Query 013962
Match_columns 433
No_of_seqs 257 out of 2716
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 00:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.5E-64 1.4E-68 456.5 34.7 357 2-365 104-464 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 1.2E-63 2.5E-68 426.7 31.6 349 2-365 74-423 (476)
3 PTZ00110 helicase; Provisional 100.0 2.6E-60 5.7E-65 456.9 41.1 356 2-365 143-500 (545)
4 PRK04837 ATP-dependent RNA hel 100.0 1.9E-59 4.1E-64 442.6 40.3 352 2-363 21-376 (423)
5 PRK11634 ATP-dependent RNA hel 100.0 6.7E-59 1.5E-63 450.6 42.7 347 2-362 19-365 (629)
6 COG0513 SrmB Superfamily II DN 100.0 3.1E-59 6.6E-64 445.1 39.2 352 1-364 41-396 (513)
7 PRK11776 ATP-dependent RNA hel 100.0 5.2E-59 1.1E-63 444.4 40.5 346 2-362 17-362 (460)
8 PRK10590 ATP-dependent RNA hel 100.0 5.7E-59 1.2E-63 441.8 40.3 352 2-363 14-366 (456)
9 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-58 3.1E-63 443.9 41.8 354 2-364 134-490 (518)
10 KOG0342 ATP-dependent RNA heli 100.0 9.6E-59 2.1E-63 408.4 32.7 350 1-359 94-447 (543)
11 KOG0333 U5 snRNP-like RNA heli 100.0 7.7E-59 1.7E-63 411.2 30.8 352 2-363 258-638 (673)
12 PRK04537 ATP-dependent RNA hel 100.0 6.3E-58 1.4E-62 441.7 39.4 351 2-362 22-377 (572)
13 KOG0328 Predicted ATP-dependen 100.0 2.6E-59 5.7E-64 383.5 24.6 347 1-362 39-386 (400)
14 PRK11192 ATP-dependent RNA hel 100.0 2.8E-57 6E-62 430.1 42.4 351 2-362 14-365 (434)
15 PRK01297 ATP-dependent RNA hel 100.0 3E-56 6.6E-61 426.2 41.8 351 2-362 100-455 (475)
16 KOG0345 ATP-dependent RNA heli 100.0 4.2E-57 9.2E-62 395.4 32.2 347 2-357 19-372 (567)
17 KOG0338 ATP-dependent RNA heli 100.0 5.3E-58 1.1E-62 404.5 25.4 349 1-360 193-544 (691)
18 PTZ00424 helicase 45; Provisio 100.0 2.5E-55 5.4E-60 414.3 40.5 346 2-362 41-387 (401)
19 KOG0336 ATP-dependent RNA heli 100.0 3.5E-56 7.6E-61 383.1 25.1 355 1-365 232-588 (629)
20 KOG0335 ATP-dependent RNA heli 100.0 1.5E-55 3.3E-60 394.6 29.6 363 2-365 87-460 (482)
21 KOG0340 ATP-dependent RNA heli 100.0 3.8E-55 8.2E-60 370.2 28.8 349 4-364 22-376 (442)
22 KOG0343 RNA Helicase [RNA proc 100.0 2.1E-54 4.5E-59 385.2 30.5 348 1-360 81-434 (758)
23 KOG0326 ATP-dependent RNA heli 100.0 6.7E-56 1.4E-60 369.6 18.0 346 2-363 98-443 (459)
24 KOG0348 ATP-dependent RNA heli 100.0 1.9E-54 4.1E-59 384.2 27.9 350 6-360 154-565 (708)
25 KOG0346 RNA helicase [RNA proc 100.0 9.2E-54 2E-58 371.3 30.4 355 1-363 31-424 (569)
26 KOG0339 ATP-dependent RNA heli 100.0 8.3E-53 1.8E-57 371.4 31.5 354 2-364 236-590 (731)
27 KOG0341 DEAD-box protein abstr 100.0 3.1E-55 6.8E-60 374.8 14.5 353 1-363 182-543 (610)
28 TIGR00614 recQ_fam ATP-depende 100.0 6.6E-52 1.4E-56 394.6 35.5 326 5-359 5-343 (470)
29 PLN03137 ATP-dependent DNA hel 100.0 3.6E-51 7.7E-56 401.9 36.7 325 6-358 455-796 (1195)
30 KOG0347 RNA helicase [RNA proc 100.0 2.7E-53 5.8E-58 378.0 18.5 371 1-388 193-609 (731)
31 TIGR03817 DECH_helic helicase/ 100.0 1.4E-50 2.9E-55 400.4 36.3 340 2-361 27-400 (742)
32 PRK11057 ATP-dependent DNA hel 100.0 5E-50 1.1E-54 391.2 36.0 322 6-358 20-352 (607)
33 KOG0334 RNA helicase [RNA proc 100.0 4.9E-50 1.1E-54 384.2 31.4 352 4-364 380-735 (997)
34 TIGR01389 recQ ATP-dependent D 100.0 6.4E-49 1.4E-53 385.0 36.5 322 6-358 8-340 (591)
35 KOG0350 DEAD-box ATP-dependent 100.0 6.5E-48 1.4E-52 340.1 25.8 347 3-363 151-554 (620)
36 COG0514 RecQ Superfamily II DN 100.0 2.1E-47 4.5E-52 355.2 28.2 325 6-359 12-347 (590)
37 KOG0327 Translation initiation 100.0 1.8E-47 3.9E-52 328.3 24.2 344 1-361 38-382 (397)
38 PRK13767 ATP-dependent helicas 100.0 2.1E-46 4.5E-51 378.0 35.1 335 6-348 27-397 (876)
39 KOG4284 DEAD box protein [Tran 100.0 8.9E-48 1.9E-52 348.7 22.0 343 2-351 38-381 (980)
40 KOG0332 ATP-dependent RNA heli 100.0 5.9E-47 1.3E-51 322.5 24.5 343 1-361 102-456 (477)
41 KOG0337 ATP-dependent RNA heli 100.0 6.5E-48 1.4E-52 333.3 18.9 347 1-360 33-379 (529)
42 TIGR00580 mfd transcription-re 100.0 3.3E-45 7E-50 365.2 40.0 311 6-349 447-770 (926)
43 PRK02362 ski2-like helicase; P 100.0 2.7E-46 5.8E-51 374.2 29.5 326 2-350 14-398 (737)
44 KOG0344 ATP-dependent RNA heli 100.0 6.1E-47 1.3E-51 341.6 22.0 358 2-371 149-515 (593)
45 PRK10689 transcription-repair 100.0 1.5E-44 3.3E-49 368.0 37.9 312 5-349 595-919 (1147)
46 PRK00254 ski2-like helicase; P 100.0 9.2E-45 2E-49 362.3 32.3 325 2-350 14-389 (720)
47 PRK10917 ATP-dependent DNA hel 100.0 2E-43 4.3E-48 348.4 38.3 310 6-347 257-587 (681)
48 COG1111 MPH1 ERCC4-like helica 100.0 1.9E-43 4.1E-48 314.3 33.2 329 8-352 12-484 (542)
49 TIGR00643 recG ATP-dependent D 100.0 5.2E-43 1.1E-47 343.3 38.4 313 4-347 229-564 (630)
50 COG1201 Lhr Lhr-like helicases 100.0 4.7E-43 1E-47 338.0 31.0 330 8-349 19-362 (814)
51 PRK01172 ski2-like helicase; P 100.0 4.7E-43 1E-47 348.8 29.5 320 3-349 15-378 (674)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-42 7.1E-47 334.1 32.9 320 7-346 12-388 (844)
53 TIGR03714 secA2 accessory Sec 100.0 8.6E-41 1.9E-45 321.0 32.8 364 10-394 67-590 (762)
54 PRK09751 putative ATP-dependen 100.0 8.9E-41 1.9E-45 342.1 34.4 308 31-345 1-381 (1490)
55 PHA02558 uvsW UvsW helicase; P 100.0 5.7E-41 1.2E-45 321.1 29.6 316 9-350 112-453 (501)
56 TIGR00963 secA preprotein tran 100.0 2.6E-40 5.6E-45 315.6 33.6 364 11-398 56-570 (745)
57 KOG0352 ATP-dependent DNA heli 100.0 6.4E-42 1.4E-46 296.8 20.4 330 6-357 14-370 (641)
58 PRK12898 secA preprotein trans 100.0 5.3E-40 1.2E-44 312.0 35.0 319 11-353 103-590 (656)
59 PRK09200 preprotein translocas 100.0 3.4E-40 7.4E-45 320.0 33.3 319 11-353 78-545 (790)
60 PRK09401 reverse gyrase; Revie 100.0 6.8E-39 1.5E-43 327.5 38.9 283 7-321 77-410 (1176)
61 KOG0351 ATP-dependent DNA heli 100.0 1.3E-40 2.8E-45 327.6 25.3 329 5-359 258-602 (941)
62 COG1202 Superfamily II helicas 100.0 1.2E-40 2.6E-45 299.1 22.7 331 4-349 209-553 (830)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.8E-39 6E-44 319.6 34.6 311 15-353 6-340 (819)
64 COG1204 Superfamily II helicas 100.0 6.4E-40 1.4E-44 320.8 27.5 322 5-346 25-405 (766)
65 PHA02653 RNA helicase NPH-II; 100.0 5.8E-39 1.3E-43 310.0 31.6 319 14-356 167-521 (675)
66 PRK11664 ATP-dependent RNA hel 100.0 7.7E-39 1.7E-43 317.3 32.3 311 15-352 9-342 (812)
67 PRK14701 reverse gyrase; Provi 100.0 1.1E-38 2.4E-43 332.5 32.3 322 7-357 76-464 (1638)
68 KOG0354 DEAD-box like helicase 100.0 4.6E-39 9.9E-44 303.0 26.0 331 9-356 60-536 (746)
69 COG1200 RecG RecG-like helicas 100.0 1.2E-37 2.6E-42 289.3 34.4 333 5-369 257-611 (677)
70 PRK13766 Hef nuclease; Provisi 100.0 1.7E-37 3.6E-42 315.0 38.3 327 8-350 12-480 (773)
71 KOG0353 ATP-dependent DNA heli 100.0 1.4E-38 3E-43 272.6 22.0 360 6-389 89-510 (695)
72 TIGR01587 cas3_core CRISPR-ass 100.0 3.3E-38 7.1E-43 292.8 26.4 300 28-350 1-337 (358)
73 KOG0329 ATP-dependent RNA heli 100.0 8.2E-40 1.8E-44 265.2 12.5 302 1-351 54-357 (387)
74 TIGR00603 rad25 DNA repair hel 100.0 1E-37 2.2E-42 299.9 27.7 316 9-352 253-610 (732)
75 COG1205 Distinct helicase fami 100.0 1.9E-37 4.2E-42 307.7 30.0 330 3-347 62-420 (851)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 2.6E-36 5.6E-41 276.5 32.2 297 15-334 1-357 (357)
77 PRK13104 secA preprotein trans 100.0 2.2E-36 4.8E-41 292.7 31.5 359 11-391 80-633 (896)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-36 2.4E-41 290.6 25.8 341 5-356 104-498 (1230)
79 TIGR01054 rgy reverse gyrase. 100.0 1.2E-35 2.6E-40 304.2 34.8 283 8-321 75-409 (1171)
80 COG1197 Mfd Transcription-repa 100.0 4.6E-35 1E-39 286.9 33.8 375 6-425 590-982 (1139)
81 COG1061 SSL2 DNA or RNA helica 100.0 5.5E-36 1.2E-40 280.9 24.3 302 9-336 34-376 (442)
82 PRK12906 secA preprotein trans 100.0 2.8E-35 6E-40 283.8 28.9 358 11-392 80-601 (796)
83 PRK12904 preprotein translocas 100.0 1.1E-34 2.5E-39 280.7 31.0 359 11-393 81-621 (830)
84 PRK04914 ATP-dependent helicas 100.0 2.5E-34 5.4E-39 286.1 33.9 335 11-357 152-611 (956)
85 PRK05580 primosome assembly pr 100.0 6.1E-34 1.3E-38 279.9 34.1 310 10-350 143-550 (679)
86 PRK12899 secA preprotein trans 100.0 8.7E-34 1.9E-38 274.2 32.9 373 4-398 82-734 (970)
87 PRK13107 preprotein translocas 100.0 3.3E-34 7.1E-39 276.8 27.8 367 12-400 81-646 (908)
88 KOG0948 Nuclear exosomal RNA h 100.0 8.3E-35 1.8E-39 268.6 17.6 314 11-347 129-537 (1041)
89 KOG0947 Cytoplasmic exosomal R 100.0 5E-34 1.1E-38 269.7 23.0 316 11-347 297-721 (1248)
90 TIGR00595 priA primosomal prot 100.0 6.8E-33 1.5E-37 263.0 29.2 292 30-350 1-382 (505)
91 PRK11131 ATP-dependent RNA hel 100.0 1.2E-32 2.5E-37 278.0 31.4 309 13-352 76-414 (1294)
92 COG4098 comFA Superfamily II D 100.0 1.7E-31 3.7E-36 226.2 31.0 312 11-354 97-421 (441)
93 COG4581 Superfamily II RNA hel 100.0 1.7E-32 3.7E-37 268.8 26.1 321 7-346 116-534 (1041)
94 KOG0951 RNA helicase BRR2, DEA 100.0 4.1E-32 9E-37 262.9 26.9 341 5-355 303-708 (1674)
95 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.3E-31 5.1E-36 269.6 32.8 375 16-420 72-497 (1283)
96 PRK09694 helicase Cas3; Provis 100.0 4.3E-31 9.3E-36 261.5 30.2 313 9-338 284-664 (878)
97 PRK11448 hsdR type I restricti 100.0 5.6E-31 1.2E-35 268.1 29.9 320 10-347 412-813 (1123)
98 PLN03142 Probable chromatin-re 100.0 9.2E-31 2E-35 261.6 30.6 316 11-348 169-596 (1033)
99 KOG0349 Putative DEAD-box RNA 100.0 5.1E-32 1.1E-36 235.9 18.0 294 64-357 288-623 (725)
100 PRK12326 preprotein translocas 100.0 5.3E-30 1.1E-34 242.1 30.2 368 11-403 78-601 (764)
101 PRK12900 secA preprotein trans 100.0 1E-30 2.2E-35 253.7 25.6 370 12-403 137-769 (1025)
102 PRK13103 secA preprotein trans 100.0 9E-30 2E-34 246.4 27.1 365 12-398 81-644 (913)
103 cd00268 DEADc DEAD-box helicas 100.0 2.8E-29 6E-34 214.2 22.2 191 2-196 12-202 (203)
104 PRK12903 secA preprotein trans 100.0 3E-28 6.4E-33 233.4 27.1 364 12-400 77-592 (925)
105 KOG0385 Chromatin remodeling c 100.0 2.3E-28 5E-33 227.0 24.8 321 11-355 167-603 (971)
106 KOG0950 DNA polymerase theta/e 100.0 1.4E-28 3E-33 234.4 21.0 335 5-357 217-619 (1008)
107 COG1198 PriA Primosomal protei 100.0 1.3E-27 2.7E-32 230.0 27.1 318 10-355 197-609 (730)
108 CHL00122 secA preprotein trans 100.0 3.7E-27 8.1E-32 227.3 27.8 359 12-393 75-678 (870)
109 PRK12902 secA preprotein trans 100.0 2.5E-26 5.5E-31 221.1 28.4 371 11-403 83-746 (939)
110 COG1643 HrpA HrpA-like helicas 100.0 4.3E-26 9.4E-31 222.7 28.3 383 13-421 52-479 (845)
111 PF00270 DEAD: DEAD/DEAH box h 100.0 5.3E-27 1.1E-31 194.3 18.7 164 13-183 1-167 (169)
112 COG4096 HsdR Type I site-speci 100.0 1.4E-26 3.1E-31 218.6 23.8 305 7-336 161-525 (875)
113 KOG0922 DEAH-box RNA helicase 99.9 1.4E-25 3.1E-30 207.0 25.6 311 15-352 55-393 (674)
114 TIGR00348 hsdR type I site-spe 99.9 4E-25 8.7E-30 217.6 29.3 303 12-336 239-634 (667)
115 PRK12901 secA preprotein trans 99.9 3.1E-25 6.7E-30 215.8 24.5 370 12-403 168-799 (1112)
116 COG1110 Reverse gyrase [DNA re 99.9 2.2E-24 4.8E-29 207.2 28.2 280 8-320 80-416 (1187)
117 COG1203 CRISPR-associated heli 99.9 2.9E-25 6.2E-30 220.9 22.9 324 11-349 195-550 (733)
118 KOG0387 Transcription-coupled 99.9 1.7E-24 3.7E-29 202.4 24.0 315 9-347 203-654 (923)
119 KOG0923 mRNA splicing factor A 99.9 3.1E-24 6.7E-29 196.7 24.3 314 12-351 266-608 (902)
120 KOG0392 SNF2 family DNA-depend 99.9 9.3E-25 2E-29 212.0 20.5 329 11-349 975-1452(1549)
121 KOG0384 Chromodomain-helicase 99.9 3.2E-24 6.9E-29 209.0 21.9 324 8-346 367-806 (1373)
122 TIGR00631 uvrb excinuclease AB 99.9 5.5E-23 1.2E-27 200.1 29.5 134 218-359 425-563 (655)
123 KOG1000 Chromatin remodeling p 99.9 1.3E-24 2.9E-29 192.8 15.8 336 7-361 194-617 (689)
124 TIGR01407 dinG_rel DnaQ family 99.9 1.9E-22 4.2E-27 205.0 30.8 339 6-362 241-829 (850)
125 COG0556 UvrB Helicase subunit 99.9 4.8E-23 1E-27 185.1 22.1 175 168-357 386-565 (663)
126 KOG0390 DNA repair protein, SN 99.9 7.4E-22 1.6E-26 189.3 30.7 332 9-348 236-704 (776)
127 KOG0920 ATP-dependent RNA heli 99.9 1.1E-22 2.4E-27 198.2 24.6 318 13-350 175-545 (924)
128 KOG0949 Predicted helicase, DE 99.9 1.1E-22 2.3E-27 194.0 21.0 159 11-179 511-672 (1330)
129 KOG0389 SNF2 family DNA-depend 99.9 1.7E-22 3.7E-27 188.9 22.0 326 6-352 395-889 (941)
130 KOG0924 mRNA splicing factor A 99.9 1.3E-22 2.8E-27 186.7 20.5 310 13-349 358-697 (1042)
131 COG4889 Predicted helicase [Ge 99.9 5.5E-24 1.2E-28 200.5 10.8 330 5-346 155-583 (1518)
132 KOG1123 RNA polymerase II tran 99.9 4.8E-23 1E-27 183.3 15.7 316 4-353 295-657 (776)
133 smart00487 DEXDc DEAD-like hel 99.9 7.4E-22 1.6E-26 168.3 22.1 189 5-200 2-192 (201)
134 KOG0926 DEAH-box RNA helicase 99.9 2.8E-21 6.1E-26 180.9 24.0 384 17-421 262-796 (1172)
135 PRK05298 excinuclease ABC subu 99.9 9.6E-21 2.1E-25 186.1 27.5 125 219-351 430-559 (652)
136 COG0653 SecA Preprotein transl 99.9 6E-21 1.3E-25 183.7 24.1 373 10-404 77-604 (822)
137 PRK07246 bifunctional ATP-depe 99.9 2.4E-19 5.3E-24 179.8 30.0 329 11-363 245-799 (820)
138 PRK08074 bifunctional ATP-depe 99.9 5.3E-19 1.1E-23 180.7 30.4 120 243-362 753-908 (928)
139 KOG0391 SNF2 family DNA-depend 99.8 1.6E-19 3.5E-24 174.8 21.6 119 240-358 1274-1394(1958)
140 KOG0925 mRNA splicing factor A 99.8 1.8E-19 3.9E-24 160.2 19.8 303 15-349 51-387 (699)
141 KOG4150 Predicted ATP-dependen 99.8 5.8E-20 1.3E-24 166.3 14.2 331 6-353 281-646 (1034)
142 KOG0388 SNF2 family DNA-depend 99.8 1.9E-19 4E-24 166.7 17.4 109 240-348 1042-1151(1185)
143 KOG0386 Chromatin remodeling c 99.8 4.9E-20 1.1E-24 176.8 13.2 335 10-357 393-844 (1157)
144 TIGR03117 cas_csf4 CRISPR-asso 99.8 3.9E-17 8.4E-22 156.9 31.7 105 243-349 471-616 (636)
145 KOG0953 Mitochondrial RNA heli 99.8 3.4E-19 7.4E-24 161.0 16.0 268 27-347 192-475 (700)
146 cd00046 DEXDc DEAD-like helica 99.8 2E-18 4.4E-23 138.5 17.4 144 27-178 1-144 (144)
147 KOG1002 Nucleotide excision re 99.8 1.1E-17 2.3E-22 149.3 22.6 104 243-346 639-746 (791)
148 KOG4439 RNA polymerase II tran 99.8 2.1E-18 4.5E-23 159.9 18.6 118 241-358 745-865 (901)
149 PF04851 ResIII: Type III rest 99.8 8.6E-20 1.9E-24 153.3 8.9 153 11-179 3-183 (184)
150 cd00079 HELICc Helicase superf 99.8 1.1E-18 2.4E-23 137.8 14.2 105 241-345 27-131 (131)
151 COG1199 DinG Rad3-related DNA 99.8 1.9E-17 4.1E-22 165.6 25.4 74 5-85 9-86 (654)
152 PF00271 Helicase_C: Helicase 99.8 2.8E-19 6.1E-24 126.8 8.5 78 260-337 1-78 (78)
153 PRK14873 primosome assembly pr 99.8 5.1E-17 1.1E-21 158.1 24.6 282 30-350 164-540 (665)
154 PRK11747 dinG ATP-dependent DN 99.8 4.2E-16 9.1E-21 154.6 30.9 116 244-362 536-689 (697)
155 KOG0951 RNA helicase BRR2, DEA 99.7 5.5E-16 1.2E-20 152.2 21.4 318 11-356 1143-1501(1674)
156 TIGR00604 rad3 DNA repair heli 99.7 3.9E-15 8.6E-20 149.0 27.8 75 6-85 5-83 (705)
157 smart00490 HELICc helicase sup 99.7 2.2E-16 4.8E-21 113.4 8.7 81 257-337 2-82 (82)
158 KOG1015 Transcription regulato 99.7 8.8E-15 1.9E-19 140.0 19.1 112 242-353 1142-1279(1567)
159 COG0553 HepA Superfamily II DN 99.6 2E-14 4.3E-19 149.9 20.7 331 9-357 336-828 (866)
160 TIGR02562 cas3_yersinia CRISPR 99.6 4E-14 8.7E-19 139.8 21.0 316 12-338 409-881 (1110)
161 PF06862 DUF1253: Protein of u 99.6 1.9E-12 4.2E-17 118.6 26.7 298 61-358 36-424 (442)
162 COG0610 Type I site-specific r 99.6 1E-12 2.2E-17 134.1 27.6 294 27-337 274-637 (962)
163 PF02399 Herpes_ori_bp: Origin 99.6 3.1E-13 6.8E-18 130.2 19.8 289 28-348 51-387 (824)
164 PF07652 Flavi_DEAD: Flaviviru 99.6 4.2E-14 9.2E-19 107.6 10.2 135 26-182 4-140 (148)
165 PF00176 SNF2_N: SNF2 family N 99.5 1.5E-13 3.3E-18 124.8 12.3 157 15-181 1-175 (299)
166 PF07517 SecA_DEAD: SecA DEAD- 99.5 1.6E-12 3.5E-17 112.1 15.3 127 11-150 77-210 (266)
167 PRK15483 type III restriction- 99.4 9.2E-10 2E-14 109.8 28.0 72 292-363 501-582 (986)
168 KOG1016 Predicted DNA helicase 99.4 1.1E-10 2.5E-15 110.3 19.8 120 240-359 717-857 (1387)
169 smart00489 DEXDc3 DEAD-like he 99.3 5E-11 1.1E-15 106.0 14.1 76 7-85 5-84 (289)
170 smart00488 DEXDc2 DEAD-like he 99.3 5E-11 1.1E-15 106.0 14.1 76 7-85 5-84 (289)
171 KOG2340 Uncharacterized conser 99.3 1.1E-10 2.3E-15 106.0 14.8 350 6-357 211-676 (698)
172 COG3587 Restriction endonuclea 99.1 1.3E-08 2.9E-13 98.0 19.1 74 291-364 482-568 (985)
173 KOG0921 Dosage compensation co 99.0 1.5E-09 3.4E-14 104.4 11.6 324 15-351 382-776 (1282)
174 KOG1001 Helicase-like transcri 99.0 8.5E-10 1.8E-14 107.5 9.9 103 243-345 540-644 (674)
175 KOG0952 DNA/RNA helicase MER3/ 99.0 1.3E-10 2.8E-15 113.6 3.3 264 13-293 929-1206(1230)
176 KOG1133 Helicase of the DEAD s 99.0 1E-06 2.2E-11 83.5 26.1 101 243-346 630-777 (821)
177 COG3421 Uncharacterized protei 98.9 8.8E-09 1.9E-13 95.4 10.8 143 30-179 1-166 (812)
178 PF13872 AAA_34: P-loop contai 98.9 3.5E-08 7.5E-13 85.6 11.6 157 11-181 37-223 (303)
179 TIGR00596 rad1 DNA repair prot 98.8 7.4E-08 1.6E-12 96.3 14.7 69 110-178 4-72 (814)
180 PF13086 AAA_11: AAA domain; P 98.8 1.1E-08 2.3E-13 89.4 7.5 73 11-84 1-75 (236)
181 PF13604 AAA_30: AAA domain; P 98.8 4E-08 8.7E-13 82.4 10.1 123 11-177 1-130 (196)
182 PF02562 PhoH: PhoH-like prote 98.7 3.3E-08 7.2E-13 82.0 7.6 142 10-177 3-155 (205)
183 PF13307 Helicase_C_2: Helicas 98.6 8.1E-08 1.7E-12 78.4 7.3 104 243-348 10-149 (167)
184 PF12340 DUF3638: Protein of u 98.6 7.6E-07 1.6E-11 74.6 11.0 109 11-127 23-144 (229)
185 KOG1803 DNA helicase [Replicat 98.5 3E-07 6.6E-12 85.8 8.8 65 11-83 185-250 (649)
186 PRK10536 hypothetical protein; 98.5 3.5E-06 7.6E-11 72.1 14.5 147 6-174 54-209 (262)
187 KOG1802 RNA helicase nonsense 98.5 2.9E-07 6.2E-12 86.6 8.6 84 4-99 403-486 (935)
188 PF09848 DUF2075: Uncharacteri 98.4 9.2E-07 2E-11 81.7 8.8 96 28-152 3-98 (352)
189 KOG1131 RNA polymerase II tran 98.4 0.00027 5.9E-09 65.3 23.5 77 6-86 11-91 (755)
190 TIGR00376 DNA helicase, putati 98.4 5.7E-06 1.2E-10 81.9 13.6 67 10-84 156-223 (637)
191 TIGR01447 recD exodeoxyribonuc 98.3 1.1E-05 2.5E-10 78.7 14.1 142 14-177 148-295 (586)
192 PF13245 AAA_19: Part of AAA d 98.3 3.2E-06 6.9E-11 58.4 7.5 60 19-82 2-62 (76)
193 PRK10875 recD exonuclease V su 98.3 9.1E-06 2E-10 79.6 13.1 142 13-177 154-301 (615)
194 TIGR01448 recD_rel helicase, p 98.3 6.4E-06 1.4E-10 82.8 11.6 126 10-177 322-452 (720)
195 KOG1513 Nuclear helicase MOP-3 98.2 1.3E-05 2.8E-10 77.2 11.8 159 9-178 262-454 (1300)
196 COG1875 NYN ribonuclease and A 98.2 8.7E-06 1.9E-10 71.9 8.9 146 6-176 223-386 (436)
197 KOG1132 Helicase of the DEAD s 98.1 2.9E-05 6.3E-10 76.0 10.8 76 11-86 21-134 (945)
198 smart00492 HELICc3 helicase su 98.1 4.1E-05 8.8E-10 60.2 9.5 76 271-346 26-135 (141)
199 TIGR02768 TraA_Ti Ti-type conj 98.0 7.1E-05 1.5E-09 75.7 13.1 122 10-175 351-474 (744)
200 PF13401 AAA_22: AAA domain; P 98.0 0.00011 2.5E-09 57.4 11.6 123 25-178 3-125 (131)
201 PRK13889 conjugal transfer rel 98.0 8.5E-05 1.8E-09 76.4 13.0 123 11-177 346-470 (988)
202 smart00491 HELICc2 helicase su 98.0 4.8E-05 1E-09 59.9 8.8 92 255-346 4-136 (142)
203 PRK06526 transposase; Provisio 98.0 2.4E-05 5.2E-10 68.2 7.7 42 21-70 93-134 (254)
204 PRK08181 transposase; Validate 97.9 0.00013 2.7E-09 64.1 11.4 60 10-78 86-149 (269)
205 KOG0298 DEAD box-containing he 97.9 3.7E-05 8E-10 78.0 8.2 153 26-184 374-556 (1394)
206 KOG1805 DNA replication helica 97.9 5.9E-05 1.3E-09 74.7 9.4 124 10-150 668-809 (1100)
207 PRK04296 thymidine kinase; Pro 97.9 4.1E-05 8.8E-10 64.0 7.2 36 27-70 3-38 (190)
208 PF00580 UvrD-helicase: UvrD/R 97.8 5.9E-05 1.3E-09 69.0 7.9 123 12-147 1-125 (315)
209 PRK13826 Dtr system oriT relax 97.8 0.0003 6.5E-09 72.9 12.6 124 10-177 380-505 (1102)
210 cd00009 AAA The AAA+ (ATPases 97.6 0.00062 1.3E-08 54.2 10.4 25 26-51 19-43 (151)
211 PF13871 Helicase_C_4: Helicas 97.6 0.00021 4.6E-09 62.2 7.6 57 283-339 52-116 (278)
212 KOG0989 Replication factor C, 97.6 0.00026 5.7E-09 61.3 7.4 46 133-179 125-170 (346)
213 PRK14974 cell division protein 97.6 0.0016 3.5E-08 59.0 12.7 131 28-190 142-276 (336)
214 TIGR02760 TraI_TIGR conjugativ 97.5 0.0092 2E-07 66.9 20.7 135 11-177 429-566 (1960)
215 PF00448 SRP54: SRP54-type pro 97.5 0.00088 1.9E-08 56.1 9.9 54 136-189 82-136 (196)
216 PHA02533 17 large terminase pr 97.5 0.0012 2.5E-08 64.1 11.4 149 11-179 59-210 (534)
217 smart00382 AAA ATPases associa 97.5 0.00037 7.9E-09 55.2 6.6 43 26-76 2-44 (148)
218 PRK12723 flagellar biosynthesi 97.4 0.003 6.4E-08 58.6 12.9 130 27-189 175-309 (388)
219 PRK14722 flhF flagellar biosyn 97.4 0.0016 3.5E-08 59.7 10.9 131 26-189 137-269 (374)
220 PRK08116 hypothetical protein; 97.4 0.0018 4E-08 57.2 10.7 41 28-77 116-156 (268)
221 PRK12377 putative replication 97.4 0.0024 5.2E-08 55.4 11.1 58 13-79 80-145 (248)
222 COG1484 DnaC DNA replication p 97.4 0.0014 3.1E-08 57.3 9.6 72 3-83 75-153 (254)
223 PRK11889 flhF flagellar biosyn 97.4 0.0043 9.4E-08 56.8 12.7 128 27-189 242-374 (436)
224 KOG0383 Predicted helicase [Ge 97.4 9E-06 2E-10 79.0 -4.6 65 240-305 629-696 (696)
225 PRK11054 helD DNA helicase IV; 97.3 0.0018 3.8E-08 64.9 10.2 88 10-128 195-282 (684)
226 PF05970 PIF1: PIF1-like helic 97.3 0.00063 1.4E-08 63.2 6.4 59 11-77 1-65 (364)
227 PRK10919 ATP-dependent DNA hel 97.2 0.0017 3.8E-08 65.3 9.9 71 11-87 2-72 (672)
228 PRK07952 DNA replication prote 97.2 0.006 1.3E-07 52.8 11.9 49 12-68 77-133 (244)
229 KOG0701 dsRNA-specific nucleas 97.2 0.00033 7E-09 74.3 4.8 93 245-337 295-399 (1606)
230 PRK05703 flhF flagellar biosyn 97.2 0.0071 1.5E-07 57.1 12.9 129 26-189 221-354 (424)
231 cd01120 RecA-like_NTPases RecA 97.2 0.0041 8.8E-08 50.5 10.1 40 29-76 2-41 (165)
232 TIGR01075 uvrD DNA helicase II 97.2 0.0019 4.2E-08 65.8 9.6 72 10-87 3-74 (715)
233 PRK05642 DNA replication initi 97.2 0.0026 5.7E-08 55.1 9.1 43 137-179 97-140 (234)
234 PRK08727 hypothetical protein; 97.2 0.0028 6E-08 54.9 9.2 35 27-69 42-76 (233)
235 TIGR02785 addA_Gpos recombinat 97.2 0.0019 4.1E-08 69.5 9.8 124 11-148 1-126 (1232)
236 COG1419 FlhF Flagellar GTP-bin 97.2 0.0079 1.7E-07 55.0 12.1 131 26-189 203-335 (407)
237 PRK11773 uvrD DNA-dependent he 97.2 0.002 4.3E-08 65.7 9.4 73 9-87 7-79 (721)
238 PRK14712 conjugal transfer nic 97.2 0.0041 8.8E-08 67.1 11.9 64 11-78 835-900 (1623)
239 cd01124 KaiC KaiC is a circadi 97.1 0.0056 1.2E-07 51.1 10.7 48 29-85 2-49 (187)
240 PF03354 Terminase_1: Phage Te 97.1 0.0015 3.3E-08 63.1 8.0 148 14-174 1-159 (477)
241 PRK06835 DNA replication prote 97.1 0.0023 5.1E-08 58.0 8.6 59 11-78 160-226 (329)
242 PRK05707 DNA polymerase III su 97.1 0.0039 8.4E-08 56.8 10.0 42 11-53 3-48 (328)
243 PF00004 AAA: ATPase family as 97.1 0.0088 1.9E-07 46.5 10.8 15 29-43 1-15 (132)
244 PRK06921 hypothetical protein; 97.1 0.01 2.2E-07 52.4 11.9 44 26-77 117-160 (266)
245 PTZ00112 origin recognition co 97.0 0.013 2.8E-07 59.0 13.2 23 29-52 784-806 (1164)
246 COG2256 MGS1 ATPase related to 97.0 0.0031 6.6E-08 57.1 7.8 46 27-83 49-94 (436)
247 PRK06893 DNA replication initi 97.0 0.0027 5.9E-08 54.8 7.5 46 136-181 90-137 (229)
248 TIGR01074 rep ATP-dependent DN 97.0 0.0051 1.1E-07 62.4 10.5 71 11-87 1-71 (664)
249 PRK13709 conjugal transfer nic 97.0 0.0095 2.1E-07 65.2 12.8 127 10-177 966-1099(1747)
250 PRK00149 dnaA chromosomal repl 97.0 0.008 1.7E-07 57.7 11.2 46 27-79 149-194 (450)
251 PRK08769 DNA polymerase III su 97.0 0.012 2.7E-07 53.0 11.5 44 9-53 2-52 (319)
252 COG1435 Tdk Thymidine kinase [ 96.9 0.0079 1.7E-07 49.0 9.0 103 27-163 5-107 (201)
253 PRK08084 DNA replication initi 96.9 0.0067 1.5E-07 52.6 9.4 36 27-70 46-81 (235)
254 PLN03025 replication factor C 96.9 0.011 2.4E-07 53.9 11.3 37 137-174 99-135 (319)
255 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0068 1.5E-07 52.3 9.5 25 26-51 38-62 (226)
256 PRK09183 transposase/IS protei 96.9 0.0039 8.5E-08 54.8 7.6 46 22-76 98-143 (259)
257 PRK12422 chromosomal replicati 96.9 0.0051 1.1E-07 58.5 8.9 107 27-183 142-250 (445)
258 TIGR00362 DnaA chromosomal rep 96.9 0.0099 2.1E-07 56.3 10.8 42 28-76 138-179 (405)
259 PHA02544 44 clamp loader, smal 96.9 0.0066 1.4E-07 55.5 9.3 39 137-175 100-138 (316)
260 PRK12402 replication factor C 96.9 0.0067 1.4E-07 56.0 9.4 40 136-176 124-163 (337)
261 PHA03333 putative ATPase subun 96.8 0.035 7.5E-07 54.4 13.7 155 6-178 164-332 (752)
262 COG3973 Superfamily I DNA and 96.8 0.0079 1.7E-07 57.3 9.1 70 15-86 213-284 (747)
263 PF00308 Bac_DnaA: Bacterial d 96.8 0.0077 1.7E-07 51.6 8.5 107 28-182 36-144 (219)
264 PRK14088 dnaA chromosomal repl 96.8 0.02 4.3E-07 54.6 12.0 38 27-70 131-168 (440)
265 PRK08903 DnaA regulatory inact 96.8 0.0092 2E-07 51.6 9.0 42 137-179 90-132 (227)
266 PRK14087 dnaA chromosomal repl 96.8 0.0085 1.8E-07 57.2 9.4 50 27-83 142-191 (450)
267 TIGR02760 TraI_TIGR conjugativ 96.7 0.013 2.7E-07 65.9 11.7 62 10-78 1018-1084(1960)
268 PRK14086 dnaA chromosomal repl 96.7 0.0055 1.2E-07 59.7 7.8 107 28-182 316-424 (617)
269 TIGR01073 pcrA ATP-dependent D 96.7 0.0084 1.8E-07 61.4 9.7 72 10-87 3-74 (726)
270 PF05876 Terminase_GpA: Phage 96.7 0.005 1.1E-07 60.4 7.7 126 11-150 16-147 (557)
271 cd01122 GP4d_helicase GP4d_hel 96.7 0.013 2.7E-07 52.3 9.6 75 3-85 7-81 (271)
272 PF13177 DNA_pol3_delta2: DNA 96.7 0.018 3.9E-07 46.7 9.6 43 136-179 101-143 (162)
273 PRK06731 flhF flagellar biosyn 96.6 0.055 1.2E-06 47.6 12.9 128 27-189 76-208 (270)
274 PRK04195 replication factor C 96.6 0.018 4E-07 55.8 10.7 18 26-43 39-56 (482)
275 PTZ00293 thymidine kinase; Pro 96.6 0.014 3.1E-07 48.8 8.4 39 26-72 4-42 (211)
276 PF05496 RuvB_N: Holliday junc 96.6 0.0043 9.2E-08 52.1 5.2 17 28-44 52-68 (233)
277 COG4626 Phage terminase-like p 96.6 0.018 3.8E-07 54.8 9.8 147 11-176 61-223 (546)
278 COG0593 DnaA ATPase involved i 96.6 0.014 3E-07 54.0 8.9 47 137-183 175-223 (408)
279 TIGR03015 pepcterm_ATPase puta 96.6 0.025 5.4E-07 50.3 10.6 32 12-43 24-60 (269)
280 PF05621 TniB: Bacterial TniB 96.6 0.016 3.6E-07 51.0 8.9 120 27-178 62-189 (302)
281 PRK14964 DNA polymerase III su 96.5 0.018 4E-07 55.0 9.9 19 27-45 36-54 (491)
282 PRK14958 DNA polymerase III su 96.5 0.024 5.3E-07 54.9 10.8 39 136-175 118-156 (509)
283 PRK13833 conjugal transfer pro 96.5 0.0075 1.6E-07 54.4 6.8 57 12-74 129-186 (323)
284 PRK07003 DNA polymerase III su 96.5 0.023 4.9E-07 56.6 10.4 39 136-175 118-156 (830)
285 PRK00771 signal recognition pa 96.5 0.087 1.9E-06 49.9 13.9 52 138-189 176-228 (437)
286 PRK06964 DNA polymerase III su 96.5 0.027 5.9E-07 51.4 10.2 41 12-53 2-47 (342)
287 PF05127 Helicase_RecD: Helica 96.5 0.0023 5.1E-08 51.9 3.0 122 30-179 1-124 (177)
288 TIGR01547 phage_term_2 phage t 96.4 0.019 4.1E-07 54.3 9.5 145 28-190 3-152 (396)
289 PRK09111 DNA polymerase III su 96.4 0.021 4.5E-07 56.4 9.8 40 135-175 130-169 (598)
290 PRK00411 cdc6 cell division co 96.4 0.028 6.1E-07 53.2 10.5 26 27-53 56-81 (394)
291 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.015 3.2E-07 50.6 7.8 52 25-85 20-71 (237)
292 PF13173 AAA_14: AAA domain 96.4 0.047 1E-06 42.3 9.9 38 137-178 61-98 (128)
293 PF01695 IstB_IS21: IstB-like 96.4 0.0065 1.4E-07 50.0 5.3 63 6-77 21-89 (178)
294 PRK14723 flhF flagellar biosyn 96.4 0.042 9.1E-07 55.2 11.5 129 27-189 186-317 (767)
295 TIGR03499 FlhF flagellar biosy 96.4 0.02 4.3E-07 51.2 8.5 21 27-47 195-215 (282)
296 TIGR02881 spore_V_K stage V sp 96.3 0.018 3.8E-07 51.0 7.8 18 27-44 43-60 (261)
297 PRK08533 flagellar accessory p 96.3 0.06 1.3E-06 46.5 10.9 53 24-85 22-74 (230)
298 PRK12727 flagellar biosynthesi 96.3 0.06 1.3E-06 51.6 11.6 24 25-48 349-372 (559)
299 PRK13342 recombination factor 96.3 0.046 1E-06 51.9 11.1 17 28-44 38-54 (413)
300 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.044 9.5E-07 43.8 9.1 136 28-187 4-147 (159)
301 COG4962 CpaF Flp pilus assembl 96.3 0.0075 1.6E-07 53.8 5.2 62 6-76 152-214 (355)
302 PRK13341 recombination factor 96.3 0.041 8.8E-07 55.6 10.9 40 137-181 109-148 (725)
303 cd01121 Sms Sms (bacterial rad 96.2 0.055 1.2E-06 50.2 10.9 50 27-85 83-132 (372)
304 COG1474 CDC6 Cdc6-related prot 96.2 0.14 3E-06 47.5 13.2 41 13-54 22-69 (366)
305 PRK14961 DNA polymerase III su 96.2 0.043 9.3E-07 51.1 10.1 22 29-51 41-62 (363)
306 PRK11823 DNA repair protein Ra 96.2 0.037 8E-07 52.9 9.8 51 26-85 80-130 (446)
307 TIGR01425 SRP54_euk signal rec 96.2 0.11 2.4E-06 48.8 12.7 53 137-189 182-235 (429)
308 TIGR02782 TrbB_P P-type conjug 96.2 0.018 3.9E-07 51.8 7.3 57 12-74 117-174 (299)
309 PRK14956 DNA polymerase III su 96.2 0.019 4.2E-07 54.4 7.6 22 29-51 43-64 (484)
310 PF14617 CMS1: U3-containing 9 96.2 0.021 4.5E-07 49.3 7.2 86 61-148 125-212 (252)
311 PRK14960 DNA polymerase III su 96.1 0.052 1.1E-06 53.4 10.6 39 136-175 117-155 (702)
312 TIGR02928 orc1/cdc6 family rep 96.1 0.033 7.1E-07 52.1 9.2 25 27-52 41-65 (365)
313 PRK06871 DNA polymerase III su 96.1 0.056 1.2E-06 49.0 10.1 41 12-53 3-50 (325)
314 KOG0991 Replication factor C, 96.1 0.014 3.1E-07 48.8 5.7 43 135-178 111-153 (333)
315 PRK05986 cob(I)alamin adenolsy 96.1 0.024 5.3E-07 46.6 7.1 145 25-187 21-167 (191)
316 PRK14962 DNA polymerase III su 96.1 0.032 6.9E-07 53.5 9.0 22 29-51 39-60 (472)
317 PRK13894 conjugal transfer ATP 96.1 0.015 3.2E-07 52.7 6.5 57 12-74 133-190 (319)
318 PRK12323 DNA polymerase III su 96.1 0.06 1.3E-06 52.9 10.8 42 136-178 123-164 (700)
319 cd00984 DnaB_C DnaB helicase C 96.1 0.047 1E-06 47.7 9.4 41 23-70 10-50 (242)
320 PRK08691 DNA polymerase III su 96.1 0.064 1.4E-06 53.2 10.9 40 135-175 117-156 (709)
321 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.077 1.7E-06 45.9 10.6 51 25-84 19-69 (229)
322 PRK06904 replicative DNA helic 96.1 0.15 3.3E-06 49.0 13.3 118 23-151 218-348 (472)
323 PRK10917 ATP-dependent DNA hel 96.0 0.023 5E-07 57.5 8.1 77 242-318 310-391 (681)
324 KOG0739 AAA+-type ATPase [Post 96.0 0.12 2.7E-06 45.1 11.1 54 21-86 156-214 (439)
325 PRK08939 primosomal protein Dn 96.0 0.027 5.8E-07 50.8 7.4 27 26-53 156-182 (306)
326 PHA03368 DNA packaging termina 96.0 0.059 1.3E-06 52.7 9.9 134 27-180 255-392 (738)
327 PRK08699 DNA polymerase III su 96.0 0.085 1.9E-06 48.0 10.7 41 12-53 2-47 (325)
328 PRK07764 DNA polymerase III su 96.0 0.042 9.1E-07 56.3 9.5 39 136-175 119-157 (824)
329 PRK06620 hypothetical protein; 95.9 0.02 4.3E-07 48.8 6.1 17 27-43 45-61 (214)
330 PRK06067 flagellar accessory p 95.9 0.08 1.7E-06 46.0 10.1 51 26-85 25-75 (234)
331 PRK06090 DNA polymerase III su 95.9 0.079 1.7E-06 47.9 10.1 42 11-53 3-51 (319)
332 COG2804 PulE Type II secretory 95.9 0.017 3.7E-07 54.3 6.0 41 12-53 242-284 (500)
333 TIGR00064 ftsY signal recognit 95.9 0.23 5E-06 44.0 13.0 55 136-190 153-214 (272)
334 CHL00181 cbbX CbbX; Provisiona 95.9 0.039 8.5E-07 49.3 8.2 19 27-45 60-78 (287)
335 PRK14952 DNA polymerase III su 95.9 0.061 1.3E-06 52.9 10.0 40 135-175 116-155 (584)
336 PRK06995 flhF flagellar biosyn 95.9 0.07 1.5E-06 51.0 10.1 25 26-50 256-280 (484)
337 PRK08840 replicative DNA helic 95.9 0.15 3.2E-06 48.9 12.4 132 8-150 199-342 (464)
338 PRK00440 rfc replication facto 95.9 0.14 3.1E-06 46.8 12.0 38 137-175 102-139 (319)
339 PHA00350 putative assembly pro 95.9 0.092 2E-06 48.7 10.4 43 137-179 81-146 (399)
340 PF03796 DnaB_C: DnaB-like hel 95.8 0.042 9.1E-07 48.6 8.1 143 24-178 17-180 (259)
341 TIGR03600 phage_DnaB phage rep 95.8 0.079 1.7E-06 50.5 10.4 118 23-151 191-319 (421)
342 COG3972 Superfamily I DNA and 95.8 0.031 6.7E-07 52.1 7.1 66 14-86 165-230 (660)
343 PRK12726 flagellar biosynthesi 95.8 0.14 2.9E-06 47.2 11.1 119 26-179 206-328 (407)
344 PRK08006 replicative DNA helic 95.8 0.2 4.4E-06 48.2 13.0 116 24-150 222-349 (471)
345 PRK12724 flagellar biosynthesi 95.8 0.15 3.2E-06 47.6 11.5 54 136-189 298-356 (432)
346 PRK14957 DNA polymerase III su 95.8 0.077 1.7E-06 51.7 10.1 40 135-175 117-156 (546)
347 COG0470 HolB ATPase involved i 95.8 0.054 1.2E-06 49.7 8.9 39 136-175 108-146 (325)
348 PRK14721 flhF flagellar biosyn 95.8 0.13 2.8E-06 48.4 11.2 131 26-189 191-323 (420)
349 PRK09112 DNA polymerase III su 95.8 0.058 1.2E-06 49.7 8.9 42 135-177 139-180 (351)
350 PRK14951 DNA polymerase III su 95.8 0.073 1.6E-06 52.6 10.0 23 29-52 41-63 (618)
351 PRK07471 DNA polymerase III su 95.8 0.064 1.4E-06 49.7 9.1 149 15-178 23-181 (365)
352 COG1444 Predicted P-loop ATPas 95.8 0.11 2.3E-06 51.9 11.1 141 11-178 214-356 (758)
353 PRK05580 primosome assembly pr 95.8 0.13 2.8E-06 52.1 12.0 77 242-319 190-267 (679)
354 PRK13851 type IV secretion sys 95.8 0.015 3.3E-07 53.1 4.9 43 23-74 159-201 (344)
355 PRK07993 DNA polymerase III su 95.8 0.08 1.7E-06 48.4 9.6 42 11-53 2-50 (334)
356 PRK07940 DNA polymerase III su 95.7 0.09 1.9E-06 49.2 10.0 41 136-177 116-156 (394)
357 COG2909 MalT ATP-dependent tra 95.7 0.042 9.1E-07 54.8 8.0 55 124-178 116-170 (894)
358 PF01443 Viral_helicase1: Vira 95.7 0.018 4E-07 50.0 5.2 20 29-49 1-20 (234)
359 TIGR00708 cobA cob(I)alamin ad 95.7 0.05 1.1E-06 44.1 7.2 52 136-187 96-149 (173)
360 PHA00729 NTP-binding motif con 95.7 0.088 1.9E-06 44.7 8.8 18 27-44 18-35 (226)
361 PRK11331 5-methylcytosine-spec 95.7 0.069 1.5E-06 50.2 8.9 33 12-44 180-212 (459)
362 TIGR02880 cbbX_cfxQ probable R 95.6 0.064 1.4E-06 48.0 8.4 18 27-44 59-76 (284)
363 PRK11034 clpA ATP-dependent Cl 95.6 0.14 3.1E-06 52.1 11.7 20 26-45 207-226 (758)
364 PRK14969 DNA polymerase III su 95.6 0.12 2.7E-06 50.4 10.9 40 135-175 117-156 (527)
365 PRK06645 DNA polymerase III su 95.6 0.087 1.9E-06 50.9 9.7 35 16-51 26-67 (507)
366 cd01129 PulE-GspE PulE/GspE Th 95.6 0.032 6.9E-07 49.2 6.2 39 12-51 64-104 (264)
367 PRK08506 replicative DNA helic 95.6 0.18 3.9E-06 48.7 11.7 114 25-150 191-315 (472)
368 PRK05973 replicative DNA helic 95.6 0.033 7.1E-07 47.9 6.0 64 12-85 51-114 (237)
369 PRK07004 replicative DNA helic 95.5 0.13 2.8E-06 49.4 10.6 115 25-150 212-337 (460)
370 PRK07994 DNA polymerase III su 95.5 0.16 3.4E-06 50.5 11.0 38 136-174 118-155 (647)
371 TIGR00959 ffh signal recogniti 95.5 0.63 1.4E-05 44.1 14.5 53 137-189 182-235 (428)
372 PRK14949 DNA polymerase III su 95.4 0.06 1.3E-06 54.8 8.2 38 136-174 118-155 (944)
373 KOG0738 AAA+-type ATPase [Post 95.4 0.083 1.8E-06 47.9 8.1 46 27-84 246-291 (491)
374 TIGR00643 recG ATP-dependent D 95.4 0.045 9.8E-07 55.0 7.2 78 242-319 284-366 (630)
375 PRK13900 type IV secretion sys 95.4 0.021 4.6E-07 52.0 4.4 42 24-74 158-199 (332)
376 PHA00012 I assembly protein 95.3 0.39 8.4E-06 42.9 11.7 54 136-190 80-139 (361)
377 PRK04841 transcriptional regul 95.3 0.13 2.7E-06 54.7 10.7 44 136-179 120-163 (903)
378 PRK05748 replicative DNA helic 95.3 0.28 6E-06 47.2 12.0 115 25-150 202-327 (448)
379 KOG2028 ATPase related to the 95.3 0.081 1.7E-06 47.5 7.5 16 28-43 164-179 (554)
380 TIGR00595 priA primosomal prot 95.3 0.16 3.5E-06 49.4 10.3 76 242-318 25-101 (505)
381 PRK14955 DNA polymerase III su 95.2 0.17 3.7E-06 47.8 10.2 24 28-52 40-63 (397)
382 PRK05563 DNA polymerase III su 95.2 0.13 2.9E-06 50.6 9.8 18 28-45 40-57 (559)
383 PRK10416 signal recognition pa 95.2 0.83 1.8E-05 41.5 14.1 55 136-190 195-256 (318)
384 cd03115 SRP The signal recogni 95.2 0.87 1.9E-05 37.3 13.3 17 29-45 3-19 (173)
385 PRK05595 replicative DNA helic 95.2 0.23 4.9E-06 47.7 11.1 116 24-151 199-325 (444)
386 TIGR00665 DnaB replicative DNA 95.2 0.31 6.7E-06 46.8 12.0 113 25-150 194-318 (434)
387 PRK14963 DNA polymerase III su 95.2 0.16 3.6E-06 49.2 10.0 23 29-52 39-61 (504)
388 PF01637 Arch_ATPase: Archaeal 95.1 0.034 7.4E-07 48.1 5.0 24 27-51 21-44 (234)
389 KOG0298 DEAD box-containing he 95.1 0.036 7.7E-07 57.4 5.4 113 240-357 1219-1332(1394)
390 TIGR02639 ClpA ATP-dependent C 95.1 0.2 4.3E-06 51.4 10.9 18 27-44 204-221 (731)
391 PRK05896 DNA polymerase III su 95.1 0.12 2.6E-06 50.7 8.7 24 28-52 40-63 (605)
392 COG1110 Reverse gyrase [DNA re 95.1 0.052 1.1E-06 55.2 6.4 78 241-318 124-211 (1187)
393 COG2805 PilT Tfp pilus assembl 95.1 0.051 1.1E-06 47.6 5.5 26 28-54 127-152 (353)
394 TIGR00678 holB DNA polymerase 95.1 0.17 3.8E-06 42.1 8.9 25 28-53 16-40 (188)
395 PRK14959 DNA polymerase III su 95.1 0.15 3.2E-06 50.3 9.4 23 28-51 40-62 (624)
396 cd01130 VirB11-like_ATPase Typ 95.1 0.053 1.2E-06 45.1 5.7 39 11-50 9-48 (186)
397 CHL00095 clpC Clp protease ATP 95.0 0.29 6.2E-06 51.0 12.0 20 26-45 200-219 (821)
398 PRK10867 signal recognition pa 95.0 0.55 1.2E-05 44.5 12.7 54 137-190 183-237 (433)
399 PRK08760 replicative DNA helic 95.0 0.36 7.7E-06 46.6 11.7 114 26-150 229-352 (476)
400 PRK14954 DNA polymerase III su 94.9 0.18 3.9E-06 50.1 9.7 23 28-51 40-62 (620)
401 PRK14965 DNA polymerase III su 94.9 0.38 8.2E-06 47.7 11.9 40 135-175 117-156 (576)
402 PRK10436 hypothetical protein; 94.9 0.054 1.2E-06 51.7 5.8 39 12-51 202-242 (462)
403 PRK14950 DNA polymerase III su 94.9 0.23 5E-06 49.4 10.4 23 29-52 41-63 (585)
404 TIGR00416 sms DNA repair prote 94.8 0.18 3.9E-06 48.3 9.1 50 27-85 95-144 (454)
405 PRK14948 DNA polymerase III su 94.8 0.22 4.7E-06 49.7 9.9 26 27-53 39-64 (620)
406 TIGR02688 conserved hypothetic 94.8 0.13 2.8E-06 47.8 7.7 29 21-49 204-232 (449)
407 PRK07133 DNA polymerase III su 94.8 0.25 5.3E-06 49.7 10.1 22 29-51 43-64 (725)
408 PF02572 CobA_CobO_BtuR: ATP:c 94.7 0.33 7.2E-06 39.4 9.1 142 28-187 5-148 (172)
409 TIGR00580 mfd transcription-re 94.7 0.1 2.2E-06 54.4 7.7 75 243-317 501-580 (926)
410 COG1219 ClpX ATP-dependent pro 94.7 0.026 5.6E-07 49.6 2.8 18 27-44 98-115 (408)
411 COG0552 FtsY Signal recognitio 94.7 0.97 2.1E-05 40.6 12.5 130 29-189 142-280 (340)
412 TIGR03345 VI_ClpV1 type VI sec 94.7 0.44 9.5E-06 49.6 12.1 24 27-51 209-232 (852)
413 PF03237 Terminase_6: Terminas 94.7 0.61 1.3E-05 43.6 12.5 147 30-193 1-154 (384)
414 KOG2036 Predicted P-loop ATPas 94.6 1.6 3.5E-05 43.0 14.6 134 13-179 255-412 (1011)
415 TIGR03346 chaperone_ClpB ATP-d 94.6 0.21 4.6E-06 52.1 9.9 24 27-51 195-218 (852)
416 COG1198 PriA Primosomal protei 94.6 0.2 4.4E-06 50.2 9.1 97 212-316 222-319 (730)
417 PF12846 AAA_10: AAA-like doma 94.6 0.053 1.2E-06 49.1 4.8 41 26-74 1-41 (304)
418 PRK14953 DNA polymerase III su 94.5 0.32 6.9E-06 47.1 10.1 17 29-45 41-57 (486)
419 PF00437 T2SE: Type II/IV secr 94.5 0.054 1.2E-06 48.2 4.7 42 25-74 126-167 (270)
420 cd01131 PilT Pilus retraction 94.5 0.064 1.4E-06 45.2 4.8 39 28-73 3-41 (198)
421 TIGR02655 circ_KaiC circadian 94.4 0.26 5.7E-06 47.8 9.4 51 26-85 263-313 (484)
422 TIGR00635 ruvB Holliday juncti 94.4 0.094 2E-06 47.6 6.1 18 27-44 31-48 (305)
423 PF05729 NACHT: NACHT domain 94.4 0.54 1.2E-05 37.9 10.1 25 28-53 2-26 (166)
424 COG2255 RuvB Holliday junction 94.4 0.12 2.5E-06 45.0 5.9 19 27-45 53-71 (332)
425 PRK14873 primosome assembly pr 94.4 0.29 6.3E-06 49.1 9.7 77 242-319 188-266 (665)
426 PRK10865 protein disaggregatio 94.4 0.23 4.9E-06 51.8 9.3 18 27-44 200-217 (857)
427 TIGR02533 type_II_gspE general 94.4 0.072 1.6E-06 51.4 5.3 39 12-51 226-266 (486)
428 PRK03992 proteasome-activating 94.3 0.16 3.4E-06 47.8 7.5 17 27-43 166-182 (389)
429 PRK06321 replicative DNA helic 94.3 0.98 2.1E-05 43.5 12.8 112 26-150 226-349 (472)
430 TIGR02640 gas_vesic_GvpN gas v 94.3 0.093 2E-06 46.4 5.5 28 17-44 12-39 (262)
431 PRK05636 replicative DNA helic 94.2 0.31 6.8E-06 47.3 9.3 113 26-150 265-388 (505)
432 PF06745 KaiC: KaiC; InterPro 94.2 0.09 2E-06 45.4 5.2 53 25-85 18-70 (226)
433 KOG1132 Helicase of the DEAD s 94.1 0.95 2.1E-05 45.7 12.3 76 245-321 564-656 (945)
434 PRK09087 hypothetical protein; 94.1 0.19 4.1E-06 43.2 6.9 40 139-180 89-129 (226)
435 PRK00080 ruvB Holliday junctio 94.1 0.13 2.9E-06 47.2 6.4 18 27-44 52-69 (328)
436 PRK07399 DNA polymerase III su 94.1 0.81 1.8E-05 41.5 11.2 42 135-178 122-163 (314)
437 PF06733 DEAD_2: DEAD_2; Inte 94.1 0.032 6.9E-07 45.9 2.0 42 110-151 116-159 (174)
438 PRK08451 DNA polymerase III su 94.0 0.19 4.2E-06 48.8 7.5 40 135-175 115-154 (535)
439 PRK09376 rho transcription ter 94.0 0.29 6.2E-06 45.2 8.1 28 25-53 168-195 (416)
440 TIGR02858 spore_III_AA stage I 94.0 0.73 1.6E-05 40.7 10.5 22 20-41 102-126 (270)
441 TIGR03689 pup_AAA proteasome A 94.0 0.26 5.7E-06 47.6 8.3 25 26-51 216-240 (512)
442 PRK10689 transcription-repair 94.0 0.19 4.1E-06 53.8 7.9 75 242-316 649-728 (1147)
443 TIGR02538 type_IV_pilB type IV 93.9 0.12 2.6E-06 51.1 6.1 39 12-51 300-340 (564)
444 cd01393 recA_like RecA is a b 93.9 0.18 4E-06 43.4 6.7 46 26-73 19-64 (226)
445 KOG0741 AAA+-type ATPase [Post 93.9 0.28 6E-06 46.5 7.8 35 28-72 540-574 (744)
446 PRK04328 hypothetical protein; 93.9 0.12 2.7E-06 45.2 5.5 52 25-85 22-73 (249)
447 TIGR02397 dnaX_nterm DNA polym 93.9 0.54 1.2E-05 43.7 10.1 24 28-52 38-61 (355)
448 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.18 3.8E-06 44.5 6.4 38 25-70 35-72 (259)
449 PRK09165 replicative DNA helic 93.8 1.1 2.3E-05 43.7 12.1 121 26-150 217-354 (497)
450 PHA03372 DNA packaging termina 93.8 1.2 2.7E-05 43.4 12.0 128 27-178 203-337 (668)
451 KOG0740 AAA+-type ATPase [Post 93.8 0.15 3.3E-06 47.4 6.0 41 27-79 187-227 (428)
452 KOG0742 AAA+-type ATPase [Post 93.7 0.2 4.4E-06 45.8 6.4 17 27-43 385-401 (630)
453 PRK14971 DNA polymerase III su 93.7 0.46 9.9E-06 47.4 9.6 41 134-175 118-158 (614)
454 KOG1806 DEAD box containing he 93.7 0.12 2.5E-06 52.6 5.3 72 8-85 735-806 (1320)
455 TIGR02525 plasmid_TraJ plasmid 93.7 0.13 2.9E-06 47.6 5.5 28 25-53 148-175 (372)
456 PRK07414 cob(I)yrinic acid a,c 93.7 0.46 1E-05 38.7 7.9 136 28-186 23-166 (178)
457 TIGR01420 pilT_fam pilus retra 93.6 0.12 2.6E-06 47.6 5.2 43 25-74 121-163 (343)
458 PRK06305 DNA polymerase III su 93.5 0.57 1.2E-05 44.9 9.7 24 28-52 41-64 (451)
459 COG0467 RAD55 RecA-superfamily 93.5 0.16 3.4E-06 44.9 5.6 52 25-85 22-73 (260)
460 TIGR03345 VI_ClpV1 type VI sec 93.5 0.59 1.3E-05 48.7 10.3 17 28-44 598-614 (852)
461 cd01128 rho_factor Transcripti 93.5 0.38 8.3E-06 41.9 7.7 19 23-41 13-31 (249)
462 COG2109 BtuR ATP:corrinoid ade 93.4 0.63 1.4E-05 37.9 8.2 139 29-187 31-174 (198)
463 COG2874 FlaH Predicted ATPases 93.4 2.9 6.2E-05 35.1 12.0 46 135-180 121-169 (235)
464 TIGR03819 heli_sec_ATPase heli 93.4 0.15 3.2E-06 46.8 5.2 54 12-74 163-217 (340)
465 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.21 4.7E-06 46.1 6.3 28 25-53 133-160 (358)
466 TIGR01243 CDC48 AAA family ATP 93.3 0.77 1.7E-05 47.3 10.9 18 26-43 212-229 (733)
467 PF03969 AFG1_ATPase: AFG1-lik 93.3 0.79 1.7E-05 42.4 9.8 110 26-182 62-172 (362)
468 PF04665 Pox_A32: Poxvirus A32 93.3 0.13 2.9E-06 44.2 4.5 35 28-70 15-49 (241)
469 KOG0741 AAA+-type ATPase [Post 93.2 0.3 6.4E-06 46.4 6.9 44 135-178 322-379 (744)
470 PF06309 Torsin: Torsin; Inte 93.2 0.58 1.3E-05 35.6 7.3 57 29-86 56-113 (127)
471 TIGR03880 KaiC_arch_3 KaiC dom 93.2 0.2 4.3E-06 43.2 5.6 51 26-85 16-66 (224)
472 CHL00176 ftsH cell division pr 93.2 0.71 1.5E-05 46.3 10.0 17 27-43 217-233 (638)
473 COG4185 Uncharacterized protei 93.1 0.41 8.8E-06 37.9 6.4 38 29-78 5-42 (187)
474 PF10412 TrwB_AAD_bind: Type I 93.1 0.14 3.1E-06 48.1 4.8 46 24-77 13-58 (386)
475 cd00544 CobU Adenosylcobinamid 93.1 0.17 3.7E-06 41.2 4.7 47 29-86 2-48 (169)
476 KOG2543 Origin recognition com 93.1 1.1 2.5E-05 40.8 10.0 140 12-182 10-162 (438)
477 TIGR02788 VirB11 P-type DNA tr 93.1 0.15 3.3E-06 46.2 4.8 25 25-50 143-167 (308)
478 KOG0744 AAA+-type ATPase [Post 93.0 0.32 7E-06 43.1 6.4 54 28-84 179-232 (423)
479 TIGR00767 rho transcription te 93.0 0.57 1.2E-05 43.5 8.3 26 25-51 167-192 (415)
480 COG0542 clpA ATP-binding subun 93.0 1.1 2.4E-05 45.3 10.8 38 28-74 523-560 (786)
481 COG0630 VirB11 Type IV secreto 92.9 0.24 5.2E-06 44.9 5.8 57 9-74 125-182 (312)
482 TIGR02012 tigrfam_recA protein 92.9 0.24 5.2E-06 44.8 5.8 44 26-77 55-98 (321)
483 TIGR01241 FtsH_fam ATP-depende 92.9 0.79 1.7E-05 44.8 9.8 17 27-43 89-105 (495)
484 PF01745 IPT: Isopentenyl tran 92.8 0.18 4E-06 42.0 4.5 18 29-46 4-21 (233)
485 PF13555 AAA_29: P-loop contai 92.8 0.18 3.9E-06 33.0 3.5 24 26-51 23-46 (62)
486 COG3267 ExeA Type II secretory 92.7 0.48 1E-05 40.7 6.9 47 22-77 46-93 (269)
487 cd01126 TraG_VirD4 The TraG/Tr 92.7 0.091 2E-06 49.5 3.0 47 28-84 1-47 (384)
488 KOG0737 AAA+-type ATPase [Post 92.6 0.68 1.5E-05 41.9 7.9 19 26-44 127-145 (386)
489 cd00983 recA RecA is a bacter 92.5 0.28 6.1E-06 44.4 5.7 44 26-77 55-98 (325)
490 PRK05800 cobU adenosylcobinami 92.5 0.7 1.5E-05 37.7 7.6 48 28-86 3-50 (170)
491 PF02534 T4SS-DNA_transf: Type 92.5 0.16 3.4E-06 49.4 4.4 49 27-85 45-93 (469)
492 COG1200 RecG RecG-like helicas 92.5 0.49 1.1E-05 46.4 7.5 77 242-318 311-392 (677)
493 TIGR02237 recomb_radB DNA repa 92.5 0.21 4.5E-06 42.5 4.7 38 26-71 12-49 (209)
494 PRK08058 DNA polymerase III su 92.4 1.3 2.8E-05 40.7 10.0 42 134-176 107-148 (329)
495 TIGR02784 addA_alphas double-s 92.4 0.38 8.2E-06 52.2 7.4 101 26-131 10-125 (1141)
496 PF02367 UPF0079: Uncharacteri 92.4 0.15 3.3E-06 38.8 3.3 42 24-76 13-54 (123)
497 TIGR00763 lon ATP-dependent pr 92.3 0.93 2E-05 46.9 9.9 17 27-43 348-364 (775)
498 TIGR01243 CDC48 AAA family ATP 92.3 0.53 1.1E-05 48.5 8.1 17 27-43 488-504 (733)
499 TIGR00150 HI0065_YjeE ATPase, 92.3 0.13 2.7E-06 39.9 2.7 42 25-77 21-62 (133)
500 PHA02542 41 41 helicase; Provi 92.3 1.8 4E-05 41.7 11.1 49 26-83 190-238 (473)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-64 Score=456.49 Aligned_cols=357 Identities=47% Similarity=0.784 Sum_probs=328.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhh-cCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++...||..|+|+|.+.|+.+++|++++..+.||||||+.|++|++.++.. .....+++++.+||++||++|+.|+.+
T Consensus 104 ~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~ 183 (519)
T KOG0331|consen 104 KALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA 183 (519)
T ss_pred HHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999997 555667779999999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
++..+...+ .++..+++||.....+...+..+.+|+|+||++|.+++......++++.++|+||||+|++.+|.+.+..
T Consensus 184 ~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~ 262 (519)
T KOG0331|consen 184 EAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRK 262 (519)
T ss_pred HHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHH
Confidence 999998876 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC-CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcC--CCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhh
Q 013962 161 VMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 161 ~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
|+..+ ++..|+++.|||.|..+..++..|+.+|..+.+.... ....++.+....++...+...+...+....
T Consensus 263 Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~----- 337 (519)
T KOG0331|consen 263 ILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDIS----- 337 (519)
T ss_pred HHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHh-----
Confidence 99999 4455799999999999999999999999998887553 566778888888887777777766665554
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
....+++||||+++..|+.++..|...++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|+|++||+|
T Consensus 338 -~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 338 -SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred -ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 2455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhc
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (433)
|+|.+.++|+||+||+||.|+.|.++++++..+......+.+.+.+..
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG 464 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999998888776543
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-63 Score=426.74 Aligned_cols=349 Identities=41% Similarity=0.620 Sum_probs=328.3
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++.+..|+.+|+++|.++++.++.|+++|..+.||||||.+|++|+++.+++++. ..+++|++|+++|+.|+.+.
T Consensus 74 ~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lVLtPtRELA~QI~e~ 148 (476)
T KOG0330|consen 74 EACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALVLTPTRELAQQIAEQ 148 (476)
T ss_pred HHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEEecCcHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999653 68999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+..+.... ++.+..+.||.+...+...+...++|+|+||++|++++.+ +.+.+..++++|+||||++++.+|...+..
T Consensus 149 fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 149 FEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99998775 8999999999999999999999999999999999999994 567788999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
|+..+|...|.+++|||++..+..+...-+.+|..+.....+...+.+.+.+.+++...+...++..+.+.
T Consensus 228 ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~--------- 298 (476)
T KOG0330|consen 228 ILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL--------- 298 (476)
T ss_pred HHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhh---------
Confidence 99999999999999999999999999999999999999999999999999999999998888888777643
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
.+.++||||++...+..++-.|...|+.+..+||.|++..|...++.|++|..+||||||++++|+|+|.+++||+||.|
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP 378 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIP 378 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCC
Confidence 33669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhc
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (433)
.+..+|+||+||++|.|..|.++.+++..|.+.+.+|+..+.+.-
T Consensus 379 ~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 379 THSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999998887654
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.6e-60 Score=456.93 Aligned_cols=356 Identities=44% Similarity=0.711 Sum_probs=312.7
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++|..+||.+|+|+|.++++.+++++++++.+|||||||++|++|++..+..........++.+|||+||++|+.|+.++
T Consensus 143 ~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 143 KSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999988765444445578999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... .+.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+||||++++++|...+..+
T Consensus 223 ~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~i 301 (545)
T PTZ00110 223 CNKFGASS-KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKI 301 (545)
T ss_pred HHHHhccc-CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHH
Confidence 99987654 68888899998888777778888999999999999999988888899999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcC-CCeEEEecCcC-CCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
+..+++..|++++|||++..+......++. .+..+...... ....++.+.+..+...++...+...+....
T Consensus 302 l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~------- 374 (545)
T PTZ00110 302 VSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIM------- 374 (545)
T ss_pred HHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhc-------
Confidence 999999999999999999999888888875 46666554433 334556666666666666666655554322
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
..+.++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 375 ~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~ 454 (545)
T PTZ00110 375 RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF 454 (545)
T ss_pred ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC
Confidence 14567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhc
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (433)
|.+...|+||+||+||.|..|.+++++++.|......+.+.+.+..
T Consensus 455 P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 455 PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred CCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999988888888776543
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-59 Score=442.59 Aligned_cols=352 Identities=37% Similarity=0.571 Sum_probs=306.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC--CCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~--~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||.+|+|+|.++++.+++++|+++.||||||||++|++|++..+...... ....++++||++||++|+.|++
T Consensus 21 ~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 21 EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999988764321 1124678999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
+.+..+.... ++.+..+.|+.........+..+++|+|+||++|.+++......+.++++||+||||++++.++...+.
T Consensus 101 ~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~ 179 (423)
T PRK04837 101 ADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIR 179 (423)
T ss_pred HHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHH
Confidence 9999988765 689999999988887777777889999999999999998888889999999999999999999999999
Q ss_pred HHHhhCCC--CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhh
Q 013962 160 EVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 160 ~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
.++..++. ..+.+++|||++.........++.+|..+...........+.+.+.......+...+...+..
T Consensus 180 ~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~------- 252 (423)
T PRK04837 180 WLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE------- 252 (423)
T ss_pred HHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHh-------
Confidence 99988874 446789999999999998888998888877765555555566656555555555444443322
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
....++||||+++..|+.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+|
T Consensus 253 --~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~ 330 (423)
T PRK04837 253 --EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNY 330 (423)
T ss_pred --cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEe
Confidence 223569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
++|.+...|+||+||+||.|..|.+++|+.+.|...+..+++.+..
T Consensus 331 d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 331 DLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred CCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999988888888766543
No 5
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.7e-59 Score=450.59 Aligned_cols=347 Identities=41% Similarity=0.668 Sum_probs=312.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++|+.+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+.... .++++||++||++|+.|++++
T Consensus 19 ~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LIL~PTreLa~Qv~~~ 93 (629)
T PRK11634 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILVLAPTRELAVQVAEA 93 (629)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEEEeCcHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999998875432 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.....++.+..++|+.+...+...+..+++|+|+||++|++++.+....+.++.+||+||||.+++.++...+..+
T Consensus 94 l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~I 173 (629)
T PRK11634 94 MTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 (629)
T ss_pred HHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHH
Confidence 99998877789999999999888887778888999999999999999988888999999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+..++...|++++|||+|..+......++.++..+.+.......+.+.+.+..+....+...+...+.. ..
T Consensus 174 l~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~---------~~ 244 (629)
T PRK11634 174 MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA---------ED 244 (629)
T ss_pred HHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHh---------cC
Confidence 999999999999999999999999999999998887776666666777777777666666665555432 22
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 321 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~ 321 (433)
..++||||+++..++.+++.|...++.+..+|++|++.+|..+++.|++|+++|||||+++++|+|+|++++||+|+.|.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
+...|+||+||+||.|..|.+++++.+.|...++.+++.+.
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred CHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988888888776543
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-59 Score=445.12 Aligned_cols=352 Identities=46% Similarity=0.721 Sum_probs=317.2
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
++++...||..|+|+|..+++.++.++++++.++||||||++|++|+++.+..... .....+||++||++|+.|+++
T Consensus 41 l~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~aLil~PTRELA~Qi~~ 117 (513)
T COG0513 41 LQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVSALILAPTRELAVQIAE 117 (513)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc---cCCCceEEECCCHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999764211 011119999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.+..+.....++.+..++||.+...+...+..+++|+|+||+++++++.+....+..+.++|+|||++|++.+|...+..
T Consensus 118 ~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 118 ELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred HHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHH
Confidence 99999887646889999999999988888888899999999999999999989999999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCC--CCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhh
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENE-KVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 237 (433)
++..++...|++++|||++..+..+...++.+|..+.+..... ....+.+.+..+.... +...+...+...
T Consensus 198 I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~------ 271 (513)
T COG0513 198 ILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE------ 271 (513)
T ss_pred HHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC------
Confidence 9999999999999999999999999999999999888874444 7788999999988766 665555555432
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
...++||||+++..++.++..|...|+++..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++.+||+|
T Consensus 272 ---~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 272 ---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred ---CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 22359999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccc-cHHHHHHHHHHhhhh
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVDA 364 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-d~~~~~~~~~~~~~~ 364 (433)
|.|.++..|+||+||+||.|..|.++.++.+. |...+..+++.+...
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999986 888888888876544
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.2e-59 Score=444.39 Aligned_cols=346 Identities=43% Similarity=0.652 Sum_probs=309.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.+|++.+++++++++++|||||||++|++|++..+.... ...++||++||++|+.|+.++
T Consensus 17 ~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil~PtreLa~Q~~~~ 91 (460)
T PRK11776 17 ANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVLCPTRELADQVAKE 91 (460)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEEeCCHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999875432 256799999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
++.+.....++.+..++|+.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||++.+.++...+..+
T Consensus 92 ~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i 171 (460)
T PRK11776 92 IRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAI 171 (460)
T ss_pred HHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHH
Confidence 99988766678999999999988888888888999999999999999988888899999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+..++...|++++|||++..+......++.+|..+...... ....+.+.+..+....+...+...+.. ..
T Consensus 172 ~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~---------~~ 241 (460)
T PRK11776 172 IRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLH---------HQ 241 (460)
T ss_pred HHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHh---------cC
Confidence 99999999999999999999999999999999888775543 344566777777776666555554432 22
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 321 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~ 321 (433)
..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
+...|+||+||+||.|..|.+++++.+.|...+..+++.+.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888888877654
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.7e-59 Score=441.85 Aligned_cols=352 Identities=42% Similarity=0.701 Sum_probs=306.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-CCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
++|..+||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+....... .....++|||+||++|+.|+.+
T Consensus 14 ~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 14 RAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999886543211 1224589999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.+..+.... ++.+..++|+.....+...+..+++|+|+||++|++++......+.++++|||||||+++++++...+..
T Consensus 94 ~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~ 172 (456)
T PRK10590 94 NVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRR 172 (456)
T ss_pred HHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHH
Confidence 999988765 6888889999988877777778899999999999999888878889999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
++..++...|++++|||++..+......++.++..+...........+.+.+..++...+...+...+ . ..
T Consensus 173 il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~-~--------~~ 243 (456)
T PRK10590 173 VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI-G--------KG 243 (456)
T ss_pred HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH-H--------cC
Confidence 99999989999999999999999999999989887776655555566666666665544432222221 1 12
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+|+.|
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P 323 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELP 323 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
.++.+|+||+||+||.|..|.+++++...|...++.+++.+..
T Consensus 324 ~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 324 NVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred CCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998888888776543
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-58 Score=443.95 Aligned_cols=354 Identities=38% Similarity=0.647 Sum_probs=307.8
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~--~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
++|...||..|+|+|.++++.+++|+++++.+|||||||++|++|++..+..... .....++++||++||++|+.|+.
T Consensus 134 ~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~ 213 (518)
T PLN00206 134 LNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVE 213 (518)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999988764311 11234789999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
+.++.+.... ++.+..+.|+.....+...+..+++|+|+||++|.+++......+.++.+||+||||++++++|...+.
T Consensus 214 ~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 214 DQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHHHHHhCCC-CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 9999887665 578888888888777777777889999999999999998888889999999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcC
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
.++..++ ..|++++|||++..+......+..++..+...........+.+....+....+...+...+....
T Consensus 293 ~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~------- 364 (518)
T PLN00206 293 QIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQ------- 364 (518)
T ss_pred HHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhc-------
Confidence 9988885 67999999999999999999999888888877666656666777777776666555555443221
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHH-CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVA-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
...+++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+|+
T Consensus 365 ~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d 444 (518)
T PLN00206 365 HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFD 444 (518)
T ss_pred ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeC
Confidence 2235699999999999999999975 588999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhh
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~ 364 (433)
+|.+..+|+||+||+||.|..|.+++++...|...+..+.+.+...
T Consensus 445 ~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~ 490 (518)
T PLN00206 445 MPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSS 490 (518)
T ss_pred CCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988888887776653
No 10
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9.6e-59 Score=408.36 Aligned_cols=350 Identities=36% Similarity=0.539 Sum_probs=313.7
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++|..+||.+||++|+..++.++.|+++++.|.||+|||++|++|+++.+.......+ ++..++|+|||++|+.|.+.
T Consensus 94 ~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q~~~ 172 (543)
T KOG0342|consen 94 LKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQIFA 172 (543)
T ss_pred HHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEEecccHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999998765555 68899999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCCCHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
+.+.+......+.+..+.||.+.....+.+..+++|+|+||++|.+++.+... .+++.+++|+||||++++.+|...+.
T Consensus 173 eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~ 252 (543)
T KOG0342|consen 173 EAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVE 252 (543)
T ss_pred HHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHH
Confidence 99999998888999999999998888888888999999999999999998654 34567899999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCC-CeEEEecCc--CCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhh
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKV--SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (433)
.|+..++...|.+++|||.++.++..+..-+.. +..+..... ......+.+.+...+....+..+...+.+...
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~--- 329 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIK--- 329 (543)
T ss_pred HHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcC---
Confidence 999999999999999999999999998877765 555554433 23344566766666666666666666665431
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
..++||||+|......+++.|+..+++|..+||+.++..|..+..+|.+.+..|||||+++++|+|+|+|+.||+
T Consensus 330 -----~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ 404 (543)
T KOG0342|consen 330 -----RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ 404 (543)
T ss_pred -----CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE
Confidence 156999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 317 LDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 317 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
+|+|.++.+|+||+||+||.|..|.+++++.+.+..++..+++
T Consensus 405 ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 405 YDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred eCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998873
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.7e-59 Score=411.19 Aligned_cols=352 Identities=46% Similarity=0.761 Sum_probs=327.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCC----CCCCceEEEEcCcHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG----RGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~----~~~~~~~lvl~P~~~L~~q 77 (433)
+.|...||..|+|+|..+++..++.+++|..+.||||||++|++|++.++...++.. ...|+.++++.||++|++|
T Consensus 258 ~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqq 337 (673)
T KOG0333|consen 258 SVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQ 337 (673)
T ss_pred HHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHH
Confidence 457789999999999999999999999999999999999999999999988766433 2458999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHH
Q 013962 78 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
+.++-.+|.+.+ ++.++.+.|+...+++--.+..++.|+|+||+.|.+.+.+..+.+....+||+|||++|.+.+|.+.
T Consensus 338 IeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~d 416 (673)
T KOG0333|consen 338 IEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPD 416 (673)
T ss_pred HHHHHHHhcccc-cceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHH
Confidence 999999998877 6999999999999988778889999999999999999999888899999999999999999999999
Q ss_pred HHHHHhhCCC-------------------------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEE
Q 013962 158 IREVMQNLPD-------------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL 212 (433)
Q Consensus 158 ~~~~~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (433)
+..++..+|. ..|.+.+|||+++.+..++..|+.+|+.+.++....+.+.+.+.+
T Consensus 417 v~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333|consen 417 VQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEE
Confidence 9999988864 158899999999999999999999999999999999999999999
Q ss_pred EEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCC
Q 013962 213 EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 292 (433)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 292 (433)
..++.+++...+++.+... ..+|+|||+|+++.|+.+++.|.+.++++..|||+.++++|...++.|++|.
T Consensus 497 ~m~~ed~k~kkL~eil~~~---------~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t 567 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESN---------FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT 567 (673)
T ss_pred EEecchHHHHHHHHHHHhC---------CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC
Confidence 9999999988888877653 3467999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 293 ~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
.+|||||+++++|||+|+|.+||+|+.++|..+|.||+||+||.|+.|.++.|+++.|...+..|.+.+..
T Consensus 568 ~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 568 GDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred CCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888887763
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-58 Score=441.75 Aligned_cols=351 Identities=41% Similarity=0.602 Sum_probs=303.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC--CCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~--~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
++|..+||..|+|+|.++|+.+++++|+++.+|||||||++|++|++..+...... ....+.++|||+||++|+.|++
T Consensus 22 ~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 22 AGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999988754211 1123578999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCCHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+.+..+.... ++.+..++|+.....+...+..+++|+|+||++|++++... ...+..+++|||||||++++.++...+
T Consensus 102 ~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i 180 (572)
T PRK04537 102 KDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 180 (572)
T ss_pred HHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHH
Confidence 9999988764 68999999999988877777788999999999999988764 356788999999999999999999999
Q ss_pred HHHHhhCCC--CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhh
Q 013962 159 REVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 159 ~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (433)
..++..++. ..|++++|||++..+......++..+..+...........+.+.+.......+...+...+..
T Consensus 181 ~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~------ 254 (572)
T PRK04537 181 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSR------ 254 (572)
T ss_pred HHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhc------
Confidence 999998876 679999999999999999888988887766555444455566666665555555444443321
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
..+.++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 255 ---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn 331 (572)
T PRK04537 255 ---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN 331 (572)
T ss_pred ---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE
Confidence 33467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 317 LDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 317 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
|+.|.+...|+||+||+||.|..|.+++++.+.+...+..+++.+.
T Consensus 332 yd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 332 YDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred cCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988887888776543
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-59 Score=383.46 Aligned_cols=347 Identities=35% Similarity=0.591 Sum_probs=319.1
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
||++...||.+|+..|+.|++.++.|+++++++..|+|||.+|.+.+++.+.-.. +..++++++||++|+.|+.+
T Consensus 39 LrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~tQ~lilsPTRELa~Qi~~ 113 (400)
T KOG0328|consen 39 LRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RETQALILSPTRELAVQIQK 113 (400)
T ss_pred HHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----ceeeEEEecChHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998887777654432 25789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.+..+.... ++.+..+.||.+..+.-+.+..+.+++.+||+++++++++.....+.++++|+||++.+++.++...+..
T Consensus 114 vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd 192 (400)
T KOG0328|consen 114 VILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYD 192 (400)
T ss_pred HHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHH
Confidence 999988776 7899999999998888788888899999999999999999988889999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (433)
++..+|+..|++++|||+|..+.+..+.|..+|+.+.......+...+.+++..+..++ +.+.+..+......
T Consensus 193 iyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtI------ 266 (400)
T KOG0328|consen 193 IYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI------ 266 (400)
T ss_pred HHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhheh------
Confidence 99999999999999999999999999999999999999998888888999998888776 77777666544322
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
...+||||++..+..+.+.++..++.+...||+|++++|..++++|++|+.+||++|++.++|+|+|.+.+||+||.
T Consensus 267 ---tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328|consen 267 ---TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred ---heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
|.+...|+||+||+||.|.+|.++-++...|...+..+++.+.
T Consensus 344 P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 344 PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred CccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988888877654
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.8e-57 Score=430.07 Aligned_cols=351 Identities=39% Similarity=0.625 Sum_probs=304.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|++|+++.+.... .......++||++|+++|+.|+++.
T Consensus 14 ~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~lil~Pt~eLa~Q~~~~ 92 (434)
T PRK11192 14 EALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-RRKSGPPRILILTPTRELAMQVADQ 92 (434)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCceEEEECCcHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999887532 1122357899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ++.+..++|+.....+...+..+++|+|+||++|++++......+.++++||+||||+++++++...+..+
T Consensus 93 ~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i 171 (434)
T PRK11192 93 ARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI 171 (434)
T ss_pred HHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHH
Confidence 99988765 68999999999888887777788999999999999999888888899999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecch-HHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 162 MQNLPDKHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
...++...|++++|||++. .+......++.++..+...........+.+.+...+.......++..+... .
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~--------~ 243 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQ--------P 243 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhc--------C
Confidence 9988888999999999985 467777778888888777665555566666666555433333333222221 2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
...++||||++++.++.+++.|...++.+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p 323 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMP 323 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
.+...|+||+||+||.|..|.+++++...|...+..+++.+.
T Consensus 324 ~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 324 RSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred CCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888876554
No 15
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-56 Score=426.25 Aligned_cols=351 Identities=40% Similarity=0.637 Sum_probs=301.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCC--CCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~--~~~~~~~lvl~P~~~L~~q~~ 79 (433)
++|..+||.+|+++|.++++.+++|+|+++.+|||||||++|++|++..+....... .....++|||+||++|+.|++
T Consensus 100 ~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~ 179 (475)
T PRK01297 100 HAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIA 179 (475)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999987653211 112578999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHh-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+.++.+.... ++.+..+.|+.+.......+ ...++|+|+||++|.+++......++++++|||||+|++.+.++...+
T Consensus 180 ~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l 258 (475)
T PRK01297 180 KDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQV 258 (475)
T ss_pred HHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHH
Confidence 9999987765 68888889987766655554 356899999999999988888888899999999999999999998899
Q ss_pred HHHHhhCCC--CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhh
Q 013962 159 REVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 159 ~~~~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (433)
..++..++. ..|++++|||++.........++.++..+...........+.+.+..+...++...+...+..
T Consensus 259 ~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~------ 332 (475)
T PRK01297 259 RQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQ------ 332 (475)
T ss_pred HHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHh------
Confidence 999888754 568999999999999999999998888877665555555556666665555554444333321
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
....++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 333 ---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~ 409 (475)
T PRK01297 333 ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN 409 (475)
T ss_pred ---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 317 LDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 317 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
++.|.|..+|+||+||+||.|..|.+++++...|......+++.+.
T Consensus 410 ~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 410 FTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred eCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999888877777776654
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-57 Score=395.38 Aligned_cols=347 Identities=34% Similarity=0.522 Sum_probs=310.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++++.+||.++||+|..+++.++.++++++.++||||||++|++|+++.+..+.....+..-.+|||+||++|+.|+.+.
T Consensus 19 ~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V 98 (567)
T KOG0345|consen 19 EALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREV 98 (567)
T ss_pred HHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999765443333345789999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHh-hCCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEcccchhccCCCHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTS--LSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~~~~--~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+..|...+.++++.++.||....+..... ..+++|+|+||++|.+++.+.... ++++.++|+||||++++.+|...+
T Consensus 99 ~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~ 178 (567)
T KOG0345|consen 99 AQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASV 178 (567)
T ss_pred HHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHH
Confidence 99999888899999999998877665554 456889999999999999885544 458999999999999999999999
Q ss_pred HHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCC--CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhh
Q 013962 159 REVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENEKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (433)
..|+..+|...+.=++|||....+..+....+.+|+.+.+..... .+..+...+..+...++...++..+..
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~------ 252 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN------ 252 (567)
T ss_pred HHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc------
Confidence 999999999999999999999999999999999999998877665 556677788888999999888888866
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
....++|||++|-..++.....+... ...+..+||.|.++.|..+++.|.+..-.+|+||+++++|+|+|+++.|
T Consensus 253 ---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~V 329 (567)
T KOG0345|consen 253 ---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLV 329 (567)
T ss_pred ---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEE
Confidence 33467999999999999999988776 6788999999999999999999999777899999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
|++|+|.++..|+||.||++|.|..|.+++++.+.+..+++.+
T Consensus 330 vQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 330 VQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred EecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 9999999999999999999999999999999999877666544
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-58 Score=404.50 Aligned_cols=349 Identities=38% Similarity=0.627 Sum_probs=317.1
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
|+++..+||..|+|+|..+|+..+-|++++.+|.||||||.+|++|+++.++..+. +-...+|||+|||++|+.|.+.
T Consensus 193 Lka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk--~~~~TRVLVL~PTRELaiQv~s 270 (691)
T KOG0338|consen 193 LKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK--KVAATRVLVLVPTRELAIQVHS 270 (691)
T ss_pred HHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc--cCcceeEEEEeccHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999988653 2346799999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEcccchhccCCCHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
..+++..+. ++.+++..||.+...+...+...++|+|+||++|.+++.+.. +.+.++.++|+|||++|++.+|...+.
T Consensus 271 V~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 271 VTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 999988775 699999999999999999999999999999999999998864 568899999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc--hhhHHHHHHHHHHHHHhhhh
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE--NEKVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 237 (433)
+|+..++.+.|.+++|||+...+..++..-+..|+.+.+.......+.+.+-+..+.. +.....++..+.....
T Consensus 350 Eii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf---- 425 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTF---- 425 (691)
T ss_pred HHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999888888888777766543 2333455555544433
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
...++||+.++..|.++.-.|.-.|+++.-+||.+++.+|...++.|++++++|||||+++++|+||+++.+||+|
T Consensus 426 ----~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy 501 (691)
T KOG0338|consen 426 ----QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINY 501 (691)
T ss_pred ----ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEec
Confidence 2349999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHH
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~ 360 (433)
..|.+...|+||+||++|.|..|.+++++...|...++.+.+.
T Consensus 502 ~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 502 AMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred cCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999888776554
No 18
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.5e-55 Score=414.27 Aligned_cols=346 Identities=37% Similarity=0.595 Sum_probs=295.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||||||++|++|++..+... ..+.++||++|+++|+.|+.+.
T Consensus 41 ~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~lil~Pt~~L~~Q~~~~ 115 (401)
T PTZ00424 41 RGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALILAPTRELAQQIQKV 115 (401)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEEECCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999876432 1367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ...+..+.|+.........+..+.+|+|+||+.+.+.+.+....+.++++||+||+|++.+.++...+..+
T Consensus 116 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i 194 (401)
T PTZ00424 116 VLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDV 194 (401)
T ss_pred HHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHH
Confidence 99887654 56777788888777766677777899999999999998887778899999999999999998888888999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (433)
+..+++..|++++|||++.........++.++..+...........+.+.+....... +...+...+ . ..
T Consensus 195 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~--------~~ 265 (401)
T PTZ00424 195 FKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLY-E--------TL 265 (401)
T ss_pred HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHH-H--------hc
Confidence 9999999999999999999888888888888877665544444445555555544322 222222211 1 12
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
...++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 23569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
.+...|+||+||+||.|..|.|++++.+.|......+++...
T Consensus 346 ~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred CCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999888887766543
No 19
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-56 Score=383.14 Aligned_cols=355 Identities=44% Similarity=0.698 Sum_probs=316.2
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCCCCceEEEEcCcHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
|++|...||++|+|+|.+|++-+++|.+++..+.||+|||++|++|-+.++..++.. ....++.+|+++||++|+.|+.
T Consensus 232 menIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie 311 (629)
T KOG0336|consen 232 MENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIE 311 (629)
T ss_pred HHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHH
Confidence 567889999999999999999999999999999999999999999998887765432 3456899999999999999998
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
-+..++. ..+++..+++|+.+..++.+.+..+.+|+++||.+|.++...+...+.++.++|+|||++|++.+|...++
T Consensus 312 ~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIr 389 (629)
T KOG0336|consen 312 GEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIR 389 (629)
T ss_pred hHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHH
Confidence 8887764 35899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCC-CCceEEEEEcCchhhHHHHHHHHHHHHHhhhhc
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPT-ANVIQILEKVSENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
+++....+..|+++.|||.|..+..++..|+.+|..+.++...-.. ..+.+.+ .+..+.....++..+.+..
T Consensus 390 killdiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~m------ 462 (629)
T KOG0336|consen 390 KILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANM------ 462 (629)
T ss_pred HHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999998887655433 3455555 4444333334444444332
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
.++.++||||..+..|..+...|.-.|+....+||+..+.+|+..++.|++|+++|||||+.+++|+|+|++.+|++||
T Consensus 463 -s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 463 -SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred -CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccC
Confidence 5667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhc
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (433)
+|.+.+.|+||+||+||.|..|.++.++...|-..++.+.+.+...+
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae 588 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE 588 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888888776554
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-55 Score=394.64 Aligned_cols=363 Identities=46% Similarity=0.736 Sum_probs=328.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCC-----CCCceEEEEcCcHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR-----GDGPLALVLAPTRELAQ 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~-----~~~~~~lvl~P~~~L~~ 76 (433)
.+++..++..|+|+|+.+++.+..|++++++|+||||||.+|++|++.+++....... ...++++|++||++|+.
T Consensus 87 ~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 87 GNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred hccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhh
Confidence 3577889999999999999999999999999999999999999999999998644221 12589999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCH
Q 013962 77 QIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFE 155 (433)
Q Consensus 77 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~ 155 (433)
|++++.+++... ..+.+..++|+.+...+...+..+++|+|+||++|.+.+......+.+++++|+|||++|++ .+|.
T Consensus 167 Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~ 245 (482)
T KOG0335|consen 167 QIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFE 245 (482)
T ss_pred HHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccc
Confidence 999999998765 47899999999998888888999999999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHhhCCC----CCcEEEEEeecchHHHHHHHHhcCC-CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHH
Q 013962 156 PQIREVMQNLPD----KHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 230 (433)
Q Consensus 156 ~~~~~~~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (433)
+.+++++..... ..|.+++|||.|..+...+..++.+ +..+.+........++.+.+.++...++...++..+..
T Consensus 246 p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~ 325 (482)
T KOG0335|consen 246 PQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNK 325 (482)
T ss_pred ccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhc
Confidence 999999987753 6799999999999999998888887 77888888899999999999999999999999988876
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCC
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG 310 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 310 (433)
............++++|||.+++.+..++..|...++++..+|+..++.+|.+.++.|+.|.+.+||||+++++|+|+|+
T Consensus 326 ~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~ 405 (482)
T KOG0335|consen 326 DDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPN 405 (482)
T ss_pred ccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCC
Confidence 54321222233457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhc
Q 013962 311 VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAE 365 (433)
Q Consensus 311 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~ 365 (433)
|++||+||.|.+..+|+||+||+||.|+.|.++.|+...+....+.+.+.+.+.+
T Consensus 406 V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 406 VKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred CceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999888888888888776543
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-55 Score=370.19 Aligned_cols=349 Identities=39% Similarity=0.562 Sum_probs=308.1
Q ss_pred cccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+..+|+.+|+|+|..|++.|++|+++|=+|.||||||.+|.+|+++.+..++ .+..++|++||++|+-|+.++|.
T Consensus 22 l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalvlTPTrELA~QiaEQF~ 96 (442)
T KOG0340|consen 22 LKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALVLTPTRELALQIAEQFI 96 (442)
T ss_pred HHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEEecchHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999988765 48999999999999999999999
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC----CCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~----~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
.+.+.+ ++++.++.|+.+.-.+...+...++++++||+++.+++..+ ...+.++.++|+|||+++++..|...+.
T Consensus 97 alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~ 175 (442)
T KOG0340|consen 97 ALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILE 175 (442)
T ss_pred Hhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHh
Confidence 887765 79999999999988888888899999999999999988876 2346779999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCC--CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhh
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
.+.+.+|...|.+++|||+.+.+.....--... ...+......+....+.+-+..++...+...+...+......
T Consensus 176 ~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~--- 252 (442)
T KOG0340|consen 176 GIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENK--- 252 (442)
T ss_pred hhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhc---
Confidence 999999999999999999987776654433333 334444455556666777777777777666666665544321
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
.++.++||+++..+|+.++-.|+..++.+..+|+.|++++|...+.+|+++..+|||||+++++|+|+|.|+.||++
T Consensus 253 ---~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~ 329 (442)
T KOG0340|consen 253 ---ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNH 329 (442)
T ss_pred ---cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEec
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhh
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~ 364 (433)
+.|.++.+|+||+||++|.|..|.++.+++..|...+..+++.+.++
T Consensus 330 diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 330 DIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999887654
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-54 Score=385.23 Aligned_cols=348 Identities=35% Similarity=0.575 Sum_probs=313.2
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++|...+|..|+.+|+.+|+..+.|++++-++.||||||++|+.|+++.+....= ....|-.+|||+||++|+.|+++
T Consensus 81 ~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFe 159 (758)
T KOG0343|consen 81 LKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGALIISPTRELALQTFE 159 (758)
T ss_pred HHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999987421 12358889999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
.+.+..... ++..+.+.||.+.......+ +..+|+||||++|+.++..+ .+...++.++|+|||+++++.+|...+.
T Consensus 160 vL~kvgk~h-~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~ 237 (758)
T KOG0343|consen 160 VLNKVGKHH-DFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLN 237 (758)
T ss_pred HHHHHhhcc-ccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHH
Confidence 999998775 79999999999876655555 56899999999999998765 3456789999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecC--cCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhh
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK--VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
.|+..+|+..|.+++|||....+..++...+.+|.++.+.. ....+.++.+.+..++...+++.+...+..
T Consensus 238 ~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~s------- 310 (758)
T KOG0343|consen 238 AIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKS------- 310 (758)
T ss_pred HHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHh-------
Confidence 99999999999999999999999999999999999887763 355677888999999999999998888866
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 315 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 315 (433)
+...++|||++|..++..+++.+.+. |+++..+||.|++..|..+...|.....-||+||+++++|+|+|.|++||
T Consensus 311 --hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi 388 (758)
T KOG0343|consen 311 --HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI 388 (758)
T ss_pred --ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE
Confidence 44467999999999999999999887 78999999999999999999999998888999999999999999999999
Q ss_pred EccCCCChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHH
Q 013962 316 NLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKA 360 (433)
Q Consensus 316 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~ 360 (433)
++|.|.++..|+||+||++|.+..|.+++++.+.+ ..++..+++.
T Consensus 389 Q~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 389 QVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred EecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999988 6666666654
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-56 Score=369.59 Aligned_cols=346 Identities=34% Similarity=0.575 Sum_probs=316.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+|-+.||.+|+|+|+++++.++.|+++++.+..|+|||.+|++|+++.+.... +.-+++++||+++|+-|..+.
T Consensus 98 mgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~ilVPtrelALQtSqv 172 (459)
T KOG0326|consen 98 MGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAIILVPTRELALQTSQV 172 (459)
T ss_pred HHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEEEeecchhhHHHHHH
Confidence 457789999999999999999999999999999999999999999999876532 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
++.+.+.+ ++.+...+||++..+.--.+....+++|+||++++++..+.-..+++...+|+|||+.+++.+|...+..+
T Consensus 173 c~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~l 251 (459)
T KOG0326|consen 173 CKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKL 251 (459)
T ss_pred HHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHH
Confidence 99998887 59999999999877665666788999999999999999999889999999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+..+|+..|+++.|||.|..+..+...++..|..+..- ..-....+.+++.++.+..+...+-.++.+...
T Consensus 252 i~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLntLfskLqI-------- 322 (459)
T KOG0326|consen 252 ISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNTLFSKLQI-------- 322 (459)
T ss_pred HHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHHHHHHhcc--------
Confidence 99999999999999999999999999999999888764 344556788889999988888777666554322
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 321 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~ 321 (433)
...|||||+...+|.+++.+.+.|+.|..+|+.|-+++|..++..|++|.++.||||+.+.+|+|++++++||+||+|+
T Consensus 323 -NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 323 -NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred -cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 2389999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
+++.|.||+||+||.|..|.++.+++..|...+.++++.+..
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999999887754
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-54 Score=384.17 Aligned_cols=350 Identities=36% Similarity=0.574 Sum_probs=300.7
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
.+++..||.+|.++|+.++++++++|.++||||||++|++|+++.+... +...+.+|..+|||+||++|+.|.++.+.+
T Consensus 154 ~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 154 KMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred HhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999998874 445677899999999999999999999999
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
+...+.-+..+.+.||.........+..+.+|+|+||++|.+++.+.. +.+..+.+||+||++++++.+|...+..|+.
T Consensus 234 Ll~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 234 LLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred HhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 988776778899999999888888899999999999999999998854 5678899999999999999999999999987
Q ss_pred hCCC-------------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCc-------------------------CCCC
Q 013962 164 NLPD-------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV-------------------------SSPT 205 (433)
Q Consensus 164 ~~~~-------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 205 (433)
.+.. ..|-+++|||+...+..+...-+.+|..+..... ...+
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iP 393 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIP 393 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCc
Confidence 7722 2467899999999999999999999988872211 1223
Q ss_pred CCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC--------------------
Q 013962 206 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------- 265 (433)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------------- 265 (433)
..+.+.+..++..-..-.+...+........ ..++|||+++.+.++.-.+.|...
T Consensus 394 eqL~qry~vVPpKLRLV~Laa~L~~~~k~~~-----~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l 468 (708)
T KOG0348|consen 394 EQLLQRYTVVPPKLRLVALAALLLNKVKFEE-----KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPL 468 (708)
T ss_pred HHhhhceEecCCchhHHHHHHHHHHHhhhhh-----hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhh
Confidence 3344556666666666666666665544322 246999999999988777666432
Q ss_pred --CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEE
Q 013962 266 --GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343 (433)
Q Consensus 266 --~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 343 (433)
+.++..+||+|++.+|..+++.|...+-.||+||+++++|+|+|.|.+||.|++|.++.+|+||+||++|.|..|.++
T Consensus 469 ~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 469 FMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred hhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 456889999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHH
Q 013962 344 SFYTDRDMLLVAQIKKA 360 (433)
Q Consensus 344 ~~~~~~d~~~~~~~~~~ 360 (433)
+|+.+.+..+...++..
T Consensus 549 LfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 549 LFLLPSEAEYVNYLKKH 565 (708)
T ss_pred EEecccHHHHHHHHHhh
Confidence 99999998877766543
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-54 Score=371.31 Aligned_cols=355 Identities=34% Similarity=0.538 Sum_probs=314.3
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCCCCceEEEEcCcHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
|++|...|+.+|+-+|..||+.+++|++++..|.||||||.+|++|+++.++..... ....+..++|++||++|+.|.+
T Consensus 31 lkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy 110 (569)
T KOG0346|consen 31 LKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVY 110 (569)
T ss_pred HHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHH
Confidence 478889999999999999999999999999999999999999999999999886554 4456899999999999999999
Q ss_pred HHHHHHhccCC-CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEcccchhccCCCHHH
Q 013962 80 KEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
..+.++..+.. .+++.-+..+.+.......+...++|+|+||+.+..++.... ..+..+.++|+|||+.++..||...
T Consensus 111 ~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 111 KVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred HHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH
Confidence 99998876654 566666666666666666777889999999999999998776 5678899999999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCC-CCCceEEEEEcCchhhHHHHHHHHHHHHHhhh
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (433)
+..+...+|+..|.++||||+..++..+-..++.+|+.+.......+ +..+.++...+...++...+...+.-....
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~-- 268 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIR-- 268 (569)
T ss_pred HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhc--
Confidence 99999999999999999999999999999999999999887765544 456777888888888877776666554432
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec----------------
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD---------------- 300 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~---------------- 300 (433)
+++|||+|+++.|.++.-.|...|++.++++|.+|...|..++++|.+|-++++|||+
T Consensus 269 ------gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~ 342 (569)
T KOG0346|consen 269 ------GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKS 342 (569)
T ss_pred ------CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccc
Confidence 5699999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------ccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 301 -------------------VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 301 -------------------~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
-.++|||+..|.+|++||.|.++..|+||+||++|.+++|.++.++.+.+......++..+
T Consensus 343 ~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 343 DEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred cccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 2468999999999999999999999999999999999999999999999988777776665
Q ss_pred hh
Q 013962 362 VD 363 (433)
Q Consensus 362 ~~ 363 (433)
.+
T Consensus 423 ~d 424 (569)
T KOG0346|consen 423 KD 424 (569)
T ss_pred hh
Confidence 54
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-53 Score=371.38 Aligned_cols=354 Identities=43% Similarity=0.705 Sum_probs=327.2
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.++-...|.+|||.|.++++..+++++++=.|.||||||.+|+.|++.+++.++....+.++..||+|||++|+.|++.+
T Consensus 236 ~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~e 315 (731)
T KOG0339|consen 236 TAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSE 315 (731)
T ss_pred HHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
.++|++-. ++++++++||-...++...+..++.|||+||++|.+++.-+...+.+..++|+||+++|.+.+|...++.|
T Consensus 316 aKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI 394 (731)
T KOG0339|consen 316 AKKFGKAY-GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSI 394 (731)
T ss_pred HHHhhhhc-cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHH
Confidence 99998765 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc-hhhHHHHHHHHHHHHHhhhhcCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
...+.+..|.+++|||.+..++..+..++.+|+.+..+........+.+.+..+.. ..+...+...+... .
T Consensus 395 ~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f--------~ 466 (731)
T KOG0339|consen 395 KQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF--------S 466 (731)
T ss_pred HhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh--------c
Confidence 99999999999999999999999999999999999988888888888888777765 45566666665543 2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
..+++|||+..+..++.++..|+-.++.+..+||++.+.+|.+++..|+++...|||+|+++.+|+|+|.++.||+||..
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~a 546 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFA 546 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeeccccc
Confidence 33569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~ 364 (433)
.+...+.||+||+||.|..|.+++|++..|..+.-.|.+.++..
T Consensus 547 rdIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~a 590 (731)
T KOG0339|consen 547 RDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGA 590 (731)
T ss_pred chhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhc
Confidence 99999999999999999999999999999998888777776643
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.1e-55 Score=374.82 Aligned_cols=353 Identities=42% Similarity=0.736 Sum_probs=319.9
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEcCcHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQ---TPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
|+.+...|+..|+|+|.+.++.+++|++.|-.+-||||||++|.+|++...+++ .+..++.|+..||+||+++|+.|
T Consensus 182 L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQ 261 (610)
T KOG0341|consen 182 LRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQ 261 (610)
T ss_pred HHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHH
Confidence 356778999999999999999999999999999999999999999999887764 34567789999999999999999
Q ss_pred HHHHHHHHhcc-----CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC
Q 013962 78 IEKEVKALSRS-----LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~ 152 (433)
+++.+..++.. .+.++...+.||....++.+.+..+.+|+|+||++|.+++..+...+.-..++.+|||+++.+.
T Consensus 262 t~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDm 341 (610)
T KOG0341|consen 262 THDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDM 341 (610)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhc
Confidence 99999888754 3568889999999999999999999999999999999999998888888999999999999999
Q ss_pred CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHH
Q 013962 153 GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 232 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (433)
+|...++.+...++...|.+++|||+|..++.++..-+-.|+.+.++......-++.+.+.++..+.++-.+++-+.+
T Consensus 342 GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK-- 419 (610)
T KOG0341|consen 342 GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK-- 419 (610)
T ss_pred cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc--
Confidence 999999999999999999999999999999999999999999999999888888877777777777776666555433
Q ss_pred HhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 233 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 233 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
..+|+||||..+..+..+.++|--.|..++.+||+-.+++|...++.|+.|+.+|||||++++.|+|+|++.
T Consensus 420 --------T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iq 491 (610)
T KOG0341|consen 420 --------TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQ 491 (610)
T ss_pred --------CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccch
Confidence 236799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccc-cHHHHHHHHHHhhh
Q 013962 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIVD 363 (433)
Q Consensus 313 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-d~~~~~~~~~~~~~ 363 (433)
+||+||.|.....|+||+||+||.|..|.+.+|+.+. +...+-.++..+.+
T Consensus 492 HVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~E 543 (610)
T KOG0341|consen 492 HVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQE 543 (610)
T ss_pred hhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 55666666665544
No 28
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.6e-52 Score=394.59 Aligned_cols=326 Identities=20% Similarity=0.327 Sum_probs=255.0
Q ss_pred ccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
+.+||+.|||+|.++++.+++++++++.+|||+|||++|++|++.. ++.+||++|+++|+.|+++.+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999998764 66799999999999999998876
Q ss_pred HhccCCCceEEEEECCCCHHHHHH----HhhCCCcEEEeccHHHHHHH-HcCCC-CCCCccEEEEcccchhccCC--CHH
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHL-QQGNT-SLSRVSFVILDEADRMLDMG--FEP 156 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~-~~~~~-~~~~~~~vIiDE~h~~~~~~--~~~ 156 (433)
+ ++....+.++....+... ...+..+|+++||+.+.... ..... ...++++|||||||++.+|+ +..
T Consensus 74 ~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 74 S-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 4 577777888776553332 22456899999999874321 00111 45679999999999999876 455
Q ss_pred HHHH---HHhhCCCCCcEEEEEeecchHHHHHHHHhcC--CCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHH
Q 013962 157 QIRE---VMQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 231 (433)
Q Consensus 157 ~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
.+.. +...+ +..+++++|||++......+...+. .+..+.... ..+++........ ......+...+.+
T Consensus 149 ~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v~~~~-~~~~~~l~~~l~~- 222 (470)
T TIGR00614 149 DYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEVRRKT-PKILEDLLRFIRK- 222 (470)
T ss_pred HHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEEEeCC-ccHHHHHHHHHHH-
Confidence 5444 33444 4678999999999887776666543 343333221 1233322222211 1222333333322
Q ss_pred HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC
Q 013962 232 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV 311 (433)
Q Consensus 232 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 311 (433)
..++..+||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 223 -------~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V 295 (470)
T TIGR00614 223 -------EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDV 295 (470)
T ss_pred -------hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccc
Confidence 1334557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 312 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 312 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
++||++++|.|...|+||+||+||.|.+|.|++++++.|....+.+..
T Consensus 296 ~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 296 RFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred eEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877666543
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.6e-51 Score=401.88 Aligned_cols=325 Identities=22% Similarity=0.320 Sum_probs=253.5
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+|+..|||.|.++|+++++|+++++.+|||+|||++|++|++.. ++.+|||+|+++|+.++...+...
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLiSLmqDQV~~L~~~ 523 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLVSLIQDQIMNLLQA 523 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999865 667999999999998766666552
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhh------CCCcEEEeccHHHHH--HHHcC---CCCCCCccEEEEcccchhccCC-
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLD--HLQQG---NTSLSRVSFVILDEADRMLDMG- 153 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ivv~T~~~l~~--~~~~~---~~~~~~~~~vIiDE~h~~~~~~- 153 (433)
++....+.++....+....+. +.++|+|+||+++.. .+.+. ......+.+|||||||++.+|+
T Consensus 524 -----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh 598 (1195)
T PLN03137 524 -----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH 598 (1195)
T ss_pred -----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc
Confidence 688888999888766554332 568999999999852 11211 1123448899999999999987
Q ss_pred -CHHHHHHH---HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhh-HHHHHHHH
Q 013962 154 -FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK-VDRLLALL 228 (433)
Q Consensus 154 -~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (433)
|++.+..+ ...+ +..+++++|||++..+...+...+.......... ....+++...+ +....+ ...+...+
T Consensus 599 DFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL~y~V--v~k~kk~le~L~~~I 674 (1195)
T PLN03137 599 DFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNLWYSV--VPKTKKCLEDIDKFI 674 (1195)
T ss_pred chHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccceEEEE--eccchhHHHHHHHHH
Confidence 66666543 3334 4678999999999988887766654332222221 12223332222 222211 12222222
Q ss_pred HHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCccc
Q 013962 229 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 308 (433)
.. .....+.||||.++..++.+++.|...++.+..|||+|++.+|..+++.|..|+++|||||+++++|||+
T Consensus 675 ~~--------~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk 746 (1195)
T PLN03137 675 KE--------NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK 746 (1195)
T ss_pred Hh--------cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc
Confidence 11 1223458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 309 p~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|++++||+++.|.|...|+|++||+||.|.++.|+++|+..|......+.
T Consensus 747 PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 747 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877665554
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-53 Score=378.00 Aligned_cols=371 Identities=32% Similarity=0.493 Sum_probs=298.9
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCC--------CCCCCceEEEEcCc
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--------GRGDGPLALVLAPT 71 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~--------~~~~~~~~lvl~P~ 71 (433)
|++|...||+.|+++|...++++..+ .+++-.|.||||||++|-+|++..+.+.... .+...+..||++||
T Consensus 193 L~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPT 272 (731)
T KOG0347|consen 193 LRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPT 272 (731)
T ss_pred HHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecCh
Confidence 57899999999999999999999988 6899999999999999999999955543211 12223459999999
Q ss_pred HHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC---CCCCccEEEEcccch
Q 013962 72 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT---SLSRVSFVILDEADR 148 (433)
Q Consensus 72 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~---~~~~~~~vIiDE~h~ 148 (433)
++|+.|+.+-+...... .++.+..++||.....+.+.++..++|||+||++||.++..... .+.++.++|+||+++
T Consensus 273 RELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDR 351 (731)
T KOG0347|consen 273 RELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADR 351 (731)
T ss_pred HHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHH
Confidence 99999999999998875 58999999999999999999999999999999999999987655 456789999999999
Q ss_pred hccCCCHHHHHHHHhhCC-----CCCcEEEEEeecchHHHHHHHH-----------------------hcCCCeEEEecC
Q 013962 149 MLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEIEALAQE-----------------------YLTDPVQVKVGK 200 (433)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~-----~~~~~i~~SAT~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 200 (433)
|+..++...+..++..+. ...|.+.+|||+.-........ +...|..+....
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 999999999999988875 3468999999984322211111 111222222211
Q ss_pred cCCCCCCceEEEEEcCchhhHHHHHHHHHHHHH------hhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecC
Q 013962 201 VSSPTANVIQILEKVSENEKVDRLLALLVEEAF------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 274 (433)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 274 (433)
...-...+.+....+.. ....-..-.+++|||||+++.+.++.-.|+..+++...+|+
T Consensus 432 ----------------q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 432 ----------------QSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred ----------------chhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 11112222222222110 00001112367999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH
Q 013962 275 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV 354 (433)
Q Consensus 275 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~ 354 (433)
.|.+++|...+++|++..-.|||||+++++|+|||++.|||||-.|.+...|+||.||++|++..|..+.++.|.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccchhhhHHHHHHHHHHHH
Q 013962 355 AQIKKAIVDAESGNAVAFATGKVARRKEREAAAA 388 (433)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (433)
..+...+...++...++....-+...++|...+.
T Consensus 576 ~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ 609 (731)
T KOG0347|consen 576 KKLCKTLKKKEDLPIFPVETDIMDALKERVRLAR 609 (731)
T ss_pred HHHHHHHhhccCCCceeccHHHHHHHHHHHHHHH
Confidence 9999999988888877776665555555554443
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-50 Score=400.35 Aligned_cols=340 Identities=23% Similarity=0.281 Sum_probs=259.3
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++...||.+|+++|.++++.+++|+|+++.+|||||||++|++|+++.+.... +.++|||+||++|+.|+.+.
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKALAADQLRA 100 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999987642 67899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC----CCCCCCccEEEEcccchhccCCCHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~----~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
++.+. ..++++..+.|+..... ...+..+++|+++||+.+...+... ...++++++||+||+|.+.+. +...
T Consensus 101 l~~l~--~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg~~ 176 (742)
T TIGR03817 101 VRELT--LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGSH 176 (742)
T ss_pred HHHhc--cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cHHH
Confidence 99986 23688888888877543 3455567899999999986433321 123678999999999998653 5555
Q ss_pred HHHHH-------hhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc-------------
Q 013962 158 IREVM-------QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------------- 217 (433)
Q Consensus 158 ~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 217 (433)
+..++ ...+..+|++++|||+++... .+..++..+..+. .....+... .......+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPRGA-RTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCcCc-eEEEEecCCccccccccccccc
Confidence 44443 334567899999999988754 5667777665442 222221111 111111111
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC--------CCceeeecCCCCHHHHHHHHHHHh
Q 013962 218 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRESALRDFR 289 (433)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~ 289 (433)
..........+.... ..+.++||||+|+..++.++..|... +..+..+||++++++|..++++|+
T Consensus 254 ~~~~~~~~~~l~~l~-------~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 254 RSASAEAADLLADLV-------AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred cchHHHHHHHHHHHH-------HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH
Confidence 000011111121111 11356999999999999999988763 567889999999999999999999
Q ss_pred cCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec--cccHHHHHHHHHHh
Q 013962 290 NGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT--DRDMLLVAQIKKAI 361 (433)
Q Consensus 290 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~--~~d~~~~~~~~~~~ 361 (433)
+|++++||||+++++|||+|++++||+++.|.+...|+||+||+||.|..|.++++.. +.|.......++.+
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998886 34554555444433
No 32
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5e-50 Score=391.16 Aligned_cols=322 Identities=23% Similarity=0.343 Sum_probs=251.8
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+||.+|+|+|+++++.+++++++++.+|||+|||++|++|++.. .+.+||++|+++|+.|+++.+..+
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv~~l~~~ 88 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQVDQLLAN 88 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999998865 567999999999999999988874
Q ss_pred hccCCCceEEEEECCCCHHHHHHH----hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHH
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 159 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~ 159 (433)
++....+.++......... ..+..+++++||+++............++++|||||||++.+|+ +.+.+.
T Consensus 89 -----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 89 -----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred -----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 5677777777665544322 23568899999999864322222334568999999999999876 454443
Q ss_pred ---HHHhhCCCCCcEEEEEeecchHHHHHHHHhc--CCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 160 ---EVMQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 160 ---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
.+...+ +..+++++|||++......+...+ .+|....... ..+++...+ .........+...+..
T Consensus 164 ~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl~~~v--~~~~~~~~~l~~~l~~---- 233 (607)
T PRK11057 164 ALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIRYTL--VEKFKPLDQLMRYVQE---- 233 (607)
T ss_pred HHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcceeee--eeccchHHHHHHHHHh----
Confidence 334444 467899999999988766555543 3343322211 122222111 1222222333332211
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
..+.++||||++++.++.+++.|...++.+..+|++|++++|..+++.|+.|+++|||||+++++|+|+|++++|
T Consensus 234 -----~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 234 -----QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred -----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 344669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|+++.|.|...|+|++||+||.|.+|.|++++++.|....+.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877665543
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-50 Score=384.22 Aligned_cols=352 Identities=47% Similarity=0.742 Sum_probs=328.3
Q ss_pred cccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
++.+||.+|+|+|.+||++|++|+++|..+.||||||+.|++|++.+...+++...+.|+.++|++||++|+.|+.+++.
T Consensus 380 lkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~ 459 (997)
T KOG0334|consen 380 LKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVR 459 (997)
T ss_pred HHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCC---ccEEEEcccchhccCCCHHHHHH
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR---VSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~---~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+|... .++.+++++|+.....+...+..++.|+|+||+++.+.+..+.-.+.+ ..++|+||+++|++.+|.+....
T Consensus 460 kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 460 KFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 99987 489999999999999999999999999999999999998877655555 45999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC-chhhHHHHHHHHHHHHHhhhhcC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
|++.+++..|++++|||.+..++.+....+..|+.+.+.........+.+.+..+. ..+++..+.+++.....
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------ 612 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE------ 612 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh------
Confidence 99999999999999999999999999999999999888888888888888888888 88999999999887754
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
..++||||.+.+.|..+.+.|.+.++.+..+||+.+..+|..+++.|+++.+.+||+|+.+++|+|++.+..||+|+.
T Consensus 613 --~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 613 --DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred --cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc
Confidence 466999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhh
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDA 364 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~ 364 (433)
|....+|++|.||+||.|..|.+++|+.+.+......|.+++...
T Consensus 691 pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~ 735 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELS 735 (997)
T ss_pred chhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhc
Confidence 999999999999999999999999999998888888898888443
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.4e-49 Score=384.97 Aligned_cols=322 Identities=24% Similarity=0.371 Sum_probs=256.1
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+||++|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++.++|++|+++|+.|+++.++.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999999999999998754 567899999999999999988874
Q ss_pred hccCCCceEEEEECCCCHHHHHHH----hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHH
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 159 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~ 159 (433)
++.+..+.++.+..+.... ..+..+|+++||+++............++++|||||||++.+|+ +++.+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 5777888888776554432 34678999999999865443333445679999999999999876 555544
Q ss_pred HH---HhhCCCCCcEEEEEeecchHHHHHHHHhcCC--CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 160 EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 160 ~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
.+ ...++ ..+++++|||++......+...+.. +..+.. ....+++..... ....+...+...+..
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl~~~v~--~~~~~~~~l~~~l~~---- 221 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNLRFSVV--KKNNKQKFLLDYLKK---- 221 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCcEEEEE--eCCCHHHHHHHHHHh----
Confidence 44 44454 4459999999998888777766643 322221 112223322222 222333333333322
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
..+.++||||+++..++.+++.|...++++..+|++|+.++|..+++.|.+|+++|||||+++++|+|+|++++|
T Consensus 222 -----~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 222 -----HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred -----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 124569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|+++.|.|...|+|++||+||.|.++.|++++++.|....+.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876655543
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-48 Score=340.06 Aligned_cols=347 Identities=29% Similarity=0.427 Sum_probs=278.5
Q ss_pred ccccCCCCCCcHHHHHHHHHhhc---------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALS---------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~---------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
.+..++++.+.|+|...++.++. .+++.|.+|||||||++|.+|+++.+.+.+ -+.-+++||+|+++
T Consensus 151 ~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 151 LLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEEeeHHH
Confidence 46788999999999999999862 478999999999999999999999987742 23588999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCC-----CcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccc
Q 013962 74 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-----VSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEAD 147 (433)
Q Consensus 74 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h 147 (433)
|+.|+++.|..+.... ++.++.+.|..+.+.....+.+. .+|+|+||++|.+++.+ ..+.+.+++++|||||+
T Consensus 227 L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH
Confidence 9999999999998764 78899999988877766666432 38999999999999984 56778999999999999
Q ss_pred hhccCCCHHHHHHHHhhCCC----------------------------------CCcEEEEEeecchHHHHHHHHhcCCC
Q 013962 148 RMLDMGFEPQIREVMQNLPD----------------------------------KHQTLLFSATMPVEIEALAQEYLTDP 193 (433)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~ 193 (433)
++++..|..++-.++..++. ....+.+|||+......+....+..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 99988777776555443321 12356778887666666666666666
Q ss_pred eEEEec----CcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHH----HC
Q 013962 194 VQVKVG----KVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV----AE 265 (433)
Q Consensus 194 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~----~~ 265 (433)
....+. .....+..+.+.........+...+...+.. ....++|+|+++.+.+.+++..|+ ..
T Consensus 386 rl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~---------~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 386 RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS---------NKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred ceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH---------hhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 433332 2333444455555544444555555555543 344669999999999999999887 23
Q ss_pred CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEE
Q 013962 266 GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345 (433)
Q Consensus 266 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 345 (433)
..++..+.|.++.+.|...++.|..|++++|||++++++|+|+.++++||+||+|.+...|+||+||++|+|+.|.++.+
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHhhh
Q 013962 346 YTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 346 ~~~~d~~~~~~~~~~~~~ 363 (433)
....+...+..+.+....
T Consensus 537 l~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred eccccchHHHHHHHHhcc
Confidence 999888777766555443
No 36
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-47 Score=355.24 Aligned_cols=325 Identities=25% Similarity=0.356 Sum_probs=262.7
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
-+|+..+|+-|.++|..+++++++++.+|||.|||+||.+|++-. .+.+|||+|..+|...+.+.+...
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999877 557999999999999988888874
Q ss_pred hccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHH
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 159 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~ 159 (433)
++.+..+.+..+.++....+ .+..++++.+||+|..-...+...-..+.+++|||||+++.|| |++.+.
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 78888888887777666544 3458999999999843332222224568899999999999997 777766
Q ss_pred HH---HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCe--EEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 160 EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV--QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 160 ~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
.+ ...++ +..++++|||.++.+...+...+.... .+.. ....+++...+.... .....+. .+.+
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~--~~~~q~~-fi~~---- 224 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKG--EPSDQLA-FLAT---- 224 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhcc--cHHHHHH-HHHh----
Confidence 55 44455 778999999999999988887765443 2222 222333332222222 1111111 2221
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
.......+.||||.|+..++.+++.|...|+.+..||++|+.++|..+.++|..++++|+|||.++++|||-|+++.|
T Consensus 225 --~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 225 --VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred --hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 112444568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
||++.|.|.+.|+|-+|||||+|.+..|++++++.|......+.+
T Consensus 303 iH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred EEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHH
Confidence 999999999999999999999999999999999999877665544
No 37
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-47 Score=328.26 Aligned_cols=344 Identities=37% Similarity=0.636 Sum_probs=309.6
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
|++|+.+||.+|+.+|+.|+..+..|.++.+.+++|+|||.++..+++..+.... ....++++.|+++|+.|...
T Consensus 38 Lrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-----ke~qalilaPtreLa~qi~~ 112 (397)
T KOG0327|consen 38 LRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-----KETQALILAPTRELAQQIQK 112 (397)
T ss_pred HhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-----HHHHHHHhcchHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999988864322 36779999999999999998
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHH-hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSE-LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIR 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~ 159 (433)
....++... +..+..+.|+......... ....+.|+++||+++++.+.........+.+.|+||++.++..++...+.
T Consensus 113 v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~ 191 (397)
T KOG0327|consen 113 VVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIY 191 (397)
T ss_pred HHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHH
Confidence 888877654 6788877887776644443 34568999999999999998887777889999999999999999999999
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcC
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
.+...+++..|++++|||.|..+....+.+..+|..+...........+.+.+..+...++.+.+..... ..
T Consensus 192 ~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~------- 263 (397)
T KOG0327|consen 192 DIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RV------- 263 (397)
T ss_pred HHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hh-------
Confidence 9999999999999999999999999999999999999998888777888888888888887777766665 21
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
...+||||+++.+..+...|.+.+..+..+|+.|.+.+|..+++.|+.|..+|||.|+.+++|+|+..+..||+|+.
T Consensus 264 ---~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 264 ---TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred ---hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 23899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
|.....|++|+||+||.|.+|.++.++...|...++.+++.+
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 999999999999999999999999999998888887777554
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.1e-46 Score=378.02 Aligned_cols=335 Identities=22% Similarity=0.271 Sum_probs=242.9
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-CCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+|.+|+|+|.+|++.+++++|+++.+|||||||++|++|++..+....... ..++.++||++|+++|+.|+++.+..
T Consensus 27 ~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 27 KEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred HHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999887532211 13467899999999999999886653
Q ss_pred H-------h----ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC--CCCCccEEEEcccchhcc
Q 013962 85 L-------S----RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFVILDEADRMLD 151 (433)
Q Consensus 85 ~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~--~~~~~~~vIiDE~h~~~~ 151 (433)
. . ...+++.+...+|+.........+...++|+|+||++|..++..... .+.++++||+||+|.+.+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 2 2 12236788999999988877777777899999999999776654322 467899999999999987
Q ss_pred CCCHHHHHHH----HhhCCCCCcEEEEEeecchHHHHHHHHhcCC-----CeEEEec-CcCCCCCCceEEE-----EEcC
Q 013962 152 MGFEPQIREV----MQNLPDKHQTLLFSATMPVEIEALAQEYLTD-----PVQVKVG-KVSSPTANVIQIL-----EKVS 216 (433)
Q Consensus 152 ~~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~-----~~~~ 216 (433)
..++..+... ....+...|.+++|||+++. .......... +...... ........+.... ....
T Consensus 187 ~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~ 265 (876)
T PRK13767 187 NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTP 265 (876)
T ss_pred CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccc
Confidence 6655544333 33334678999999999753 2222222111 1111111 1111110000000 0011
Q ss_pred chhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC------CCceeeecCCCCHHHHHHHHHHHhc
Q 013962 217 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQSDRESALRDFRN 290 (433)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~ 290 (433)
.......+...+.+.. ..++++||||+++..|+.++..|... +..+..+||+++.++|..+++.|++
T Consensus 266 ~~~~~~~l~~~L~~~i-------~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~ 338 (876)
T PRK13767 266 AEEISEALYETLHELI-------KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR 338 (876)
T ss_pred cchhHHHHHHHHHHHH-------hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc
Confidence 1111122222222221 12356999999999999999999873 4678999999999999999999999
Q ss_pred CCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCC-CCceeEEEEecc
Q 013962 291 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG-GSMGQATSFYTD 348 (433)
Q Consensus 291 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~ 348 (433)
|.++|||||+++++|+|+|++++||+++.|.+...|+||+||+||. |..+.+.++...
T Consensus 339 G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 339 GELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred CCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999987 444455555443
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8.9e-48 Score=348.66 Aligned_cols=343 Identities=29% Similarity=0.481 Sum_probs=300.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+|...+|..|+++|..||+.++.+-++||++..|+|||++|...+++.+... ....+.+|++||++++-|+.+.
T Consensus 38 ~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~~~q~~Iv~PTREiaVQI~~t 112 (980)
T KOG4284|consen 38 LGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SSHIQKVIVTPTREIAVQIKET 112 (980)
T ss_pred HHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cCcceeEEEecchhhhhHHHHH
Confidence 46778899999999999999999999999999999999999988888876543 3478899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~~ 160 (433)
+..++..+.++++.++.||+........+ ..++|+|+||+++..++.....+++.++++|+|||+.+.+ ..|...+..
T Consensus 113 v~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 113 VRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 99999988999999999999876655555 4578999999999999999999999999999999999998 558899999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
|+..+|...|++.+|||-|.++.+.+..++.+|..+...........+.+++..+......-..++...+.. ......-
T Consensus 192 ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L-~~vf~~i 270 (980)
T KOG4284|consen 192 IINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKL-THVFKSI 270 (980)
T ss_pred HHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHH-HHHHhhC
Confidence 999999999999999999999999999999999999988888777788888777655433222222222211 1112224
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
|....||||+....|+-++..|...|+.|..+.|.|++++|..+++.++.-.++|||+|+..++|||-|+++.||+.|+|
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p 350 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP 350 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccH
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~ 351 (433)
.+...|.||+|||||+|..|.+++|+.....
T Consensus 351 ~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 351 ADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999876543
No 40
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-47 Score=322.55 Aligned_cols=343 Identities=32% Similarity=0.513 Sum_probs=292.2
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
|++|+.++|++|+.+|+.|++.++.+ ++.|.++..|+|||.+|.+.++....-.. .-++++.|+|+++|+.|+
T Consensus 102 lkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~~PQ~iCLaPtrELA~Q~ 176 (477)
T KOG0332|consen 102 LKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----VVPQCICLAPTRELAPQT 176 (477)
T ss_pred HhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----cCCCceeeCchHHHHHHH
Confidence 68899999999999999999999964 68999999999999999998888765433 267799999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhccC-CCHH
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDM-GFEP 156 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~~-~~~~ 156 (433)
.+.+.+..++. ++.......+.....-.. =...|+++||+.+.++... ....+..+..+|+|||+.+.+. ++..
T Consensus 177 ~eVv~eMGKf~-~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D 252 (477)
T KOG0332|consen 177 GEVVEEMGKFT-ELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQD 252 (477)
T ss_pred HHHHHHhcCce-eeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccc
Confidence 99999988775 677777665552111111 1247999999999998877 6677888999999999999864 5888
Q ss_pred HHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc-hhhHHHHHHHHHHHHHhh
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 235 (433)
.-..+...++++.|++++|||....+..++...+.++..+.+........++.+++..+.. ..+...+.+......
T Consensus 253 ~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~t--- 329 (477)
T KOG0332|consen 253 QSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLT--- 329 (477)
T ss_pred cchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhh---
Confidence 8888999999999999999999999999999999999999999888889999999888876 455566555332211
Q ss_pred hhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE
Q 013962 236 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 315 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 315 (433)
-+..||||.++..+..+++.|.+.|..+..+||+|...+|..+++.|+.|..+|||+|+++++|+|++.+..||
T Consensus 330 ------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 330 ------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV 403 (477)
T ss_pred ------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE
Confidence 14489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------ChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHHh
Q 013962 316 NLDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAI 361 (433)
Q Consensus 316 ~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~~ 361 (433)
+||.|. ++..|+||+||+||+|+.|.++-++...+ ......|++..
T Consensus 404 NydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 404 NYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred ecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 999995 78999999999999999999999887654 44555555544
No 41
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-48 Score=333.27 Aligned_cols=347 Identities=38% Similarity=0.562 Sum_probs=316.1
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++|...||+.|+|.|++.++.++++++++--+-||||||.++++|+++.+.... ..|.++++++|+++|+.|..+
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~RalilsptreLa~qtlk 108 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALILSPTRELALQTLK 108 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceeeccCcHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999988753 237899999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.++.+.+.. ++..+++.|+...++++..+..+++|+++||+++.+..-.-...++.+.|||+||+++++..+|...+.+
T Consensus 109 vvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e 187 (529)
T KOG0337|consen 109 VVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHE 187 (529)
T ss_pred HHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHH
Confidence 999988764 7899999999999999999999999999999999777665556788999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
++..++...|.++||||+|..+....+..+.+|..+...............+..+...++...++..+.....
T Consensus 188 ~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~------- 260 (529)
T KOG0337|consen 188 ILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK------- 260 (529)
T ss_pred HHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc-------
Confidence 9999999999999999999999999999999999999887777777777777888888888777777655432
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
..+++||+++..+++.+...|...++.+..++|.+.+.-|...+..|..++..+||.|+.+++|+|+|..+.||+|+.|
T Consensus 261 -~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 261 -DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred -ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCC
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHH
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKA 360 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~ 360 (433)
.+...|++|+||+.|.|..|.+|.++.+.|....-.+.-.
T Consensus 340 ~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred CCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 9999999999999999999999999999887776666543
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.3e-45 Score=365.19 Aligned_cols=311 Identities=19% Similarity=0.223 Sum_probs=243.1
Q ss_pred cCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
.++| +||+.|.+|++.++++ .+.++++|||+|||.+|+.+++..+.. +.+++|++||++|+.|++
T Consensus 447 ~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 447 SFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLVPTTLLAQQHF 517 (926)
T ss_pred hCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEeCcHHHHHHHH
Confidence 4688 5999999999999974 689999999999999999999887755 788999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHH---h-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 155 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~ 155 (433)
+.+++++... ++.+..+.|+....+.... + .++++|+|+||..+ .....+.++++|||||+|++.
T Consensus 518 ~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg----- 586 (926)
T TIGR00580 518 ETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG----- 586 (926)
T ss_pred HHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc-----
Confidence 9999988765 5788888887765444332 2 24689999999533 234567889999999999853
Q ss_pred HHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhh
Q 013962 156 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (433)
......+..++...++++|||||.+...........++..+..... ....+...+..... ..+...+....
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~----~~i~~~i~~el--- 657 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDP----ELVREAIRREL--- 657 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCH----HHHHHHHHHHH---
Confidence 2344556667778899999999987766555445555554443221 11223333322211 11122222221
Q ss_pred hhcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcE
Q 013962 236 EKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH 313 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 313 (433)
..+++++|||++++.++.+++.|++. +.++..+||+|++.+|..++++|.+|+++|||||+++++|+|+|++++
T Consensus 658 ----~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 658 ----LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred ----HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 22467999999999999999999985 788999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-ChhHHHhhcccCCCCCCceeEEEEeccc
Q 013962 314 VVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDR 349 (433)
Q Consensus 314 Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 349 (433)
||+++.+. +..+|+|++||+||.|..|.|++++.+.
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99998864 6779999999999999999999998654
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-46 Score=374.21 Aligned_cols=326 Identities=23% Similarity=0.321 Sum_probs=242.8
Q ss_pred cccccCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++...||.+|+|+|.+|++. +.+++|+++++|||||||++|.++++..+.. +.+++|++|+++|+.|+++
T Consensus 14 ~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 14 EFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYIVPLRALASEKFE 85 (737)
T ss_pred HHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEEeChHHHHHHHHH
Confidence 356678999999999999998 6789999999999999999999999988753 7789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.++.+.. . ++++..++|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.+.+++..+..
T Consensus 86 ~~~~~~~-~-g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~ 160 (737)
T PRK02362 86 EFERFEE-L-GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEV 160 (737)
T ss_pred HHHHhhc-C-CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHH
Confidence 9998653 2 6889999998754321 224579999999999888876656678899999999999988777777776
Q ss_pred HHhhC---CCCCcEEEEEeecchHHHHHHHHhcCCCe--------EEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHH
Q 013962 161 VMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPV--------QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLV 229 (433)
Q Consensus 161 ~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (433)
++..+ .+..|++++|||+++. .... .|+.... .+..................+....+ ......+.
T Consensus 161 il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 237 (737)
T PRK02362 161 TLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVL 237 (737)
T ss_pred HHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHH
Confidence 65544 4678999999999753 2222 3332211 11000000000000000000110011 12222222
Q ss_pred HHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC------------------------------------Cceeeec
Q 013962 230 EEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------------------LHAVALH 273 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~~ 273 (433)
+.. ..++++||||+++..|+.++..|.... ..+..+|
T Consensus 238 ~~~-------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 238 DTL-------EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHH-------HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 211 234669999999999998888875431 3578899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----cc-----CCCChhHHHhhcccCCCCCCc--eeE
Q 013962 274 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-----LPKTVEDYVHRIGRTGRGGSM--GQA 342 (433)
Q Consensus 274 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~--g~~ 342 (433)
+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. |+ .|.+..+|.||+|||||.|.+ |.+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ 390 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEA 390 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999996 55 578999999999999999875 888
Q ss_pred EEEecccc
Q 013962 343 TSFYTDRD 350 (433)
Q Consensus 343 ~~~~~~~d 350 (433)
++++...+
T Consensus 391 ii~~~~~~ 398 (737)
T PRK02362 391 VLLAKSYD 398 (737)
T ss_pred EEEecCch
Confidence 88886543
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-47 Score=341.64 Aligned_cols=358 Identities=35% Similarity=0.527 Sum_probs=297.7
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+.+...+|..|+|.|.+|++.++.+++++.++|||+|||+.|.+|++.++..........|-+++|+.|+++|+.|++.+
T Consensus 149 ~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re 228 (593)
T KOG0344|consen 149 ENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYRE 228 (593)
T ss_pred HhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999876533345588999999999999999999
Q ss_pred HHHHh--ccCCCceEEEEECCCC-HHHHHHHhhCCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccC-CCH
Q 013962 82 VKALS--RSLDSFKTAIVVGGTN-IAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM-GFE 155 (433)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~-~~~ 155 (433)
+.++. ... ++.......... ...........++|+++||-++...+.... ..+..+.++|+||++.+.+. .|.
T Consensus 229 ~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~ 307 (593)
T KOG0344|consen 229 MRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFV 307 (593)
T ss_pred HHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHH
Confidence 99987 222 233322222211 111111122347999999999988887654 57888999999999999988 788
Q ss_pred HHHHHHHhhCCC-CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC-chhhHHHHHHHHHHHHH
Q 013962 156 PQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAF 233 (433)
Q Consensus 156 ~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (433)
..+..+++.+.. ..++-++|||.+..+++++.....++..+.++........+.+-..++. ...+..++...+..
T Consensus 308 ~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~--- 384 (593)
T KOG0344|consen 308 EQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVAS--- 384 (593)
T ss_pred HHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhc---
Confidence 888899888754 4566789999999999999999999999988887777667776665554 45566666555544
Q ss_pred hhhhcCCCCCeEEEEEeccccHHHHHHHH-HHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 234 LAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 234 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
.-.+|+|||+.+.+.|..+...| .-.++.+..+||..++.+|...+++|+.|++.|||||+++++|+|+.+++
T Consensus 385 ------g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn 458 (593)
T KOG0344|consen 385 ------GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVN 458 (593)
T ss_pred ------cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcc
Confidence 24578999999999999999999 56689999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhccccccc
Q 013962 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGNAVA 371 (433)
Q Consensus 313 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 371 (433)
+||+||.|.+..+|++|+||+||.|+.|.+++||+..|...++.+.+.+.. ++..++
T Consensus 459 ~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~--sG~evp 515 (593)
T KOG0344|consen 459 LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ--SGCEVP 515 (593)
T ss_pred eEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH--cCCcch
Confidence 999999999999999999999999999999999999999988888776654 444443
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-44 Score=367.97 Aligned_cols=312 Identities=19% Similarity=0.188 Sum_probs=245.5
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
..++| .||+.|.+|++.++++ .+.+++++||+|||.+|+.+++..+.. +.+++|++||++|+.|+
T Consensus 595 ~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT~eLA~Q~ 665 (1147)
T PRK10689 595 DSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPTTLLAQQH 665 (1147)
T ss_pred HhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHH
Confidence 46778 7999999999999976 789999999999999998777665433 88999999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
++.+.+.+... ++.+..+.++.+..++...+ .++.+|+|+||+.+. ....+.+++++||||+|++..
T Consensus 666 ~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~--- 736 (1147)
T PRK10689 666 YDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV--- 736 (1147)
T ss_pred HHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch---
Confidence 99999877654 57888888887776655443 246899999997542 334567899999999999732
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 155 EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
.....+..++.+.+++++||||.+.........+.++..+...... ...+............ ...+....
T Consensus 737 --~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~----k~~il~el-- 806 (1147)
T PRK10689 737 --RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVV----REAILREI-- 806 (1147)
T ss_pred --hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHH----HHHHHHHH--
Confidence 2345566778889999999999888777777777777666543221 2233333333222111 11121111
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
..+++++||||+++.++.+++.|.+. +..+..+||+|++.+|..++.+|++|+++|||||+++++|+|+|+++
T Consensus 807 -----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 807 -----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred -----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 12356999999999999999999987 77899999999999999999999999999999999999999999999
Q ss_pred EEEEccCC-CChhHHHhhcccCCCCCCceeEEEEeccc
Q 013962 313 HVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDR 349 (433)
Q Consensus 313 ~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 349 (433)
+||..+.. .+..+|+|++||+||.|..|.|++++...
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99966543 46778999999999999999999988653
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.2e-45 Score=362.27 Aligned_cols=325 Identities=21% Similarity=0.291 Sum_probs=244.6
Q ss_pred cccccCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+.+...|+.+|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +.++|+++|+++|+.|+++
T Consensus 14 ~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 14 RVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYLVPLKALAEEKYR 86 (720)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEEeChHHHHHHHHH
Confidence 356789999999999999986 78899999999999999999999999887653 6789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.+..+.. .++.+..++|+...... ...+++|+|+||+++..++.+....+.++++||+||+|.+.+.+++..+..
T Consensus 87 ~~~~~~~--~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~ 161 (720)
T PRK00254 87 EFKDWEK--LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEM 161 (720)
T ss_pred HHHHHhh--cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHH
Confidence 9987643 26889999998764332 225689999999999888876666678899999999999988888889999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceE----EEEEcCch--hh-HHHHHHHHHHHHH
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ----ILEKVSEN--EK-VDRLLALLVEEAF 233 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~-~~~~~~~~~~~~~ 233 (433)
++..+....|++++|||+++. ..... |+....... ...+.+.... ........ .+ .......+.+..
T Consensus 162 il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 235 (720)
T PRK00254 162 ILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVS---DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV- 235 (720)
T ss_pred HHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccC---CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH-
Confidence 999988889999999999753 34443 444322111 1111110000 01111111 01 111111111111
Q ss_pred hhhhcCCCCCeEEEEEeccccHHHHHHHHHHC---------------------------------CCceeeecCCCCHHH
Q 013962 234 LAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLHAVALHGGRNQSD 280 (433)
Q Consensus 234 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~~ 280 (433)
..+.++||||+++..|+.++..|... ...+..+|++|++++
T Consensus 236 ------~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~e 309 (720)
T PRK00254 236 ------KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTE 309 (720)
T ss_pred ------HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHH
Confidence 12356999999999998877666321 235889999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE-------ccCC-CChhHHHhhcccCCCCC--CceeEEEEecccc
Q 013962 281 RESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-------LDLP-KTVEDYVHRIGRTGRGG--SMGQATSFYTDRD 350 (433)
Q Consensus 281 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~-------~~~~-~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~d 350 (433)
|..+++.|++|.++|||||+++++|+|+|++++||. ++.+ .+..+|.||+|||||.| ..|.+++++...+
T Consensus 310 R~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 310 RVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999999999999999999999984 3332 35679999999999975 4588888887544
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2e-43 Score=348.35 Aligned_cols=310 Identities=23% Similarity=0.301 Sum_probs=235.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
.++| +||+.|++|++.+.++ .+.++++|||||||++|+++++..+.. +.+++|++||++|+.|++
T Consensus 257 ~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 257 SLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPTEILAEQHY 327 (681)
T ss_pred hCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEeccHHHHHHHH
Confidence 4667 6999999999999875 379999999999999999999887654 788999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHH---h-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 155 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~ 155 (433)
+.+++++... ++++..++|+......... + .+.++|+|+||+.+.+ ...+.++++||+||+|++...
T Consensus 328 ~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~--- 398 (681)
T PRK10917 328 ENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE--- 398 (681)
T ss_pred HHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH---
Confidence 9999998765 6899999999886544332 2 3469999999987743 345678999999999987432
Q ss_pred HHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhh
Q 013962 156 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (433)
....+......+++++|||||.+....... ..+...............+...+.. ......+...+.+..
T Consensus 399 --qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~---~~~~~~~~~~i~~~~--- 468 (681)
T PRK10917 399 --QRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIP---DSRRDEVYERIREEI--- 468 (681)
T ss_pred --HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeC---cccHHHHHHHHHHHH---
Confidence 223333344568899999999776544332 2332222222222212223332222 222334444444332
Q ss_pred hhcCCCCCeEEEEEecccc--------HHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 013962 236 EKSCHPFPLTIVFVERKTR--------CDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~--------~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 305 (433)
..+.+++|||+.+++ ++.+++.|... +.++..+||+|++.+|..++++|++|+++|||||+++++|
T Consensus 469 ----~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 469 ----AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred ----HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 234569999997653 45667777665 4689999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEccCCC-ChhHHHhhcccCCCCCCceeEEEEec
Q 013962 306 LDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 306 idip~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
+|+|++++||+++.|. +...++|++||+||.|..|.|++++.
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999986 57889999999999999999999995
No 48
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-43 Score=314.30 Aligned_cols=329 Identities=25% Similarity=0.283 Sum_probs=246.2
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
+..++|.||.......+.+ |+|+++|||.|||+++++.+...+... ++++|+++||+.|+.|.+..+.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhC
Confidence 3458999999999998874 899999999999999988888777664 44899999999999999999999885
Q ss_pred cCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC
Q 013962 88 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 167 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~ 167 (433)
- +.-.++.++|....++. ...|.+.+|+|+||+.+.+.+..+..++.++.++||||||+...+...-.+.+.+.....
T Consensus 84 i-p~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 84 I-PEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred C-ChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 4 45677788888776654 456677899999999999999999999999999999999998876545555555555667
Q ss_pred CCcEEEEEeecchHHHH---HHHHhcCCCeEEEecCcCCCCCCceE---EEEEc--------------------------
Q 013962 168 KHQTLLFSATMPVEIEA---LAQEYLTDPVQVKVGKVSSPTANVIQ---ILEKV-------------------------- 215 (433)
Q Consensus 168 ~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------- 215 (433)
++.+++|||||...... .+..+......+.........+.+.. .+..+
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999433222 22222222222211111110000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 216 -------------------------------------------------------------------------------- 215 (433)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (433)
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence
Q ss_pred -----------------------CchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee-e
Q 013962 216 -----------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-A 271 (433)
Q Consensus 216 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~ 271 (433)
-...|...+...+.+.. ...++.++|||++.++.++.+.+.|.+.+..+. .
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~-----~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~r 396 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQL-----EKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVR 396 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHH-----hcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeE
Confidence 00011111111111111 113346899999999999999999999987764 3
Q ss_pred ec--------CCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEE
Q 013962 272 LH--------GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343 (433)
Q Consensus 272 ~~--------~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 343 (433)
+. .+|+++++.++++.|++|+++|||||+++++|+|+|.++.||+|++..|+..++||.||+||. ..|.++
T Consensus 397 FiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~ 475 (542)
T COG1111 397 FIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVV 475 (542)
T ss_pred EeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEE
Confidence 33 479999999999999999999999999999999999999999999999999999999999998 779999
Q ss_pred EEeccccHH
Q 013962 344 SFYTDRDML 352 (433)
Q Consensus 344 ~~~~~~d~~ 352 (433)
+++...+..
T Consensus 476 vLvt~gtrd 484 (542)
T COG1111 476 VLVTEGTRD 484 (542)
T ss_pred EEEecCchH
Confidence 999887444
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.2e-43 Score=343.33 Aligned_cols=313 Identities=23% Similarity=0.291 Sum_probs=232.0
Q ss_pred cccCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
+...+| +||+.|++|++.++++ .+.++++|||||||++|+++++..+.. +.+++|++||++|+.|
T Consensus 229 ~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 229 LASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTEILAEQ 299 (630)
T ss_pred HHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHHHHHHH
Confidence 356788 7999999999999865 258999999999999999998887654 7889999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCCCHHHHHHH---h-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC
Q 013962 78 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 153 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~ 153 (433)
+++.+.+++..+ ++.+..++|+......... + .++++|+|+||+.+.+ ...+.++++||+||+|++...
T Consensus 300 ~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 300 HYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-
Confidence 999999998765 6899999999876553322 2 3568999999987753 345678999999999986432
Q ss_pred CHHHHHHHHhhCC--CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHH
Q 013962 154 FEPQIREVMQNLP--DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 231 (433)
Q Consensus 154 ~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
....+..... ..+++++|||||.+....... ..+...............+...+. .. .....+...+.+.
T Consensus 373 ---qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~--~~-~~~~~~~~~i~~~ 444 (630)
T TIGR00643 373 ---QRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLI--KH-DEKDIVYEFIEEE 444 (630)
T ss_pred ---HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEe--Cc-chHHHHHHHHHHH
Confidence 1122222222 257899999999765443322 122111111111111122222222 11 2223333333332
Q ss_pred HHhhhhcCCCCCeEEEEEeccc--------cHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 013962 232 AFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV 301 (433)
Q Consensus 232 ~~~~~~~~~~~~~~lvf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 301 (433)
. ..+.+++|||+..+ .++.+++.|... +..+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 445 l-------~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 445 I-------AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred H-------HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 2 22356999999874 355677777653 678999999999999999999999999999999999
Q ss_pred cccCcccCCCcEEEEccCCC-ChhHHHhhcccCCCCCCceeEEEEec
Q 013962 302 ASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 302 ~~~Gidip~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
+++|+|+|++++||+++.|. +...+.|++||+||.|..|.|++++.
T Consensus 518 ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999886 67899999999999999999999993
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.7e-43 Score=338.00 Aligned_cols=330 Identities=24% Similarity=0.325 Sum_probs=256.8
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.|.+|||.|.+|++.+.+|+|+|+.+|||||||+++++|++..+.........++-.+|+|+|.++|...+...+..+..
T Consensus 19 ~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 19 KFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred hcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999987423334578999999999999999999999988
Q ss_pred cCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccCCCHHHHHHH----
Q 013962 88 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREV---- 161 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~~---- 161 (433)
.+ ++.+.+-+|++...+......+.++|++||||+|.-++.... ..+.++.+|||||.|.+.+...+..+.-.
T Consensus 99 ~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL 177 (814)
T COG1201 99 EL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERL 177 (814)
T ss_pred Hc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHH
Confidence 75 788999999999988888888999999999999966654422 34788999999999999876655444333
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCC--CeEEEecCcCCCCCCceEEEEEcCc----hhhHHHHHHHHHHHHHhh
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVSE----NEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 235 (433)
....+ ..|.|++|||..+. ....+...+. +..+....... ...+. ....... ......+...+.+...
T Consensus 178 ~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k-~~~i~-v~~p~~~~~~~~~~~~~~~~~i~~~v~-- 251 (814)
T COG1201 178 RELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK-KLEIK-VISPVEDLIYDEELWAALYERIAELVK-- 251 (814)
T ss_pred HhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCC-cceEE-EEecCCccccccchhHHHHHHHHHHHh--
Confidence 33333 78999999999744 3334433333 23332222111 11111 1111111 1122223333333221
Q ss_pred hhcCCCCCeEEEEEeccccHHHHHHHHHHCC-CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 236 EKSCHPFPLTIVFVERKTRCDEVSEALVAEG-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
....+|||+||+..++.++..|+..+ ..+..+||.++.+.|..+.++|++|+.+++|||+.++-|||+-+++.|
T Consensus 252 -----~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlV 326 (814)
T COG1201 252 -----KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLV 326 (814)
T ss_pred -----hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEE
Confidence 11349999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCC-CCceeEEEEeccc
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRG-GSMGQATSFYTDR 349 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~ 349 (433)
|+++.|.++..+.||+||+|+. |....++++....
T Consensus 327 Iq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 327 IQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred EEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 9999999999999999999986 5556677666653
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-43 Score=348.76 Aligned_cols=320 Identities=20% Similarity=0.254 Sum_probs=233.2
Q ss_pred ccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
.+...+|. |+++|.++++.+.+++++++++|||||||+++.++++..+.. +.++++++|+++|+.|+++++
T Consensus 15 ~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~P~raLa~q~~~~~ 85 (674)
T PRK01172 15 LFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIVPLRSLAMEKYEEL 85 (674)
T ss_pred HHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEechHHHHHHHHHHH
Confidence 45567776 999999999999999999999999999999999999887654 678999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
.++.. .+..+...+|+...... ....++|+|+||+++...+.+....+.++++||+||+|.+.+.+++..+..++
T Consensus 86 ~~l~~--~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll 160 (674)
T PRK01172 86 SRLRS--LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVL 160 (674)
T ss_pred HHHhh--cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHH
Confidence 98643 26788888887654321 22457999999999988877766667889999999999998877777776665
Q ss_pred hh---CCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEE----EEcCchhh-HHHHHHHHHHHHHh
Q 013962 163 QN---LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL----EKVSENEK-VDRLLALLVEEAFL 234 (433)
Q Consensus 163 ~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~ 234 (433)
.. .++..|+|++|||+++. .... .|+..... . ....+.+...... ........ ...+...+.+..
T Consensus 161 ~~~~~~~~~~riI~lSATl~n~-~~la-~wl~~~~~-~--~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~-- 233 (674)
T PRK01172 161 SSARYVNPDARILALSATVSNA-NELA-QWLNASLI-K--SNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETV-- 233 (674)
T ss_pred HHHHhcCcCCcEEEEeCccCCH-HHHH-HHhCCCcc-C--CCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHH--
Confidence 43 45678999999999753 3333 34432211 0 0011111000000 00111111 011111121111
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHCC-------------------------CceeeecCCCCHHHHHHHHHHHh
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-------------------------LHAVALHGGRNQSDRESALRDFR 289 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------~~~~~~~~~~~~~~r~~~~~~f~ 289 (433)
..++++||||+++..++.++..|.... ..+..+|++++..+|..+++.|+
T Consensus 234 -----~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 234 -----NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred -----hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 234679999999999999998886531 24678999999999999999999
Q ss_pred cCCCcEEEEecccccCcccCCCcEEEEccC---------CCChhHHHhhcccCCCCCC--ceeEEEEeccc
Q 013962 290 NGSTNILVATDVASRGLDVMGVAHVVNLDL---------PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR 349 (433)
Q Consensus 290 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 349 (433)
+|.++|||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 309 ~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 309 NRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred cCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999865444 332 4578899999999999985 46677776543
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.3e-42 Score=334.07 Aligned_cols=320 Identities=18% Similarity=0.213 Sum_probs=237.1
Q ss_pred CCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.||. |+|+|.++++.+++|+ ++++.+|||||||.++.++++.. ... .....++++++|+++|+.|.++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----AKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----ccccceEEEeCchHHHHHHHHHHHHHH
Confidence 5787 9999999999999998 57888999999998665444322 111 111334555779999999999999998
Q ss_pred hccCC----------------------CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-C--------CC-
Q 013962 86 SRSLD----------------------SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-G--------NT- 133 (433)
Q Consensus 86 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~--------~~- 133 (433)
.+.+. .+++..++||.....++..+..+++|+|+|++.+...... . ..
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccch
Confidence 87552 4888999999999999888888899999996555322110 0 00
Q ss_pred --CCCCccEEEEcccchhccCCCHHHHHHHHhhC--CC---CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCC
Q 013962 134 --SLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD---KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA 206 (433)
Q Consensus 134 --~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
.+.++.++|+|||| ++.+|...+..|+..+ ++ ..|+++||||++..+......+..++....+........
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 25678999999999 5677999999999864 33 258999999999887777777776665554433333333
Q ss_pred CceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHH----
Q 013962 207 NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRE---- 282 (433)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~---- 282 (433)
.+.+. .......+...+...+..... ..++++|||||++..++.+++.|...++ ..+||+|++.+|.
T Consensus 244 ki~q~-v~v~~e~Kl~~lv~~L~~ll~------e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 244 KIVKL-VPPSDEKFLSTMVKELNLLMK------DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred ceEEE-EecChHHHHHHHHHHHHHHHh------hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 44443 233333343333333322211 2345699999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------CcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeE-EEEe
Q 013962 283 -SALRDFRN----GS-------TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA-TSFY 346 (433)
Q Consensus 283 -~~~~~f~~----g~-------~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~-~~~~ 346 (433)
.+++.|++ |. ..|||||+++++|+|++. ++||+...| ...|+||+||+||.|..+.+ ++++
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 78899987 43 679999999999999986 888887666 68999999999999885333 4444
No 53
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=8.6e-41 Score=320.98 Aligned_cols=364 Identities=19% Similarity=0.185 Sum_probs=260.0
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..++|+|.+++..+..++..++.|+||+|||++|++|++...+. +..++|++|+++|+.|+++++..++..+
T Consensus 67 lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 35678888888888777778999999999999999998777665 6679999999999999999999998876
Q ss_pred CCceEEEEECCCC---HHHHHHHhhCCCcEEEeccHHH-HHHHHcC------CCCCCCccEEEEcccchhccCC------
Q 013962 90 DSFKTAIVVGGTN---IAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLDMG------ 153 (433)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~------~~~~~~~~~vIiDE~h~~~~~~------ 153 (433)
+++++...++.. ..........+++|+|+||+.| ++++..+ ...++.+.++|+||||.++-..
T Consensus 139 -GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 139 -GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred -CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 788888776521 1112223335799999999999 6666443 2346789999999999753111
Q ss_pred ----------CHHHHHHHHhhCCC--------------------------------------------------------
Q 013962 154 ----------FEPQIREVMQNLPD-------------------------------------------------------- 167 (433)
Q Consensus 154 ----------~~~~~~~~~~~~~~-------------------------------------------------------- 167 (433)
.......+...+..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 01111111111110
Q ss_pred -------------------------------------------------------------CCcEEEEEeecchHHHHHH
Q 013962 168 -------------------------------------------------------------KHQTLLFSATMPVEIEALA 186 (433)
Q Consensus 168 -------------------------------------------------------------~~~~i~~SAT~~~~~~~~~ 186 (433)
..++.+||+|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 2356788888766555555
Q ss_pred HHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC
Q 013962 187 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 266 (433)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~ 266 (433)
..| .-..+.++...+..........+....++..++...+.+.. ..+.|+||||++++.++.+++.|.+.+
T Consensus 378 ~iY--~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-------~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 378 ETY--SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH-------ETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred HHh--CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh-------hCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 444 33344555544444444444566677778887777766543 334669999999999999999999999
Q ss_pred CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---------CCcEEEEccCCCChhHHHhhcccCCCCC
Q 013962 267 LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------GVAHVVNLDLPKTVEDYVHRIGRTGRGG 337 (433)
Q Consensus 267 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 337 (433)
+++..+|+.+...++..+.+.++.| .|+|||+++++|+|+| ++.+|+++++|....+ .|++||+||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999988888777777 5999999999999999 8999999999987766 99999999999
Q ss_pred CceeEEEEeccccHHHH----HHHHHHhhhhccc----ccccchhhhHHHHHHHHHHHHhcCCCC
Q 013962 338 SMGQATSFYTDRDMLLV----AQIKKAIVDAESG----NAVAFATGKVARRKEREAAAAQKGATV 394 (433)
Q Consensus 338 ~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (433)
.+|.+..+++..|..+. +.+...+...... ...+.......+..+.++...+.....
T Consensus 526 ~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~ 590 (762)
T TIGR03714 526 DPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKGES 590 (762)
T ss_pred CceeEEEEEccchhhhhhcchHHHHHHHHHcCCCcccccCcccccHHHHHHHHHHHHHHHHHhHH
Confidence 99999999998776543 2333333221111 113333444555555555555444333
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.9e-41 Score=342.10 Aligned_cols=308 Identities=21% Similarity=0.274 Sum_probs=222.1
Q ss_pred EEcCCCChHHHHHHHHHHHHHhhcCCC-----CCCCCceEEEEcCcHHHHHHHHHHHHHHhc-----------cCCCceE
Q 013962 31 GCAETGSGKTAAFTIPMIQHCVAQTPV-----GRGDGPLALVLAPTRELAQQIEKEVKALSR-----------SLDSFKT 94 (433)
Q Consensus 31 ~~~~TGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-----------~~~~~~~ 94 (433)
|++|||||||++|.+|++..+..+... ...++.++|||+|+++|+.|+.+.++.... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998864311 123468999999999999999998875221 1236889
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCCHH----HHHHHHhhCCCCC
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEP----QIREVMQNLPDKH 169 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~~~----~~~~~~~~~~~~~ 169 (433)
...+|+....+....+...++|+|+||++|..++.+. ...++++++|||||+|.+.+..++. .+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777778999999999998876543 2457889999999999998654333 4455555556778
Q ss_pred cEEEEEeecchHHHHHHHHhcC--CCeEEEecCcCCCCCCceEEEEEcCchhh----------------HHHHHHHHHHH
Q 013962 170 QTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEK----------------VDRLLALLVEE 231 (433)
Q Consensus 170 ~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 231 (433)
|+|++|||+.+. ..... ++. .+..+.. ........+. .........+ ...+...+...
T Consensus 161 QrIgLSATI~n~-eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH-HHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999874 44444 443 2444322 2122222222 2221111110 00000111111
Q ss_pred HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC---------------------------------CceeeecCCCCH
Q 013962 232 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---------------------------------LHAVALHGGRNQ 278 (433)
Q Consensus 232 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~ 278 (433)
.... ...+.++||||||+..|+.++..|++.. ..+..+||+++.
T Consensus 237 il~~---i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 237 ILDE---VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHH---HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 1110 0123569999999999999999997641 125689999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCC-CCceeEEEE
Q 013962 279 SDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG-GSMGQATSF 345 (433)
Q Consensus 279 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~ 345 (433)
++|..+++.|++|++++||||+.++.|||++++++||+++.|.+..+|+||+||+||. |..+.++++
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 223444433
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.7e-41 Score=321.06 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=220.0
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
.-.|+++|.+|++.++.+++.++++|||+|||+++.. +...+... ...++||+||+++|+.||.+++.++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999987654 33333332 1348999999999999999999987643
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 168 (433)
+...+..+.++.... .+.+|+|+|++++.+... ..+.++++||+||||++... .+..++..+++.
T Consensus 185 -~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~ 249 (501)
T PHA02558 185 -PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNC 249 (501)
T ss_pred -cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhcc
Confidence 233343444443321 347899999999975432 24578999999999998754 456666667667
Q ss_pred CcEEEEEeecchHHHHH--HHHhcCCCeEEEecCcC------CCCCCceEEEEEcCch-----------hhHHHHH----
Q 013962 169 HQTLLFSATMPVEIEAL--AQEYLTDPVQVKVGKVS------SPTANVIQILEKVSEN-----------EKVDRLL---- 225 (433)
Q Consensus 169 ~~~i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----------~~~~~~~---- 225 (433)
.+++++||||....... ...++++ ......... .....+.......... .....+.
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 78999999997543211 1112222 111111000 0000000000000000 0000000
Q ss_pred --HHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccc
Q 013962 226 --ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVA 302 (433)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~ 302 (433)
..+....... ...+.+++|||.++++++.+++.|+..+.++..+||+++.++|..+++.|++|...||||| +++
T Consensus 329 Rn~~I~~~~~~~---~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l 405 (501)
T PHA02558 329 RNKWIANLALKL---AKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHH---HhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee
Confidence 1111111111 1234568999999999999999999999999999999999999999999999999999999 899
Q ss_pred ccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEecccc
Q 013962 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350 (433)
Q Consensus 303 ~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d 350 (433)
++|+|+|++++||++.++.|...|+|++||++|.+..+...++++-.|
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 999999999999999999999999999999999987665555554444
No 56
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.6e-40 Score=315.62 Aligned_cols=364 Identities=20% Similarity=0.205 Sum_probs=262.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|..+...+..| .++.++||+|||+++++|++...+. |..++|++||..|+.|.++.+..++..+
T Consensus 56 ~p~~vQlig~~~l~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L- 124 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG--KIAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL- 124 (745)
T ss_pred CccchHHhhhhhhcCC--ceeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC-
Confidence 4666666666655554 4999999999999999999766555 6679999999999999999999999886
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEcccchhcc-CCCHH------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRMLD-MGFEP------ 156 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~~~~~vIiDE~h~~~~-~~~~~------ 156 (433)
+++++++.|+.+.......+ .++|+|+||..| +++++.+. ..++.+.++|+||+|+++- ....+
T Consensus 125 GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 79999999998876555444 479999999999 88888763 3567899999999997542 10000
Q ss_pred ---------HHHHHHhhCCC------------------------------------------------------------
Q 013962 157 ---------QIREVMQNLPD------------------------------------------------------------ 167 (433)
Q Consensus 157 ---------~~~~~~~~~~~------------------------------------------------------------ 167 (433)
....+...+..
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00011111100
Q ss_pred ---------------------------------------------------------CCcEEEEEeecchHHHHHHHHhc
Q 013962 168 ---------------------------------------------------------KHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 168 ---------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
..++.+||+|......++...|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 23567888888765555555443
Q ss_pred CCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee
Q 013962 191 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 270 (433)
-..+.++...+..........+....++..++...+.+.. ..+.|+||||++++.++.+++.|.+.++++.
T Consensus 363 --l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~-------~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 363 --LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH-------AKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred --CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-------hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 2234444444443333444455556667777766665543 3456799999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCC-------CcEEEEccCCCChhHHHhhcccCCCCCCceeEE
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG-------VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQAT 343 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~-------~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 343 (433)
.+|+. ..+|+..+..|..+...|+|||+++++|+|++. .-+||+++.|.|...|.|++||+||.|.+|.+.
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 99997 778999999999999999999999999999988 559999999999999999999999999999999
Q ss_pred EEeccccHHHHH----HHHHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCCCcccc
Q 013962 344 SFYTDRDMLLVA----QIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSK 398 (433)
Q Consensus 344 ~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (433)
.+++..|..+.. .+.+.+.........+.......+..+.++...+......+..
T Consensus 512 ~~ls~eD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aQ~~~e~~~~~~Rk~ 570 (745)
T TIGR00963 512 FFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTRALESAQKRVEARNFDIRKQ 570 (745)
T ss_pred EEEeccHHHHHhhhhHHHHHHHHHcCCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998866532 2333332222112223333444555555555444443333333
No 57
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.4e-42 Score=296.79 Aligned_cols=330 Identities=18% Similarity=0.298 Sum_probs=242.4
Q ss_pred cCCCCCC-cHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 6 FHEYTRP-TSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 6 ~~~~~~~-~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
.+|+.++ ++.|+.|+..+..+ +++.++||||+||++||.+|.+.. +..+||+.|..+|...+.+-+.
T Consensus 14 ~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 14 LFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred HhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHHHHHHH
Confidence 4677776 78999999999865 589999999999999999999887 6689999999999998888877
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHh------hCCCcEEEeccHHH----HHHHHcCCCCCCCccEEEEcccchhccCC
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRF----LDHLQQGNTSLSRVSFVILDEADRMLDMG 153 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Ivv~T~~~l----~~~~~~~~~~~~~~~~vIiDE~h~~~~~~ 153 (433)
++- ..+..++...+..+..+.+ .....+++.||+.- +.-+.+....-.-+.++|+||||+...|+
T Consensus 83 ~LK-----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWG 157 (641)
T KOG0352|consen 83 RLK-----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWG 157 (641)
T ss_pred hcC-----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhc
Confidence 752 3333344444444443322 35678999999854 22222222333458899999999999887
Q ss_pred --CHHHHHHH---HhhCCCCCcEEEEEeecchHHHHHHHHh--cCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHH
Q 013962 154 --FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEY--LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 226 (433)
Q Consensus 154 --~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (433)
|++.+..+ .+.+ +....+.+|||..+.+++.+-.- +..|+.+...... ..++ +..+.-.+.+..-..
T Consensus 158 HDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NL---FYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 158 HDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNL---FYDNHMKSFITDCLT 231 (641)
T ss_pred cccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhh---hHHHHHHHHhhhHhH
Confidence 55554433 3444 46679999999998888765543 4455443221111 1111 111111111111111
Q ss_pred HHHHH--------HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 013962 227 LLVEE--------AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298 (433)
Q Consensus 227 ~~~~~--------~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 298 (433)
.+... ...........+-.||||.|++.|+.++-.|...|+++..||+++...+|.++-+.|.++++.||+|
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 11111 1111122223356899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 299 T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
|..+++|+|-|+|++|||++++.|..-|.|-.||+||.|.+.+|-+||+..|..-+..+
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987655543
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-40 Score=311.99 Aligned_cols=319 Identities=24% Similarity=0.235 Sum_probs=246.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|+|.|..+++.++.|+ |..|.||+|||+++++|++..... |+.++|++||++|+.|.++++..++..+
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l- 171 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL- 171 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc-
Confidence 78999999999999988 999999999999999999988665 7899999999999999999999999876
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCCC-------------------------CCCccEEEEc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTS-------------------------LSRVSFVILD 144 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~~-------------------------~~~~~~vIiD 144 (433)
++++++++|+.+.... ....+++|+|+|...| +++++.+... .+.+.++|||
T Consensus 172 Glsv~~i~gg~~~~~r--~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPDER--RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHHHH--HHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 7999999999875433 3345789999999988 7776655321 2457899999
Q ss_pred ccchhc-cCC-----------------CHHHHHHHHhhCCC---------------------------------------
Q 013962 145 EADRML-DMG-----------------FEPQIREVMQNLPD--------------------------------------- 167 (433)
Q Consensus 145 E~h~~~-~~~-----------------~~~~~~~~~~~~~~--------------------------------------- 167 (433)
|+|.++ +.. .......+...+..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999632 000 00000111110000
Q ss_pred ------------------------------------------------------------------------------CC
Q 013962 168 ------------------------------------------------------------------------------KH 169 (433)
Q Consensus 168 ------------------------------------------------------------------------------~~ 169 (433)
..
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 23
Q ss_pred cEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEE
Q 013962 170 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 249 (433)
Q Consensus 170 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~ 249 (433)
++.+||||......++...|..++.. ++...+......+.+...+..++...+...+.... ..+.++||||
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~--IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~-------~~~~pvLIft 480 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVR--IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH-------AQGRPVLVGT 480 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEE--eCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH-------hcCCCEEEEe
Confidence 56799999988777777777666544 44444444445555666677777777776665432 2234599999
Q ss_pred eccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---CCc-----EEEEccCCC
Q 013962 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLPK 321 (433)
Q Consensus 250 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---~~~-----~Vi~~~~~~ 321 (433)
++++.++.+++.|...++++..+||.+...++. +..|..+...|+|||+++++|+|++ ++. +||+++.|.
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 999999999999999999999999986654444 4455555557999999999999999 666 999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHH
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 353 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~ 353 (433)
|...|.|++||+||.|.+|.++++++..|..+
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99999999999999999999999999877654
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-40 Score=319.98 Aligned_cols=319 Identities=19% Similarity=0.239 Sum_probs=245.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|+++|..+...+.+|+ ++.+.||+|||+++++|++...+. |+.++|++||+.|+.|.++.+..++..+
T Consensus 78 ~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~~l- 146 (790)
T PRK09200 78 RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYEFL- 146 (790)
T ss_pred CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 67888888877776665 999999999999999999977765 8889999999999999999999999886
Q ss_pred CceEEEEECCCC-HHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEcccchhc-cCC--------
Q 013962 91 SFKTAIVVGGTN-IAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG-------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~~~~~vIiDE~h~~~-~~~-------- 153 (433)
++.++++.|+.+ ....... .+++|+|+||+.| ++++..+. ..++.+.++|+||+|.++ +..
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 799999999988 4443332 4589999999999 67666543 245778999999999643 100
Q ss_pred -------CHHHHHHHHhhCCC-----------------------------------------------------------
Q 013962 154 -------FEPQIREVMQNLPD----------------------------------------------------------- 167 (433)
Q Consensus 154 -------~~~~~~~~~~~~~~----------------------------------------------------------- 167 (433)
.......+...+..
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 01111111111110
Q ss_pred ----------------------------------------------------------CCcEEEEEeecchHHHHHHHHh
Q 013962 168 ----------------------------------------------------------KHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 168 ----------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
..++.+||+|......++...|
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 1256788888765555554444
Q ss_pred cCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCce
Q 013962 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 269 (433)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~ 269 (433)
.-..+.++...+..........+....++...+...+.... ..+.|+||||++++.++.+++.|.+.++++
T Consensus 385 --~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~-------~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 385 --NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH-------ETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred --CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-------hcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 33334444444444433344455666777777777665532 234679999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCccc---CCCc-----EEEEccCCCChhHHHhhcccCCCCCCcee
Q 013962 270 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV---MGVA-----HVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 341 (433)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi---p~~~-----~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 341 (433)
..+||.+...++..+...++.| +|+|||+++++|+|+ |++. +||+++.|.|...|.|++||+||.|.+|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999998888888887766 699999999999999 6898 99999999999999999999999999999
Q ss_pred EEEEeccccHHH
Q 013962 342 ATSFYTDRDMLL 353 (433)
Q Consensus 342 ~~~~~~~~d~~~ 353 (433)
+..+++..|..+
T Consensus 534 s~~~is~eD~l~ 545 (790)
T PRK09200 534 SQFFISLEDDLL 545 (790)
T ss_pred EEEEEcchHHHH
Confidence 999999877654
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.8e-39 Score=327.47 Aligned_cols=283 Identities=22% Similarity=0.312 Sum_probs=214.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|+ .|+++|..+++.++.++++++.||||+|||.. .++++..+.. ++.+++||+||++|+.|+++.++.+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 466 89999999999999999999999999999964 4555444432 27889999999999999999999998
Q ss_pred ccCCCceEEEEECCCCH-----HHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc---------
Q 013962 87 RSLDSFKTAIVVGGTNI-----AEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--------- 151 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~--------- 151 (433)
... ++.+..+.++... ......+. ++++|+|+||++|.+++. ......++++|+||||++++
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 764 5666666665431 22222333 568999999999988776 34455699999999999986
Q ss_pred --CCCH-HHHHHHHhhCCC------------------------CCcEEEEEeecchH-HHHHHHHhcCCCeEEEecCcCC
Q 013962 152 --MGFE-PQIREVMQNLPD------------------------KHQTLLFSATMPVE-IEALAQEYLTDPVQVKVGKVSS 203 (433)
Q Consensus 152 --~~~~-~~~~~~~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
.+|. ..+..++..++. ..|++++|||+++. ... .++.++..+.++....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 3453 456666665543 57899999999864 332 2333444455555555
Q ss_pred CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecccc---HHHHHHHHHHCCCceeeecCCCCHHH
Q 013962 204 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGGRNQSD 280 (433)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~ 280 (433)
...++.+.+.... .+...+...+... +.++||||++... ++.+++.|...|+++..+||++
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l----------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---- 365 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL----------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---- 365 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc----------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----
Confidence 5667777776554 3334444333211 1349999999888 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEE----ecccccCcccCC-CcEEEEccCCC
Q 013962 281 RESALRDFRNGSTNILVA----TDVASRGLDVMG-VAHVVNLDLPK 321 (433)
Q Consensus 281 r~~~~~~f~~g~~~vlv~----T~~~~~Gidip~-~~~Vi~~~~~~ 321 (433)
...+++|++|+++|||| |+++++|+|+|+ ++.||+|+.|.
T Consensus 366 -~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 -ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred -HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 589999999999 89999999886
No 61
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-40 Score=327.64 Aligned_cols=329 Identities=22% Similarity=0.318 Sum_probs=258.0
Q ss_pred ccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+|...+||-|.++|..++.|+++++.+|||.||++||.+|++.. ++.+|||.|..+|.+.+...+..
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 4689999999999999999999999999999999999999999877 77899999999998876666543
Q ss_pred HhccCCCceEEEEECCCCHHHHHH----HhhC--CCcEEEeccHHHHHH--HHcCCCCCCC---ccEEEEcccchhccCC
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRS----ELRG--GVSIVVATPGRFLDH--LQQGNTSLSR---VSFVILDEADRMLDMG 153 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~Ivv~T~~~l~~~--~~~~~~~~~~---~~~vIiDE~h~~~~~~ 153 (433)
.++....+.++....+... ...+ ..+|++.|||++... +......+.. +.++||||||+...|+
T Consensus 327 -----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 327 -----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred -----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 2788888888887643332 2233 588999999988422 1111122333 7899999999999987
Q ss_pred --CHHHHHHH---HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHH
Q 013962 154 --FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 228 (433)
Q Consensus 154 --~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (433)
|++.+..+ ...++ ...++++|||....+...+-..++-........ ....++....+...............+
T Consensus 402 HdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-sfnR~NL~yeV~~k~~~~~~~~~~~~~ 479 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS-SFNRPNLKYEVSPKTDKDALLDILEES 479 (941)
T ss_pred ccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc-cCCCCCceEEEEeccCccchHHHHHHh
Confidence 66665554 34444 478999999999888888777765443332222 222333333333222212211111111
Q ss_pred HHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCccc
Q 013962 229 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV 308 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 308 (433)
....+...+||||.++.+|+.++..|...++.+..||++|++.+|..+.+.|..++++|+|||=++++|||.
T Consensus 480 --------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK 551 (941)
T KOG0351|consen 480 --------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDK 551 (941)
T ss_pred --------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCC
Confidence 223667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 309 MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 309 p~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
|+|+.||||..|+|.+.|+|-+|||||+|....|++|+...|...++.+..
T Consensus 552 ~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 552 PDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred CceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877666543
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=299.07 Aligned_cols=331 Identities=26% Similarity=0.317 Sum_probs=255.3
Q ss_pred cccCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++..|++.+.|+|..|+.+ +++|+|.++..+|+||||++.-++-+..++.. +++.|++||..+|++|-+++|
T Consensus 209 lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 209 LKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred HHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEEehhHHhhcchHHHH
Confidence 4578999999999999976 45899999999999999999998888888774 888999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHH----HhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+.-+..+ ++.+.+-.|-........ ....+++|+|+|++-+-.+++.. ..+.+++.|||||+|.+-+...+..+
T Consensus 282 ~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RL 359 (830)
T COG1202 282 KERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRL 359 (830)
T ss_pred HHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccch
Confidence 9888766 677766666554433321 22356899999999996666654 77899999999999998876666665
Q ss_pred HHHHhh---CCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhh
Q 013962 159 REVMQN---LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 159 ~~~~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (433)
.-++.+ +-+..|+|++|||..+. .+.+..+-...+.+ ...+.+--.|....-+..+|.+-+..++... ...
T Consensus 360 dGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E-~~~ 433 (830)
T COG1202 360 DGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY----DERPVPLERHLVFARNESEKWDIIARLVKRE-FST 433 (830)
T ss_pred hhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee----cCCCCChhHeeeeecCchHHHHHHHHHHHHH-Hhh
Confidence 555433 34689999999999765 44555543333222 2233333445554444556655444444444 444
Q ss_pred hhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE
Q 013962 236 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV 315 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 315 (433)
..+..-.+++|||++|+..|..++..|...|+++..||++++-.+|..+...|.++++.++|+|.+++.|+|+|.-.+++
T Consensus 434 ~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIF 513 (830)
T COG1202 434 ESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIF 513 (830)
T ss_pred hhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHH
Confidence 44444557799999999999999999999999999999999999999999999999999999999999999999655544
Q ss_pred E---ccCCC-ChhHHHhhcccCCCCCC--ceeEEEEeccc
Q 013962 316 N---LDLPK-TVEDYVHRIGRTGRGGS--MGQATSFYTDR 349 (433)
Q Consensus 316 ~---~~~~~-s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 349 (433)
- ++..| |+.+|.||.|||||.+. .|.++++..+.
T Consensus 514 EsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 514 ESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 2 33333 89999999999999865 47788887654
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.8e-39 Score=319.61 Aligned_cols=311 Identities=19% Similarity=0.246 Sum_probs=234.7
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE
Q 013962 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 94 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 94 (433)
+-.+.+..+.+++++++.++||||||..+.++++.... .+.+++++.|++.++.|.++.+........+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 44567777888899999999999999999988887652 1568999999999999999999766543335566
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccc-hhccCCCHH-HHHHHHhhCCCCCcEE
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEP-QIREVMQNLPDKHQTL 172 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h-~~~~~~~~~-~~~~~~~~~~~~~~~i 172 (433)
+...+..+ ....+++|+|+|++.|.+.+.. ...+.++++|||||+| +.++.++.. .+..+...+++..++|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 65555432 2334579999999999988876 4568899999999999 466655443 3345566677889999
Q ss_pred EEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHH-HHHHHHHHhhhhcCCCCCeEEEEEec
Q 013962 173 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL-ALLVEEAFLAEKSCHPFPLTIVFVER 251 (433)
Q Consensus 173 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvf~~~ 251 (433)
+||||++... ...++.++..+..... ...+...+......++....+ ..+... .. ...+.+|||+++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~-l~-----~~~g~iLVFlpg 218 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHA-LA-----SETGSILVFLPG 218 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHH-HH-----hcCCcEEEEECC
Confidence 9999998653 3566665544443322 112334444333333322211 122111 11 123569999999
Q ss_pred cccHHHHHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC-------
Q 013962 252 KTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK------- 321 (433)
Q Consensus 252 ~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~------- 321 (433)
..+++.+++.|.. .++.+..+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||+++.++
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~ 298 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPK 298 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccc
Confidence 9999999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred -----------ChhHHHhhcccCCCCCCceeEEEEeccccHHH
Q 013962 322 -----------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 353 (433)
Q Consensus 322 -----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~ 353 (433)
|..++.||+||+||. .+|.|+.+++..+...
T Consensus 299 ~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 299 TGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred cCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 345689999999999 6899999998876543
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=320.81 Aligned_cols=322 Identities=21% Similarity=0.277 Sum_probs=238.1
Q ss_pred ccCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
...++.++++.|++++.... +++|++|++|||||||+++++.++..+.+. +.+++++||+++|+.|.+++++
T Consensus 25 ~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkALa~Ek~~~~~ 97 (766)
T COG1204 25 KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKALAEEKYEEFS 97 (766)
T ss_pred ccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHHHHHHHHHHhh
Confidence 45677789999999997777 458999999999999999999999998774 6889999999999999999999
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
.+-.. ++++...+|+......+ -.+++|+|+|||++....++.......+++||+||+|.+.+...++.+..+..
T Consensus 98 ~~~~~--GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~ 172 (766)
T COG1204 98 RLEEL--GIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVA 172 (766)
T ss_pred hHHhc--CCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHH
Confidence 44332 89999999998754422 25689999999999888888777788999999999998887766666666655
Q ss_pred hCC---CCCcEEEEEeecchHHHHHHHHhcCCCeEEE--ecCcCCCCCCceEEEEEcCch-----hhHHHHHHHHHHHHH
Q 013962 164 NLP---DKHQTLLFSATMPVEIEALAQEYLTDPVQVK--VGKVSSPTANVIQILEKVSEN-----EKVDRLLALLVEEAF 233 (433)
Q Consensus 164 ~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 233 (433)
... ...|++++|||+|+. ...+...-.++.... ........+.....+...... .........+.+..
T Consensus 173 r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~- 250 (766)
T COG1204 173 RMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL- 250 (766)
T ss_pred HHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH-
Confidence 443 347999999999865 344443333322111 111111122222222211111 12223333333322
Q ss_pred hhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-------------------------------------CCceeeecCCC
Q 013962 234 LAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVALHGGR 276 (433)
Q Consensus 234 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~ 276 (433)
..++++||||+++..+...++.|... ...+..+|+++
T Consensus 251 ------~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 251 ------AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred ------hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 45577999999999998888888730 01357899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE----Ecc-----CCCChhHHHhhcccCCCCCCc--eeEEEE
Q 013962 277 NQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLD-----LPKTVEDYVHRIGRTGRGGSM--GQATSF 345 (433)
Q Consensus 277 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~-----~~~s~~~~~Q~~GR~~R~g~~--g~~~~~ 345 (433)
+.++|..+.+.|+.|.++|||||++++.|+|+|.-.+|| .|+ .+-++.++.||.|||||.|-+ |.++++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEE
Confidence 999999999999999999999999999999999666665 244 344788999999999998764 556665
Q ss_pred e
Q 013962 346 Y 346 (433)
Q Consensus 346 ~ 346 (433)
.
T Consensus 405 ~ 405 (766)
T COG1204 405 A 405 (766)
T ss_pred e
Confidence 5
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.8e-39 Score=309.96 Aligned_cols=319 Identities=17% Similarity=0.179 Sum_probs=226.6
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHH---------HHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 14 SIQAQAMPVALSGRDLLGCAETGSGKTAAFT---------IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 14 ~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~---------~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..|+++++.+.+++++++.|+||||||.+.- .+.+..+..-. ......++++++|+++|+.|+..++.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 4799999999999999999999999997622 22222221100 112357899999999999999999987
Q ss_pred Hhcc--CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 85 LSRS--LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
..+. ..+..+....|+..... ........+|+++|+... ...+.++++||+||||.+...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 6644 34566778888876321 111223568999996521 1346789999999999987653 4444555
Q ss_pred hhCC-CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCch---------hhHHHHHHHHHHHH
Q 013962 163 QNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN---------EKVDRLLALLVEEA 232 (433)
Q Consensus 163 ~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 232 (433)
.... ...|+++||||++...... ..++.++..+..... ....+.+.+...... .....+...+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~- 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY- 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh-
Confidence 4332 3358999999998777665 578888877766432 223344444322210 1111111111110
Q ss_pred HhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHH-hcCCCcEEEEecccccCcccC
Q 013962 233 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDF-RNGSTNILVATDVASRGLDVM 309 (433)
Q Consensus 233 ~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~T~~~~~Gidip 309 (433)
....++.+|||++++.+++.+++.|... ++.+..+||++++. .+.+++| ++|+.+|||||+++++|+|+|
T Consensus 391 -----~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 391 -----TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred -----hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccccc
Confidence 0112356999999999999999999887 68999999999975 4666777 689999999999999999999
Q ss_pred CCcEEEEcc---CCC---------ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHH
Q 013962 310 GVAHVVNLD---LPK---------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356 (433)
Q Consensus 310 ~~~~Vi~~~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~ 356 (433)
++++||++| .|. |.++|.||+||+||. .+|.|+.+++..+...+.+
T Consensus 464 ~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~r 521 (675)
T PHA02653 464 NATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKR 521 (675)
T ss_pred CeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHH
Confidence 999999998 454 788999999999999 7899999999877544333
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.7e-39 Score=317.27 Aligned_cols=311 Identities=20% Similarity=0.279 Sum_probs=233.6
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE
Q 013962 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 94 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 94 (433)
+-.+.+.++.+++++++.++||||||.++.+++++.... +.++++++|++.++.|.++.+........+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 344677778888999999999999999998888765321 358999999999999999999766544446677
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccch-hccCCC-HHHHHHHHhhCCCCCcEE
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMGF-EPQIREVMQNLPDKHQTL 172 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~i 172 (433)
+...++.+. .....+|+|+|++.|.+.+.. ...+.++++|||||+|. ..+.+. ...+..++..+++..|++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 776665532 224568999999999988775 45789999999999996 344332 223445566677889999
Q ss_pred EEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecc
Q 013962 173 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK 252 (433)
Q Consensus 173 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~ 252 (433)
+||||++.. ....++.++..+..... ...+.+.+.......+....+......... ...+.+|||+++.
T Consensus 154 lmSATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-----~~~g~iLVFlpg~ 222 (812)
T PRK11664 154 IMSATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLR-----QESGSLLLFLPGV 222 (812)
T ss_pred EEecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHH-----hCCCCEEEEcCCH
Confidence 999999864 23566665544443322 122444444444333333222111111111 1235699999999
Q ss_pred ccHHHHHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC--------
Q 013962 253 TRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK-------- 321 (433)
Q Consensus 253 ~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~-------- 321 (433)
.+++.+++.|.. .++.+..+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||+++.++
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 999999999987 578899999999999999999999999999999999999999999999999988764
Q ss_pred ----------ChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 322 ----------TVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 322 ----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
|..+|.||+||+||. .+|.|+.+++..+..
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 345899999999999 689999999877653
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.1e-38 Score=332.45 Aligned_cols=322 Identities=18% Similarity=0.247 Sum_probs=245.0
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|| .|++.|+++++.+++++++++.||||+|||++++++++.... ++.+++|++||++|+.|+++.+..++
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 788 699999999999999999999999999999966555444322 27789999999999999999999988
Q ss_pred ccCC-CceEEEEECCCCHHHHHH---Hh-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC---------
Q 013962 87 RSLD-SFKTAIVVGGTNIAEQRS---EL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM--------- 152 (433)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~---~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~--------- 152 (433)
...+ ++.+..++|+....+... .+ .++++|+|+||+.+.+.+... . ..+++++|+||||+++++
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid~~L~ 224 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNIDRSLQ 224 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccchhhh
Confidence 6542 467778888887665533 23 345899999999998766542 1 266999999999999863
Q ss_pred --CCHHHHHH----HHh----------------------hCCCCCc-EEEEEeecchHHHHHHHHhcCCCeEEEecCcCC
Q 013962 153 --GFEPQIRE----VMQ----------------------NLPDKHQ-TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS 203 (433)
Q Consensus 153 --~~~~~~~~----~~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
+|.+.+.. ++. .++...+ .+.+|||+++... ...++.++..+.++....
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~ 302 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRS 302 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCC
Confidence 56555543 221 2344455 5779999986411 223456677777777666
Q ss_pred CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecccc---HHHHHHHHHHCCCceeeecCCCCHHH
Q 013962 204 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGGRNQSD 280 (433)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~ 280 (433)
...++.+.+.......+ ..+...+... +..+||||+++.. |+.+++.|...|+++..+|++
T Consensus 303 ~lr~i~~~yi~~~~~~k-~~L~~ll~~~----------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~----- 366 (1638)
T PRK14701 303 ALRNIVDVYLNPEKIIK-EHVRELLKKL----------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK----- 366 (1638)
T ss_pred CCCCcEEEEEECCHHHH-HHHHHHHHhC----------CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----
Confidence 67778877766544333 3333333211 1348999999875 589999999999999999984
Q ss_pred HHHHHHHHhcCCCcEEEEe----cccccCcccCC-CcEEEEccCCC---ChhHHHhhc-------------ccCCCCCCc
Q 013962 281 RESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK---TVEDYVHRI-------------GRTGRGGSM 339 (433)
Q Consensus 281 r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~-~~~Vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~ 339 (433)
|...+++|++|+++||||| +++++|||+|+ ++.||++|.|+ +...|.|.. ||+||.|.+
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 8899999999999999999 48999999998 99999999999 877776665 999999998
Q ss_pred eeEEEEeccccHHHHHHH
Q 013962 340 GQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 340 g~~~~~~~~~d~~~~~~~ 357 (433)
+.++..+...+...++.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 447 IEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred chhHHHhHHHHHHHHHHH
Confidence 888766666665555443
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.6e-39 Score=303.03 Aligned_cols=331 Identities=25% Similarity=0.327 Sum_probs=232.4
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
.-.+|.||.+.+..++ ++|+||++|||+|||++|...+..++...+ ..++++++|++-|+.|+...+..++.
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~- 131 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI- 131 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC-
Confidence 4468999999999999 999999999999999999887777765543 68899999999999999866666543
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCC-CCCccEEEEcccchhccCC-CHHHHHHHHhhCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS-LSRVSFVILDEADRMLDMG-FEPQIREVMQNLP 166 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~-~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~ 166 (433)
...+....||.........++...+|+|+||+.+.+.+.+.... +++|.++||||||+-.... |...+...+..-.
T Consensus 132 --~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 132 --PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred --cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 34555555665544444567778899999999998888775443 5889999999999987554 5555555555444
Q ss_pred CCCcEEEEEeecchHHHHH--------------------------------------------------HHHhcC-----
Q 013962 167 DKHQTLLFSATMPVEIEAL--------------------------------------------------AQEYLT----- 191 (433)
Q Consensus 167 ~~~~~i~~SAT~~~~~~~~--------------------------------------------------~~~~~~----- 191 (433)
...|+|++||||....... ++.++.
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 4559999999993221111 000000
Q ss_pred ------CCeEEE----ecCcCCCCCCc---eE-------------------EEE--------------------------
Q 013962 192 ------DPVQVK----VGKVSSPTANV---IQ-------------------ILE-------------------------- 213 (433)
Q Consensus 192 ------~~~~~~----~~~~~~~~~~~---~~-------------------~~~-------------------------- 213 (433)
+..... ........++. .. ...
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 000000 00000000000 00 000
Q ss_pred -------------------Ec-CchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC---CCcee
Q 013962 214 -------------------KV-SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAV 270 (433)
Q Consensus 214 -------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~ 270 (433)
.. ...++...+...+.+... ..+..++|||+.++..|..+...|... +++..
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-----~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-----QNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-----cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 00 012233333333333322 355678999999999999999999732 33433
Q ss_pred eec--------CCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeE
Q 013962 271 ALH--------GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQA 342 (433)
Q Consensus 271 ~~~--------~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 342 (433)
.+. .+|++.+..++++.|++|+++|||||+++++|+|++.|+.||.||...|+..++||+|| ||. ..|.+
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~ 522 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKC 522 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeE
Confidence 333 38999999999999999999999999999999999999999999999999999999999 998 45888
Q ss_pred EEEeccccHHHHHH
Q 013962 343 TSFYTDRDMLLVAQ 356 (433)
Q Consensus 343 ~~~~~~~d~~~~~~ 356 (433)
+++++..+....+.
T Consensus 523 vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 523 VLLTTGSEVIEFER 536 (746)
T ss_pred EEEEcchhHHHHHH
Confidence 88888554444443
No 69
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.2e-37 Score=289.26 Aligned_cols=333 Identities=22% Similarity=0.265 Sum_probs=255.9
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
...+| +||..|+.++..|... -+-+++++.|||||+++++.++..+.. |.++.+++||.-|+.|.
T Consensus 257 ~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 257 AALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEILAEQH 327 (677)
T ss_pred HhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHHHHHHH
Confidence 45566 8999999999999843 257999999999999999999988766 99999999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
++.+.+++..+ ++.+..++|..........+ .+..+|+|+| +.+......+.++.+||+||-|++.-
T Consensus 328 ~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHRFGV--- 398 (677)
T COG1200 328 YESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHRFGV--- 398 (677)
T ss_pred HHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEeccccccH---
Confidence 99999999876 59999999988766554433 4569999999 55556667789999999999999653
Q ss_pred HHHHHHHHhhCCC-CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHH
Q 013962 155 EPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAF 233 (433)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (433)
.-+..+..-.. .+.++.|||||.+.... -..+++-..-.+....+....+...... .+....+++.+.+..
T Consensus 399 --~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~---~~~~~~v~e~i~~ei- 470 (677)
T COG1200 399 --HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIP---HERRPEVYERIREEI- 470 (677)
T ss_pred --HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEec---cccHHHHHHHHHHHH-
Confidence 33333333334 57899999999877544 3444454444444444444444444433 345566666666554
Q ss_pred hhhhcCCCCCeEEEEEeccccH--------HHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 013962 234 LAEKSCHPFPLTIVFVERKTRC--------DEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303 (433)
Q Consensus 234 ~~~~~~~~~~~~lvf~~~~~~~--------~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 303 (433)
..+.++.+.||-+++. ..+++.|+.. +.++..+||.|+++++.+++++|++|+++|||||.+++
T Consensus 471 ------~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 471 ------AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred ------HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 3456799999988765 4556666643 56799999999999999999999999999999999999
Q ss_pred cCcccCCCcEEEEccCC-CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhhhccccc
Q 013962 304 RGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGNA 369 (433)
Q Consensus 304 ~Gidip~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (433)
.|||+|++.++|+.+.. ...++..|.+||+||-+..+.|++++.+......++-.+.+.+..++..
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~ 611 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFV 611 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcce
Confidence 99999999998887764 4788999999999999999999999988774444444455555444443
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.7e-37 Score=314.96 Aligned_cols=327 Identities=25% Similarity=0.321 Sum_probs=237.1
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
+.-++|+||.+++..++.+ ++++++|||+|||+++++++...+.. .++++||++|+++|+.||.+.++.++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 4457999999999998876 89999999999999998888777632 277899999999999999999998864
Q ss_pred cCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC
Q 013962 88 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 167 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~ 167 (433)
. ....+..++|+..... ....+.+.+|+|+||+.+...+......+.++++|||||||++.+......+...+.....
T Consensus 84 ~-~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 84 I-PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred C-CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 3 2457777888877654 3445567899999999998888777778889999999999998765433444444444445
Q ss_pred CCcEEEEEeecchHHH---HHHHHhcCCCeEEEecCcCC-----CCCCceEEEEEcCc----------------------
Q 013962 168 KHQTLLFSATMPVEIE---ALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKVSE---------------------- 217 (433)
Q Consensus 168 ~~~~i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------------- 217 (433)
.+++++|||||..... ..+..+......+....... ....+.......+.
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999954322 22222211111110000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 218 -------------------------------------------------------------------------------- 217 (433)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (433)
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence
Q ss_pred ------------------------hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeec
Q 013962 218 ------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 273 (433)
Q Consensus 218 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~ 273 (433)
..|...+...+.+ .....++.++||||++++.++.+.+.|...++.+..+|
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~-----~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKE-----QLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHH-----HHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 0000000000000 00114567899999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEE
Q 013962 274 GG--------RNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSF 345 (433)
Q Consensus 274 ~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 345 (433)
|. +++.+|..+++.|++|+.++||||+++++|+|+|++++||+|++|+++..|+||+||+||.|. |.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEE
Confidence 86 899999999999999999999999999999999999999999999999999999999999876 777777
Q ss_pred ecccc
Q 013962 346 YTDRD 350 (433)
Q Consensus 346 ~~~~d 350 (433)
+....
T Consensus 476 ~~~~t 480 (773)
T PRK13766 476 IAKGT 480 (773)
T ss_pred EeCCC
Confidence 76544
No 71
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=272.61 Aligned_cols=360 Identities=19% Similarity=0.294 Sum_probs=266.2
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+...++||.|.+++++.++++++++.+|||.||++||.+|++.. .+.+||+||..+|.+.+.-.++.+
T Consensus 89 ~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~plislmedqil~lkql 157 (695)
T KOG0353|consen 89 QFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPLISLMEDQILQLKQL 157 (695)
T ss_pred HhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechhHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999887 888999999999999888888876
Q ss_pred hccCCCceEEEEECCCCHHHHHHH---h---hCCCcEEEeccHHHHH------HHHcCCCCCCCccEEEEcccchhccCC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSE---L---RGGVSIVVATPGRFLD------HLQQGNTSLSRVSFVILDEADRMLDMG 153 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~Ivv~T~~~l~~------~~~~~~~~~~~~~~vIiDE~h~~~~~~ 153 (433)
++....+....+.++.... + ....++++.||+++.. .+. .......+.+|-+||+|+...|+
T Consensus 158 -----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle-ka~~~~~~~~iaidevhccsqwg 231 (695)
T KOG0353|consen 158 -----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE-KALEAGFFKLIAIDEVHCCSQWG 231 (695)
T ss_pred -----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH-HHhhcceeEEEeecceeehhhhC
Confidence 5666666666655443322 1 2457899999998832 222 23445678999999999999887
Q ss_pred --CHHHHH--HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHH
Q 013962 154 --FEPQIR--EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLV 229 (433)
Q Consensus 154 --~~~~~~--~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (433)
|++.+. .++.+--++..++++|||..+.+.......+.-...+...... ..+++...+...+.++ +..++.+.
T Consensus 232 hdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f-nr~nl~yev~qkp~n~--dd~~edi~ 308 (695)
T KOG0353|consen 232 HDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF-NRPNLKYEVRQKPGNE--DDCIEDIA 308 (695)
T ss_pred cccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc-CCCCceeEeeeCCCCh--HHHHHHHH
Confidence 454443 2333333577899999999988888777766544333333222 2334443333333322 22233332
Q ss_pred HHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC
Q 013962 230 EEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309 (433)
Q Consensus 230 ~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 309 (433)
+.. ...-.++..||||-+...|+.++..|+.+|++...||+.|.+.++.-+-+.|..|+++|+|+|-++++|||-|
T Consensus 309 k~i----~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkp 384 (695)
T KOG0353|consen 309 KLI----KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKP 384 (695)
T ss_pred HHh----ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCC
Confidence 222 1123456689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCChhHHHh-------------------------------------------hcccCCCCCCceeEEEEe
Q 013962 310 GVAHVVNLDLPKTVEDYVH-------------------------------------------RIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 310 ~~~~Vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~~g~~~~~~ 346 (433)
++++||+...|+|...|.| -.||+||.+.+..|++||
T Consensus 385 dvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 385 DVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred CeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEe
Confidence 9999999999999999999 789999999999999999
Q ss_pred ccccHHHHHHHHHHhh--hhcccccccchhh-hHHHHHHHHHHHHh
Q 013962 347 TDRDMLLVAQIKKAIV--DAESGNAVAFATG-KVARRKEREAAAAQ 389 (433)
Q Consensus 347 ~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 389 (433)
.-.|......+..... ....-+++.++.. +.|||...++...+
T Consensus 465 ~~~difk~ssmv~~e~~g~q~ly~mv~y~~d~s~crrv~laehfde 510 (695)
T KOG0353|consen 465 GFADIFKISSMVQMENTGIQKLYEMVRYAADISKCRRVKLAEHFDE 510 (695)
T ss_pred chHHHHhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 8888766554432211 1111223333333 45666665554433
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.3e-38 Score=292.83 Aligned_cols=300 Identities=20% Similarity=0.191 Sum_probs=202.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCH----
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI---- 103 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---- 103 (433)
++++.+|||||||.+++++++..+... .+.++++++|+++|+.|+++.+..+++. .++.++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHh
Confidence 479999999999999999999876443 2678999999999999999999998642 23333333221
Q ss_pred --------HHHHHHh------hCCCcEEEeccHHHHHHHHcCCCC----C--CCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 104 --------AEQRSEL------RGGVSIVVATPGRFLDHLQQGNTS----L--SRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 104 --------~~~~~~~------~~~~~Ivv~T~~~l~~~~~~~~~~----~--~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
....... ....+|+++||+.+...+..+... + -..++||+||+|.+.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 0000001 123679999999998776652111 1 123789999999988754332 444444
Q ss_pred hCC-CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC--chhhHHHHHHHHHHHHHhhhhcCC
Q 013962 164 NLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS--ENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 164 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
.++ .+.|+++||||++..+..........+.......... .....+.+.... ...+...+...+ +.. .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~-------~ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLL-EFI-------K 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHH-HHh-------h
Confidence 443 4688999999999766665554432211111110000 000011111111 112222222222 111 2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCC--ceeeecCCCCHHHHHH----HHHHHhcCCCcEEEEecccccCcccCCCcEE
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRES----ALRDFRNGSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
.++++||||++++.++.+++.|.+.+. .+..+||++++.+|.. +++.|++|..+|||||+++++|+|+| ++.|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 346799999999999999999988765 5899999999999976 48899999999999999999999996 7888
Q ss_pred EEccCCCChhHHHhhcccCCCCCCc----eeEEEEecccc
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYTDRD 350 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~~~d 350 (433)
|++..| ...|+||+||+||.|.. |.++++....+
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 888665 78999999999998764 35666665433
No 73
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-40 Score=265.16 Aligned_cols=302 Identities=33% Similarity=0.545 Sum_probs=257.3
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
||+|-+.||..|+..|.+|++...-|-+++++|..|.|||.+|.+..++.+.- .+....++++|.|++|+-|+..
T Consensus 54 lraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-----v~g~vsvlvmchtrelafqi~~ 128 (387)
T KOG0329|consen 54 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-----VDGQVSVLVMCHTRELAFQISK 128 (387)
T ss_pred HHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-----CCCeEEEEEEeccHHHHHHHHH
Confidence 57889999999999999999999999999999999999999998888877532 2235678999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIR 159 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~ 159 (433)
+..+|.+++++.++.+..||.........+.+.++|+|+||+++..+.++....+.+++..|+|||+.++++ +.+..+.
T Consensus 129 ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQ 208 (387)
T KOG0329|consen 129 EYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQ 208 (387)
T ss_pred HHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888888999999999999999999999999999999999988754 3667788
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCC-CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhc
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
++....|...|+..+|||++..+...+..++.+|..+.+..... ......+.+..+...++...+..++....
T Consensus 209 Eifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~Le------ 282 (387)
T KOG0329|consen 209 EIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLE------ 282 (387)
T ss_pred HHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh------
Confidence 88888899999999999999999999999999998776654433 23345566666677777666665554322
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
...++||+.+... | . | ..+ +|||+.+++|+|+..++.|++||
T Consensus 283 ---FNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 283 ---FNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred ---hcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 2349999987654 0 0 2 123 89999999999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEeccccH
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~ 351 (433)
.|.+...|.+|.|||||.|.+|.++.+++..+.
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 999999999999999999999999999976543
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-37 Score=299.86 Aligned_cols=316 Identities=16% Similarity=0.152 Sum_probs=211.0
Q ss_pred CCCCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~---~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
-..|||||++|+..+..+ ++.++++|||+|||++++..+... +.++|||||+..|+.||.+++.++
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 357999999999998843 368999999999999987554432 566999999999999999999998
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC--------CCCCCCccEEEEcccchhccCCCHHH
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--------~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
+.. ....+..++|+.... ......|+|+|++.+.....+. ...-..+++||+||||++.. ..
T Consensus 322 ~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~ 391 (732)
T TIGR00603 322 STI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AM 391 (732)
T ss_pred cCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HH
Confidence 643 345566666654321 1234689999999885332111 11224689999999999854 44
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHH--HHHHhcCCCeEEEecCc------CCCCCCceEEEEEcCchhhHHH------
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEA--LAQEYLTDPVQVKVGKV------SSPTANVIQILEKVSENEKVDR------ 223 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------ 223 (433)
+..++..++ ....+++||||...... .+..+++ |..+..... .-....................
T Consensus 392 fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~ 469 (732)
T TIGR00603 392 FRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR 469 (732)
T ss_pred HHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch
Confidence 555666664 44579999999633221 1222232 222222110 0000011111111111100000
Q ss_pred ---HHHH-----HHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC-CCc
Q 013962 224 ---LLAL-----LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STN 294 (433)
Q Consensus 224 ---~~~~-----~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ 294 (433)
++.. +.............+.++||||.+...++.+++.|. +..+||.++..+|..+++.|+.| .++
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 0000 000000001111356789999999999988888772 45689999999999999999875 789
Q ss_pred EEEEecccccCcccCCCcEEEEccCC-CChhHHHhhcccCCCCCCceeE-------EEEeccccHH
Q 013962 295 ILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGSMGQA-------TSFYTDRDML 352 (433)
Q Consensus 295 vlv~T~~~~~Gidip~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~d~~ 352 (433)
+||+|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.+++....+
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999999999999999999987 5999999999999999765553 6677765443
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=307.70 Aligned_cols=330 Identities=22% Similarity=0.303 Sum_probs=256.5
Q ss_pred ccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++...|+..|++||.+|+..+.+|++++|..+||||||.+|++|++..++++. ..++|+|.|+++|++.+.+++
T Consensus 62 ~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 62 ALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHhhHHHHH
Confidence 35567888899999999999999999999999999999999999999999865 458899999999999999999
Q ss_pred HHHhccCC-CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC----CCCCCccEEEEcccchhccCCCHH-
Q 013962 83 KALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEP- 156 (433)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDE~h~~~~~~~~~- 156 (433)
.++...++ .+....++|+....+....+.+.++|++|||++|...+.+.. ..++++++||+||+|.+-.. ++.
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~ 214 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSE 214 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhH
Confidence 99998876 688899999999888878888999999999999977555432 23567999999999965432 333
Q ss_pred ------HHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc-----h---hhHH
Q 013962 157 ------QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-----N---EKVD 222 (433)
Q Consensus 157 ------~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~ 222 (433)
.+..++...+...|+|++|||.... .+....+........+.....+....... ...+. . ....
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~~~r~s~~ 292 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAESIRRSAL 292 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhhhcccchH
Confidence 3334444455688999999999755 45566666666555433333333222222 22220 0 0112
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHH----HHHHHCC----CceeeecCCCCHHHHHHHHHHHhcCCCc
Q 013962 223 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS----EALVAEG----LHAVALHGGRNQSDRESALRDFRNGSTN 294 (433)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 294 (433)
.....+..... ..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|..+...|+.|++.
T Consensus 293 ~~~~~~~~~~~------~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 293 AELATLAALLV------RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred HHHHHHHHHHH------HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 22222222222 23355999999999999886 4444445 5788999999999999999999999999
Q ss_pred EEEEecccccCcccCCCcEEEEccCCC-ChhHHHhhcccCCCCCCceeEEEEec
Q 013962 295 ILVATDVASRGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 295 vlv~T~~~~~Gidip~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
++++|++++-|+|+-+++.||..+.|. +..++.|+.||+||.++.+..+.+..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999 89999999999999987666666654
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.6e-36 Score=276.52 Aligned_cols=297 Identities=19% Similarity=0.184 Sum_probs=202.1
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC---
Q 013962 15 IQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 89 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~--~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--- 89 (433)
+|.++++++.++++ +++.+|||||||.+++++++.. +.++++++|+++|++|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 69999999998874 7889999999999999988753 4568999999999999999999987543
Q ss_pred CCceEEEEECCCCHH--HHH------------------HHhhCCCcEEEeccHHHHHHHHcCC--------CCCCCccEE
Q 013962 90 DSFKTAIVVGGTNIA--EQR------------------SELRGGVSIVVATPGRFLDHLQQGN--------TSLSRVSFV 141 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~Ivv~T~~~l~~~~~~~~--------~~~~~~~~v 141 (433)
.+..+..+.|..... ... ......+.|++|||+.|...+.... ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 245566666652221 000 1112467889999999966554311 124679999
Q ss_pred EEcccchhccCCCH-----HHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh--cCCCeEEEecCcC------------
Q 013962 142 ILDEADRMLDMGFE-----PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY--LTDPVQVKVGKVS------------ 202 (433)
Q Consensus 142 IiDE~h~~~~~~~~-----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~------------ 202 (433)
|+||+|.+..+... .....++.......+++++|||+++.+...+... ++.+.....+...
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 99999987643311 1233333333345799999999998877777654 4444322222200
Q ss_pred ------CCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC--CceeeecC
Q 013962 203 ------SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHG 274 (433)
Q Consensus 203 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~ 274 (433)
...+.+.+.+.. ....+...+.. +.+...... ...++.++||||+++..++.+++.|+..+ ..+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~-l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSE-LAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHH-HHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 001233333333 22222222222 212111111 11245679999999999999999999864 57888999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCC
Q 013962 275 GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTG 334 (433)
Q Consensus 275 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~ 334 (433)
.+++.+|... ++.+|||||+++++|+|+|.. +|| ++ |.+...|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999988654 367899999999999999976 565 45 789999999999997
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-36 Score=292.74 Aligned_cols=359 Identities=18% Similarity=0.195 Sum_probs=263.9
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.++||-.+.+..+.-++.-|..|+||+|||++|++|++..++. +..++|++||+.|+.|.++++..++..+
T Consensus 80 g~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 80 GLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred CCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 4566666667667666777999999999999999999988765 6679999999999999999999999886
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC-CCC-----CCccEEEEcccchhccCC----------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN-TSL-----SRVSFVILDEADRMLDMG---------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~-~~~-----~~~~~vIiDE~h~~~~~~---------- 153 (433)
+++++++.|+.+.......+ .++|+|+||+.| ++++..+. ..+ +.+.++|+||+|.++=..
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 79999999998877665544 589999999999 99988763 233 579999999999642100
Q ss_pred ------CHHHHHHHHhhCCC------------------------------------------------------------
Q 013962 154 ------FEPQIREVMQNLPD------------------------------------------------------------ 167 (433)
Q Consensus 154 ------~~~~~~~~~~~~~~------------------------------------------------------------ 167 (433)
.......+...+..
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 00000111110000
Q ss_pred ----------------------------------------------------------------------CCcEEEEEee
Q 013962 168 ----------------------------------------------------------------------KHQTLLFSAT 177 (433)
Q Consensus 168 ----------------------------------------------------------------------~~~~i~~SAT 177 (433)
..++-+||+|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 1245567777
Q ss_pred cchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHH
Q 013962 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE 257 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~ 257 (433)
......++..-| +-..+.++...+..........+....++..++...+.+.. ..+.|+||||+|++.++.
T Consensus 389 a~te~~Ef~~iY--~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~-------~~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 389 ADTEAYEFQQIY--NLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG-------VRKQPVLVGTVSIEASEF 459 (896)
T ss_pred ChhHHHHHHHHh--CCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEEeCcHHHHHH
Confidence 665555544444 23334444444444444555566677788888877776544 456779999999999999
Q ss_pred HHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC----------------------------
Q 013962 258 VSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------------------------- 309 (433)
Q Consensus 258 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---------------------------- 309 (433)
+++.|.+.++++..+|+.+...++..+.+.|+.|. |+|||+++++|+|+.
T Consensus 460 ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~ 537 (896)
T PRK13104 460 LSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEW 537 (896)
T ss_pred HHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999996 999999999999995
Q ss_pred ----------CCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccccccchhh
Q 013962 310 ----------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGNAVAFATG 375 (433)
Q Consensus 310 ----------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~ 375 (433)
+--+||-...+.|...-.|..||+||+|.+|.+-.|++-.|..+. +.+.+.+.........+....
T Consensus 538 ~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~ 617 (896)
T PRK13104 538 QKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRLGMQPGEPIEHS 617 (896)
T ss_pred hhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHcCCCCCCcCcch
Confidence 122789999999999999999999999999999999999887653 234433332222222333344
Q ss_pred hHHHHHHHHHHHHhcC
Q 013962 376 KVARRKEREAAAAQKG 391 (433)
Q Consensus 376 ~~~~~~~~~~~~~~~~ 391 (433)
...+..+.++...+..
T Consensus 618 ~~~~~i~~aQ~~vE~~ 633 (896)
T PRK13104 618 LVTRAIENAQRKLEGH 633 (896)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555444433
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=290.63 Aligned_cols=341 Identities=20% Similarity=0.265 Sum_probs=236.5
Q ss_pred ccCCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
..++|..+...|.++++.+. ++.|.||+||||||||.+|++.++..+.++. ..-..++.++++|+|.++|+.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 46889999999999999988 5679999999999999999999999887521 11233578999999999999999988
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC---CCCCCCccEEEEcccchhccCCCHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+.+-+..+ ++.+..++|+....... -..++|+|+|||++--.-++. ...++.+.+|||||+|.+-+ ..++.+
T Consensus 184 ~~kkl~~~-gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPL-GISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVL 258 (1230)
T ss_pred Hhhhcccc-cceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchH
Confidence 88776654 79999999998755433 245899999999983222221 12356689999999996554 467777
Q ss_pred HHHHhhC-------CCCCcEEEEEeecchHHHHHHHHhcCCC--eEE-EecCcCCCCCCceEEEEEcCch--hhHHHHHH
Q 013962 159 REVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDP--VQV-KVGKVSSPTANVIQILEKVSEN--EKVDRLLA 226 (433)
Q Consensus 159 ~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 226 (433)
..++.+. ....++|++|||+|+-.. .+ .|++-+ ..+ ...... .+..+.+.+.-.... ......+.
T Consensus 259 EtiVaRtlr~vessqs~IRivgLSATlPN~eD-vA-~fL~vn~~~glfsFd~~y-RPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 259 ETIVARTLRLVESSQSMIRIVGLSATLPNYED-VA-RFLRVNPYAGLFSFDQRY-RPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHhhhhheEEEEeeccCCCHHH-HH-HHhcCCCccceeeecccc-cccceeeeEEeeecccchhhhhhHH
Confidence 7665443 467899999999986533 23 344332 222 222222 222223333222222 11111111
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-----------------------CCceeeecCCCCHHHHHH
Q 013962 227 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----------------------GLHAVALHGGRNQSDRES 283 (433)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-----------------------~~~~~~~~~~~~~~~r~~ 283 (433)
....... ..--..+.+++|||+++......++.|.+. ......+|++|.-.+|..
T Consensus 336 ~~~~~kv--~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 336 EVCYDKV--VEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHH--HHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 1111000 111144577999999999988888887553 123578899999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC-----C------ChhHHHhhcccCCCC--CCceeEEEEecccc
Q 013962 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP-----K------TVEDYVHRIGRTGRG--GSMGQATSFYTDRD 350 (433)
Q Consensus 284 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~-----~------s~~~~~Q~~GR~~R~--g~~g~~~~~~~~~d 350 (433)
+.+.|+.|.++||+||.+++.|+|+|+ .+||+-+.+ . +..+.+|+.|||||. +..|.++++.+.+-
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 999999999999999999999999995 555543332 2 567789999999996 34577777776655
Q ss_pred HHHHHH
Q 013962 351 MLLVAQ 356 (433)
Q Consensus 351 ~~~~~~ 356 (433)
......
T Consensus 493 l~~Y~s 498 (1230)
T KOG0952|consen 493 LDHYES 498 (1230)
T ss_pred HHHHHH
Confidence 444433
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.2e-35 Score=304.18 Aligned_cols=283 Identities=24% Similarity=0.375 Sum_probs=208.6
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
....|+++|+.+++.++.|+++++.||||+|||+ +.++++..+... +.+++|++||++|+.|+++.+..++.
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Qi~~~l~~l~~ 146 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQVAEKISSLAE 146 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3447999999999999999999999999999997 556666555432 78899999999999999999999986
Q ss_pred cCCCce---EEEEECCCCHHHHHH---Hh-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc---------
Q 013962 88 SLDSFK---TAIVVGGTNIAEQRS---EL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--------- 151 (433)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~~~~---~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~--------- 151 (433)
.. ++. ++.++|+.....+.. .+ .++++|+|+||++|.+.+.... . .++++|+||||++++
T Consensus 147 ~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il 222 (1171)
T TIGR01054 147 KA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLL 222 (1171)
T ss_pred hc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHH
Confidence 54 333 335678877654432 22 3458999999999988766421 1 799999999999987
Q ss_pred --CCCHHH-HHHH----------------------HhhCCCCCc--EEEEEeec-chHHHHHHHHhcCCCeEEEecCcCC
Q 013962 152 --MGFEPQ-IREV----------------------MQNLPDKHQ--TLLFSATM-PVEIEALAQEYLTDPVQVKVGKVSS 203 (433)
Q Consensus 152 --~~~~~~-~~~~----------------------~~~~~~~~~--~i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
.+|... +..+ +..++...| ++++|||+ |..... .++.+...+.+.....
T Consensus 223 ~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~ 299 (1171)
T TIGR01054 223 KLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSD 299 (1171)
T ss_pred HHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccc
Confidence 345542 3332 223344444 56789994 443322 3344555555555555
Q ss_pred CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecc---ccHHHHHHHHHHCCCceeeecCCCCHHH
Q 013962 204 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK---TRCDEVSEALVAEGLHAVALHGGRNQSD 280 (433)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 280 (433)
...++.+.+..... +...+...+... +.++||||+++ +.|+.+++.|...|+++..+||+++
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~ll~~l----------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~--- 364 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEIVKKL----------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP--- 364 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHHHHHc----------CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC---
Confidence 56677776654432 223333332211 13489999999 9999999999999999999999987
Q ss_pred HHHHHHHHhcCCCcEEEEe----cccccCcccCC-CcEEEEccCCC
Q 013962 281 RESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLPK 321 (433)
Q Consensus 281 r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~-~~~Vi~~~~~~ 321 (433)
+.+++.|++|+++||||| +++++|+|+|+ ++.||++|.|.
T Consensus 365 -~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 -KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred -HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 368899999999999995 89999999999 89999988763
No 80
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.6e-35 Score=286.92 Aligned_cols=375 Identities=20% Similarity=0.248 Sum_probs=274.2
Q ss_pred cCCCCCCcHHHHHHHHHhhc----C--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALS----G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~----~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
.++| .-||-|..|++.+.+ + -|-+|||+.|.|||.+|+-++....+. |++|.|+|||--|++|.+
T Consensus 590 ~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 590 SFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred cCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcccHHhHHHHH
Confidence 4555 468889999999983 2 368999999999999999888888766 999999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 155 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~ 155 (433)
+.|+.-+..+ .+++..+..-.+.+++...+ .+..+|+|+| +.+......+.+++++||||-|++.-
T Consensus 661 ~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFGV---- 730 (1139)
T COG1197 661 ETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFGV---- 730 (1139)
T ss_pred HHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcCc----
Confidence 9999998876 58888888777776666544 4679999999 66667778899999999999999654
Q ss_pred HHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCC-CceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 156 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
.-++-++.++.+..++-|||||.+.........+++--.+.. .+..+ .+..++...++ .-+.+.+.+..
T Consensus 731 -k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T---PP~~R~pV~T~V~~~d~----~~ireAI~REl-- 800 (1139)
T COG1197 731 -KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT---PPEDRLPVKTFVSEYDD----LLIREAILREL-- 800 (1139)
T ss_pred -cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC---CCCCCcceEEEEecCCh----HHHHHHHHHHH--
Confidence 344455555678889999999988877776666655433322 22222 22222222222 22223333333
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
..++++...+|.++..+.+++.|+.. ...+.+.||.|+..+-+.++..|.+|+++|||||.+.+.|+|+|+++
T Consensus 801 -----~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnAN 875 (1139)
T COG1197 801 -----LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNAN 875 (1139)
T ss_pred -----hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCc
Confidence 45677899999999999999999987 55789999999999999999999999999999999999999999999
Q ss_pred EEEEccCC-CChhHHHhhcccCCCCCCceeEEEEeccccH---HHHHHHHHHhhh-hcccccccchhhhHHHHHHHHHHH
Q 013962 313 HVVNLDLP-KTVEDYVHRIGRTGRGGSMGQATSFYTDRDM---LLVAQIKKAIVD-AESGNAVAFATGKVARRKEREAAA 387 (433)
Q Consensus 313 ~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 387 (433)
++|+-+.. ...++.+|.+||+||....+.||+++.+... .-.+++ +++.+ .+.+..+.++..+...|-.-.-.-
T Consensus 876 TiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL-~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG 954 (1139)
T COG1197 876 TIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRL-EAIASFTELGAGFKLAMHDLEIRGAGNLLG 954 (1139)
T ss_pred eEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHH-HHHHhhhhcCchHHHHhcchhccccccccC
Confidence 99876654 4789999999999999999999999986543 222333 33333 445555666665554332211111
Q ss_pred HhcCCCCccccccccCCCCchHHHHHHHHHhccccccC
Q 013962 388 AQKGATVATSKLSMMGPSVNIEDKYRFMIAASNMKREG 425 (433)
Q Consensus 388 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 425 (433)
.++++ .+...| -|.|-+|+...-.+.++
T Consensus 955 ~eQSG-----~I~~VG-----f~LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 955 EEQSG-----HIESVG-----FDLYMEMLEEAIAALKG 982 (1139)
T ss_pred ccccC-----chheec-----HHHHHHHHHHHHHHHhc
Confidence 11111 112222 57788877766655444
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-36 Score=280.92 Aligned_cols=302 Identities=21% Similarity=0.250 Sum_probs=205.1
Q ss_pred CCCCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
...|++||++|+.++.+ ++..++.+|||+|||.+++..+... +..+|||||+.+|+.||++.+..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHH
Confidence 34699999999999998 7899999999999999886655554 44599999999999999988888
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhh
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 164 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 164 (433)
++.. +..++.+.|+..... . ..|.|+|.+++.............+++||+||||++....+. .+...
T Consensus 103 ~~~~--~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~ 169 (442)
T COG1061 103 FLLL--NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILEL 169 (442)
T ss_pred hcCC--ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHh
Confidence 7632 124455555543211 1 469999999997642111223346999999999998765433 33333
Q ss_pred CCCCCcEEEEEeecchHHHH---HHHHhcCCCeEEEecCcCC------CCCCceEEEEEcCchhhHHH--HH--------
Q 013962 165 LPDKHQTLLFSATMPVEIEA---LAQEYLTDPVQVKVGKVSS------PTANVIQILEKVSENEKVDR--LL-------- 225 (433)
Q Consensus 165 ~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~-------- 225 (433)
+......++|||||+..... ....+++ +..+....... .+.............+.... ..
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 33222289999998633311 1222222 22232221100 00111111110111110000 00
Q ss_pred --------------HHH-HHH--HHhhhhcCC-CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHH
Q 013962 226 --------------ALL-VEE--AFLAEKSCH-PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287 (433)
Q Consensus 226 --------------~~~-~~~--~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 287 (433)
... ... ......... .+.+++||+.+..++..++..+...+. +..+.+..+..+|..+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 000 000 000000001 346799999999999999999998887 8899999999999999999
Q ss_pred HhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCC
Q 013962 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 336 (433)
Q Consensus 288 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 336 (433)
|+.|.+++||++.++.+|+|+|+++++|..++..|+..|.||+||..|.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999999994
No 82
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.8e-35 Score=283.78 Aligned_cols=358 Identities=18% Similarity=0.223 Sum_probs=257.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|.-+.-.+.. .-|+.+.||+|||+++.+|++...+. |..+.+++|+..|+.|.++.+..++..+
T Consensus 80 ~~~dvQlig~l~l~~--G~iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L- 148 (796)
T PRK12906 80 RPFDVQIIGGIVLHE--GNIAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL- 148 (796)
T ss_pred CCchhHHHHHHHHhc--CCcccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc-
Confidence 456666655554444 44999999999999999999998887 8899999999999999999999999987
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cCC---------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DMG--------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~~--------- 153 (433)
++.++++.++.+..+....+ .++|+++|...| +++++.+.. ..+.+.++||||+|.++ +..
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 79999999988777665554 479999999988 666665432 23568899999999643 100
Q ss_pred ------CHHHHHHHHhhCC------------------------------------------C------------------
Q 013962 154 ------FEPQIREVMQNLP------------------------------------------D------------------ 167 (433)
Q Consensus 154 ------~~~~~~~~~~~~~------------------------------------------~------------------ 167 (433)
....+..+...+. .
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0001111111000 0
Q ss_pred --------------------------------------------------------------------CCcEEEEEeecc
Q 013962 168 --------------------------------------------------------------------KHQTLLFSATMP 179 (433)
Q Consensus 168 --------------------------------------------------------------------~~~~i~~SAT~~ 179 (433)
..++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 225667888876
Q ss_pred hHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHH
Q 013962 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS 259 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 259 (433)
....++...|- -..+.++...+..........+.+...+...+...+.... ..+.|+||||++++.++.++
T Consensus 387 ~e~~Ef~~iY~--l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~-------~~g~pvLI~t~si~~se~ls 457 (796)
T PRK12906 387 TEEEEFREIYN--MEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH-------AKGQPVLVGTVAIESSERLS 457 (796)
T ss_pred HHHHHHHHHhC--CCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEEeCcHHHHHHHH
Confidence 55444444442 2234444444433333344455566677777777776543 34567999999999999999
Q ss_pred HHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---CCc-----EEEEccCCCChhHHHhhcc
Q 013962 260 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA-----HVVNLDLPKTVEDYVHRIG 331 (433)
Q Consensus 260 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---~~~-----~Vi~~~~~~s~~~~~Q~~G 331 (433)
+.|.+.++++..+|+.+...++..+.+.++.|. |+|||+++++|+|++ ++. +||+++.|.|...+.|++|
T Consensus 458 ~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~G 535 (796)
T PRK12906 458 HLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRG 535 (796)
T ss_pred HHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhh
Confidence 999999999999999999888888888888877 999999999999994 788 9999999999999999999
Q ss_pred cCCCCCCceeEEEEeccccHHHHH----HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHhcCC
Q 013962 332 RTGRGGSMGQATSFYTDRDMLLVA----QIKKAIVDAES-GNAVAFATGKVARRKEREAAAAQKGA 392 (433)
Q Consensus 332 R~~R~g~~g~~~~~~~~~d~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (433)
|+||+|.+|.+..+++..|..+.. .+.+.+..... ....+.......+..+.++...+...
T Consensus 536 RtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~ 601 (796)
T PRK12906 536 RSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNN 601 (796)
T ss_pred hhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765432 33333322222 12233334444555555555444433
No 83
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-34 Score=280.71 Aligned_cols=359 Identities=19% Similarity=0.215 Sum_probs=259.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|.-.. +.-++.-+..+.||+|||+++.+|++...+. |..+.|++||..|+.|.++.+..++..+
T Consensus 81 ~~~dvQlig~--l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L- 149 (830)
T PRK12904 81 RHFDVQLIGG--MVLHEGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL- 149 (830)
T ss_pred CCCccHHHhh--HHhcCCchhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc-
Confidence 3455555544 4434456999999999999999999765554 5668899999999999999999999887
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cCC---------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DMG--------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~~--------- 153 (433)
+++++++.|+.+..+....+ .++|+|+|+..| +++++.+.. ..+.+.++|+||+|.++ +..
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 89999999999888776665 489999999999 999887653 35679999999999743 100
Q ss_pred ------CHHHHHHHHhhCCC------------------------------------------------------------
Q 013962 154 ------FEPQIREVMQNLPD------------------------------------------------------------ 167 (433)
Q Consensus 154 ------~~~~~~~~~~~~~~------------------------------------------------------------ 167 (433)
....+..+...+..
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 11111122221210
Q ss_pred ---------------------------------------------------------CCcEEEEEeecchHHHHHHHHhc
Q 013962 168 ---------------------------------------------------------KHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 168 ---------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
..++.+||+|......++...|
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY- 386 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY- 386 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh-
Confidence 2356788888876655555555
Q ss_pred CCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee
Q 013962 191 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 270 (433)
.-..+.+++..+..........+....++...+...+.+.. ..+.|+||||++++.++.+++.|...++++.
T Consensus 387 -~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~-------~~grpVLIft~Si~~se~Ls~~L~~~gi~~~ 458 (830)
T PRK12904 387 -NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH-------KKGQPVLVGTVSIEKSELLSKLLKKAGIPHN 458 (830)
T ss_pred -CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH-------hcCCCEEEEeCcHHHHHHHHHHHHHCCCceE
Confidence 33334444444433333344555666778787777775543 3346799999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC--------------------------------------c
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV--------------------------------------A 312 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~--------------------------------------~ 312 (433)
.+|+. ..+|+..+..|..+...|+|||+++++|+|++=- -
T Consensus 459 vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL 536 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGL 536 (830)
T ss_pred eccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCC
Confidence 99995 7789999999999999999999999999999632 2
Q ss_pred EEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHH----HHHHHhhhhcccccccchhhhHHHHHHHHHHHH
Q 013962 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA----QIKKAIVDAESGNAVAFATGKVARRKEREAAAA 388 (433)
Q Consensus 313 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (433)
+||....+.|...-.|..||+||+|.+|.+-.+++..|..+.. .+.+.+.........+.......+..+.++...
T Consensus 537 hVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~ 616 (830)
T PRK12904 537 HVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKV 616 (830)
T ss_pred EEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhchHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999988865432 233333222211222333444555555555554
Q ss_pred hcCCC
Q 013962 389 QKGAT 393 (433)
Q Consensus 389 ~~~~~ 393 (433)
+....
T Consensus 617 e~~~~ 621 (830)
T PRK12904 617 EGRNF 621 (830)
T ss_pred HHHHH
Confidence 44333
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.5e-34 Score=286.10 Aligned_cols=335 Identities=17% Similarity=0.163 Sum_probs=212.1
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 11 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
.|.|||.+++..++.. .++|++.++|.|||+.+.+.+...+... ...++|||||. +|..||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 5999999999887643 4799999999999998866555444332 25689999996 89999999998765
Q ss_pred CCCceEEEEECCCCHHHHH--HHhhCCCcEEEeccHHHHHHH-HcCCCCCCCccEEEEcccchhccCC--CHHHHHHHHh
Q 013962 89 LDSFKTAIVVGGTNIAEQR--SELRGGVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQ 163 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ivv~T~~~l~~~~-~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~ 163 (433)
++...++.++....... ...+...+++|++++.+...- ......-..+++||+||||++.... ....+..+..
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 34444443332111000 012234689999999886421 1111222468999999999997321 2222333322
Q ss_pred hCCCCCcEEEEEeecchH-HH------------------------------------------------HHHHHhcCCC-
Q 013962 164 NLPDKHQTLLFSATMPVE-IE------------------------------------------------ALAQEYLTDP- 193 (433)
Q Consensus 164 ~~~~~~~~i~~SAT~~~~-~~------------------------------------------------~~~~~~~~~~- 193 (433)
.......++++||||... .. ..+..++.+.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 223345689999999210 00 0000111100
Q ss_pred ----------------------------------eEEEecCc--CCCCCCceEEEEEcCchhhHHHHHH-----------
Q 013962 194 ----------------------------------VQVKVGKV--SSPTANVIQILEKVSENEKVDRLLA----------- 226 (433)
Q Consensus 194 ----------------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (433)
+.+..... ...+....+.+. +...+.......
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~-l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIP-LPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEee-cCCCHHHHHHHHHhHHHHHHhhc
Confidence 00000000 000001111110 111111111100
Q ss_pred ---HHHHH---------------HHhhhhcCCCCCeEEEEEeccccHHHHHHHH-HHCCCceeeecCCCCHHHHHHHHHH
Q 013962 227 ---LLVEE---------------AFLAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALRD 287 (433)
Q Consensus 227 ---~~~~~---------------~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~ 287 (433)
.+... .....-....+.++||||+++..+..+.+.| ...|+++..+||+|+..+|..+++.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 00000 0000011123578999999999999999999 4669999999999999999999999
Q ss_pred HhcC--CCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 288 FRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 288 f~~g--~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
|+++ ..+|||||+++++|+|++.+++||+||.|+++..|.||+||++|.|+.+.+.+++...+....+.+
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i 611 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERL 611 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHH
Confidence 9984 589999999999999999999999999999999999999999999999988777765544333333
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=6.1e-34 Score=279.91 Aligned_cols=310 Identities=21% Similarity=0.228 Sum_probs=218.4
Q ss_pred CCCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 10 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~---~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
..|+++|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999974 689999999999999998777666543 7889999999999999999999865
Q ss_pred ccCCCceEEEEECCCCHHHHH----HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC------HH
Q 013962 87 RSLDSFKTAIVVGGTNIAEQR----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF------EP 156 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~------~~ 156 (433)
+..+..++++.+..+.. ....+..+|+|+|++.++ ..+.++++||+||+|....... ..
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 46788888887755433 233456899999998774 4567899999999998764321 11
Q ss_pred HHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcC--CCCCCceEEEEEcCchh-------hHHHHHHH
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENE-------KVDRLLAL 227 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~ 227 (433)
.+ .+......+.+++++||||+......+..- ....+...... ...+.+. ........ -...++..
T Consensus 284 ~v-a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 284 DL-AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVE--IIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HH-HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEE--EEechhhhhhcccCCCCHHHHHH
Confidence 22 223333467889999999986655544321 22222222211 1111111 11111100 01222333
Q ss_pred HHHHHHhhhhcCCCCCeEEEEEeccc------------------------------------------------------
Q 013962 228 LVEEAFLAEKSCHPFPLTIVFVERKT------------------------------------------------------ 253 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~lvf~~~~~------------------------------------------------------ 253 (433)
+.+.. ..+.++|||+|.+.
T Consensus 359 i~~~l-------~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 359 IKQRL-------ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred HHHHH-------HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 33222 23345788877531
Q ss_pred ------cHHHHHHHHHHC--CCceeeecCCCC--HHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC--
Q 013962 254 ------RCDEVSEALVAE--GLHAVALHGGRN--QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK-- 321 (433)
Q Consensus 254 ------~~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~-- 321 (433)
.++.+++.|.+. +.++..+|+++. .++++.+++.|.+|+.+|||+|++++.|+|+|++.+|+.++.+.
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l 511 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGL 511 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhc
Confidence 246788888876 778999999886 46789999999999999999999999999999999997665442
Q ss_pred C----------hhHHHhhcccCCCCCCceeEEEEecccc
Q 013962 322 T----------VEDYVHRIGRTGRGGSMGQATSFYTDRD 350 (433)
Q Consensus 322 s----------~~~~~Q~~GR~~R~g~~g~~~~~~~~~d 350 (433)
+ ...|.|++||+||.+..|.+++.....+
T Consensus 512 ~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 512 FSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred cCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 2 2578999999999999999998776544
No 86
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.7e-34 Score=274.22 Aligned_cols=373 Identities=18% Similarity=0.220 Sum_probs=259.1
Q ss_pred cccCCCCCC---cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 4 IEFHEYTRP---TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 4 ~~~~~~~~~---~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+...||..| +|+|.++++.+..++++++.|+||+|||++|++|++..++. +..++||+||++|+.|.++
T Consensus 82 ~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 82 VEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHH
Confidence 457899998 99999999999999999999999999999999999988765 3458999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCCCCC-------CccEEEEcccchhccC
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTSLS-------RVSFVILDEADRMLDM 152 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~~~~-------~~~~vIiDE~h~~~~~ 152 (433)
.+..++..+ +++++++.|+.+...+...+ +++|+|+||++| ++++..+...++ .+.++|+||||.++-.
T Consensus 154 ~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 154 WVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILID 230 (970)
T ss_pred HHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhh
Confidence 999998876 69999999999988776554 589999999999 999988755444 5689999999975411
Q ss_pred C-------------CHH---HHH----H-----------HH---------------------------------------
Q 013962 153 G-------------FEP---QIR----E-----------VM--------------------------------------- 162 (433)
Q Consensus 153 ~-------------~~~---~~~----~-----------~~--------------------------------------- 162 (433)
. ... .+. . +.
T Consensus 231 EArTPLIISg~~~~~~~~Y~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 310 (970)
T PRK12899 231 EARTPLIISGPGEKHNPVYFELKDKVAELVYLQRELCNRIALEARKVLDPFLDTDILPKDKKVMEGISEACRSLWLVSKG 310 (970)
T ss_pred ccCCceeeeCCCccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhhhcc
Confidence 0 000 000 0 00
Q ss_pred -------hhCCC--------------------------------------------------------------------
Q 013962 163 -------QNLPD-------------------------------------------------------------------- 167 (433)
Q Consensus 163 -------~~~~~-------------------------------------------------------------------- 167 (433)
..+..
T Consensus 311 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v~LTe~G~~~~~~~~~~~~e~~~~~~~ 390 (970)
T PRK12899 311 MPLNRVLRRVREHPDLRAMIDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDFELTDKGMQQWVEKAGGSAEDFVMMDM 390 (970)
T ss_pred ccchhhhhhhhcccchhhhhhhhhhhhhhhhhhhhccccccCCceEEecCCCeeeechhhHHHHhhhccCCHHHHhccch
Confidence 00000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 168 -------------------------------------------------------------------------------- 167 (433)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (433)
T Consensus 391 ~~~~~~i~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~dYiV~dg~V~IVDe~TGR~~~gr~~s~ 470 (970)
T PRK12899 391 GHEYALIEEDETLSPADKINRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVDYIVRDDQIVIIDEHTGRPQPGRRFSE 470 (970)
T ss_pred hhhhhccccccccCHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCCcch
Confidence
Q ss_pred --------------------------------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEc
Q 013962 168 --------------------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV 215 (433)
Q Consensus 168 --------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (433)
..++.+||+|......++...| .-..+.++...+..........+.
T Consensus 471 GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY--~l~v~~iPt~kp~~r~d~~d~iy~ 548 (970)
T PRK12899 471 GLHQAIEAKEHVTIRKESQTFATVTLQNFFRLYEKLAGMTGTAITESREFKEIY--NLYVLQVPTFKPCLRIDHNDEFYM 548 (970)
T ss_pred HHHHHHHhhcCCCCCCCceeeeeehHHHHHhhCchhcccCCCCHHHHHHHHHHh--CCCEEECCCCCCceeeeCCCcEec
Confidence 1123334444332222222222 112222322222222222223445
Q ss_pred CchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcE
Q 013962 216 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNI 295 (433)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 295 (433)
....+..+++..+.+.. ..+.|+||-|.+++..+.++..|.+.+++..++++.....+...+-+.-+.|. |
T Consensus 549 t~~~k~~ai~~ei~~~~-------~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g~--V 619 (970)
T PRK12899 549 TEREKYHAIVAEIASIH-------RKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGA--V 619 (970)
T ss_pred CHHHHHHHHHHHHHHHH-------hCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCCc--E
Confidence 55667777777666554 34567999999999999999999999999999998766555555555555454 9
Q ss_pred EEEecccccCcccC--------CCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhh
Q 013962 296 LVATDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVD 363 (433)
Q Consensus 296 lv~T~~~~~Gidip--------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~ 363 (433)
.|||+++++|.|+. +--+||....+.|...-.|..||+||+|.+|.+..+++..|..+. +.+.+.+..
T Consensus 620 TIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~~~f~~~~i~~~~~~ 699 (970)
T PRK12899 620 TVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFASPKLNTLIRH 699 (970)
T ss_pred EEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHHHHhCcHHHHHHHHH
Confidence 99999999999993 223899999999999999999999999999999999998886553 234443332
Q ss_pred hcccccccchhhhHHHHHHHHHHHHhcCCCCcccc
Q 013962 364 AESGNAVAFATGKVARRKEREAAAAQKGATVATSK 398 (433)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (433)
.......+.......+..+.++...+......+..
T Consensus 700 ~~~~~~~~I~~~~~~~~i~~aQk~vE~~~~~~Rk~ 734 (970)
T PRK12899 700 FRPPEGEAMSDPMFNRLIETAQKRVEGRNYTIRKH 734 (970)
T ss_pred cCCCCCCccccHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22222233344445555555555554444333333
No 87
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-34 Score=276.79 Aligned_cols=367 Identities=18% Similarity=0.206 Sum_probs=266.6
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-++.-|..|+||.|||+++.+|++...+. |..|.|++|+..|+.|.++++..++..+ +
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 455555556666666777999999999999999999988776 6669999999999999999999999886 8
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC-CC-----CCccEEEEcccchhccCC-----------
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT-SL-----SRVSFVILDEADRMLDMG----------- 153 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~-~~-----~~~~~vIiDE~h~~~~~~----------- 153 (433)
++++++.++.+....... ..++|+|+|+..| +++++.+.. .. +.+.++||||+|.++-..
T Consensus 152 lsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 999999998886544333 3689999999999 898887632 22 678999999999643111
Q ss_pred -----CHHHHH-------------------------------------------HHH---hhC---CC------------
Q 013962 154 -----FEPQIR-------------------------------------------EVM---QNL---PD------------ 167 (433)
Q Consensus 154 -----~~~~~~-------------------------------------------~~~---~~~---~~------------ 167 (433)
....+. .++ ..+ ..
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 000000 101 000 00
Q ss_pred --------------------------------------------------------------------------CCcEEE
Q 013962 168 --------------------------------------------------------------------------KHQTLL 173 (433)
Q Consensus 168 --------------------------------------------------------------------------~~~~i~ 173 (433)
..++.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 124557
Q ss_pred EEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccc
Q 013962 174 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 253 (433)
Q Consensus 174 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~ 253 (433)
||+|......++...| .-..+.++...+..........+....++..+++..+.+.. ..+.|+||||.+++
T Consensus 390 MTGTa~te~~Ef~~iY--~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~-------~~GrpVLV~t~sv~ 460 (908)
T PRK13107 390 MTGTADTEAFEFQHIY--GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR-------ERGQPVLVGTVSIE 460 (908)
T ss_pred ccCCChHHHHHHHHHh--CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH-------HcCCCEEEEeCcHH
Confidence 7777765555544444 23334444444444444444555666778888777776544 34567999999999
Q ss_pred cHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC------------------------
Q 013962 254 RCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM------------------------ 309 (433)
Q Consensus 254 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip------------------------ 309 (433)
.++.++..|...++++..+|+.+...++..+.+.|+.|. |+|||+++++|+|+.
T Consensus 461 ~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 461 QSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 999999999999999999999999999999999999999 999999999999995
Q ss_pred -------------CCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccccccc
Q 013962 310 -------------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGNAVAF 372 (433)
Q Consensus 310 -------------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~ 372 (433)
+--+||-...+.|...-.|..||+||+|.+|.+..|++..|..+. +.+.+.+.........++
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i 618 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAI 618 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCcc
Confidence 223899999999999999999999999999999999999887543 233333333222233444
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcccccc
Q 013962 373 ATGKVARRKEREAAAAQKGATVATSKLS 400 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (433)
......+..++++...+......+..+.
T Consensus 619 ~~~~~~~~i~~aQ~~vE~~~~~~Rk~ll 646 (908)
T PRK13107 619 EHPWVSRAIENAQRKVEARNFDIRKQLL 646 (908)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555566666666665554444443333
No 88
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=268.58 Aligned_cols=314 Identities=20% Similarity=0.248 Sum_probs=241.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
++-|+|..|+..+-+++++++.|.|.+|||.++..+++..+.. +.+|++.+|-++|.+|-++++..-++.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 5789999999999999999999999999999998888777665 889999999999999999999987654
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 170 (433)
++.++|+-. ++.++..+|||.+.|..++.++...++.+.+||+||+|.|-+...+-.|.+.+-.+|++.+
T Consensus 199 ---VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 667888764 4567889999999999999999888999999999999999998888889988889999999
Q ss_pred EEEEEeecchHHH--HHHHHhcCCCeEEEecCcCCCCCCceEEE---------EEcCc-----hhhHHHHHHHHHHHHHh
Q 013962 171 TLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQIL---------EKVSE-----NEKVDRLLALLVEEAFL 234 (433)
Q Consensus 171 ~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~~~ 234 (433)
++++|||+|+..+ +++...-..|..+.+....+.+ +.|+. ..++. +++....+..+......
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTP--LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTP--LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCc--ceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 9999999987644 3445555667766554433322 12221 11111 23333334333332221
Q ss_pred hhhc-----------------------------CCCCCeEEEEEeccccHHHHHHHHHHCC-------------------
Q 013962 235 AEKS-----------------------------CHPFPLTIVFVERKTRCDEVSEALVAEG------------------- 266 (433)
Q Consensus 235 ~~~~-----------------------------~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------- 266 (433)
.... .....|+|||+-++++|+.++-.+.+..
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 1000 0123679999999999998887765431
Q ss_pred --------------------CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC------
Q 013962 267 --------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------ 320 (433)
Q Consensus 267 --------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~------ 320 (433)
..+.++|+++-+--++.+.-.|++|-+++|+||.+++.|+|.|.-.+|+- ..-
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~~rKfDG~~ 505 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-AVRKFDGKK 505 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-eccccCCcc
Confidence 23678999999999999999999999999999999999999996555553 221
Q ss_pred ---CChhHHHhhcccCCCCCCc--eeEEEEec
Q 013962 321 ---KTVEDYVHRIGRTGRGGSM--GQATSFYT 347 (433)
Q Consensus 321 ---~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 347 (433)
-|.-+|+||.|||||.|.+ |.|+++++
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEec
Confidence 2677899999999999876 55555554
No 89
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=269.75 Aligned_cols=316 Identities=22% Similarity=0.221 Sum_probs=231.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|-.+|++|+-++..|.+++|+|+|.+|||++|-.++...-. ++.++++.+|-++|.+|-++.|+.-++.
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhccc--
Confidence 577899999999999999999999999999998776655432 3889999999999999999999987654
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 170 (433)
+++++|+.. ++..+.++|||.+.|.+++.++..-++++.+|||||+|.+.+...+-.|.+++-.+|...+
T Consensus 367 ---vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 367 ---VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ---cceeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 337888863 5567899999999999999998888899999999999999998899999999999999999
Q ss_pred EEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhh-----HHHHHHHHHHHHH------------
Q 013962 171 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK-----VDRLLALLVEEAF------------ 233 (433)
Q Consensus 171 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------------ 233 (433)
+|++|||.|+..+..-.-.-.....+.+......+..+.+++......-+ -..+..-+.....
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999999877553221111122223332222223333333322211000 0000000000000
Q ss_pred ------------------------------------------hhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC-----
Q 013962 234 ------------------------------------------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG----- 266 (433)
Q Consensus 234 ------------------------------------------~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----- 266 (433)
...-.....-|++|||-++..|++.++.|...+
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~ 596 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSK 596 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccch
Confidence 000000112469999999999999999986532
Q ss_pred ----------------------------------CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 267 ----------------------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 267 ----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
..+.++||++-+--++-+.-.|+.|-++||+||.++++|+|+|.-.
T Consensus 597 EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARt 676 (1248)
T KOG0947|consen 597 EKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPART 676 (1248)
T ss_pred hHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCcee
Confidence 2367899999999999999999999999999999999999999555
Q ss_pred EEEEccCC---------CChhHHHhhcccCCCCCCc--eeEEEEec
Q 013962 313 HVVNLDLP---------KTVEDYVHRIGRTGRGGSM--GQATSFYT 347 (433)
Q Consensus 313 ~Vi~~~~~---------~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 347 (433)
+|+ .... -.+-+|.||+|||||.|-+ |.++++..
T Consensus 677 vVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 677 VVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred EEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 555 3322 2688999999999999875 55555554
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.8e-33 Score=263.00 Aligned_cols=292 Identities=21% Similarity=0.246 Sum_probs=198.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH---
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ--- 106 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 106 (433)
++.+|||||||.+|+..+...+.. ++++||++|+++|+.|+++.+++.+ +..+..++++.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHH
Confidence 578999999999987655444332 7889999999999999999999875 3567778887765443
Q ss_pred -HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-----CH-HHHHHHHhhCCCCCcEEEEEeecc
Q 013962 107 -RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-PQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 107 -~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.....+..+|+|+|+..++ ..+.++++|||||+|....+. |. ..+...... ..+.++|++||||+
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPs 140 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCC
Confidence 2233456899999998774 356789999999999876432 11 123233333 35788999999998
Q ss_pred hHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhh----HHHHHHHHHHHHHhhhhcCCCCCeEEEEEecccc-
Q 013962 180 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK----VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR- 254 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~- 254 (433)
.+....+.. +....................+.......+ ...++..+.+.. ..++++|||+|++..
T Consensus 141 les~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l-------~~g~qvLvflnrrGya 211 (505)
T TIGR00595 141 LESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL-------AAGEQSILFLNRRGYS 211 (505)
T ss_pred HHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH-------HcCCcEEEEEeCCcCC
Confidence 665444322 121122221111111111111111211111 122333333322 334569999887643
Q ss_pred -----------------------------------------------------------HHHHHHHHHHC--CCceeeec
Q 013962 255 -----------------------------------------------------------CDEVSEALVAE--GLHAVALH 273 (433)
Q Consensus 255 -----------------------------------------------------------~~~l~~~L~~~--~~~~~~~~ 273 (433)
.+.+.+.|.+. +.++..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 37788888876 67899999
Q ss_pred CCCCHHHH--HHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC------------ChhHHHhhcccCCCCCCc
Q 013962 274 GGRNQSDR--ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK------------TVEDYVHRIGRTGRGGSM 339 (433)
Q Consensus 274 ~~~~~~~r--~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~------------s~~~~~Q~~GR~~R~g~~ 339 (433)
++++...+ ..+++.|.+|+.+|||+|++++.|+|+|++.+|+.++... ....|.|++||+||.+..
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 99887665 8899999999999999999999999999999987554432 246789999999999888
Q ss_pred eeEEEEecccc
Q 013962 340 GQATSFYTDRD 350 (433)
Q Consensus 340 g~~~~~~~~~d 350 (433)
|.+++.....+
T Consensus 372 g~viiqt~~p~ 382 (505)
T TIGR00595 372 GQVIIQTYNPN 382 (505)
T ss_pred CEEEEEeCCCC
Confidence 99887664433
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.2e-32 Score=278.00 Aligned_cols=309 Identities=23% Similarity=0.314 Sum_probs=206.6
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH----HHHHHHHHHHHHHhcc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR----ELAQQIEKEVKALSRS 88 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~----~L~~q~~~~~~~~~~~ 88 (433)
+.+-.+.+..+.+++.++++|+||||||. .+|.+..... .+....+++..|++ +|+.|+++++..-.+.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-----~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-----RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-----CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34555677777788889999999999997 3553322211 11123455566864 7777777766643222
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccc-hhccCCCHHH-HHHHHhhCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLP 166 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h-~~~~~~~~~~-~~~~~~~~~ 166 (433)
.++.-.... +....+++|+|+|++.|++.+... ..+.++++||||||| ++++.++... +..++.. .
T Consensus 149 ----~VGY~vrf~------~~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 149 ----CVGYKVRFN------DQVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred ----eeceeecCc------cccCCCCCEEEEChHHHHHHHhcC-CccccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 222211111 112356899999999999988764 448899999999999 5777665542 3333332 2
Q ss_pred CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh---hHHHHHHHHHHHHHhhhhcCCCCC
Q 013962 167 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE---KVDRLLALLVEEAFLAEKSCHPFP 243 (433)
Q Consensus 167 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 243 (433)
+..|+|+||||++.. .+...+...| .+.+.... ..+...+....... +.+.+...+....... ..+.+
T Consensus 217 pdlKvILmSATid~e--~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~---~~~~G 287 (1294)
T PRK11131 217 PDLKVIITSATIDPE--RFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG---REGPG 287 (1294)
T ss_pred CCceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHh---cCCCC
Confidence 467999999999743 3444443344 34433222 12333333332211 1122222111111111 12345
Q ss_pred eEEEEEeccccHHHHHHHHHHCCCc---eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC-
Q 013962 244 LTIVFVERKTRCDEVSEALVAEGLH---AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL- 319 (433)
Q Consensus 244 ~~lvf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~- 319 (433)
.+|||+++..+++.+++.|...+++ +..+||++++.+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 288 dILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCc
Confidence 6999999999999999999987664 6789999999999999875 477899999999999999999999999863
Q ss_pred --------------C---CChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 320 --------------P---KTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 320 --------------~---~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
| .|..+|.||+||+||. .+|.|+.+|+..+..
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 2 3568899999999999 679999999987654
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-31 Score=226.20 Aligned_cols=312 Identities=19% Similarity=0.184 Sum_probs=224.5
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+++|.|+.+-+.+. +.++.++.|-||+|||.. +...++..+.+ |.++.+.+|+...+.+.+.+++.-+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 58999999988777 467899999999999975 45666666654 9999999999999999999999877
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~ 166 (433)
. +..+..++|+.+.. ....++|+|...|+++.. .++++||||+|.+.-..-......+.+..+
T Consensus 169 ~---~~~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 S---NCDIDLLYGDSDSY-------FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred c---cCCeeeEecCCchh-------ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 4 67888999987632 126899999998887654 389999999998765433334444555566
Q ss_pred CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHH-H--HHHHHHHHHHhhhhcCCCCC
Q 013962 167 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD-R--LLALLVEEAFLAEKSCHPFP 243 (433)
Q Consensus 167 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 243 (433)
.....|.+||||+...+..+..- +-..+.........+-+...+.+.....+.. . +...+........ ..+.
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~---~~~~ 306 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR---KTGR 306 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH---hcCC
Confidence 77789999999997776654433 2223344433333333333444444433221 1 2222222222211 3446
Q ss_pred eEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC-
Q 013962 244 LTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP- 320 (433)
Q Consensus 244 ~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~- 320 (433)
|++||+++++..+.+++.|+.. ...+...|+ .+..|.+..++|++|++.+||+|.++++|+.+|++++++.-...
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 7999999999999999999554 335567777 45688999999999999999999999999999999987765433
Q ss_pred -CChhHHHhhcccCCCC--CCceeEEEEeccccHHHH
Q 013962 321 -KTVEDYVHRIGRTGRG--GSMGQATSFYTDRDMLLV 354 (433)
Q Consensus 321 -~s~~~~~Q~~GR~~R~--g~~g~~~~~~~~~d~~~~ 354 (433)
.+.+..+|+.||+||. ...|.+..+-........
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 6889999999999996 345666655544444433
No 93
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-32 Score=268.85 Aligned_cols=321 Identities=21% Similarity=0.258 Sum_probs=235.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.+| .|-++|++++..+..+.++++++|||+|||+++..++...+.. +.++++++|.++|.+|.++++...+
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHh
Confidence 455 6889999999999999999999999999999988777766655 7779999999999999999999877
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~ 166 (433)
... .-.+++++|+.. +++++.++|+|.+.|.+++.++...+.++..||+||+|.+.+...+..|..++..+|
T Consensus 187 gdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 187 GDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 543 234678888875 557899999999999999999888899999999999999999999999999999999
Q ss_pred CCCcEEEEEeecchHHHH--HHHHhcCCCeEEEecCcCCCCCCceEEEEE------cCchhh-----HHHHHHHHHHH--
Q 013962 167 DKHQTLLFSATMPVEIEA--LAQEYLTDPVQVKVGKVSSPTANVIQILEK------VSENEK-----VDRLLALLVEE-- 231 (433)
Q Consensus 167 ~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~-- 231 (433)
...++++||||.++..+. ++...-..+..+...... +.+-..+++.. ++...+ .......+...
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R-pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR-PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC-CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 999999999999876443 333333344444333222 22221111111 111111 01011111100
Q ss_pred -HHh------------------------------hhhcCCCCCeEEEEEeccccHHHHHHHHHHC---------------
Q 013962 232 -AFL------------------------------AEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------------- 265 (433)
Q Consensus 232 -~~~------------------------------~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--------------- 265 (433)
... ........-|+|+|+-++..|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 000 0000122356999999999998777666421
Q ss_pred -------------CC-------------ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 266 -------------GL-------------HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 266 -------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
++ .+.++|++|-+..+..+.+.|+.|-++|+++|.+++.|+|+|.-.+|+ ...
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l 496 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSL 496 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eee
Confidence 11 245789999999999999999999999999999999999999655554 322
Q ss_pred ---------CCChhHHHhhcccCCCCCCc--eeEEEEe
Q 013962 320 ---------PKTVEDYVHRIGRTGRGGSM--GQATSFY 346 (433)
Q Consensus 320 ---------~~s~~~~~Q~~GR~~R~g~~--g~~~~~~ 346 (433)
.-++.+|.|+.|||||.|.+ |.++++.
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEec
Confidence 23789999999999999986 5555553
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.1e-32 Score=262.94 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=238.5
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCC---CCceEEEEcCcHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~---~~~~~lvl~P~~~L~~q~~~ 80 (433)
.+.|..++.+.|.....+.+.+ .+++++||||+|||.++++.+++.+-.+.....+ ...++++++|.++|++.|..
T Consensus 303 aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 303 AFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 3678888999999999988865 5899999999999999999999998775432211 13489999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCC---CCCccEEEEcccchhccCCCHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS---LSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~---~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
.|.+....+ ++.|...+|+.......- ..+.|+|+|||+. +.+.++..+ ..-++++|+||.|.+-+. .++.
T Consensus 383 sfSkRla~~-GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpv 456 (1674)
T KOG0951|consen 383 SFSKRLAPL-GITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPV 456 (1674)
T ss_pred HHHhhcccc-CcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccc-cchH
Confidence 998887765 799999999976443322 3479999999998 344433222 224789999999965443 6777
Q ss_pred HHHHHhhC-------CCCCcEEEEEeecchHHHHHHHHhcC-C-CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHH
Q 013962 158 IREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLT-D-PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 228 (433)
Q Consensus 158 ~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (433)
+..+..+. ...++++++|||+|+.... ..|+. + +.....+... .+..+.+-+.-+........ ...+
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV--~~Fl~v~~~glf~fd~sy-RpvPL~qq~Igi~ek~~~~~-~qam 532 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATLPNYEDV--ASFLRVDPEGLFYFDSSY-RPVPLKQQYIGITEKKPLKR-FQAM 532 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccCCchhhh--HHHhccCcccccccCccc-CcCCccceEeccccCCchHH-HHHH
Confidence 76654433 3578999999999976443 23332 2 2222222222 23334444554444333222 2222
Q ss_pred HHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHH-------------------------------------CCCceee
Q 013962 229 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-------------------------------------EGLHAVA 271 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~ 271 (433)
.+..+...-.....+++|||+.++++.-+.++.++. ....+..
T Consensus 533 Ne~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaI 612 (1674)
T KOG0951|consen 533 NEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAI 612 (1674)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcccee
Confidence 222222222223336799999999988777776652 1245789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE----EccCC------CChhHHHhhcccCCCCCCc--
Q 013962 272 LHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----NLDLP------KTVEDYVHRIGRTGRGGSM-- 339 (433)
Q Consensus 272 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~~------~s~~~~~Q~~GR~~R~g~~-- 339 (433)
+|++|+..+|..+.+.|..|.++|+|+|.+++.|+|+|+-.++| .|++. .++.+.+||.||+||.+.+
T Consensus 613 HhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951|consen 613 HHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred eccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcC
Confidence 99999999999999999999999999999999999999655555 23332 3799999999999998653
Q ss_pred eeEEEEeccccHHHHH
Q 013962 340 GQATSFYTDRDMLLVA 355 (433)
Q Consensus 340 g~~~~~~~~~d~~~~~ 355 (433)
|.++++....+.....
T Consensus 693 gegiiit~~se~qyyl 708 (1674)
T KOG0951|consen 693 GEGIIITDHSELQYYL 708 (1674)
T ss_pred CceeeccCchHhhhhH
Confidence 5666666555544433
No 95
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.3e-31 Score=269.58 Aligned_cols=375 Identities=19% Similarity=0.254 Sum_probs=238.9
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEE
Q 013962 16 QAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 95 (433)
Q Consensus 16 Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 95 (433)
..+.+..+.+++.++|.|+||||||.. +|.+..-.. .+....+++.-|++.-+...+..+....+.-.+-.++
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 356777777778899999999999974 444332211 1124467778899988888888887765432233333
Q ss_pred EEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccc-hhccCCCHHH-HHHHHhhCCCCCcEEE
Q 013962 96 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLL 173 (433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~i~ 173 (433)
.-....+ ....++.|.|+|++.|+..+... ..+.++++|||||+| +.++.++... +..++... +..++|+
T Consensus 145 Y~vR~~~------~~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIl 216 (1283)
T TIGR01967 145 YKVRFHD------QVSSNTLVKLMTDGILLAETQQD-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIII 216 (1283)
T ss_pred eEEcCCc------ccCCCceeeeccccHHHHHhhhC-cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEE
Confidence 3222211 12356789999999999888764 457889999999999 5777665543 45554433 5778999
Q ss_pred EEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc------hhhHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 013962 174 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPLTIV 247 (433)
Q Consensus 174 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 247 (433)
||||++. ..+...+...|. +.+..... .+...+..... ......+...+..... ...+.+||
T Consensus 217 mSATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~------~~~GdILV 284 (1283)
T TIGR01967 217 TSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA------EGPGDILI 284 (1283)
T ss_pred EeCCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh------hCCCCEEE
Confidence 9999974 344444433443 33332211 12222222211 1122223333322111 12356999
Q ss_pred EEeccccHHHHHHHHHHCC---CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC----
Q 013962 248 FVERKTRCDEVSEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP---- 320 (433)
Q Consensus 248 f~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~---- 320 (433)
|+++..+++.+++.|...+ ..+..+||.++.+++..+++.+ +..+|+|||+++++|+|+|++++||+++.+
T Consensus 285 FLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~ 362 (1283)
T TIGR01967 285 FLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISR 362 (1283)
T ss_pred eCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccc
Confidence 9999999999999998764 4578899999999999986543 246899999999999999999999999854
Q ss_pred --------------CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHH----------HHHHhhhh-----ccccccc
Q 013962 321 --------------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ----------IKKAIVDA-----ESGNAVA 371 (433)
Q Consensus 321 --------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~----------~~~~~~~~-----~~~~~~~ 371 (433)
.|..+|.||.||+||.+ +|.|+.+|+..+...... +...+... .....+.
T Consensus 363 yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~ 441 (1283)
T TIGR01967 363 YSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFP 441 (1283)
T ss_pred cccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCccccc
Confidence 36689999999999997 799999998776543221 11111111 1112233
Q ss_pred chhhhHHHHHHHHHHHHhcCCCCccc----cccccCC---CCchHHHHHHHHHhcc
Q 013962 372 FATGKVARRKEREAAAAQKGATVATS----KLSMMGP---SVNIEDKYRFMIAASN 420 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~---~~~~~~~~~~~~~~~~ 420 (433)
|...-.....+.+......-+..... .+...|. .+.+..++.+|+..+.
T Consensus 442 fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~ 497 (1283)
T TIGR01967 442 FIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAH 497 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhh
Confidence 33333333333333333322222222 3666676 7778888888887765
No 96
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=4.3e-31 Score=261.51 Aligned_cols=313 Identities=21% Similarity=0.216 Sum_probs=201.6
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
..+|+|+|+.+.........++|.+|||+|||.+++..+... ... +...+++|..||.++++|+++++.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l-~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRL-IDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHH-HHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 458999999886554455679999999999999887665543 332 12578999999999999999999876543
Q ss_pred C-CCceEEEEECCCCHHH------------------------HHHHhhC---CCcEEEeccHHHHHHHHcC-CCCCCC--
Q 013962 89 L-DSFKTAIVVGGTNIAE------------------------QRSELRG---GVSIVVATPGRFLDHLQQG-NTSLSR-- 137 (433)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~------------------------~~~~~~~---~~~Ivv~T~~~l~~~~~~~-~~~~~~-- 137 (433)
. ....+...+|...... +...... -.+|+|+|.+.++...... ...++.
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 2345556655433111 0000001 1589999999887544432 122222
Q ss_pred --ccEEEEcccchhccCCCHHHHHHHHhhC-CCCCcEEEEEeecchHHHHHHHHhcCCC--eE-------EE-ec-----
Q 013962 138 --VSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDP--VQ-------VK-VG----- 199 (433)
Q Consensus 138 --~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~-------~~-~~----- 199 (433)
-++|||||+|.+-. .....+..++..+ .....+|+||||+|......+...+... .. +. ..
T Consensus 438 La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 34899999997632 1233344444433 2356799999999987765443322110 00 00 00
Q ss_pred ---CcCC-C-CCCceEE-EEEc--CchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC---Cc
Q 013962 200 ---KVSS-P-TANVIQI-LEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---LH 268 (433)
Q Consensus 200 ---~~~~-~-~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~---~~ 268 (433)
.... . .+..... +... ........+...+.+.. ..+++++||||+++.++.+++.|++.. ..
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-------~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-------NAGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-------hcCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 0000 0 0000000 1111 11111223333333322 234679999999999999999999764 57
Q ss_pred eeeecCCCCHHHHH----HHHHHH-hcCC---CcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCC
Q 013962 269 AVALHGGRNQSDRE----SALRDF-RNGS---TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS 338 (433)
Q Consensus 269 ~~~~~~~~~~~~r~----~~~~~f-~~g~---~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 338 (433)
+..+||.++..+|. ++++.| ++|+ ..|||||++++.|+|+ +++++|....| ...++||+||++|.+.
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999999994 567788 5565 4799999999999999 58999988777 6899999999999865
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=5.6e-31 Score=268.09 Aligned_cols=320 Identities=18% Similarity=0.215 Sum_probs=200.4
Q ss_pred CCCcHHHHHHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~-----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+|+||.+|+..+.. .++++++++||||||.+++..+ ..+.... ..+++|||+|+.+|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 3599999999988762 3579999999999999865443 4444321 257899999999999999999988
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-----CCCCCCccEEEEcccchhccC-------
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDM------- 152 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-----~~~~~~~~~vIiDE~h~~~~~------- 152 (433)
+.... ......+.+...... .......+|+|+|++++...+... ...+..+++||+||||+....
T Consensus 486 ~~~~~-~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEG-DQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccc-ccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 63210 101111111110011 112245799999999997765432 134677999999999985310
Q ss_pred --------CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeE---------------------EEecCcCC
Q 013962 153 --------GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQ---------------------VKVGKVSS 203 (433)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 203 (433)
.+...+..++..+. ...|+|||||..... .+++.|.. +.......
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 02356777777653 568999999974332 22223221 11100000
Q ss_pred -----CCCCce---E---EE--EEcCchh--hHHH---------HHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHH
Q 013962 204 -----PTANVI---Q---IL--EKVSENE--KVDR---------LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS 259 (433)
Q Consensus 204 -----~~~~~~---~---~~--~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~ 259 (433)
....+. . .+ ...+... .... ....+.+........ ...+++||||.++++|+.+.
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~-~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP-TGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc-cCCCcEEEEEcCHHHHHHHH
Confidence 000000 0 00 0000000 0000 001111111111111 22368999999999999999
Q ss_pred HHHHHC------C---CceeeecCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCcccCCCcEEEEccCCCChhHHHhh
Q 013962 260 EALVAE------G---LHAVALHGGRNQSDRESALRDFRNGST-NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHR 329 (433)
Q Consensus 260 ~~L~~~------~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~ 329 (433)
+.|.+. + ..+..++|.++ ++..++++|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|.||
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Qm 793 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQM 793 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHH
Confidence 887653 1 24556888764 56789999999876 689999999999999999999999999999999999
Q ss_pred cccCCCCCC--ceeEEEEec
Q 013962 330 IGRTGRGGS--MGQATSFYT 347 (433)
Q Consensus 330 ~GR~~R~g~--~g~~~~~~~ 347 (433)
+||+.|... .....+++.
T Consensus 794 IGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 794 LGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HhhhccCCccCCCceEEEEe
Confidence 999999754 244444443
No 98
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.2e-31 Score=261.58 Aligned_cols=316 Identities=16% Similarity=0.187 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+|+|||.++++.+. .+.+.|++..+|.|||+.++.. +..+... ++..+.+|||||. ++..||.+++.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~----~~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEY----RGITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHh----cCCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 68999999999886 4678999999999999876543 3333331 1124578999995 77788999999987
Q ss_pred ccCCCceEEEEECCCCHHHHHH---HhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
. .+.+..+.|......... .....++|+|+|++.+...... ..-..+++||+||||++.+. .......+.
T Consensus 243 p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 243 P---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred C---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 3 567777777654322111 1235689999999998654322 22235889999999999874 344555556
Q ss_pred hCCCCCcEEEEEeecchHHH-H---HHH--------------HhcCC------------------CeEEE-ecC-c-CCC
Q 013962 164 NLPDKHQTLLFSATMPVEIE-A---LAQ--------------EYLTD------------------PVQVK-VGK-V-SSP 204 (433)
Q Consensus 164 ~~~~~~~~i~~SAT~~~~~~-~---~~~--------------~~~~~------------------~~~~~-~~~-~-~~~ 204 (433)
.+.. ...+++||||..+-. + ++. .++.. |..+. ... . ...
T Consensus 316 ~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 6653 346889999932111 1 000 00000 00000 000 0 000
Q ss_pred CCCceEEEEEc---------------------------------------------------------------CchhhH
Q 013962 205 TANVIQILEKV---------------------------------------------------------------SENEKV 221 (433)
Q Consensus 205 ~~~~~~~~~~~---------------------------------------------------------------~~~~~~ 221 (433)
++... ....+ ....+.
T Consensus 395 PpK~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl 473 (1033)
T PLN03142 395 PPKKE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKM 473 (1033)
T ss_pred CCcee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHH
Confidence 00000 00000 000111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC---CCcEEEE
Q 013962 222 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVA 298 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~ 298 (433)
..+...+.. ....+.++|||+.....+..+.+.|...++.+..++|+++..+|..+++.|++. ..-+|++
T Consensus 474 ~lLdkLL~~-------Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 474 VLLDKLLPK-------LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred HHHHHHHHH-------HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 111111111 113457899999999999999999999999999999999999999999999863 2357889
Q ss_pred ecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEecc
Q 013962 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 299 T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
|.+++.|+|+..+++||+||++||+....|++||++|.|+...|.++...
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLI 596 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 596 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999998887666543
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=235.88 Aligned_cols=294 Identities=29% Similarity=0.515 Sum_probs=222.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCC--CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 013962 64 LALVLAPTRELAQQIEKEVKALSRSLD--SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 141 (433)
Q Consensus 64 ~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 141 (433)
..+|+-|+++|++|.+..+++|-.... .++...+.|+.....+...+.++.+|+|+||.++.+.+......+....++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 789999999999999998888765543 445557888888888888888999999999999999999888888899999
Q ss_pred EEcccchhccCCCHHHHHHHHhhCCC------CCcEEEEEeecch-HHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEE
Q 013962 142 ILDEADRMLDMGFEPQIREVMQNLPD------KHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK 214 (433)
Q Consensus 142 IiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (433)
++||++.++..++...+..+-..++. ..|.+.+|||+.. ++....+..+.-|..+........+..+.+....
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999999998888888777666642 4588999999843 2233344455555555555444433333333322
Q ss_pred cCch------------------------------hhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHH
Q 013962 215 VSEN------------------------------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 264 (433)
Q Consensus 215 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~ 264 (433)
+.+. +........+....-........-.+.||||.++..|..+.+++.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 2111 1111112222211111112223346699999999999999999988
Q ss_pred CC---CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCcee
Q 013962 265 EG---LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 341 (433)
Q Consensus 265 ~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 341 (433)
.+ +.|+.+|++..+.+|.+.++.|++++++.||||+++++|+|+.++-.+|++..|.+...|++|+||+||...-|.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcce
Confidence 74 578999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EEEEeccccHHHHHHH
Q 013962 342 ATSFYTDRDMLLVAQI 357 (433)
Q Consensus 342 ~~~~~~~~d~~~~~~~ 357 (433)
++.++.......+...
T Consensus 608 aislvat~~ekvwyh~ 623 (725)
T KOG0349|consen 608 AISLVATVPEKVWYHW 623 (725)
T ss_pred eEEEeeccchheeehh
Confidence 8887755443333333
No 100
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=5.3e-30 Score=242.08 Aligned_cols=368 Identities=20% Similarity=0.191 Sum_probs=265.2
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|.-+...++.|+ ++.|.||+|||+++.+|++...+. |..+.+++|+..|+.|.++++..++..+
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L- 146 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL- 146 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 57777888777777654 889999999999999999988877 8889999999999999999999999887
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhccCC----------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRMLDMG---------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~~~~---------- 153 (433)
+++++++.++.+..+....+ .++|+++|...| +++++.+.. ..+.+.++||||+|.++-..
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 79999999988877665554 479999999888 666665432 23568899999999632100
Q ss_pred -----CHHHHHHHHhhCCC-------------------------------------------------------------
Q 013962 154 -----FEPQIREVMQNLPD------------------------------------------------------------- 167 (433)
Q Consensus 154 -----~~~~~~~~~~~~~~------------------------------------------------------------- 167 (433)
.......+...+.+
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 00011111111100
Q ss_pred ---------------------------------------------------------CCcEEEEEeecchHHHHHHHHhc
Q 013962 168 ---------------------------------------------------------KHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 168 ---------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
..++.+||+|......++..-|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 23567888888766666555553
Q ss_pred CCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee
Q 013962 191 TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 270 (433)
-+ .+.++...+..........+....++..+++..+.+.. ..+.|+||.+.+++..+.+++.|.+.++++.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~-------~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~ 455 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVH-------ETGQPVLVGTHDVAESEELAERLRAAGVPAV 455 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHH-------HcCCCEEEEeCCHHHHHHHHHHHHhCCCcce
Confidence 22 34444444443333344555666777777777776654 4557799999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---------------CCcEEEEccCCCChhHHHhhcccCCC
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---------------GVAHVVNLDLPKTVEDYVHRIGRTGR 335 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---------------~~~~Vi~~~~~~s~~~~~Q~~GR~~R 335 (433)
++++.....+-..+-+.-+.|. |.|||+++++|.|+. +--+||....+.|...-.|..||+||
T Consensus 456 vLNAk~~~~EA~IIa~AG~~ga--VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGR 533 (764)
T PRK12326 456 VLNAKNDAEEARIIAEAGKYGA--VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGR 533 (764)
T ss_pred eeccCchHhHHHHHHhcCCCCc--EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccccc
Confidence 9999766666555555555555 999999999999995 22389999999999999999999999
Q ss_pred CCCceeEEEEeccccHHHHHHHHH-HhhhhcccccccchhhhHHHHHHHHHHHHhcCCCCccccccccC
Q 013962 336 GGSMGQATSFYTDRDMLLVAQIKK-AIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMG 403 (433)
Q Consensus 336 ~g~~g~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 403 (433)
+|.+|.+..|++..|..+...--+ ... .......+.......+..+.+++..+......+..+..+.
T Consensus 534 QGDpGss~f~lSleDdl~~~f~~~~~~~-~~~~~~~~i~~~~~~~~i~~aQk~vE~~~~~~Rk~~~~yd 601 (764)
T PRK12326 534 QGDPGSSVFFVSLEDDVVAANLAGEKLP-AQPDEDGRITSPKAADLVDHAQRVAEGQLLEIHANTWRYN 601 (764)
T ss_pred CCCCCceeEEEEcchhHHHhcCchhhhh-cCCCCCCcCcChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999888655322111 111 1112234566667777778887777666555555544443
No 101
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1e-30 Score=253.73 Aligned_cols=370 Identities=18% Similarity=0.191 Sum_probs=260.7
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-++.-|..|.||-|||+++.+|++...+. |..|-||+.+..|+..-++++..++..+ +
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~fl-G 207 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFH-G 207 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHh-C
Confidence 667777777777777778999999999999999999988887 7889999999999999999999999887 8
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-c----------C-
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-D----------M- 152 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~----------~- 152 (433)
++++++..+.+....... ..++|+++|...| +++|+.+.. ..+.+.+.||||++.++ + .
T Consensus 208 LtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeARTPLIISgp~ 285 (1025)
T PRK12900 208 LSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEARTPLIISGPV 285 (1025)
T ss_pred CeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhccccCceEEeCCC
Confidence 999999887777665544 4589999999888 777776532 23568999999999643 1 0
Q ss_pred --CCHH-------HHHHH---------------------------------------------HhhCCC-----------
Q 013962 153 --GFEP-------QIREV---------------------------------------------MQNLPD----------- 167 (433)
Q Consensus 153 --~~~~-------~~~~~---------------------------------------------~~~~~~----------- 167 (433)
+... ....+ ++.+..
T Consensus 286 ~~~~~~~y~~~~~~~~~lv~~q~~l~~~~l~ea~~~~~~~~~~~~~~~~l~~~~~g~pknk~lik~L~~~~~~~~~~~~e 365 (1025)
T PRK12900 286 PNADNSKFQEIKPWIEQLVRAQQNLVASYLTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKMLSQQGIAKLVQSTE 365 (1025)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhhhhhccCcchhHHHHHhhhhhhhhhhhhhh
Confidence 0000 00000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 168 -------------------------------------------------------------------------------- 167 (433)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (433)
T Consensus 366 ~~y~~dn~~~~~~~~~~~~~~iDek~~~v~LTe~G~~~~e~~~~~d~~~Fvlp~~~~~~~~ie~~~~l~~~~~~~~~~~l 445 (1025)
T PRK12900 366 NEYLKDNSSRMHEVDDELYFAVDEKANTIDLTDKGREFLSKLSHQDSDLFLLPDVGTEIAAIESDASLSAADKIKKKDEV 445 (1025)
T ss_pred hHhhhhhhhhccccCCCCeEEEEcCCCeeeecHhHHHHHHhhhccCchhhcccchhhhhhhhhcccccchhhhhhhhhHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 013962 168 -------------------------------------------------------------------------------- 167 (433)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (433)
T Consensus 446 ~~~~~~~~~~~h~i~qaLkA~~lf~kD~~YvV~dgkV~IVDe~TGRim~gRr~sdGLHQaIEaKE~v~i~~e~~t~AtIT 525 (1025)
T PRK12900 446 YRLFAERSERLHNISQLLKAYSLFERDDEYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATIT 525 (1025)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCccCCCCCcchHHHHHHHHHcCCCCCCCceeeeeee
Confidence
Q ss_pred -------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 168 -------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 168 -------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
..++-+||+|......++..-| .-..+.++...+..........+....++...+...+.... .
T Consensus 526 ~QnfFr~Y~kLaGMTGTA~te~~Ef~~iY--~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~-------~ 596 (1025)
T PRK12900 526 IQNFFRLYKKLAGMTGTAETEASEFFEIY--KLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQ-------K 596 (1025)
T ss_pred HHHHHHhchhhcccCCCChhHHHHHHHHh--CCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHh-------h
Confidence 0112223333222222222222 11222233323222333333445556677777777776543 3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---CCc-----
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GVA----- 312 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---~~~----- 312 (433)
.+.|+||||+|++.++.+++.|...++++..+|+ .+.+|+..+..|..+...|+|||+++++|+|++ .|.
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 4567999999999999999999999999999997 678999999999999999999999999999998 443
Q ss_pred EEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHH----HHHHHhhhhcccccccchhhhHHHHHHHHHHHH
Q 013962 313 HVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA----QIKKAIVDAESGNAVAFATGKVARRKEREAAAA 388 (433)
Q Consensus 313 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (433)
+||.+..|.|...|.|++||+||+|.+|.+.+|++..|..+.. .+.+.+.........++..+...+..++++...
T Consensus 675 ~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie~AQk~v 754 (1025)
T PRK12900 675 FILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIERAQKKV 754 (1025)
T ss_pred eeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998865421 344444333333344555666677777777777
Q ss_pred hcCCCCccccccccC
Q 013962 389 QKGATVATSKLSMMG 403 (433)
Q Consensus 389 ~~~~~~~~~~~~~~g 403 (433)
+......+..+..+.
T Consensus 755 E~~nf~iRk~lleyD 769 (1025)
T PRK12900 755 EEQNFAIRKRLLEYD 769 (1025)
T ss_pred HHHhHHHHHHHHHHH
Confidence 666555554444443
No 102
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=9e-30 Score=246.36 Aligned_cols=365 Identities=19% Similarity=0.200 Sum_probs=260.2
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-++.-|+.|.||+|||+++.+|++...+. |..|.+++|+..|+.|.++.+..++..+ +
T Consensus 81 m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l-G 151 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL-G 151 (913)
T ss_pred CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc-C
Confidence 566666667777767778999999999999999999888776 8889999999999999999999999887 7
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCCC------CCCccEEEEcccchhc-cCC----------
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTS------LSRVSFVILDEADRML-DMG---------- 153 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~~------~~~~~~vIiDE~h~~~-~~~---------- 153 (433)
+.++++.++....+....+. ++|+|+|...| +++++.+... .+.+.++||||+|.++ +..
T Consensus 152 l~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~ 229 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQA 229 (913)
T ss_pred CEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCC
Confidence 99999999888776666554 89999999988 6666655321 3679999999999642 100
Q ss_pred -----CHHHHHHHHhhC---------------------------------------------------------------
Q 013962 154 -----FEPQIREVMQNL--------------------------------------------------------------- 165 (433)
Q Consensus 154 -----~~~~~~~~~~~~--------------------------------------------------------------- 165 (433)
....+..+...+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~ 309 (913)
T PRK13103 230 EDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTH 309 (913)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHH
Confidence 000000000000
Q ss_pred -----C------C-------------------------------------------------------------CCcEEE
Q 013962 166 -----P------D-------------------------------------------------------------KHQTLL 173 (433)
Q Consensus 166 -----~------~-------------------------------------------------------------~~~~i~ 173 (433)
. . ..++.+
T Consensus 310 i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsG 389 (913)
T PRK13103 310 VYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSG 389 (913)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhcc
Confidence 0 0 224567
Q ss_pred EEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccc
Q 013962 174 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 253 (433)
Q Consensus 174 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~ 253 (433)
||+|......++..-| .-..+.++...+..........+....++..+++..+.+.. ..+.|+||-+.|++
T Consensus 390 MTGTa~te~~Ef~~iY--~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~-------~~GrPVLVGT~SVe 460 (913)
T PRK13103 390 MTGTADTEAFEFRQIY--GLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECM-------ALGRPVLVGTATIE 460 (913)
T ss_pred CCCCCHHHHHHHHHHh--CCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEEeCCHH
Confidence 7777766555554444 33344444444444444455566677788888888777654 45677999999999
Q ss_pred cHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC------------------------
Q 013962 254 RCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM------------------------ 309 (433)
Q Consensus 254 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip------------------------ 309 (433)
..+.+++.|...+++..++++.....+-..+-+.-+.|. |.|||+++++|.||.
T Consensus 461 ~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 461 TSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPGA--LTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCCc--EEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 999999999999999999988766666666655555454 999999999999994
Q ss_pred -------------CCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccccccc
Q 013962 310 -------------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGNAVAF 372 (433)
Q Consensus 310 -------------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~ 372 (433)
+--+||-...+.|...-.|..||+||+|.+|.+-.|++..|..+. .++.+.+.........+.
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~~~~~~e~~~I 618 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQSGEAI 618 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHHHcCCCCCCcc
Confidence 223899999999999999999999999999999999998876542 233343332222223344
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCcccc
Q 013962 373 ATGKVARRKEREAAAAQKGATVATSK 398 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (433)
......+..+.++...+......+..
T Consensus 619 ~~~~i~~~i~~aQk~vE~~~~~~Rk~ 644 (913)
T PRK13103 619 EHRMVTNAIEKAQRKVEGRNFDIRKQ 644 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666665555444433333
No 103
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=2.8e-29 Score=214.17 Aligned_cols=191 Identities=52% Similarity=0.855 Sum_probs=168.2
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.... ...+++++|++|+++|+.|+...
T Consensus 12 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 12 RGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAPTRELALQIAEV 88 (203)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcCCHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999887742 12378899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+... .++.+..+.|+............+++|+|+||+.+.+.+......+.+++++|+||+|.+.+.++...+..+
T Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~ 167 (203)
T cd00268 89 ARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREI 167 (203)
T ss_pred HHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHH
Confidence 9998765 368888899998877766666668899999999999988887777888999999999999888888889999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEE
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 196 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 196 (433)
...++...+++++|||+++.....+..++.++..+
T Consensus 168 ~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 168 LKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99998899999999999999999898888877654
No 104
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3e-28 Score=233.41 Aligned_cols=364 Identities=16% Similarity=0.153 Sum_probs=252.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-+..-|..|.||-|||+++.+|++...+. |+.|-|++.+..|+..-++++..++..+ +
T Consensus 77 ~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL-G 147 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL-G 147 (925)
T ss_pred CCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh-C
Confidence 344444444444444556899999999999999999887776 8889999999999999999999999887 8
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cCC----------
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DMG---------- 153 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~~---------- 153 (433)
+++++...+.........+ .++|+++|...| +++++.+.. ..+.+.+.||||+|.++ +..
T Consensus 148 LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 9999998887776665554 489999999988 777776532 24668899999999643 100
Q ss_pred -----CHHHHHHHHhhCCC-------------------------------------------------------------
Q 013962 154 -----FEPQIREVMQNLPD------------------------------------------------------------- 167 (433)
Q Consensus 154 -----~~~~~~~~~~~~~~------------------------------------------------------------- 167 (433)
.......+...+..
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111112221110
Q ss_pred -------------------------------------------------------CCcEEEEEeecchHHHHHHHHhcCC
Q 013962 168 -------------------------------------------------------KHQTLLFSATMPVEIEALAQEYLTD 192 (433)
Q Consensus 168 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 192 (433)
..++.+||+|......++...| .
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY--~ 383 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY--N 383 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh--C
Confidence 2356688888766555555444 3
Q ss_pred CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeee
Q 013962 193 PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVAL 272 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 272 (433)
-..+.+++..+..........+....++..+++..+.+.. ..+.|+||.|.+++.++.+++.|.+.+++..++
T Consensus 384 l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~-------~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 384 MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVH-------KKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHH-------hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 3334444444333333333455566777777777766554 345779999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC--------cEEEEccCCCChhHHHhhcccCCCCCCceeEEE
Q 013962 273 HGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV--------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATS 344 (433)
Q Consensus 273 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~--------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 344 (433)
++.....+...+-+.-+.| .|.|||+++++|.|+.-- -+||....+.|...-.|..||+||+|.+|.+..
T Consensus 457 NAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 457 NAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred cccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 9875554544444333333 499999999999999522 289999999999999999999999999999999
Q ss_pred EeccccHHHH-----HHHHHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCCCcccccc
Q 013962 345 FYTDRDMLLV-----AQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLS 400 (433)
Q Consensus 345 ~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (433)
|++..|..+. +++...+..... .+.......+..+.++...+......+..+.
T Consensus 535 ~lSLeD~L~r~f~~~~ri~~~~~~l~~---~~i~~~~i~~~ie~AQkkvE~~nfdiRK~ll 592 (925)
T PRK12903 535 FISLDDQLFRRFSNFDKIKEAFKKLGD---DEIKSKFFSKALLNAQKKIEGFNFDTRKNVL 592 (925)
T ss_pred EEecchHHHHHhCCHHHHHHHHHhcCC---CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998886543 344444332221 1444555666666666665554444333333
No 105
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=2.3e-28 Score=227.00 Aligned_cols=321 Identities=16% Similarity=0.208 Sum_probs=224.7
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|++||.+.++.+. ++-+.|+...+|.|||+.. +.++.++... ++..+..||+||...|.+ |..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~----~~~~GPfLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR----KGIPGPFLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh----cCCCCCeEEEeeHhhHHH-HHHHHHHhC
Confidence 69999999999987 4568999999999999865 3444444432 112455799999877766 999999997
Q ss_pred ccCCCceEEEEECCCCHHHHH--HH-hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 87 RSLDSFKTAIVVGGTNIAEQR--SE-LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
+++.+.++.|+....... .. .....+|+|||++..+..-. ...--.+.++||||+|++.+. ...+..++.
T Consensus 241 ---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 241 ---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred ---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 578899999987432211 12 23478999999999865411 112234889999999999985 556667777
Q ss_pred hCCCCCcEEEEEeecchH--------------------------------------------------------------
Q 013962 164 NLPDKHQTLLFSATMPVE-------------------------------------------------------------- 181 (433)
Q Consensus 164 ~~~~~~~~i~~SAT~~~~-------------------------------------------------------------- 181 (433)
.+.... -+++|+||-.+
T Consensus 314 ~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 776444 58899998100
Q ss_pred --------------------------------------------HHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc
Q 013962 182 --------------------------------------------IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE 217 (433)
Q Consensus 182 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (433)
+.-.+...+..|+.+......++.....+. +..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL---v~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL---VTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH---Hhc
Confidence 000111112222222111110111111111 111
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCC---Cc
Q 013962 218 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS---TN 294 (433)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ 294 (433)
..|...+-.++.... ..++++|||.+......-+.+++.-.++..+.+.|.++-++|...++.|.... .-
T Consensus 470 SGKm~vLDkLL~~Lk-------~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~Fi 542 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLK-------EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFI 542 (971)
T ss_pred CcceehHHHHHHHHH-------hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEE
Confidence 222222222222211 45578999999999999999999999999999999999999999999998754 34
Q ss_pred EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHH
Q 013962 295 ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355 (433)
Q Consensus 295 vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~ 355 (433)
.|++|.+.+.|||+..+++||.||..|+|..-.|...||+|.|+...+.+|-...+....+
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 7889999999999999999999999999999999999999999998888887655544333
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=234.42 Aligned_cols=335 Identities=20% Similarity=0.247 Sum_probs=233.7
Q ss_pred ccCCCCCCcHHHHHHH--HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAM--PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i--~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
...|..+++.||.+|+ +.++.+++.+..+||+.|||+++.+.++...+.. +..++++.|..+.+..-...+
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHHhhh
Confidence 4678889999999998 6677889999999999999999999999888774 677999999999999888888
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc--CCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
..+...+ ++.+..+.|........ ..-.+.|+|.|+-..+... ..-.+..+++||+||.|.+.+.+.+..+..
T Consensus 290 ~~~~~~~-G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 290 SPFSIDL-GFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred hhhcccc-CCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH
Confidence 8887765 67777777665544322 2357999999876433322 123456689999999999999887766665
Q ss_pred HHhh-----CCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCC--CceEEEEEcCchhhHHHHHHHHHHHHH
Q 013962 161 VMQN-----LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA--NVIQILEKVSENEKVDRLLALLVEEAF 233 (433)
Q Consensus 161 ~~~~-----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (433)
++.. .....|+|+||||+++.. .+..++....+.......+-.. .+.......+ ...+...+.....
T Consensus 365 ~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~----r~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 365 LLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS----RNKVLREIANLYS 438 (1008)
T ss_pred HHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecccCcccchhccCCCcccccch----hhHHHHHhhhhhh
Confidence 5433 234467999999998652 2333433222211110000000 0111111111 1111111111000
Q ss_pred hhh-------------hcCCCCCeEEEEEeccccHHHHHHHHHHC-----------------------------------
Q 013962 234 LAE-------------KSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------- 265 (433)
Q Consensus 234 ~~~-------------~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------------- 265 (433)
... ..-..+.++||||+++..|+.++..+...
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 000 11123456999999999998887665321
Q ss_pred ---CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc----CCCChhHHHhhcccCCCCCC
Q 013962 266 ---GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD----LPKTVEDYVHRIGRTGRGGS 338 (433)
Q Consensus 266 ---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~----~~~s~~~~~Q~~GR~~R~g~ 338 (433)
...+..+|++++.++|..+...|++|.+.|++||++++.|+|+|..+++|..- ...+...|.||+|||||.|-
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 23478899999999999999999999999999999999999999888888642 23478899999999999975
Q ss_pred --ceeEEEEeccccHHHHHHH
Q 013962 339 --MGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 339 --~g~~~~~~~~~d~~~~~~~ 357 (433)
.|.+++++...|...+..+
T Consensus 599 dT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred ccCcceEEEeeccchhHHHHH
Confidence 5889999999887655443
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.3e-27 Score=229.99 Aligned_cols=318 Identities=22% Similarity=0.258 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~----~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
..+.+-|+.|++.+.+. ...++.+.||||||.+|+-.+...+.+ |+++|+++|-.+|..|+.++|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 46889999999999865 569999999999999998777776655 899999999999999999999998
Q ss_pred hccCCCceEEEEECCCC----HHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-----CHH
Q 013962 86 SRSLDSFKTAIVVGGTN----IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEP 156 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-----~~~ 156 (433)
+. .++.+++.+.+ ...|.+...+..+|+|+|...++ ..+.++++||+||-|.-.-.. |..
T Consensus 269 Fg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 269 FG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCH
Confidence 74 55666666554 44555566788999999988876 567889999999999754221 333
Q ss_pred HHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCC--CCCceEEEEEcCchhh----HHHHHHHHHH
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP--TANVIQILEKVSENEK----VDRLLALLVE 230 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~ 230 (433)
.-..++..-..++++|+-||||.-+.......- ....+........ .+.+.-.......... ...++..+.+
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 333444444467889999999986655544222 2222322222221 2222211111111111 1344444443
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccH-------------------------------------------------------
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRC------------------------------------------------------- 255 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~------------------------------------------------------- 255 (433)
.. ..+.++|+|.|.+-.+
T Consensus 416 ~l-------~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 416 TL-------ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HH-------hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 33 3445689998886543
Q ss_pred -----HHHHHHHHHC--CCceeeecCCCCHH--HHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC-----
Q 013962 256 -----DEVSEALVAE--GLHAVALHGGRNQS--DRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK----- 321 (433)
Q Consensus 256 -----~~l~~~L~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~----- 321 (433)
+++.+.|... +.++..+.++.+.. .-...+..|.+|+.+|||.|++++.|.|+|++..|...+...
T Consensus 489 ~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~ 568 (730)
T COG1198 489 VGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSP 568 (730)
T ss_pred ecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCC
Confidence 7777777765 56677777766543 356789999999999999999999999999999888765542
Q ss_pred -------ChhHHHhhcccCCCCCCceeEEEEeccccHHHHH
Q 013962 322 -------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVA 355 (433)
Q Consensus 322 -------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~ 355 (433)
....+.|-.||+||.+.+|.+++.....|...+.
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~ 609 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQ 609 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHH
Confidence 3455789999999998999999888766644433
No 108
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.96 E-value=3.7e-27 Score=227.32 Aligned_cols=359 Identities=17% Similarity=0.166 Sum_probs=246.3
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-++.-++.+.||.|||+++.+|++...+. |..|.|++++..|+.+.++++..++..+ +
T Consensus 75 ~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~L-G 145 (870)
T CHL00122 75 LRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFL-G 145 (870)
T ss_pred CCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHc-C
Confidence 344444445555556778999999999999999999776665 8889999999999999999999999987 7
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cCC----------
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DMG---------- 153 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~~---------- 153 (433)
++++++.++.+..+....+ .++|+++|...| +++++.+.. ..+.+.++||||+|.++ +..
T Consensus 146 Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 9999998888877665554 479999999887 666665532 24568999999999632 100
Q ss_pred -----CHHHHHHHHhhCCC-------------------------------------------------------------
Q 013962 154 -----FEPQIREVMQNLPD------------------------------------------------------------- 167 (433)
Q Consensus 154 -----~~~~~~~~~~~~~~------------------------------------------------------------- 167 (433)
.......+...+..
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 00000111111100
Q ss_pred -------------------------------------------------------CCcEEEEEeecchHHHHHHHHhcCC
Q 013962 168 -------------------------------------------------------KHQTLLFSATMPVEIEALAQEYLTD 192 (433)
Q Consensus 168 -------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 192 (433)
..++.+||+|......++...| +
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY--~ 381 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIY--N 381 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHh--C
Confidence 2356788888876555554444 3
Q ss_pred CeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeee
Q 013962 193 PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVAL 272 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 272 (433)
-..+.++...+..........+....++..+++..+.+.. ..+.|+||-|.|++..+.+++.|...++++.++
T Consensus 382 l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~-------~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vL 454 (870)
T CHL00122 382 LEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMH-------QTGRPILIGTTTIEKSELLSQLLKEYRLPHQLL 454 (870)
T ss_pred CCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHH-------hcCCCEEEeeCCHHHHHHHHHHHHHcCCcccee
Confidence 3344455444444444444555666677777777665543 455779999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHhcCCCcEEEEecccccCcccC---C-------------------------------------
Q 013962 273 HGGR--NQSDRESALRDFRNGSTNILVATDVASRGLDVM---G------------------------------------- 310 (433)
Q Consensus 273 ~~~~--~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---~------------------------------------- 310 (433)
++.. ...+...+-+.-+.|. |.|||+++++|.||. +
T Consensus 455 NAk~~~~~~EA~IIA~AG~~G~--VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (870)
T CHL00122 455 NAKPENVRRESEIVAQAGRKGS--ITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLK 532 (870)
T ss_pred eCCCccchhHHHHHHhcCCCCc--EEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccccccchhhhhhcc
Confidence 9863 2455555555544444 999999999999982 1
Q ss_pred ------------------------------------------------------------CcEEEEccCCCChhHHHhhc
Q 013962 311 ------------------------------------------------------------VAHVVNLDLPKTVEDYVHRI 330 (433)
Q Consensus 311 ------------------------------------------------------------~~~Vi~~~~~~s~~~~~Q~~ 330 (433)
--+||-.....|..--.|.+
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLr 612 (870)
T CHL00122 533 NDLKFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLR 612 (870)
T ss_pred cchhhhcccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHh
Confidence 01566667777888889999
Q ss_pred ccCCCCCCceeEEEEeccccHHHHH----HHHHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCC
Q 013962 331 GRTGRGGSMGQATSFYTDRDMLLVA----QIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGAT 393 (433)
Q Consensus 331 GR~~R~g~~g~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (433)
||+||+|.+|.+-.+++-.|..+.. .+.+.+..... ...+.......+..+.++...+....
T Consensus 613 GRaGRQGDPG~s~f~lSLED~l~~~f~~~~~~~~~~~~~~-~~~~i~~~~~~~~i~~aQ~~vE~~~~ 678 (870)
T CHL00122 613 GRAGRQGDPGSSRFFLSLEDNLLRIFGGDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQKKVEEYYY 678 (870)
T ss_pred ccccCCCCCCcceEEEEeccHHHHhhChHHHHHHHHHhCC-CCcccccHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999988876532 23333222111 22233344445555555554444433
No 109
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-26 Score=221.08 Aligned_cols=371 Identities=17% Similarity=0.169 Sum_probs=260.0
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.++||-.+.+..+.-++.-|+.|.||.|||+++.+|++...+. |+.|.|++++..|+.+.++++..++..+
T Consensus 83 G~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred CCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 4566666667667667778999999999999999999988777 8889999999999999999999999887
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cCC---------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DMG--------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~~--------- 153 (433)
++.++++.++....+.... ..++|+++|...| +++++.+.. ..+.+.++||||+|.++ +..
T Consensus 154 GLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 8999999888777665544 4689999999988 666654422 34668999999999643 100
Q ss_pred ------CHHHHHHHHhhCCC------------------------------------------------------------
Q 013962 154 ------FEPQIREVMQNLPD------------------------------------------------------------ 167 (433)
Q Consensus 154 ------~~~~~~~~~~~~~~------------------------------------------------------------ 167 (433)
.......+...+..
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 00001111110000
Q ss_pred --------------------------------------------------------------CCcEEEEEeecchHHHHH
Q 013962 168 --------------------------------------------------------------KHQTLLFSATMPVEIEAL 185 (433)
Q Consensus 168 --------------------------------------------------------------~~~~i~~SAT~~~~~~~~ 185 (433)
..++.+||+|......++
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 235668888876555555
Q ss_pred HHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC
Q 013962 186 AQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 265 (433)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 265 (433)
..-| .-..+.++...+..........+....++..+++..+.+.. ..+.|+||-+.|++..+.+++.|.+.
T Consensus 392 ~~iY--~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~-------~~GrPVLIgT~SVe~SE~ls~~L~~~ 462 (939)
T PRK12902 392 EKTY--KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMH-------KQGRPVLVGTTSVEKSELLSALLQEQ 462 (939)
T ss_pred HHHh--CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEeeCCHHHHHHHHHHHHHc
Confidence 4444 33344455545444444455556666778788777776653 44677999999999999999999999
Q ss_pred CCceeeecCC-CC-HHHHHHHHHHHhcCCCcEEEEecccccCcccCCC--------------------------------
Q 013962 266 GLHAVALHGG-RN-QSDRESALRDFRNGSTNILVATDVASRGLDVMGV-------------------------------- 311 (433)
Q Consensus 266 ~~~~~~~~~~-~~-~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~-------------------------------- 311 (433)
++++.++++. .. ..+...+.+.-+.|. |.|||+++++|.||.=-
T Consensus 463 gi~h~vLNAk~~~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (939)
T PRK12902 463 GIPHNLLNAKPENVEREAEIVAQAGRKGA--VTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPPVPL 540 (939)
T ss_pred CCchheeeCCCcchHhHHHHHHhcCCCCc--EEEeccCCCCCcCEeeCCchhhhhhHHhhhhcccccccccccccccccc
Confidence 9999999986 22 445555555555454 99999999999998310
Q ss_pred --------------------------------------------------------------------------------
Q 013962 312 -------------------------------------------------------------------------------- 311 (433)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (433)
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (939)
T PRK12902 541 QRGLKGGQGFGPKAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVI 620 (939)
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhh
Confidence
Q ss_pred ------------------------------cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHH
Q 013962 312 ------------------------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQI 357 (433)
Q Consensus 312 ------------------------------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~ 357 (433)
-+||-.....|...-.|.+||+||+|.+|.+.+|++-.|..+. +++
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg~dri 700 (939)
T PRK12902 621 QKLREAYNRIKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDRV 700 (939)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhCcHHH
Confidence 0233334445666778999999999999999999998886542 245
Q ss_pred HHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCCCccccccccC
Q 013962 358 KKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMG 403 (433)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 403 (433)
.+.+.........+.......+..+.++...+......+..+..+.
T Consensus 701 ~~~~~~l~~~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD 746 (939)
T PRK12902 701 AGLMNAFRVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYD 746 (939)
T ss_pred HHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHH
Confidence 5554444444445666777777778887777666555554444443
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=4.3e-26 Score=222.72 Aligned_cols=383 Identities=18% Similarity=0.242 Sum_probs=251.3
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 92 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 92 (433)
+....+.+.++.+++.++|.++||||||...-..+++... ..++.+.+.-|++--+...+.++......-.+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 4456677788888899999999999999754333333322 236788999999988888888887776554455
Q ss_pred eEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc-cCCC-HHHHHHHHhhCCCCCc
Q 013962 93 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGF-EPQIREVMQNLPDKHQ 170 (433)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~-~~~~-~~~~~~~~~~~~~~~~ 170 (433)
.|+.-....+ ....+++|-++|.+.|...+.... .++.+++||+||+|.=. +.++ -..+..++...++..+
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 5555443332 233567999999999999888643 47889999999999522 2222 2234555666676789
Q ss_pred EEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhh-HHHHHHHHHHHHHhhhhcCCCCCeEEEEE
Q 013962 171 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK-VDRLLALLVEEAFLAEKSCHPFPLTIVFV 249 (433)
Q Consensus 171 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lvf~ 249 (433)
+|.||||+.. +....++.+...+.+..... .+...|......+. ...-+........ . ...+.+|||.
T Consensus 198 iIimSATld~---~rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~---~--~~~GdILvFL 266 (845)
T COG1643 198 LIIMSATLDA---ERFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHL---R--EGSGSILVFL 266 (845)
T ss_pred EEEEecccCH---HHHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhc---c--CCCCCEEEEC
Confidence 9999999973 34556666544444332221 22222212222222 2222222222211 1 2246699999
Q ss_pred eccccHHHHHHHHHH----CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC----
Q 013962 250 ERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---- 321 (433)
Q Consensus 250 ~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~---- 321 (433)
+...+.+.+++.|.+ ....+..+||.++.++...+++--..|..+|++||+++++++.+|+++.||..+..+
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999998 357789999999999999987776667667999999999999999999999876543
Q ss_pred --------------ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHH-----H-----HHHhhh-----h-ccccccc
Q 013962 322 --------------TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ-----I-----KKAIVD-----A-ESGNAVA 371 (433)
Q Consensus 322 --------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~-----~-----~~~~~~-----~-~~~~~~~ 371 (433)
|-++..||.|||||.+ +|.|+-+|+..+...... | ...... . .+...++
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~ 425 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFP 425 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCc
Confidence 7788899999999995 599999999866542211 1 111000 0 1223334
Q ss_pred chhhhHHHHHHHHH-HHHhcCCCCccccccccCC---CCchHHHHHHHHHhccc
Q 013962 372 FATGKVARRKEREA-AAAQKGATVATSKLSMMGP---SVNIEDKYRFMIAASNM 421 (433)
Q Consensus 372 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~ 421 (433)
|....-......+. .....++-.....+...|+ .+.+..+...|+.....
T Consensus 426 fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 426 FLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred cCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccc
Confidence 44433333333332 2333444333344566666 66777777777776653
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=5.3e-27 Score=194.29 Aligned_cols=164 Identities=31% Similarity=0.571 Sum_probs=139.3
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 92 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 92 (433)
||+|.++++.+.+++++++.+|||+|||++++.+++..+.+.. ..++++++|+++|+.|.++.+..++.. .+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~------~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK------DARVLIIVPTRALAEQQFERLRKFFSN-TNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS------SSEEEEEESSHHHHHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC------CceEEEEeecccccccccccccccccc-ccc
Confidence 6899999999999999999999999999999999998877631 458999999999999999999999876 468
Q ss_pred eEEEEECCCCHH-HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC--CC
Q 013962 93 KTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD--KH 169 (433)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~--~~ 169 (433)
.+..++++.... .....+..+++|+|+||+.|.+.+......+.++++||+||+|.+..+.+...+..++..+.. +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 888888888755 444445567999999999999999876556677999999999999987778888888877733 58
Q ss_pred cEEEEEeecchHHH
Q 013962 170 QTLLFSATMPVEIE 183 (433)
Q Consensus 170 ~~i~~SAT~~~~~~ 183 (433)
+++++|||++..++
T Consensus 154 ~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 154 QIILLSATLPSNVE 167 (169)
T ss_dssp EEEEEESSSTHHHH
T ss_pred cEEEEeeCCChhHh
Confidence 89999999985544
No 112
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=1.4e-26 Score=218.63 Aligned_cols=305 Identities=19% Similarity=0.198 Sum_probs=199.0
Q ss_pred CCCCCCcHHHHHHHHHhh----cC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPVAL----SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~----~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+.-..+|.||..|+..+. .| +.+|++|+||+|||.+++. ++..+.+.. .-+++|+|+.+.+|++|.+..
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG-----WVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc-----hhheeeEEechHHHHHHHHHH
Confidence 345579999999998876 33 4599999999999999855 444444432 378999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-----CCCCCCccEEEEcccchhccCCCHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-----~~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
+..+......++...-..+. +.++|.++|++++....... .+....|++|||||||+-. ..
T Consensus 235 f~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 99887543322222222111 24799999999998777654 2334559999999999864 33
Q ss_pred HHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhc-CCCeEEEecCc-----CCCCCCceEEE------------------
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL-TDPVQVKVGKV-----SSPTANVIQIL------------------ 212 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~------------------ 212 (433)
.+..++..+.. ..+++||||........-.++ +.|.....-.. .-.+.++....
T Consensus 301 ~~~~I~dYFdA--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek 378 (875)
T COG4096 301 EWSSILDYFDA--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREK 378 (875)
T ss_pred hhHHHHHHHHH--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhh
Confidence 44466655532 235569999775555444555 33332210000 00000000000
Q ss_pred -------------EEcC------chhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-----CCc
Q 013962 213 -------------EKVS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----GLH 268 (433)
Q Consensus 213 -------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~ 268 (433)
...+ .......+...+.+..... ......+++||||.+..+|+.+.+.|.+. +--
T Consensus 379 ~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~-~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 379 LQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG-ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhccccCcccccccccccchhccccchHHHHHHHHHHHhccc-cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 0000 0011122222222222221 12222578999999999999999999875 334
Q ss_pred eeeecCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCC
Q 013962 269 AVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 336 (433)
Q Consensus 269 ~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 336 (433)
+..+.++ .++-+..++.|.. --.+|.|+.+++.+|+|+|.|.+++++....|..-|.||+||+-|.
T Consensus 458 a~~IT~d--~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 458 AMKITGD--AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEEecc--chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 5566664 3444555666655 3457888889999999999999999999999999999999999995
No 113
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.4e-25 Score=207.01 Aligned_cols=311 Identities=19% Similarity=0.232 Sum_probs=216.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE
Q 013962 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 94 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 94 (433)
+-.+.+..+.+++-++|.|+||||||...-..+.+.-... .+.+.+.-|++.-+...+++...-.+..-+-.+
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~-------~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-------SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc-------CCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 3456677777888899999999999975443333332222 344899999998888888777765544334455
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CC-CHHHHHHHHhhCCCCCcEE
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MG-FEPQIREVMQNLPDKHQTL 172 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~-~~~~~~~~~~~~~~~~~~i 172 (433)
+....-.+. ....++|.++|.+.|++..... ..++.+++||+||||.=.- .+ ....++++++.. +..++|
T Consensus 128 GY~IRFed~------ts~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklI 199 (674)
T KOG0922|consen 128 GYTIRFEDS------TSKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLI 199 (674)
T ss_pred eeEEEeccc------CCCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEE
Confidence 443322221 1235799999999999887754 4578899999999995221 11 122334444333 457899
Q ss_pred EEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecc
Q 013962 173 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK 252 (433)
Q Consensus 173 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~ 252 (433)
.||||+. .+....|+.....+.+.... ..+...+...+..+.++..+..+.+.... .+.+=+|||....
T Consensus 200 imSATld---a~kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvFLtGq 268 (674)
T KOG0922|consen 200 IMSATLD---AEKFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLT-----EPPGDILVFLTGQ 268 (674)
T ss_pred EEeeeec---HHHHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHcc-----CCCCCEEEEeCCH
Confidence 9999997 34455666664444333222 22333444444455555555555444322 2223499999999
Q ss_pred ccHHHHHHHHHHC----C--C--ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC----
Q 013962 253 TRCDEVSEALVAE----G--L--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP---- 320 (433)
Q Consensus 253 ~~~~~l~~~L~~~----~--~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~---- 320 (433)
++++.+++.|.+. . . -+..+||.++.+++..+.+.-..|..+|+++|+++++.+.+|++..||+.+..
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999775 1 1 24678999999999999888788999999999999999999999999976653
Q ss_pred --------------CChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 321 --------------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 321 --------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
-|-.+-.||.|||||.| +|.|+-+|+..+..
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 37888999999999996 49999999988764
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=4e-25 Score=217.64 Aligned_cols=303 Identities=19% Similarity=0.185 Sum_probs=183.0
Q ss_pred CcHHHHHHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALS----------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~----------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++++|..|+..+.. .+..++.++||||||++++..+...+ .. ...+++|||||+..|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 78999999988752 24699999999999998765554433 22 1368899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCC--CCCCCc-cEEEEcccchhccCCCHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRV-SFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~--~~~~~~-~~vIiDE~h~~~~~~~~~~ 157 (433)
+..+... ...+..+.......+. ....|+|+|.++|...+.... ...... .+||+||||+.... .
T Consensus 313 f~~~~~~-------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~ 381 (667)
T TIGR00348 313 FQSLQKD-------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----E 381 (667)
T ss_pred HHhhCCC-------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----H
Confidence 9987521 0112223333333333 346899999999976443211 111112 38999999986532 2
Q ss_pred HHHHH-hhCCCCCcEEEEEeecchHHHHHHHHhcC----CCeEEEecCcCCCCCC-ceEE-EEEcC-----chhhH----
Q 013962 158 IREVM-QNLPDKHQTLLFSATMPVEIEALAQEYLT----DPVQVKVGKVSSPTAN-VIQI-LEKVS-----ENEKV---- 221 (433)
Q Consensus 158 ~~~~~-~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~-~~~~~-----~~~~~---- 221 (433)
+...+ ..++ +...++|||||...........+. .+.. ........... .... +.... ..++.
T Consensus 382 ~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~ 459 (667)
T TIGR00348 382 LAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFF 459 (667)
T ss_pred HHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHH
Confidence 33333 4454 567999999996421111111111 1111 11100000000 0000 00000 00000
Q ss_pred ------------------------------------HHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC
Q 013962 222 ------------------------------------DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 265 (433)
Q Consensus 222 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 265 (433)
..+...+.+..... ......+++|||.++.+|..+.+.|.+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~--~~~~~~kamvv~~sr~~a~~~~~~l~~~ 537 (667)
T TIGR00348 460 DEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKF--KELFKFKAMVVAISRYACVEEKNALDEE 537 (667)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHh--hhcccCceeEEEecHHHHHHHHHHHHhh
Confidence 01111111111110 1122477999999999999999888664
Q ss_pred -----CCceeeecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 266 -----GLHAVALHGGRNQS---------------------DRESALRDFRN-GSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 266 -----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
+.....+++..+.. ....++++|++ +.+++||+++++.+|+|.|.+.+++...
T Consensus 538 ~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK 617 (667)
T TIGR00348 538 LNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK 617 (667)
T ss_pred cccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec
Confidence 23445555543322 22468889976 6889999999999999999999999998
Q ss_pred CCCChhHHHhhcccCCCC
Q 013962 319 LPKTVEDYVHRIGRTGRG 336 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~ 336 (433)
+..+. .++|++||+.|.
T Consensus 618 plk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 618 PLKYH-GLLQAIARTNRI 634 (667)
T ss_pred ccccc-HHHHHHHHhccc
Confidence 87765 589999999994
No 115
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.1e-25 Score=215.79 Aligned_cols=370 Identities=17% Similarity=0.189 Sum_probs=260.2
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++||-.+.+..+.-++.-|..|.||-|||+++.+|+....+. |+.|-||+.+..|+..-++++..++..+ +
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fL-G 238 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFH-G 238 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHh-C
Confidence 778888888888888888999999999999999999998887 7889999999999999999999999887 7
Q ss_pred ceEEEEEC-CCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc-c----------C
Q 013962 92 FKTAIVVG-GTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML-D----------M 152 (433)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~----------~ 152 (433)
+.++++.. +.+....... ..++|+++|...| +++++.+.. ..+.+.+.||||+|.++ + .
T Consensus 239 Lsvg~i~~~~~~~~~rr~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILIDEARTPLIISGp 316 (1112)
T PRK12901 239 LSVDCIDKHQPNSEARRKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGP 316 (1112)
T ss_pred CceeecCCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhccccCcEEEeCC
Confidence 99998866 4455554443 4589999999888 777766532 23568999999999642 1 0
Q ss_pred ---CCHHH-------HHHH--------------------------------------------HhhCCC-----------
Q 013962 153 ---GFEPQ-------IREV--------------------------------------------MQNLPD----------- 167 (433)
Q Consensus 153 ---~~~~~-------~~~~--------------------------------------------~~~~~~----------- 167 (433)
..... +..+ +..+..
T Consensus 317 ~~~~~~~~y~~~~~~V~~Lv~~Q~~~~~~~~~~a~~~i~~~~~~eg~~~l~r~~~g~Pknk~li~~L~e~~~~~~~~k~e 396 (1112)
T PRK12901 317 VPKGDDQEFEELKPRVERLVEAQRKLATQFLAEAKKLIAEGDKKEGGLALLRAYRGLPKNKALIKFLSEEGIKALLQKTE 396 (1112)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhhhhccccchhHHHHHhhhhhhhhhhhhhh
Confidence 00000 0000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 168 -------------------------------------------------------------------------------- 167 (433)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (433)
T Consensus 397 ~~~~~~n~~~~~~~~~~~dy~iDek~~~v~LTe~G~~~~e~~~~~~~~fv~pdi~~~~~~I~~ly~l~~~ek~~~k~~~~ 476 (1112)
T PRK12901 397 NFYMQDNNREMPEVDEELYFVIDEKNNSVELTDKGIDYITGNDEDPDFFVLPDIGTELAEIENEGGLDEEEEAEKKEELF 476 (1112)
T ss_pred hhhhhhhhhcccccCCCCceEEecCCCceeecHHHHHHHhcccCchhhhhccchhhhhhcchhhcccchhhhhhhhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 013962 168 -------------------------------------------------------------------------------- 167 (433)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (433)
T Consensus 477 ~~~~~~~~~~h~i~qaLkA~~lf~kDvdYiV~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~ 556 (1112)
T PRK12901 477 QDYSVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITL 556 (1112)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeH
Confidence
Q ss_pred ------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 168 ------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 168 ------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
..++-+||+|......++..-| .-..+.++...+..........+....+|..+++..+.+.. ..
T Consensus 557 QnyFR~Y~kLsGMTGTA~tea~Ef~~IY--~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~-------~~ 627 (1112)
T PRK12901 557 QNYFRMYHKLAGMTGTAETEAGEFWDIY--KLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELS-------EA 627 (1112)
T ss_pred HHHHhhCchhcccCCCCHHHHHHHHHHh--CCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHH-------HC
Confidence 1123344444443333333333 22233333333333333444455666778888877777654 45
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC--------CCcE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM--------GVAH 313 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip--------~~~~ 313 (433)
+.|+||-+.|++..+.+++.|...+++..++++.....+...+-+.-+.|. |.|||+++++|.||. +--+
T Consensus 628 GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~ 705 (1112)
T PRK12901 628 GRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGT--VTIATNMAGRGTDIKLSPEVKAAGGLA 705 (1112)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCc--EEEeccCcCCCcCcccchhhHHcCCCE
Confidence 677999999999999999999999999999998777667766766666666 999999999999995 3348
Q ss_pred EEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccccccchhhhHHHHHHHHHHHHh
Q 013962 314 VVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQ 389 (433)
Q Consensus 314 Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (433)
||-...+.|...-.|..||+||+|.+|.+-.|++..|..+. +++...+.........+.......+..++++...+
T Consensus 706 VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g~~ege~I~~~~i~ksIe~AQkkvE 785 (1112)
T PRK12901 706 IIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVE 785 (1112)
T ss_pred EEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998886542 23333333333223344555566777777777766
Q ss_pred cCCCCccccccccC
Q 013962 390 KGATVATSKLSMMG 403 (433)
Q Consensus 390 ~~~~~~~~~~~~~g 403 (433)
......+..+..+.
T Consensus 786 ~~nf~iRK~lleYD 799 (1112)
T PRK12901 786 ENNFGIRKRLLEYD 799 (1112)
T ss_pred HHHHHHHHHHHHHH
Confidence 65554444444433
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.2e-24 Score=207.16 Aligned_cols=280 Identities=23% Similarity=0.357 Sum_probs=195.0
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
|+ .|+..|+--...+..|+++-+.||||.|||.. .+.+..++.. +|+++++|+||..|+.|.++.+.++..
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 44 89999999999999999999999999999954 3333333332 289999999999999999999999987
Q ss_pred cCCCceEEE-EECCCCHHHHH----HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC---------
Q 013962 88 SLDSFKTAI-VVGGTNIAEQR----SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--------- 153 (433)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--------- 153 (433)
...+..+.. +++.....+.. +..+++.+|+|+|.+.|...+..-.. -+|++|++|++|.++..+
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHHH
Confidence 665455544 34443333222 23346899999999988766554221 459999999999765332
Q ss_pred --CHHH-----------------------HHHHHhh--------CCCCCcEEEEEeecchHH-H-HHHHHhcCCCeEEEe
Q 013962 154 --FEPQ-----------------------IREVMQN--------LPDKHQTLLFSATMPVEI-E-ALAQEYLTDPVQVKV 198 (433)
Q Consensus 154 --~~~~-----------------------~~~~~~~--------~~~~~~~i~~SAT~~~~~-~-~~~~~~~~~~~~~~~ 198 (433)
+... +.+.... -.+..+++..|||..+.- . ......++ +..
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----Fev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----Ccc
Confidence 1110 0111110 112357899999986543 1 22233322 233
Q ss_pred cCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEec---cccHHHHHHHHHHCCCceeeecCC
Q 013962 199 GKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER---KTRCDEVSEALVAEGLHAVALHGG 275 (433)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~---~~~~~~l~~~L~~~~~~~~~~~~~ 275 (433)
+.......++...+... +......+.+.+.. .-.|||++. ++.++.+++.|+.+|+++..+|+.
T Consensus 305 G~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG----------~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES---ESLEKVVELVKKLG----------DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred CccchhhhheeeeeccC---ccHHHHHHHHHHhC----------CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 34444455666665544 33333333333321 128999999 999999999999999999999983
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEe----cccccCcccCC-CcEEEEccCC
Q 013962 276 RNQSDRESALRDFRNGSTNILVAT----DVASRGLDVMG-VAHVVNLDLP 320 (433)
Q Consensus 276 ~~~~~r~~~~~~f~~g~~~vlv~T----~~~~~Gidip~-~~~Vi~~~~~ 320 (433)
....++.|..|++++||++ .++-+|+|+|. ++.+|+++.|
T Consensus 372 -----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 -----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred -----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 2678999999999999987 57899999996 7889999988
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2.9e-25 Score=220.90 Aligned_cols=324 Identities=20% Similarity=0.222 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHhhcC---C-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVALSG---R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~---~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
..+++|..++..+... . .+++.||||+|||.+++.+++..+... .....+++++.|++++.+++++.++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3488999999988843 4 688999999999999888877776552 1147889999999999999999999877
Q ss_pred ccCCCceEEEEECCCCHHHHHHH-----h---------hCCCcEEEeccHHHHHHHHcCCCCCC-----CccEEEEcccc
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSE-----L---------RGGVSIVVATPGRFLDHLQQGNTSLS-----RVSFVILDEAD 147 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~Ivv~T~~~l~~~~~~~~~~~~-----~~~~vIiDE~h 147 (433)
......... ..+.....-.... . ..-..+.++|+......... ...+. ..+++|+||+|
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK-GFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc-ccchHHHHHHHhhchhhccHH
Confidence 543211110 1222211100000 0 00112333333333221111 11111 14689999999
Q ss_pred hhccCCCHHHHHHHHhhC-CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCC-ceEEEE-EcCchhhHHHH
Q 013962 148 RMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN-VIQILE-KVSENEKVDRL 224 (433)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 224 (433)
.+.+......+..++..+ ..+..+|+||||+|+.....+....................+ ...... .........
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-- 426 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-- 426 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh--
Confidence 877663233333333322 346779999999999999988888766554443321100000 000000 000000000
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHh----cCCCcEEEEec
Q 013962 225 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR----NGSTNILVATD 300 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~ 300 (433)
.............+.+++|.|||+..|.++.+.|+..+.++..+||.+...+|.+.++.+. .+...|+|||+
T Consensus 427 ----~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 427 ----EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred ----HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 0111111122245677999999999999999999998878999999999999998887544 46788999999
Q ss_pred ccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCC--CceeEEEEeccc
Q 013962 301 VASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG--SMGQATSFYTDR 349 (433)
Q Consensus 301 ~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 349 (433)
+++.|+|+. .+.+|-=-.| ..+.+||+||++|.| ..|..+++....
T Consensus 503 VIEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 503 VIEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 999999994 7777755444 789999999999999 556666665443
No 118
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.7e-24 Score=202.41 Aligned_cols=315 Identities=17% Similarity=0.184 Sum_probs=212.8
Q ss_pred CCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
+..|.+||++++..+. ++...|+...+|.|||... +..+..+..... --+.+||||| ..+..||..++..
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k----~~~paLIVCP-~Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK----LTKPALIVCP-ATIIHQWMKEFQT 276 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc----ccCceEEEcc-HHHHHHHHHHHHH
Confidence 4568999999999987 4456899999999999764 334444444311 1367999999 6889999999999
Q ss_pred HhccCCCceEEEEECCCCH--------HHHHH-----HhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 85 LSRSLDSFKTAIVVGGTNI--------AEQRS-----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
|+ +.+.+.++++.... ...+. .......|+++|++.|.-. .....-..++++|+||.|++-+
T Consensus 277 w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 277 WW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred hC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccC
Confidence 87 46778887776552 11111 1224567999999887422 1112234589999999999987
Q ss_pred CCCHHHHHHHHhhCCCCCcEEEEEeecch-HHHHHHH-------------------------------------------
Q 013962 152 MGFEPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQ------------------------------------------- 187 (433)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~------------------------------------------- 187 (433)
. ...+...+..++.. +-|.+|+||-. ++.++..
T Consensus 352 p--ns~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 352 P--NSKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred C--ccHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 5 34555556666544 45778888811 1111000
Q ss_pred ---------H-------------------------------------h--------------------------cCCCeE
Q 013962 188 ---------E-------------------------------------Y--------------------------LTDPVQ 195 (433)
Q Consensus 188 ---------~-------------------------------------~--------------------------~~~~~~ 195 (433)
. | +..|..
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 0 0 000000
Q ss_pred EEecCcCCCCCCceEEE-EEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHH-HCCCceeeec
Q 013962 196 VKVGKVSSPTANVIQIL-EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-AEGLHAVALH 273 (433)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~-~~~~~~~~~~ 273 (433)
+......... ...+ .......+...+..++.... ..+.++|+|..++.....+...|. ..++.+..+.
T Consensus 509 l~~~~~~~~~---~~D~~g~~k~sGKm~vl~~ll~~W~-------kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmD 578 (923)
T KOG0387|consen 509 LDRRDEDEKQ---GPDYEGDPKRSGKMKVLAKLLKDWK-------KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMD 578 (923)
T ss_pred ccCccccccc---CCCcCCChhhcchHHHHHHHHHHHh-------hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEec
Confidence 0000000000 0000 00111123333333333322 344679999999999999999998 5899999999
Q ss_pred CCCCHHHHHHHHHHHhcCCC-c-EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 274 GGRNQSDRESALRDFRNGST-N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 274 ~~~~~~~r~~~~~~f~~g~~-~-vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
|.++...|..++++|++++. . .|++|.+.+-|+|+.+++-||+|||.|+|..-.|..-||-|.|++..+++|-.
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 99999999999999998754 3 56688999999999999999999999999999999999999999888777753
No 119
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=196.72 Aligned_cols=314 Identities=18% Similarity=0.225 Sum_probs=218.0
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
.++|-.+.+.++..++-++|.|.||||||...-..+.+.-+.. .|+.+-+..|++.-+..++.++..-..-.-+
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk------~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK------GGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc------CCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 4677788899999999999999999999975333232222221 2556888899998888887766654321112
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc-cCC-CHHHHHHHHhhCCCCC
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMG-FEPQIREVMQNLPDKH 169 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~-~~~-~~~~~~~~~~~~~~~~ 169 (433)
-.++.-..-.+ ....++.|-++|.++|+..+.. ...+.++++|||||||.=. ..+ ....+..| ..+.+..
T Consensus 340 ~eVGYsIRFEd------cTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDI-ar~RpdL 411 (902)
T KOG0923|consen 340 HEVGYSIRFED------CTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPDL 411 (902)
T ss_pred cccceEEEecc------ccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCcc
Confidence 22322221111 1123467889999999887765 4567889999999999522 111 11122222 3445788
Q ss_pred cEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEE
Q 013962 170 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 249 (433)
Q Consensus 170 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~ 249 (433)
+++.+|||+.. .....|+.+...+..+... -.+...+...+..+.+++.+..+.+.... .+.+-+|||.
T Consensus 412 KllIsSAT~DA---ekFS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~t-----qp~GDILVFl 480 (902)
T KOG0923|consen 412 KLLISSATMDA---EKFSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLT-----QPLGDILVFL 480 (902)
T ss_pred eEEeeccccCH---HHHHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEec-----cCCccEEEEe
Confidence 89999999973 3455677665554443322 22334444455556666666655543322 4445699999
Q ss_pred eccccHHHHHHHHHHC---------CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 250 ERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 250 ~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
...++.+...+.|... .+-+..+|+.+|.+.+..+++---.|..+|++||+++++.+.|+++..||.-++.
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~ 560 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFV 560 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccc
Confidence 9999988887777653 3457889999999999999887778889999999999999999999999976654
Q ss_pred ------------------CChhHHHhhcccCCCCCCceeEEEEeccccH
Q 013962 321 ------------------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351 (433)
Q Consensus 321 ------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~ 351 (433)
-|.++-.||+|||||.|+ |.|+-+|+...+
T Consensus 561 K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP-GKCfRLYt~~aY 608 (902)
T KOG0923|consen 561 KQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP-GKCFRLYTAWAY 608 (902)
T ss_pred cccCcCCCcCceeEEEeeechhhhhhhccccCCCCC-CceEEeechhhh
Confidence 367788999999999975 999999985543
No 120
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.93 E-value=9.3e-25 Score=212.03 Aligned_cols=329 Identities=17% Similarity=0.221 Sum_probs=223.1
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQ-TPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
++|.||++.++++. -+=+.|++.++|.|||+..+..+..-.+.+ ......+....||||| ..|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 47999999999886 234789999999999988765555444432 2333444666899999 59999999999999
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 165 (433)
+.. +++..+.|........+.-..+++|+|++++.+.+.+.. ..-.++.|+|+||-|-+.+. ...+.+..+.+
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 864 667777777665555555556789999999998644332 11245889999999988774 55666677777
Q ss_pred CCCCcEEEEEeecchH-HH-------------------------------------------------------------
Q 013962 166 PDKHQTLLFSATMPVE-IE------------------------------------------------------------- 183 (433)
Q Consensus 166 ~~~~~~i~~SAT~~~~-~~------------------------------------------------------------- 183 (433)
..+.+ +.+|+||..+ +.
T Consensus 1127 ~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LR 1205 (1549)
T KOG0392|consen 1127 RANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLR 1205 (1549)
T ss_pred hhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 65554 6689998100 00
Q ss_pred ---------------------------HHHHHhc------------------------------------CCCeEEEecC
Q 013962 184 ---------------------------ALAQEYL------------------------------------TDPVQVKVGK 200 (433)
Q Consensus 184 ---------------------------~~~~~~~------------------------------------~~~~~~~~~~ 200 (433)
.+.+.+. .+|..+...
T Consensus 1206 RlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~- 1284 (1549)
T KOG0392|consen 1206 RLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP- 1284 (1549)
T ss_pred HHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC-
Confidence 0000000 000000000
Q ss_pred cCCCCC----C---ceEEEEEcCchhhHHHHHHHHHHHHHhhhhcC-------CCCCeEEEEEeccccHHHHHHHHHHCC
Q 013962 201 VSSPTA----N---VIQILEKVSENEKVDRLLALLVEEAFLAEKSC-------HPFPLTIVFVERKTRCDEVSEALVAEG 266 (433)
Q Consensus 201 ~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lvf~~~~~~~~~l~~~L~~~~ 266 (433)
.++... . .......+....|..++...+.+......... ..++++||||+-+..+..+.+.|.+..
T Consensus 1285 ~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~ 1364 (1549)
T KOG0392|consen 1285 VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKY 1364 (1549)
T ss_pred CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhh
Confidence 000000 0 00000001122344444444444333211110 145889999999999999999887663
Q ss_pred ---CceeeecCCCCHHHHHHHHHHHhcC-CCcEEE-EecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCcee
Q 013962 267 ---LHAVALHGGRNQSDRESALRDFRNG-STNILV-ATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 341 (433)
Q Consensus 267 ---~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 341 (433)
.....+.|..++.+|.++.++|.++ .++||+ +|.+.+-|+|+.+++.||+++..|+|..-.|...||+|.||+..
T Consensus 1365 mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1365 MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 3345789999999999999999999 778777 56899999999999999999999999999999999999999888
Q ss_pred EEEEeccc
Q 013962 342 ATSFYTDR 349 (433)
Q Consensus 342 ~~~~~~~~ 349 (433)
+-+|-...
T Consensus 1445 VNVyRlIt 1452 (1549)
T KOG0392|consen 1445 VNVYRLIT 1452 (1549)
T ss_pred eeeeeehh
Confidence 77765443
No 121
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=3.2e-24 Score=208.98 Aligned_cols=324 Identities=17% Similarity=0.183 Sum_probs=218.7
Q ss_pred CCCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 8 EYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+-.++|+||.+.++.++ .++++|++..+|.|||+.. +..+.++..... -.+..||+||...+.. |.+++.
T Consensus 367 ~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~----~~gpflvvvplst~~~-W~~ef~ 440 (1373)
T KOG0384|consen 367 GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ----IHGPFLVVVPLSTITA-WEREFE 440 (1373)
T ss_pred ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh----ccCCeEEEeehhhhHH-HHHHHH
Confidence 33789999999999988 6789999999999999653 334444443211 1455799999877766 999999
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHh----hC-----CCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSEL----RG-----GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
.+. ++++.++.|+.......+.+ .. +.+++++|++.++..... ..--.+.+++|||||++.+.
T Consensus 441 ~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~-- 512 (1373)
T KOG0384|consen 441 TWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND-- 512 (1373)
T ss_pred HHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--
Confidence 986 68899999987655443332 12 478999999988643221 11224779999999999875
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeecch-HHHHHHHHh-cCCCeEEE---------------------------------ec
Q 013962 155 EPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQEY-LTDPVQVK---------------------------------VG 199 (433)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~~~~-~~~~~~~~---------------------------------~~ 199 (433)
...+...+..+.-+. .+++|+||-. ++.++.... +..|.... -.
T Consensus 513 ~~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 513 ESKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred HHHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 333444466665444 5778888842 222222110 11111110 00
Q ss_pred CcCCCCCCceEEEEE-c------------------------------------------------CchhhHH--------
Q 013962 200 KVSSPTANVIQILEK-V------------------------------------------------SENEKVD-------- 222 (433)
Q Consensus 200 ~~~~~~~~~~~~~~~-~------------------------------------------------~~~~~~~-------- 222 (433)
...+.++...+++.. + ..++++.
T Consensus 592 vekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~ 671 (1373)
T KOG0384|consen 592 VEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMR 671 (1373)
T ss_pred hccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcch
Confidence 011111111111110 0 0001100
Q ss_pred --HHHHHHHHH------HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc---C
Q 013962 223 --RLLALLVEE------AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---G 291 (433)
Q Consensus 223 --~~~~~~~~~------~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g 291 (433)
.+..++... -....+-...++++|||.+.+.....|+++|...+++.-.+.|....+.|+..++.|.. .
T Consensus 672 d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sd 751 (1373)
T KOG0384|consen 672 DEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSD 751 (1373)
T ss_pred HHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCC
Confidence 000000000 00011112456899999999999999999999999999999999999999999999986 3
Q ss_pred CCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEe
Q 013962 292 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 292 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
..-.|+||.+.+-|||+..+++||+||..|+|..-+|...||+|.||...|-+|-
T Consensus 752 dFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYR 806 (1373)
T KOG0384|consen 752 DFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYR 806 (1373)
T ss_pred ceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEE
Confidence 5568999999999999999999999999999999999999999999987766664
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.93 E-value=5.5e-23 Score=200.10 Aligned_cols=134 Identities=22% Similarity=0.347 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 013962 218 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297 (433)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 297 (433)
..+...+...+.... ..+.++||||+++..++.+++.|...++++..+|++++..+|..+++.|+.|+++|+|
T Consensus 425 ~~qi~~Ll~eI~~~~-------~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV 497 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV-------ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV 497 (655)
T ss_pred cchHHHHHHHHHHHH-------cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEE
Confidence 344555555555432 3456799999999999999999999999999999999999999999999999999999
Q ss_pred EecccccCcccCCCcEEEEcc-----CCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 298 ATDVASRGLDVMGVAHVVNLD-----LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 298 ~T~~~~~Gidip~~~~Vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
||+.+++|+|+|++++||+++ .|.+...|+|++||+||. ..|.+++++...+......+.+
T Consensus 498 ~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 498 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999988 788999999999999998 5799999998877666555544
No 123
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-24 Score=192.83 Aligned_cols=336 Identities=15% Similarity=0.152 Sum_probs=222.7
Q ss_pred CCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.-++.+.|+|.+.+...+ .|..+++...+|.|||+.++..+..+..+ -..||+|| .++...|++++.+|
T Consensus 194 kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE---------wplliVcP-AsvrftWa~al~r~ 263 (689)
T KOG1000|consen 194 KLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE---------WPLLIVCP-ASVRFTWAKALNRF 263 (689)
T ss_pred HHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc---------CcEEEEec-HHHhHHHHHHHHHh
Confidence 345678999999998887 56789999999999999876544444333 33799999 57777799999999
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 165 (433)
+..... +.++.++.+... .+-....|.|.+++.+..+-. ...-..+.+||+||+|++.+. -....+.++..+
T Consensus 264 lps~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dll 335 (689)
T KOG1000|consen 264 LPSIHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLL 335 (689)
T ss_pred cccccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHH
Confidence 876533 344445444221 122335799999998854422 122345889999999988765 445577777777
Q ss_pred CCCCcEEEEEeecc----h---------------HHHHHHHHhcCCCeEEEecCcCC-----------------------
Q 013962 166 PDKHQTLLFSATMP----V---------------EIEALAQEYLTDPVQVKVGKVSS----------------------- 203 (433)
Q Consensus 166 ~~~~~~i~~SAT~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~----------------------- 203 (433)
+...++|++|+||. . +..++..+|+... .+.......
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k-~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~ 414 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGK-QVRFCFDYKGCTNLEELAALLFKRLMIRRLKA 414 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcc-ccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77788999999982 1 1222222332110 010000000
Q ss_pred -----CCCCceEEEEEcCc--hhhHHHHH-------------------------------HHHHHHHHhh-hhcCCCCCe
Q 013962 204 -----PTANVIQILEKVSE--NEKVDRLL-------------------------------ALLVEEAFLA-EKSCHPFPL 244 (433)
Q Consensus 204 -----~~~~~~~~~~~~~~--~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~~ 244 (433)
.++........... ......+. ..+.+..... -....+..+
T Consensus 415 dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~K 494 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRK 494 (689)
T ss_pred HHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCce
Confidence 11111111111111 00011110 0011111110 012245578
Q ss_pred EEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC-CCcE-EEEecccccCcccCCCcEEEEccCCCC
Q 013962 245 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNI-LVATDVASRGLDVMGVAHVVNLDLPKT 322 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidip~~~~Vi~~~~~~s 322 (433)
++|||......+.+...+.+.++....+.|..++.+|....+.|+.+ ++.| +++..++++|+++...+.|++...+|+
T Consensus 495 flVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wn 574 (689)
T KOG1000|consen 495 FLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWN 574 (689)
T ss_pred EEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999975 4443 446688999999999999999999999
Q ss_pred hhHHHhhcccCCCCCCceeEEEEecc----ccHHHHHHHHHHh
Q 013962 323 VEDYVHRIGRTGRGGSMGQATSFYTD----RDMLLVAQIKKAI 361 (433)
Q Consensus 323 ~~~~~Q~~GR~~R~g~~g~~~~~~~~----~d~~~~~~~~~~~ 361 (433)
+...+|.-.|++|.|++..+.++|.- .|...+..+.+.+
T Consensus 575 PgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 575 PGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred CceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 99999999999999998777666642 2455555555444
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=1.9e-22 Score=204.97 Aligned_cols=339 Identities=18% Similarity=0.203 Sum_probs=202.9
Q ss_pred cCCCCCCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH-
Q 013962 6 FHEYTRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK- 80 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~----~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~- 80 (433)
..||. +||.|.+.+. .+..++++++.||||+|||++|++|++..+.. +.+++|.+||++|..|+..
T Consensus 241 ~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 241 RLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred hcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCcHHHHHHHHHH
Confidence 45664 8999998666 44467889999999999999999999887652 6689999999999999965
Q ss_pred HHHHHhccCC-CceEEEEECCCCH-----------------H--------------------------------------
Q 013962 81 EVKALSRSLD-SFKTAIVVGGTNI-----------------A-------------------------------------- 104 (433)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~-----------------~-------------------------------------- 104 (433)
++..+.+.++ .+++..+.|..+. .
T Consensus 312 ~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~ 391 (850)
T TIGR01407 312 DIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRH 391 (850)
T ss_pred HHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhc
Confidence 4554433221 3566666554321 0
Q ss_pred ----------------HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-------C-----HH
Q 013962 105 ----------------EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-------F-----EP 156 (433)
Q Consensus 105 ----------------~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-------~-----~~ 156 (433)
.........++|+|+++..|+..+......+.+..++||||||++.+.- . ..
T Consensus 392 ~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~ 471 (850)
T TIGR01407 392 DGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKY 471 (850)
T ss_pred CCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHH
Confidence 0000012356799999998888775544445667899999999764210 0 00
Q ss_pred H----------------------------------------------------------------HHHHHhh--------
Q 013962 157 Q----------------------------------------------------------------IREVMQN-------- 164 (433)
Q Consensus 157 ~----------------------------------------------------------------~~~~~~~-------- 164 (433)
. +...+..
T Consensus 472 ~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l 551 (850)
T TIGR01407 472 QIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNI 551 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 0000000
Q ss_pred ---C-------------------------------------CCCCcEEEEEeecchH-HHHHHHHhcCCC--eEEEecCc
Q 013962 165 ---L-------------------------------------PDKHQTLLFSATMPVE-IEALAQEYLTDP--VQVKVGKV 201 (433)
Q Consensus 165 ---~-------------------------------------~~~~~~i~~SAT~~~~-~~~~~~~~~~~~--~~~~~~~~ 201 (433)
+ +....+|++|||+... ........++-+ ......
T Consensus 552 ~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~-- 629 (850)
T TIGR01407 552 EQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIE-- 629 (850)
T ss_pred HHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceec--
Confidence 0 0023578999999632 122333333321 111221
Q ss_pred CCCCC--CceEEEEE--cC------chhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC--Cce
Q 013962 202 SSPTA--NVIQILEK--VS------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHA 269 (433)
Q Consensus 202 ~~~~~--~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~ 269 (433)
.++.+ .....+.. ++ .......+...+.+... ...+++|||++|....+.+++.|.... ...
T Consensus 630 ~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~------~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~ 703 (850)
T TIGR01407 630 PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA------ITSPKILVLFTSYEMLHMVYDMLNELPEFEGY 703 (850)
T ss_pred CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH------hcCCCEEEEeCCHHHHHHHHHHHhhhccccCc
Confidence 11111 11111111 11 11112223333322221 123569999999999999999997521 112
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc--EEEEccCCCC-------------------------
Q 013962 270 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA--HVVNLDLPKT------------------------- 322 (433)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~--~Vi~~~~~~s------------------------- 322 (433)
..+..+.. ..|..+++.|++++..||++|+.+++|+|+|+.. +||+.+.|..
T Consensus 704 ~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~ 782 (850)
T TIGR01407 704 EVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY 782 (850)
T ss_pred eEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh
Confidence 23333333 5788999999999999999999999999999855 6777776641
Q ss_pred -----hhHHHhhcccCCCCCCceeEEEEeccc--cHHHHHHHHHHhh
Q 013962 323 -----VEDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAIV 362 (433)
Q Consensus 323 -----~~~~~Q~~GR~~R~g~~g~~~~~~~~~--d~~~~~~~~~~~~ 362 (433)
...+.|.+||.-|...+..++++++.. ....-+.+.+.++
T Consensus 783 ~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 783 VLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 123469999999987655555665443 2233344444444
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.8e-23 Score=185.09 Aligned_cols=175 Identities=22% Similarity=0.256 Sum_probs=132.6
Q ss_pred CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 013962 168 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 247 (433)
Q Consensus 168 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 247 (433)
..|+|++||||.+...+.... ..+. .+..+..... ..+..-+....++.++..+.... ..+.++||
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vve-QiIRPTGLlD---P~ievRp~~~QvdDL~~EI~~r~-------~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVE-QIIRPTGLLD---PEIEVRPTKGQVDDLLSEIRKRV-------AKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeE-EeecCCCCCC---CceeeecCCCcHHHHHHHHHHHH-------hcCCeEEE
Confidence 458999999997553332221 1111 1111111111 11222244566777777777655 34467999
Q ss_pred EEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC-----CC
Q 013962 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP-----KT 322 (433)
Q Consensus 248 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~-----~s 322 (433)
-+-|++.++.+.++|...|+++..+|++...-+|.++++..+.|.++|||..+.+-+|+|+|.|..|.++|.. .|
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRs 531 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRS 531 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 58
Q ss_pred hhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 323 VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 323 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
..+.+|.+|||+|. -.|.++.|...-..+.-+.+
T Consensus 532 e~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 532 ERSLIQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred cchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 99999999999997 45999998866544444333
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.91 E-value=7.4e-22 Score=189.25 Aligned_cols=332 Identities=13% Similarity=0.108 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHHHHhhcC----------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVALSG----------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~----------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
...|+|||++++..+..+ ..+|++..+|+|||+..+..++..+.+.+ ...+--.+.|||+| ..|+..|
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P-~~~~~~~k~lVV~P-~sLv~nW 313 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP-QAKPLINKPLVVAP-SSLVNNW 313 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc-CccccccccEEEcc-HHHHHHH
Confidence 356999999999988631 24899999999999976555544444433 11112278999999 6889999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCH--HHHHHHh-----hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNI--AEQRSEL-----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
+++|.+|... ..+....+.+.... -.....+ .-...|.+.+++.+.+.... .....++++|+||.|++.+
T Consensus 314 kkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 314 KKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc
Confidence 9999999753 25666666776653 0111111 12356888888988655543 3456789999999999877
Q ss_pred CCCHHHHHHHHhhCCCCCcEEEEEeecchH-HHHHHHH------------------------------------------
Q 013962 152 MGFEPQIREVMQNLPDKHQTLLFSATMPVE-IEALAQE------------------------------------------ 188 (433)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~~------------------------------------------ 188 (433)
. ...+...+..+. ..+-|++|+||-.+ +.+....
T Consensus 391 ~--~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 5 344555555564 45578899999211 1111000
Q ss_pred -----hcCCCeEEEec-CcCCCCCCceEEEEEcCchhhHHHHHHHHHHHH--------------------H---hhh---
Q 013962 189 -----YLTDPVQVKVG-KVSSPTANVIQILEKVSENEKVDRLLALLVEEA--------------------F---LAE--- 236 (433)
Q Consensus 189 -----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~---~~~--- 236 (433)
........... ......|........++.......+...+.... . ...
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 00000000000 111112222333333333322222222222110 0 000
Q ss_pred ---h-cC--C--------------------------------CCCeEEEEEeccc----cHHHHHHHHHHCCCceeeecC
Q 013962 237 ---K-SC--H--------------------------------PFPLTIVFVERKT----RCDEVSEALVAEGLHAVALHG 274 (433)
Q Consensus 237 ---~-~~--~--------------------------------~~~~~lvf~~~~~----~~~~l~~~L~~~~~~~~~~~~ 274 (433)
. .. . ...++++|+.-+. ..+.+...++..|..+..++|
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 0 00 0 0022333333332 334444444556999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--c-EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEecc
Q 013962 275 GRNQSDRESALRDFRNGST--N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 275 ~~~~~~r~~~~~~f~~g~~--~-vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
.|+..+|+.+++.|.+..- . .|.+|-+.+.|+|+-++..||.+|++|+|+.-.|.++|+-|.||+..|++|-..
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEee
Confidence 9999999999999997432 3 455667999999999999999999999999999999999999999999888643
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=198.19 Aligned_cols=318 Identities=19% Similarity=0.203 Sum_probs=223.1
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 92 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 92 (433)
+.++.+.+.++.+++.+++.+.||+|||......+++...... ...++++.-|++--+...++++..-.....+-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 5678888999999999999999999999988888888776654 36678999999877777887776644322233
Q ss_pred eEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc-cCCCHHHHHHHHhhCCCCCcE
Q 013962 93 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQT 171 (433)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (433)
.++.-.+..+ .......+.++|.+.|++.+.. ...+.++..||+||+|.=. +.++.-.+.+.+....+..++
T Consensus 250 ~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 3333332222 1223478999999999999887 5667889999999999533 334555555555556678999
Q ss_pred EEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCC----------------ceEEE-----------EEcCchhhHHHH
Q 013962 172 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN----------------VIQIL-----------EKVSENEKVDRL 224 (433)
Q Consensus 172 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-----------~~~~~~~~~~~~ 224 (433)
|+||||+. .+....|++....+.+.....+... ..+.. ..+...+-...+
T Consensus 323 ILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 99999997 3334455554444333222111100 00000 000000111122
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-------CCceeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 013962 225 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDRESALRDFRNGSTNILV 297 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 297 (433)
+..+...... ....+.+|||.+...++..+.+.|... ..-+..+|+.|+..+++.+.+.--.|..+|++
T Consensus 400 i~~li~~I~~----~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 400 IEDLIEYIDE----REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred HHHHHHhccc----CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 2222222221 144577999999999999999999653 24577899999999999999988899999999
Q ss_pred EecccccCcccCCCcEEEEccCCC------------------ChhHHHhhcccCCCCCCceeEEEEecccc
Q 013962 298 ATDVASRGLDVMGVAHVVNLDLPK------------------TVEDYVHRIGRTGRGGSMGQATSFYTDRD 350 (433)
Q Consensus 298 ~T~~~~~Gidip~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d 350 (433)
+|++++.+|.|+++-.||..+..+ |...-.||+|||||- .+|.||-+++...
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999999765432 566778999999998 6799999997654
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=194.00 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|-.||.+.+..+=.+++++|.|||.+|||++. ...++..++.. +.+.++++.|+++|++|..-.+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRes-----D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRES-----DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhc-----CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 577899999999999999999999999999865 44455555533 378899999999999999888877653221
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc---CCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 167 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~---~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~ 167 (433)
-.....+.|+...+-... .-.++|+|+-|+-+-..+.. ...+..++++||+||+|.+.+..-...+..++...
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 122222333322111100 12589999999988766665 34456789999999999998776555666665544
Q ss_pred CCcEEEEEeecc
Q 013962 168 KHQTLLFSATMP 179 (433)
Q Consensus 168 ~~~~i~~SAT~~ 179 (433)
.+.++++|||..
T Consensus 661 ~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 PCPFLVLSATIG 672 (1330)
T ss_pred CCCeeEEecccC
Confidence 477999999984
No 129
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.91 E-value=1.7e-22 Score=188.92 Aligned_cols=326 Identities=17% Similarity=0.175 Sum_probs=214.4
Q ss_pred cCCCCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
..|+ ++.+||.-.++++. .+-+.|++..+|.|||..+ ++.+.++.+.. ..+.-|||||...|-+ |.++
T Consensus 395 ~s~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g-----~~gpHLVVvPsSTleN-WlrE 466 (941)
T KOG0389|consen 395 SSGI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG-----NPGPHLVVVPSSTLEN-WLRE 466 (941)
T ss_pred CCCC-cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC-----CCCCcEEEecchhHHH-HHHH
Confidence 3445 48999999999886 3446899999999999654 45555555532 2445599999888765 9999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHH-h---hCCCcEEEeccHHHHHHHH-cCCCCCCCccEEEEcccchhccCCCHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSE-L---RGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~Ivv~T~~~l~~~~~-~~~~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
+.+|+ +.+++..++|........+. + ..+++|+++|+.....--. +..+.-.+++++|+||+|.+.+.. ..
T Consensus 467 f~kwC---Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-Se 542 (941)
T KOG0389|consen 467 FAKWC---PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SE 542 (941)
T ss_pred HHHhC---CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hH
Confidence 99998 57889999998754333222 2 2378999999976521100 001112458899999999888763 45
Q ss_pred HHHHHHhhCCCCCcEEEEEeecch-HHHHHH-------------------------------------------------
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPV-EIEALA------------------------------------------------- 186 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~~------------------------------------------------- 186 (433)
++..++..- ...-+++|+||-. ++.+++
T Consensus 543 Ry~~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 543 RYKHLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHHHhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 566655432 3345889999810 000000
Q ss_pred -------------HHhcCCCeEEEecCcC------------------------CCCCC----------------ceEEE-
Q 013962 187 -------------QEYLTDPVQVKVGKVS------------------------SPTAN----------------VIQIL- 212 (433)
Q Consensus 187 -------------~~~~~~~~~~~~~~~~------------------------~~~~~----------------~~~~~- 212 (433)
..+......+...... ....+ ..+.|
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 0000000000000000 00000 00000
Q ss_pred -----------------EE--------------------------------c-----CchhhHHHHHHHHHHHHHhhhhc
Q 013962 213 -----------------EK--------------------------------V-----SENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 213 -----------------~~--------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
.. + -...|...+-.++.+.
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~------- 773 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKI------- 773 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHH-------
Confidence 00 0 0001111111111111
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCC-C-cEEEEecccccCcccCCCcEEEE
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-T-NILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
...+.++|||........-+.-.|..+++....+.|.+.-.+|+.++..|..++ + -.|++|-+.+.|||+..+++||+
T Consensus 774 k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 774 KKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 134578999999999999999999999999999999999999999999999764 3 36779999999999999999999
Q ss_pred ccCCCChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 317 LDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 317 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
+|...+|-.-.|.-.||+|.|+...+.++-......
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999999988877665544433
No 130
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.3e-22 Score=186.65 Aligned_cols=310 Identities=19% Similarity=0.229 Sum_probs=204.0
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 92 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 92 (433)
...+.+.+..+..++-++|.+.||||||......+++.-+. +.+-+-+..|++.-+...+.++..-..-.-+-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~-------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA-------DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc-------cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 34566777778888889999999999997643333332222 24566777799999888888877654221133
Q ss_pred eEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc-cCCC-HHHHHHHHhhCCCCCc
Q 013962 93 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGF-EPQIREVMQNLPDKHQ 170 (433)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~-~~~~-~~~~~~~~~~~~~~~~ 170 (433)
.++....-.+ .....+.|-++|.+.|+...... ..+..+++||+||||.-. +.+. ...++.++.. ....+
T Consensus 431 ~VGYsIRFEd------vT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 431 TVGYSIRFED------VTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred ccceEEEeee------cCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccce
Confidence 3333221111 11234679999999997665542 346778999999999533 2221 1122333332 34778
Q ss_pred EEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEe
Q 013962 171 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 250 (433)
Q Consensus 171 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~ 250 (433)
+|.+|||+... ....|+++...+.+.... -.+...+...+.++.+.+.+....... .. .+.+-+|||..
T Consensus 503 liVtSATm~a~---kf~nfFgn~p~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ih----l~-~~~GdilIfmt 571 (1042)
T KOG0924|consen 503 LIVTSATMDAQ---KFSNFFGNCPQFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIH----LS-GPPGDILIFMT 571 (1042)
T ss_pred EEEeeccccHH---HHHHHhCCCceeeecCCc---cceEEEeccCchHHHHHHHHhhheEee----cc-CCCCCEEEecC
Confidence 99999999632 334455533233332211 122333333444444444333332221 11 23345999999
Q ss_pred ccccHHHHHHHHHHC----------CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC-
Q 013962 251 RKTRCDEVSEALVAE----------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL- 319 (433)
Q Consensus 251 ~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~- 319 (433)
..+..+..+..++.. ++.+..+++.++.+-+..+++.-..|..+++|||+++++.+.+|++.+||..+.
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 998877766665442 578899999999999998888777888899999999999999999999998665
Q ss_pred -----------------CCChhHHHhhcccCCCCCCceeEEEEeccc
Q 013962 320 -----------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 349 (433)
Q Consensus 320 -----------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 349 (433)
|-|.+.-.||.|||||.|. |.||-+|+..
T Consensus 652 K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p-G~cYRlYTe~ 697 (1042)
T KOG0924|consen 652 KLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP-GTCYRLYTED 697 (1042)
T ss_pred eeeecccccccceeEEEechhccchhhccccCCCCC-cceeeehhhh
Confidence 3467778899999999975 9999999763
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.90 E-value=5.5e-24 Score=200.48 Aligned_cols=330 Identities=19% Similarity=0.237 Sum_probs=199.2
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~----~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
.-..-.+|||||+.|+++..++ .+.-+.|.+|+|||++++- +.+.+. ..++|+++|+.+|..|..+
T Consensus 155 ~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 155 PLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AARILFLVPSISLLSQTLR 224 (1518)
T ss_pred ccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhheEeecchHHHHHHHHH
Confidence 3445568999999999999864 4577889999999998753 444432 4679999999999999988
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHH-------------------------HHhhCCCcEEEeccHHHHHHHHcCCCCC
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQR-------------------------SELRGGVSIVVATPGRFLDHLQQGNTSL 135 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~Ivv~T~~~l~~~~~~~~~~~ 135 (433)
++..-... ++....++.+....... .....+--|+++|++++-..-......+
T Consensus 225 ew~~~~~l--~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 225 EWTAQKEL--DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHhhccCc--cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 88765432 45555555543211000 0112455699999999977777667778
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCC-----CCCcEEEEEeecchHHHH--------------------------
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEIEA-------------------------- 184 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~~SAT~~~~~~~-------------------------- 184 (433)
..+++||.||||+-....+...-.......+ +..+.+.|||||.-..+.
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~ 382 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFH 382 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhh
Confidence 8999999999998653221111111111111 123457899998321111
Q ss_pred -------HHHHhcCCCeEEEecCcCCCCCCceEEEE-EcCchhhHHHHHHHH------HHH-HHhh-----hhcCCCCCe
Q 013962 185 -------LAQEYLTDPVQVKVGKVSSPTANVIQILE-KVSENEKVDRLLALL------VEE-AFLA-----EKSCHPFPL 244 (433)
Q Consensus 185 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~-~~~~-----~~~~~~~~~ 244 (433)
.....+.+...+.............+... .....-..+.....+ .++ .... .....+-.+
T Consensus 383 rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~R 462 (1518)
T COG4889 383 RLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQR 462 (1518)
T ss_pred cccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHH
Confidence 11112222222221111111111111111 111111111111111 111 1000 011123356
Q ss_pred EEEEEeccccHHHHHHHHHH-------------CCC--ceeeecCCCCHHHHHHHHH---HHhcCCCcEEEEecccccCc
Q 013962 245 TIVFVERKTRCDEVSEALVA-------------EGL--HAVALHGGRNQSDRESALR---DFRNGSTNILVATDVASRGL 306 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~g~~~vlv~T~~~~~Gi 306 (433)
.+-||.+++....+++.+.. .++ .+....|.|+..+|...+. .|...+++||-...++++|+
T Consensus 463 AIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGV 542 (1518)
T COG4889 463 AIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGV 542 (1518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCC
Confidence 78899988877666655432 133 4455668899999965543 34567889999999999999
Q ss_pred ccCCCcEEEEccCCCChhHHHhhcccCCCCCC-ceeEEEEe
Q 013962 307 DVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS-MGQATSFY 346 (433)
Q Consensus 307 dip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~ 346 (433)
|+|..+.||++++-.+..+.+|.+||+.|..+ +..+++++
T Consensus 543 DVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 543 DVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999999999999744 24455554
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.8e-23 Score=183.33 Aligned_cols=316 Identities=16% Similarity=0.153 Sum_probs=206.1
Q ss_pred cccCCCCCCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~~~~~---~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
|+...-..+||||+.++..+..+ ++.+|..|+|+|||++-+.++..- .+.+|++|.+..-++||..
T Consensus 295 idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 295 IDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred cCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHH
Confidence 45566778999999999999944 579999999999998765443332 7789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC--------CCCCCCccEEEEcccchhccC
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--------~~~~~~~~~vIiDE~h~~~~~ 152 (433)
+++.|... .+-.++..+.+.. +....++.|+|+|+.++..--.+. ...-..++++++||+|.+...
T Consensus 364 Qfk~wsti-~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 364 QFKQWSTI-QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHhhccc-CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH
Confidence 99998753 3455666665543 123467899999998774322111 012345899999999988766
Q ss_pred CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHH-hcCCCeEEEecCcC---------------------------CC
Q 013962 153 GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE-YLTDPVQVKVGKVS---------------------------SP 204 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------------~~ 204 (433)
.|+..+.-+..+. .+++|||+-.+...+... |+..|..+...-.. -.
T Consensus 438 MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 438 MFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred HHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh
Confidence 5665555554444 499999985443332221 11111111100000 00
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHH
Q 013962 205 TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 284 (433)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 284 (433)
...-...+.++-+..+... ...+.+... ..+.++|||..+.-.....+-.|.+ ..++|.+++.+|..+
T Consensus 513 ~~t~kr~lLyvMNP~KFra-CqfLI~~HE------~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 513 ENTRKRMLLYVMNPNKFRA-CQFLIKFHE------RRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKI 580 (776)
T ss_pred hhhhhhheeeecCcchhHH-HHHHHHHHH------hcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHH
Confidence 0000111111222222222 222222211 3557799999887766666655532 356789999999999
Q ss_pred HHHHhcC-CCcEEEEecccccCcccCCCcEEEEccCC-CChhHHHhhcccCCCCCC------ceeEEEEeccccHHH
Q 013962 285 LRDFRNG-STNILVATDVASRGLDVMGVAHVVNLDLP-KTVEDYVHRIGRTGRGGS------MGQATSFYTDRDMLL 353 (433)
Q Consensus 285 ~~~f~~g-~~~vlv~T~~~~~Gidip~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~d~~~ 353 (433)
++.|+-. .++.++-+-+....+|+|.++++|+.... .|..+-.||.||..|.-+ ....+.+++.+....
T Consensus 581 LqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred HHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 9999965 67888899999999999999999987655 478899999999999622 244555565554443
No 133
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=7.4e-22 Score=168.31 Aligned_cols=189 Identities=44% Similarity=0.614 Sum_probs=150.8
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
..+++.+|+++|.+++..+... +++++.++||+|||.+++.+++..+.... ...+++++|+..++.|+.+.+.
T Consensus 2 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 2 EKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHH
Confidence 4577889999999999999988 89999999999999988888888766532 4679999999999999999999
Q ss_pred HHhccCCCceEEEEECCCCHHHHHHHhhCC-CcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
.++.... .......++............+ .+++++|++.+.+.+.........++++|+||+|.+....+...+..++
T Consensus 76 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 76 KLGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8875432 2333344444433333334444 4999999999999888766666778999999999998756788888888
Q ss_pred hhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecC
Q 013962 163 QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 200 (433)
Q Consensus 163 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 200 (433)
..++...+++++||||+.........+......+....
T Consensus 155 ~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88877899999999999888888888887666555443
No 134
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.8e-21 Score=180.88 Aligned_cols=384 Identities=21% Similarity=0.255 Sum_probs=229.8
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE
Q 013962 17 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 96 (433)
Q Consensus 17 ~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 96 (433)
++++++|..+.-+||+|.||||||...-..+.+.-..... ..+.+-+=|.-|++.-+--++++...-...+ +-.++.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~--~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ--SSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc--CCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeE
Confidence 4677788887889999999999997543333333222211 1124567788899988887777766544332 233332
Q ss_pred E--ECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-C----CHHHHHHHHhhCC---
Q 013962 97 V--VGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-G----FEPQIREVMQNLP--- 166 (433)
Q Consensus 97 ~--~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~----~~~~~~~~~~~~~--- 166 (433)
- +.+. ....+.|-+||.+.|++.+.+. +.+..++.||+||||.-.-. + ....+-.+.+...
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 2221 2345789999999999887763 45778999999999953211 0 1111112222221
Q ss_pred ---CCCcEEEEEeecchHHHHHHHHhcC-CCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCC
Q 013962 167 ---DKHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPF 242 (433)
Q Consensus 167 ---~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (433)
...++|.||||+.......-..++. .|..+.+.... ...-..++.....+.+.+...+....... -|.
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ------fPVsIHF~krT~~DYi~eAfrKtc~IH~k--LP~ 481 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ------FPVSIHFNKRTPDDYIAEAFRKTCKIHKK--LPP 481 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc------CceEEEeccCCCchHHHHHHHHHHHHhhc--CCC
Confidence 2457899999996443322222322 22233322111 11112222223334444444443333222 345
Q ss_pred CeEEEEEeccccHHHHHHHHHHC---------------------------------------------------------
Q 013962 243 PLTIVFVERKTRCDEVSEALVAE--------------------------------------------------------- 265 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~--------------------------------------------------------- 265 (433)
+.+|||+....++..+++.|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 66999999999999999988662
Q ss_pred ------------------------------------------CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 013962 266 ------------------------------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303 (433)
Q Consensus 266 ------------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 303 (433)
.+-|..+++-++.+.+..+++.--+|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 01145556667777777787777788888999999999
Q ss_pred cCcccCCCcEEEEccCCC------------------ChhHHHhhcccCCCCCCceeEEEEeccccHH--HH----HHH--
Q 013962 304 RGLDVMGVAHVVNLDLPK------------------TVEDYVHRIGRTGRGGSMGQATSFYTDRDML--LV----AQI-- 357 (433)
Q Consensus 304 ~Gidip~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~--~~----~~~-- 357 (433)
+.+.||+++.||..+..+ |-++--||+|||||.|. |.||-+|+..-+. +. ..|
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp-GHcYRLYSSAVf~~~Fe~fS~PEIlk 720 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP-GHCYRLYSSAVFSNDFEEFSLPEILK 720 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC-CceeehhhhHHhhcchhhhccHHHhh
Confidence 999999999999877643 45555799999999975 9999999864322 11 111
Q ss_pred ---HHHhhhhcccc-----cccchhhhHHHHHHHHHHHH-hcCCCCccccccccCC---CCchHHHHHHHHHhccc
Q 013962 358 ---KKAIVDAESGN-----AVAFATGKVARRKEREAAAA-QKGATVATSKLSMMGP---SVNIEDKYRFMIAASNM 421 (433)
Q Consensus 358 ---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~ 421 (433)
+..+..-.+++ .++|...--..+.+.+++.. ..|+-...-.+...|+ .|.++.+|.+|++-+.+
T Consensus 721 ~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q 796 (1172)
T KOG0926|consen 721 KPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQ 796 (1172)
T ss_pred CcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHh
Confidence 11111112222 24444443333333333332 2333222335555566 78899999999987653
No 135
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=9.6e-21 Score=186.07 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 013962 219 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 298 (433)
.+...+...+.... ..+.+++|||+++..++.+++.|...++++..+|++++..+|..+++.|+.|.+.|+||
T Consensus 430 ~q~~~L~~~L~~~~-------~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~ 502 (652)
T PRK05298 430 GQVDDLLSEIRKRV-------AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (652)
T ss_pred ccHHHHHHHHHHHH-------hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEE
Confidence 34555555555432 34567999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCcccCCCcEEEEccC-----CCChhHHHhhcccCCCCCCceeEEEEeccccH
Q 013962 299 TDVASRGLDVMGVAHVVNLDL-----PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351 (433)
Q Consensus 299 T~~~~~Gidip~~~~Vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~ 351 (433)
|+.+++|+|+|++++||+++. |.+...|+||+||+||. ..|.+++++...+.
T Consensus 503 t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 503 INLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred eCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 999999999999999999875 68999999999999996 67999999985433
No 136
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.88 E-value=6e-21 Score=183.74 Aligned_cols=373 Identities=18% Similarity=0.180 Sum_probs=267.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..++|+-.+.+..+.-+..-++.|.||-|||+++.+|+.-..+. |+.+.+++.+..|+...++++..++.++
T Consensus 77 lg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred cCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 35777888888888888889999999999999999999888776 8889999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhcc----------C
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRMLD----------M 152 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~~----------~ 152 (433)
++++++...+....+....+. ++|.++|...| +++++.+.. ....+.+.|+||++.++= .
T Consensus 149 -GlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 149 -GLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred -CCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 899999999988777766654 79999999988 666655422 234588999999996431 1
Q ss_pred ---C---CHHHHHHHHhhCCC-----------------------------------------------------------
Q 013962 153 ---G---FEPQIREVMQNLPD----------------------------------------------------------- 167 (433)
Q Consensus 153 ---~---~~~~~~~~~~~~~~----------------------------------------------------------- 167 (433)
+ .+..+..+...+..
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 0 12222222222211
Q ss_pred ----------------------------------------------------------CCcEEEEEeecchHHHHHHHHh
Q 013962 168 ----------------------------------------------------------KHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 168 ----------------------------------------------------------~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
..++.+||+|......++..-|
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 1133445555444433333333
Q ss_pred cCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCce
Q 013962 190 LTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 269 (433)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~ 269 (433)
. ...+.++...+..+.......+....+|..+++..+.... ..++|+||-+.+++..+.+.+.|.+.+++.
T Consensus 386 ~--l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~-------~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 386 G--LDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERH-------EKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred C--CceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHH-------hcCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 2 2223333333333334444455566778888887777665 456779999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC---CC--------cEEEEccCCCChhHHHhhcccCCCCCC
Q 013962 270 VALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM---GV--------AHVVNLDLPKTVEDYVHRIGRTGRGGS 338 (433)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip---~~--------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 338 (433)
.++++.-...+-+.+.+.-+.|. |-|||+++++|.|+. +. -+||-.....|..--.|.+||+||+|.
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPGA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccHHHHHHHHhhcCCCCc--cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 99998877666666666555555 889999999999993 21 267778888888888899999999999
Q ss_pred ceeEEEEeccccHHHHH----HHHHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCCCccccccccCC
Q 013962 339 MGQATSFYTDRDMLLVA----QIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGATVATSKLSMMGP 404 (433)
Q Consensus 339 ~g~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 404 (433)
+|.+..+++..|..... .+...+.........+.......+..+++++..+......+..+..++.
T Consensus 535 pG~S~F~lSleD~L~r~F~~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQk~vE~~n~d~rk~ll~ydd 604 (822)
T COG0653 535 PGSSRFYLSLEDDLMRRFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRNFDIRKQLLEYDD 604 (822)
T ss_pred cchhhhhhhhHHHHHHHhcchhhHHHHHhhcCCccCccccHHHHHHHHHHHHHHHhcCCcHHhhHHHHhH
Confidence 99999999887754322 2333333332233345666777888899998888777766666665554
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=2.4e-19 Score=179.82 Aligned_cols=329 Identities=19% Similarity=0.209 Sum_probs=196.2
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH-HHHHHH
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKAL 85 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~~~ 85 (433)
.+|+-|.+....+. +++.+++.|+||+|||++|++|++... .+.+++|++||++|++|.. +.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 68999999665554 467799999999999999999987753 1678999999999999994 566665
Q ss_pred hccCCCceEEEEECCCCHH------H-----------------------------------------HHHH---------
Q 013962 86 SRSLDSFKTAIVVGGTNIA------E-----------------------------------------QRSE--------- 109 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~------~-----------------------------------------~~~~--------- 109 (433)
.+.+ ++.+..+.|+.+.- . .+..
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 5443 45565555543210 0 0000
Q ss_pred ---------------hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-----CH-------HH-----
Q 013962 110 ---------------LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-------PQ----- 157 (433)
Q Consensus 110 ---------------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-----~~-------~~----- 157 (433)
....++|+|+....|+..+.... .+...+++||||||++.+.. .. ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 02356799999998887765433 35678999999999864211 00 00
Q ss_pred --------------------------------------HHH-------H--------Hhh--------------------
Q 013962 158 --------------------------------------IRE-------V--------MQN-------------------- 164 (433)
Q Consensus 158 --------------------------------------~~~-------~--------~~~-------------------- 164 (433)
+.. + ...
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 000 0 000
Q ss_pred ----------------CCCCCcEEEEEeecc--hHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEE--EcCc------h
Q 013962 165 ----------------LPDKHQTLLFSATMP--VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE--KVSE------N 218 (433)
Q Consensus 165 ----------------~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~ 218 (433)
++....+|++|||+. +... . ...++-............ ......+. .++. .
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~-~~~lGl~~~~~~~~~~~~-~~~~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-L-ADLLGFEEYLFHKIEKDK-KQDQLVVVDQDMPLVTETSDE 630 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-H-HHHcCCCccceecCCCCh-HHccEEEeCCCCCCCCCCChH
Confidence 000135678888885 2222 2 222221111111101111 11111111 1121 1
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 013962 219 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 298 (433)
.....+...+.... ..+++++|+++|.+..+.+++.|......+ ...|... .+..++++|++++-.||++
T Consensus 631 ~~~~~~~~~i~~~~-------~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 631 VYAEEIAKRLEELK-------QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred HHHHHHHHHHHHHH-------hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEe
Confidence 12223333332211 123569999999999999999997654444 3334222 3566899999988889999
Q ss_pred ecccccCcccCC--CcEEEEccCCCC------------------------------hhHHHhhcccCCCCCCceeEEEEe
Q 013962 299 TDVASRGLDVMG--VAHVVNLDLPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 299 T~~~~~Gidip~--~~~Vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
|+.+.+|+|+|+ ...||+.+.|.. ...+.|.+||.-|...+.-+++++
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999984 556777776631 233579999999986544455555
Q ss_pred ccc--cHHHHHHHHHHhhh
Q 013962 347 TDR--DMLLVAQIKKAIVD 363 (433)
Q Consensus 347 ~~~--d~~~~~~~~~~~~~ 363 (433)
++. ....-+.+.+.+++
T Consensus 781 D~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 781 DRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCcccccHHHHHHHHhCCC
Confidence 543 23344555555554
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=5.3e-19 Score=180.68 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=86.5
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCC--ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCC--CcEEEEcc
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG--VAHVVNLD 318 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~--~~~Vi~~~ 318 (433)
+++||+++|.+..+.+++.|..... ....+.-+++...|..+++.|++++-.||++|..+.+|||+|+ +.+||+.+
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 4699999999999999999976432 1223333444467889999999988889999999999999997 57899888
Q ss_pred CCCC------------------------------hhHHHhhcccCCCCCCceeEEEEeccc--cHHHHHHHHHHhh
Q 013962 319 LPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAIV 362 (433)
Q Consensus 319 ~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--d~~~~~~~~~~~~ 362 (433)
.|.. ...+.|.+||.-|...+..+++++++. ....-+.+.+.++
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 7641 222469999999987655556666543 2333444555554
No 139
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.85 E-value=1.6e-19 Score=174.79 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=106.6
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCcccCCCcEEEEc
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
..++++|||+......+.+...|..+|+....+.|....++|+..+++|..+. ...|++|...+.|||+-+++.||+|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 45678999999999999999999999999999999999999999999999874 2567799999999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|..|++.--.|.-.|++|.|+...+.+|-...+....+.|.
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 99999999999999999999998888887766665555443
No 140
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.8e-19 Score=160.18 Aligned_cols=303 Identities=18% Similarity=0.243 Sum_probs=193.9
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE
Q 013962 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 94 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 94 (433)
++.+-+..+.+++.+++.+.||||||...-...+...... ...+....|.+.-+.+.+.+...-..-.-+..+
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~CTQprrvaamsva~RVadEMDv~lG~EV 123 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEV 123 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceeecCchHHHHHHHHHHHHHHhccccchhc
Confidence 3444455566778899999999999976555555554443 466788889999888888777654321112223
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc--CCCHHHHHHHHhhCCCCCcEE
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD--MGFEPQIREVMQNLPDKHQTL 172 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~--~~~~~~~~~~~~~~~~~~~~i 172 (433)
+....-.+.... ++-.-++|.+.|++..... ..+..+++||+||||.-.- ...-..++.++... +..++|
T Consensus 124 GysIrfEdC~~~------~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 124 GYSIRFEDCTSP------NTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred cccccccccCCh------hHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEE
Confidence 222222211111 1122356766666554443 3468899999999995221 10222344444444 588899
Q ss_pred EEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecc
Q 013962 173 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK 252 (433)
Q Consensus 173 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~ 252 (433)
.||||+. ......|+.++..+.+...+ .+..++..-...+...+.+..+.+...... .+-+|||....
T Consensus 196 vmSatl~---a~Kfq~yf~n~Pll~vpg~~----PvEi~Yt~e~erDylEaairtV~qih~~ee-----~GDilvFLtge 263 (699)
T KOG0925|consen 196 VMSATLD---AEKFQRYFGNAPLLAVPGTH----PVEIFYTPEPERDYLEAAIRTVLQIHMCEE-----PGDILVFLTGE 263 (699)
T ss_pred Eeecccc---hHHHHHHhCCCCeeecCCCC----ceEEEecCCCChhHHHHHHHHHHHHHhccC-----CCCEEEEecCH
Confidence 9999986 44556788777776665422 222233333344455555555554433221 23499999999
Q ss_pred ccHHHHHHHHHHC---------CCceeeecCCCCHHHHHHHHHHHhc---C--CCcEEEEecccccCcccCCCcEEEEcc
Q 013962 253 TRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRN---G--STNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 253 ~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---g--~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
++.+..++.+... .+++..+| +.+.+.+++-... | ..+|+|+|++++..+.++++.+||..+
T Consensus 264 eeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpG 339 (699)
T KOG0925|consen 264 EEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPG 339 (699)
T ss_pred HHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCc
Confidence 9999999888743 34666777 4444444432221 2 246999999999999999999999766
Q ss_pred C------------------CCChhHHHhhcccCCCCCCceeEEEEeccc
Q 013962 319 L------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDR 349 (433)
Q Consensus 319 ~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 349 (433)
. |-|..+-.||.||+||. .+|.|+.+|+..
T Consensus 340 f~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 340 FSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 4 34778889999999998 679999999754
No 141
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=5.8e-20 Score=166.27 Aligned_cols=331 Identities=14% Similarity=0.058 Sum_probs=217.8
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+-......+|.++++.+-+|+++++.-.|.+||++++.......+... +....+++.|+.+++....+.+.-.
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceEEE
Confidence 4445567889999999999999999999999999999988777766553 3667899999999887654333222
Q ss_pred hccCC---CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCC----CCCccEEEEcccchhccCCCHH--
Q 013962 86 SRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS----LSRVSFVILDEADRMLDMGFEP-- 156 (433)
Q Consensus 86 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~----~~~~~~vIiDE~h~~~~~~~~~-- 156 (433)
....+ +..+.. ..+............+.+++++.|+........+... +-...++++||+|.+... +..
T Consensus 355 ~~~I~~~K~A~V~~-~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~ 432 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEM-SDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALA 432 (1034)
T ss_pred EEehhhhhcceeec-ccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHH
Confidence 11111 122222 2233333344445567899999998876555443332 233578999999965532 222
Q ss_pred --HHHHHHhhC-----CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc---------hhh
Q 013962 157 --QIREVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE---------NEK 220 (433)
Q Consensus 157 --~~~~~~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 220 (433)
.++.+.... ..+.+++-.+||.....+-.-..+-.+...+......+ ..-.+.+.+-+. +.+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP--s~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP--SSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC--CccceEEEeCCCCCCcchhhhhhH
Confidence 223322222 24668898999987776655444433333332222222 222233333221 112
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC----C----CceeeecCCCCHHHHHHHHHHHhcCC
Q 013962 221 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----G----LHAVALHGGRNQSDRESALRDFRNGS 292 (433)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~g~ 292 (433)
+......+.+.. ..+-++|-||+++..|+.+....++. + -.+..|.|+...++|..+....-.|+
T Consensus 511 i~E~s~~~~~~i-------~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 511 VVEVSHLFAEMV-------QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred HHHHHHHHHHHH-------HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 222222222221 23345999999999998765554432 2 13567889999999999999988999
Q ss_pred CcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec--cccHHH
Q 013962 293 TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT--DRDMLL 353 (433)
Q Consensus 293 ~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~--~~d~~~ 353 (433)
..-+|+|++++-|||+...+.|++.++|.|...+.|..|||||..++..++++.. +.|...
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 9999999999999999999999999999999999999999999988766655543 444433
No 142
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.83 E-value=1.9e-19 Score=166.68 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=99.6
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCc-EEEEecccccCcccCCCcEEEEcc
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN-ILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
..++++|+|+........+.++|...++....+.|.....+|..++.+|+..++- .|++|.+.+-|||+..++.||+|+
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYd 1121 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYD 1121 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEec
Confidence 5568899999999999999999999999999999999999999999999987654 567999999999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEecc
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
..|++..-.|...||+|.|+...+.+|-..
T Consensus 1122 SDWNPT~D~QAMDRAHRLGQTrdvtvyrl~ 1151 (1185)
T KOG0388|consen 1122 SDWNPTADQQAMDRAHRLGQTRDVTVYRLI 1151 (1185)
T ss_pred CCCCcchhhHHHHHHHhccCccceeeeeec
Confidence 999999999999999999998776666543
No 143
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=4.9e-20 Score=176.77 Aligned_cols=335 Identities=16% Similarity=0.169 Sum_probs=214.2
Q ss_pred CCCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
-++.+||...+.++.+ +-+.|++..||.|||.. .+.++.++++... ..+..||+||+..|.+ |..+|..|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~----~~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ----MQGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc----cCCCeEEeccccccCC-chhhcccc
Confidence 3789999999988873 23689999999999965 4566666666432 2455699999999988 99999887
Q ss_pred hccCCCceEEEEECCCCHH--HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 86 SRSLDSFKTAIVVGGTNIA--EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
. +.+....+.|..... .......++++|+++|++.+... .....--++.++||||.|+|.+. ...+...+.
T Consensus 467 a---PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd--k~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~ 539 (1157)
T KOG0386|consen 467 A---PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD--KALLSKISWKYMIIDEGHRMKNA--ICKLTDTLN 539 (1157)
T ss_pred c---cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC--HHHHhccCCcceeecccccccch--hhHHHHHhh
Confidence 6 456666666665422 11223347899999999988541 10111234789999999999874 233333333
Q ss_pred hCCCCCcEEEEEeecchH----HHHH--------------HHHhcCCCeEEE----------------------------
Q 013962 164 NLPDKHQTLLFSATMPVE----IEAL--------------AQEYLTDPVQVK---------------------------- 197 (433)
Q Consensus 164 ~~~~~~~~i~~SAT~~~~----~~~~--------------~~~~~~~~~~~~---------------------------- 197 (433)
..-...+-+++|+||.-+ ...+ ...|+..|..-.
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 211233457788887100 0000 000000000000
Q ss_pred ----------------------------------------ecC-----cCCC----------CCCceEEE----EEcCch
Q 013962 198 ----------------------------------------VGK-----VSSP----------TANVIQIL----EKVSEN 218 (433)
Q Consensus 198 ----------------------------------------~~~-----~~~~----------~~~~~~~~----~~~~~~ 218 (433)
... .... ..+....+ ..+...
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~ 699 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLH 699 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccc
Confidence 000 0000 00000000 000000
Q ss_pred hhHHHHHHHHHHHHHhh---hhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCC--
Q 013962 219 EKVDRLLALLVEEAFLA---EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST-- 293 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-- 293 (433)
.....++..-.+..... ..-...++++|.||........+..+|.-.++....+.|.+..++|...++.|..-..
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 11111111111110000 0112446789999999999999999999999999999999999999999999987433
Q ss_pred -cEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 294 -NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 294 -~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
..|++|.+.+.|+|+..++.||+||..|++....|+.-|++|.|+...+-++....-....+.+
T Consensus 780 f~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~i 844 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKI 844 (1157)
T ss_pred eeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHH
Confidence 4677999999999999999999999999999999999999999999888888766554444444
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=3.9e-17 Score=156.86 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=75.8
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC----CCcEEEEecccccCccc--------CC
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG----STNILVATDVASRGLDV--------MG 310 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vlv~T~~~~~Gidi--------p~ 310 (433)
+.++|.+.+....+.+++.|...--....+.|..+ .+..++++|++. .-.||++|+.+.+|+|+ |+
T Consensus 471 G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G 548 (636)
T TIGR03117 471 GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKD 548 (636)
T ss_pred CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCC
Confidence 45999999999999999999664223344455332 456678888874 67899999999999999 33
Q ss_pred --CcEEEEccCCCC-------------------------hhHHHhhcccCCCCCCc--eeEEEEeccc
Q 013962 311 --VAHVVNLDLPKT-------------------------VEDYVHRIGRTGRGGSM--GQATSFYTDR 349 (433)
Q Consensus 311 --~~~Vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 349 (433)
+.+||+...|.. ...+.|-+||.-|...+ .-++.++.+.
T Consensus 549 ~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 549 NLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 889999877741 22346899999998655 4455555444
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=3.4e-19 Score=160.98 Aligned_cols=268 Identities=19% Similarity=0.204 Sum_probs=176.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+-++-+|||.||||.-++ +.+.+ .+..++.-|.+.|+.++++++... ++.+..++|.......
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~--------aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVL 254 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh--------hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecC
Confidence 346779999999997654 44443 556799999999999999999885 6777788887643321
Q ss_pred HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc-hHHHHH
Q 013962 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP-VEIEAL 185 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~-~~~~~~ 185 (433)
.. ...+..+-+|.|++.- -..+++.||||.+.|.+...+..|...+.-+...- |-+.+-|. -.+...
T Consensus 255 ~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE--iHLCGepsvldlV~~ 322 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE--IHLCGEPSVLDLVRK 322 (700)
T ss_pred CC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh--hhccCCchHHHHHHH
Confidence 11 1235677788776531 23488999999999998877776666554443221 22222221 111222
Q ss_pred HHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC
Q 013962 186 AQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE 265 (433)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 265 (433)
+-...++.+.+...... .+-.-.+.....+. .-.++. ++| |-++.....+...+.+.
T Consensus 323 i~k~TGd~vev~~YeRl-------------~pL~v~~~~~~sl~--------nlk~GD-CvV-~FSkk~I~~~k~kIE~~ 379 (700)
T KOG0953|consen 323 ILKMTGDDVEVREYERL-------------SPLVVEETALGSLS--------NLKPGD-CVV-AFSKKDIFTVKKKIEKA 379 (700)
T ss_pred HHhhcCCeeEEEeeccc-------------Ccceehhhhhhhhc--------cCCCCC-eEE-EeehhhHHHHHHHHHHh
Confidence 22223333333221111 11000001111111 112222 333 44777888899999888
Q ss_pred CCc-eeeecCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCcccCCCcEEEEccCC---------CChhHHHhhcccC
Q 013962 266 GLH-AVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDLP---------KTVEDYVHRIGRT 333 (433)
Q Consensus 266 ~~~-~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~---------~s~~~~~Q~~GR~ 333 (433)
+.. +.+++|.+|++.|.+....|.+ ++++|||||+++++|+|+ +++-||+++.. .+..+..|.+|||
T Consensus 380 g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRA 458 (700)
T KOG0953|consen 380 GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRA 458 (700)
T ss_pred cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcc
Confidence 766 9999999999999999999998 899999999999999999 68888887764 3678899999999
Q ss_pred CCCCC---ceeEEEEec
Q 013962 334 GRGGS---MGQATSFYT 347 (433)
Q Consensus 334 ~R~g~---~g~~~~~~~ 347 (433)
||.|. .|.+.++..
T Consensus 459 GRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 459 GRFGSKYPQGEVTTLHS 475 (700)
T ss_pred cccccCCcCceEEEeeH
Confidence 99865 366666554
No 146
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.81 E-value=2e-18 Score=138.49 Aligned_cols=144 Identities=44% Similarity=0.636 Sum_probs=111.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+++++.+|||+|||.+++..+....... ..++++|++|+..++.|+.+.+...... ...+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHH
Confidence 4689999999999998877777765442 2678999999999999999999987653 5667777777666655
Q ss_pred HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
........+|+++|++.+.............+++||+||+|.+....................+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 555567899999999999888776554556789999999999887654443223344456678899999997
No 147
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=149.31 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=90.0
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC-CCcEEE-EecccccCcccCCCcEEEEccCC
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG-STNILV-ATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
-+.|||.+.......+.=.|.+.|+.++.+.|+|++..|...++.|++. .++|++ +-.+.+..+|+..+.+|+.+|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4578888888888888888999999999999999999999999999986 566655 44888999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCcee--EEEEe
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQ--ATSFY 346 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~--~~~~~ 346 (433)
|++..-.|...|.+|.|+... ++.++
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEee
Confidence 999999999999999998544 44444
No 148
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=2.1e-18 Score=159.85 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=97.2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc--CCCcEEE-EecccccCcccCCCcEEEEc
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILV-ATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gidip~~~~Vi~~ 317 (433)
...+++|...-......+...|+..|.....+||....++|+.+++.|.. |..+|++ +-.+.+.|+|+-+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 33557777666666788889999999999999999999999999999975 4456665 44889999999999999999
Q ss_pred cCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 318 DLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 318 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|..|++..-.|...|..|.|++..++++-..-......+++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~ 865 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVK 865 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHH
Confidence 99999999999999999999998888876554444444443
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.81 E-value=8.6e-20 Score=153.32 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~-------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+.... .+++|++|+..|.+|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------RKVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------cceeEecCHHHHHHHHHHHHH
Confidence 589999999999984 57899999999999998876555552 279999999999999999997
Q ss_pred HHhccCCCceEE----------EEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC-----------CCCCCccEEE
Q 013962 84 ALSRSLDSFKTA----------IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-----------TSLSRVSFVI 142 (433)
Q Consensus 84 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-----------~~~~~~~~vI 142 (433)
.+.......... ...................+++++|.+.+........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111000 0011111112223334578899999999977654321 1223578999
Q ss_pred EcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 143 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 143 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
+||||++.... .+..++. .+...+|+|||||.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999986532 1455555 45667999999995
No 150
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1.1e-18 Score=137.80 Aligned_cols=105 Identities=42% Similarity=0.680 Sum_probs=99.5
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
.++++||||++...++.+.+.|...+..+..+|++++..+|..+++.|+++...+|++|+++++|+|+|.+++||+++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP 106 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCC
Confidence 45679999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEE
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSF 345 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~ 345 (433)
++...+.|++||++|.|+.|.++++
T Consensus 107 ~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 107 WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999988887653
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.80 E-value=1.9e-17 Score=165.64 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=62.9
Q ss_pred ccCCCCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
..+...++|+.|.+.+..+. .++.+++.||||+|||+.|+.|++...... +..+++.++|+.|.+|..+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~ 81 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLE 81 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHH
Confidence 45677799999999997665 445599999999999999999999997664 6889999999999999987
Q ss_pred HHHHH
Q 013962 81 EVKAL 85 (433)
Q Consensus 81 ~~~~~ 85 (433)
+...+
T Consensus 82 ~~~~~ 86 (654)
T COG1199 82 EDLPI 86 (654)
T ss_pred hhcch
Confidence 76654
No 152
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.80 E-value=2.8e-19 Score=126.75 Aligned_cols=78 Identities=36% Similarity=0.703 Sum_probs=75.5
Q ss_pred HHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCC
Q 013962 260 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG 337 (433)
Q Consensus 260 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 337 (433)
+.|+..++++..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.78 E-value=5.1e-17 Score=158.14 Aligned_cols=282 Identities=15% Similarity=0.114 Sum_probs=171.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH----
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE---- 105 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 105 (433)
+..+.+|||||.+|+..+...+.. |+++||++|...|..|+.+.++..+. +-.+..++.+.+..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHH
Confidence 444446999999997766665554 88899999999999999999998873 245777887776553
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-----CHHHHHHHHhhCCCCCcEEEEEeecch
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPV 180 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT~~~ 180 (433)
+.....+..+|+|+|...++ ..+.++++||+||-|.-.... +...-..++..-..+..+|+.||||+.
T Consensus 233 w~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 33444567899999987775 567889999999999654221 122222223333457789999999987
Q ss_pred HHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEE---cCch--h----hHHHHHHHHHHHHHhhhhcCCCCCeEEEEEec
Q 013962 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK---VSEN--E----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 251 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~ 251 (433)
+.......-................+.+.-.-.. ...+ . -...+...+.+.. ..+ ++|||.|.
T Consensus 306 es~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L-------~~g-qvll~lnR 377 (665)
T PRK14873 306 EAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDAL-------EHG-PVLVQVPR 377 (665)
T ss_pred HHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHH-------hcC-cEEEEecC
Confidence 7655443221110000000001111111111100 0000 0 0112333333322 223 58999888
Q ss_pred cccH-----------------------------------------------------------HHHHHHHHHCC--Ccee
Q 013962 252 KTRC-----------------------------------------------------------DEVSEALVAEG--LHAV 270 (433)
Q Consensus 252 ~~~~-----------------------------------------------------------~~l~~~L~~~~--~~~~ 270 (433)
+-.+ +++.+.|.+.- .++.
T Consensus 378 rGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~ 457 (665)
T PRK14873 378 RGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV 457 (665)
T ss_pred CCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE
Confidence 6543 45555554442 2233
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCcEEEEec----ccccCcccCCCcEEEEccCCC------------ChhHHHhhcccCC
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTNILVATD----VASRGLDVMGVAHVVNLDLPK------------TVEDYVHRIGRTG 334 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~----~~~~Gidip~~~~Vi~~~~~~------------s~~~~~Q~~GR~~ 334 (433)
.+. +..+++.|. ++.+|||+|+ ++. +++..|+..|... ....+.|..||+|
T Consensus 458 r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagrag 524 (665)
T PRK14873 458 TSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVR 524 (665)
T ss_pred EEC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhc
Confidence 222 224778886 5899999999 555 3567776655431 3455689999999
Q ss_pred CCCCceeEEEEecccc
Q 013962 335 RGGSMGQATSFYTDRD 350 (433)
Q Consensus 335 R~g~~g~~~~~~~~~d 350 (433)
|.+.+|.+++...+..
T Consensus 525 r~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 525 PRADGGQVVVVAESSL 540 (665)
T ss_pred CCCCCCEEEEEeCCCC
Confidence 9988899998864443
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.78 E-value=4.2e-16 Score=154.64 Aligned_cols=116 Identities=16% Similarity=0.274 Sum_probs=79.8
Q ss_pred eEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc----CCCcEEEEecccccCcccCC--CcEEEEc
Q 013962 244 LTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN----GSTNILVATDVASRGLDVMG--VAHVVNL 317 (433)
Q Consensus 244 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gidip~--~~~Vi~~ 317 (433)
.++||++|....+.+++.|..........++. ..+..+++.|++ ++-.||++|..+.+|||+|+ +++||+.
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 38999999999999999987532222344443 356777766764 66779999999999999997 7899998
Q ss_pred cCCCC------------------------------hhHHHhhcccCCCCCCceeEEEEeccc--cHHHHHHHHHHhh
Q 013962 318 DLPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTDR--DMLLVAQIKKAIV 362 (433)
Q Consensus 318 ~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~--d~~~~~~~~~~~~ 362 (433)
+.|.. ...+.|.+||.-|...+.-+++++++. ....-+.+.+.++
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 87741 112369999999986654455555443 2233344445444
No 155
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=5.5e-16 Score=152.24 Aligned_cols=318 Identities=17% Similarity=0.228 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 11 RPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
...|.|.+.++.+.+. +++++.+|+|||||.++-++++. . ....+++++.|..+.+..++..+.+-+...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P------DTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C------ccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3477888888888854 57999999999999998776665 1 237889999999999999999988887777
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHH------HHHHHHh
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP------QIREVMQ 163 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~------~~~~~~~ 163 (433)
.+..+..++|....... +....+|+|+||+++... . ....+++.|.||.|.+.+. ++. .++.+..
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHH
Confidence 88999999998875533 334569999999998544 2 4566899999999987743 222 1555666
Q ss_pred hCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhh-hcCCCC
Q 013962 164 NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAE-KSCHPF 242 (433)
Q Consensus 164 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 242 (433)
.+-+..+++++|..+.+.-.. .+......+.......+.+...+ +..++. .........+.+..+... +-....
T Consensus 1285 q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~-i~~~~~-~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIH-IQSVDI-SHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEE-EEEecc-chhHHHHHHhhhhHHHHHHHHhcCC
Confidence 666788899999887533211 11112222222222222222222 122221 222222222222222221 111344
Q ss_pred CeEEEEEeccccHHHHHHHHHHC----------------------CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 013962 243 PLTIVFVERKTRCDEVSEALVAE----------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 300 (433)
.+.+||+++++.|..++..|... .+++.+-|.+++..+...+-..|..|.++|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 66999999999987766554221 23344448899999999999999999999999886
Q ss_pred ccccCcccCCCcEEEEcc-----------CCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHH
Q 013962 301 VASRGLDVMGVAHVVNLD-----------LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQ 356 (433)
Q Consensus 301 ~~~~Gidip~~~~Vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~ 356 (433)
- ..|+-.. .+.||.++ .+.+.....|+.|++.|. |.|++++...+....+.
T Consensus 1440 ~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1440 D-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred c-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH
Confidence 5 6777664 34444332 245688899999999994 78999988777665443
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.9e-15 Score=149.04 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=64.7
Q ss_pred cCCCCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+.|..+||.|.+.+..+. .++++++.+|||+|||++.+.+++.+..+.+ ...++++.+.|.+-..|..++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHH
Confidence 5788888999999987766 6788999999999999999999999876532 246899999999999999999
Q ss_pred HHHH
Q 013962 82 VKAL 85 (433)
Q Consensus 82 ~~~~ 85 (433)
+++.
T Consensus 80 lk~~ 83 (705)
T TIGR00604 80 LRKL 83 (705)
T ss_pred HHhh
Confidence 9985
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.68 E-value=2.2e-16 Score=113.40 Aligned_cols=81 Identities=49% Similarity=0.811 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCC
Q 013962 257 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRG 336 (433)
Q Consensus 257 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 336 (433)
.+.+.|...++.+..+||.+++.+|..+++.|.++...|||+|+++++|+|+|.++.||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 013962 337 G 337 (433)
Q Consensus 337 g 337 (433)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 158
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.65 E-value=8.8e-15 Score=140.04 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=95.7
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----------------------CCceeeecCCCCHHHHHHHHHHHhcC-C---CcE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----------------------GLHAVALHGGRNQSDRESALRDFRNG-S---TNI 295 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g-~---~~v 295 (433)
+.+.|||..+......+..+|... |.....+.|.....+|....+.|.+- + .-.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 466999999999999888888642 34567788999999999999999863 2 238
Q ss_pred EEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHH
Q 013962 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL 353 (433)
Q Consensus 296 lv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~ 353 (433)
||+|.+.+-|||+-.++-||+||..|+|..-.|.+=|+-|.|+...||+|-.......
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccH
Confidence 9999999999999999999999999999999999999999999999998875544333
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.63 E-value=2e-14 Score=149.90 Aligned_cols=331 Identities=18% Similarity=0.183 Sum_probs=207.9
Q ss_pred CCCCcHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~-----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
...+++||.+.++.+. .+.+.+++.++|.|||+..+..+.. ...... ...+.++++||+ ++..+|.+++.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK---VYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc---CCCCCeEEEecH-HHHHHHHHHHh
Confidence 4568999999998866 2567899999999999876554444 222211 114578999995 66777999998
Q ss_pred HHhccCCCce-EEEEECCCC-----HHHHHHHhhCC----CcEEEeccHHHHHHH-HcCCCCCCCccEEEEcccchhccC
Q 013962 84 ALSRSLDSFK-TAIVVGGTN-----IAEQRSELRGG----VSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~----~~Ivv~T~~~l~~~~-~~~~~~~~~~~~vIiDE~h~~~~~ 152 (433)
++... +. +....|... ........... .+++++|++.+.... ......-..++.+|+||+|.+.+.
T Consensus 411 k~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 411 KFAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 87654 44 666666664 22222222222 789999999987632 111223345889999999997765
Q ss_pred CCHHHHHHHHhhCCCCCcEEEEEeecch-HHHH---HHHHhcCCCeEEE-----------------ec------------
Q 013962 153 GFEPQIREVMQNLPDKHQTLLFSATMPV-EIEA---LAQEYLTDPVQVK-----------------VG------------ 199 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~---~~~~~~~~~~~~~-----------------~~------------ 199 (433)
. ......+. .++... .+.+|+||-. .+.+ ....+ ..|.... ..
T Consensus 488 ~-s~~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f-~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (866)
T COG0553 488 Q-SSEGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEF-LNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIE 563 (866)
T ss_pred h-hHHHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHH-hCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHH
Confidence 3 22333333 343333 3777888711 1100 00000 0000000 00
Q ss_pred ---------------Cc---C-CCCCCceEEE------------------------------------------------
Q 013962 200 ---------------KV---S-SPTANVIQIL------------------------------------------------ 212 (433)
Q Consensus 200 ---------------~~---~-~~~~~~~~~~------------------------------------------------ 212 (433)
.. . ..++.....+
T Consensus 564 ~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 643 (866)
T COG0553 564 LLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILA 643 (866)
T ss_pred HHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Confidence 00 0 0000000000
Q ss_pred ------------EEcCch------------------------------hhHHHHHHHHHHHHHhhhhcCCCCC--eEEEE
Q 013962 213 ------------EKVSEN------------------------------EKVDRLLALLVEEAFLAEKSCHPFP--LTIVF 248 (433)
Q Consensus 213 ------------~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~lvf 248 (433)
..+... .+...+...+. ......+. ++++|
T Consensus 644 ~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~------~~~~~~~~~~kvlif 717 (866)
T COG0553 644 LLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLL------DKLLEEGHYHKVLIF 717 (866)
T ss_pred HHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHH------HHHHhhcccccEEEE
Confidence 000000 11111111110 01112233 79999
Q ss_pred EeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcC--CCcEEEEecccccCcccCCCcEEEEccCCCChhHH
Q 013962 249 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG--STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDY 326 (433)
Q Consensus 249 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~ 326 (433)
++.......+...|...++....++|.++..+|...++.|.++ ..-+++++.+.+.|+|+..+++||++|+.|++...
T Consensus 718 sq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~ 797 (866)
T COG0553 718 SQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVE 797 (866)
T ss_pred eCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHH
Confidence 9999999999999999998899999999999999999999986 33456677899999999999999999999999999
Q ss_pred HhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 327 VHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 327 ~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
.|...|++|.|+...+.++-........+.+
T Consensus 798 ~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i 828 (866)
T COG0553 798 LQAIDRAHRIGQKRPVKVYRLITRGTIEEKI 828 (866)
T ss_pred HHHHHHHHHhcCcceeEEEEeecCCcHHHHH
Confidence 9999999999998888777665544433333
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.63 E-value=4e-14 Score=139.82 Aligned_cols=316 Identities=20% Similarity=0.161 Sum_probs=177.9
Q ss_pred CcHHHHHHHHHhhc----C--Cc--EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALS----G--RD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~----~--~~--~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
-+.+|-+|+..+.+ . .. ++--|.||+|||++ =.-++..+... ..|.+..|.--.+.|.-|+-++++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~-----~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD-----KQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC-----CCCceEEEEccccceeccchHHHH
Confidence 45689999988874 1 11 45578999999975 34455444432 236678888888888888877777
Q ss_pred HHhccCCCceEEEEECCCCHHHHHH-------------------------------------------Hhh--------C
Q 013962 84 ALSRSLDSFKTAIVVGGTNIAEQRS-------------------------------------------ELR--------G 112 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~--------~ 112 (433)
+-.+- .+-..+++.|+....+..+ .+. =
T Consensus 483 ~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 483 TRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 65532 3344444444432111110 000 1
Q ss_pred CCcEEEeccHHHHHHHHcCC--C-CCC----CccEEEEcccchhccCCCHHHHHHHHhh-CCCCCcEEEEEeecchHHHH
Q 013962 113 GVSIVVATPGRFLDHLQQGN--T-SLS----RVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIEA 184 (433)
Q Consensus 113 ~~~Ivv~T~~~l~~~~~~~~--~-~~~----~~~~vIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~ 184 (433)
...++|+|++.++....... . .+. .-+.|||||+|.+-... ...+..++.- -.-+.++++||||+|+....
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 24699999999976653211 1 111 13579999999754322 1222333221 12356799999999987665
Q ss_pred HHHHh-----------cCCC---eEE---EecCcCCC----------------------------CCCceEEEEEcCch-
Q 013962 185 LAQEY-----------LTDP---VQV---KVGKVSSP----------------------------TANVIQILEKVSEN- 218 (433)
Q Consensus 185 ~~~~~-----------~~~~---~~~---~~~~~~~~----------------------------~~~~~~~~~~~~~~- 218 (433)
.+..- .+.| ..+ -+...... +..-.-.+..++..
T Consensus 641 ~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~ 720 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLP 720 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcc
Confidence 43321 1111 111 00000000 00000111111111
Q ss_pred ----hhHHHHHHHHHHHHHhhhh----cCC-CCC---eEEEEEeccccHHHHHHHHHHC------CCceeeecCCCCHHH
Q 013962 219 ----EKVDRLLALLVEEAFLAEK----SCH-PFP---LTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQSD 280 (433)
Q Consensus 219 ----~~~~~~~~~~~~~~~~~~~----~~~-~~~---~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~ 280 (433)
.....+...+.+....... ... .++ -.+|-+++++.+-.++..|... .+.+.+||+..+...
T Consensus 721 ~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~ 800 (1110)
T TIGR02562 721 RENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLL 800 (1110)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHH
Confidence 1222222222222211111 111 111 2678888888888888877654 345788999988777
Q ss_pred HHHHHHHH----------------------hc----CCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCC
Q 013962 281 RESALRDF----------------------RN----GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTG 334 (433)
Q Consensus 281 r~~~~~~f----------------------~~----g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~ 334 (433)
|..+.+.. .+ +...|+|+|++++.|+|+ +++.+|.- +.+....+|++||+.
T Consensus 801 Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~ 877 (1110)
T TIGR02562 801 RSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVN 877 (1110)
T ss_pred HHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccc
Confidence 77665443 11 356799999999999998 46666544 455899999999999
Q ss_pred CCCC
Q 013962 335 RGGS 338 (433)
Q Consensus 335 R~g~ 338 (433)
|.|.
T Consensus 878 R~~~ 881 (1110)
T TIGR02562 878 RHRL 881 (1110)
T ss_pred cccc
Confidence 9865
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.59 E-value=1.9e-12 Score=118.59 Aligned_cols=298 Identities=19% Similarity=0.243 Sum_probs=206.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCC----------Cce--------EEEE-ECCCCHHHHHHHh-----------
Q 013962 61 DGPLALVLAPTRELAQQIEKEVKALSRSLD----------SFK--------TAIV-VGGTNIAEQRSEL----------- 110 (433)
Q Consensus 61 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~----------~~~--------~~~~-~~~~~~~~~~~~~----------- 110 (433)
..++||||+|++..|-++.+.+.++..... .+. .... .....+.+.....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 468999999999999999998887764310 010 0000 0011111111111
Q ss_pred -------------hCCCcEEEeccHHHHHHHHc------CCCCCCCccEEEEcccchhc--cCCCHHHHHHHHhhCCC--
Q 013962 111 -------------RGGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRML--DMGFEPQIREVMQNLPD-- 167 (433)
Q Consensus 111 -------------~~~~~Ivv~T~~~l~~~~~~------~~~~~~~~~~vIiDE~h~~~--~~~~~~~~~~~~~~~~~-- 167 (433)
..+.||+|++|=-|...+.. ....++++.++|+|.+|.+. +|.+...+...+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 24678999999888766653 23457889999999999776 33333333333333332
Q ss_pred -------------------CCcEEEEEeecchHHHHHHHHhcCCCe-EEEecC-------cCCCCCCceEEEEEcCc---
Q 013962 168 -------------------KHQTLLFSATMPVEIEALAQEYLTDPV-QVKVGK-------VSSPTANVIQILEKVSE--- 217 (433)
Q Consensus 168 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~--- 217 (433)
-.|.|++|+...+.+..+....+.+.. .+.... .......+.|.+..++.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 249999999999999988888655432 222111 12334556666666543
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEE
Q 013962 218 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 297 (433)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 297 (433)
....+.......+..............+|||+|+.-+--.+.+.|++.++....++...+..+....-..|..|+..+|+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 23344445544444333333134456699999999999999999999999999999999999999999999999999999
Q ss_pred Eecc--cccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCC------ceeEEEEeccccHHHHHHHH
Q 013962 298 ATDV--ASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS------MGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 298 ~T~~--~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~d~~~~~~~~ 358 (433)
.|.- .-+-..+.+++.||+|++|..+.-|...++-.+.... ...|.++++..|...+++|.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9954 4467888999999999999999998887765555432 57899999999988877763
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.59 E-value=1e-12 Score=134.14 Aligned_cols=294 Identities=17% Similarity=0.198 Sum_probs=164.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+..+|+.-||||||++... +...+.+. ...+.++|||.++.|-.|+.+++..+..... . .. ...+....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~--~~-~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--N--DP-KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--h--cc-cccCHHHH
Confidence 4599999999999998644 44444443 2488999999999999999999999864321 1 11 55566666
Q ss_pred HHHhhCC-CcEEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecchHHH
Q 013962 107 RSELRGG-VSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183 (433)
Q Consensus 107 ~~~~~~~-~~Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 183 (433)
.+.+... ..|+|||.++|-....... ..-.+--+||+||||+.-. +..-..+...++ +...+++|+||...-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~~-~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKALK-KAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHhc-cceEEEeeCCcccccc
Confidence 6666644 5899999999977765531 1122234677799998542 333333344444 4779999999953322
Q ss_pred HH-HHHhcCCCeEEEecCcCCCCCCceEEEEEcC------------chh----hHHHH----H-----------------
Q 013962 184 AL-AQEYLTDPVQVKVGKVSSPTANVIQILEKVS------------ENE----KVDRL----L----------------- 225 (433)
Q Consensus 184 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~----~----------------- 225 (433)
.. ....++................+...+.... ... ..... .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22 1222333222222222111111111111110 000 00000 0
Q ss_pred ---HHHHHHHHhh-hhcCCCCCeEEEEEeccccHHHHHHHHHHCCC---------c-eeee-------------cCCCCH
Q 013962 226 ---ALLVEEAFLA-EKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------H-AVAL-------------HGGRNQ 278 (433)
Q Consensus 226 ---~~~~~~~~~~-~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~---------~-~~~~-------------~~~~~~ 278 (433)
..+....... ........++++.++++..+..+.+....... . +..+ |.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 0000001111 11234456677777777744444433222100 0 0000 111 12
Q ss_pred HHHHHHHHHH--hcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCC
Q 013962 279 SDRESALRDF--RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG 337 (433)
Q Consensus 279 ~~r~~~~~~f--~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 337 (433)
..+.....+| .....++||.++++=+|+|.|.++++..- -|.-....+|.+-|+.|.-
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvD-K~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVD-KPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEec-cccccchHHHHHHHhccCC
Confidence 2233344443 34678999999999999999977766554 4566779999999999973
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.56 E-value=3.1e-13 Score=130.25 Aligned_cols=289 Identities=15% Similarity=0.159 Sum_probs=178.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 107 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
-.+|.+|+|+|||.. +...+...+.. .+.++|+++.+++|+.+....++...- .++....-..+...
T Consensus 51 V~vVRSpMGTGKTta-Li~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i---- 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTA-LIRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYII---- 117 (824)
T ss_pred eEEEECCCCCCcHHH-HHHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeeccccccc----
Confidence 478999999999964 45555554332 278899999999999999999886421 12222111111110
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHH-------HHHHHHhhCCCCCcEEEEEeecch
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP-------QIREVMQNLPDKHQTLLFSATMPV 180 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~-------~~~~~~~~~~~~~~~i~~SAT~~~ 180 (433)
-...++-++++.++|.+.. ...+.++++||+||+-..+..-+.+ .+..+...+.....+|++-|++..
T Consensus 118 --~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 118 --DGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred --cccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 0123577888888886543 2345679999999998766542222 223334445667789999999999
Q ss_pred HHHHHHHHhcCC-CeEEEecCcCCCCCCceEEE--EEcCch--------------------------------hhHHHHH
Q 013962 181 EIEALAQEYLTD-PVQVKVGKVSSPTANVIQIL--EKVSEN--------------------------------EKVDRLL 225 (433)
Q Consensus 181 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------------~~~~~~~ 225 (433)
...+++....++ +..+...........-.... ..+... .......
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 888888876543 23333222221111111100 000000 0001122
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 013962 226 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305 (433)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 305 (433)
..+.... ..+.++-||++|...++.+++.......++..+++..+..+. +.| ++++|++-|+++..|
T Consensus 273 ~~L~~~L-------~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG 339 (824)
T PF02399_consen 273 SELLARL-------NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVG 339 (824)
T ss_pred HHHHHHH-------hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEE
Confidence 2222222 334568899999999999999999888899999887665532 222 478899999999999
Q ss_pred cccCC--CcEEEEccCC----CChhHHHhhcccCCCCCCceeEEEEecc
Q 013962 306 LDVMG--VAHVVNLDLP----KTVEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 306 idip~--~~~Vi~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
+++-. .+-++-|=.| .+..+..|++||+..... ...++++..
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~d~ 387 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYIDA 387 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEEec
Confidence 99954 3334443112 234568999999977643 566666654
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.55 E-value=4.2e-14 Score=107.63 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=83.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
++-.++-..+|+|||.-.+.-++...... +.++|||.||+.++..+.+.++.. .+.+. ......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~--t~~~~~-- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFH--TNARMR-- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS-----SEEEE--STTSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC-----CcccC--ceeeec--
Confidence 44578999999999987777777766664 889999999999999888777642 22222 111111
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHHHHHhhCCCCCcEEEEEeecchHH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEI 182 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 182 (433)
...++.-|-++|+..+.+.+.+ .....++++||+||||..-..+ ....+..... .....+|+||||||...
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred ---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 1235568999999999887766 5557889999999999532111 1112222211 23467999999998654
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.51 E-value=1.5e-13 Score=124.79 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHHHhhc-------------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 15 IQAQAMPVALS-------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 15 ~Q~~~i~~~~~-------------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
||.+++..++. .+.++++.++|+|||++++..+. .+..... ......+||+||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 68888887742 34699999999999987755444 3333211 1112359999998 888999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHH-----HHHHcCCCCCCCccEEEEcccchhccCCCHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-----DHLQQGNTSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~-----~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
+.+++... .+.+..+.+...............+++++|++.+. ..... ....++++||+||+|.+.+. ..
T Consensus 77 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~--l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 77 IEKWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED--LKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH--HHTSEEEEEEETTGGGGTTT--TS
T ss_pred hccccccc-cccccccccccccccccccccccceeeeccccccccccccccccc--cccccceeEEEecccccccc--cc
Confidence 99998532 45666665555122222233457899999999998 11110 11133899999999998653 33
Q ss_pred HHHHHHhhCCCCCcEEEEEeecchH
Q 013962 157 QIREVMQNLPDKHQTLLFSATMPVE 181 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~SAT~~~~ 181 (433)
.....+..+. ....+++||||..+
T Consensus 152 ~~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 152 KRYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred cccccccccc-cceEEeeccccccc
Confidence 3444444465 66678999998543
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.47 E-value=1.6e-12 Score=112.10 Aligned_cols=127 Identities=26% Similarity=0.379 Sum_probs=99.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|.-+.-.+..|+ |+.+.||-|||+++.++++...+. |..|-|++.+..|+..-++++..++..+
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~L- 145 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFL- 145 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHh-
Confidence 67777887776665544 999999999999999998888776 8889999999999999999999999987
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCCC------CCCCccEEEEcccchhc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNT------SLSRVSFVILDEADRML 150 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~ 150 (433)
++.++.+..+.........+. ++|+++|...| +++++.+.. ..+.+.++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 899999999988766555544 68999999988 556654321 24678999999999865
No 167
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.36 E-value=9.2e-10 Score=109.82 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=56.4
Q ss_pred CCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCC--c-------e-eEEEEeccccHHHHHHHHHHh
Q 013962 292 STNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS--M-------G-QATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 292 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~--~-------g-~~~~~~~~~d~~~~~~~~~~~ 361 (433)
.++.|++.+++.+|||.|++-.++.+....|...-.|.+||+.|..- . . .-.++.......++..|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999521 1 1 123334555667777777766
Q ss_pred hh
Q 013962 362 VD 363 (433)
Q Consensus 362 ~~ 363 (433)
.+
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 54
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=110.25 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=100.9
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCC------------------ceeeecCCCCHHHHHHHHHHHhcC--CC-cEEEE
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGL------------------HAVALHGGRNQSDRESALRDFRNG--ST-NILVA 298 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~g--~~-~vlv~ 298 (433)
.-+.++|||..+......+.+.|.+..+ ....+.|..+..+|+.++++|.+- -. -++++
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 3457799999999999999999877532 234567888999999999999863 22 47889
Q ss_pred ecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 299 TDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 299 T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
|.+..-|||+=..+-+|+++..|++..-.|.+-|+-|.|+...|++|-..-|..+.+.|.+
T Consensus 797 trag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred hccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999888899999999999999999999999999999999988888777666543
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.30 E-value=5e-11 Score=106.03 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCCCCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~----~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++|. |||.|.+.+.. +.+++++++.+|||+|||++++.|++.++...... ..+.+++|.++|..+..|...++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 5665 59999995554 44778999999999999999999998877653210 01247999999999999887777
Q ss_pred HHH
Q 013962 83 KAL 85 (433)
Q Consensus 83 ~~~ 85 (433)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.30 E-value=5e-11 Score=106.03 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=59.2
Q ss_pred CCCCCCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~----~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++|. |||.|.+.+.. +.+++++++.+|||+|||++++.|++.++...... ..+.+++|.++|..+..|...++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 5665 59999995554 44778999999999999999999998877653210 01247999999999999887777
Q ss_pred HHH
Q 013962 83 KAL 85 (433)
Q Consensus 83 ~~~ 85 (433)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 171
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.1e-10 Score=106.04 Aligned_cols=350 Identities=21% Similarity=0.233 Sum_probs=216.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEE-EcCCCChH--HHHHHHHHHHHHhhcCC-------C----------------CC
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLG-CAETGSGK--TAAFTIPMIQHCVAQTP-------V----------------GR 59 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~-~~~TGsGK--T~~~~~~~~~~~~~~~~-------~----------------~~ 59 (433)
...-..+++.|.+.+..+.+-++++. .+..+.|+ +.+|++-++++++.... . ..
T Consensus 211 ~K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 211 QKKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred ccccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 44456789999999999998888665 34445555 45677888888765211 0 01
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE---------EECCC--------CHHHHHH--------------
Q 013962 60 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI---------VVGGT--------NIAEQRS-------------- 108 (433)
Q Consensus 60 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~---------~~~~~--------~~~~~~~-------------- 108 (433)
...++|||+||+++-|-.+.+.+..++.....-+..+ +.|.+ .+.....
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 2358999999999999999988888743211101100 11100 0000000
Q ss_pred ----------HhhCCCcEEEeccHHHHHHHHcC------CCCCCCccEEEEcccchhccCCCHHHHHHHHhhC---CC--
Q 013962 109 ----------ELRGGVSIVVATPGRFLDHLQQG------NTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PD-- 167 (433)
Q Consensus 109 ----------~~~~~~~Ivv~T~~~l~~~~~~~------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~---~~-- 167 (433)
.-....+|+|++|=-|.-.+... .-.++++.++|||-+|.++...|.. +..++..+ |.
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccc
Confidence 01356799999998886665522 2346789999999999887543332 33333333 22
Q ss_pred -------------------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecC----------cCCCCCCceEEEEEcCch
Q 013962 168 -------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK----------VSSPTANVIQILEKVSEN 218 (433)
Q Consensus 168 -------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 218 (433)
-.|.+++|+--.+.+......++.+........ ...+...+.+.+..-+..
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 125666776666666666666654422111110 011111122222222222
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 013962 219 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA 298 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 298 (433)
+-.+................ ....-+|||.|+.-.--++.+.+++..+..+.+|.-.+...-...-+.|..|...||+-
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k-~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIK-RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred cCchHHHHHHHHhhchhhcc-cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 33333333333322221111 11223899999999999999999999888888887777777777778899999999999
Q ss_pred ecc--cccCcccCCCcEEEEccCCCChhHHHh---hcccCCCCC----CceeEEEEeccccHHHHHHH
Q 013962 299 TDV--ASRGLDVMGVAHVVNLDLPKTVEDYVH---RIGRTGRGG----SMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 299 T~~--~~~Gidip~~~~Vi~~~~~~s~~~~~Q---~~GR~~R~g----~~g~~~~~~~~~d~~~~~~~ 357 (433)
|.- .-+-.++.+++.||+|.+|..|.-|.- +.+|+.-.| ..-.|.++|++.|...++.+
T Consensus 609 TER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 609 TERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred ehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 954 447889999999999999999887754 555554433 23568899999998776665
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.08 E-value=1.3e-08 Score=98.03 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCC--Cce-----------eEEEEeccccHHHHHHH
Q 013962 291 GSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGG--SMG-----------QATSFYTDRDMLLVAQI 357 (433)
Q Consensus 291 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g--~~g-----------~~~~~~~~~d~~~~~~~ 357 (433)
...+.|++.++|-+|||-|+|=.++-.....|..+=.|.+||+.|.. +.| .-.+++...+..+++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999951 222 23445666778888888
Q ss_pred HHHhhhh
Q 013962 358 KKAIVDA 364 (433)
Q Consensus 358 ~~~~~~~ 364 (433)
.+.+.+.
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 8776654
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.05 E-value=1.5e-09 Score=104.43 Aligned_cols=324 Identities=18% Similarity=0.189 Sum_probs=184.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE
Q 013962 15 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 94 (433)
Q Consensus 15 ~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 94 (433)
+-.+.+..+..+.-+++.+.||.|||.-+...+++.+.++.. .--..+.+.-|++-.+.-+++++.+--.. .+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e----~~ 454 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGE----EV 454 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHH----hh
Confidence 344555666677789999999999999998989998887542 22344677778887777777666543211 11
Q ss_pred EEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCCCCcEEE
Q 013962 95 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLL 173 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~ 173 (433)
+...|-.... ....-...--|+++|.+-++..+... +..+.++|+||.|..-..+ +...+..-+...-...++++
T Consensus 455 g~tvgy~vRf-~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 455 GETCGYNVRF-DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccccc-cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 1111111000 00000112358889999998877754 4557899999999643221 22211111111122344566
Q ss_pred EEeecchHHH--------------------HHHHHhcCCCeEEEecCcCCCCC-Cce-----------EEEEEcCch---
Q 013962 174 FSATMPVEIE--------------------ALAQEYLTDPVQVKVGKVSSPTA-NVI-----------QILEKVSEN--- 218 (433)
Q Consensus 174 ~SAT~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~--- 218 (433)
||||+..... .++...+..+............. ... ..+......
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 6666532211 11111111111000000000000 000 000000000
Q ss_pred ----------hhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-------CCceeeecCCCCHHHH
Q 013962 219 ----------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDR 281 (433)
Q Consensus 219 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r 281 (433)
...+. .-.+.+..........-.+-+++|.+-....-.++..|... ...+...|+.....+.
T Consensus 611 ~~~~~am~~~se~d~-~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDI-PFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred chhhhhhhcchhhcc-hhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 00000 11111222222223344466999999999888888887654 3467788998888888
Q ss_pred HHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC------------------CChhHHHhhcccCCCCCCceeEE
Q 013962 282 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------------------KTVEDYVHRIGRTGRGGSMGQAT 343 (433)
Q Consensus 282 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~ 343 (433)
.++.+....|..+++++|.+++..+.+-++..||+.+.. .|.....|+.||+||. .+|.|.
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 899888888999999999999999888777766654322 2566779999999998 568888
Q ss_pred EEeccccH
Q 013962 344 SFYTDRDM 351 (433)
Q Consensus 344 ~~~~~~d~ 351 (433)
.+++..-+
T Consensus 769 ~lcs~arF 776 (1282)
T KOG0921|consen 769 HLCSRARF 776 (1282)
T ss_pred cccHHHHH
Confidence 88865433
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.04 E-value=8.5e-10 Score=107.51 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=92.0
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCC-CcE-EEEecccccCcccCCCcEEEEccCC
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS-TNI-LVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
++++||+.-...+..++..|...++....+.|.|+...|...+..|..+. ..| +++..+.+.|+|+-.+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999988999999999999999999999998653 344 4466899999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEE
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSF 345 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~ 345 (433)
|++...-|.+-|++|.|+...+.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeee
Confidence 9999999999999999998776653
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.02 E-value=1.3e-10 Score=113.60 Aligned_cols=264 Identities=17% Similarity=0.204 Sum_probs=158.3
Q ss_pred cHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 13 TSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 13 ~~~Q~~~i~~~~~-~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
.|.|...+..+.. ..++++-+|||+|||++|...++..+...+ +.+++++.|.++|+..-.+.+...... ++
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~-~g 1001 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDEL-PG 1001 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhccc-CC
Confidence 3445555544442 357899999999999999888877766543 788999999999999888887776544 48
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHH--cCCCCCCCccEEEEcccchhccCCCHHHHHHHH-------
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ--QGNTSLSRVSFVILDEADRMLDMGFEPQIREVM------- 162 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~--~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~------- 162 (433)
+++..+.|+...... --..++++|+||++.....+ .+...+.+++++|+||.|++.+. +.+.+..+.
T Consensus 1002 ~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred ceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCc
Confidence 889999888765521 12457999999999977766 34456778999999999977654 333333222
Q ss_pred hhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCC
Q 013962 163 QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPF 242 (433)
Q Consensus 163 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (433)
...++..+.+++|.-+. +...+ ..+++.+.. ........+..........+....-..+....+.........+|.
T Consensus 1078 ~~t~~~vr~~glsta~~-na~dl-a~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTALA-NANDL-ADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred cccCcchhhhhHhhhhh-ccHHH-HHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 22234456666654443 22223 333333222 122222222222222221111111222333445556666777899
Q ss_pred CeEEEEEeccccHHHHHHHHHH----CCCceeeecCCCCHHHHHHHHHHHhcCCC
Q 013962 243 PLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGST 293 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 293 (433)
.|++||+.+++....-+..|-. ..-+...++ ++..+-+.++....+...
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~L 1206 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNL 1206 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccch
Confidence 9999999998865444443322 222223333 335555666666555443
No 176
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.96 E-value=1e-06 Score=83.48 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=68.2
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCC-------ceeeecCCCCHHHHHHHHHHHh----cCCCcEEEEe--cccccCcccC
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGL-------HAVALHGGRNQSDRESALRDFR----NGSTNILVAT--DVASRGLDVM 309 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T--~~~~~Gidip 309 (433)
+-+++|+|+.+....+.+.+...|+ +.+.+-..-+ -..+++.+. .|...+|+|. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 3499999999999999888886653 2222222222 344555554 3555688877 7899999997
Q ss_pred C--CcEEEEccCCCC--------------------------------hhHHHhhcccCCCCCCceeEEEEe
Q 013962 310 G--VAHVVNLDLPKT--------------------------------VEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 310 ~--~~~Vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
+ +++|+.++.|.. .....|.+|||-|..++=.+++++
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 6 889999888852 112358999999985544444444
No 177
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=8.8e-09 Score=95.38 Aligned_cols=143 Identities=22% Similarity=0.217 Sum_probs=77.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH--
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-- 107 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 107 (433)
+..|+||||||+++...++..+-.. -...|+.|......+.....+..-...---+.-.+..++...+...
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 3579999999998766666655442 3456777777777665544433211000011122222332221111
Q ss_pred --HHhhCCCcEEEeccHHHHHHHHcCC---C---CCCCccEEEE-cccchhccCC---------CHHHHHH-HHhhCC--
Q 013962 108 --SELRGGVSIVVATPGRFLDHLQQGN---T---SLSRVSFVIL-DEADRMLDMG---------FEPQIRE-VMQNLP-- 166 (433)
Q Consensus 108 --~~~~~~~~Ivv~T~~~l~~~~~~~~---~---~~~~~~~vIi-DE~h~~~~~~---------~~~~~~~-~~~~~~-- 166 (433)
..-+.+..|+++|.+.|...+.+.. . ++.+..+|.+ ||+|++-... ....|.. ++..+.
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 1123457899999999977665432 2 3455667666 9999975321 1111221 222222
Q ss_pred CCCcEEEEEeecc
Q 013962 167 DKHQTLLFSATMP 179 (433)
Q Consensus 167 ~~~~~i~~SAT~~ 179 (433)
+..-++.+|||.+
T Consensus 154 kd~~~lef~at~~ 166 (812)
T COG3421 154 KDNLLLEFSATIP 166 (812)
T ss_pred CCceeehhhhcCC
Confidence 2334778899988
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.85 E-value=3.5e-08 Score=85.58 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHhh----------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVAL----------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
.++..|.|++-.+. .+..+++-..||.||.-+....++.+.++. .++.|+++.+..|.....+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCceEEEECChhhhhHHHH
Confidence 47889999996664 234589999999999988777777777663 5579999999999999888
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC---CCC--------CC-ccEEEEcccch
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN---TSL--------SR-VSFVILDEADR 148 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~--------~~-~~~vIiDE~h~ 148 (433)
.++.+... .+.+..+..-... ....-+..|+++|+..|........ ..+ .+ -.+||+||||.
T Consensus 110 Dl~DIG~~--~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 110 DLRDIGAD--NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHhCCC--cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 88887543 2222222211100 0112245799999999866543211 110 11 25899999999
Q ss_pred hccCCCH--------HHHHHHHhhCCCCCcEEEEEeecchH
Q 013962 149 MLDMGFE--------PQIREVMQNLPDKHQTLLFSATMPVE 181 (433)
Q Consensus 149 ~~~~~~~--------~~~~~~~~~~~~~~~~i~~SAT~~~~ 181 (433)
..+.... .....+...+| +.+++.+|||...+
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 8765421 23444555564 77799999997544
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.83 E-value=7.4e-08 Score=96.33 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=58.1
Q ss_pred hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 110 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 110 ~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
++....|++.||..+...+..+...+..+..|||||||++........+..++..-.+..-+.+||+.|
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 445578999999999988888899999999999999999987766666677776666677789999998
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.81 E-value=1.1e-08 Score=89.40 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcC-CCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~-~l~~~~TGsGKT~~~~~~~~~~~~~~~-~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
++.+.|.+|+..+++... .+|.||+|+|||.+.. .++..+.... ......+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999999888 9999999999996544 4444442100 00112488999999999999999988887
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.80 E-value=4e-08 Score=82.44 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 11 RPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
+|++-|.+++..++... -.++.++.|+|||.+ +..+...+... +.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 47899999999997543 478899999999975 45455555442 7889999999988886554411
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC----CCCCCccEEEEcccchhccCCCHHHHHHHHhh
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEPQIREVMQN 164 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 164 (433)
+-..|...++....... ..+...++|||||+-.+. ...+..++..
T Consensus 68 ---------------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~ 116 (196)
T PF13604_consen 68 ---------------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRL 116 (196)
T ss_dssp ---------------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHH
T ss_pred ---------------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHH
Confidence 11233333322221111 114557899999999774 4467777777
Q ss_pred CCC-CCcEEEEEee
Q 013962 165 LPD-KHQTLLFSAT 177 (433)
Q Consensus 165 ~~~-~~~~i~~SAT 177 (433)
.+. ..++|++.-+
T Consensus 117 ~~~~~~klilvGD~ 130 (196)
T PF13604_consen 117 AKKSGAKLILVGDP 130 (196)
T ss_dssp S-T-T-EEEEEE-T
T ss_pred HHhcCCEEEEECCc
Confidence 765 5666666554
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.74 E-value=3.3e-08 Score=82.03 Aligned_cols=142 Identities=15% Similarity=0.260 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH-------HHHHH
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-------IEKEV 82 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q-------~~~~~ 82 (433)
.-.++.|..++.++...+-+++.+|.|+|||+.++..++..+... .-.+++++-|..+..+. ..+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 446889999999999888899999999999999998888887663 26778888887753111 11111
Q ss_pred HHHhc----cCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHH
Q 013962 83 KALSR----SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 83 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
..+.. .+..+. +....+ .+.....|-+.....+. + ..+. -.+||+|||+.+. ...+
T Consensus 77 ~p~~~p~~d~l~~~~-----~~~~~~----~~~~~~~Ie~~~~~~iR-----G-rt~~-~~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----GKEKLE----ELIQNGKIEIEPLAFIR-----G-RTFD-NAFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -TTTHHHHHHHTTTS------TTCHH----HHHHTTSEEEEEGGGGT-----T---B--SEEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHh-----ChHhHH----HHhhcCeEEEEehhhhc-----C-cccc-ceEEEEecccCCC----HHHH
Confidence 11100 000000 111111 11223456565544332 1 1122 3789999999874 6688
Q ss_pred HHHHhhCCCCCcEEEEEee
Q 013962 159 REVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT 177 (433)
..++.++..+.+++++.-+
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 9999999888888877554
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.65 E-value=8.1e-08 Score=78.41 Aligned_cols=104 Identities=23% Similarity=0.290 Sum_probs=72.2
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCC--ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccCcccCC--CcEEEE
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESALRDFRNGSTNILVATD--VASRGLDVMG--VAHVVN 316 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gidip~--~~~Vi~ 316 (433)
+.+|||++|....+.+.+.+..... ...++.. +..++..+++.|++++-.||+++. .+++|+|+|+ +++||.
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 6799999999999999999977632 2223332 366888999999999999999998 9999999996 788999
Q ss_pred ccCCCC------------------------------hhHHHhhcccCCCCCCceeEEEEecc
Q 013962 317 LDLPKT------------------------------VEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 317 ~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
.+.|.. .....|.+||+-|...+-.++++++.
T Consensus 88 ~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 88 VGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 988851 11235999999998665555555543
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.57 E-value=7.6e-07 Score=74.56 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 11 RPTSIQAQAMPVALS---GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~---~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.+|+.|.+....+.+ +.+.+.++-+|.|||.+ +.|++..++.+. ..-+.++|| ++|..|.++.+...++
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~LvrviVp-k~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVRVIVP-KALLEQMRQMLRSRLG 94 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 579999999999985 46899999999999976 588888877753 466777888 6899999999887765
Q ss_pred cCCCceEEEEE--CCCC--HHH---HH---HHhhCCCcEEEeccHHHHHH
Q 013962 88 SLDSFKTAIVV--GGTN--IAE---QR---SELRGGVSIVVATPGRFLDH 127 (433)
Q Consensus 88 ~~~~~~~~~~~--~~~~--~~~---~~---~~~~~~~~Ivv~T~~~l~~~ 127 (433)
.+-+-.+..+. .... ... .. ........|+++||+.+..+
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 44333332221 1111 111 11 11223557999999987544
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.55 E-value=3e-07 Score=85.85 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~-~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
.+.+-|..|+....+.++ .++.||+|+|||.+....+.+.+.+ ++++|+..|+..-++.+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 467889999999998755 7889999999998865555554444 8999999999999998888644
No 186
>PRK10536 hypothetical protein; Provisional
Probab=98.55 E-value=3.5e-06 Score=72.07 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=83.7
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH-------HH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ-------QI 78 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~-------q~ 78 (433)
..++.-.+..|...+.++.++..+++.||+|+|||+.+....+..+... .-.++++.=|.....+ ..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3455556889999999999888899999999999998877777665442 1445666656654221 11
Q ss_pred HHHHHHHhccC-CCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHH
Q 013962 79 EKEVKALSRSL-DSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
.+.+..++..+ +.+.. +.+. ......+. ....|-+.....+ ++ ..+ +-++||+|||+.+. ..
T Consensus 128 ~eK~~p~~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l~ym-----RG-rtl-~~~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPFAYM-----RG-RTF-ENAVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecHHHh-----cC-Ccc-cCCEEEEechhcCC----HH
Confidence 22222222110 00000 0011 11111111 1234545443222 11 112 24799999999874 46
Q ss_pred HHHHHHhhCCCCCcEEEE
Q 013962 157 QIREVMQNLPDKHQTLLF 174 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~ 174 (433)
.+..++.++..+.++|++
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 788888888888876654
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.55 E-value=2.9e-07 Score=86.57 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=67.8
Q ss_pred cccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 4 IEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 4 ~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+...+..++...|..|+.+++++.-.||++|+|+|||.+... ++.++.+. .+..+|+++|+..-++|+++.+.
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHHH
Confidence 345688899999999999999988999999999999987644 44454443 37889999999999999999888
Q ss_pred HHhccCCCceEEEEEC
Q 013962 84 ALSRSLDSFKTAIVVG 99 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~ 99 (433)
+- ++++..+..
T Consensus 476 ~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 476 KT-----GLKVVRLCA 486 (935)
T ss_pred hc-----CceEeeeeh
Confidence 73 566655543
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.43 E-value=9.2e-07 Score=81.74 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=62.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 107 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
-++|.|..|||||++++. ++..+.. ...+..+++++++..|.....+.+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~-------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NP-------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhc-----------cc--------
Confidence 478999999999987654 4444311 1137889999999999998877776532 00
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~ 152 (433)
......+..+..+.+...........+++|||||||++...
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 58 ----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred ----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhc
Confidence 01123344455554433322334567999999999999873
No 189
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.40 E-value=0.00027 Score=65.31 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=52.7
Q ss_pred cCCCCCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+.|...+|.|.+=+..+. .+.+.++.||+|+|||...+..++.+-...+. ...+.++.+-|..-.+....+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHH
Confidence 5788889999988776555 46789999999999997655555544444321 244567777666666666666
Q ss_pred HHHHh
Q 013962 82 VKALS 86 (433)
Q Consensus 82 ~~~~~ 86 (433)
++.+.
T Consensus 87 l~~l~ 91 (755)
T KOG1131|consen 87 LKRLM 91 (755)
T ss_pred HHHHH
Confidence 66554
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.38 E-value=5.7e-06 Score=81.87 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+.+.|.+|+..++.. ..++|.||+|+|||.+....+ ..+... +.++|+++|+..-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii-~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELI-RQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHH-HHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 568999999999997765444 444432 67899999999999999888876
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.33 E-value=1.1e-05 Score=78.70 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCce
Q 013962 14 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFK 93 (433)
Q Consensus 14 ~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 93 (433)
++|+.|+..++.++-++|.|+.|+|||.+. ..++..+...... ....++++++||---+..+.+.+......+.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~--- 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLA--- 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccc---
Confidence 789999999999889999999999999764 4444444432110 0125799999998888877776655432211
Q ss_pred EEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHH------cCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC
Q 013962 94 TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 167 (433)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~------~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~ 167 (433)
.. . .......+-..|..+|+.... ........+++|||||+-++. ...+..++..+++
T Consensus 222 ~~--------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 222 AA--------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred cc--------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 00 0 000111223455555543221 111223358899999999653 4567788888888
Q ss_pred CCcEEEEEee
Q 013962 168 KHQTLLFSAT 177 (433)
Q Consensus 168 ~~~~i~~SAT 177 (433)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888877554
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=98.33 E-value=3.2e-06 Score=58.44 Aligned_cols=60 Identities=30% Similarity=0.427 Sum_probs=42.1
Q ss_pred HHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 19 AMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 19 ~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++...+++ .-++|.+|+|+|||.+++..+...+.... .+ +.++++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 45533343 44666999999999876665555543211 12 678999999999999888777
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.32 E-value=9.1e-06 Score=79.56 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=90.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCc
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 92 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 92 (433)
.++|++|+...+.++-++|.+++|+|||.+. ..++..+.+.. .....+++++.||-.-+..+.+.+......++ +
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c
Confidence 5899999999999888999999999999764 34444443321 11245789999999988888777765432221 0
Q ss_pred eEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHH------cCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC
Q 013962 93 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166 (433)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~------~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~ 166 (433)
. .. .......-..|..+|+.... .+....-.+++|||||+-++ -...+..++..++
T Consensus 229 ---------~-~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~ 290 (615)
T PRK10875 229 ---------T-DE----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALP 290 (615)
T ss_pred ---------c-hh----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcc
Confidence 0 00 00011112344444432211 11112234689999999965 2567788888899
Q ss_pred CCCcEEEEEee
Q 013962 167 DKHQTLLFSAT 177 (433)
Q Consensus 167 ~~~~~i~~SAT 177 (433)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 89988888655
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.28 E-value=6.4e-06 Score=82.82 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..+++.|++|+..+..++-++|.++.|+|||.+. ..++..+.... ....+++++||-.-+..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc-------
Confidence 4789999999999998888999999999999753 44555444321 0167888999987776443221
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-----CCCCCCCccEEEEcccchhccCCCHHHHHHHHhh
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-----GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 164 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-----~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 164 (433)
+.. -.|..+++..... ........++||+||++++. ...+..++..
T Consensus 389 -g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 110 0121222111000 00112347899999999764 4466777788
Q ss_pred CCCCCcEEEEEee
Q 013962 165 LPDKHQTLLFSAT 177 (433)
Q Consensus 165 ~~~~~~~i~~SAT 177 (433)
++...++|++.-+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888877655
No 195
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.24 E-value=1.3e-05 Score=77.24 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=97.4
Q ss_pred CCCCcHHHHHHHHHhhc--------CC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 9 YTRPTSIQAQAMPVALS--------GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~--------~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
.-.+...|.+|+-.+.+ |. .+||-...|.||--+..-.+++.+++. .+++||+.-+..|.-.-
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDA 334 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccch
Confidence 34578889999966652 32 378877778887766666677777764 78899999999987776
Q ss_pred HHHHHHHhccCCCceEEEEECCCCHHHHHH--HhhCCCcEEEeccHHHHHHHHcCCCC------------CCC-ccEEEE
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNIAEQRS--ELRGGVSIVVATPGRFLDHLQQGNTS------------LSR-VSFVIL 143 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~~~~~~------------~~~-~~~vIi 143 (433)
.+.+..... .++.+..+..-.-. .... .-+-+-.|+++|+..|.-.-...... =.+ -++|||
T Consensus 335 ERDL~DigA--~~I~V~alnK~KYa-kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 335 ERDLRDIGA--TGIAVHALNKFKYA-KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hhchhhcCC--CCccceehhhcccc-cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 666766542 23444333211100 0000 01123469999998775332211100 011 268999
Q ss_pred cccchhccCC---------CHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 144 DEADRMLDMG---------FEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 144 DE~h~~~~~~---------~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
||||...+.. .+..+..+.+.+| +.+++..|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 9999866511 4445666666665 78899999994
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.19 E-value=8.7e-06 Score=71.88 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=88.9
Q ss_pred cCCCCCCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
-.|+.-...+|.-|+..++... =+.+.++-|+|||+.++.+.++..+... .-.+++|.=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-----~y~KiiVtRp~vpvG~dI----- 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-----RYRKIIVTRPTVPVGEDI----- 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-----hhceEEEecCCcCccccc-----
Confidence 4577777789999999999654 3888999999999999999988887753 256677777877654321
Q ss_pred HHhccCCCceEEEEECCCC--HHHHHHHhhCCCcEEE----eccHHHHHHHHcCCCCCCC----------ccEEEEcccc
Q 013962 84 ALSRSLDSFKTAIVVGGTN--IAEQRSELRGGVSIVV----ATPGRFLDHLQQGNTSLSR----------VSFVILDEAD 147 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Ivv----~T~~~l~~~~~~~~~~~~~----------~~~vIiDE~h 147 (433)
+.+-|... ...|...+..+-..+. ++.+.+-..+.+....+.. -.+||||||+
T Consensus 293 -----------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ 361 (436)
T COG1875 293 -----------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ 361 (436)
T ss_pred -----------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhh
Confidence 11111111 1111111111111111 1123333333332222111 2589999999
Q ss_pred hhccCCCHHHHHHHHhhCCCCCcEEEEEe
Q 013962 148 RMLDMGFEPQIREVMQNLPDKHQTLLFSA 176 (433)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 176 (433)
.+. ...++.++.+..++.++|++.-
T Consensus 362 NLT----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 362 NLT----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ccC----HHHHHHHHHhccCCCEEEEcCC
Confidence 884 6689999999988888776643
No 197
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.08 E-value=2.9e-05 Score=76.01 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-------------------CC----------
Q 013962 11 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-------------------PV---------- 57 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-------------------~~---------- 57 (433)
+|++.|..-+..++ ...+.++..|||+|||+..+...+.+..... +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999999888777 4568999999999999877655555433211 00
Q ss_pred CC-----CCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 58 GR-----GDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 58 ~~-----~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.. -..+++++-+-|..-..|..+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 00 124678888888888888988888754
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.06 E-value=4.1e-05 Score=60.17 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=53.3
Q ss_pred eecCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCcccCC--CcEEEEccCCCC-------------------------
Q 013962 271 ALHGGRNQSDRESALRDFRNGS-TNILVATDVASRGLDVMG--VAHVVNLDLPKT------------------------- 322 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gidip~--~~~Vi~~~~~~s------------------------- 322 (433)
++.-+....+...+++.|.+.. ..||++|..+++|+|+|+ +++||..+.|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3443445556788899998754 369999988999999997 678998887641
Q ss_pred ------hhHHHhhcccCCCCCCceeEEEEe
Q 013962 323 ------VEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 323 ------~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
...+.|.+||+-|...+-.+++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 122368889999976543344444
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.03 E-value=7.1e-05 Score=75.74 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 10 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
..+++-|.+|+..++.+ +-++|.++.|+|||.+ +-.+...+... +..+++++||-..+..+.+. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~~~----~-- 416 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQAE----S-- 416 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHHhc----c--
Confidence 35899999999999874 5689999999999965 34444443332 78899999997665544321 1
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 167 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~ 167 (433)
++.. .|..++...+......+...++|||||+-++.. ..+..++... +.
T Consensus 417 --g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 417 --GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEA 466 (744)
T ss_pred --CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhc
Confidence 1111 122223221222223355688999999997643 2344455432 34
Q ss_pred CCcEEEEE
Q 013962 168 KHQTLLFS 175 (433)
Q Consensus 168 ~~~~i~~S 175 (433)
..++|++.
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 56666665
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=0.00011 Score=57.38 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=58.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
+++.++|.|++|+|||.++ ..+...+...... ..+...+.+-+|...-...+...+...+...... .....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 73 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI-KRLARQLNAEAEI-KNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTSD 73 (131)
T ss_dssp ----EEEEE-TTSSHHHHH-HHHHHHHHHHHHH-CCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-HH
T ss_pred CCcccEEEcCCCCCHHHHH-HHHHHHhHHhhhc-cCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCHH
Confidence 3456899999999999764 3344443321000 0013444555555443444555555444321100 11111
Q ss_pred HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 105 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
... +.+.+.+.... ..+|||||+|++. ....+..+........-.+.+++|+
T Consensus 74 ~l~--------------~~~~~~l~~~~-----~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELR--------------SLLIDALDRRR-----VVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHH--------------HHHHHHHHHCT-----EEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHH--------------HHHHHHHHhcC-----CeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 110 22333333322 2689999999974 1445555544444444456677776
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.00 E-value=8.5e-05 Score=76.37 Aligned_cols=123 Identities=20% Similarity=0.144 Sum_probs=77.4
Q ss_pred CCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 11 RPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
.|++-|.+|+..++.++ -++|.++.|+|||.+ +-.+...+.. .+..++.++||-..+..+.+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e~-------- 409 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEGG-------- 409 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhhc--------
Confidence 68999999999999755 478999999999975 4444444333 278899999997665543210
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CCC
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDK 168 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~ 168 (433)
.++. -.|..+|..........+...++|||||+-++. ...+..++... +..
T Consensus 410 tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAG 461 (988)
T ss_pred cCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCC
Confidence 0111 113333322222222335567899999999764 33455555543 456
Q ss_pred CcEEEEEee
Q 013962 169 HQTLLFSAT 177 (433)
Q Consensus 169 ~~~i~~SAT 177 (433)
.++|++.-+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 777777655
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.99 E-value=4.8e-05 Score=59.89 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCC---ceeeecCCCCHHHHHHHHHHHhcCCC---cEEEEecc--cccCcccCC--CcEEEEccCCCC--
Q 013962 255 CDEVSEALVAEGL---HAVALHGGRNQSDRESALRDFRNGST---NILVATDV--ASRGLDVMG--VAHVVNLDLPKT-- 322 (433)
Q Consensus 255 ~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gidip~--~~~Vi~~~~~~s-- 322 (433)
.+.+.+.+...+. ...++.-.....+...+++.|++..- .||+++.- +++|+|+|+ +++||..+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223322333455678888887533 58998876 999999998 678998887741
Q ss_pred -----------------------------hhHHHhhcccCCCCCCceeEEEEe
Q 013962 323 -----------------------------VEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 323 -----------------------------~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
.....|.+||+-|...+-.+++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 122369999999986544444444
No 203
>PRK06526 transposase; Provisional
Probab=97.99 E-value=2.4e-05 Score=68.24 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 21 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 21 ~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
..+..+.++++.||+|+|||..+.... ..+... |..++++..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~-~~a~~~-------g~~v~f~t~ 134 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLG-IRACQA-------GHRVLFATA 134 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHH-HHHHHC-------CCchhhhhH
Confidence 444466799999999999998765433 333332 566666433
No 204
>PRK08181 transposase; Validated
Probab=97.95 E-value=0.00013 Score=64.14 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 10 TRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 10 ~~~~~~Q~~~i~----~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
..+.+.|..++. .+..++++++.||+|+|||..+. .+...+... +..++++. ...|..+.
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~-------g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN-------GWRVLFTR-TTDLVQKL 149 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc-------CCceeeee-HHHHHHHH
Confidence 335567777774 34467889999999999997654 344444432 55665554 34555544
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.90 E-value=3.7e-05 Score=78.05 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=97.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhc----------CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEE
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQ----------TPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA 95 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----------~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 95 (433)
|+.+++.-..|.|||...+...+...... .......-+.+||||| .++..||..++...... .+.+.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccc--cceEE
Confidence 46689999999999987665554432110 0011223567899999 58889999999998764 36776
Q ss_pred EEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC--------------CCCCC------ccEEEEcccchhccCCCH
Q 013962 96 IVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--------------TSLSR------VSFVILDEADRMLDMGFE 155 (433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~--------------~~~~~------~~~vIiDE~h~~~~~~~~ 155 (433)
.+.|-....-......-++|||+||++.|...+.+.. ....+ +-.|++|||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 6666443221111233568999999999966554331 11111 34599999996654 34
Q ss_pred HHHHHHHhhCCCCCcEEEEEeecchHHHH
Q 013962 156 PQIREVMQNLPDKHQTLLFSATMPVEIEA 184 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 184 (433)
....+....++ .....++|+||...+..
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 44555555555 33479999999655443
No 206
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.90 E-value=5.9e-05 Score=74.66 Aligned_cols=124 Identities=25% Similarity=0.227 Sum_probs=79.4
Q ss_pred CCCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 10 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~-~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
..+..-|++|+..++..++ .+|.|-+|+|||.+.. .++..+... |++||+.+=|..-++.+.-.++.+.
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~-------gkkVLLtsyThsAVDNILiKL~~~~-- 737 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVAL-------GKKVLLTSYTHSAVDNILIKLKGFG-- 737 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHHc-------CCeEEEEehhhHHHHHHHHHHhccC--
Confidence 4678899999998887665 7899999999997654 344444442 8899999999888887766666542
Q ss_pred CCCceEEEEECC---------------CCHHHH--HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 89 LDSFKTAIVVGG---------------TNIAEQ--RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 89 ~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
+....+..+ .+.+.. -....+...||.+|---+.+.+. ..+.|+++|||||-.+.
T Consensus 738 ---i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 ---IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ---cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 222111111 111111 11223567788888544433333 23559999999999754
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.89 E-value=4.1e-05 Score=64.00 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
.-.++.+|+|+|||..++.. +..+... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~~~-------g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYEER-------GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHHHc-------CCeEEEEec
Confidence 34688999999999765444 4443332 777888866
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.83 E-value=5.9e-05 Score=68.95 Aligned_cols=123 Identities=23% Similarity=0.166 Sum_probs=78.3
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
|++-|.+++.. ..+.++|.|+.|||||.+.+.-++..+.... .+..++|++++|+..+.++.+++...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 5688999999999999987776666655431 23567999999999999999999887643210
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCC--CCccEEEEcccc
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL--SRVSFVILDEAD 147 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~--~~~~~vIiDE~h 147 (433)
. ................+.|+|.+.|+..+.+..... -.-.+-++|+..
T Consensus 75 ~-------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E-------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C-------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c-------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 000011122222335788999998866554322111 113456667776
No 209
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.78 E-value=0.0003 Score=72.91 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 10 TRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~-~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
..|++-|.+|+..+.. ++-++|.|+.|+|||.+ +-.+...+... |.+++.++||-.-+..+. ...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgkAA~~L~----e~~-- 445 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGKAAEGLE----KEA-- 445 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHHHHHHHH----Hhh--
Confidence 3689999999998864 34589999999999964 45555544332 788999999976655432 211
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC-C
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-D 167 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-~ 167 (433)
++.. .|...|..........+..-++|||||+.++. ...+..++...+ .
T Consensus 446 --Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 446 --GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRA 495 (1102)
T ss_pred --CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 1211 22222211111122345567799999999764 445556666554 4
Q ss_pred CCcEEEEEee
Q 013962 168 KHQTLLFSAT 177 (433)
Q Consensus 168 ~~~~i~~SAT 177 (433)
..++|++.-+
T Consensus 496 garvVLVGD~ 505 (1102)
T PRK13826 496 GAKLVLVGDP 505 (1102)
T ss_pred CCEEEEECCH
Confidence 6777777655
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.65 E-value=0.00062 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++.+++.||+|+|||..+ ..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~-~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA-RAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 567999999999999643 4344443
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.62 E-value=0.00021 Score=62.18 Aligned_cols=57 Identities=21% Similarity=0.478 Sum_probs=50.2
Q ss_pred HHHHHHhcCCCcEEEEecccccCcccCC--------CcEEEEccCCCChhHHHhhcccCCCCCCc
Q 013962 283 SALRDFRNGSTNILVATDVASRGLDVMG--------VAHVVNLDLPKTVEDYVHRIGRTGRGGSM 339 (433)
Q Consensus 283 ~~~~~f~~g~~~vlv~T~~~~~Gidip~--------~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 339 (433)
...+.|++|+.+|+|.+++.++|+.+.. -++-|...+|||....+|..||++|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 4457899999999999999999999853 34677889999999999999999999884
No 212
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.58 E-value=0.00026 Score=61.31 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 133 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 133 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.....++.+|+||||.|... ....+.+.+...+...++++.+.-+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 34556899999999988754 34456677777777778888877653
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.0016 Score=59.04 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=72.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCc---HHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT---RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~---~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
-+++.+++|+|||.+.. .+...+... +.+++++... ..-..|+......+ ++.+.....+.+..
T Consensus 142 vi~~~G~~GvGKTTtia-kLA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~l-----gv~v~~~~~g~dp~ 208 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIA-KLAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAERL-----GVKVIKHKYGADPA 208 (336)
T ss_pred EEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHHc-----CCceecccCCCCHH
Confidence 47889999999997643 333444332 5566666533 34445554433332 23222111111111
Q ss_pred HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCHHHHHHHHhhCCCCCcEEEEEeecchHHH
Q 013962 105 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183 (433)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 183 (433)
. .+.+.+... ...+.++|+||.++++.. ...-..+..+.....+...++.++||......
T Consensus 209 ~-----------------v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 A-----------------VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred H-----------------HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 0 011221110 113467999999998753 22445666666666677778888998876666
Q ss_pred HHHHHhc
Q 013962 184 ALAQEYL 190 (433)
Q Consensus 184 ~~~~~~~ 190 (433)
..+..|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6565553
No 214
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.55 E-value=0.0092 Score=66.89 Aligned_cols=135 Identities=13% Similarity=0.208 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 11 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
.+++-|.+|+..++.. +-.+|.++.|+|||.+ +-.+...+... |..+++++|+-.-+.++.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-------GYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 5889999999999865 4589999999999964 45555544332 8899999999887766654422110
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 167 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~ 167 (433)
.....+...+.. .....|...|. .....+..-++|||||+-++. ...+..++... +.
T Consensus 499 ------------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 499 ------------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred ------------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 000111111111 11122333333 223344567899999999764 44566666655 46
Q ss_pred CCcEEEEEee
Q 013962 168 KHQTLLFSAT 177 (433)
Q Consensus 168 ~~~~i~~SAT 177 (433)
+.++|++.-+
T Consensus 557 garvVlvGD~ 566 (1960)
T TIGR02760 557 NSKLILLNDS 566 (1960)
T ss_pred CCEEEEEcCh
Confidence 7888888665
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.53 E-value=0.00088 Score=56.08 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh
Q 013962 136 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
+++++|+||-+-+.... .....+..++....+...++.++||...........+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 34789999999765422 2345666777777666778999999977665555544
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=97.48 E-value=0.0012 Score=64.07 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=87.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|.|+|.+.+..+..++-.++..+=..|||.++...++....... +..+++++|+..-+...++.++.+...++
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 588999999998866666789999999999877655554444322 67899999999999999988887766543
Q ss_pred Cce-EEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCC--
Q 013962 91 SFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-- 167 (433)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~-- 167 (433)
.+. ........ ..-.+.++..|.+.|.+. ....=.+..++|+||+|.+.+ ....+..+...+..
T Consensus 133 ~l~~~~i~~~~~----~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEWNK----GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeecCc----cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 321 11111000 000113445554444221 001112367899999997654 23334444433332
Q ss_pred CCcEEEEEeecc
Q 013962 168 KHQTLLFSATMP 179 (433)
Q Consensus 168 ~~~~i~~SAT~~ 179 (433)
..+++ +..||.
T Consensus 200 ~~r~i-iiSTp~ 210 (534)
T PHA02533 200 SSKII-ITSTPN 210 (534)
T ss_pred CceEE-EEECCC
Confidence 23444 444443
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00037 Score=55.15 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
+..+++.+|+|+|||..+ ..++..+... +..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~-~~l~~~~~~~-------~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA-RALARELGPP-------GGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhccCCC-------CCCEEEECCEEcccc
Confidence 467899999999999754 3333333221 224777777655433
No 218
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.003 Score=58.56 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=67.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA-PT-RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
..+++.+|||+|||.++.-.+........ ..+..+.+++ .+ +.-+. ++++.+...+ ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa~---eQL~~~a~~l-gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGAK---KQIQTYGDIM-GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHHH---HHHHHHhhcC-CcceE---------
Confidence 45889999999999876543333222110 0144555444 32 22222 2244444332 22221
Q ss_pred HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCCC-CcEEEEEeecchHH
Q 013962 105 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK-HQTLLFSATMPVEI 182 (433)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~~SAT~~~~~ 182 (433)
++.+++.+...+.. +.+.++||||++.+..... ....+..++...... ..++.+|||.....
T Consensus 238 ------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 ------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 11233444443332 3568999999999875321 223455555555433 46788999986443
Q ss_pred -HHHHHHh
Q 013962 183 -EALAQEY 189 (433)
Q Consensus 183 -~~~~~~~ 189 (433)
......|
T Consensus 302 ~~~~~~~~ 309 (388)
T PRK12723 302 VKEIFHQF 309 (388)
T ss_pred HHHHHHHh
Confidence 3333444
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0016 Score=59.72 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+..+++.+|||+|||.++...+........ ..++.+++ +.....--.+.++.+...+ ++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G------~~~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~---------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG------ASKVALLT-TDSYRIGGHEQLRIFGKIL-GVPVH---------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEe-cccccccHHHHHHHHHHHc-CCceE----------
Confidence 457899999999999876544443333321 23454444 3332212234444444332 22222
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCCCCcEEEEEeecchHH-H
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEI-E 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~~~-~ 183 (433)
.+.++..+...+.. +.+.++|+||++-+..... ....+..+.....+...++.++||..... .
T Consensus 199 -----------~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 -----------AVKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred -----------ecCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 22233333332221 3457899999997543211 12222222222223345788899986544 3
Q ss_pred HHHHHh
Q 013962 184 ALAQEY 189 (433)
Q Consensus 184 ~~~~~~ 189 (433)
.....|
T Consensus 264 evi~~f 269 (374)
T PRK14722 264 EVVQAY 269 (374)
T ss_pred HHHHHH
Confidence 344444
No 220
>PRK08116 hypothetical protein; Validated
Probab=97.40 E-value=0.0018 Score=57.18 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
.+++.|++|+|||..+ ..+...+... +..++++. ...|..+
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~-------~~~v~~~~-~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK-------GVPVIFVN-FPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEE-HHHHHHH
Confidence 3999999999999865 4566666552 45555554 3455443
No 221
>PRK12377 putative replication protein; Provisional
Probab=97.39 E-value=0.0024 Score=55.43 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=35.4
Q ss_pred cHHHHHHHHHhh--------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 13 TSIQAQAMPVAL--------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 13 ~~~Q~~~i~~~~--------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
.+-|..++..+. ...++++.||+|+|||..+ ..+...+... +..++++ +...|..++.
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHH
Confidence 456666665433 2357999999999999764 4455555542 4555444 4456655443
No 222
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0014 Score=57.26 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=47.3
Q ss_pred ccccCCCCCCcHHHHHHHHHhh-------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVAL-------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 75 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~-------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~ 75 (433)
.++.+.|.-....+..++..+. ++.++++.||+|+|||..+.. +...+... |.. ++.+++.+|+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~~-------g~s-v~f~~~~el~ 145 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIA-IGNELLKA-------GIS-VLFITAPDLL 145 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHH-HHHHHHHc-------CCe-EEEEEHHHHH
Confidence 3456666667767777766655 467999999999999987644 44444441 444 5556667777
Q ss_pred HHHHHHHH
Q 013962 76 QQIEKEVK 83 (433)
Q Consensus 76 ~q~~~~~~ 83 (433)
.++...+.
T Consensus 146 ~~Lk~~~~ 153 (254)
T COG1484 146 SKLKAAFD 153 (254)
T ss_pred HHHHHHHh
Confidence 76554443
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0043 Score=56.84 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=67.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC--cH-HHHHHHHHHHHHHhccCCCceEEEEECCCCH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TR-ELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 103 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P--~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
+.+.+.||||+|||.++...+. .+... +.++.++.. .+ ...+|+. .+.... ++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~-------GkkVglI~aDt~RiaAvEQLk----~yae~l-gipv--------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK-------KKTVGFITTDHSRIGTVQQLQ----DYVKTI-GFEV--------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc-------CCcEEEEecCCcchHHHHHHH----HHhhhc-CCcE---------
Confidence 4578999999999976544433 33332 555555543 22 3444443 332211 1111
Q ss_pred HHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCCCCcEEEEEeecch-H
Q 013962 104 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPV-E 181 (433)
Q Consensus 104 ~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~~-~ 181 (433)
++..++..+.+.+..-. ...++++|+||-+-+..... .-..+..++....+...++.+|||... .
T Consensus 300 ------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 300 ------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 22345666655443211 11247899999987654321 233344444444444446678887654 4
Q ss_pred HHHHHHHh
Q 013962 182 IEALAQEY 189 (433)
Q Consensus 182 ~~~~~~~~ 189 (433)
....+..|
T Consensus 367 ~~~i~~~F 374 (436)
T PRK11889 367 MIEIITNF 374 (436)
T ss_pred HHHHHHHh
Confidence 45555555
No 224
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.36 E-value=9e-06 Score=79.01 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc---CCCcEEEEecccccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNILVATDVASRG 305 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~G 305 (433)
..+++++||.......+.+...+...+ ....+.|.....+|+..+.+|.. ...-.|++|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 456789999999999999999998888 88899999999999999999984 345688899887765
No 225
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.28 E-value=0.0018 Score=64.91 Aligned_cols=88 Identities=22% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..|++-|++|+..- ..+++|.|..|||||.+.+.-+...+.... .....+|+++.++..+..+.+++....+
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~lg-- 266 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRERLG-- 266 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHhcC--
Confidence 56899999999643 356899999999999886655544443321 1256899999999999998888877531
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHH
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL 128 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~ 128 (433)
...|-++|...|...+
T Consensus 267 -----------------------~~~v~v~TFHSlal~I 282 (684)
T PRK11054 267 -----------------------TEDITARTFHALALHI 282 (684)
T ss_pred -----------------------CCCcEEEeHHHHHHHH
Confidence 0267788888885433
No 226
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.00063 Score=63.19 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 11 RPTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 11 ~~~~~Q~~~i~~~------~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
+|++-|++++..+ ..+.++++.|+-|+|||+++ -.+...+.. .+..+++++||-.-+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~-------~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS-------RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc-------ccceEEEecchHHHHHh
Confidence 4788999999888 56778999999999999753 333333322 26789999998665543
No 227
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.25 E-value=0.0017 Score=65.34 Aligned_cols=71 Identities=21% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.|++-|.+|+... ...++|.|..|||||.+.+.-+...+.... -+..++|+++.|+..+.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999999763 467899999999999987666666554321 1246799999999999999999988754
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.006 Score=52.83 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHhhc--------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEE
Q 013962 12 PTSIQAQAMPVALS--------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~--------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl 68 (433)
..+.|..++..+.+ ...+++.+++|+|||..+ ..+...+... +..++++
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~~-------g~~v~~i 133 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLLR-------GKSVLII 133 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEE
Confidence 34567667655552 146899999999999765 4455555442 5666666
No 229
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=97.24 E-value=0.00033 Score=74.33 Aligned_cols=93 Identities=27% Similarity=0.371 Sum_probs=75.1
Q ss_pred EEEEEeccccHHHHHHHHHHCCC-ceeeecCCCC-----------HHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 245 TIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN-----------QSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
.++|++....+....+.+..... .+..+.|.+. ...+.+++..|....+++|++|.++.+|+|+|.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 79999999988888888876521 2222333221 22356789999999999999999999999999999
Q ss_pred EEEEccCCCChhHHHhhcccCCCCC
Q 013962 313 HVVNLDLPKTVEDYVHRIGRTGRGG 337 (433)
Q Consensus 313 ~Vi~~~~~~s~~~~~Q~~GR~~R~g 337 (433)
.|+.++.|.....|+|..||+-+.+
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997753
No 230
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.0071 Score=57.15 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC-c-HHHHHHHHHHHHHHhccCCCceEEEEECCCCH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-T-RELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 103 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P-~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
++.+++.+|||+|||.++...+....... .+.++.++.- + +.-+ .+.+..+.... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGA---VEQLKTYAKIM-GIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHH---HHHHHHHHHHh-CCce---------
Confidence 45688999999999987654444332121 1455555542 2 2111 23333333211 1211
Q ss_pred HHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhh-CCCCCcEEEEEeecchH
Q 013962 104 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQN-LPDKHQTLLFSATMPVE 181 (433)
Q Consensus 104 ~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~ 181 (433)
..+.+++.+...+.. +.+.++||||.+-+.... .....+..++.. ..+....+.++||....
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 112344444444432 235799999998754321 122345555542 22334578899998754
Q ss_pred HH-HHHHHh
Q 013962 182 IE-ALAQEY 189 (433)
Q Consensus 182 ~~-~~~~~~ 189 (433)
.. .....|
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 43 333444
No 231
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.19 E-value=0.0041 Score=50.52 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
+++.+++|+|||..+... +..... .+..++++.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i-~~~~~~-------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL-ALNIAT-------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHH-HHHHHh-------cCCEEEEEECCcchHH
Confidence 689999999999765433 333322 2677777776555443
No 232
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.18 E-value=0.0019 Score=65.82 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=56.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
..|++-|.+|+... ...++|.|..|||||.+...-+...+.... -+...+|+++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 56899999999753 467999999999999887666655543321 1256799999999999999999998764
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=97.18 E-value=0.0026 Score=55.10 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=26.8
Q ss_pred CccEEEEcccchhccCC-CHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 137 RVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
+.+++|+|++|.+.... +...+..++..+......+++|++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 46789999999775432 34456666665554444566666643
No 234
>PRK08727 hypothetical protein; Validated
Probab=97.17 E-value=0.0028 Score=54.95 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=23.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+.+++.||+|+|||..+. .+...+.+. +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~-------~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA-------GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc-------CCcEEEEe
Confidence 348999999999997543 344444432 55667664
No 235
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.17 E-value=0.0019 Score=69.54 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=83.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
++|+-|.+++. ..+++++|.|.-|||||.+.+--++..+.... +-.++++++=|+..+.++.+++.......
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~~l~~~- 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEEALQKA- 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHHHHHHH-
Confidence 46899999997 35788999999999999988777777665431 13569999999999999988888765321
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCC--ccEEEEcccch
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSR--VSFVILDEADR 148 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~--~~~vIiDE~h~ 148 (433)
+. .........+.+..-...-|+|.+.|+..+.+.....-+ ..+=|.||...
T Consensus 73 -~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 -LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 111112222233333467899999997666554432222 24556888774
No 236
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.16 E-value=0.0079 Score=55.02 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
++.+.+.||||.|||.+..-.++.+.+... +.+..+|.+.|=- .--+++++.+..-+ ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kVaiITtDtYR--IGA~EQLk~Ya~im-~v------------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKVAIITTDTYR--IGAVEQLKTYADIM-GV------------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----CcceEEEEeccch--hhHHHHHHHHHHHh-CC-------------
Confidence 567899999999999876544444442221 1333444444321 22345555554332 12
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc-cCCCHHHHHHHHhhCCCCCcEEEEEeecchH-HH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVE-IE 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~ 183 (433)
+-.++-+|.-|...+.. +.+.++|.||=+-+-. +......+..+.....+-...+.+|||.... +.
T Consensus 262 --------p~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 262 --------PLEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred --------ceEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHH
Confidence 23445566666555443 4567899999877533 2224455666666555555678899998644 44
Q ss_pred HHHHHh
Q 013962 184 ALAQEY 189 (433)
Q Consensus 184 ~~~~~~ 189 (433)
.....|
T Consensus 330 ei~~~f 335 (407)
T COG1419 330 EIIKQF 335 (407)
T ss_pred HHHHHh
Confidence 444544
No 237
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.16 E-value=0.002 Score=65.67 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
+..|+|-|.+|+... ...++|.|..|||||.+.+.-+...+.... -+...+|+|+-|+..+.++.+++.++..
T Consensus 7 l~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 7 LDSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HHhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 356999999999754 467999999999999887666665543221 1246799999999999999999988764
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.16 E-value=0.0041 Score=67.09 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 11 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
.|++-|.+|+..++.. +-++|.+..|+|||.+. -.++..+..- ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 6899999999999965 56899999999999753 3333322110 011267789999997766654
No 239
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.15 E-value=0.0056 Score=51.10 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=33.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+++.||+|+|||..++..+...+.. +..+++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998766555554432 7778888764 4566666666654
No 240
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.14 E-value=0.0015 Score=63.09 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhc-----C----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 14 SIQAQAMPVALS-----G----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 14 ~~Q~~~i~~~~~-----~----~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
|+|+-++..++. + +.+++..|=|-|||..+....+..+.-.+ ..+..++++++++.-+...++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g----~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG----EPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC----ccCceEEEEeCCHHHHHHHHHHHHH
Confidence 688888888772 1 24899999999999766555555554321 1378899999999999999999999
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS--LSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~--~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
+....+.+.... ... . .......|.....+.++..+...... =.+..++|+||+|.+.+......+..-.
T Consensus 77 ~i~~~~~l~~~~--~~~-~-----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKRK--KPK-I-----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccch--hhh-h-----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 876543222110 000 0 00011233332222222222221111 1247899999999886543333333333
Q ss_pred hhCCCCCcEEEE
Q 013962 163 QNLPDKHQTLLF 174 (433)
Q Consensus 163 ~~~~~~~~~i~~ 174 (433)
... ++++++.+
T Consensus 149 ~~r-~~pl~~~I 159 (477)
T PF03354_consen 149 GAR-PNPLIIII 159 (477)
T ss_pred ccC-CCceEEEE
Confidence 332 34444444
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0023 Score=58.03 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHhh--------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 11 RPTSIQAQAMPVAL--------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~--------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
.++..+..++.... .+.++++.||||+|||..+ ..+...+... +..|+++.- ..|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa-~aIa~~l~~~-------g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLS-NCIAKELLDR-------GKSVIYRTA-DELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEEEEH-HHHHHHH
Confidence 34555556665333 3578999999999999865 4455555542 566666543 5555543
No 242
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0039 Score=56.75 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHhhcCC----cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 11 RPTSIQAQAMPVALSGR----DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~----~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.++|||...+..+...+ ..++.||.|.|||..+.. +...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 35899999999998543 388999999999976644 4444444
No 243
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.0088 Score=46.52 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999754
No 244
>PRK06921 hypothetical protein; Provisional
Probab=97.08 E-value=0.01 Score=52.36 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
++++++.|++|+|||..+ ..++..+.... +..++++.. ..+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~~------g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRKK------GVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhhc------CceEEEEEH-HHHHHH
Confidence 567999999999999754 44555554421 455666554 444443
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.04 E-value=0.013 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
++|.|+||+|||++. ..++..+.
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 359999999999875 44555554
No 246
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0031 Score=57.11 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=27.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
.+.|+.+|+|+|||..+-+..-.. +..+.-+..+.+=+.++.+.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-----------~~~f~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-----------NAAFEALSAVTSGVKDLREIIE 94 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-----------CCceEEeccccccHHHHHHHHH
Confidence 369999999999997654322221 4445555555554444444333
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=97.00 E-value=0.0027 Score=54.81 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCccEEEEcccchhccCC-CHHHHHHHHhhCCC-CCcEEEEEeecchH
Q 013962 136 SRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVE 181 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SAT~~~~ 181 (433)
.+.+++|+||+|.+.... +...+..++..... +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 357899999999875322 23344444444432 34566777765433
No 248
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.99 E-value=0.0051 Score=62.40 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.|++-|.+++... ..+++|.|..|||||.+.+.-+...+.... .....+++|+.|+..+.++.+++.+..+
T Consensus 1 ~Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3789999998753 468999999999999887666665553321 1246789999999999999999988654
No 249
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.98 E-value=0.0095 Score=65.20 Aligned_cols=127 Identities=18% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
..+++.|.+|+..++.. +-++|.+..|+|||.+ +-.++..+.... ...+..++.++||-.-+.++.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~e----~-- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMRS----A-- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh---cccCceEEEECCcHHHHHHHHh----c--
Confidence 36899999999999975 4589999999999964 444444432110 1125678999999876664432 1
Q ss_pred cCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHH----HcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 88 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL----QQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~----~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
++. -.|..+|+... .........-+++||||+-++. ...+..++.
T Consensus 1036 ---Gi~------------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1036 ---GVD------------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred ---Ccc------------------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 111 11222222111 0111112335799999999764 334566666
Q ss_pred hCCC-CCcEEEEEee
Q 013962 164 NLPD-KHQTLLFSAT 177 (433)
Q Consensus 164 ~~~~-~~~~i~~SAT 177 (433)
..+. ..++|++.-+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 5553 5777777655
No 250
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.97 E-value=0.008 Score=57.74 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=28.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+.+++.||+|+|||..+ ..+...+.+.. .+..++++.. ..+..+..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-----PNAKVVYVTS-EKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHH
Confidence 35899999999999754 44555554421 1455666644 45554443
No 251
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.012 Score=53.03 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHhhc----CC---cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 9 YTRPTSIQAQAMPVALS----GR---DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~----~~---~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
++.++|+|..++..+.. ++ ..++.||.|.||+..+.. +...++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 46789999999988873 32 388999999999976644 4555544
No 252
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0079 Score=49.02 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=57.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+-.++.+|+.||||...+..+-.+-.. +.++++..|-..-. + +...+.-..|..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~R----------~----~~~~V~Sr~G~~---- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDTR----------Y----GVGKVSSRIGLS---- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEecccccc----------c----ccceeeeccCCc----
Confidence 346889999999997544433333222 88899999963321 1 111111111111
Q ss_pred HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHh
Q 013962 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 163 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~ 163 (433)
..-++|-.+..+++.+........ .++|.||||+-+ +...-..+..+..
T Consensus 59 ------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad 107 (201)
T COG1435 59 ------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELAD 107 (201)
T ss_pred ------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHh
Confidence 124556666677777665433222 789999999954 3323334444443
No 253
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.0067 Score=52.61 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=23.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
..+++.||+|+|||..+. .+...+... +..++++.-
T Consensus 46 ~~l~l~Gp~G~GKThLl~-a~~~~~~~~-------~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH-AACAELSQR-------GRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEEH
Confidence 568999999999997543 334443332 556666644
No 254
>PLN03025 replication factor C subunit; Provisional
Probab=96.93 E-value=0.011 Score=53.94 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=23.4
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEE
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 174 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (433)
..+++|+||+|.+... ....+...++..++..++++.
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEE
Confidence 4789999999988643 234455555555545554443
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.93 E-value=0.0068 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+..+++.||+|+|||..+. .+....
T Consensus 38 ~~~lll~G~~G~GKT~la~-~~~~~~ 62 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ-AACAAA 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997653 333333
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=96.89 E-value=0.0039 Score=54.83 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=29.3
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 22 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
.+..+.++++.||+|+|||..+.... ..+... +..++++.. ..|..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~-~~a~~~-------G~~v~~~~~-~~l~~ 143 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALG-YEAVRA-------GIKVRFTTA-ADLLL 143 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeH-HHHHH
Confidence 34567889999999999997654433 222221 666766642 34444
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.89 E-value=0.0051 Score=58.48 Aligned_cols=107 Identities=14% Similarity=0.271 Sum_probs=58.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+.+++.||+|+|||..+ ..+...+... +.+++++.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~---------------~------ 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS---------------G------ 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc---------------c------
Confidence 35899999999999753 4555555442 566777654 4444433222211 0
Q ss_pred HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhC-CCCCcEEEEEeecchHHH
Q 013962 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIE 183 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~ 183 (433)
..+.|... +.+.+++++||+|.+.... ....+..++..+ ....++|+.|.++|..+.
T Consensus 192 -------------~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 192 -------------EMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred -------------hHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 01112111 2357899999999876432 233444444333 234556655555555544
No 258
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.87 E-value=0.0099 Score=56.34 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=26.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
.+++.||+|+|||..+ ..+...+.+.. .+..++++.. ..+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEEH-HHHHH
Confidence 4789999999999754 45555554421 2456777643 34433
No 259
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.86 E-value=0.0066 Score=55.48 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=25.6
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..++|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998833323455666666666666655544
No 260
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.86 E-value=0.0067 Score=56.04 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=25.1
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEe
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 176 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 176 (433)
...++||+||+|.+... ....+..++...+...++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987542 23345556665555565555443
No 261
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.81 E-value=0.035 Score=54.44 Aligned_cols=155 Identities=12% Similarity=0.129 Sum_probs=85.5
Q ss_pred cCCCCCCcHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVAL---SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
.++-.-|.|.=.+-++.+. ..+-.++.+|=|-|||.+..+.+. .+... .+.+++|.+|...-+.+.++.+
T Consensus 164 ~~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 164 AFNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred hcCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHH
Confidence 3444555665555555555 446688899999999976544443 33321 1678999999999999999988
Q ss_pred HHHhccCC------C-ceEEEEECCCCH---HHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC
Q 013962 83 KALSRSLD------S-FKTAIVVGGTNI---AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 83 ~~~~~~~~------~-~~~~~~~~~~~~---~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~ 152 (433)
...+..+. . ..+....|+... ........++..|.+.+.. .+...-.+++++|+|||+-+..
T Consensus 237 ~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 237 ETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-
Confidence 88876321 1 111222222100 0000000011223332211 1111213478999999997754
Q ss_pred CCHHHHHHHHhhCC-CCCcEEEEEeec
Q 013962 153 GFEPQIREVMQNLP-DKHQTLLFSATM 178 (433)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~i~~SAT~ 178 (433)
..+..++-.+. ...+++++|.+-
T Consensus 309 ---~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 ---GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred ---HHHHHHHHHHccCCCceEEEeCCC
Confidence 34555554443 355667777665
No 262
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.80 E-value=0.0079 Score=57.27 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 15 IQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 15 ~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|.+-=+.+... +-++|+|..|||||.+++.-++..++.....-. ++.+||+.|++.+..=+.+.+-.+.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhchhhc
Confidence 355544445533 448999999999999999888877776533222 4559999999998876665555543
No 263
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.79 E-value=0.0077 Score=51.56 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=60.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 107 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.+++.||+|+|||.. +..+...+.+.. ++.+++++.. ..........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~-~~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSA-EEFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEH-HHHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecH-HHHHHHHHHHHHc-----------------------
Confidence 389999999999974 455555555432 2667777765 3444433333322
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCC-CCCcEEEEEeecchHH
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEI 182 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~i~~SAT~~~~~ 182 (433)
...+.|.+. +.+.++++||++|.+.+.. ....+..++..+. .+.++|+.|..+|..+
T Consensus 86 -----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 112223222 2358899999999886532 2344445554442 3556776666766543
No 264
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.02 Score=54.64 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=25.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
+.+++.||+|+|||..+ ..+...+.+.. .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH
Confidence 35899999999999754 44555554421 1456777764
No 265
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.77 E-value=0.0092 Score=51.60 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=24.3
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCc-EEEEEeecc
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ-TLLFSATMP 179 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~~SAT~~ 179 (433)
..++||+||+|.+... ....+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3668999999987543 23344445544333333 466666654
No 266
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0085 Score=57.19 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=31.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+.+++.|++|+|||..+ ..+...+.... .+.+++++.+ ..+..+....+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHH
Confidence 34889999999999643 45555544321 2566777665 556555544443
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.74 E-value=0.013 Score=65.86 Aligned_cols=62 Identities=29% Similarity=0.321 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHH---HHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFT---IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~---~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
..+++.|.+|+..++.+ +-++|.++.|+|||.+.. -++... ... .+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~-~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQA-FES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHH-HHh------cCCeEEEEeChHHHHHHH
Confidence 46899999999999865 347889999999996531 222222 221 277899999997766554
No 268
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.0055 Score=59.74 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=58.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 107 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.++|.|++|+|||..+ ..+...+.... .+.+++++.. ..+..++...+..-
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~-----~g~~V~Yita-eef~~el~~al~~~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLY-----PGTRVRYVSS-EEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEeeH-HHHHHHHHHHHHhc----------------------
Confidence 4899999999999753 44444443311 2566666654 45555443333210
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCC-CCcEEEEEeecchHH
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEI 182 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~ 182 (433)
..+.|... +.++++|||||+|.+.... ....+..++..+.. +.++|+.|-.++..+
T Consensus 367 ------------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 367 ------------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred ------------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 01112111 2347899999999876533 23344455544433 456666555555443
No 269
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.73 E-value=0.0084 Score=61.37 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
..|+|-|.+|+... ...++|.|..|||||.+.+.-+...+.... -...++|+++-|+..+..+.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 46899999999753 467999999999999887666665554321 1135799999999999999999988754
No 270
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.72 E-value=0.005 Score=60.36 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH-HHHHHHhc
Q 013962 11 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKALSR 87 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~~~~~ 87 (433)
..+|||.+.+.++-.. +.+.+..++-+|||.+.+. ++.+..... ...++++.||..++.++. .++..++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999999999865 4699999999999986544 333333332 456899999999999987 56777766
Q ss_pred cCCCceEEEEE---CCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 88 SLDSFKTAIVV---GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
..+.+.-.+.. ........... ..+..+.+....+-. .+.-..++++++||++.+.
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~-f~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKR-FPGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhhee-cCCCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 55443322211 01111111111 123334443321111 1122458899999999884
No 271
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.70 E-value=0.013 Score=52.32 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=42.0
Q ss_pred ccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
+|...+..+-.+.--+.+.-+..+..+++.|++|+|||..++..+...+.. .+..+++++-- .-..++...+
T Consensus 7 ~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~E-~~~~~~~~r~ 78 (271)
T cd01122 7 ALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISLE-EPVVRTARRL 78 (271)
T ss_pred cccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEcc-cCHHHHHHHH
Confidence 344333333333323333455567789999999999997655444444332 16677777642 3344455555
Q ss_pred HHH
Q 013962 83 KAL 85 (433)
Q Consensus 83 ~~~ 85 (433)
...
T Consensus 79 ~~~ 81 (271)
T cd01122 79 LGQ 81 (271)
T ss_pred HHH
Confidence 443
No 272
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.69 E-value=0.018 Score=46.65 Aligned_cols=43 Identities=16% Similarity=0.389 Sum_probs=29.3
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
...+++||||+|.|... ....+.+.++.-+....++++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999988644 34556666666666676776666654
No 273
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.055 Score=47.63 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC-c--HHHHHHHHHHHHHHhccCCCceEEEEECCCCH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-T--RELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 103 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P-~--~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
..+.+.+++|+|||..+...+.. +... +..+.++.. + .....||...... . ++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~----~-~~~~~~------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----I-GFEVIA------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhh----c-CceEEe-------
Confidence 46899999999999765443333 3221 445555543 2 2455555433322 1 222111
Q ss_pred HHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecch-H
Q 013962 104 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPV-E 181 (433)
Q Consensus 104 ~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~-~ 181 (433)
..+++.+.+.+..- ....++++||||-+=+.... ..-..+..++....+...++.++||... .
T Consensus 136 --------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 --------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred --------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 12344443333221 11235789999999765422 1233445555555555557789998754 5
Q ss_pred HHHHHHHh
Q 013962 182 IEALAQEY 189 (433)
Q Consensus 182 ~~~~~~~~ 189 (433)
....+..|
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 55666655
No 274
>PRK04195 replication factor C large subunit; Provisional
Probab=96.61 E-value=0.018 Score=55.77 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999754
No 275
>PTZ00293 thymidine kinase; Provisional
Probab=96.59 E-value=0.014 Score=48.81 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
|.-.++.+|++||||.-.+..+..+... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEecc
Confidence 3446889999999996544443333332 77889998864
No 276
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.58 E-value=0.0043 Score=52.12 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
++++.||+|.|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 69999999999997543
No 277
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.58 E-value=0.018 Score=54.76 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=86.6
Q ss_pred CCcHHHHHHHHHhhc------C----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVALS------G----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~------~----~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
.+-|||.-++..+.. + +.++|..|-+-|||..+...++..++-.. .++..+.+++|+..-+.+.+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~----~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW----RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh----hcCCcEEEEeccHHHHHHhhH
Confidence 578999999999982 1 24899999999999765533333333221 248889999999999999888
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCc--EEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccCCCHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVS--IVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
.++.......++.... .. .... |.+.-.......+.... ..-.+..+.|+||.|.+.+.. .
T Consensus 137 ~ar~mv~~~~~l~~~~------------~~-q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 137 PARDMVKRDDDLRDLC------------NV-QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred HHHHHHHhCcchhhhh------------cc-ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--H
Confidence 8887765433111111 00 1111 22211122222222222 222346799999999876642 4
Q ss_pred HHHHHHhhC--CCCCcEEEEEe
Q 013962 157 QIREVMQNL--PDKHQTLLFSA 176 (433)
Q Consensus 157 ~~~~~~~~~--~~~~~~i~~SA 176 (433)
.+..+..-+ .++.+++..|.
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHhhhccCcCceEEEEec
Confidence 444444433 24556666665
No 278
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.014 Score=54.05 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=30.9
Q ss_pred CccEEEEcccchhccCC-CHHHHHHHHhhCCC-CCcEEEEEeecchHHH
Q 013962 137 RVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 183 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~ 183 (433)
++++++||.++.+.... ....+-.++..+.. +.|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 58899999999877542 44555555555543 3477777766765544
No 279
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.57 E-value=0.025 Score=50.31 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHhh----cCC-cEEEEcCCCChHHHHH
Q 013962 12 PTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAF 43 (433)
Q Consensus 12 ~~~~Q~~~i~~~~----~~~-~~l~~~~TGsGKT~~~ 43 (433)
+++.+.+++..+. .+. .+++.||+|+|||..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 5666777777664 223 5889999999999654
No 280
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.55 E-value=0.016 Score=51.04 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=61.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhh-cCCC---CCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCC
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVA-QTPV---GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 102 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~---~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.++++.|+||.|||.++ ..+.. ++.. ....-+.+++-+|...=....+..+-..+.- .+. ..+ .
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga--P~~----~~~-~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA--PYR----PRD-R 129 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc--ccC----CCC-C
Confidence 47999999999999743 22222 1111 1112356666777776666666666554321 010 011 1
Q ss_pred HHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCH--HHHHHHHhhCCCCC--cEEEEEeec
Q 013962 103 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKH--QTLLFSATM 178 (433)
Q Consensus 103 ~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~~~~~~~~--~~i~~SAT~ 178 (433)
...... .....+.. -+.+++||||+|+++..+.. ..+...++.+.+.. .+| .-+|.
T Consensus 130 ~~~~~~--------------~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV-~vGt~ 189 (302)
T PF05621_consen 130 VAKLEQ--------------QVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV-GVGTR 189 (302)
T ss_pred HHHHHH--------------HHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE-EeccH
Confidence 111000 11123332 23789999999998765432 23444445554333 344 33564
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.018 Score=55.03 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~ 45 (433)
+..|+.||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 3589999999999987644
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.024 Score=54.91 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
.+++++||||+|.+.... ...+.+.++.-++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 457899999999886542 233444555555555556554
No 283
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.51 E-value=0.0075 Score=54.44 Aligned_cols=57 Identities=30% Similarity=0.342 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 12 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 12 ~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+++.|.+.+..+. .+.+++++|+||||||. ++-.++..+.... .+.+++.+=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC-----CCceEEEecCCccc
Confidence 5667777766555 55689999999999995 4455655553321 25567777666666
No 284
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.023 Score=56.60 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..++++||||+|.|.... ...+.++++.-+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 457899999999886543 233444555444455445444
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.087 Score=49.89 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=31.9
Q ss_pred ccEEEEcccchhcc-CCCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh
Q 013962 138 VSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 138 ~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
.++||||.+-+... ...-..+..+.....+...++.++||........+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 48999999965432 11333455555555566667888888765555555543
No 286
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.027 Score=51.37 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 12 PTSIQAQAMPVALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~-----~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
++|||...+..+... ...++.||.|.||+..+. .+...++.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHcC
Confidence 478888888887742 248899999999998764 44445444
No 287
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.47 E-value=0.0023 Score=51.95 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=53.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHH--HHH
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--EQR 107 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 107 (433)
++.|+-|-|||.+ +-.++..+.... ..+++|.+|+.+-++..++.+..-...+ +++. ..... ...
T Consensus 1 VltA~RGRGKSa~-lGl~~a~l~~~~------~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~-----~~~~~~~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAA-LGLAAAALIQKG------KIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE-----EKKKRIGQII 67 (177)
T ss_dssp -EEE-TTSSHHHH-HHHCCCCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHH-HHHHHHHHHHhc------CceEEEecCCHHHHHHHHHHHHhhcccc-cccc-----cccccccccc
Confidence 4789999999964 333333333321 3579999999987776665554432221 1111 00000 000
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.....+..|-+..|+.+... ....+++|||||=.+. .+.+..++... ..+.+|.|..
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp -----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred ccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 01113457777777776422 1235899999999763 45666665433 3567788873
No 288
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.45 E-value=0.019 Score=54.32 Aligned_cols=145 Identities=12% Similarity=0.218 Sum_probs=81.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
-.++.+..|||||.++...++..+.... ++.+++++-|+.. |...+...+......+ ++....-.......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~-- 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSME-- 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccE--
Confidence 3678999999999988888887777641 2677888888875 7777777777665443 22211111110000
Q ss_pred HHHhhC-CCcEEEecc-HHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC--CCCcEEEEEeecchHH
Q 013962 107 RSELRG-GVSIVVATP-GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKHQTLLFSATMPVEI 182 (433)
Q Consensus 107 ~~~~~~-~~~Ivv~T~-~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~~ 182 (433)
-...+ +..|++..- +...+. .....+.++.+|||..+... .+..+...+. .....+.+|.||....
T Consensus 75 -i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 -IKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred -EEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 00111 334555443 211111 11233689999999987433 4444444443 2222488999997543
Q ss_pred HHHHHHhc
Q 013962 183 EALAQEYL 190 (433)
Q Consensus 183 ~~~~~~~~ 190 (433)
.-....+.
T Consensus 145 ~w~~~~f~ 152 (396)
T TIGR01547 145 HWVKKRFI 152 (396)
T ss_pred cHHHHHHH
Confidence 33444443
No 289
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.021 Score=56.36 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
+...++|||||+|.+.... ...+.+.++.-++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4568899999999886432 233444455545555556554
No 290
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.42 E-value=0.028 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.+++|.||+|+|||.++ ..++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 46999999999999754 445554433
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.39 E-value=0.015 Score=50.58 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=37.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+..++|.+++|+|||..++..+...+.. +..+++++- .+-..|..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHh
Confidence 34569999999999998766655555432 777888884 45566677766654
No 292
>PF13173 AAA_14: AAA domain
Probab=96.39 E-value=0.047 Score=42.27 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=24.5
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
.-.+|++||+|.+.+ +...+..+.... ++.+++ +|+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii-~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKII-LTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEE-EEccc
Confidence 456899999998865 466666666644 344444 44443
No 293
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.39 E-value=0.0065 Score=50.05 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=29.8
Q ss_pred cCCCCCCcHHHHHHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~------~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
.+.|......+...+..+ .+++++++.||+|+|||..+.. +...+... +..++++. ...|..+
T Consensus 21 ~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 21 NFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEEE-HHHHHHH
T ss_pred cccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEee-cCceecc
Confidence 344444444444444444 3567899999999999987644 44444442 66666654 4455554
No 294
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.042 Score=55.20 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCC-ceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG-PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~-~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+-+.+.+|||+|||.++...+....... + +++.++..-..- .-..+.++.+.... ++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-------G~kkV~lit~Dt~R-igA~eQL~~~a~~~-gvpv----------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE-------GADQLALLTTDSFR-IGALEQLRIYGRIL-GVPV----------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc-------CCCeEEEecCcccc-hHHHHHHHHHHHhC-CCCc-----------
Confidence 4578999999999987654443332222 3 345444432111 00123344443322 1211
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchH-HH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVE-IE 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~ 183 (433)
.++.+|+.+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.++||.... +.
T Consensus 246 ----------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ----------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ----------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 123356666555543 345678888888765422 12223333333334455677888887533 33
Q ss_pred HHHHHh
Q 013962 184 ALAQEY 189 (433)
Q Consensus 184 ~~~~~~ 189 (433)
+....|
T Consensus 312 ~i~~~f 317 (767)
T PRK14723 312 EVVHAY 317 (767)
T ss_pred HHHHHH
Confidence 344444
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.36 E-value=0.02 Score=51.18 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=16.3
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPM 47 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~ 47 (433)
+.+++.+|||+|||.++...+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999997754433
No 296
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.30 E-value=0.018 Score=50.99 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||.++-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997653
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.30 E-value=0.06 Score=46.50 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=33.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
..+..+++.+++|+|||..++..+.. .... +.++++++... -..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~-------g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQN-------GYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhC-------CCcEEEEeCCC-CHHHHHHHHHHh
Confidence 34567999999999999765444433 3332 66788888543 334555555443
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.06 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMI 48 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~ 48 (433)
.++.+.+.+|||+|||.++...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999977544333
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.29 E-value=0.046 Score=51.91 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
++++.||+|+|||.++.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997653
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.28 E-value=0.044 Score=43.85 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=72.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHHhccCCCceEEEEECCC-----
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKALSRSLDSFKTAIVVGGT----- 101 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~----- 101 (433)
-+.|..++|.|||.+++..++..+.+ |.+++++-=.+.-... -...++++ +++.......+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~--------g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH--------GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCC
Confidence 36678889999999887777766554 7788884322221000 01122322 333333222111
Q ss_pred CHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 102 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 102 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
+..+.... ....+..... ......+++||+||+-...+.+ -...+..+++..+...-+|+.+-.+|
T Consensus 72 ~~~~~~~~-----------a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 72 NDEEDIAA-----------AAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred ChHHHHHH-----------HHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11110000 0111121111 1223568999999999887665 34567777777777766776666677
Q ss_pred hHHHHHHH
Q 013962 180 VEIEALAQ 187 (433)
Q Consensus 180 ~~~~~~~~ 187 (433)
+.+.+.+.
T Consensus 140 ~~l~e~AD 147 (159)
T cd00561 140 KELIEAAD 147 (159)
T ss_pred HHHHHhCc
Confidence 66555443
No 301
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.0075 Score=53.75 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=45.8
Q ss_pred cCCCCCCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
.-.|..+++-|...+..+...+ ++++++.||||||.. +-.+...+. ...+++.+=.+.+|.-
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql 214 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQL 214 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhcc
Confidence 3457788999999998888665 899999999999963 333333322 2558898888888744
No 302
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.26 E-value=0.041 Score=55.62 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecchH
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE 181 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 181 (433)
...++|+||+|++... ....++..+. ..+++++++|-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 3568999999987432 2233333333 35577777775443
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.23 E-value=0.055 Score=50.18 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=31.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.-+++.+++|+|||..++. ++..+... +.+++++.... -..|+......+
T Consensus 83 slvLI~G~pG~GKStLllq-~a~~~a~~-------g~~VlYvs~EE-s~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQ-VAARLAKR-------GGKVLYVSGEE-SPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEECCc-CHHHHHHHHHHc
Confidence 4589999999999975543 33333332 56788887643 345565555544
No 304
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.14 Score=47.50 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhh----c---CCcEEEEcCCCChHHHHHHHHHHHHHhhc
Q 013962 13 TSIQAQAMPVAL----S---GRDLLGCAETGSGKTAAFTIPMIQHCVAQ 54 (433)
Q Consensus 13 ~~~Q~~~i~~~~----~---~~~~l~~~~TGsGKT~~~~~~~~~~~~~~ 54 (433)
|.-|.+.+..++ . ..++++.|+||+|||.+. ..++..+...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 445555554333 2 246999999999999764 5566666553
No 305
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.043 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=16.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+++.||.|+|||.++. .++..+
T Consensus 41 ~L~~Gp~G~GKTtla~-~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIAR-LLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHH-HHHHHh
Confidence 6899999999997654 344444
No 306
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.18 E-value=0.037 Score=52.86 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+.-+++.+++|+|||...+..+.. ... .+.+++++.-. +-..|+......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~-------~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA-------AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh-------cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 345899999999999755444333 322 16678888864 4445666665554
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.18 E-value=0.11 Score=48.76 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=33.3
Q ss_pred CccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh
Q 013962 137 RVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
.+++||||=+-++... ..-..+..+.....+...++.++||........+..|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 4788999988765422 1334455555555556667888888776655555555
No 308
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.018 Score=51.77 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 12 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 12 ~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+++.|.+.+..+. .+.+++++|+||||||. ++..++..+.... ...+++.+=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccC-----CCceEEEECCchhh
Confidence 4445555555444 56789999999999995 4455555543311 25677777777676
No 309
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.019 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+++.||.|+|||.++.. ++..+
T Consensus 43 ~Lf~GP~GtGKTTlAri-LAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI-LAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHH-HHHhc
Confidence 79999999999976543 44443
No 310
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.16 E-value=0.021 Score=49.33 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=62.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCC-CHHHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCc
Q 013962 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRV 138 (433)
Q Consensus 61 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 138 (433)
..+.+|||+..---+-.+.+.++.+-. .+..++-+..-. ..+++...+. ...+|.|+||+++..++..+...+.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 467889999887777777777776631 123333333332 4455555555 468999999999999999999999999
Q ss_pred cEEEEcccch
Q 013962 139 SFVILDEADR 148 (433)
Q Consensus 139 ~~vIiDE~h~ 148 (433)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998873
No 311
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.052 Score=53.41 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=23.5
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
...+++||||+|++.... ...+.+++..-+....+|+.|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 457899999999886432 334444555444444455444
No 312
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.14 E-value=0.033 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=18.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.+++|.||+|+|||.++ ..++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999754 44555543
No 313
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.056 Score=48.99 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 12 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 12 ~~~~Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
++|||+..+..+. +++ ..++.||.|.||+..+.. +...++.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 4677777776665 333 478999999999976644 4455444
No 314
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.12 E-value=0.014 Score=48.81 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
..+.+.||+|||+.|.+. ....++..++...+..++.+...+.
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcch
Confidence 366889999999988753 4556666666666666666554443
No 315
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.12 E-value=0.024 Score=46.60 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=76.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
....+++..++|.|||.+++-.++..+.. |.+|+++-=.+.-.. ..+...+ ..++++.......+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~--~GE~~~l-~~l~~v~~~~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWS--TGERNLL-EFGGGVEFHVMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCc--cCHHHHH-hcCCCcEEEECCCCCccc
Confidence 55689999999999998887777766554 778888764332211 1111111 111233332211111100
Q ss_pred HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC--HHHHHHHHhhCCCCCcEEEEEeecchHH
Q 013962 105 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEI 182 (433)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 182 (433)
. ....--.......+..... ...-..+++||+||+-...+.++ ...+..++...|+..-+|+..-.+|+.+
T Consensus 90 ~------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 90 T------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred C------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 0 0000000011111222211 12235689999999998887773 4566777777666665665555566555
Q ss_pred HHHHH
Q 013962 183 EALAQ 187 (433)
Q Consensus 183 ~~~~~ 187 (433)
.+.+.
T Consensus 163 ie~AD 167 (191)
T PRK05986 163 IEAAD 167 (191)
T ss_pred HHhCc
Confidence 55444
No 316
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.032 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+++.||+|+|||.++.. +...+
T Consensus 39 ~Lf~GPpGtGKTTlA~~-lA~~l 60 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI-LAKSL 60 (472)
T ss_pred EEEECCCCCCHHHHHHH-HHHHh
Confidence 69999999999976543 34433
No 317
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.12 E-value=0.015 Score=52.69 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 12 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 12 ~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+++.|.+.+..+. .+.++++.|+||||||. ++..++..+... +...+++++-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 4567777776544 66789999999999995 455555544321 125567777777665
No 318
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.06 Score=52.92 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
..++++||||+|+|....+ ..+.+.++.-+....+|+.|.-+
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCCh
Confidence 4688999999998864322 22333333334445555555433
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.09 E-value=0.047 Score=47.71 Aligned_cols=41 Identities=22% Similarity=0.097 Sum_probs=28.7
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
+..|.-++|.|++|+|||..++..+...+... +..+++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 34556789999999999976555555544432 667888884
No 320
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.064 Score=53.23 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....+++||||+|.+.... ...+.+.+..-+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999875432 233444555445555555554
No 321
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.07 E-value=0.077 Score=45.91 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
.+..+++.+++|+|||..+...+...+ .. +..+++++. .....++.+.+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~-------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-RD-------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-hc-------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 456799999999999976554444333 21 566777764 3334455444444
No 322
>PRK06904 replicative DNA helicase; Validated
Probab=96.05 E-value=0.15 Score=49.01 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=61.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEE-EC-C
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VG-G 100 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~-~ 100 (433)
+..|.-++|.|.||.|||..++-.+....... +..+++++. .--..|+..++-..... +....+ .| .
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~-------g~~Vl~fSl-EMs~~ql~~Rlla~~s~---v~~~~i~~g~~ 286 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMAS-------EKPVLVFSL-EMPAEQIMMRMLASLSR---VDQTKIRTGQN 286 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-------CCeEEEEec-cCCHHHHHHHHHHhhCC---CCHHHhccCCC
Confidence 33445588899999999975543333333221 566777764 45566666665544322 222111 23 2
Q ss_pred CCHHHHHH------HhhCCCcEEE-----eccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 101 TNIAEQRS------ELRGGVSIVV-----ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 101 ~~~~~~~~------~~~~~~~Ivv-----~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
.+..++.. .+.....+.| .|+..+....++.......+++||||=.|.+..
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 33333322 1222344555 244455433322111123588999999997753
No 323
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.04 E-value=0.023 Score=57.53 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCeEEEEEeccccHHHHHHHHHH----CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 316 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~ 316 (433)
+.++++.+|++.-+...++.+++ .++.+..++|+++..+|..+++...+|+.+|+|+|. .+...+.++++.+||.
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 45699999999998887777654 368999999999999999999999999999999996 4566778888888886
Q ss_pred cc
Q 013962 317 LD 318 (433)
Q Consensus 317 ~~ 318 (433)
-.
T Consensus 390 DE 391 (681)
T PRK10917 390 DE 391 (681)
T ss_pred ec
Confidence 44
No 324
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.12 Score=45.06 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=37.0
Q ss_pred HHhhcCC-----cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 21 PVALSGR-----DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 21 ~~~~~~~-----~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+++..|+ .+++.+|+|+||+..+-.. ... .....+-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAV-ATE-----------AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAV-ATE-----------ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHH-Hhh-----------cCCceEEeehHHHHHHHhccHHHHH
Confidence 4445554 3899999999999754322 222 2247888888999998877666654
No 325
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.97 E-value=0.027 Score=50.81 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
++.+++.||+|+|||..+ ..+...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 357999999999999865 445555544
No 326
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.97 E-value=0.059 Score=52.71 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=80.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC-CCceEEEEECCCCHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIAE 105 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 105 (433)
+..++..|=-.|||.+.. +++..++... .|..+++++|....++..++++...++.. +...+....| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I-- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI-- 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--
Confidence 558889999999998655 5555444321 28899999999999999999999876542 1111212222 110
Q ss_pred HHHHhhCC--CcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CCCCcEEEEEeecch
Q 013962 106 QRSELRGG--VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPV 180 (433)
Q Consensus 106 ~~~~~~~~--~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~ 180 (433)
.-...++ ..|.+.+. ...+...=..++++|+|||+-+... .+..++-.+ ..++++|++|.|-..
T Consensus 326 -~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 -SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred -EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 0001111 24444421 0111122235899999999977543 444444332 247889999988643
No 327
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.085 Score=48.04 Aligned_cols=41 Identities=17% Similarity=0.023 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 12 PTSIQAQAMPVALSG-----RDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~-----~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
++|+|...+..+... ...++.||.|.|||..+. .+...++.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~-~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR-FAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH-HHHHHHcC
Confidence 478999999888732 248899999999997654 34444443
No 328
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.042 Score=56.31 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=25.9
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
.+++++||||+|+|... -...+.++++..+....+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 46889999999998654 2334555556555555556554
No 329
>PRK06620 hypothetical protein; Validated
Probab=95.93 E-value=0.02 Score=48.82 Aligned_cols=17 Identities=35% Similarity=0.165 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44899999999999754
No 330
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.93 E-value=0.08 Score=45.97 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..+++.+++|+|||..+...+...+.+ +.+++++.-... ..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 4568999999999997665544444332 777888876544 34566666654
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.079 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 11 RPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.++|+|...+..+. +++ ..++.||.|.||+..+. .+...++.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~-~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE-LFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 46788888887776 232 48999999999997654 44444444
No 332
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.93 E-value=0.017 Score=54.32 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 12 PTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~--~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
+.+.|.+.+..+++... +++.||||||||.+ +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 47889999988886544 88899999999965 5666666544
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.92 E-value=0.23 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCccEEEEcccchhccC-CCHHHHHHHHhhCC------CCCcEEEEEeecchHHHHHHHHhc
Q 013962 136 SRVSFVILDEADRMLDM-GFEPQIREVMQNLP------DKHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~------~~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
.++++||||=+-+.... ..-..+..+....+ +...++.++||...........+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45789999988765421 12334555544443 455678888887655445554443
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=95.92 E-value=0.039 Score=49.34 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~ 45 (433)
.++++.||+|+|||.++-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999987643
No 335
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.061 Score=52.90 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..+.+++||||+|.+... -...+.+.+..-+....+|+.|
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 356889999999988644 2233444455444455555555
No 336
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.89 E-value=0.07 Score=50.95 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
++-+.+.||||+|||.+....+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3458899999999998765444333
No 337
>PRK08840 replicative DNA helicase; Provisional
Probab=95.89 E-value=0.15 Score=48.94 Aligned_cols=132 Identities=12% Similarity=0.032 Sum_probs=65.7
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
|+.+-.+---..+.-+..+.-+++.|.||.|||..++-.+......+ +..+++++.- --..|+..++-....
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-------~~~v~~fSlE-Ms~~ql~~Rlla~~s 270 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-------DKPVLIFSLE-MPAEQLMMRMLASLS 270 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-------CCeEEEEecc-CCHHHHHHHHHHhhC
Confidence 33443333333344444455688999999999976644444433232 5667777643 445556655544322
Q ss_pred cCCCceEEE-EECCCCHHHHHH------HhhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 88 SLDSFKTAI-VVGGTNIAEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
. +...- ..|..+..++.. .+.....+.|- |...+....++-......+++||||=.|.+.
T Consensus 271 ~---v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 271 R---VDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred C---CCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2 11111 123333333322 12123345552 3334432222211112348899999999775
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.88 E-value=0.14 Score=46.78 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=24.0
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
...+|++||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987543 2334555555555555555544
No 339
>PHA00350 putative assembly protein
Probab=95.86 E-value=0.092 Score=48.71 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=28.0
Q ss_pred CccEEEEcccchhccCCC-----------------------HHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 137 RVSFVILDEADRMLDMGF-----------------------EPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~-----------------------~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.=.+|||||||.+..... ...+..+..+.+.+.-++++|-.+.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~ 146 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR 146 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH
Confidence 346999999998864321 1234444445556677888887764
No 340
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.84 E-value=0.042 Score=48.56 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=70.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEE-CCCC
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV-GGTN 102 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (433)
..+.=++|.|.||.|||..++-.+...+... +..+++++.-- -..++..++-...... ....+. +...
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm-~~~~l~~R~la~~s~v---~~~~i~~g~l~ 85 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEM-SEEELAARLLARLSGV---PYNKIRSGDLS 85 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS--HHHHHHHHHHHHHTS---THHHHHCCGCH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCC-CHHHHHHHHHHHhhcc---hhhhhhccccC
Confidence 3445689999999999976665555554442 57788888632 2233443333332211 111111 2222
Q ss_pred HHHHHH------HhhCCCcEEE-e----ccHHHHHHHHcCCCCCCCccEEEEcccchhccC----CCHHHHHHHHhhCC-
Q 013962 103 IAEQRS------ELRGGVSIVV-A----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM----GFEPQIREVMQNLP- 166 (433)
Q Consensus 103 ~~~~~~------~~~~~~~Ivv-~----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~----~~~~~~~~~~~~~~- 166 (433)
..+... .+. ...+.+ . |++.+...+..-......+++||||=.|.+... +....+..+...++
T Consensus 86 ~~e~~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~ 164 (259)
T PF03796_consen 86 DEEFERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKA 164 (259)
T ss_dssp HHHHHHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 222211 122 233443 2 344554443322122256889999999987763 23344444433332
Q ss_pred ----CCCcEEEEEeec
Q 013962 167 ----DKHQTLLFSATM 178 (433)
Q Consensus 167 ----~~~~~i~~SAT~ 178 (433)
-+..++++|..-
T Consensus 165 lA~~~~i~vi~~sQln 180 (259)
T PF03796_consen 165 LAKELNIPVIALSQLN 180 (259)
T ss_dssp HHHHHTSEEEEEEEBS
T ss_pred HHHHcCCeEEEccccC
Confidence 134556555543
No 341
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.83 E-value=0.079 Score=50.54 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=58.7
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE-EECCC
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGT 101 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (433)
+..|.-++|.|+||+|||..++..+....... +..+++++. ..-..|+..++-.... ++.... ..|..
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fSl-Em~~~~l~~Rl~~~~~---~v~~~~~~~~~l 259 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFSL-EMSAEQLGERLLASKS---GINTGNIRTGRF 259 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC-CCCHHHHHHHHHHHHc---CCCHHHHhcCCC
Confidence 33455689999999999976554443443232 666777763 3334444444433221 121111 12333
Q ss_pred CHHHHHHH-----hhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 102 NIAEQRSE-----LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 102 ~~~~~~~~-----~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
+..++... ...+.++.|. |.+.+.....+-......+++||||=.|.+..
T Consensus 260 ~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 260 NDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 32222111 1123345552 33344333332111122588999999987753
No 342
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.82 E-value=0.031 Score=52.08 Aligned_cols=66 Identities=18% Similarity=0.043 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 14 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 14 ~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
..|.++.-..-.|.- -|.+=.|||||.+.++.+......+ +..++++.+=|+.|+.++.+.+.+|+
T Consensus 165 ~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~kn------Pd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 165 TDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKN------PDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred chhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCC------CCceEEEEeehHHHHHHHHHHHHHHH
Confidence 345555544444444 6778899999986555544433332 37889999999999999998888876
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.14 Score=47.15 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC-c-H-HHHHHHHHHHHHHhccCCCceEEEEECCCC
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-T-R-ELAQQIEKEVKALSRSLDSFKTAIVVGGTN 102 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P-~-~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
++.+++.+|+|+|||.++...+ ..+... +.++.++.- + + .-..||. .+.... ++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA-~~l~~~-------g~~V~lItaDtyR~gAveQLk----~yae~l-gvpv-------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG-WQLLKQ-------NRTVGFITTDTFRSGAVEQFQ----GYADKL-DVEL-------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCCccCccHHHHHH----HHhhcC-CCCE--------
Confidence 4458899999999997654443 333332 455555543 2 2 2234443 333221 1211
Q ss_pred HHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 103 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 103 ~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.+..+|+.+.+.+.... ...+.++|+||=+-+.... ..-..+..+.....+..-++.+|||..
T Consensus 265 -------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 265 -------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 11234555544333211 1234788999988664321 122334444444443333455666544
No 344
>PRK08006 replicative DNA helicase; Provisional
Probab=95.81 E-value=0.2 Score=48.16 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=60.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEE-ECCCC
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VGGTN 102 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (433)
..|.-++|.|.+|.|||..++-.+....... +..++|++. .--..|+..++-..... +....+ .|..+
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a~~~-------g~~V~~fSl-EM~~~ql~~Rlla~~~~---v~~~~i~~~~l~ 290 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAAMLQ-------DKPVLIFSL-EMPGEQIMMRMLASLSR---VDQTRIRTGQLD 290 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEec-cCCHHHHHHHHHHHhcC---CCHHHhhcCCCC
Confidence 3445588899999999976554444433332 566777764 34455565555543322 222111 23334
Q ss_pred HHHHHH------HhhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 103 IAEQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 103 ~~~~~~------~~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
..++.. .+.....+.|- |+..+....++-......+++||||=.|.+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 443322 12133455553 4444433332211112358899999999775
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.15 Score=47.63 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCccEEEEcccchhcc-CCCHHHHHHHHhhCC---CCCcEEEEEeecchH-HHHHHHHh
Q 013962 136 SRVSFVILDEADRMLD-MGFEPQIREVMQNLP---DKHQTLLFSATMPVE-IEALAQEY 189 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~-~~~~~~~~ 189 (433)
.+.++|+||=+-+... ...-..+..++.... +...++.++||.... .......|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 4578999997665421 112334445554432 234578889998764 33333333
No 346
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.077 Score=51.67 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..+..++||||+|++... -...+.+.++.-++...+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 356789999999988643 2234445555544455555554
No 347
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.054 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....+||+|||+.|... ....+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 56899999999988642 2344444444444455455444
No 348
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.13 Score=48.36 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
++.+.+.||||+|||.+....+........ .....++.+.+.-. -..+.+..+...+ ++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-----~~~v~~i~~d~~ri--galEQL~~~a~il-Gvp~~---------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG-----ADKVALLTTDSYRI--GGHEQLRIYGKLL-GVSVR---------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecCCcch--hHHHHHHHHHHHc-CCcee----------
Confidence 456899999999999765433332222211 12233444444222 1223344333322 22221
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchHH-H
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEI-E 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~-~ 183 (433)
.+.++..+...+.. +.+.++++||.+-+.... .....+..+.....+...++.++||..... .
T Consensus 253 -----------~v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 253 -----------SIKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred -----------cCCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 12233333222222 456788999987432211 012233333222223456788999976543 3
Q ss_pred HHHHHh
Q 013962 184 ALAQEY 189 (433)
Q Consensus 184 ~~~~~~ 189 (433)
.....|
T Consensus 318 ~~~~~f 323 (420)
T PRK14721 318 EVISAY 323 (420)
T ss_pred HHHHHh
Confidence 334433
No 349
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.058 Score=49.69 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEee
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
.....+|||||+|.|... -...+.+.++.-+....++++|..
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECC
Confidence 356889999999988543 233455555554445555555533
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.073 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
+|+.||.|+|||.++.+ +...+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~-lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI-LAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhc
Confidence 69999999999987644 444443
No 351
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.064 Score=49.70 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=68.5
Q ss_pred HHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCC---CCceEEEEcCcHHHHHHHHHHHHH
Q 013962 15 IQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 15 ~Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~---~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
-|.++...+. +++ ..++.||.|+||+..+ ..+...++........ .....+-+|+.-.-+.+ +..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~----i~~ 97 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR----IAA 97 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHHH----HHc
Confidence 3566655443 332 4899999999999765 4455555543211100 01222333443222221 221
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhh
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 164 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 164 (433)
...+++.......+.... .....|.|-..-.+.+.+.. ........+|||||+|.+... ....+.+.++.
T Consensus 98 --~~HPDl~~i~~~~~~~~~------~~~~~I~VdqiR~l~~~~~~-~~~~~~~kVviIDead~m~~~-aanaLLK~LEe 167 (365)
T PRK07471 98 --GAHGGLLTLERSWNEKGK------RLRTVITVDEVRELISFFGL-TAAEGGWRVVIVDTADEMNAN-AANALLKVLEE 167 (365)
T ss_pred --cCCCCeEEEecccccccc------cccccccHHHHHHHHHHhCc-CcccCCCEEEEEechHhcCHH-HHHHHHHHHhc
Confidence 223455444321111000 00123433332223332222 223356789999999987533 23344455554
Q ss_pred CCCCCcEEEEEeec
Q 013962 165 LPDKHQTLLFSATM 178 (433)
Q Consensus 165 ~~~~~~~i~~SAT~ 178 (433)
-+....+|++|..+
T Consensus 168 pp~~~~~IL~t~~~ 181 (365)
T PRK07471 168 PPARSLFLLVSHAP 181 (365)
T ss_pred CCCCeEEEEEECCc
Confidence 44445555555554
No 352
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.77 E-value=0.11 Score=51.93 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=80.1
Q ss_pred CCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 11 RPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
....-|.+.+..+++.+ -+++.|+-|=|||.+.=+.+ ..+.... ...+++|..|+.+-++.....+.+-+..
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 33444455556666543 48889999999997654444 2222211 0358999999999888777766655444
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 168 (433)
+ +.+..+...... ...........|=+.+|..-. ..-++||||||=.+ ..+.+..++..++
T Consensus 288 l-g~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~~-- 348 (758)
T COG1444 288 L-GYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRFP-- 348 (758)
T ss_pred h-CCcccccccccc--ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhcC--
Confidence 3 222111111100 000000112235555555432 11679999999876 3556666665443
Q ss_pred CcEEEEEeec
Q 013962 169 HQTLLFSATM 178 (433)
Q Consensus 169 ~~~i~~SAT~ 178 (433)
.++||.|+
T Consensus 349 --rv~~sTTI 356 (758)
T COG1444 349 --RVLFSTTI 356 (758)
T ss_pred --ceEEEeee
Confidence 68888897
No 353
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.75 E-value=0.13 Score=52.10 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=63.9
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC-CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
+.++||.+|+++.+..+.+.|++. +..+..+||+++..+|...+....+|..+|+|+|...-. ..++++..||..+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 356999999999999999999764 788999999999999999999999999999999963321 45667788776553
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.75 E-value=0.015 Score=53.08 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=29.6
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+..+.++++.|+||||||. ++..++..+.. ..+++.+=.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~--------~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTT-MSKTLISAIPP--------QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHH-HHHHHHcccCC--------CCCEEEECCCccc
Confidence 3367899999999999995 44555444322 4567777777665
No 355
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.08 Score=48.42 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 11 RPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.++|||...+..+. +++ -.++.||.|.||+..+. .+...++.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 35788888888776 232 47899999999997664 44455544
No 356
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.09 Score=49.22 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEee
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
...+++||||+|.|.... ...+.+.++.-++...+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 467899999999986432 23344444443434444444444
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.71 E-value=0.042 Score=54.82 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 124 FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 124 l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
+++.+........+.-++|+|+.|.+.+......+..+++..|++.+.+..|=+-
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 3333333333344456899999999999888888999999999999888877664
No 358
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.71 E-value=0.018 Score=49.97 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQ 49 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~ 49 (433)
++|.|+.|+|||.. +..++.
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHHH
Confidence 47899999999963 344433
No 359
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.70 E-value=0.05 Score=44.10 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=36.2
Q ss_pred CCccEEEEcccchhccCC--CHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHH
Q 013962 136 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 187 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 187 (433)
..+++||+||+-...+.+ ....+..++...|+...+|+..-.+|+.+.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 568999999999887776 3446667777777666666655556655555443
No 360
>PHA00729 NTP-binding motif containing protein
Probab=95.67 E-value=0.088 Score=44.71 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.|++|+|||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 379999999999997653
No 361
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.66 E-value=0.069 Score=50.21 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~ 44 (433)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344555667777788999999999999998653
No 362
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.64 E-value=0.064 Score=47.98 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 369999999999998763
No 363
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.64 E-value=0.14 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~ 45 (433)
..++++.||+|+|||.++-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35799999999999986543
No 364
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.12 Score=50.43 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..+.+++||||+|.+.... ...+.+.++.-+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 3567899999999886432 223444444444455555555
No 365
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.087 Score=50.91 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 16 QAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 16 Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
|..++..+. +++ .+++.||.|+|||.++-+ +...+
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~Ari-lAk~L 67 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARI-IAKAV 67 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHH-HHHHh
Confidence 555554433 343 589999999999987643 44444
No 366
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.58 E-value=0.032 Score=49.24 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+.|.+.+..++. +..+++.++||||||.+ +..++..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 46668888876664 34589999999999964 45555554
No 367
>PRK08506 replicative DNA helicase; Provisional
Probab=95.57 E-value=0.18 Score=48.70 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.|.-+++.|.||.|||..++..+.. .... +..+++++. ..-..|+..++.......+ +.. ...|..+..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~-~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~s~v~-~~~-i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALK-ALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAKTSIP-LQN-LRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHH-HHhc-------CCcEEEEeC-cCCHHHHHHHHHHHhcCCC-HHH-HhcCCCCHH
Confidence 4455899999999999765544444 3332 666777764 3455666666544332211 111 112333333
Q ss_pred HHHH------HhhCCCcEEE-----eccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 105 EQRS------ELRGGVSIVV-----ATPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 105 ~~~~------~~~~~~~Ivv-----~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
++.. .+ .+..+.| .|++.+....++.......+++||||=.+.+.
T Consensus 260 e~~~~~~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 260 EWERLSDACDEL-SKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHH-HcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 3321 12 2334554 24445543333211112358899999999775
No 368
>PRK05973 replicative DNA helicase; Provisional
Probab=95.57 E-value=0.033 Score=47.91 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
++| ..+...-+..|.-++|.|++|+|||..++..+...+.+ |.++++++-- +-..|..+++..+
T Consensus 51 ~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 51 TTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 444 23344455566779999999999998766555544432 6678887653 3356677777665
No 369
>PRK07004 replicative DNA helicase; Provisional
Probab=95.54 E-value=0.13 Score=49.44 Aligned_cols=115 Identities=12% Similarity=0.063 Sum_probs=58.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE-EECCCCH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNI 103 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (433)
.|.-++|.|.||+|||..++-.+....... +..+++++. .--..|+..++-..... +.... ..|....
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~-------~~~v~~fSl-EM~~~ql~~R~la~~~~---v~~~~i~~g~l~~ 280 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEY-------GLPVAVFSM-EMPGTQLAMRMLGSVGR---LDQHRMRTGRLTD 280 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHc-------CCeEEEEeC-CCCHHHHHHHHHHhhcC---CCHHHHhcCCCCH
Confidence 345588999999999976554443333332 566777653 34455555555432221 11111 1233333
Q ss_pred HHHHHH-----hhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 104 AEQRSE-----LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 104 ~~~~~~-----~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
.++... ...+..+.|. |+..+....++-......+++||||=.|.+.
T Consensus 281 ~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 281 EDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 333221 1123456652 3444433322211122357899999999775
No 370
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.16 Score=50.54 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 174 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (433)
..++++||||+|+|.... ...+.++++.-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999886442 23334444444444445544
No 371
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.63 Score=44.07 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=27.8
Q ss_pred CccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh
Q 013962 137 RVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
.+++||+|=+-++... ..-..+..+...+.+...++.+.|+........+..+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 3667777777654321 1223344444444444446666776655555555444
No 372
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.06 Score=54.80 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 174 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (433)
..++++||||+|+|... -...+.+++..-+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 45789999999988532 223334444443444555554
No 373
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.083 Score=47.91 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=31.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
+.+++++|+|+|||+.+ -++... -..+.+=+....|+..|.-+-.+
T Consensus 246 kgvLm~GPPGTGKTlLA-KAvATE-----------c~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA-KAVATE-----------CGTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHH-HHHHHh-----------hcCeEEEechhhhhhhhccchHH
Confidence 46999999999999854 223332 33567777777887766544444
No 374
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.39 E-value=0.045 Score=55.00 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCeEEEEEeccccHHHHHHHHHH----CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 316 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~ 316 (433)
+.++++.+|++.-+...++.+.+ .++++..++|+++..++...++...+|+.+|+|+|. .+...+++.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 35699999999999888777665 378999999999999999999999999999999995 4556778888888886
Q ss_pred ccC
Q 013962 317 LDL 319 (433)
Q Consensus 317 ~~~ 319 (433)
-..
T Consensus 364 DEa 366 (630)
T TIGR00643 364 DEQ 366 (630)
T ss_pred ech
Confidence 443
No 375
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.36 E-value=0.021 Score=52.03 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=28.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
..+.+++++|+||||||. ++-.++..+.. ..+++.+=.+.+|
T Consensus 158 ~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCcc
Confidence 367899999999999995 45555555422 5566666555554
No 376
>PHA00012 I assembly protein
Probab=95.32 E-value=0.39 Score=42.95 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCccEEEEcccchhccCC-CH----HHHHH-HHhhCCCCCcEEEEEeecchHHHHHHHHhc
Q 013962 136 SRVSFVILDEADRMLDMG-FE----PQIRE-VMQNLPDKHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~-~~----~~~~~-~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
..-.++|+||||...+.. +. ..+.+ +....+...-++++|-.+. .+...+...+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR~ll 139 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAREAL 139 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHHHhh
Confidence 456799999999887532 11 22333 4444555667788877764 4444444443
No 377
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.30 E-value=0.13 Score=54.65 Aligned_cols=44 Identities=11% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
..--+||||++|.+.+......+..++...++...+|+.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34568999999988655455677788888888888888776643
No 378
>PRK05748 replicative DNA helicase; Provisional
Probab=95.28 E-value=0.28 Score=47.23 Aligned_cols=115 Identities=8% Similarity=0.015 Sum_probs=58.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEE-EEECCCCH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTA-IVVGGTNI 103 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (433)
.|.-++|.|+||.|||..++..+....... +..+++++. ..-..|+..++...... +... ...|....
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~-------g~~v~~fSl-Ems~~~l~~R~l~~~~~---v~~~~i~~~~l~~ 270 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKT-------DKNVAIFSL-EMGAESLVMRMLCAEGN---IDAQRLRTGQLTD 270 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhC-------CCeEEEEeC-CCCHHHHHHHHHHHhcC---CCHHHhhcCCCCH
Confidence 345689999999999976554444433332 566777654 44455666665433222 1111 11233333
Q ss_pred HHHHHH-----hhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 104 AEQRSE-----LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 104 ~~~~~~-----~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
.++... ...+..+.|- |++.+...+.+-.....++++||||=.|.+.
T Consensus 271 ~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 271 DDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 332211 1123345542 3444443332211111258899999999774
No 379
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.27 E-value=0.081 Score=47.54 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
+.|+.+|+|+|||..+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 6999999999999754
No 380
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.26 E-value=0.16 Score=49.44 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC-CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
+.++||.+|++..+..+.+.|++. +..+..+||+++..+|...+....+|+.+|+|+|..+-. ..++++..||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 456999999999999999999764 678899999999999999999999999999999954222 3456777777654
No 381
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.17 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..|+.||.|+|||.++.. +...+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhc
Confidence 388999999999987644 344443
No 382
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.13 Score=50.64 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~ 45 (433)
..|+.||.|+|||.++-.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378899999999976544
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.20 E-value=0.83 Score=41.54 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCccEEEEcccchhccCC-CHHHHHHHHhhC------CCCCcEEEEEeecchHHHHHHHHhc
Q 013962 136 SRVSFVILDEADRMLDMG-FEPQIREVMQNL------PDKHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~------~~~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
.++++||||=+-++.... .-..+..+...+ .+...++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 458899999998765322 223444444322 2334578889997655545555543
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.20 E-value=0.87 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=13.9
Q ss_pred EEEEcCCCChHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTI 45 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~ 45 (433)
+++.+++|+|||.++..
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 385
>PRK05595 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.23 Score=47.70 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=58.2
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEE-ECCCC
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VGGTN 102 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (433)
..|.-++|.|.||.|||..++..+....... +..+++++. ..-..|+..++....... ....+ .|...
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~-------g~~vl~fSl-Ems~~~l~~R~~a~~~~v---~~~~~~~~~l~ 267 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALRE-------GKSVAIFSL-EMSKEQLAYKLLCSEANV---DMLRLRTGNLE 267 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHc-------CCcEEEEec-CCCHHHHHHHHHHHhcCC---CHHHHhcCCCC
Confidence 3445588899999999976654444333332 667777765 334455555544433222 11111 22223
Q ss_pred HHHHHHHh-----hCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 103 IAEQRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 103 ~~~~~~~~-----~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
..++.... .....+.|- |++.+.....+... -.++++||||=.|.+..
T Consensus 268 ~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 268 DKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 22221111 122344442 33344333222111 13488999999998763
No 386
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.19 E-value=0.31 Score=46.76 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=57.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE-EECCCCH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI-VVGGTNI 103 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (433)
.|.-++|.|+||+|||..++..+....... +..+++++. ..-..|+.+++...... +.... ..|....
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-------g~~vl~~Sl-Em~~~~i~~R~~~~~~~---v~~~~~~~g~l~~ 262 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE-------GKPVAFFSL-EMSAEQLAMRMLSSESR---VDSQKLRTGKLSD 262 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCeEEEEeC-cCCHHHHHHHHHHHhcC---CCHHHhccCCCCH
Confidence 345589999999999976554444433322 566777764 33455555555544322 22111 1232333
Q ss_pred HHHH------HHhhCCCcEEE-----eccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 104 AEQR------SELRGGVSIVV-----ATPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 104 ~~~~------~~~~~~~~Ivv-----~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
.++. ..+ .+..+.| .|.+.+...+...... ..+++||||=.+.+.
T Consensus 263 ~~~~~~~~a~~~l-~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 263 EDWEKLTSAAGKL-SEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2221 112 2234444 2344454333321111 247899999998774
No 387
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.16 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.++.||.|+|||.++. .+...+.
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHh
Confidence 4999999999997754 4444444
No 388
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.14 E-value=0.034 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.++|.||.|+|||.. +..++..+
T Consensus 21 ~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred cEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 5799999999999963 34444443
No 389
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.10 E-value=0.036 Score=57.42 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCc-EEEEecccccCcccCCCcEEEEcc
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN-ILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
...+++|+|+.-......+...+...++....-.+ .++....+..|++ ++ .++-+...+-|+|+-++.+|+..+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheec
Confidence 33467999998888888888888777665444333 3445556666765 44 455678889999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
+--++..-.|.+||++|.|++....+..-..+....+.|
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~I 1332 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENI 1332 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHH
Confidence 999999999999999999997666555544444333333
No 390
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.09 E-value=0.2 Score=51.42 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.+.++.||+|+|||..+-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999997653
No 391
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.12 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..|+.||.|+|||.++. .+...+.
T Consensus 40 A~Lf~GP~GvGKTTlA~-~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAK-IFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHhc
Confidence 48899999999997654 3444443
No 392
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.052 Score=55.18 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=58.6
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCC-----Cceee-ecCCCCHHHHHHHHHHHhcCCCcEEEEecc-cccCccc-C--C
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEG-----LHAVA-LHGGRNQSDRESALRDFRNGSTNILVATDV-ASRGLDV-M--G 310 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi-p--~ 310 (433)
.++++++.+||..-+.++++.|.... ..+.. ||+.++..+++..+++|.+|+.+|||+|+. +..-.+. . .
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 34679999999999999888887652 33333 999999999999999999999999999964 4433332 2 2
Q ss_pred CcEEEEcc
Q 013962 311 VAHVVNLD 318 (433)
Q Consensus 311 ~~~Vi~~~ 318 (433)
.+.|+.-|
T Consensus 204 FdfifVDD 211 (1187)
T COG1110 204 FDFIFVDD 211 (1187)
T ss_pred CCEEEEcc
Confidence 45555433
No 393
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.08 E-value=0.051 Score=47.56 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=21.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhc
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQ 54 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~ 54 (433)
=++|.+|||||||.+ +..++.++.++
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 388999999999965 67788887764
No 394
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.07 E-value=0.17 Score=42.13 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
..++.||.|+|||..+ ..+...+..
T Consensus 16 ~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 4899999999999754 444455443
No 395
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.15 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+|+.+|.|+|||.++.. +...+
T Consensus 40 a~Lf~GPpG~GKTtiAri-lAk~L 62 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI-FAKAL 62 (624)
T ss_pred eEEEECCCCCCHHHHHHH-HHHhc
Confidence 478999999999987654 33443
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.05 E-value=0.053 Score=45.13 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHH
Q 013962 11 RPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
.+.+.|.+.+.... .+..+++.+|||||||.. +..++..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl-l~aL~~~ 48 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL-LNALLAF 48 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 35667777777666 567899999999999964 3334433
No 397
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.05 E-value=0.29 Score=50.96 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~ 45 (433)
.++.++.||+|.|||.++-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 35799999999999986543
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=95.01 E-value=0.55 Score=44.50 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=28.5
Q ss_pred CccEEEEcccchhcc-CCCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhc
Q 013962 137 RVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 190 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 190 (433)
.+++||+|=+=++.. ...-..+..+.....+...++.++|+........+..+.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~ 237 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFN 237 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHH
Confidence 467788887765432 112233444444444444466667766555555555443
No 399
>PRK08760 replicative DNA helicase; Provisional
Probab=95.00 E-value=0.36 Score=46.65 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+.-++|.|.||.|||..++..+....... +..+++.+. ..-..|+..++.......+... ...|.....+
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~-------g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~--i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKS-------KKGVAVFSM-EMSASQLAMRLISSNGRINAQR--LRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhc-------CCceEEEec-cCCHHHHHHHHHHhhCCCcHHH--HhcCCCCHHH
Confidence 34588999999999976554444333332 556777754 3445566666655432221111 1123333333
Q ss_pred HHHH-----hhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 106 QRSE-----LRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 106 ~~~~-----~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
+... ...+..+.|- |++.+....++-.. -..+++||||=.+.+.
T Consensus 299 ~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 2211 1123455543 34454333322111 1347899999999774
No 400
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.18 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
..|+.||.|+|||.++.. +...+
T Consensus 40 a~Lf~Gp~GvGKttlA~~-lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV-FAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHh
Confidence 488999999999987644 34444
No 401
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.38 Score=47.73 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..+.+++||||+|.+... -...+.+.++.-++...+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 356889999999987643 2334445555444445455444
No 402
>PRK10436 hypothetical protein; Provisional
Probab=94.88 E-value=0.054 Score=51.70 Aligned_cols=39 Identities=31% Similarity=0.252 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+.|.+.+..+.. +.-+++.||||||||.+ +..++..+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 46667777876653 34589999999999975 35556654
No 403
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.23 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=16.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
+|+.||.|+|||.++. .+...+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~-~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTAR-ILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHH-HHHHHhc
Confidence 6899999999997654 3444443
No 404
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.80 E-value=0.18 Score=48.28 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=32.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.-+++.+++|+|||..++. ++..+... +.+++++..- +-..|+..+...+
T Consensus 95 svilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred eEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHc
Confidence 4589999999999976544 33333332 5678888864 4456666555543
No 405
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.22 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
..+|+.||.|+|||.++. .++..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~-~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR-ILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHH-HHHHHhcC
Confidence 357999999999997654 34444433
No 406
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.77 E-value=0.13 Score=47.82 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=22.6
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHH
Q 013962 21 PVALSGRDLLGCAETGSGKTAAFTIPMIQ 49 (433)
Q Consensus 21 ~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 49 (433)
+.+..+.|++..+|+|+|||.+|......
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 45557889999999999999877654444
No 407
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.25 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+|+.||.|+|||.++.. ++..+
T Consensus 43 YLF~GP~GtGKTt~Ari-LAk~L 64 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI-FANAL 64 (725)
T ss_pred EEEECCCCCcHHHHHHH-HHHHh
Confidence 68999999999987643 33443
No 408
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.74 E-value=0.33 Score=39.39 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=64.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 107 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
-+.|.-..|-|||.+++-.++..+-. |.+|+++-=.+.-. ..-+...+ ..++++.......+.......
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~~--~~GE~~~l-~~l~~~~~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGGR--YSGELKAL-KKLPNVEIERFGKGFVWRMNE 73 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--SS----HHHHHH-GGGT--EEEE--TT----GGG
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCCC--CcCHHHHH-HhCCeEEEEEcCCcccccCCC
Confidence 36677788999999887777776544 88899887655511 11222222 222333332222111100000
Q ss_pred HHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC--HHHHHHHHhhCCCCCcEEEEEeecchHHHHH
Q 013962 108 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEAL 185 (433)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 185 (433)
.. .+ .......++.... ...-..+++||+||+-...+.++ ...+..++...|...-+|+..-.+|+.+.+.
T Consensus 74 ~~----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 0011112222222 12235699999999998887763 4456777776666666665555566555544
Q ss_pred HH
Q 013962 186 AQ 187 (433)
Q Consensus 186 ~~ 187 (433)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 409
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.73 E-value=0.1 Score=54.40 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=63.9
Q ss_pred CeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEEc
Q 013962 243 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVNL 317 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~~ 317 (433)
.+++|.+||..-|....+.+++. ++.+..+++..+..++..+++.+.+|.++|+|+|. .+...+.+.++.++|.-
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 56999999999999988877653 56788899999999999999999999999999996 55567788888887753
No 410
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.026 Score=49.65 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 479999999999998653
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.68 E-value=0.97 Score=40.55 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=73.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP--TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P--~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
+++.+..|+|||.+ +.-+..++.++ |.++++.+- .|+-+. +++..|.+.. +..+.....|.++..
T Consensus 142 il~vGVNG~GKTTT-IaKLA~~l~~~-------g~~VllaA~DTFRAaAi---EQL~~w~er~-gv~vI~~~~G~DpAa- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT-IAKLAKYLKQQ-------GKSVLLAAGDTFRAAAI---EQLEVWGERL-GVPVISGKEGADPAA- 208 (340)
T ss_pred EEEEecCCCchHhH-HHHHHHHHHHC-------CCeEEEEecchHHHHHH---HHHHHHHHHh-CCeEEccCCCCCcHH-
Confidence 78899999999976 45666666653 666666653 333333 3344444332 333333112222111
Q ss_pred HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHHHHhhCCCCC------cEEEEEeecc
Q 013962 107 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKH------QTLLFSATMP 179 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~~~~~------~~i~~SAT~~ 179 (433)
-.++.+.. ..-+++++|++|=|-++-+.. .-..+.++.+-..+.. .++.+-||..
T Consensus 209 ----------------VafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 209 ----------------VAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ----------------HHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 11233222 123568899999999887543 3445566655554332 3455589988
Q ss_pred hHHHHHHHHh
Q 013962 180 VEIEALAQEY 189 (433)
Q Consensus 180 ~~~~~~~~~~ 189 (433)
.+....++.|
T Consensus 271 qnal~QAk~F 280 (340)
T COG0552 271 QNALSQAKIF 280 (340)
T ss_pred hhHHHHHHHH
Confidence 7777766665
No 412
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.68 E-value=0.44 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++.++.||+|+|||.++ -.+...+
T Consensus 209 ~n~lLvG~pGvGKTal~-~~La~~i 232 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV-EGLALRI 232 (852)
T ss_pred CceeEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999764 3344433
No 413
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.66 E-value=0.61 Score=43.62 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=62.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH---HHHHHhccCCCceEEEEECCCCHHHH
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK---EVKALSRSLDSFKTAIVVGGTNIAEQ 106 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
++.++.|+|||.+....++..+...+ ....++++..+..+.....+ .+..+.................
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-----PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI---- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-----S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-----CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE----
Confidence 57889999999887777777766643 13566666444455554322 2333322211111111111100
Q ss_pred HHHhhCCCcEEEeccHHH--HHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec--chHH
Q 013962 107 RSELRGGVSIVVATPGRF--LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM--PVEI 182 (433)
Q Consensus 107 ~~~~~~~~~Ivv~T~~~l--~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~--~~~~ 182 (433)
...++..|.+.+...= ..-+.- ..+++|++||+-.+.+..+...+........ ....+..|.|+ ....
T Consensus 72 --~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 72 --ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWF 143 (384)
T ss_dssp --EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHH
T ss_pred --EecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCce
Confidence 0124455666553321 111111 3478999999887654433333333333222 22222444433 3445
Q ss_pred HHHHHHhcCCC
Q 013962 183 EALAQEYLTDP 193 (433)
Q Consensus 183 ~~~~~~~~~~~ 193 (433)
...........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55555555554
No 414
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.64 E-value=1.6 Score=42.95 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=72.3
Q ss_pred cHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 13 TSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 13 ~~~Q~~~i~~~~~-------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
|--|..|+..... +--+-+.|.-|-||+.+.-+.+...+... -..+.|..|.-+-..-.++-+-+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-------ysnIyvtSPspeNlkTlFeFv~k- 326 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-------YSNIYVTSPSPENLKTLFEFVFK- 326 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-------cceEEEcCCChHHHHHHHHHHHc-
Confidence 3457777654442 23477899999999976555555554432 34577778887655444333222
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-----------------CCCCCCCccEEEEcccch
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-----------------GNTSLSRVSFVILDEADR 148 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-----------------~~~~~~~~~~vIiDE~h~ 148 (433)
++....+..- -+++|+..|...|.+.+-+ ....+....++|||||-.
T Consensus 327 -----GfDaL~Yqeh-----------~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAA 390 (1011)
T KOG2036|consen 327 -----GFDALEYQEH-----------VDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAA 390 (1011)
T ss_pred -----chhhhcchhh-----------cchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhc
Confidence 2221111111 1123333333322222110 112245578999999997
Q ss_pred hccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 149 MLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
+. .+.+++++ .+.+++|+.|..
T Consensus 391 IP----Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 391 IP----LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred CC----HHHHHHhh-----cceeEEEeeccc
Confidence 63 45555554 456899999984
No 415
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.63 E-value=0.21 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++.++.||+|.|||.++- .+...+
T Consensus 195 ~n~lL~G~pGvGKT~l~~-~la~~i 218 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE-GLAQRI 218 (852)
T ss_pred CceEEEcCCCCCHHHHHH-HHHHHH
Confidence 579999999999997653 333333
No 416
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.2 Score=50.25 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=72.2
Q ss_pred EEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-CCceeeecCCCCHHHHHHHHHHHhc
Q 013962 212 LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRN 290 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~ 290 (433)
+..+..+.|....+..+.+.. ..+..+||.+|.+...-.+.+.++.. +.++..+|+++++.+|...+.+..+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L-------~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~ 294 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVL-------AQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR 294 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHH-------HcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc
Confidence 344555666666555555544 33466999999999988888888665 7899999999999999999999999
Q ss_pred CCCcEEEEecccccCcccCCCcEEEE
Q 013962 291 GSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 291 g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
|+.+|+|.|..+- =.-+++...+|.
T Consensus 295 G~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 295 GEARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred CCceEEEEechhh-cCchhhccEEEE
Confidence 9999999994321 123345666664
No 417
>PF12846 AAA_10: AAA-like domain
Probab=94.55 E-value=0.053 Score=49.06 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+.++++.|+||+|||..+. .++..+... +..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchH
Confidence 3679999999999997654 555555553 6777777665443
No 418
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.55 E-value=0.32 Score=47.07 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=14.0
Q ss_pred EEEEcCCCChHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTI 45 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~ 45 (433)
.++.||.|+|||.++..
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 419
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.54 E-value=0.054 Score=48.20 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
.+.++++.|+||||||.+ +..++..+... ..+++.+-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 467899999999999964 45566654431 3667777766555
No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.50 E-value=0.064 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=24.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
-+++.+|||||||.+ +..++..+... .+.+++.+-...+
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCcc
Confidence 378999999999965 44455554332 1445555554433
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.41 E-value=0.26 Score=47.82 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..+++.+|+|+|||..++..+...+.+ +.++++++- .+-..|....+..+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--------KERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEe-eCCHHHHHHHHHHc
Confidence 3469999999999998766555544332 677888774 56677788887765
No 422
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.41 E-value=0.094 Score=47.63 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997543
No 423
>PF05729 NACHT: NACHT domain
Probab=94.38 E-value=0.54 Score=37.94 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=17.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
-++|.|+.|+|||.. +..+...+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 368999999999965 4445555444
No 424
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.12 Score=45.03 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~ 45 (433)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4699999999999976543
No 425
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.37 E-value=0.29 Score=49.13 Aligned_cols=77 Identities=23% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC-C-CceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
+..+||.+|.+..+..+.+.|+.. + ..+..+|+++++.+|...+....+|+.+|+|.|..+- =.-+++...||..+-
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEEEcC
Confidence 456999999999999999999875 3 5789999999999999999999999999999995422 123456677776554
No 426
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.36 E-value=0.23 Score=51.79 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
++.++.||+|+|||.++-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999997653
No 427
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.35 E-value=0.072 Score=51.41 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~--~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+.|.+.+..+.... -+++.||||||||.+ +..++..+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 4677888887776543 378999999999965 34455544
No 428
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.33 E-value=0.16 Score=47.76 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999764
No 429
>PRK06321 replicative DNA helicase; Provisional
Probab=94.31 E-value=0.98 Score=43.55 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEE-ECCCCHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VGGTNIA 104 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 104 (433)
|.=++|.|.+|.|||..++. ++..+... .+..+++++. ..-..|+..++...... +....+ .+.....
T Consensus 226 G~LiiiaarPgmGKTafal~-ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~~s~---v~~~~i~~~~l~~~ 294 (472)
T PRK06321 226 SNLMILAARPAMGKTALALN-IAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICSRSE---VESKKISVGDLSGR 294 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhcC---CCHHHhhcCCCCHH
Confidence 34578899999999976554 44443221 1556777653 34455555555443222 221111 2333333
Q ss_pred HHHH------HhhCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 105 EQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 105 ~~~~------~~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
++.. .+ .+..+.|- |.+.+....++-.. -..+++||||=.+.+.
T Consensus 295 e~~~~~~a~~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 295 DFQRIVSVVNEM-QEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHH-HcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 3332 12 23456553 44445333332111 1348899999999775
No 430
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.27 E-value=0.093 Score=46.38 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013962 17 AQAMPVALSGRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 17 ~~~i~~~~~~~~~l~~~~TGsGKT~~~~ 44 (433)
+.++..+..+.++++.||+|+|||.++.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445555678899999999999998764
No 431
>PRK05636 replicative DNA helicase; Provisional
Probab=94.19 E-value=0.31 Score=47.28 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEE-ECCCCHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VGGTNIA 104 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 104 (433)
+.-++|.|.||.|||..++..+....... +..+++.+. .--..|+..++-..... +....+ .|..+..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~-------g~~v~~fSl-EMs~~ql~~R~ls~~s~---v~~~~i~~g~l~~~ 333 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKH-------NKASVIFSL-EMSKSEIVMRLLSAEAE---VRLSDMRGGKMDED 333 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEe-eCCHHHHHHHHHHHhcC---CCHHHHhcCCCCHH
Confidence 34478899999999976654443333332 556666642 33344444444332211 111111 2333333
Q ss_pred HHHHHh-----hCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 105 EQRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 105 ~~~~~~-----~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
++.... ..+..+.|- |...+....++.... ..+++||||=.|.+.
T Consensus 334 e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~ 388 (505)
T PRK05636 334 AWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 332211 123455552 333343222221111 348899999999875
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.19 E-value=0.09 Score=45.36 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=34.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+..+++.+++|+|||..++..+...+.+. +..+++++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEec-CCHHHHHHHHHHc
Confidence 345699999999999987666666665541 4557777753 3345566666654
No 433
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.14 E-value=0.95 Score=45.70 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=46.3
Q ss_pred EEEEEeccccHHHHHHHHHHCC-------CceeeecCCCCHHHHHHHHHHHhc--------CCCcEEEEecccccCcccC
Q 013962 245 TIVFVERKTRCDEVSEALVAEG-------LHAVALHGGRNQSDRESALRDFRN--------GSTNILVATDVASRGLDVM 309 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~vlv~T~~~~~Gidip 309 (433)
+|||+++....+.+....+..+ .+- ++..-.+..+-.+++..|-+ |.+-..||=...++|+|+.
T Consensus 564 ~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDFs 642 (945)
T KOG1132|consen 564 LLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDFS 642 (945)
T ss_pred eEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCcc
Confidence 9999999987777755554421 111 11121233344445555533 3333555668899999996
Q ss_pred C--CcEEEEccCCC
Q 013962 310 G--VAHVVNLDLPK 321 (433)
Q Consensus 310 ~--~~~Vi~~~~~~ 321 (433)
+ .+.||..+.|.
T Consensus 643 D~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 643 DDNGRAVIITGLPY 656 (945)
T ss_pred ccCCceeEEecCCC
Confidence 5 67899988874
No 434
>PRK09087 hypothetical protein; Validated
Probab=94.11 E-value=0.19 Score=43.24 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=23.1
Q ss_pred cEEEEcccchhccCCCHHHHHHHHhhCCC-CCcEEEEEeecch
Q 013962 139 SFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPV 180 (433)
Q Consensus 139 ~~vIiDE~h~~~~~~~~~~~~~~~~~~~~-~~~~i~~SAT~~~ 180 (433)
++|++|++|.+.. ....+..++..+.. ..++|+.|.++|+
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 3799999997632 24456666655544 4444444444543
No 435
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.10 E-value=0.13 Score=47.16 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999997654
No 436
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.08 E-value=0.81 Score=41.55 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
....+++|||++|.|... -...+.++++.-+ ...+|++|..+
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECCh
Confidence 456899999999988543 2334445555444 55455555443
No 437
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.06 E-value=0.032 Score=45.91 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=28.2
Q ss_pred hhCCCcEEEeccHHHHHHHHcCCCC--CCCccEEEEcccchhcc
Q 013962 110 LRGGVSIVVATPGRFLDHLQQGNTS--LSRVSFVILDEADRMLD 151 (433)
Q Consensus 110 ~~~~~~Ivv~T~~~l~~~~~~~~~~--~~~~~~vIiDE~h~~~~ 151 (433)
....++|+|+++..|++........ ..+-.+|||||||.+.+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3456899999999886654332221 23457899999998865
No 438
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.03 E-value=0.19 Score=48.76 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....+++||||+|.+... ....+.+.+..-++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 456889999999988643 2334455555555555556555
No 439
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.01 E-value=0.29 Score=45.25 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.|+..+|.+|.|+|||..+ ..+...+..
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 5788999999999999643 345554443
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.00 E-value=0.73 Score=40.73 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.7
Q ss_pred HHHhhc-C--CcEEEEcCCCChHHH
Q 013962 20 MPVALS-G--RDLLGCAETGSGKTA 41 (433)
Q Consensus 20 i~~~~~-~--~~~l~~~~TGsGKT~ 41 (433)
+..+.. + .++++.+|+|+|||.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 444443 3 578999999999996
No 441
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.99 E-value=0.26 Score=47.55 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+.+++.||+|+|||.++ -.+...+
T Consensus 216 p~GILLyGPPGTGKT~LA-KAlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA-KAVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHHH-HHHHHhh
Confidence 357999999999999754 3344443
No 442
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.98 E-value=0.19 Score=53.81 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=62.3
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 316 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~ 316 (433)
+.+++|.+|++..+....+.+.+. ++.+..+++..+..++..+++...+|.++|+|+|. .+...+++.++.++|.
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 467999999999999988888753 46777899999999999999999999999999995 4555667777877775
No 443
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.95 E-value=0.12 Score=51.07 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+.|.+.+..+.. +..+++.||||||||.+ +..++..+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 35677777776664 34588999999999975 45555554
No 444
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.94 E-value=0.18 Score=43.42 Aligned_cols=46 Identities=20% Similarity=0.077 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
+.-+.|.+++|+|||..++..+........ -.+....++++.....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~--~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE--LGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc--cCCCcceEEEEecCCC
Confidence 456899999999999866554444332210 0011266788776543
No 445
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.28 Score=46.54 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=23.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
++++.+|.|||||..+.-.+... .-+.+=+++|..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S----------~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS----------DFPFVKIISPED 574 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc----------CCCeEEEeChHH
Confidence 59999999999996543322221 266777888853
No 446
>PRK04328 hypothetical protein; Provisional
Probab=93.89 E-value=0.12 Score=45.17 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+..+++.+++|+|||..++..+...+.. +..+++++- .+-..+..+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEEe-eCCHHHHHHHHHHc
Confidence 34568999999999997665555554433 667777774 34445566666554
No 447
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.86 E-value=0.54 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..++.||.|+|||..+ ..+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a-~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA-RIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 4789999999999654 44444444
No 448
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.83 E-value=0.18 Score=44.51 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
.+.-++|.+++|+|||..++..+...+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 34568999999999998666555544332 667888874
No 449
>PRK09165 replicative DNA helicase; Provisional
Probab=93.78 E-value=1.1 Score=43.73 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-------CCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEE
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-------VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV 98 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~-------~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 98 (433)
|.-++|.|.||.|||..++..+......... .....+..+++++. ..-..|+..++.......+.-. +..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~--i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSK--IRR 293 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHH--Hhc
Confidence 3458999999999997665544443322100 00012566777754 4445666666554432221111 122
Q ss_pred CCCCHHHHHHHh-----hCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 99 GGTNIAEQRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 99 ~~~~~~~~~~~~-----~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
|..+..++.... .....+.|- |++.+....++-.. -..+++||||=.|.+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 333333332211 123345542 34455433332111 1348899999999775
No 450
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.78 E-value=1.2 Score=43.36 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=78.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC-CCceEEEEECCCCHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNIAE 105 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 105 (433)
+..+.-.|---|||. ++.|++..++... .|-++.++++.+..++-..+++..-+... +.-.+....+
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------ 270 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------ 270 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC------
Confidence 456777899999997 4677777777643 38899999999988877777765443222 2111211111
Q ss_pred HHHHhhCCCcEEEeccHH-----HHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CCCCcEEEEEeec
Q 013962 106 QRSELRGGVSIVVATPGR-----FLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATM 178 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~-----l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~ 178 (433)
..|.+.-|+. +......+...=.+++++++||||-+. ...+..++..+ .++.++|+.|.|-
T Consensus 271 --------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 --------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred --------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 1333433321 112222233334568999999999653 34556666554 4577889998884
No 451
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.15 Score=47.44 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=26.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+.+++++|.|+|||..+-..+.+. +....-|.| .+|...|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~-----------~atff~iSa-ssLtsK~~ 227 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES-----------GATFFNISA-SSLTSKYV 227 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh-----------cceEeeccH-HHhhhhcc
Confidence 468999999999997543322222 555566666 46666544
No 452
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.2 Score=45.78 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+|+++.+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 57999999999999754
No 453
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.46 Score=47.44 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred CCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 134 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 134 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
.+.+.+++||||+|.+... ....+.+.++.-+....+|+.|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 4567889999999988543 2334445555444444444433
No 454
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=93.68 E-value=0.12 Score=52.61 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=57.6
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..+++|-|.+++..-...+.+++.+|+|+|||-++. -++..+..+. ...+++|++.+..-.+|..+.+.+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn~-----p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHNS-----PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhcC-----CCcceEEEEecccchhHHHHHHHhc
Confidence 4456788999999998898999999999999998764 4555555543 3788999999998888888777654
No 455
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.67 E-value=0.13 Score=47.55 Aligned_cols=28 Identities=39% Similarity=0.574 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.+..+++++|||||||.+ +..++.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 445689999999999964 5666666654
No 456
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.66 E-value=0.46 Score=38.66 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCC-----C
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-----N 102 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~ 102 (433)
-+.|.-..|-|||.+++-.++..+-+ |.+|+++-=.+.-...=...+... ++++.......+. +
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~--------G~rV~iiQFlKg~~~~GE~~~l~~---~~~v~~~~~g~~~~~~~~~ 91 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQ--------GTPVLIVQFLKGGIQQGPDRPIQL---GQNLDWVRCDLPRCLDTPH 91 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcC--------CCEEEEEEEecCCCcchHHHHHHh---CCCcEEEECCCCCeeeCCC
Confidence 36778889999999888777776543 888888864443211111112221 1233332211110 0
Q ss_pred HH-HHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 103 IA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 103 ~~-~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.. +... .....++.... ...-..+++||+||+-...+.+ ....+..+++..|+..-+|+..-.+|
T Consensus 92 ~~~~~~~-----------~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 92 LDESEKK-----------ALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred cCHHHHH-----------HHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 00 0000 11112222221 1123568999999999888777 34566777777776666666555566
Q ss_pred hHHHHHH
Q 013962 180 VEIEALA 186 (433)
Q Consensus 180 ~~~~~~~ 186 (433)
+.+.+.+
T Consensus 160 ~~Lie~A 166 (178)
T PRK07414 160 ESLLAIA 166 (178)
T ss_pred HHHHHhC
Confidence 5554443
No 457
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.61 E-value=0.12 Score=47.65 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
.+..+++.||||||||.+ +..++..+... .+.+++.+-...++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 346799999999999964 45555544321 14556665544443
No 458
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.57 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..|+.||.|+|||.++. .+...+.
T Consensus 41 a~Lf~Gp~G~GKtt~A~-~lAk~l~ 64 (451)
T PRK06305 41 AYLFSGIRGTGKTTLAR-IFAKALN 64 (451)
T ss_pred EEEEEcCCCCCHHHHHH-HHHHHhc
Confidence 47899999999997654 3444443
No 459
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.54 E-value=0.16 Score=44.92 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=36.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.++.++|.+++|+|||..++..+...+.. |.++++++. .+...+..+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--------ge~vlyvs~-~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--------GEPVLYVST-EESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 46779999999999997655544444333 677788776 45556666666664
No 460
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.47 E-value=0.59 Score=48.65 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998653
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.46 E-value=0.38 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.225 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCChHHH
Q 013962 23 ALSGRDLLGCAETGSGKTA 41 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~ 41 (433)
+..|+.+++.+|.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478899999999999995
No 462
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.43 E-value=0.63 Score=37.93 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=68.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH-HHHHhccCCCceEEEEECCC--CHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE-VKALSRSLDSFKTAIVVGGT--NIAE 105 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~ 105 (433)
++|.-..|-|||.+++-.++..+-. |.+++|+-=-+.-...-.+. +..+ +..+....-+. ..+.
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~-----~~~v~~~~~~~g~tw~~ 97 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKF-----GLGVEFHGMGEGFTWET 97 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhh-----ccceeEEecCCceeCCC
Confidence 7888889999998887777776543 88888775332221111111 2222 11111111110 0000
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC--HHHHHHHHhhCCCCCcEEEEEeecchHHH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIE 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 183 (433)
+. ...++ ......+..... ...-..+++||+||.-..+..++ ...+..++..-|....+|+..-..|+.+.
T Consensus 98 ~~----~~~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 98 QD----READI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred cC----cHHHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 00 00011 112222222211 11223589999999998877663 34566666655555555544444555555
Q ss_pred HHHH
Q 013962 184 ALAQ 187 (433)
Q Consensus 184 ~~~~ 187 (433)
+.+.
T Consensus 171 e~AD 174 (198)
T COG2109 171 ELAD 174 (198)
T ss_pred HHHH
Confidence 5544
No 463
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.39 E-value=2.9 Score=35.09 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHH---HhhCCCCCcEEEEEeecch
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREV---MQNLPDKHQTLLFSATMPV 180 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~ 180 (433)
..+-+++|||-...+...+-...+..+ +..+...-++|.+|+-|..
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~ 169 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSA 169 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhh
Confidence 445679999999877654433233333 3444456679999998853
No 464
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.37 E-value=0.15 Score=46.82 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 12 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 12 ~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+.+.+.+.+..+. .+.++++.++||+|||.. +..++..+. ...+++++-...+|
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~--------~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVA--------PDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCC--------CCCcEEEECCccee
Confidence 4456666666555 456899999999999953 344443321 14556776666665
No 465
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.34 E-value=0.21 Score=46.10 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
.+..+++.+|||||||.+ +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456799999999999964 4556555543
No 466
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.31 E-value=0.77 Score=47.30 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
++.+++.||+|+|||..+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 367999999999999753
No 467
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.29 E-value=0.79 Score=42.45 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
.+.+.+.|+.|.|||.. +-++...... ..+.+ ++......++.+++..+. +..+.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~-----~~k~R----~HFh~Fm~~vh~~l~~~~------------~~~~~-- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI-----KRKRR----VHFHEFMLDVHSRLHQLR------------GQDDP-- 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc-----ccccc----ccccHHHHHHHHHHHHHh------------CCCcc--
Confidence 35699999999999973 3333332221 11223 355566666666666643 11110
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhh-CCCCCcEEEEEeecchHH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEI 182 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~ 182 (433)
...+.+.+. ....++.|||.| +.+-.-.-.+..++.. +..+..+|..|-++|..+
T Consensus 117 ---------------l~~va~~l~------~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 ---------------LPQVADELA------KESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ---------------HHHHHHHHH------hcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 011112221 346689999999 4443323334444433 345666777888887553
No 468
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.26 E-value=0.13 Score=44.16 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
++++.|++|||||. ++..++..+... -..+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~~-------f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRHK-------FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhccc-------CCEEEEEec
Confidence 68999999999995 456666554332 355666677
No 469
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.3 Score=46.35 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCccEEEEcccchhccC--------C-CHHHHHHHHhhCCC-----CCcEEEEEeec
Q 013962 135 LSRVSFVILDEADRMLDM--------G-FEPQIREVMQNLPD-----KHQTLLFSATM 178 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~--------~-~~~~~~~~~~~~~~-----~~~~i~~SAT~ 178 (433)
-+.+..|||||.+.+... + ....+..++..+.. +.-+|+||--.
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~ 379 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRK 379 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCch
Confidence 356889999999976421 1 34456666655532 44466776553
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.23 E-value=0.58 Score=35.61 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=31.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+.+.|+||+|||.++-+ +.+.+...... .--.......-.|....+.+..++++++.
T Consensus 56 lSfHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred EEeecCCCCcHHHHHHH-HHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 44799999999998754 44554443211 00011112223355666666666666654
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.23 E-value=0.2 Score=43.15 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..+++.+++|+|||..++..+...+.+ +..+++++... -..+..+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECCC-CHHHHHHHHHHc
Confidence 4568999999999997655544443332 67788877644 466676666654
No 472
>CHL00176 ftsH cell division protein; Validated
Probab=93.21 E-value=0.71 Score=46.25 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999764
No 473
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=0.41 Score=37.86 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
.++.+|.|||||.++....... .+ .++++...+++.|.
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~-----------~~-~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL-----------LP-GIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhh-----------cC-CeEEECHHHHhhhc
Confidence 5789999999998775444333 12 45666666766654
No 474
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.10 E-value=0.14 Score=48.06 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=32.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
...+++++.|.||||||. ++..++..+..+ +.+++|.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHH
Confidence 356789999999999996 567778777664 6677777777565443
No 475
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.10 E-value=0.17 Score=41.25 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=34.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
++|.+++|||||..+...+.. .+.+++++.....+-..+.+.+..+-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----------~~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----------LGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEEccCcCCHHHHHHHHHHH
Confidence 588999999999765543322 15678899888888777777766643
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=93.08 E-value=1.1 Score=40.79 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=74.7
Q ss_pred CcHHHHHHHHHhhcCCc------EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 12 PTSIQAQAMPVALSGRD------LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~------~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.|..|...+..++..++ +++.|.+|+|||.+. ..++... +...+++.+.. ... ++.-+.+.
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~-r~~l~~~----------n~~~vw~n~~e-cft-~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLV-RQLLRKL----------NLENVWLNCVE-CFT-YAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHH-HHHHhhc----------CCcceeeehHH-hcc-HHHHHHHH
Confidence 57899999999986654 489999999999753 3333332 33356666632 111 22222222
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH---HHHHHc--CCCCCCCccEEEEcccchhccCC--CHHHH
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF---LDHLQQ--GNTSLSRVSFVILDEADRMLDMG--FEPQI 158 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l---~~~~~~--~~~~~~~~~~vIiDE~h~~~~~~--~~~~~ 158 (433)
..... ..+.+.. -+=++.+.+ ...+.. .......--++|+|-++.+-+.+ ..+.+
T Consensus 77 L~~~~-------~~d~dg~-----------~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 77 LNKSQ-------LADKDGD-----------KVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred HHHhc-------cCCCchh-----------hhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 21110 0011000 000111222 222222 01111234578999999988765 34455
Q ss_pred HHHHhhCCCCCcEEEEEeecchHH
Q 013962 159 REVMQNLPDKHQTLLFSATMPVEI 182 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT~~~~~ 182 (433)
..+...++.+.-.+.+|+++.+..
T Consensus 139 ~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 139 FRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred HHHHHHhCCCceEEEEeccccHHH
Confidence 666666666666788899987553
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.08 E-value=0.15 Score=46.25 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
.+.++++.++||||||.. +..++..
T Consensus 143 ~~~~ili~G~tGsGKTTl-l~al~~~ 167 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF-LKSLVDE 167 (308)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHcc
Confidence 577899999999999963 3434433
No 478
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.32 Score=43.13 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=31.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
-+++.||+|+|||. .+-.+.+.+.-+. ..+. .+..++=.....|-..|+.+-.+
T Consensus 179 liLlhGPPGTGKTS-LCKaLaQkLSIR~-~~~y-~~~~liEinshsLFSKWFsESgK 232 (423)
T KOG0744|consen 179 LILLHGPPGTGKTS-LCKALAQKLSIRT-NDRY-YKGQLIEINSHSLFSKWFSESGK 232 (423)
T ss_pred EEEEeCCCCCChhH-HHHHHHHhheeee-cCcc-ccceEEEEehhHHHHHHHhhhhh
Confidence 37899999999995 3444444432221 1111 34456666777777766655444
No 479
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.99 E-value=0.57 Score=43.54 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.|+.++|.+|+|+|||..+ ..+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~-~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL-QKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHH-HHHHHhh
Confidence 6788999999999999643 3344443
No 480
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=1.1 Score=45.33 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=24.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
++++.+|||.|||..+ -.+...+.. +...++-..-.+-
T Consensus 523 sFlF~GPTGVGKTELA-kaLA~~Lfg--------~e~aliR~DMSEy 560 (786)
T COG0542 523 SFLFLGPTGVGKTELA-KALAEALFG--------DEQALIRIDMSEY 560 (786)
T ss_pred EEEeeCCCcccHHHHH-HHHHHHhcC--------CCccceeechHHH
Confidence 5899999999999865 334444332 3345665554443
No 481
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.91 E-value=0.24 Score=44.87 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 9 YTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
+..+.+.|..-+..+. .+++++++++||||||. ++.+++..+-. ..+++.+=-+.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc--------hhcEEEEeccccc
Confidence 3345556655554444 67899999999999995 56666666433 5556766666554
No 482
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.89 E-value=0.24 Score=44.75 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
+.-+.|.+|+|+|||..++..+... ... +..++++..-..+..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~-~~~-------g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEA-QKA-------GGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-------CCcEEEEcccchhHHH
Confidence 3568899999999997665544444 332 6778888766555543
No 483
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.86 E-value=0.79 Score=44.79 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.+|+|+|||..+
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999754
No 484
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.84 E-value=0.18 Score=41.99 Aligned_cols=18 Identities=39% Similarity=0.327 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIP 46 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~ 46 (433)
.++.+|||+|||..++..
T Consensus 4 ~~i~GpT~tGKt~~ai~l 21 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIAL 21 (233)
T ss_dssp EEEE-STTSSHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHH
Confidence 588999999999876543
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.78 E-value=0.18 Score=33.00 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+...++.+++|+|||.. +-++..+
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 44699999999999964 3344443
No 486
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.70 E-value=0.48 Score=40.67 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=27.9
Q ss_pred HhhcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 22 VALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 22 ~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
.+..++ -+.+.++.|||||.+.= .++..+.. +..++++.|...+..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~--------d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNE--------DQVAVVVIDKPTLSDA 93 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCC--------CceEEEEecCcchhHH
Confidence 334555 58899999999997643 33333322 4445555555544443
No 487
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.70 E-value=0.091 Score=49.45 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=35.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
++++.||||||||..+++|-+... ...++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHH
Confidence 578999999999988877765431 45688888888888766655544
No 488
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.68 Score=41.94 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+++.+|+|+|||.++-
T Consensus 127 ~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred CccceecCCCCchHHHHHH
Confidence 3579999999999998763
No 489
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.54 E-value=0.28 Score=44.38 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
+.-+.+.+|+|+|||..++..+...... +..++++.+-..+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--------g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--------GGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCCEEEECccccHHHH
Confidence 3468899999999997665554444322 7778999887766654
No 490
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.54 E-value=0.7 Score=37.72 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=31.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.++|.+++|||||..+...+... +..++++......-.++.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-----------~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-----------GLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-----------CCCcEeCcCCCCChHHHHHHHHHHH
Confidence 47899999999997654332221 3346777776666666767766554
No 491
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.48 E-value=0.16 Score=49.37 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=37.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.++++.||||||||..+++|.+.. . ...++|.=|--+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 369999999999999888886643 1 336788888888887766655553
No 492
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.47 E-value=0.49 Score=46.44 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCeEEEEEeccccH----HHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEE
Q 013962 242 FPLTIVFVERKTRC----DEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVN 316 (433)
Q Consensus 242 ~~~~lvf~~~~~~~----~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~ 316 (433)
+.++..-+||.--| +.+.+.|...++.+..+.|.+..+.|..+++...+|+++++|.|. .+...+++.+...||.
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 34588889986555 455666667799999999999999999999999999999999996 4678999998888886
Q ss_pred cc
Q 013962 317 LD 318 (433)
Q Consensus 317 ~~ 318 (433)
-.
T Consensus 391 DE 392 (677)
T COG1200 391 DE 392 (677)
T ss_pred ec
Confidence 44
No 493
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.46 E-value=0.21 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCc
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 71 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~ 71 (433)
+.-+.+.+|+|+|||..++..+...... +..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--------g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--------GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC
Confidence 4568999999999998765544443322 6677777764
No 494
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=1.3 Score=40.66 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=24.9
Q ss_pred CCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEe
Q 013962 134 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 176 (433)
Q Consensus 134 ~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 176 (433)
.....+++||||+|.+... -...+.+.++.-++...+|+.|.
T Consensus 107 ~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 3456789999999988543 23344444454444444555443
No 495
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.37 E-value=0.38 Score=52.21 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceE-------EEEE
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT-------AIVV 98 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~-------~~~~ 98 (433)
.++++|.|+-|||||.+...-++..+.... ....+++|+-|+.-+.++.+++............ ..+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-----~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~ 84 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV-----PPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALE 84 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC-----CCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc
Confidence 467999999999999887777776665432 2467999999999999998888776543210000 0000
Q ss_pred CC-CCH-------HHHHHHhhCCCcEEEeccHHHHHHHHcC
Q 013962 99 GG-TNI-------AEQRSELRGGVSIVVATPGRFLDHLQQG 131 (433)
Q Consensus 99 ~~-~~~-------~~~~~~~~~~~~Ivv~T~~~l~~~~~~~ 131 (433)
|. ... ......+.+...+-|+|.+.|+..+.+.
T Consensus 85 ~~~~~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r~ 125 (1141)
T TIGR02784 85 GKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCESLLHQ 125 (1141)
T ss_pred CCCCChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHHH
Confidence 10 110 1112233455678899999998877664
No 496
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.37 E-value=0.15 Score=38.75 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=24.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
..+.-+++.++.|+|||. +.-.++..+ +..--|.+||=.|++
T Consensus 13 ~~g~vi~L~GdLGaGKTt-f~r~l~~~l----------g~~~~V~SPTF~l~~ 54 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTT-FVRGLARAL----------GIDEEVTSPTFSLVN 54 (123)
T ss_dssp SS-EEEEEEESTTSSHHH-HHHHHHHHT----------T--S----TTTTSEE
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHc----------CCCCCcCCCCeEEEE
Confidence 344558889999999995 555565554 222377889877754
No 497
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.33 E-value=0.93 Score=46.93 Aligned_cols=17 Identities=29% Similarity=0.122 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.+|+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999754
No 498
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.30 E-value=0.53 Score=48.48 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999764
No 499
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.26 E-value=0.13 Score=39.85 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 77 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q 77 (433)
.+.-+++.++.|+|||. +.-.+...+ +..--|-+||-.|++.
T Consensus 21 ~~~~i~l~G~lGaGKTt-l~~~l~~~l----------g~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTT-LVQGLLQGL----------GIQGNVTSPTFTLVNE 62 (133)
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHc----------CCCCcccCCCeeeeee
Confidence 45568899999999995 445555543 2222477888777664
No 500
>PHA02542 41 41 helicase; Provisional
Probab=92.26 E-value=1.8 Score=41.70 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+.-+++.|.+|.|||..++..+.... .. +..|+++.- ..-..|+..++.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a-~~-------g~~Vl~fSL-EM~~~ql~~Rl~ 238 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYL-QQ-------GYNVLYISM-EMAEEVIAKRID 238 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHH-hc-------CCcEEEEec-cCCHHHHHHHHH
Confidence 34488899999999976655444443 32 666777752 233344544443
Done!