551
Query: 126 DHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP------------DKHQ--- 170
D L++ L++ ++++LDEAD M+D+GFEPQ+ V+ +P +K +
Sbjct: 552 DCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDR 611
Query: 171 ------TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV-SENEKVDR 223
T+LFSATMP +E L+++YL P + +G+ + Q + V SEN+K +
Sbjct: 612 SHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEH 671
Query: 224 XXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 283
K P P+ I+FV +K CD ++ L + LH GR+Q RE+
Sbjct: 672 LTQLI--------KDGPPPPI-IIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREA 722
Query: 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343
AL F+ +L+AT VASRG+ V GV HV+N D+PK +EDY HRIGRTGR GS G A+
Sbjct: 723 ALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLAS 782
Query: 344 SFYTDRDMLLVAQIKKAIVDAES 366
SF TD+D+ ++ +K+ + +
Sbjct: 783 SFITDKDVEIMYDLKQILTSTNN 805
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 145/365 (39%), Positives = 225/365 (61%)
Query: 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALV 67
+P+ IQ Q +PV LSGRD++G A TGSGKT FT+PM+ + + P+ +G+GP L+
Sbjct: 244 KPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLI 303
Query: 68 LAPTRELAQQIEKEVKALSRSLDS------FKTAIVVGGTNIAEQRSELRGGVSIVVATP 121
L P+RELA+Q V + + +L +T + +GG ++ EQ + GV +++ATP
Sbjct: 304 LCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATP 363
Query: 122 GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 181
GR LD L + + ++ LDEADR++D+GFE IR V+ N ++ QTLLFSATMP +
Sbjct: 364 GRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKK 423
Query: 182 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHP 241
I+ A+ L PV+V VG+ + NV Q +E V K+ K+ P
Sbjct: 424 IQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKI-------VYLLECLQKT--P 474
Query: 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301
P+ ++F E K D++ E L+ + + AV++HG ++Q +RESA++ FR G ++LVATDV
Sbjct: 475 PPV-LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDV 533
Query: 302 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM-LLVAQIKKA 360
AS+GLD + HV+N D+P+ +E+Y+HRIGRTGR G+ G AT+F + L+ +K
Sbjct: 534 ASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYL 593
Query: 361 IVDAE 365
+++A+
Sbjct: 594 LIEAK 598
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 153/358 (42%), Positives = 211/358 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
++ P+ IQAQ+ P+A+ RD++ A+TGSGKT + IP H R GP LVL
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVL 307
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
+PTRELA QI+ E +S A + GG Q E+ GV IVVATPGR D L
Sbjct: 308 SPTRELATQIQVEALKFGKS-SKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ SL +VS+++LDEADRMLDMGFEPQIR+++ +P K QTL+++AT P E+ +A +
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426
Query: 189 YLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
L +P QV +G V AN + Q +E ++ EK R +S P I
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQIL--------RSQEPGSKII 478
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
+F K CD+++ L A A+HG ++Q++R+ L FR+G T +LVATDVA+RGL
Sbjct: 479 IFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGL 537
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
DV + VVN D P VEDYVHRIGRTGR G+ G A +F+ D+D + + K + A
Sbjct: 538 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGA 595
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 155/361 (42%), Positives = 218/361 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGR 59
M++I + +PT IQ+QA PV L+G DL+G A+TG+GKT A+ +P H Q P +
Sbjct: 290 MENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDK 349
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
+GP LVL PTRELA QIE E S FK+ + GG + Q + GV IV+A
Sbjct: 350 RNGPGMLVLTPTRELALQIEAECNKYSYK--GFKSICIYGGGDRNAQIKVVTSGVDIVIA 407
Query: 120 TPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 177
TPGR L+ LQ +L +++++LDEADRMLDMGFEPQI +++ ++ PD+ QT++ SAT
Sbjct: 408 TPGR-LNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDR-QTVMTSAT 465
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ-ILEKVSENEKVDRXXXXXXXXXXXXX 236
P + LA+ YL DP+ V VG + N +Q + V E+EK D
Sbjct: 466 WPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKD--------YVFDFI 517
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
P ++FV +K + D++S L +G+ +LHG R Q DRE AL+DF++G IL
Sbjct: 518 HRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRIL 577
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VATD+ASRGLDV + HV N D P+ VE+YVHR+GRTGR G G++ + T D + A+
Sbjct: 578 VATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAE 637
Query: 357 I 357
+
Sbjct: 638 L 638
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 146/343 (42%), Positives = 211/343 (61%)
Query: 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALV 67
+PT IQ Q +PV L+GRD++G A TGSGKT F +PMI + + P+ G+GP+ L+
Sbjct: 168 QPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLI 227
Query: 68 LAPTRELAQQ----IEKEVKALSRS-LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
+ P+RELA+Q +E+ V L + ++ + +GG ++ Q ++ GV IVVATPG
Sbjct: 228 VCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPG 287
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEI 182
R D L + SL ++ LDEADR++D+GFE IREV + + QTLLFSATMP +I
Sbjct: 288 RLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKI 347
Query: 183 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
+ A+ L PV V VG+ + +VIQ +E V + K+ K+ P
Sbjct: 348 QIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI-------VYLLECLQKTSPP- 399
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
++F E K D++ E L+ +G+ AVA+HGG++Q DRE A+ F+ G ++LVATDVA
Sbjct: 400 --VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVA 457
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
S+GLD + HV+N D+P +E+YVHRIGRTGR G G AT+F
Sbjct: 458 SKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 500
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 689 (247.6 bits), Expect = 1.1e-67, P = 1.1e-67
Identities = 143/354 (40%), Positives = 213/354 (60%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 71
PT IQ QA+P+ALSGRDL+ A+TGSGKTA F P I H + Q + +GDGP+AL LAPT
Sbjct: 328 PTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPT 387
Query: 72 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG 131
RELA QI E S+ KT ++ GG + +Q EL+ G I+VATPGR +D ++
Sbjct: 388 RELAHQIYLETLKYSKYF-KLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLK 446
Query: 132 NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYL 190
T L+RVS+++LDEAD+M D GF PQ+ ++ ++ PD+ QTLLFSAT +E A+ L
Sbjct: 447 ATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDR-QTLLFSATFKPNVEEFARTIL 505
Query: 191 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVE 250
+DP+++ +G + S +++ QI++ + + D+ + ++FV
Sbjct: 506 SDPIKISIGMIGSANSDITQIVQVLKSDS--DKWNWLTNQLALLLSQGS-----VLIFVS 558
Query: 251 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG 310
K +++S L G LHG +NQ +R ++ F+ G NIL+ATDVA+RGLD+
Sbjct: 559 TKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPL 618
Query: 311 VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
+ +VVN D + +E + HRIGRTGR G+ G A + T +D+ + K + A
Sbjct: 619 IKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESA 672
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 693 (249.0 bits), Expect = 1.7e-67, P = 1.7e-67
Identities = 155/367 (42%), Positives = 226/367 (61%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 67
+Y +PTSIQAQ +P ++GRDL+G A TGSGKT AF +PM +H +AQ G+G +AL+
Sbjct: 528 QYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALI 587
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
++PTRELA QI E K S+ L +TA V GG +I+EQ +EL+ G IVV TPGR +D
Sbjct: 588 MSPTRELALQIHVECKKFSKVL-GLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDI 646
Query: 128 LQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIE 183
L N T+L RV+F++LDEADRM DMGF PQI ++ ++ PD+ QT++FSAT P ++E
Sbjct: 647 LCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDR-QTIMFSATFPPKVE 705
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
+A++ L P+++ G S ++++ Q +E V E R H
Sbjct: 706 NVAKKILNKPLEIIAGGRSIVSSDIEQFVE-VRPTETRFRRLIELLSIWY------HKGQ 758
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ ++F R+ D + L ++LHG ++Q+DR+ + DF+N IL+AT +AS
Sbjct: 759 I-LIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLAS 817
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363
RGLD+ + VVN D P +EDYVHR+GRTGR G+ G A +F T + + I KA+
Sbjct: 818 RGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKAL-- 875
Query: 364 AESGNAV 370
+SG+ V
Sbjct: 876 EQSGSKV 882
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 150/363 (41%), Positives = 218/363 (60%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +PV LSGRD++G A TGSGKT F +PMI + + P+ G+GP+ALV+
Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVI 179
Query: 69 APTRELAQQIEKEVKALSRSL--DSF---KTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q V+ SL D + ++ + +GG ++ Q ++ GV IVVATPGR
Sbjct: 180 CPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGR 239
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
D L + SL + LDEADR++D+GFE IR V + + QTLLFSATMP +I+
Sbjct: 240 LKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQ 299
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A L PV V VG+ + +VIQ +E V + K+ K+ P
Sbjct: 300 IFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI-------VYLLECLQKTTPP-- 350
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
++F E K D++ E L+ +G+ AVA+HGG++Q DR+ A+ F+ G ++LVATDVAS
Sbjct: 351 -VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVAS 409
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIKKAIV 362
+GLD + HV+N D+P +E+YVHRIGRTGR G G AT+F ++ + + +K +
Sbjct: 410 KGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQ 469
Query: 363 DAE 365
+A+
Sbjct: 470 EAK 472
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 144/351 (41%), Positives = 210/351 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVA+SGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 267 MHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 326
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 327 DGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 385
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RV++++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 386 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 444
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E
Sbjct: 445 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-- 502
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L E + LHG +QS+R + +F+ ILVAT
Sbjct: 503 -----VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVAT 557
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 558 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 608
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 144/351 (41%), Positives = 210/351 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVA+SGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 260 MHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 319
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 320 DGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 378
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RV++++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 379 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 437
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E
Sbjct: 438 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-- 495
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L E + LHG +QS+R + +F+ ILVAT
Sbjct: 496 -----VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVAT 550
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 551 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 601
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 144/351 (41%), Positives = 210/351 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M I EYT+PT IQ Q +PVA+SGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 265 MHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPG 324
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+A+++ PTREL QQI E K ++ + ++ V GG ++ EQ L+ G IVV T
Sbjct: 325 DGPIAVIVCPTRELCQQIHSECKRFGKAYN-LRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +DH+++ T+L RV++++ DEADRM DMGFE Q+R + ++ PD+ QTLLFSAT
Sbjct: 384 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR-QTLLFSATFR 442
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+IE LA++ L DP++V G + +V QI+E
Sbjct: 443 KKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGS-- 500
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K +E++ L E + LHG +QS+R + +F+ ILVAT
Sbjct: 501 -----VLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVAT 555
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
DVA+RGLD+ + V+N D+ + ++ + HRIGRTGR G G A + T +D
Sbjct: 556 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 149/359 (41%), Positives = 213/359 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK I + T IQAQ +P+ LS +D++G A+TG+GKTAAF IP+++ ++P
Sbjct: 15 MKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESP---- 70
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
A+V+APTRELA Q+ +E+ + + + K + GG +I Q L+ +I+V T
Sbjct: 71 -NIQAIVIAPTRELAIQVSEELYKIGQDKRA-KVLPIYGGQDIGRQIRALKKNPNIIVGT 128
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L+ V+ V++DEAD ML+MGF I ++ N+P +HQTLLFSATMP
Sbjct: 129 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 188
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
I+ +A+ ++T+P VKV +N+ Q +V E +K D
Sbjct: 189 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS-------- 240
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
P L IVF K R DE++EAL G A +HG Q+ R ALR F+ G+ +LVATD
Sbjct: 241 P-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATD 299
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
VA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A +F T R+ ++ I++
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 358
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 527 (190.6 bits), Expect = 5.7e-67, Sum P(2) = 5.7e-67
Identities = 107/219 (48%), Positives = 152/219 (69%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +P IQAQA+P+ +SGRD +G A+TGSGKT F +PM++H Q PV GDGP+ LV+
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 475
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTREL QQI +++ S++L V GG+ +A+Q SEL+ G IVV TPGR +D L
Sbjct: 476 APTRELVQQIYSDIRKFSKALGIICVP-VYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 534
Query: 129 --QQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 184
G T+L RV+++++DEADRM DMGFEPQI ++QN+ PD+ QT+LFSAT P ++E
Sbjct: 535 CTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR-QTVLFSATFPRQVET 593
Query: 185 LAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 223
LA++ L PV+++VG S ++ Q++E E+E+ R
Sbjct: 594 LARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSR 632
Score = 189 (71.6 bits), Expect = 5.7e-67, Sum P(2) = 5.7e-67
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 281 RESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMG 340
+E ++ DF++ N+L+AT VA+RGLDV + VVN D P EDYVHR+GRTGR G G
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 341 QATSFYTDRDMLLVAQIKKAI 361
A +F ++ D + KA+
Sbjct: 713 CAVTFISEDDAKYAPDLVKAL 733
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 149/364 (40%), Positives = 218/364 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC-VAQTPVGR 59
++ I Y PT +Q QA+PV L RD++ A+TG+GKTA FT+P++Q V++ P+ R
Sbjct: 22 LRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR 81
Query: 60 GDGPL--ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
P+ AL+L PTRELA Q+ + V+A + L K +V GG +I Q + LR GV I+
Sbjct: 82 SAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLRRGVDIL 140
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177
VATPGR LD + QG +LSRV F +LDEADRMLDMGF P IR +++ LP+ Q LLFSAT
Sbjct: 141 VATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSAT 200
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
EI+ L + L P ++V + ++ A + ++ V DR K
Sbjct: 201 FSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPV------DRQRKRELLSFMIGSK 254
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+ +VF K + +S+ L ++GL + A+HG ++Q+ R AL F+ G +LV
Sbjct: 255 NWRQ---VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVA+RGLD+ + HV+N +LP +DYVHR+GRTGR + G A S + ++ L+ I
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 358 KKAI 361
+K +
Sbjct: 372 EKLL 375
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 149/364 (40%), Positives = 218/364 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC-VAQTPVGR 59
++ I Y PT +Q QA+PV L RD++ A+TG+GKTA FT+P++Q V++ P+ R
Sbjct: 22 LRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR 81
Query: 60 GDGPL--ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
P+ AL+L PTRELA Q+ + V+A + L K +V GG +I Q + LR GV I+
Sbjct: 82 SAKPVIRALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLRRGVDIL 140
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177
VATPGR LD + QG +LSRV F +LDEADRMLDMGF P IR +++ LP+ Q LLFSAT
Sbjct: 141 VATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSAT 200
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
EI+ L + L P ++V + ++ A + ++ V DR K
Sbjct: 201 FSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPV------DRQRKRELLSFMIGSK 254
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+ +VF K + +S+ L ++GL + A+HG ++Q+ R AL F+ G +LV
Sbjct: 255 NWRQ---VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVA+RGLD+ + HV+N +LP +DYVHR+GRTGR + G A S + ++ L+ I
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 358 KKAI 361
+K +
Sbjct: 372 EKLL 375
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 153/363 (42%), Positives = 218/363 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
Y +PT +Q +P+ +GRDL+ CA+TGSGKTAAF +P++Q VA + P
Sbjct: 201 YVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPE 260
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
A+++APTREL QI +E + S + +V GG N Q E+ G +++ TPGR
Sbjct: 261 AVIVAPTRELINQIYQEARKFSFGT-CVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRL 319
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--LPDKH--QTLLFSATMPV 180
LD + +G LS+V ++LDEADRMLDMGFEP +R ++ + +P K QTL+FSAT P
Sbjct: 320 LDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPE 379
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
+I+ LA ++L D + V VG V +V Q +V++ K ++
Sbjct: 380 DIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRTIGSER---- 435
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR+G +LVAT
Sbjct: 436 -----TMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVAT 490
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
VASRGLD+ V HVVN DLP T++DYVHRIGRTGR G+ G+A SFY D D+ +Q+ +
Sbjct: 491 SVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFY-DPDV--DSQLAR 547
Query: 360 AIV 362
++V
Sbjct: 548 SLV 550
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 158/371 (42%), Positives = 220/371 (59%)
Query: 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCV---------A 53
+I+ +YT+PT +Q A+P+ L RDL+ CA+TGSGKTAAF P+I + A
Sbjct: 261 NIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPA 320
Query: 54 QTP-VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRG 112
P V R P ALVLAPTRELAQQI E S + ++ GG + Q +EL
Sbjct: 321 YKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYG-SPVSSVVIYGGAEVFHQINELDR 379
Query: 113 GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPD--K 168
G I+VAT GR +D L +G SLS++ +++LDEADRMLDMGFEPQIR+++ ++P
Sbjct: 380 GCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRD 439
Query: 169 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXX 228
QTL+FSAT P +I+ LA ++L + + +KVG V + T N+ Q +E V E +K
Sbjct: 440 RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGT-TQNITQRIEYVVEEDK-----NSY 493
Query: 229 XXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 288
KS L ++FVE K CD ++ L +HG Q +RE+AL+ F
Sbjct: 494 LLDYLSGLKSDG---LCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSF 550
Query: 289 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348
R+ +T LVATD+ASRGL + V V+N DLP + YVHRIGRTGR G G A SF+ +
Sbjct: 551 RSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNE 610
Query: 349 RDMLLVAQIKK 359
++ + A++ K
Sbjct: 611 KNKPVGAELLK 621
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 147/366 (40%), Positives = 217/366 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K + EYT+PT IQAQA+P ALSGRD++G A+TGSGKTAAF PM+ H + Q + G
Sbjct: 281 IKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPG 340
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
DGP+ L+LAPTREL+ QI E K + + + GG + EQ L G I+VAT
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGK-VYNLNVVCCYGGGSKWEQSKALEQGAEIIVAT 399
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D ++ T+L RV+F++LDEADRM MGFEPQ+R + ++ PD+ Q L+FSAT
Sbjct: 400 PGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDR-QCLMFSATFK 458
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
IE LA++ L+DPV++ G ++ ++ Q + V N + + +
Sbjct: 459 KRIERLARDVLSDPVRIVQGDLNEANQDITQSVY-VFPNP-LQKWNWLLCHLVKFLSEGS 516
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
++FV +K + VS L+ + + + LHG +Q+DR + F+ +ILVAT
Sbjct: 517 -----VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVAT 571
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
DVA+RGLD+ + +VVN D + +E + HRIGRTGR G G A + TD+D + +
Sbjct: 572 DVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 631
Query: 360 AIVDAE 365
+ A+
Sbjct: 632 NLEGAD 637
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 680 (244.4 bits), Expect = 3.2e-66, P = 3.2e-66
Identities = 149/361 (41%), Positives = 208/361 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIP---MIQHCVAQTPVGRGDGPLA 65
+ PT IQAQ P+AL RD++ A+TGSGKT + IP +++HC + +GP
Sbjct: 455 FPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR----NGPTV 510
Query: 66 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL 125
L+LAPTRELA QI+ E RS + GG Q EL G IVVATPGR
Sbjct: 511 LILAPTRELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKELERGADIVVATPGRLN 569
Query: 126 DHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 185
D L+ +VS ++LDEADRMLDMGFEPQIR+++ +P + QTL+++AT P E+ +
Sbjct: 570 DILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKI 629
Query: 186 AQEYLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A + L +PVQV +G+V AN + Q +E V + EK +R K
Sbjct: 630 ASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEK-ERRLEQILRSQERGSK------ 682
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
I+F K CD ++ + V AV +HG + Q +R+ L FR+G + +L+ATDVA+
Sbjct: 683 -VIIFCSTKRLCDHLARS-VGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAA 740
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363
RGLD+ + V+N D P VEDYVHRIGRTGR G+ G A +F+T++D + K +
Sbjct: 741 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEG 800
Query: 364 A 364
A
Sbjct: 801 A 801
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 679 (244.1 bits), Expect = 5.0e-66, P = 5.0e-66
Identities = 163/393 (41%), Positives = 227/393 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-- 58
+K I+ +Y +PT IQ QA+P+AL RDL+G AETGSGKTAAF +PM+ + P+
Sbjct: 710 LKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYE 769
Query: 59 -RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
DGP ALV+AP+RELA QI +E + S S +T VVGG N Q ELR GV IV
Sbjct: 770 TSQDGPYALVIAPSRELAIQIYEETNKFA-SYCSCRTVAVVGGRNAEAQAFELRRGVEIV 828
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK--------- 168
+ TPGR D L++ T L++ ++VILDEADRM+DMGFE + ++ +P
Sbjct: 829 IGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDAL 888
Query: 169 -----------HQ----TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE 213
H+ T +FSATMP +E L+++YL P + +G + ++ Q LE
Sbjct: 889 ALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLE 948
Query: 214 KVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 273
++E +K + + P P+ IVFV +K D +S+++ AVALH
Sbjct: 949 FLTEGKKKQKLQEIL--------EMYEP-PI-IVFVNQKKVADIISKSITKMKYKAVALH 998
Query: 274 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRT 333
GG+ Q RE L F+N +ILVATDVA RG+DV GV V+N D+PK +E Y HRIGRT
Sbjct: 999 GGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRT 1058
Query: 334 GRGGSMGQATSFYTDRDMLLVAQIKKAIVDAES 366
GR G G A SF T+ D L +K+ ++ + +
Sbjct: 1059 GRAGMKGLAISFITEHDSHLFYDLKQFLISSNN 1091
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 679 (244.1 bits), Expect = 5.0e-66, P = 5.0e-66
Identities = 163/393 (41%), Positives = 227/393 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-- 58
+K I+ +Y +PT IQ QA+P+AL RDL+G AETGSGKTAAF +PM+ + P+
Sbjct: 710 LKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYE 769
Query: 59 -RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
DGP ALV+AP+RELA QI +E + S S +T VVGG N Q ELR GV IV
Sbjct: 770 TSQDGPYALVIAPSRELAIQIYEETNKFA-SYCSCRTVAVVGGRNAEAQAFELRRGVEIV 828
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK--------- 168
+ TPGR D L++ T L++ ++VILDEADRM+DMGFE + ++ +P
Sbjct: 829 IGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDAL 888
Query: 169 -----------HQ----TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE 213
H+ T +FSATMP +E L+++YL P + +G + ++ Q LE
Sbjct: 889 ALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLE 948
Query: 214 KVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 273
++E +K + + P P+ IVFV +K D +S+++ AVALH
Sbjct: 949 FLTEGKKKQKLQEIL--------EMYEP-PI-IVFVNQKKVADIISKSITKMKYKAVALH 998
Query: 274 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRT 333
GG+ Q RE L F+N +ILVATDVA RG+DV GV V+N D+PK +E Y HRIGRT
Sbjct: 999 GGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRT 1058
Query: 334 GRGGSMGQATSFYTDRDMLLVAQIKKAIVDAES 366
GR G G A SF T+ D L +K+ ++ + +
Sbjct: 1059 GRAGMKGLAISFITEHDSHLFYDLKQFLISSNN 1091
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 147/353 (41%), Positives = 209/353 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQAQA+P L G D++G A+TG+GKTAA+ +P+IQ ++ TP GR LVL
Sbjct: 21 YQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLS-TPRGR---VRTLVL 76
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA QI + ++L + + + GG N+ +Q LR GV +VVA PGR LDH+
Sbjct: 77 APTRELACQIAESFRSLGQRA-RIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHI 135
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+G + V +I+DEADRM DMGF+P I+ +++ L HQTLLFSATMP E+ L E
Sbjct: 136 WRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTLE 195
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
T+PV +++G +P ++V + V ++K KS ++F
Sbjct: 196 TQTNPVTIQIG-TQAPASSVSHSVYPVKNHQKTP---LLIEILKTTETKS------VLIF 245
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K + +++ + G +L G +Q+ R + + FR G+ ILVATD+A+RGLD+
Sbjct: 246 ARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDI 305
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++HV+N D+P T EDY HRIGRTGR GQA S T RD +V I+K I
Sbjct: 306 DHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLI 358
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 152/362 (41%), Positives = 216/362 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK I+ + +PT IQ+QA P+ L G DL+G A+TG+GKT ++ +P H +Q PV RG
Sbjct: 236 MKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQ-PVSRG 294
Query: 61 --DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
+GP LVL PTRELA Q+ E S K+ + GG N Q ++ GV I++
Sbjct: 295 KRNGPGMLVLTPTRELALQVGAECSKYSYK--GLKSVCIYGGGNRKGQIQDIMKGVDIII 352
Query: 119 ATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
ATPGR L+ LQ N +L +++++LDEAD+MLD+GFE QI +++ ++ PD+ QT++ SA
Sbjct: 353 ATPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDR-QTIMTSA 410
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXX 235
T P I LA YL +P+ V VG + + + Q + +E EK
Sbjct: 411 TWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEK--------RSLFQEF 462
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
+S P IVFV RK D++S L +G+ +LHG R QSDRE AL DF+ G I
Sbjct: 463 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355
L+ATD+ASRGLDV V HV N + P+ +E+YVHR+GRTGR G MG++ + T D +
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 582
Query: 356 QI 357
++
Sbjct: 583 EL 584
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 152/362 (41%), Positives = 216/362 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK I+ + +PT IQ+QA P+ L G DL+G A+TG+GKT ++ +P H +Q PV RG
Sbjct: 227 MKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQ-PVSRG 285
Query: 61 --DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
+GP LVL PTRELA Q+ E S K+ + GG N Q ++ GV I++
Sbjct: 286 KRNGPGMLVLTPTRELALQVGAECSKYSYK--GLKSVCIYGGGNRKGQIQDIMKGVDIII 343
Query: 119 ATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
ATPGR L+ LQ N +L +++++LDEAD+MLD+GFE QI +++ ++ PD+ QT++ SA
Sbjct: 344 ATPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDR-QTIMTSA 401
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXX 235
T P I LA YL +P+ V VG + + + Q + +E EK
Sbjct: 402 TWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEK--------RSLFQEF 453
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
+S P IVFV RK D++S L +G+ +LHG R QSDRE AL DF+ G I
Sbjct: 454 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355
L+ATD+ASRGLDV V HV N + P+ +E+YVHR+GRTGR G MG++ + T D +
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 573
Query: 356 QI 357
++
Sbjct: 574 EL 575
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 150/374 (40%), Positives = 221/374 (59%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPV 57
K+I Y++ T +Q ++PV +GRDL+ CA+TGSGKTAAF +P++ V +
Sbjct: 180 KNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAF 239
Query: 58 GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+ P +++APTREL QI E + + ++ GGT ++ G +I+
Sbjct: 240 QKQQEPQCIIVAPTRELINQIFLEARKFVYGT-CIRPVVIYGGTQTGHSIRQIMQGCNIL 298
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLP--DKHQTLL 173
ATPGR LD +++G SL V +++LDEADRMLDMGF +++++ +P D+ QTL+
Sbjct: 299 CATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLM 358
Query: 174 FSATMPVEIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXX 232
FSAT P E++ LA E+L TD + + +G ++V Q + +V K D+
Sbjct: 359 FSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEILQSTG 418
Query: 233 XXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 292
T+VFV+ K + D ++ L E L + ++HG R Q +RE ALRDFR+G
Sbjct: 419 GER---------TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGK 469
Query: 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DM 351
ILVAT VASRGLD+ V HV+N DLP T+EDYVHRIGRTGR G+ G+A SF+ D+ D
Sbjct: 470 CQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDG 529
Query: 352 LLVAQIKKAIVDAE 365
LV + K + +A+
Sbjct: 530 HLVQSLLKVLSEAQ 543
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 371 (135.7 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
Identities = 77/164 (46%), Positives = 107/164 (65%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV------GRGDG 62
Y PT IQ A+P+A+ RDL+G A TGSGKTAAF +P++ + +A+ P + DG
Sbjct: 366 YKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCY-IAELPRIDEFEWRKNDG 424
Query: 63 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
P A+VLAPTRELAQQIE E K + L F +VGG + EQ LR G I++ATPG
Sbjct: 425 PYAIVLAPTRELAQQIEIEAKKFTEPL-GFNVVSIVGGHSFEEQAYSLRNGAEIIIATPG 483
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166
R +D +++ LS+ +VI+DEADRM+D+GFE + +++ LP
Sbjct: 484 RLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 527
Score = 331 (121.6 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 167 DKH-QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXX 225
D++ QT++++ATMP +E +A++YL P V +G V Q +E ++ +K R
Sbjct: 552 DRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDK--RKK 609
Query: 226 XXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285
+ P IVFV K CD ++ + G +V LHG + Q RE+AL
Sbjct: 610 RLGEILSSGDFR-----PPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAAL 664
Query: 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
RNGST++LVATD+A RG+DV V+ V+N ++ ++E Y HRIGRTGR G G A +F
Sbjct: 665 ASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITF 724
Query: 346 YTDRDMLLVAQIKKAIV 362
+ D ++ +K+ ++
Sbjct: 725 LGNEDADVMYDLKQMLI 741
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 150/373 (40%), Positives = 220/373 (58%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPV 57
K+I Y++ T +Q ++PV +GRDL+ CA+TGSGKTAAF +P++ V +
Sbjct: 180 KNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAF 239
Query: 58 GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+ P +++APTREL QI E + + ++ GGT ++ G +I+
Sbjct: 240 QKQQEPQCIIVAPTRELINQIFLEARKFVYGT-CIRPVVIYGGTQTGHSIRQIMQGCNIL 298
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLP--DKHQTLL 173
ATPGR LD +++G SL V +++LDEADRMLDMGF +++++ +P D+ QTL+
Sbjct: 299 CATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLM 358
Query: 174 FSATMPVEIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXX 232
FSAT P E++ LA E+L TD + + +G ++V Q + +V K D+
Sbjct: 359 FSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEILQSTG 418
Query: 233 XXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 292
T+VFV+ K + D ++ L E L + ++HG R Q +RE ALRDFR+G
Sbjct: 419 GER---------TMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGK 469
Query: 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DM 351
ILVAT VASRGLD+ V HV+N DLP T+EDYVHRIGRTGR G+ G+A SF+ D+ D
Sbjct: 470 CQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDG 529
Query: 352 LLVAQIKKAIVDA 364
LV + K + +A
Sbjct: 530 HLVQSLLKVLSEA 542
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 152/365 (41%), Positives = 213/365 (58%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 61
K I+ + T IQAQ +P+ L+ +D++G A+TG+GKTAAF IP+++ ++P
Sbjct: 16 KAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESP----- 70
Query: 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATP 121
A+V+APTRELA Q+ +E+ + + + + + GG +I Q L+ I+V TP
Sbjct: 71 NIQAIVIAPTRELAIQVSEELYKIGQDKRA-RVLPIYGGQDIGRQIRALKKNPHIIVGTP 129
Query: 122 GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 181
GR LDH+ + L V+ V+LDEAD ML+MGF I ++ N+P +HQTLLFSATMP
Sbjct: 130 GRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAP 189
Query: 182 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHP 241
I+ +A+ ++T+P VKV +N+ Q +V E +K D P
Sbjct: 190 IKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQS--------P 241
Query: 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301
L IVF K R DE++EAL G A +HG Q+ R ALR F+ G+ +LVATDV
Sbjct: 242 -ELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDV 300
Query: 302 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR--DML-LVAQIK 358
A+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A +F T R DML + Q
Sbjct: 301 AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTT 360
Query: 359 KAIVD 363
K +D
Sbjct: 361 KRKMD 365
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 152/361 (42%), Positives = 215/361 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GR 59
M++I+ + +PT IQ+QA P+ L G DL+G A+TG+GKT + +P H V Q + G+
Sbjct: 254 MENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQ 313
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
+ P LVL PTRELA Q+E E S ++ V GG N EQ EL+ GV I++A
Sbjct: 314 RNRPGMLVLTPTRELALQVEGE--CCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIA 371
Query: 120 TPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 177
TPGR L+ LQ N +L +++++LDEAD+MLDMGFEPQI +++ ++ PD+ QT++ SAT
Sbjct: 372 TPGR-LNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDR-QTVMTSAT 429
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
P + LAQ YL +P+ V VG + ++V Q + +E EK
Sbjct: 430 WPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFL-------- 481
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
+S IVFV RK D +S L+ + +LHG R Q DRE AL +F+ G IL
Sbjct: 482 QSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRIL 541
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
+ATD+ASRGLDV V HV N D P+ +E+YVHRIGRTGR G G + + T D + ++
Sbjct: 542 IATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASE 601
Query: 357 I 357
+
Sbjct: 602 L 602
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 152/364 (41%), Positives = 212/364 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K IE Y PT IQA A+P AL GRD+LG A+TG+GKTA+FT+PMI +A+ R
Sbjct: 14 LKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT-LLARGRA-RA 71
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
P +LVL PTRELA Q+ + ++ L K A+++GG + EQ + + GV +++AT
Sbjct: 72 RMPRSLVLCPTRELAAQVAENFDTYTKHLKLTK-ALLIGGVSFKEQDALIDRGVDVLIAT 130
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH ++G L+ V +++DEADRMLDMGF P I + P QTL FSATM
Sbjct: 131 PGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSATMAP 190
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQ--ILEKVSENEK-VDRXXXXXXXXXXXXXK 237
EIE + +L+ P +++V + ++ + + Q +L K S ++ +
Sbjct: 191 EIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGE 250
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
C I+F RKT D V+++L G A +HG +QS R L FR G +LV
Sbjct: 251 KCTN---AIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLV 307
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
A+DVA+RGLDV V+HV N D+P EDYVHRIGRTGR G G+A + RD + I
Sbjct: 308 ASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAI 367
Query: 358 KKAI 361
+K I
Sbjct: 368 EKLI 371
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 149/359 (41%), Positives = 216/359 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T PT IQ Q P+ALSGRD++G A+TGSGKT A+ +P I H Q + RGDGP+ VL
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPIVSVL 171
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE-LRGGVSIVVATPGRFLDH 127
L + F + G ++ QR E L V I +ATPGR +D
Sbjct: 172 PFFSTLFSVYRGGTDFKFKCSSLFWVCFL--GQSLKGQRLEWLSQCVEICIATPGR-IDF 228
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALA 186
L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT P E+ LA
Sbjct: 229 LESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSATWPKEVRQLA 287
Query: 187 QEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLT 245
+++L D Q+ VG + S N++QI++ E+EK D ++ T
Sbjct: 288 EDFLRDYTQINVGNLELSANHNILQIVDVCMESEK-DHKLIQLMEEIMAEKEN-----KT 341
Query: 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305
I+FVE K RCD+++ + +G A+ +HG ++Q +R+ L +FR+G IL+ATDVASRG
Sbjct: 342 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRG 401
Query: 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
LDV V V+N D P + EDYVHRIGRT R + G A +F+T ++ ++ K + +A
Sbjct: 402 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA 460
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 157/380 (41%), Positives = 226/380 (59%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGR 59
++I+ Y RPT +Q ++P GRDL+ CA+TGSGKTAAF +P++ + P V R
Sbjct: 244 ENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHR 303
Query: 60 G---DG------PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSE 109
G P ALVL+PTREL+ QI E + + +A++ GG N +Q +
Sbjct: 304 SVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTP-ITSALLYGGRENYKDQIHK 362
Query: 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPD 167
LR G I++ATPGR +D + QG + +++LDEADRMLDMGFEPQIR++++ +P
Sbjct: 363 LRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPS 422
Query: 168 KHQ--TLLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRX 224
K + T +FSAT P EI+ LAQ++L + V + VG+V S + N++Q + V E+EK R
Sbjct: 423 KEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEK--RS 480
Query: 225 XXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 284
LT+VFVE K +++ L + V +HG Q +RE
Sbjct: 481 YLMDLLDATGDSS------LTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKH 534
Query: 285 LRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 344
L FR G+ ILVAT VA+RGLD+ V HV+N DLP V++YVHRIGRTGR G++G ATS
Sbjct: 535 LDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATS 594
Query: 345 FYTDRDMLLVAQIKKAIVDA 364
F+ D++ + ++ IV+A
Sbjct: 595 FFNDKNRNIARELMDLIVEA 614
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 150/361 (41%), Positives = 216/361 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGR 59
M +I + +PT IQ+QA P+ L G DL+G A+TG+GKT A+ +P H +Q P +
Sbjct: 252 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK 311
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
GP LVLAPTRELA Q+E E L + FK+ + GG + Q + + GV IV+A
Sbjct: 312 RGGPGMLVLAPTRELALQVEAE--CLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVIA 369
Query: 120 TPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 177
TPGR L+ LQ N +L +++ + +EADRMLDMGFEPQI +++ ++ PD+ QT++ SAT
Sbjct: 370 TPGR-LNDLQMNNFINLKSITY-LANEADRMLDMGFEPQIMKILIDVRPDR-QTVMMSAT 426
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXXX 236
P + LA+ YL +P+ V VG + N + Q + ++E EK
Sbjct: 427 WPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEK--------KAFMENFI 478
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
S P I+FV +K+ D+++ L +G+ +LHG R Q DRE AL DF+ G IL
Sbjct: 479 DSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRIL 538
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VATD+ASRGLDV + HV N D P+ +E+YVHR+GRTGR G G+A + T +D ++
Sbjct: 539 VATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASE 598
Query: 357 I 357
+
Sbjct: 599 L 599
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 148/360 (41%), Positives = 216/360 (60%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGR 59
M +I + +PT IQ+QA P+ L G DL+G A+TG+GKT A+ +P H +Q P +
Sbjct: 65 MANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDK 124
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
GP LVLAPTRELA Q+E E L + FK+ + GG + Q + + GV IV+A
Sbjct: 125 RGGPGMLVLAPTRELALQVEAE--CLKYTYKGFKSICIYGGGDRKAQINVVTKGVDIVIA 182
Query: 120 TPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 177
TPGR L+ LQ N +L +++++LDEADRMLDMGFEPQI +++ ++ PD+ QT++ SAT
Sbjct: 183 TPGR-LNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDR-QTVMMSAT 240
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
P + LA+ YL +P+ V VG + + V+ L+ + + D+
Sbjct: 241 WPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVV--LKYL----QFDKDIFTWKYMQVNAQS 294
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
C + +VFV+ D+++ L +G+ +LHG R Q DRE AL DF+ G ILV
Sbjct: 295 FCTD--VVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILV 352
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATD+ASRGLDV + HV N D P+ +E+YVHR+GRTGR G G+A + T +D +++
Sbjct: 353 ATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASEL 412
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 152/360 (42%), Positives = 209/360 (58%)
Query: 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA--QTPVGRGDGP 63
F +T PT IQ Q+ P+ L G DL+G A TGSGKT AF +P + ++ + P G P
Sbjct: 127 FQGFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRP-SYGATP 185
Query: 64 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
L LV+APTRELAQQIE+ K R S + GG +Q LR GV IV+ TPGR
Sbjct: 186 LVLVMAPTRELAQQIEEVCKTSIRGT-SIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGR 244
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
D L++ + LS V +++LDEADRMLDMGF PQI ++ +P + QTL+FSAT P E++
Sbjct: 245 LNDLLRKHH--LSSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVK 302
Query: 184 ALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
LA ++L DP+++ VG + + NV Q + V+ ++ D + P
Sbjct: 303 LLASKFLKDPIKITVGSQELTGSINVTQHI--VNIDDLSDLQSDDLIYDEINKILTADPT 360
Query: 243 PLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301
IVF K +CD+ L + + ++ LH G++Q RES L+ FR+ IL+ATDV
Sbjct: 361 NTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDV 420
Query: 302 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD-----RDMLLVAQ 356
A+RGLD+ V V N LP +EDYVHRIGRTGR G G A S+ T RD++ + Q
Sbjct: 421 AARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNLRDLVKILQ 480
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 143/365 (39%), Positives = 216/365 (59%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVL 68
PT IQ Q +P L+GRDL+G A TGSGKT F +P+I + Q P R +GP L++
Sbjct: 200 PTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLII 259
Query: 69 APTRELAQQIEKEVKALSRSLDS-----FKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
P+RELA+Q + ++ S+ L + ++ + +GG ++E + GV IVVATPGR
Sbjct: 260 CPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGR 319
Query: 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183
+D L + +L ++ +DEADRM+DMGFE +R + + QTLLFSATMP +I+
Sbjct: 320 LMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQ 379
Query: 184 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
A+ L PV + VG+ + + NV Q +E V + KV K+ P
Sbjct: 380 NFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV-------VYLLDCLQKTAPP-- 430
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ +R G ++LVATDVAS
Sbjct: 431 -VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVAS 489
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY---TDRDMLLVAQIKKA 360
+GLD V HV+N D+P +E+YVHRIGRTGR + G AT+ T++ +LL +K
Sbjct: 490 KGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLL--DLKHL 547
Query: 361 IVDAE 365
+++ +
Sbjct: 548 LIEGK 552
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 159/402 (39%), Positives = 223/402 (55%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K ++ Y P+SIQ A+PV L +DL+G AETGSGKTAAF IP+I P+
Sbjct: 261 LKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTES 320
Query: 61 D---GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+ GP A+VLAPTRELAQQI+ E + L F+ VVGG EQ ++ G IV
Sbjct: 321 NMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQGAHIV 379
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD---------- 167
VATPGR LD L++ LS+ ++V++DEADRMLDMGFE + +++ +LP
Sbjct: 380 VATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSI 439
Query: 168 ---------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN 218
+ QT++FSAT+P + LA+ YL +PV + +G + V Q +E +S++
Sbjct: 440 LATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDD 499
Query: 219 EKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQ 278
K R P I+FV K + +++ L A G HAV LHG ++Q
Sbjct: 500 SKKWRRVEEILESNRFS-------PPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQ 552
Query: 279 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 338
RE A+ RN + +ILVATD+A RG+D+ V+ V+N ++ K++EDY HRIGRTGR G
Sbjct: 553 EQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGK 612
Query: 339 MGQATSF--------YTDRDMLLVAQIKKAIVDAESGNAVAF 372
G A +F Y D +LL K I D + AF
Sbjct: 613 SGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAAF 654
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 151/367 (41%), Positives = 220/367 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M+ I + +PT IQ+Q+ P+ L G DL+G A+TG+GKT ++ +P H +Q PV R
Sbjct: 213 MQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQ-PVSRK 271
Query: 61 --DGPLALVLAPTRELAQQIEKEV-KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+GP LVL PTRELA Q+E E K L + L K+ + GG N Q ++ GV I+
Sbjct: 272 QRNGPGMLVLTPTRELALQVEAECSKYLYKGL---KSVCIYGGGNRKGQIQDVTKGVDII 328
Query: 118 VATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFS 175
+ATPGR L+ LQ N +L +++++LDEAD+MLD+GFE QI +++ ++ PD+ QT++ +
Sbjct: 329 IATPGR-LNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDR-QTVMTT 386
Query: 176 ATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXX 234
A+ P LAQ YL P+ V VG + T N + Q + +E EK
Sbjct: 387 ASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEK--------RSLVKE 438
Query: 235 XXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 294
+S P IVFV RK D++S L +G+ +LHG R QSDR+ AL DFR G
Sbjct: 439 FLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVK 498
Query: 295 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV 354
IL+ATD+A+RGLDV V HV N + P+ +E+YVHR+GRTGR G +G++ + T D +
Sbjct: 499 ILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIA 558
Query: 355 AQIKKAI 361
++ K +
Sbjct: 559 DELIKIL 565
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 143/379 (37%), Positives = 223/379 (58%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG- 60
+++E YTR T IQ +P+ G+D+L CA+TGSGKTAAF +P++ + + + G
Sbjct: 311 RNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGA 370
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSI 116
+G P ++L PTRELA QI E + S +S+ K V GG N+ +S++ G +I
Sbjct: 371 EGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKP--VYGGINVGYNKSQIMKGCTI 428
Query: 117 VVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVM--QNLP--DKHQT 171
+V T GR + G L + +++LDEADRM+D MGF P+I +++ +N+P DK QT
Sbjct: 429 IVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQT 488
Query: 172 LLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXX 230
++FSAT P ++ A++ L D + + K+ + VIQ E KVD+
Sbjct: 489 MMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGI 548
Query: 231 X--XXXXXKSCHPF-PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287
K+ F TIVFV ++ D ++ + A + A+ +HG R Q +R +AL+
Sbjct: 549 DIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKL 608
Query: 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
FR+G+ +L+AT V RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF +
Sbjct: 609 FRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS 668
Query: 348 -DRDMLLVAQIKKAIVDAE 365
D+ ++ Q+ + + DAE
Sbjct: 669 LADDVQILPQLVRTLADAE 687
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 143/379 (37%), Positives = 223/379 (58%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG- 60
+++E YTR T IQ +P+ G+D+L CA+TGSGKTAAF +P++ + + + G
Sbjct: 311 RNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGA 370
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSI 116
+G P ++L PTRELA QI E + S +S+ K V GG N+ +S++ G +I
Sbjct: 371 EGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKP--VYGGINVGYNKSQIMKGCTI 428
Query: 117 VVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVM--QNLP--DKHQT 171
+V T GR + G L + +++LDEADRM+D MGF P+I +++ +N+P DK QT
Sbjct: 429 IVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQT 488
Query: 172 LLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXX 230
++FSAT P ++ A++ L D + + K+ + VIQ E KVD+
Sbjct: 489 MMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGI 548
Query: 231 X--XXXXXKSCHPF-PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287
K+ F TIVFV ++ D ++ + A + A+ +HG R Q +R +AL+
Sbjct: 549 DIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKL 608
Query: 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
FR+G+ +L+AT V RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF +
Sbjct: 609 FRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFIS 668
Query: 348 -DRDMLLVAQIKKAIVDAE 365
D+ ++ Q+ + + DAE
Sbjct: 669 LADDVQILPQLVRTLADAE 687
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 146/352 (41%), Positives = 199/352 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT+IQA +P ++G D++G A+TG+GKTAAF IPM+ + V P ALVL
Sbjct: 33 YESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKV-----PQALVL 87
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ + L + GG++ A Q + LR G +VV TPGR +DHL
Sbjct: 88 VPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHL 147
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++ LSRV F++LDEAD ML MGF + ++ P+ Q LFSATMP I L+ +
Sbjct: 148 ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAK 207
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
YL DP +V ++ N+ Q +V+ K+D PF IVF
Sbjct: 208 YLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVL---------EVEPFEAMIVF 256
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
V K +E++E L A G A A+ G Q+ RE + R+G +ILVATDVA+RGLDV
Sbjct: 257 VRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDV 316
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
++HV+N D+P E YVHRIGRTGR G G A F + R++ L+ I+KA
Sbjct: 317 ERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKA 368
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 150/362 (41%), Positives = 212/362 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M++IE + +PT IQ+QA P+ L G DL+G A+TG+GKT ++ +P H +Q + R
Sbjct: 253 MRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRA 312
Query: 61 -DGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
+GP LVL PTRELA Q++ E S R L K+ + GG + Q +L G I++
Sbjct: 313 RNGPGMLVLTPTRELALQVDAECSEYSYRGL---KSVCIYGGGDRDGQIKDLSKGADIII 369
Query: 119 ATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSA 176
ATPGR D LQ N L +++++LDEAD+MLDMGFEPQI +++ ++ PD+ QT++ SA
Sbjct: 370 ATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDR-QTVMTSA 427
Query: 177 TMPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRXXXXXXXXXXXX 235
T P + LAQ YL +P+ V VG + + V Q + +E+EK
Sbjct: 428 TWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEK--------RSHIQAF 479
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
S P I+FV RK D +S L + +LHG R QSDRE AL+ F+ G I
Sbjct: 480 IDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355
L+ATD+ASRGLDV V HV N D P+ +E+YVHR+GRTGR G G + + T D +
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAG 599
Query: 356 QI 357
++
Sbjct: 600 EL 601
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 146/374 (39%), Positives = 219/374 (58%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPV 57
K++ Y +PT +Q +P+ +GRDL+ CA+TGSGKTAAF +P++Q VA +
Sbjct: 290 KNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKF 349
Query: 58 GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
P A+++APTREL QI E + + + +V GG N E+ G +++
Sbjct: 350 SEIQEPEAIIVAPTRELINQIYLEARKFAYGT-CVRPVVVYGGINTGYTIREVLKGCNVL 408
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--LPDKH--QTLL 173
ATPGR D + +G LS+V +++LDEADRMLDMGFEP++R+++ + +P K QTL+
Sbjct: 409 CATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLM 468
Query: 174 FSATMPVEIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXX 232
FSAT P +I+ +A ++L D + + VG V ++V Q + +V + K D+
Sbjct: 469 FSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQYSKRDQLLELLRATG 528
Query: 233 XXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 292
T+VFVE K D ++ L E + ++HG R Q +RE AL DFR G
Sbjct: 529 NER---------TMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGH 579
Query: 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDM 351
+LVAT VA+RGLD+ V HVVN D+P ++++YVHRIGRTGR G+ G+A SF+ + D
Sbjct: 580 CPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDT 639
Query: 352 LLVAQIKKAIVDAE 365
L + K + A+
Sbjct: 640 PLARSLVKVLSGAQ 653
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 145/367 (39%), Positives = 215/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 281 YTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 340
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT ++ G +I+ ATPGR
Sbjct: 341 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRL 399
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TLLFSAT P
Sbjct: 400 MDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPE 459
Query: 181 EIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA ++L + V VG+V +V Q + +V + K ++
Sbjct: 460 EIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDER---- 515
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 516 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 570
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY-TDRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ TD D L +
Sbjct: 571 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLV 630
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 631 KVLSDAQ 637
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 150/359 (41%), Positives = 210/359 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGR 59
M +I + + +P+ IQ+Q P+ LSG+D +G ++TGSGKT AF +P + H AQ +
Sbjct: 96 MGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEK 155
Query: 60 GD-----GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGV 114
D P LVL+PTRELAQQIE EVK S + +K+ + GG + EQ RGGV
Sbjct: 156 NDEEQKPSPFVLVLSPTRELAQQIEGEVKKYS--YNGYKSVCLYGGGSRPEQVEACRGGV 213
Query: 115 SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLL 173
IV+ATPGR D G SL+ V++V+LDEADRMLDMGFE IR ++ + PD+ L
Sbjct: 214 EIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDR-LVAL 272
Query: 174 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRXXXXXXXXX 232
SAT P + L +Y + V G + + +V Q E V + + R
Sbjct: 273 TSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLT 332
Query: 233 XXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 292
++ + + I+FV+ K D +S +G+++ LHGGR+QSDRE +L R+G
Sbjct: 333 AAHGQN---YKM-IIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGE 388
Query: 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF--YTDR 349
ILVATD+ASRG+DV + HV+N D P +E+YVHR+GRTGR G G+A SF + DR
Sbjct: 389 VQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDR 447
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 145/367 (39%), Positives = 217/367 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 282 YTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 341
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT ++ G +I+ ATPGR
Sbjct: 342 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRL 400
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TLLFSAT P
Sbjct: 401 MDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPE 460
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 461 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKLVEILRNIGDER---- 516
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 517 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 571
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY-TDRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ T+ D L +
Sbjct: 572 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLV 631
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 632 KVLSDAQ 638
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 141/360 (39%), Positives = 214/360 (59%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 61
K + Y P+ IQAQA+P L+G+D++ A+TG+GKTA FT+P+++ +A+ +
Sbjct: 14 KAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLAKGHKAKSG 72
Query: 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATP 121
ALVL PTRELA Q+ + V+ + L ++A+V GG I Q ++LR GV ++VATP
Sbjct: 73 QTRALVLTPTRELAAQVGESVETYGKYLP-LRSAVVFGGVPINPQINKLRHGVDVLVATP 131
Query: 122 GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 181
GR LD +QQ +++ ++LDEADRMLDMGF I++++ LP K Q L+FSAT E
Sbjct: 132 GRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDE 191
Query: 182 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHP 241
I LA+ + PV++ V ++ V Q + V + +K K
Sbjct: 192 IRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQK--------SALLIQLIKQ-EN 242
Query: 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301
+ +VF K + ++++L+ + A A+HG ++Q R AL DF++G +LVATD+
Sbjct: 243 WQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDI 302
Query: 302 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
A+RGLD+ + VVN DLP EDYVHRIGRTGR G+ GQA S + ++ L+ I++ I
Sbjct: 303 AARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLI 362
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 143/349 (40%), Positives = 205/349 (58%)
Query: 5 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 64
E ++ +PT IQA A P LSG+D++G AETGSGKT AF +P I H + + G
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQ---KKRGIQ 184
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
LV++PTRELA QI + L+ + + V GG EQR +L+ +VVATPGR
Sbjct: 185 VLVISPTRELASQIYDNLIVLTDKV-GMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRL 242
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMPVEIE 183
LD LQ+G+ LS+V++++LDEADRML+ GFE I+ +++ K QTL+F+AT P E+
Sbjct: 243 LDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVR 302
Query: 184 ALAQEYLTDPVQVKVGKVSSPTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHP 241
LA ++ +P++V +G TAN + QI+E V K + K+
Sbjct: 303 ELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKN--- 359
Query: 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301
++F K V L G + A+HG +Q R AL +F++G +N+L+ATDV
Sbjct: 360 -EKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDV 418
Query: 302 ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
A+RGLD+ V V+NL P TVEDYVHRIGRTGR G G A + +T+++
Sbjct: 419 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 142/367 (38%), Positives = 217/367 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 288 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE 347
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 348 CIIVAPTRELVNQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 406
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L ++ +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 407 MDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 466
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 467 EIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDER---- 522
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 523 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVAT 577
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 578 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV 637
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 638 KVLTDAQ 644
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 142/367 (38%), Positives = 217/367 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 308 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE 367
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 368 CIIVAPTRELVNQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 426
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L ++ +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 427 MDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 486
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 487 EIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDER---- 542
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 543 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVAT 597
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 598 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV 657
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 658 KVLTDAQ 664
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 144/366 (39%), Positives = 220/366 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
Y + T +Q ++P+ ++GRDL+ CA+TGSGKTAAF +P++ + + + + P
Sbjct: 294 YVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPE 353
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
A+++APTREL QI + + S + +V GG ++ G +I+ ATPGR
Sbjct: 354 AIIIAPTRELINQIYLDARKFSYGT-CVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRL 412
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--LP--DKHQTLLFSATMPV 180
LD + + LS++ +++LDEADRMLDMGF P+I ++M +P +K QTL+FSAT P
Sbjct: 413 LDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPE 472
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI LA YL ++ + V VG V ++V Q + ++ EN K+++ KS
Sbjct: 473 EIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLEIL--------KSS 524
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T++FV K + D ++ L E + ++HG R Q RESAL DFR G ++V T
Sbjct: 525 EK-ERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCT 583
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ-IK 358
VA+RGLD+ V HV+N D+PK V++YVHRIGRTGR G+ G+ATSF+ +D ++A+ +
Sbjct: 584 AVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHVIARPLV 643
Query: 359 KAIVDA 364
K + DA
Sbjct: 644 KILTDA 649
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 141/344 (40%), Positives = 200/344 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K IE Y P+ IQ QA+P L+G+D++ A+TG+GKTA FT+P+++ +A+ P R
Sbjct: 13 LKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVRA 71
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+ AL+L PTRELA QI+ V R L K+A+V GG I Q + G I+VAT
Sbjct: 72 NQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +D Q ++ ++LDEADRMLDMGF I ++++ LP+K Q LLFSAT
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFST 190
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
EI LA+ + +PV++ V +S V Q + +K D
Sbjct: 191 EIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGN-------- 242
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ +VF+ K + ++ L +GL A A+HG ++Q R AL DF+ G ILVATD
Sbjct: 243 -WQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 344
+A+RG+D+ + VVN +LPK EDYVHRIGRTGR G +G+A S
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAIS 345
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 141/344 (40%), Positives = 200/344 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K IE Y P+ IQ QA+P L+G+D++ A+TG+GKTA FT+P+++ +A+ P R
Sbjct: 13 LKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVRA 71
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+ AL+L PTRELA QI+ V R L K+A+V GG I Q + G I+VAT
Sbjct: 72 NQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +D Q ++ ++LDEADRMLDMGF I ++++ LP+K Q LLFSAT
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFST 190
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
EI LA+ + +PV++ V +S V Q + +K D
Sbjct: 191 EIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGN-------- 242
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ +VF+ K + ++ L +GL A A+HG ++Q R AL DF+ G ILVATD
Sbjct: 243 -WQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 344
+A+RG+D+ + VVN +LPK EDYVHRIGRTGR G +G+A S
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAIS 345
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 142/367 (38%), Positives = 217/367 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 309 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEPE 368
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 369 CIIVAPTRELVNQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 427
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L ++ +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 428 MDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 487
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 488 EIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDER---- 543
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 544 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 598
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 599 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV 658
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 659 KVLTDAQ 665
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 145/375 (38%), Positives = 217/375 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PV 57
+K ++ PT IQ Q +P LSGRD++G A TGSGKT FT+P+I C+ Q P
Sbjct: 49 LKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPF 108
Query: 58 GRGDGPLALVLAPTRELAQQ-----IEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELR 111
+ +GP L++ P+ +A+ IE K L + A+ +GG ++ EQ ++
Sbjct: 109 CKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCIGGMSVKEQMEVVK 168
Query: 112 GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQT 171
+ATPGR +D L + SL ++ LDEADRM+DMGFE IR + + QT
Sbjct: 169 ------LATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQT 222
Query: 172 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXX 231
LLFSATMP +I+ A+ L P+ + VG+ + + +VIQ +E V E K+
Sbjct: 223 LLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKM-------VYL 275
Query: 232 XXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG 291
K+ P P+ ++F E+K D + E L+ +G+ AVA+HGG++Q +R A+ F+ G
Sbjct: 276 LECLQKT--PPPV-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEG 332
Query: 292 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-D 350
++LVATDVAS+GLD + HVVN D+P+ +E+YVHRIGRTGR G G AT+F D
Sbjct: 333 KKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCD 392
Query: 351 MLLVAQIKKAIVDAE 365
++ +K +V+A+
Sbjct: 393 ESVLMDLKALLVEAK 407
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 525 (189.9 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 113/303 (37%), Positives = 178/303 (58%)
Query: 59 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
R L+L PTREL Q+ E+K+ ++L K+ V GG Q + L+ G I+V
Sbjct: 424 RASDTYGLILLPTRELCLQVLDEIKSFEKNLP-IKSVAVYGGVPKYYQINNLKKGADIIV 482
Query: 119 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178
ATPGR LD L+ GN +L + +V++DEADR+LDMGFE Q+R++M + Q L +AT
Sbjct: 483 ATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATW 542
Query: 179 PVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXK 237
P ++ LA ++ + DPV++++GK + TAN I + V + +D K
Sbjct: 543 PEQVRKLAYDFCSYDPVKIQIGK-NELTANK-NIEQNVIISSSIDMKKKLLDWL-----K 595
Query: 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297
+ ++F + K CD + + L +A+++HG + Q +R+ L +++ NILV
Sbjct: 596 ENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILV 655
Query: 298 ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
ATDVASRGLD+ ++ V+N D+P T+EDY+HRIGRTGR G G++ F++ D + ++
Sbjct: 656 ATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFS-YDYYMPQKL 714
Query: 358 KKA 360
K A
Sbjct: 715 KFA 717
Score = 135 (52.6 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQH 50
++++ PT+IQ P+ALSG+DL+G AETGSGKT AF +P H
Sbjct: 305 NKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMH 348
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 143/367 (38%), Positives = 217/367 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 309 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE 368
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 369 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQLGYSIRQIVQGCNILCATPGRL 427
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 428 MDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 487
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 488 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRSIGDER---- 543
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 544 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 598
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 599 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLAQPLV 658
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 659 KVLSDAQ 665
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 150/364 (41%), Positives = 212/364 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--- 57
M +I+ + +PT IQ+QA P+ L G DL+G A+TG+GKT ++ +P H +Q V
Sbjct: 253 MINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSL 312
Query: 58 GRG-DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSI 116
R +GP LVL PTRELA Q+E E S K+ V GG + Q +L GV I
Sbjct: 313 QRARNGPGMLVLTPTRELALQVEAECSKYSYK--GLKSVCVYGGGDRDGQIKDLLKGVDI 370
Query: 117 VVATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLF 174
++ATPGR L+ LQ N L +S+++LDEAD+MLDMGFEPQI +++ ++ PD+ QT++
Sbjct: 371 IIATPGR-LNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDR-QTVMT 428
Query: 175 SATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXX 233
SAT P + LAQ YL +P+ V VG + + + Q + +E+EK
Sbjct: 429 SATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEK--------RSHIQ 480
Query: 234 XXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 293
+S P I+FV RK D +S L + +LHG R Q DRE AL++F+ G
Sbjct: 481 TFIESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKV 540
Query: 294 NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 353
IL+ATD+ASRGLDV V HV N D P+ +E+YVHR+GRTGR G G + + T D +
Sbjct: 541 RILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKI 600
Query: 354 VAQI 357
++
Sbjct: 601 AGEL 604
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 142/367 (38%), Positives = 216/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 306 YTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPE 365
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 366 CIIVAPTRELVNQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 424
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L ++ +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 425 MDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 484
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q +V + K ++
Sbjct: 485 EIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNIGDER---- 540
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 541 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVAT 595
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 596 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLV 655
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 656 KVLTDAQ 662
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 148/368 (40%), Positives = 210/368 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VGRGD---GPL 64
+ +P+ IQ+ P L GRDL+G A+TGSGKT AF IP I H + + +G G P
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
LVL+PTRELA QI ++ K+ V GG++ Q S +R GV IV+ TPGR
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPC-GLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRL 252
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 184
D ++ LS VSFV+LDEADRMLDMGFE +R ++ N Q ++FSAT P+++
Sbjct: 253 RDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHK 312
Query: 185 LAQEYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
LAQE++ +P++V +G V + +V+QI+E + E + D+ K+
Sbjct: 313 LAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERAR-DQRLIALLEKYHKSQKN---- 367
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
+VF K + + L G AV++HG + QS+R +L F+ GS +LVATDVA
Sbjct: 368 -RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA 426
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362
+RGLD+ V V+N P T EDYVHRIGRTGR G G A +F+T + L ++ +
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVL- 485
Query: 363 DAESGNAV 370
E+G V
Sbjct: 486 -REAGQVV 492
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/352 (41%), Positives = 206/352 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
++ +E + T IQA+ +P AL G+D++G A+TG+GKTAAF +P++ +G
Sbjct: 14 LQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
+V+APTRELA Q+ +E+ + + + + GG +I Q L+ I+V T
Sbjct: 74 -----IVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LDH+ + L V V+LDEAD ML+MGF I ++ ++P+ HQTLLFSATMP
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
I +A+ ++T+P ++VK +V+ P N+ Q +V E +K D +S
Sbjct: 188 PIRRIAERFMTEPQHIKVKAKEVTMP--NIQQFYLEVQEKKKFD------VLTRLLDIQS 239
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
P L IVF K R DE+SEAL G A +HG Q+ R S LR F+ GS +LVA
Sbjct: 240 --P-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVA 296
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
TDVA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A F T R+
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 145/365 (39%), Positives = 202/365 (55%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K + YT PT IQ +A+P L G D+ G A+TG+GKTAAF +PMIQ T R
Sbjct: 16 LKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRL--STGRARA 73
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
P L+L PTRELA Q+ + + + L A+++GG + EQ + L+ GV +++AT
Sbjct: 74 RMPRCLILCPTRELAAQVAENFEKYGKYL-KLTMALLIGGVSFKEQETLLQRGVDVLIAT 132
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +D +G + V +I+DEADRMLDMGF P I ++ LP QTLLFSAT P
Sbjct: 133 PGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATFPT 192
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+I+ LA+ + DP +++V + + + Q + K+ N+ R K+
Sbjct: 193 DIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKN-- 250
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
IVF RK D V+ +L G A +HG QS R L+ FR+G +LVA+D
Sbjct: 251 ----GIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASD 306
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM----LLVAQ 356
VA+RGLD+ V HV N P EDYVHRIGRTGR G G++ + T D +V
Sbjct: 307 VAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKM 366
Query: 357 IKKAI 361
IKK +
Sbjct: 367 IKKDV 371
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 142/367 (38%), Positives = 215/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 310 YTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 369
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 370 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 428
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 429 MDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 488
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 489 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDER---- 544
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 545 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 599
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 600 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLV 659
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 660 KVLSDAQ 666
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 142/367 (38%), Positives = 215/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 310 YTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 369
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 370 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRL 428
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TL+FSAT P
Sbjct: 429 MDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 488
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V + K ++
Sbjct: 489 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDER---- 544
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 545 -----TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 599
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLVAQIK 358
VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D L +
Sbjct: 600 SVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLV 659
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 660 KVLSDAQ 666
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 145/351 (41%), Positives = 205/351 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
MK IE + T IQA+ +P++L +D++G A+TG+GKTAAF IP+++ + V +
Sbjct: 14 MKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE----KVNV-KN 68
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
ALV+APTRELA Q+ +E+ + ++ + + GG +I Q L+ ++V T
Sbjct: 69 SAVQALVVAPTRELAIQVSEELYKIG-AVKRVRVLPIYGGQDIERQIRALKKHPHVIVGT 127
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +DH+ +G L V V+LDEAD ML+MGF I ++ ++P + QTLLFSATMP
Sbjct: 128 PGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPD 187
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
I +A+ ++ +P VKV N+ Q +V E +K D
Sbjct: 188 PIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQA-------- 239
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
P L IVF K R DE++EAL G A +HG +Q+ R S LR F+ G+ ILVATD
Sbjct: 240 P-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351
VA+RGLD+ GV HV N D+P+ E YVHRIGRTGR G G A +F T R++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 144/352 (40%), Positives = 210/352 (59%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP--LALVLA 69
PT IQ QA+P L G+D+L A+TG+GKTAAF +P+IQ + Q + ALVL
Sbjct: 29 PTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLV 88
Query: 70 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 129
PTRELAQQ+ ++A ++ + K V GGT++ Q + LRGGV I++ATPGR LDH
Sbjct: 89 PTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAH 147
Query: 130 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189
+ L +V ++LDEADRMLDMGF P ++ V++ L QTL FSAT +I+A+A
Sbjct: 148 VKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRI 207
Query: 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFV 249
+ DP++V+V S+ TA +Q + V VD+ K+ + +VF
Sbjct: 208 MRDPIEVQVTP-SNSTAETVQ--QMVYP---VDKKRKRELLSYLIGSKN---WQQVLVFT 258
Query: 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309
+ + D ++E L +G+ AV+++G ++Q R+ AL DF+ G L+ATDVA+RGLD+
Sbjct: 259 KTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIA 318
Query: 310 GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ VVN D+P EDYVHRIGRTGR G G A S + + + I++ +
Sbjct: 319 QLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLL 370
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 148/363 (40%), Positives = 210/363 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ--TPVG 58
+K + Y P+ IQAQA+P +SGRD++ A+TG+GKTA FT+P++Q + V
Sbjct: 18 LKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVS 77
Query: 59 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
+ AL+L PTRELA QI + ++ + L+ + +V GG I Q + LR GV ++V
Sbjct: 78 -SNNVRALILTPTRELAAQISESIEVYGKYLN-LHSMVVFGGVKINPQIARLRQGVDVLV 135
Query: 119 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178
ATPGR LD Q S++ ILDEADRMLDMGF I+++M LP Q LLFSAT
Sbjct: 136 ATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATF 195
Query: 179 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
EI ALA+ + +P+++ V +S V Q L V + K K
Sbjct: 196 SPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKP--------AVLTHLIKE 247
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
+ + +VF + K +++++ L AEGL A A+HG ++Q R AL F++GS ILVA
Sbjct: 248 -NNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVA 306
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TD+A+RG+D+ + VVN DLP EDYVHRIGRT R G+ GQA S ++ L+ I+
Sbjct: 307 TDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIE 366
Query: 359 KAI 361
I
Sbjct: 367 HVI 369
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 144/352 (40%), Positives = 210/352 (59%)
Query: 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP--LALVLA 69
PT IQ QA+P L G+D+L A+TG+GKTAAF +P+IQ + Q + ALVL
Sbjct: 29 PTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLV 88
Query: 70 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 129
PTRELAQQ+ ++A ++ + K V GGT++ Q + LRGGV I++ATPGR LDH
Sbjct: 89 PTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAH 147
Query: 130 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189
+ L +V ++LDEADRMLDMGF P ++ V++ L QTL FSAT +I+A+A
Sbjct: 148 VKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKIKAVAYRI 207
Query: 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFV 249
+ DP++V+V S+ TA +Q + V VD+ K+ + +VF
Sbjct: 208 MRDPIEVQVTP-SNSTAETVQ--QMVYP---VDKKRKRELLSYLIGSKN---WQQVLVFT 258
Query: 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309
+ + D ++E L +G+ AV+++G ++Q R+ AL DF+ G L+ATDVA+RGLD+
Sbjct: 259 KTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIA 318
Query: 310 GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ VVN D+P EDYVHRIGRTGR G G A S + + + I++ +
Sbjct: 319 QLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLL 370
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 145/354 (40%), Positives = 208/354 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRDLL A+TGSGKTAAF +P+I + Q+ P ALVL
Sbjct: 211 YEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSKA-----PSALVL 265
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE++ K L L +TA++VGG Q LR V +++ATPGR LD +
Sbjct: 266 TPTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIM 325
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + L + V++DEAD ML MGF+ Q+ +V++N+P QT+L SAT+P IE LA
Sbjct: 326 KQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASR 385
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L DPV+V G+ + P +V QI+ V E K + K P P+ +VF
Sbjct: 386 LLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILNDK-----KLFKP-PV-LVF 438
Query: 249 VERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +SEA+ GL + ++H ++Q +R++ L G +++V+T V RGLD
Sbjct: 439 VDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLD 498
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V VVN D+P ++++YVH++GR GR G G A +F + L I K +
Sbjct: 499 LISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRV 552
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 143/361 (39%), Positives = 216/361 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M+ I EY +PT IQA A+P ALSGRD+LG A+TGSGKTAA+ P I H + Q + G
Sbjct: 277 MEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAG 336
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRG-GVSIVVA 119
+GP+A+++ PTRELA Q+ +E K + + + GG + EQ +EL+ G +VV
Sbjct: 337 EGPVAVIVVPTRELAIQVFQEAKKFCK-VYNINPICAYGGGSKWEQSNELQNEGAEMVVC 395
Query: 120 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 178
TPGR +D ++ G T+ R +F++ DEADRM DMGFE Q++ + ++ PD+ Q L+FSAT
Sbjct: 396 TPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR-QCLMFSATF 454
Query: 179 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
++E LA++ L DPV++ G+V A++ Q + V +N+ V
Sbjct: 455 KQKVERLARDALVDPVRIVQGEVGEANADIEQKVF-VMQNQDVKLHWLIRNLVEFASLGK 513
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298
++FV +K ++V++ L + V LHG Q++R L FR S ILVA
Sbjct: 514 ------VLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS-QILVA 566
Query: 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
TDVA+RGLD+ + V+N D+ + ++ +VHRIGRTGR G G A + T++D+ +V +
Sbjct: 567 TDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLV 626
Query: 359 K 359
K
Sbjct: 627 K 627
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 140/353 (39%), Positives = 201/353 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y + T IQ QA+P G+D+L A+TG+GKTAAF +P++Q V L+L
Sbjct: 21 YQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVLIL 80
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ + V+A S+ L+ F + GG + Q +L+ G I+VATPGR L+HL
Sbjct: 81 TPTRELAAQVAENVEAYSKYLN-FSVLTIYGGVKVETQAQKLKRGADIIVATPGRLLEHL 139
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
N SLS V F++LDEADRMLDMGF I++++Q + K Q LLFSAT ++ LA E
Sbjct: 140 TACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSATFSSAVKKLANE 199
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ P + K ++ V Q++ V + K + K+ + +VF
Sbjct: 200 MMIKPQVISADKQNTTADTVSQVVYPVEQRRKRE------LLSELIGKKN---WQQVLVF 250
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+ D + + L +G+ + +HG + Q R ALR+F +G +LVAT+VA+RGLD+
Sbjct: 251 TATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDI 310
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ +VVN DLP EDYVHRIGRTGR G G A SF + + +A I+K I
Sbjct: 311 PSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLI 363
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 141/354 (39%), Positives = 212/354 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRD+L A+TGSGKTAAF +P+I + ++ P AL+L
Sbjct: 223 YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT-----PSALIL 277
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE++ K L L KT ++VGG + Q L+ V +++ATPGR LD +
Sbjct: 278 TPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDII 337
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + L V V++DEAD ML MGF+ Q+ ++++N+P+ QT+L SAT+P IE LA +
Sbjct: 338 KQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQ 397
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L +PV++ G+ + P ANV QI+ V + K + K P P+ +VF
Sbjct: 398 LLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDK-----KLFKP-PV-LVF 450
Query: 249 VERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +SEA+ GL ++++H ++Q +R++ L+ G ++V+T V RGLD
Sbjct: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V VVN D+P ++++YVH+IGR GR G G A +F + L I K +
Sbjct: 511 LISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRV 564
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 143/356 (40%), Positives = 206/356 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +P+ IQA+ +P L+GRD+LG A+TGSGKTAAF++P++Q+ + P LVL
Sbjct: 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKA-----PQILVL 80
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA Q+ + + S+ + + GG Q LR G IVV TPGR LDHL
Sbjct: 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++G LS++S ++LDEAD ML MGF + +M +P+ HQT LFSATMP I + +
Sbjct: 141 KRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRR 200
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKV---SENEKVDRXXXXXXXXXXXXXKSCHPFPLT 245
++ +P +V++ + ++ Q V +NE + R F
Sbjct: 201 FMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL------------EAEDFDAA 248
Query: 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305
I+FV K EV+EAL G ++ AL+G NQ+ RE L ++G +IL+ATDVA+RG
Sbjct: 249 IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308
Query: 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
LDV ++ VVN D+P E YVHRIGRTGR G G+A F +R+ L+ I++ +
Sbjct: 309 LDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 143/361 (39%), Positives = 213/361 (59%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 61
++++ Y PT IQ Q +PV L GRD+L A+TGSGKTAAF +P+I ++Q+
Sbjct: 217 RNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQSK----- 271
Query: 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATP 121
P LVL PTRELA QIE++ K L L +TA++VGG QR LR + +++ATP
Sbjct: 272 SPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATP 331
Query: 122 GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 181
GR LD ++Q + L + V++DEAD ML MGF+ Q+ +V++ LP QT+L SAT+P
Sbjct: 332 GRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPAS 391
Query: 182 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHP 241
+E LA + L DPV + G+ + P +V QI+ V E K + K P
Sbjct: 392 VEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILNDK-----KLFKP 446
Query: 242 FPLTIVFVERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
P+ +VFV+ K D +SEA+ GL + ++H + Q +R++ L+ G +++V+T
Sbjct: 447 -PV-LVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTG 504
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
V RGLD++GV VVN D+P ++++YVH+IGR GR G G A +F + L I K
Sbjct: 505 VLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDIAKR 564
Query: 361 I 361
+
Sbjct: 565 V 565
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 141/374 (37%), Positives = 223/374 (59%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K+ ++ +PT +Q+ P+ALSG D+LG ++TGSGKT +F +P I+H +AQ
Sbjct: 151 IKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYY 210
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
GP LV+APTRELA QI +E + R L + + A + GG Q+ +L IVV T
Sbjct: 211 PGPSVLVVAPTRELANQINQEAEQYLR-LVNIEIATIYGGAPRRSQQLQLSRRPKIVVGT 269
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMP 179
PGR +D ++ G+ SL +SF+++DEADR+++MGFE QI + ++ PD+ Q L +SAT P
Sbjct: 270 PGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDR-QVLYWSATWP 328
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTAN--VIQILEKV-SENEKVDRXXXXXXXXXXXXX 236
++ + A++++ P+++++G S TAN + Q + V ++ +KVD
Sbjct: 329 KKVSSFAEKHIRTPIRLQIGS-SQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADE 387
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHGGRNQSDRESALRDFRNGSTN 294
K+ T++F K D + + + G + LHG +Q+ RE ++DF+N +
Sbjct: 388 KA-----QTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLD 442
Query: 295 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR---DM 351
I+VATDVASRGLD+ G++HV+N LP E YVHRIGRTGR G++G + S ++ DM
Sbjct: 443 IVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDM 502
Query: 352 LLVAQIKKAIVDAE 365
LV + + +E
Sbjct: 503 ELVGDLTNLLQRSE 516
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 139/368 (37%), Positives = 220/368 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG----DGPL 64
Y + T IQ ++P+ ++GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 306 YVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPE 365
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
A+++APTREL QI + + S + ++ GGT + ++ G +I+ ATPGR
Sbjct: 366 AIIVAPTRELINQIYLDARKFSYGT-CVRPVVIYGGTQMFHSLKQISEGCNILCATPGRL 424
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--LPDKH--QTLLFSATMPV 180
LD +++ L+++ +++LDEADRMLDMGF I ++++ +P K QTL+FSAT P
Sbjct: 425 LDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKEERQTLMFSATFPS 484
Query: 181 EIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
I++LA+E L D + V VG+V ++V Q++ +V E K D+
Sbjct: 485 SIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLMEILQEIGSER---- 540
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
T+VFV+ K + D ++ L E + + ++HG R Q +RE+ALRDFR G ++VAT
Sbjct: 541 -----TMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVAT 595
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR---DMLLVAQ 356
VA+RGLD+ V++V+N D+P +++YVHRIGRTGR G+ G+A SF+ R + +
Sbjct: 596 SVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRGDDEQRIARS 655
Query: 357 IKKAIVDA 364
+ K + DA
Sbjct: 656 LVKVLSDA 663
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 148/374 (39%), Positives = 212/374 (56%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TP-VG 58
++ IE YT+PT +Q +A+P L GRDL+ A+TG+GKT F +P+++ P
Sbjct: 13 VRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKS 72
Query: 59 RGDGPL---ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVS 115
+ GP LVL PTRELA Q+ + K +R L F +A + GG + Q + GV
Sbjct: 73 QRHGPRQPRVLVLTPTRELAAQVHESFKLYARDL-KFVSACIFGGVGMNPQVQAMSRGVD 131
Query: 116 IVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175
++VA PGR LD QG+ LS V ++LDEADRMLDMGF +++V+ LP K Q LLFS
Sbjct: 132 VLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191
Query: 176 ATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXX 235
AT +I +LA + L +P +++V + P V E++ ++V R
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEV---TPPNTTV----ERIE--QRVFRLAANHKRSLLAH 242
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
+ + +VF K + ++E L GL AVA+HG ++Q+ R AL DF+ G I
Sbjct: 243 LITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRI 302
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLV 354
+VATD+A+RGLD+ + HVVN +LP EDYVHRIGRTGR G G+A S D + LL
Sbjct: 303 MVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLK 362
Query: 355 A---QIKKAIVDAE 365
+ K+ I D +
Sbjct: 363 SIERMTKQKIADGD 376
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 138/352 (39%), Positives = 204/352 (57%)
Query: 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69
T T IQ +A+PV LSG+D++G A+TG+GKT AF +P+++ ++ AL++A
Sbjct: 26 TEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES-----SDVQALIVA 80
Query: 70 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 129
PTRELA QI E+K + + + GG ++A+Q +L+G IVVATPGR LDH++
Sbjct: 81 PTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIR 140
Query: 130 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189
+ LS +S ++LDEAD+ML GF I +++ P QT+LFSAT+P +I+ LA+ Y
Sbjct: 141 RETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRY 200
Query: 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFV 249
+ +P ++V S V I ++V E DR + PF L ++F
Sbjct: 201 MDEPQMIQV---QSEEVTVDTIEQRVIET--TDRAKPDALRFVMDRDQ---PF-LAVIFC 251
Query: 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309
K R ++ + L G + LHG Q+ RE ++ FR L+ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 310 GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
GV HV N D+P+ VE Y+HRIGRTGR G G A +F +D + +I+K +
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 138/352 (39%), Positives = 204/352 (57%)
Query: 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69
T T IQ +A+PV LSG+D++G A+TG+GKT AF +P+++ ++ AL++A
Sbjct: 26 TEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES-----SDVQALIVA 80
Query: 70 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 129
PTRELA QI E+K + + + GG ++A+Q +L+G IVVATPGR LDH++
Sbjct: 81 PTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIR 140
Query: 130 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189
+ LS +S ++LDEAD+ML GF I +++ P QT+LFSAT+P +I+ LA+ Y
Sbjct: 141 RETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRY 200
Query: 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFV 249
+ +P ++V S V I ++V E DR + PF L ++F
Sbjct: 201 MDEPQMIQV---QSEEVTVDTIEQRVIET--TDRAKPDALRFVMDRDQ---PF-LAVIFC 251
Query: 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309
K R ++ + L G + LHG Q+ RE ++ FR L+ATDVA+RGLDV
Sbjct: 252 RTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVD 311
Query: 310 GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
GV HV N D+P+ VE Y+HRIGRTGR G G A +F +D + +I+K +
Sbjct: 312 GVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTL 363
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 131/352 (37%), Positives = 205/352 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PT IQ+ ++ ++G+D+LG A+TG+GKT AF +P++ +QT P LVL
Sbjct: 26 YEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQTT------PQILVL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA Q+ + + ++ + +F + GG ++ +Q + L+ G ++V TPGR +DH+
Sbjct: 80 APTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVMDHM 139
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++G L + ++LDEAD ML MGF I ++++ P + Q LFSATMP +I+ +A +
Sbjct: 140 RRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPEQIKRVANK 199
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+L + + + + ++ Q +VS++ K++ I+F
Sbjct: 200 HLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGI---------IIF 250
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
V + C E++E L A G + LHG NQ RE A+ +NG +IL+ATDVA+RGLDV
Sbjct: 251 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDV 310
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
+ HVVN D+P E YVHRIGRTGR G G A F T R+M ++ I++A
Sbjct: 311 ERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERA 362
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 144/367 (39%), Positives = 215/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 293 YTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 352
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT ++ G +I+ ATPGR
Sbjct: 353 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRL 411
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TLLFSAT P
Sbjct: 412 MDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPE 471
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V K +
Sbjct: 472 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDER---- 527
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
P+ VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 528 ---PM--VFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 582
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY-TDRDMLLVAQIK 358
VA+RGLD+ V HV+N +LP T+++YVHRIGRTGR G+ G+A SF+ T+ D L +
Sbjct: 583 SVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLV 642
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 643 KVLSDAQ 649
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 144/367 (39%), Positives = 215/367 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC----VAQTPVGRGDGPL 64
YT+ T +Q ++P+ L+GRDL+ CA+TGSGKTAAF +P++ H + + P
Sbjct: 293 YTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPE 352
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
+++APTREL QI E + S + ++ GGT ++ G +I+ ATPGR
Sbjct: 353 CIIVAPTRELINQIYLEARKFSFGT-CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRL 411
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLFSATMPV 180
+D + + L +V +++LDEADRMLDMGF P++++++ +P K Q TLLFSAT P
Sbjct: 412 MDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPE 471
Query: 181 EIEALAQEYL-TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
EI+ LA E+L ++ + V VG+V +V Q + +V K +
Sbjct: 472 EIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNIGDER---- 527
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
P+ VFVE K + D ++ L E + ++HG R Q +RE AL DFR G +LVAT
Sbjct: 528 ---PM--VFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVAT 582
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY-TDRDMLLVAQIK 358
VA+RGLD+ V HV+N +LP T+++YVHRIGRTGR G+ G+A SF+ T+ D L +
Sbjct: 583 SVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLV 642
Query: 359 KAIVDAE 365
K + DA+
Sbjct: 643 KVLSDAQ 649
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 151/374 (40%), Positives = 209/374 (55%)
Query: 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD-- 61
IE YT+PT +Q +A+P L GRDL+ A+TG+GKT F +P+++ P G D
Sbjct: 16 IEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLF---PNGHPDKS 72
Query: 62 ---GPL---ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVS 115
GP LVL PTRELA Q+ K +R L F +A + GG + Q + GV
Sbjct: 73 QRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDL-KFVSACIFGGVGMNPQVQAMARGVD 131
Query: 116 IVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175
++VA PGR LD QG+ LS V ++LDEADRMLDMGF +++V+ LP K Q LLFS
Sbjct: 132 VLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191
Query: 176 ATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXX 235
AT +I LA + L +P +++V + P V E++ ++V R
Sbjct: 192 ATFSKDITDLAGKLLHNPERIEV---TPPNTTV----ERIE--QRVFRLPASHKRALLAH 242
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
+ + +VF K + ++E L GL AVA+HG ++Q+ R AL DF+ G I
Sbjct: 243 LITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRI 302
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRDMLLV 354
LVATD+A+RGLD+ + HVVN +LP EDYVHRIGRTGR G G+A S D + LL
Sbjct: 303 LVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLK 362
Query: 355 A---QIKKAIVDAE 365
+ K+ I D +
Sbjct: 363 SIERMTKQKIADGD 376
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 139/354 (39%), Positives = 212/354 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRD+L A+TGSGKTAAF +P+I + ++ P AL+L
Sbjct: 224 YEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKT-----PSALIL 278
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE + K L L KT ++VGG + Q LR V +++ATPGR LD +
Sbjct: 279 TPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDII 338
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + L + V++DEAD ML MGF+ Q+ ++++++P+ QT+L SAT+P IE LA +
Sbjct: 339 KQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQ 398
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L +PV++ G+ + P ++V QI+ V E K + K P P+ +VF
Sbjct: 399 LLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDK-----KLFKP-PV-LVF 451
Query: 249 VERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +SEA+ GL +V++H ++Q++R++ L+ G ++V+T V RGLD
Sbjct: 452 VDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLD 511
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V VVN D+P ++++YVH++GR GR G G A +F + L I K +
Sbjct: 512 LISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRV 565
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/361 (37%), Positives = 211/361 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K I Y PT IQ Q++P+ L+ D++ A+TG+GKTAAF +P++Q ++ P
Sbjct: 17 LKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCK-- 74
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
ALVL PTRELAQQ+ K + D I GG + +Q SEL+ GV I++AT
Sbjct: 75 PELRALVLTPTRELAQQVHKSFCHYGQFTD-VTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LD L+ + SLS + ++ DEADRMLDMGF+ +I ++ Q LP QTLLFSAT
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+I +++ L +P V++ + + +V Q++ V + K +
Sbjct: 194 DIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRN-------- 245
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ +VF K D++++ + +G+ ++A+HG ++Q RE AL +F+ G L+ATD
Sbjct: 246 -WKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATD 304
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
VA+RG+D+ G++HV+N +LP EDYVHRIGRT R G+ G A S + + L+ I++
Sbjct: 305 VAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEEL 364
Query: 361 I 361
+
Sbjct: 365 L 365
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/361 (37%), Positives = 211/361 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K I Y PT IQ Q++P+ L+ D++ A+TG+GKTAAF +P++Q ++ P
Sbjct: 17 LKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPCK-- 74
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
ALVL PTRELAQQ+ K + D I GG + +Q SEL+ GV I++AT
Sbjct: 75 PELRALVLTPTRELAQQVHKSFCHYGQFTD-VTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR LD L+ + SLS + ++ DEADRMLDMGF+ +I ++ Q LP QTLLFSAT
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+I +++ L +P V++ + + +V Q++ V + K +
Sbjct: 194 DIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSRN-------- 245
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ +VF K D++++ + +G+ ++A+HG ++Q RE AL +F+ G L+ATD
Sbjct: 246 -WKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATD 304
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360
VA+RG+D+ G++HV+N +LP EDYVHRIGRT R G+ G A S + + L+ I++
Sbjct: 305 VAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEEL 364
Query: 361 I 361
+
Sbjct: 365 L 365
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 142/342 (41%), Positives = 195/342 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
YT PT IQ QA+P+ + GRD++G A+TG+GKT AF P++ G LVL
Sbjct: 27 YTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPVRGTRVLVL 86
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA QI L+ + +V GG I Q +L G I+VATPGR +D +
Sbjct: 87 APTRELAGQIATSFGTYGAGLN-LRVVMVCGGAKIGGQIRQLERGAHILVATPGRLIDLM 145
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q SL +V +ILDEAD+MLD+GF +R + +N+P K QTL FSATMP +E+LA
Sbjct: 146 EQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAVESLAAT 205
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+L +P +V V + P +I ++V E+ ++ +S IVF
Sbjct: 206 FLRNPAEVSV---APPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSA------IVF 256
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K D V + L + +VA+HG ++QS RE AL F+ G ILVATD+A+RG+ V
Sbjct: 257 TRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHV 316
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
+ HV+N DLP E +VHRIGRT R G+ G A SF + RD
Sbjct: 317 DALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCS-RD 357
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 129/351 (36%), Positives = 212/351 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL-ALV 67
Y +PT IQ +A+P L+ +D++ A+TG+GKTAAF +P++Q +A + ALV
Sbjct: 21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALV 80
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L PTRELA Q+++ ++ D + I GG +I Q++ G+ +++ATPGR LDH
Sbjct: 81 LVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDH 139
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187
L+QG +L++++ ++ DEADRMLDMGF +I+ V++ +P + QTLLFSAT+ I + ++
Sbjct: 140 LRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSK 199
Query: 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
L DP +++V K ++ A + Q + + + K + K+ + ++
Sbjct: 200 NLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTE------FVSHLVRSKN---WQQVLI 250
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K D+++ L G+ + HG +Q RE L++F+ G +LVATDVA+RGLD
Sbjct: 251 FSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLD 310
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
+ + +V+N +LP EDY+HRIGRTGR GS G A + ++ D LL+ +++
Sbjct: 311 IAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 129/351 (36%), Positives = 212/351 (60%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL-ALV 67
Y +PT IQ +A+P L+ +D++ A+TG+GKTAAF +P++Q +A + ALV
Sbjct: 21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALV 80
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
L PTRELA Q+++ ++ D + I GG +I Q++ G+ +++ATPGR LDH
Sbjct: 81 LVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDH 139
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187
L+QG +L++++ ++ DEADRMLDMGF +I+ V++ +P + QTLLFSAT+ I + ++
Sbjct: 140 LRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSK 199
Query: 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
L DP +++V K ++ A + Q + + + K + K+ + ++
Sbjct: 200 NLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTE------FVSHLVRSKN---WQQVLI 250
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K D+++ L G+ + HG +Q RE L++F+ G +LVATDVA+RGLD
Sbjct: 251 FSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLD 310
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358
+ + +V+N +LP EDY+HRIGRTGR GS G A + ++ D LL+ +++
Sbjct: 311 IAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 637 (229.3 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 130/345 (37%), Positives = 207/345 (60%)
Query: 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 63
+E + + +IQ Q +P + GRD++ AETGSGKT ++ P+I+H + Q P+ DGP
Sbjct: 738 LEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGP 797
Query: 64 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
++++L PTREL+ Q++ E K ++++ + V GG+NIA Q L+ GV I+V TPGR
Sbjct: 798 ISIILTPTRELSIQVKNEAKIYCKAVN-IEILAVYGGSNIARQLKVLKKGVEILVGTPGR 856
Query: 124 FLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
+D L N T+L+RVSFV+LDEADR+LD+GFE QI +++N QT + SAT P
Sbjct: 857 IIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPN 916
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
I+ +A++ L P+++ VG+ N+ Q +E + E++KV R
Sbjct: 917 YIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIK------- 969
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ L ++FV ++ D + L + + LHGG++Q+DR+ L F+ +L+AT
Sbjct: 970 -YGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATS 1028
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
V +RG+D+ + V+N P +EDY+HRIGRTGR ++G A +F
Sbjct: 1029 VMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTF 1073
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 637 (229.3 bits), Expect = 4.4e-61, P = 4.4e-61
Identities = 130/345 (37%), Positives = 207/345 (60%)
Query: 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 63
+E + + +IQ Q +P + GRD++ AETGSGKT ++ P+I+H + Q P+ DGP
Sbjct: 738 LEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGP 797
Query: 64 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGR 123
++++L PTREL+ Q++ E K ++++ + V GG+NIA Q L+ GV I+V TPGR
Sbjct: 798 ISIILTPTRELSIQVKNEAKIYCKAVN-IEILAVYGGSNIARQLKVLKKGVEILVGTPGR 856
Query: 124 FLDHLQQGN---TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
+D L N T+L+RVSFV+LDEADR+LD+GFE QI +++N QT + SAT P
Sbjct: 857 IIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPN 916
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
I+ +A++ L P+++ VG+ N+ Q +E + E++KV R
Sbjct: 917 YIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIK------- 969
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
+ L ++FV ++ D + L + + LHGG++Q+DR+ L F+ +L+AT
Sbjct: 970 -YGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATS 1028
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
V +RG+D+ + V+N P +EDY+HRIGRTGR ++G A +F
Sbjct: 1029 VMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTF 1073
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 137/378 (36%), Positives = 217/378 (57%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-G 60
K++ Y++ T IQ A+P+ G D++ CA+TGSGKTAAF +P++ + + G
Sbjct: 354 KNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAG 413
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSI 116
+G P ++L PTRELA QI E + + +++ K V GG + + ++ G +I
Sbjct: 414 EGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKP--VYGGLAVGYNKGQIEKGATI 471
Query: 117 VVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQ--NLPDKH--QT 171
+V T GR ++G L + F +LDEADRM+D MGF I ++ ++P K QT
Sbjct: 472 IVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQT 531
Query: 172 LLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXX 230
L+FSAT P ++ A+ +L + V + + K+ + V+Q E+ +EK D+
Sbjct: 532 LMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGI 591
Query: 231 X--XXXXXKSCHPFPL-TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287
KS + T+VFV ++ D ++ L + + A+ +HG R Q +R ALR
Sbjct: 592 DIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQ 651
Query: 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
FRNGS +L+AT VA RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF +
Sbjct: 652 FRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS 711
Query: 348 DRDMLLVAQIKKAIVDAE 365
+ D L++++ + DA+
Sbjct: 712 E-DCSLLSELVGVLADAQ 728
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 137/378 (36%), Positives = 217/378 (57%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-G 60
K++ Y++ T IQ A+P+ G D++ CA+TGSGKTAAF +P++ + + G
Sbjct: 354 KNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAG 413
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSI 116
+G P ++L PTRELA QI E + + +++ K V GG + + ++ G +I
Sbjct: 414 EGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKP--VYGGLAVGYNKGQIEKGATI 471
Query: 117 VVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQ--NLPDKH--QT 171
+V T GR ++G L + F +LDEADRM+D MGF I ++ ++P K QT
Sbjct: 472 IVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQT 531
Query: 172 LLFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXX 230
L+FSAT P ++ A+ +L + V + + K+ + V+Q E+ +EK D+
Sbjct: 532 LMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSEKKDKLLELLGI 591
Query: 231 X--XXXXXKSCHPFPL-TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287
KS + T+VFV ++ D ++ L + + A+ +HG R Q +R ALR
Sbjct: 592 DIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQ 651
Query: 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347
FRNGS +L+AT VA RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF +
Sbjct: 652 FRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFIS 711
Query: 348 DRDMLLVAQIKKAIVDAE 365
+ D L++++ + DA+
Sbjct: 712 E-DCSLLSELVGVLADAQ 728
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 133/354 (37%), Positives = 207/354 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT +Q Q +PV L+GRD++ A+TGSGKT AF +P++ + Q+ P L+L
Sbjct: 190 YEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSESASPSCPACLIL 248
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE++ K L R L + +TA++VGG + Q L+ + IV+ TPGR L+ L
Sbjct: 249 TPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEIL 308
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q L V V++DEAD ML MGF+ Q+ ++++ +P+ HQTLL SAT+P + LA+
Sbjct: 309 KQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQLAER 368
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
DPV + +G+ + P ANV QI+ V E K + K P P+ +VF
Sbjct: 369 LTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDE-----KLYQP-PV-VVF 421
Query: 249 VERKTRCDEVSEALV-AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D + EA+ L+ VA+H + Q +R ++ G +++++T + RGLD
Sbjct: 422 VDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGRGLD 481
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V V+N D+P +++YVH+IGR GR G G A +F + + L ++ K +
Sbjct: 482 LVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKRV 535
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 129/308 (41%), Positives = 192/308 (62%)
Query: 59 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
RGDGP+ LVLAPTRELAQQ+++ R+ K+ + GG Q +L GV I +
Sbjct: 85 RGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICI 143
Query: 119 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 177
ATPGR +D L+ G T+L R ++++LDEADRMLDMGFEPQIR+++ + PD+ QTL++SAT
Sbjct: 144 ATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR-QTLMWSAT 202
Query: 178 MPVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXX 236
P E+ LA+++L D + + +G + S N++QI++ + EK ++
Sbjct: 203 WPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKE 262
Query: 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
TIVFVE K RCDE++ + +G A+ +HG ++Q +R+ L +F++G IL
Sbjct: 263 NK------TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPIL 316
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
+ATDVASRGLDV V V+N D P + EDY+HRIGRT R G A +F+T ++ V+
Sbjct: 317 IATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 376
Query: 357 IKKAIVDA 364
+ + +A
Sbjct: 377 LISVLREA 384
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 143/354 (40%), Positives = 203/354 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+ PT IQ +A+P+ L G +L+G A TG+GKTAA+ +P++Q + RG L++
Sbjct: 22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR------IQRGKKAQVLIV 75
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ EV L + L + V GG I Q LR GV ++V TPGR LDH+
Sbjct: 76 TPTRELALQVADEVAKLGKYL-KVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHI 134
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ + + VILDEAD MLDMGF I ++ L ++ QTLLFSAT+P I+ + ++
Sbjct: 135 GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKK 194
Query: 189 YLTDPVQVK-VGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
+L VK VG+ + A + Q+ ++ E EK++ S P IV
Sbjct: 195 FLGGYKTVKLVGREKTVPA-IRQVYYELPETEKIE--------GLVSILNSELPIQ-AIV 244
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K R DEV E L G A LHG +Q +R ++ F+ G T +LVATDVA+RGLD
Sbjct: 245 FCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLD 304
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ V+HV+N D+P+ E Y+HRIGRTGR G G+A + R+ L+ I++AI
Sbjct: 305 IPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAI 358
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 143/354 (40%), Positives = 203/354 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+ PT IQ +A+P+ L G +L+G A TG+GKTAA+ +P++Q + RG L++
Sbjct: 22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR------IQRGKKAQVLIV 75
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ EV L + L + V GG I Q LR GV ++V TPGR LDH+
Sbjct: 76 TPTRELALQVADEVAKLGKYL-KVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHI 134
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ + + VILDEAD MLDMGF I ++ L ++ QTLLFSAT+P I+ + ++
Sbjct: 135 GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKK 194
Query: 189 YLTDPVQVK-VGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
+L VK VG+ + A + Q+ ++ E EK++ S P IV
Sbjct: 195 FLGGYKTVKLVGREKTVPA-IRQVYYELPETEKIE--------GLVSILNSELPIQ-AIV 244
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K R DEV E L G A LHG +Q +R ++ F+ G T +LVATDVA+RGLD
Sbjct: 245 FCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLD 304
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ V+HV+N D+P+ E Y+HRIGRTGR G G+A + R+ L+ I++AI
Sbjct: 305 IPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAI 358
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 142/350 (40%), Positives = 203/350 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y T IQA ++P+ L+G+D++ A+TGSGKTAAF I ++ A + R ALVL
Sbjct: 24 YAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALS--FRVQ---ALVL 78
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ KE++ L+R D+ K + GG Q L G +V+ TPGR LDHL
Sbjct: 79 CPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVIGTPGRLLDHL 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++G+ LS + ++LDEADRMLDMGF+ I ++ P K QTLLFSAT P I A++
Sbjct: 139 RRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDSIAAMSAG 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLT-IV 247
+PV+V V +V A + Q+ +V ++++ H P + ++
Sbjct: 199 VQREPVEVSVDEVHGEGA-IEQVFYEVDSGQRIEAVERILG----------HYRPESALI 247
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K C EV+ AL G A+A+HG +Q +R+ L F N S ++LVATDVA+RGLD
Sbjct: 248 FCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLD 307
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
+ ++ V+N +L + E + HRIGRTGR G G A S T R+ L+A I
Sbjct: 308 IKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAI 357
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/357 (38%), Positives = 202/357 (56%)
Query: 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG----RGDGP 63
EY +PT IQA+A+P +GRDL+ A TGSGKTA F +PM+Q G +G+
Sbjct: 27 EYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFV 86
Query: 64 LALVLAPTRELAQQIEKEVKALSRSLDS-FKTAIVVGGTNIAEQRSELRGGVSIVVATPG 122
LVL PTRELA+Q+ +K+ + + KT V GG ++ Q LRGGV I+VATPG
Sbjct: 87 TGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPG 146
Query: 123 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEI 182
R LD + L +V ++LDEADRML +GF ++ ++ P K QTLLFSAT P ++
Sbjct: 147 RLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATFPEQV 206
Query: 183 EALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
L QE L +P+++++ + T ++Q + V++ EK +
Sbjct: 207 TTLTQELLNNPIEIQLQSADAST--LVQRVFTVNKGEKT---------AVLAHLIQQEQW 255
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
++FV K C+ ++E L G+ A HG + QS+R L F+ G +L+ATD+A
Sbjct: 256 RQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIA 315
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
+RGLD+ + V+N +LP++ DY+HRIGR+GR G +G A S D + I+K
Sbjct: 316 ARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIEK 372
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 145/349 (41%), Positives = 200/349 (57%)
Query: 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVLAPTRE 73
IQ + A+ GRD++G A TG+GKT AF IP+I + GRG PL LVLAPTRE
Sbjct: 130 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRE 189
Query: 74 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT 133
LA+Q+EKE + + SLD T + GGT I +Q +L GV + V TPGR +D +++G
Sbjct: 190 LARQVEKEFRESAPSLD---TICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGAL 246
Query: 134 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP 193
+LS V FV+LDEAD+ML +GF + +++ LP+K Q+++FSATMP I +L ++YL +P
Sbjct: 247 NLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNP 306
Query: 194 VQVK-VGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERK 252
+ V VG A+ I ++++ K C IVF + K
Sbjct: 307 LTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGK-C------IVFTQTK 359
Query: 253 TRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312
D +S AL A ALHG +QS RE L FR+G NILVATDVA+RGLDV V
Sbjct: 360 RDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVD 418
Query: 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+++ +LP E +VHR GRTGR G G A Y+ V I++ +
Sbjct: 419 LIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 143/377 (37%), Positives = 215/377 (57%)
Query: 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGR-- 59
DI YT+ T +Q +P+ L+GRDL+ CA+TGSGKTAAF +P++ H + R
Sbjct: 280 DITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGVTASRFK 339
Query: 60 -GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 118
P +++APTREL QI E + S + ++ GGT + ++ G +I+
Sbjct: 340 DQQEPECIIVAPTRELINQIFLEARKFSFGT-CVRPVVIYGGTQLGHSIRQIMQGCNILC 398
Query: 119 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ--NLPDKHQ--TLLF 174
ATPGR +D + + L ++ +++LDEADRMLDMGF P++++++ +P K Q TL+F
Sbjct: 399 ATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKEQRQTLMF 458
Query: 175 SATMPV-EIEALAQEYLTDPV--QVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXX 231
SAT P + A E+L + V VG+V ++V Q + +V + K ++
Sbjct: 459 SATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKREKLVEILRNI 518
Query: 232 XXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG 291
T+VFVE K + D ++ L E + ++HG R Q +RE AL DFR G
Sbjct: 519 GEER---------TMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCG 569
Query: 292 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT-DRD 350
+LVAT VA+RGLD+ V HV+N DLP T+++YVHRIGRTGR G+ G+A SF+ + D
Sbjct: 570 KCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPD 629
Query: 351 MLLVAQIKKAIVDAESG 367
L + K + DA+ G
Sbjct: 630 SHLAQPLVKVLSDAQQG 646
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 145/356 (40%), Positives = 203/356 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALV 67
Y + T IQAQ++PV L G DL+ A+TGSGKTAAF I ++ P+ R G ALV
Sbjct: 26 YAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLN------PINPRYFGCQALV 79
Query: 68 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH 127
+ PTRELA Q+ KEV+ L+R+ D+ K + GG + Q + L G I+V TPGR H
Sbjct: 80 ICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPGRIQQH 139
Query: 128 LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187
L++G+ L ++ ++LDEADRMLDMGF I ++++ P + QTLLFSAT PV I+ LA
Sbjct: 140 LRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQLAS 199
Query: 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
+++ DP VK T QI ++ E +R SC F T
Sbjct: 200 KFMRDPQTVKAEAFHDDT----QIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFT-- 253
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
K + E + L A+G+ AV LHG Q DR+ L F N ST++LVATDVA+RGLD
Sbjct: 254 ----KQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLD 309
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM---LLVAQIKKA 360
+ + V+N++L + E ++HR+GRTGR G G A S + + Q++KA
Sbjct: 310 IDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKA 365
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 623 (224.4 bits), Expect = 2.7e-60, P = 2.7e-60
Identities = 135/377 (35%), Positives = 215/377 (57%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-G 60
K++ YT+ T IQ +P+ G D++ CA+TGSGKTAAF +P++ + + + G
Sbjct: 565 KNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAG 624
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+G P ++L PTREL QI E + + + V GG + + ++ G +I+
Sbjct: 625 EGGCYPRCIILTPTRELTDQIYNEGRKFAYQT-MMEIRPVYGGLAVGYNKGQIEKGATII 683
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVM--QNLPDKH--QTL 172
V T GR ++G L + F +LDEADRM+D MGF I ++ +++P K QTL
Sbjct: 684 VGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTL 743
Query: 173 LFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXX 231
+FSAT P ++ A+ +L + + + + K+ + V+Q EK +EK D+
Sbjct: 744 MFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGID 803
Query: 232 --XXXXXKSCHPFPL-TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 288
K+ + TIVFV ++ D ++ L + + A+ +HG R Q +R ALR F
Sbjct: 804 IDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQF 863
Query: 289 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348
RNGS +L+AT VA RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF ++
Sbjct: 864 RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE 923
Query: 349 RDMLLVAQIKKAIVDAE 365
D L++++ + + DA+
Sbjct: 924 -DCNLLSELVRVLSDAD 939
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 623 (224.4 bits), Expect = 2.7e-60, P = 2.7e-60
Identities = 135/377 (35%), Positives = 215/377 (57%)
Query: 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-G 60
K++ YT+ T IQ +P+ G D++ CA+TGSGKTAAF +P++ + + + G
Sbjct: 565 KNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAG 624
Query: 61 DG---PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIV 117
+G P ++L PTREL QI E + + + V GG + + ++ G +I+
Sbjct: 625 EGGCYPRCIILTPTRELTDQIYNEGRKFAYQT-MMEIRPVYGGLAVGYNKGQIEKGATII 683
Query: 118 VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVM--QNLPDKH--QTL 172
V T GR ++G L + F +LDEADRM+D MGF I ++ +++P K QTL
Sbjct: 684 VGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTL 743
Query: 173 LFSATMPVEIEALAQEYLTDP-VQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXX 231
+FSAT P ++ A+ +L + + + + K+ + V+Q EK +EK D+
Sbjct: 744 MFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGID 803
Query: 232 --XXXXXKSCHPFPL-TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 288
K+ + TIVFV ++ D ++ L + + A+ +HG R Q +R ALR F
Sbjct: 804 IDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQF 863
Query: 289 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348
RNGS +L+AT VA RGLD+ GV HV+N D+P ++DY+HRIGRTGR G+ G+ATSF ++
Sbjct: 864 RNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE 923
Query: 349 RDMLLVAQIKKAIVDAE 365
D L++++ + + DA+
Sbjct: 924 -DCNLLSELVRVLSDAD 939
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 132/353 (37%), Positives = 203/353 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PT IQ + +P ++G DLLG A+TG+GKTAAF++P+I + +L+L
Sbjct: 22 YKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLIL 81
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QI + + S L KT +V GG Q + G+ I+VATPGR LD +
Sbjct: 82 TPTRELASQIMQNIDDYSDGL-GLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLI 140
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ G+ + + +LDEAD MLDMGF ++ ++ LP QTLLFSATMP EIE LA+
Sbjct: 141 ETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEA 200
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
LTDP ++++ ++ T + + + V +K ++ + ++F
Sbjct: 201 ILTDPTKIQI---TAETVTIDLVNQSVYHLDKSNKVPLLFNILTKADYEK------VLIF 251
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+ K D + +AL + A +LH G+ Q+ RE AL++F++ + +LVATDVA+RG+DV
Sbjct: 252 CKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDV 311
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ V+N +LP+ +Y+HRIGRT R G G A SF + D+ + I+ +I
Sbjct: 312 DNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSI 364
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 140/358 (39%), Positives = 211/358 (58%)
Query: 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG--DGPLALVL 68
+PT IQ+QA P+ L G DL+ A+TG+GKT ++ +P H +Q P+ R +GP LVL
Sbjct: 244 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQ-PISREQRNGPGMLVL 302
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA +E E S K+ + GG N Q ++ GV I++ATPGR L+ L
Sbjct: 303 TPTRELALHVEAECSKYSYK--GLKSICIYGGRNRNGQIEDISKGVDIIIATPGR-LNDL 359
Query: 129 QQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALA 186
Q N+ +L ++++++DEAD+MLDM FEPQIR+++ ++ PD+ QT++ SAT P + LA
Sbjct: 360 QMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR-QTVMTSATWPDTVRQLA 418
Query: 187 QEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLT 245
YL DP+ V VG ++ N + Q + +E EK ++ P
Sbjct: 419 LSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEK--------RALTQEFVENMSPNDKV 470
Query: 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305
I+FV +K D++S +G+ A +LHG QSD+E A+ DF++G+ IL+ TD+ SRG
Sbjct: 471 IMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRG 530
Query: 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363
LD+ V HV N D P+ ++ YVHR+G GR G G + + T RD + ++ K I+D
Sbjct: 531 LDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIK-ILD 587
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 140/355 (39%), Positives = 207/355 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL--AL 66
Y + T +Q Q +P+AL G+D++ CA+TG+GKTAAF +P+++ A+ P D PL AL
Sbjct: 21 YQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAK-PA---DKPLLRAL 76
Query: 67 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLD 126
V+ PTRELA Q+ ++ S+ L KT V GG N+ QR + GV I+VATPGR D
Sbjct: 77 VMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFD 135
Query: 127 HLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALA 186
+ Q N LS V+ +++DEADRMLD+GF I +V + + HQT+LFSAT ++ L+
Sbjct: 136 IIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLS 195
Query: 187 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
+ L P V V + ++ + V Q++ +V + K + + + +
Sbjct: 196 HKMLNQPQWVNVAE-NTTASTVEQLVYRVDKRRKAELLSELVGR---------NNWRQVL 245
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
VF K + + + L +G+ A HG + Q R L DF+ G +LVATDVA+RGL
Sbjct: 246 VFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGL 305
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
D+ + V+NL+LP EDYVHRIGRTGR G G+A SF + D ++A+I+ I
Sbjct: 306 DIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALI 360
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 133/340 (39%), Positives = 198/340 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVG---RGDGPL 64
YT+PT+IQ +A+PV L+G+D++ A+TG+GKTA+F +P+++ +Q G R
Sbjct: 21 YTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIR 80
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
AL+L PTRELA Q+E + ++ LD A+ GG + EQ+ L GV I+VATPGR
Sbjct: 81 ALILVPTRELAVQVEASISQYAKYLDISSMAMY-GGVDAQEQKQRLIWGVDILVATPGRL 139
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 184
LD Q + ++LDEADRMLDMGF I ++++ LP+ Q LLFSATM E+
Sbjct: 140 LDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNLLFSATMSEEVRG 199
Query: 185 LAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPL 244
LA+ + PV++ +G + + Q L V +K ++ +
Sbjct: 200 LAKRTIHKPVEISIGADKASKPKIEQWLVTV---DKANKSALLSHIITTQNWQQA----- 251
Query: 245 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 304
++F+E K ++ L G+ A ++H GR Q RE L DF++G LVAT +A+R
Sbjct: 252 -LIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAIAAR 310
Query: 305 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 344
GLD+ ++ V+N DLP V+DY+HRIGRTGR G+ G+A S
Sbjct: 311 GLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAIS 350
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 140/355 (39%), Positives = 207/355 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL--AL 66
Y + T +Q Q +P+AL G+D++ CA+TG+GKTAAF +P+++ A+ P D PL AL
Sbjct: 21 YQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAK-PA---DKPLLRAL 76
Query: 67 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLD 126
V+ PTRELA Q+ ++ S+ L KT V GG N+ QR + GV I+VATPGR D
Sbjct: 77 VMTPTRELAIQVCANIQKYSQFLP-LKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFD 135
Query: 127 HLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALA 186
+ Q N LS V+ +++DEADRMLD+GF I +V + + HQT+LFSAT ++ L+
Sbjct: 136 IIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSDAVKQLS 195
Query: 187 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTI 246
+ L P V V + ++ + V Q++ +V + K + + + +
Sbjct: 196 HKMLNQPQWVNVAE-NTTASTVEQLVYRVDKRRKAELLSELVGR---------NNWRQVL 245
Query: 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGL 306
VF K + + + L +G+ A HG + Q R L DF+ G +LVATDVA+RGL
Sbjct: 246 VFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGL 305
Query: 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
D+ + V+NL+LP EDYVHRIGRTGR G G+A SF + D ++A+I+ I
Sbjct: 306 DIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALI 360
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 139/354 (39%), Positives = 207/354 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRD+L A+TGSGKTAAF +P+I ++ P AL+L
Sbjct: 223 YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDKT-----PSALIL 277
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE++ K L L KT ++VGG + Q LR V +++ATPGR LD +
Sbjct: 278 TPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDII 337
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + SLS + V++DEAD ML MGF+ Q+ +V+++ P QT+L SAT+P IE L +
Sbjct: 338 KQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQ 397
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L +PV++ G + P A+V QI+ V + K + K P P+ +VF
Sbjct: 398 LLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILNDQ-----KLFKP-PV-LVF 450
Query: 249 VERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +SEA+ GL++ ++H ++Q +R L+ G ++V+T V RGLD
Sbjct: 451 VDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V VVN D+P ++++YVH++GR GR G G A +F + L + K +
Sbjct: 511 LVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRV 564
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 133/353 (37%), Positives = 198/353 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT +Q + +PVAL +DL+ ++TGSGKTA+F IP+ + + + + P ALVL
Sbjct: 24 YEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE--MVEWEENK---PQALVL 78
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+++++ + R K A + G + A Q+ EL+ IVV TPGR LDH+
Sbjct: 79 TPTRELAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHI 137
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++G SL R+ ++++DEAD ML+MGF Q+ ++ LP K T+LFSAT+P ++E L++
Sbjct: 138 EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRT 197
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
Y+ P +++ T + L +V E EK+ SC I+F
Sbjct: 198 YMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLS---LLKDVTTIENPDSC------IIF 248
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+ D V L +HGG Q DR + DFR G LVATDVA+RG+D+
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDI 308
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ HV+N D+P E YVHR GRTGR G+ G+A +F T + + +I+ I
Sbjct: 309 DNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 133/353 (37%), Positives = 198/353 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT +Q + +PVAL +DL+ ++TGSGKTA+F IP+ + + + + P ALVL
Sbjct: 24 YEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE--MVEWEENK---PQALVL 78
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+++++ + R K A + G + A Q+ EL+ IVV TPGR LDH+
Sbjct: 79 TPTRELAVQVKEDITNIGR-FKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHI 137
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++G SL R+ ++++DEAD ML+MGF Q+ ++ LP K T+LFSAT+P ++E L++
Sbjct: 138 EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRT 197
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
Y+ P +++ T + L +V E EK+ SC I+F
Sbjct: 198 YMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLS---LLKDVTTIENPDSC------IIF 248
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+ D V L +HGG Q DR + DFR G LVATDVA+RG+D+
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDI 308
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ HV+N D+P E YVHR GRTGR G+ G+A +F T + + +I+ I
Sbjct: 309 DNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYI 361
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 137/347 (39%), Positives = 198/347 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+ PT+IQ+ P+ +GRD++G AETGSGKT AF +P ++ + + PLA+V+
Sbjct: 93 FASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVI 152
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
+PTRELA QI ++ + +D + A + GG EQR L+ ++VVATPGR D
Sbjct: 153 SPTRELAMQIYDQLVKFAEKVD-IQVACIFGGVKKDEQREALKSA-AVVVATPGRLKDLQ 210
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQ 187
G+ L RV +++LDEADRMLD GFE I++++ +P K QT++F+AT P + LA
Sbjct: 211 NDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLAS 270
Query: 188 EYLTDPVQVKVGKVSS--PTAN--VIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFP 243
++T PV V +G S P AN + Q++E V +EK R
Sbjct: 271 TFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDK----- 325
Query: 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303
+ F K V L +G +HG +Q +R +L F++G+ +LVATDVA+
Sbjct: 326 -VLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAA 384
Query: 304 RGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
RGLD+ V VVN+ P TVEDYVHRIGRTGR G+ G A + +T+ D
Sbjct: 385 RGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 131/353 (37%), Positives = 205/353 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ QA+P L+G+++L A+TG+GKTA+F +P++ H A P R +++L
Sbjct: 21 YQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL-HRFADAPKIRPKRVRSIIL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+E+ + ++ L A+ GG + A Q+ L GV ++VATPGR LD
Sbjct: 80 TPTRELALQVEQNINQYAKYLPLTAMAMY-GGVDAAPQKKRLIEGVDLLVATPGRLLDMY 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
Q VS ++LDEADRMLDMGF I +++ LP++ Q LLFSAT+ +++ALA+
Sbjct: 139 TQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKT 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ D +++++ + ++ + + Q L V ++ K K + + ++F
Sbjct: 199 AIPDAIEIEISRKNAASTQIDQWLTTVDKDRK--------SALLSHLIKE-NNWAQALIF 249
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
++ K ++ L G+ A A H GR+Q+ RE L DF+ G LVAT V SRG+D+
Sbjct: 250 IQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDI 309
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ V+N DLP +DY+HRIGRTGR G+ G+A SF + D + I++ +
Sbjct: 310 DALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRL 362
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 131/353 (37%), Positives = 205/353 (58%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ QA+P L+G+++L A+TG+GKTA+F +P++ H A P R +++L
Sbjct: 21 YQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL-HRFADAPKIRPKRVRSIIL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+E+ + ++ L A+ GG + A Q+ L GV ++VATPGR LD
Sbjct: 80 TPTRELALQVEQNINQYAKYLPLTAMAMY-GGVDAAPQKKRLIEGVDLLVATPGRLLDMY 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
Q VS ++LDEADRMLDMGF I +++ LP++ Q LLFSAT+ +++ALA+
Sbjct: 139 TQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKT 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ D +++++ + ++ + + Q L V ++ K K + + ++F
Sbjct: 199 AIPDAIEIEISRKNAASTQIDQWLTTVDKDRK--------SALLSHLIKE-NNWAQALIF 249
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
++ K ++ L G+ A A H GR+Q+ RE L DF+ G LVAT V SRG+D+
Sbjct: 250 IQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDI 309
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
+ V+N DLP +DY+HRIGRTGR G+ G+A SF + D + I++ +
Sbjct: 310 DALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRL 362
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 136/368 (36%), Positives = 213/368 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K ++ +++PT IQA+A+P+AL+G+D+L A TGSGKTAAF +P+++ + + R
Sbjct: 202 LKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRA 261
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
L+L PTRELA Q + ++ L++ + + ++VGG + Q ELR +V+AT
Sbjct: 262 IR--VLILLPTRELALQCQSVMENLAQ-FSNITSCLIVGGLSNKAQEVELRKSPDVVIAT 318
Query: 121 PGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179
PGR +DHL + L + +ILDEADR+LDMGF+ +I +++++ P QT+LFSAT+
Sbjct: 319 PGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLN 378
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
E++ LA+ L P++V+V + T+ + Q K+ DR +
Sbjct: 379 DEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGG 438
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
TI+F K + L A LHG +Q R +L+ FR+G N L+A+
Sbjct: 439 -----TIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLAS 493
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI-K 358
DVASRGLD++GV V+N ++P + +Y+HR+GRT R G G++ SF TD D L+ I
Sbjct: 494 DVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVT 553
Query: 359 KAIVDAES 366
KA A+S
Sbjct: 554 KARNKAKS 561
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 137/351 (39%), Positives = 201/351 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y P++IQ Q++P+ L+G D++G A+TG+GKTAAF +P++ H + P R P AL+L
Sbjct: 26 YEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL-HRI--DPSKRE--PQALIL 80
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA Q+ + ++ + V GG + Q +R G IVVATPGR DHL
Sbjct: 81 APTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHL 140
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++ L+ V+ ++LDEAD ML +GF + + + +P+ QT+LFSAT+P I A+A+
Sbjct: 141 RRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAER 200
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+L DP VK+ S T V I E+ D+ F I+F
Sbjct: 201 HLKDPKHVKI---QSKTQTVTAI-EQAHLLVHADQKTSAVLSLL-----EVEDFDALIMF 251
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
V K +++ AL A+G A AL+G Q+ RE + ++G +I+VATDVA+RGLDV
Sbjct: 252 VRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAARGLDV 311
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
+ HV N+D+P E YVHRIGRTGR G G+A T R+ ++ I++
Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIER 362
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 139/353 (39%), Positives = 195/353 (55%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
YT PT +QA A+P AL DLL A+TG+GKTAAF +P +Q ++ P G G GP LVL
Sbjct: 21 YTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR-LSSPPQGPGRGPRVLVL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELAQQ+ V+ + ++ ++GG Q L V +VATPGR +D L
Sbjct: 80 TPTRELAQQVTDAVRTYGAFM-RVRSGAILGGMPYHAQLRLLSAPVDFIVATPGRLVDLL 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ + LSR+ ++LDEADRMLDMGF + + P QTLLF+ATM + LA
Sbjct: 139 DRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAMARLAGR 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L +P ++ + + ++ Q L + +R I+F
Sbjct: 199 LLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRR--------AIIF 250
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K + ++ L A+G A ALHG Q+ R + + G +LVATDVA+RGLDV
Sbjct: 251 SATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDV 310
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
G++HV+N DLPK EDYVHRIGRTGR G+ G A SF + ++ +A+I++ I
Sbjct: 311 TGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYI 363
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 386 (140.9 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
Identities = 78/166 (46%), Positives = 109/166 (65%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR----GDGPL 64
Y PT IQ QA+P+ L RD++G AETGSGKTAAF IP++ + R GP
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 65 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF 124
A++LAPTRELAQQIE+E + L + V+GG + +Q LR G IV+ATPGR
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPL-GIRPVAVIGGISREDQGFRLRMGCEIVIATPGRL 529
Query: 125 LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170
+D L+ LSR ++V+LDEADRM+DMGFEP ++++++++P +Q
Sbjct: 530 IDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 256 (95.2 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 268 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYV 327
+A LHGG+ Q RE AL + + G+ +ILVATDVA RG+D+ V+ VVN D+ K +EDY+
Sbjct: 671 NACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYI 730
Query: 328 HRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364
HRIGRTGR G G A +F T D + ++K+AI+++
Sbjct: 731 HRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES 767
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 134/354 (37%), Positives = 210/354 (59%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRD++ A+TGSGKTAAF +P+I + +T + P AL+L
Sbjct: 229 YEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKVLNET-----ETPSALIL 283
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA QIE++ K L L + +T ++VGG + Q L+ V +++ATPGR L+ L
Sbjct: 284 APTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEIL 343
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + L + V++DE D ML MGF+ Q+ ++++++ HQT+L SAT+PV IE LA +
Sbjct: 344 RQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGIEHLANQ 403
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L + V++ +G+ + P +NV QI+ V E K + K P P+ +VF
Sbjct: 404 LLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILNDK-----KLFKP-PV-LVF 456
Query: 249 VERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +S+A+ GL ++H ++Q +R + L+ ++V+T V RGLD
Sbjct: 457 VDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLD 516
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++ V VVN D+P ++++YVH++GR GR G G A +F + L + K +
Sbjct: 517 LVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVKRV 570
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 137/348 (39%), Positives = 196/348 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQA P L+GRD++G AETGSGKT AF IP +Q+ + P LV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSD--NKSVPRVLVV 242
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
+PTRELA Q + + +L + + K +V GG +EQ + S+++ TPGR LD +
Sbjct: 243 SPTRELAIQTYENLNSLIQGTN-LKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLI 300
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-----KHQTLLFSATMPVEIE 183
G+ S+V +++LDEADRMLD GFE IR ++ + PD QT+ FSAT P +
Sbjct: 301 NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVR 360
Query: 184 ALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPF 242
ALA +L DPV++ +G + + N+ QI+E + + +R
Sbjct: 361 ALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKI 420
Query: 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVA 302
++FV K V E +A + V +HG +Q R AL DF++G +LVATDVA
Sbjct: 421 ---LIFVLYKKEAARV-EGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVA 476
Query: 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
+RGLD+ V V+N+ P T+EDYVHRIGRTGR + G A +F+T +D
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 141/358 (39%), Positives = 202/358 (56%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC-VAQTPVGR 59
+ ++E + T IQAQ++P L G+D++G +TGSGKTAAF + ++ + V + V
Sbjct: 16 LANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ- 74
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
ALVL PTRELA Q+ +++ L R++ + K + GG + Q L G I+V
Sbjct: 75 -----ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVG 129
Query: 120 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179
TPGR LDHL + LS ++ ++LDEADRML+MGF+ + ++ P + QTLLFSAT P
Sbjct: 130 TPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYP 189
Query: 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSC 239
IE +AQ + + +KV + + T+++ Q KV + D
Sbjct: 190 ASIEQIAQSVTRNALMIKV-EATHDTSSIRQYFYKVEGSAARDEALETLLLH-------- 240
Query: 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299
H ++VF K V++AL G + LHG Q +R+ AL F N S +ILVAT
Sbjct: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
Query: 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357
DVA+RGLDV + V N DL + E +VHRIGRTGR GS G A SF++D + VAQI
Sbjct: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQI 358
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 142/365 (38%), Positives = 213/365 (58%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCV-AQTPVGR 59
++ IE ++T+PT IQ++A+P AL G+D++G A+TGSGKTAAF IP++Q AQ P
Sbjct: 135 LESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY-- 192
Query: 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVA 119
ALVLAPTREL QI+ AL S+ +++ +VGG ++ +Q +L ++VA
Sbjct: 193 ----FALVLAPTRELTFQIKDTFDALGSSM-GLRSSCIVGGMDMMDQARDLMRKPHVIVA 247
Query: 120 TPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178
TPGR +DHL+ SL + ++++DEADR+LDM F P + ++++ +P K T LFSATM
Sbjct: 248 TPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATM 307
Query: 179 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKS 238
+IE L + L +PV+V V N++Q + V++ K KS
Sbjct: 308 TNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYK---NTILIHLLNEFMGKS 364
Query: 239 CHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNIL 296
F T+ +R AL+A G +AV LHG +QS R +L F++ NIL
Sbjct: 365 IIVFTRTVAHAQRT--------ALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANIL 416
Query: 297 VATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356
VATDVA+RGLD+ V V+N D+P + Y+HR+GRT R G G++ S T D+ + +
Sbjct: 417 VATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLR 476
Query: 357 IKKAI 361
I+ +
Sbjct: 477 IESVL 481
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 141/378 (37%), Positives = 205/378 (54%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQ------HCV-- 52
+K ++ Y T IQ +A+PV G DLL A+TG+GKTAAF++P++ H
Sbjct: 13 LKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKS 72
Query: 53 ---------AQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 103
A+ G AL+L PTRELA Q+ +K S+ L K+ +V GG +
Sbjct: 73 STTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLP-IKSGVVYGGGKM 131
Query: 104 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163
A Q L+ G+ ++VATPGR L+HL N LS+V F++LDEADRMLDMGF I +++
Sbjct: 132 ASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLL 191
Query: 164 NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 223
+ KHQTL+FSAT +++LA + L P + V K ++ + + Q + V+E K +
Sbjct: 192 AVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKREL 251
Query: 224 XXXXXXXXXXXXXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 283
+ + +VF K + +++ L +G+ A HG + Q R
Sbjct: 252 LSELI---------GVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNK 302
Query: 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343
AL F G +LVATDVA+RGLD+ +A VVN LP EDYVHR+GRTGR G G A
Sbjct: 303 ALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAI 362
Query: 344 SFYTDRDMLLVAQIKKAI 361
S + +D + I++ I
Sbjct: 363 SLVSPKDERFLENIEQLI 380
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 141/349 (40%), Positives = 198/349 (56%)
Query: 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVLAPTRE 73
IQ + A+ GRD++G A TG+GKT AF IP+I + GRG P LVLAPTRE
Sbjct: 142 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRE 201
Query: 74 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT 133
LA+Q+EKE + + SLD T + GGT I +Q EL G+ + V TPGR +D +++G
Sbjct: 202 LARQVEKEFRESAPSLD---TICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGAL 258
Query: 134 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP 193
+LS V FV+LDEAD+ML +GF + ++Q LP K Q+++FSATMP I +L ++YL +P
Sbjct: 259 NLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNP 318
Query: 194 VQVK-VGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVFVERK 252
+ + VG A+ I + +++ K C IVF + K
Sbjct: 319 LTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGK-C------IVFTQTK 371
Query: 253 TRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312
D ++ L A+ ALHG +Q+ RE L FR+G+ +ILVATDVA+RGLDV V
Sbjct: 372 RDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVD 430
Query: 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
V++ +LP E +VHR GRTGR G G A + V I+K +
Sbjct: 431 LVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEV 479
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 131/351 (37%), Positives = 197/351 (56%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
+T T IQA +P L+G+D+LG A+TG+GKTAAF +P + T + + P +VL
Sbjct: 35 FTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKI--DTSIKK---PQLMVL 89
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
APTRELA Q+ + +++ + + + A + GG + Q +L G +VV TPGR +DHL
Sbjct: 90 APTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHL 149
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
++ + L + +LDEAD ML+MGF I+ ++ ++P Q LFSATMP I +A
Sbjct: 150 RRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANR 209
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+L DP +KV V AN+ Q KVS K+ + I+F
Sbjct: 210 FLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVE---------YDAMIIF 260
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
V + +++E L G A+AL+G NQ+ RE + ++G ++ILVATDV +RGLD+
Sbjct: 261 VRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDI 320
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359
++ V+N DLP E YVHRIGRTGR G G + +F R+M + ++
Sbjct: 321 PRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYER 371
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 132/363 (36%), Positives = 204/363 (56%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M IE + PT IQ QA+P A++G DL+ ++TGSGKT AF IP +Q + +
Sbjct: 13 MSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKR 72
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
D P ++L PTRELA+Q+ +++ + + +K +++GG N +Q L+ +VAT
Sbjct: 73 D-PRVVILTPTRELAKQVFSQLRLFTANTQ-YKAVLILGGENFNDQVKVLQKEPEFIVAT 130
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMP 179
PGR DHL QG+ L+ + +ILDEADRMLD+GF ++ ++ + K QTLLFSAT+
Sbjct: 131 PGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLD 190
Query: 180 -VEIEALAQEYLTDPVQVKVGKVSSPTANVIQ---ILEKVSENEKVDRXXXXXXXXXXXX 235
++ A E LT P ++ + S ++ + + + +++ E +
Sbjct: 191 HAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEAL-------LQHFLVT 243
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
KS I+F ++ D +++ L + L+AVAL G NQ R + F G I
Sbjct: 244 EKSQQ----IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355
LV TD+ASRGLD++ V+HV+N D+PK E++VHRIGRTGR G+ G A S D L +
Sbjct: 300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359
Query: 356 QIK 358
++
Sbjct: 360 NVE 362
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 132/363 (36%), Positives = 204/363 (56%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
M IE + PT IQ QA+P A++G DL+ ++TGSGKT AF IP +Q + +
Sbjct: 13 MSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKR 72
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
D P ++L PTRELA+Q+ +++ + + +K +++GG N +Q L+ +VAT
Sbjct: 73 D-PRVVILTPTRELAKQVFSQLRLFTANTQ-YKAVLILGGENFNDQVKVLQKEPEFIVAT 130
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMP 179
PGR DHL QG+ L+ + +ILDEADRMLD+GF ++ ++ + K QTLLFSAT+
Sbjct: 131 PGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLD 190
Query: 180 -VEIEALAQEYLTDPVQVKVGKVSSPTANVIQ---ILEKVSENEKVDRXXXXXXXXXXXX 235
++ A E LT P ++ + S ++ + + + +++ E +
Sbjct: 191 HAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEAL-------LQHFLVT 243
Query: 236 XKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295
KS I+F ++ D +++ L + L+AVAL G NQ R + F G I
Sbjct: 244 EKSQQ----IIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKI 299
Query: 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355
LV TD+ASRGLD++ V+HV+N D+PK E++VHRIGRTGR G+ G A S D L +
Sbjct: 300 LVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLK 359
Query: 356 QIK 358
++
Sbjct: 360 NVE 362
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 135/357 (37%), Positives = 204/357 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y T IQAQ++P L+G D++G +TGSGKTAAF + ++ + V R LVL
Sbjct: 21 YNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN----KLDVKRFRIQ-TLVL 75
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ +E++ L+R + + K + GG + Q L G I+V TPGR +DHL
Sbjct: 76 CPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHL 135
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ LS ++ ++LDEADRML+MGF+PQ+ +++ P + QTLLFSAT P +I+++A++
Sbjct: 136 DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQ 195
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ +PV VK V+ + Q ++ +++ R +S +VF
Sbjct: 196 IMYNPVMVKAA-VTHEKNTIEQHFYQLDDDKS--RMQALQLLLLEHKPESA------VVF 246
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K +V++ L G +ALHG Q DR+ L F N S +LVATDVA+RGLD+
Sbjct: 247 CNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDI 306
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365
+ V N + E ++HRIGRTGR GS G A +FY D+D +A +++ + D E
Sbjct: 307 DALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYL-DRE 362
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 135/357 (37%), Positives = 204/357 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y T IQAQ++P L+G D++G +TGSGKTAAF + ++ + V R LVL
Sbjct: 21 YNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN----KLDVKRFRIQ-TLVL 75
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ +E++ L+R + + K + GG + Q L G I+V TPGR +DHL
Sbjct: 76 CPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHL 135
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+ LS ++ ++LDEADRML+MGF+PQ+ +++ P + QTLLFSAT P +I+++A++
Sbjct: 136 DRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQ 195
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ +PV VK V+ + Q ++ +++ R +S +VF
Sbjct: 196 IMYNPVMVKAA-VTHEKNTIEQHFYQLDDDKS--RMQALQLLLLEHKPESA------VVF 246
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
K +V++ L G +ALHG Q DR+ L F N S +LVATDVA+RGLD+
Sbjct: 247 CNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDI 306
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365
+ V N + E ++HRIGRTGR GS G A +FY D+D +A +++ + D E
Sbjct: 307 DALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYL-DRE 362
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 135/368 (36%), Positives = 210/368 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K++ Y + T IQA+ +P L G+D++G A+TGSGKTAAF + ++ + R
Sbjct: 22 VKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKL--EVKKFRI 79
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
++V+ PTRELA Q+ KE++ L+R + + K + GGT Q L G ++V T
Sbjct: 80 Q---SMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGT 136
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +H+ +G L ++ ++LDEADRML+MGF+ + ++ P QTLLFSAT P
Sbjct: 137 PGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPD 196
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+I+++++ +TDPV VK+ S + + Q KV ++ DR +S
Sbjct: 197 QIKSISESIMTDPVMVKIAS-SEDQSTISQKFFKVGNDD--DRLDALRLLLLGNQVES-- 251
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
T +F K +V++AL +G +ALHG Q DR+ L F N S +ILVATD
Sbjct: 252 ----TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATD 307
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK-- 358
VA+RGLD+ + V+N + + E +VHRIGRTGR GS G A S ++D++ V ++
Sbjct: 308 VAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDY 367
Query: 359 -KAIVDAE 365
+A++ E
Sbjct: 368 LEAVITPE 375
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 135/368 (36%), Positives = 210/368 (57%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K++ Y + T IQA+ +P L G+D++G A+TGSGKTAAF + ++ + R
Sbjct: 22 VKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKL--EVKKFRI 79
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
++V+ PTRELA Q+ KE++ L+R + + K + GGT Q L G ++V T
Sbjct: 80 Q---SMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGT 136
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 180
PGR +H+ +G L ++ ++LDEADRML+MGF+ + ++ P QTLLFSAT P
Sbjct: 137 PGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPD 196
Query: 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCH 240
+I+++++ +TDPV VK+ S + + Q KV ++ DR +S
Sbjct: 197 QIKSISESIMTDPVMVKIAS-SEDQSTISQKFFKVGNDD--DRLDALRLLLLGNQVES-- 251
Query: 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300
T +F K +V++AL +G +ALHG Q DR+ L F N S +ILVATD
Sbjct: 252 ----TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATD 307
Query: 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK-- 358
VA+RGLD+ + V+N + + E +VHRIGRTGR GS G A S ++D++ V ++
Sbjct: 308 VAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDY 367
Query: 359 -KAIVDAE 365
+A++ E
Sbjct: 368 LEAVITPE 375
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 130/337 (38%), Positives = 194/337 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PT IQ QA+PV L GRDL+ A+TG+GKTA+F +P+++ + Q R AL+L
Sbjct: 21 YQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK-LRQGQTQRKKRVRALIL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ ++V+ + K+ V GG + Q+ L GV ++VATPGR +D
Sbjct: 80 VPTRELAMQVAEKVEQYGKDT-GLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
Q + V+LDEADRMLDMGF I +++ LP + Q LLFSAT+ ++ LA+
Sbjct: 139 GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKT 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ DP ++ + + +N+ Q L V ++ K + + ++F
Sbjct: 199 AVRDPHEISIAANQASKSNISQWLITVDKDTK---------SALLSHLINEQQWDQALIF 249
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+E K ++ L G+HA A H GR+Q+ R L DF++G LVAT VA+RG+D+
Sbjct: 250 IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDI 309
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
++ VVN DLP ++YVHRIGRTGR ++G+A SF
Sbjct: 310 DQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISF 346
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 130/337 (38%), Positives = 194/337 (57%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PT IQ QA+PV L GRDL+ A+TG+GKTA+F +P+++ + Q R AL+L
Sbjct: 21 YQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK-LRQGQTQRKKRVRALIL 79
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA Q+ ++V+ + K+ V GG + Q+ L GV ++VATPGR +D
Sbjct: 80 VPTRELAMQVAEKVEQYGKDT-GLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLY 138
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
Q + V+LDEADRMLDMGF I +++ LP + Q LLFSAT+ ++ LA+
Sbjct: 139 GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKT 198
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
+ DP ++ + + +N+ Q L V ++ K + + ++F
Sbjct: 199 AVRDPHEISIAANQASKSNISQWLITVDKDTK---------SALLSHLINEQQWDQALIF 249
Query: 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308
+E K ++ L G+HA A H GR+Q+ R L DF++G LVAT VA+RG+D+
Sbjct: 250 IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDI 309
Query: 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345
++ VVN DLP ++YVHRIGRTGR ++G+A SF
Sbjct: 310 DQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISF 346
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 567 (204.7 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 131/354 (37%), Positives = 194/354 (54%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y +PT IQA +P+AL+GRDL A TGSGKTAAF +P ++ + + R L+L
Sbjct: 187 YKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPK--RVFATRVLIL 244
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QI ++ L++ D K ++VGG ++ EQ LR IVVATPGR +DHL
Sbjct: 245 TPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHL 303
Query: 129 QQG-NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187
+ + L ++ +ILDEADR+L GF +I E+++ P + QT+LFSATM E++ L +
Sbjct: 304 RNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
Query: 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIV 247
L P+++ + + + + ++ + ++ KS I+
Sbjct: 364 LSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTF-KS-----KVII 417
Query: 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
F K + GL A LHG Q+ R +L FR + L+ATDVA+RGLD
Sbjct: 418 FSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLD 477
Query: 308 VMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361
++GV V+N P+ ++ YVHR+GRT R G G A +F TD D L+ I K +
Sbjct: 478 IIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKV 531
Score = 38 (18.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 343 TSFYTDRDMLLVAQIKKAIVDAESGNAVAFA 373
T F T+++ LVAQ +K +G + A
Sbjct: 599 TWFMTEKEKKLVAQAEKDSAGNPAGGELVSA 629
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 129/323 (39%), Positives = 198/323 (61%)
Query: 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68
Y PT IQ Q +PV L GRD+L A+TGSGKTAAF +P+I + ++ P AL+L
Sbjct: 223 YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT-----PSALIL 277
Query: 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128
PTRELA QIE++ K L L KT ++VGG + Q L+ V +++ATPGR LD +
Sbjct: 278 TPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDII 337
Query: 129 QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 188
+Q + L V V++DEAD ML MGF+ Q+ ++++N+P+ QT+L SAT+P IE LA +
Sbjct: 338 KQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQ 397
Query: 189 YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRXXXXXXXXXXXXXKSCHPFPLTIVF 248
L +PV++ G+ + P ANV QI+ V + K + K P P+ +VF
Sbjct: 398 LLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDK-----KLFKP-PV-LVF 450
Query: 249 VERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD 307
V+ K D +SEA+ GL ++++H ++Q +R++ L+ G ++V+T V RGLD
Sbjct: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
Query: 308 VMGVAHVVNLDLPKTVEDYVHRI 330
++ V VVN D+P ++++YVH++
Sbjct: 511 LISVRLVVNFDMPSSMDEYVHQL 533
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 131/356 (36%), Positives = 197/356 (55%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K++ + + + T IQ QA+P+ ++GRDLL ++TGSGKT AF +PM+ H +T
Sbjct: 17 LKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML-HKSLKTKAFSA 75
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
P L+L PTRELA+Q+ E++++ L S+ ++ GG N +Q L G +VAT
Sbjct: 76 KDPRGLILVPTRELAKQVYGELRSMLGGL-SYTATLITGGENFNDQVKALARGPRFIVAT 134
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH-QTLLFSATMP 179
PGR DHL + L + ++LDEADRMLD+GF ++R + + QTL+FSAT+
Sbjct: 135 PGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLD 194
Query: 180 -VEIEALAQEYLTDPVQVKVGKVSSPTANVIQ---ILEKVSENEKV-DRXXXXXXXXXXX 234
++ +A E L +P ++ +G S ++ Q + + + E + DR
Sbjct: 195 HADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE----- 249
Query: 235 XXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 294
+ I+F + D ++E L L AVAL G NQ+ R + + F
Sbjct: 250 -------YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 295 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
ILV TDVASRGLD+ V HV+N D+PK E+YVHR+GRTGR G+ G A S +D
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 131/356 (36%), Positives = 197/356 (55%)
Query: 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG 60
+K++ + + + T IQ QA+P+ ++GRDLL ++TGSGKT AF +PM+ H +T
Sbjct: 17 LKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML-HKSLKTKAFSA 75
Query: 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVAT 120
P L+L PTRELA+Q+ E++++ L S+ ++ GG N +Q L G +VAT
Sbjct: 76 KDPRGLILVPTRELAKQVYGELRSMLGGL-SYTATLITGGENFNDQVKALARGPRFIVAT 134
Query: 121 PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH-QTLLFSATMP 179
PGR DHL + L + ++LDEADRMLD+GF ++R + + QTL+FSAT+
Sbjct: 135 PGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLD 194
Query: 180 -VEIEALAQEYLTDPVQVKVGKVSSPTANVIQ---ILEKVSENEKV-DRXXXXXXXXXXX 234
++ +A E L +P ++ +G S ++ Q + + + E + DR
Sbjct: 195 HADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE----- 249
Query: 235 XXKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 294
+ I+F + D ++E L L AVAL G NQ+ R + + F
Sbjct: 250 -------YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 295 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350
ILV TDVASRGLD+ V HV+N D+PK E+YVHR+GRTGR G+ G A S +D
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
WARNING: HSPs involving 744 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 433 399 0.00097 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 994
No. of states in DFA: 610 (65 KB)
Total size of DFA: 214 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.68u 0.13s 30.81t Elapsed: 00:00:01
Total cpu time: 30.73u 0.13s 30.86t Elapsed: 00:00:02
Start: Thu May 9 14:10:31 2013 End: Thu May 9 14:10:33 2013
WARNINGS ISSUED: 2