Query 013962
Match_columns 433
No_of_seqs 257 out of 2716
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 02:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-59 6.9E-64 444.8 42.6 351 2-363 69-422 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.4E-57 2.9E-61 427.2 39.2 353 2-363 28-397 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.1E-57 2.8E-61 426.2 35.4 347 2-363 50-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 3.8E-55 1.3E-59 413.4 38.9 345 2-362 34-378 (400)
5 1xti_A Probable ATP-dependent 100.0 1E-54 3.5E-59 409.4 38.8 346 2-361 21-370 (391)
6 3eiq_A Eukaryotic initiation f 100.0 1.6E-55 5.4E-60 418.2 32.6 347 2-363 53-401 (414)
7 1hv8_A Putative ATP-dependent 100.0 4.4E-54 1.5E-58 401.7 37.2 340 2-363 19-359 (367)
8 3fht_A ATP-dependent RNA helic 100.0 1.2E-53 4.1E-58 405.0 35.5 344 2-362 38-393 (412)
9 3pey_A ATP-dependent RNA helic 100.0 2.5E-53 8.5E-58 400.6 37.0 343 2-362 18-370 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 1.8E-53 6.2E-58 418.8 36.0 355 2-361 34-410 (579)
11 3i5x_A ATP-dependent RNA helic 100.0 1.5E-53 5E-58 419.6 33.5 355 2-361 85-461 (563)
12 2z0m_A 337AA long hypothetical 100.0 6.4E-53 2.2E-57 389.2 34.1 328 2-361 7-334 (337)
13 1fuu_A Yeast initiation factor 100.0 4E-55 1.4E-59 412.7 19.8 344 2-361 34-378 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 6.6E-52 2.3E-56 403.7 32.1 327 7-357 40-382 (591)
15 3fmp_B ATP-dependent RNA helic 100.0 4.7E-54 1.6E-58 414.6 15.2 343 2-361 105-459 (479)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-51 1.1E-55 395.2 31.2 325 4-359 17-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 4.6E-52 1.6E-56 401.5 21.2 341 2-361 132-483 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3.3E-49 1.1E-53 374.0 28.4 318 7-362 18-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 2.3E-47 7.8E-52 375.9 26.8 333 7-352 3-511 (556)
20 2ykg_A Probable ATP-dependent 100.0 1.3E-47 4.5E-52 386.7 23.2 345 2-357 4-524 (696)
21 3l9o_A ATP-dependent RNA helic 100.0 1.5E-46 5.2E-51 388.1 31.4 319 3-349 176-597 (1108)
22 2xgj_A ATP-dependent RNA helic 100.0 1E-45 3.6E-50 378.7 36.1 325 5-357 81-508 (1010)
23 3tbk_A RIG-I helicase domain; 100.0 3.5E-46 1.2E-50 367.4 30.5 336 11-357 4-515 (555)
24 1tf5_A Preprotein translocase 100.0 1.9E-45 6.6E-50 358.1 34.1 323 6-351 79-547 (844)
25 4a2q_A RIG-I, retinoic acid in 100.0 4.6E-46 1.6E-50 378.5 30.0 336 6-352 243-752 (797)
26 1wp9_A ATP-dependent RNA helic 100.0 2.1E-45 7.3E-50 356.4 33.4 326 11-352 9-478 (494)
27 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-45 4.6E-50 371.8 28.9 324 3-351 22-410 (715)
28 2zj8_A DNA helicase, putative 100.0 1.5E-45 5.2E-50 371.2 27.2 323 3-350 15-388 (720)
29 2p6r_A Afuhel308 helicase; pro 100.0 6.8E-46 2.3E-50 372.7 24.5 323 3-351 17-390 (702)
30 4ddu_A Reverse gyrase; topoiso 100.0 4.8E-45 1.6E-49 376.8 30.2 321 6-362 74-503 (1104)
31 1nkt_A Preprotein translocase 100.0 7.2E-44 2.5E-48 346.3 35.4 360 7-389 108-661 (922)
32 2fsf_A Preprotein translocase 100.0 4.4E-44 1.5E-48 347.5 32.7 356 11-388 74-626 (853)
33 4a2w_A RIG-I, retinoic acid in 100.0 8.1E-45 2.8E-49 372.7 26.4 341 6-352 243-752 (936)
34 4gl2_A Interferon-induced heli 100.0 7E-45 2.4E-49 367.0 24.7 327 10-347 6-517 (699)
35 4a4z_A Antiviral helicase SKI2 100.0 5.4E-44 1.9E-48 366.1 29.8 321 6-357 35-502 (997)
36 1gm5_A RECG; helicase, replica 100.0 2.6E-44 8.9E-49 357.2 24.1 321 5-357 363-705 (780)
37 1gku_B Reverse gyrase, TOP-RG; 100.0 1.6E-44 5.5E-49 373.4 22.1 321 5-363 52-468 (1054)
38 2eyq_A TRCF, transcription-rep 100.0 5.1E-42 1.7E-46 356.6 38.3 312 6-350 599-923 (1151)
39 4f92_B U5 small nuclear ribonu 100.0 1.5E-42 5.3E-47 370.0 33.7 344 2-357 917-1316(1724)
40 4f92_B U5 small nuclear ribonu 100.0 1.4E-42 4.8E-47 370.4 27.6 342 7-357 75-481 (1724)
41 2oca_A DAR protein, ATP-depend 100.0 5.8E-43 2E-47 340.0 21.9 317 9-347 111-453 (510)
42 2fwr_A DNA repair protein RAD2 100.0 1.4E-42 4.9E-47 334.0 14.4 289 11-346 93-449 (472)
43 2jlq_A Serine protease subunit 100.0 2E-41 7E-46 321.8 14.0 287 8-348 1-310 (451)
44 3jux_A Protein translocase sub 100.0 4.3E-38 1.5E-42 299.3 35.5 366 11-400 75-642 (822)
45 2whx_A Serine protease/ntpase/ 100.0 3.7E-41 1.3E-45 329.0 13.9 299 9-361 169-493 (618)
46 2wv9_A Flavivirin protease NS2 100.0 2.4E-41 8.2E-46 332.2 11.2 305 3-360 202-547 (673)
47 3h1t_A Type I site-specific re 100.0 3.6E-40 1.2E-44 325.4 18.7 317 10-347 177-556 (590)
48 3o8b_A HCV NS3 protease/helica 100.0 4.2E-40 1.4E-44 318.2 16.9 277 12-352 218-517 (666)
49 1yks_A Genome polyprotein [con 100.0 2.1E-41 7.2E-46 320.1 5.6 287 22-361 4-314 (440)
50 3dmq_A RNA polymerase-associat 100.0 4.8E-39 1.7E-43 330.3 22.5 332 10-361 152-625 (968)
51 1z63_A Helicase of the SNF2/RA 100.0 7.6E-38 2.6E-42 303.3 27.0 331 10-362 36-464 (500)
52 2xau_A PRE-mRNA-splicing facto 100.0 3.7E-38 1.3E-42 315.4 22.3 320 6-351 89-445 (773)
53 2z83_A Helicase/nucleoside tri 100.0 4.2E-39 1.4E-43 306.4 14.0 276 17-349 12-313 (459)
54 2v6i_A RNA helicase; membrane, 100.0 1.8E-38 6.3E-43 299.5 18.0 268 26-346 2-287 (431)
55 1z3i_X Similar to RAD54-like; 100.0 1.6E-34 5.6E-39 285.6 36.5 330 10-348 54-525 (644)
56 3rc3_A ATP-dependent RNA helic 100.0 3.5E-36 1.2E-40 294.6 23.1 285 19-357 148-452 (677)
57 3mwy_W Chromo domain-containin 100.0 1.3E-35 4.3E-40 300.9 28.0 325 10-348 235-681 (800)
58 2ipc_A Preprotein translocase 100.0 1.1E-33 3.7E-38 274.2 36.5 362 7-393 76-746 (997)
59 3fe2_A Probable ATP-dependent 100.0 5.1E-35 1.7E-39 255.5 22.2 198 2-200 42-239 (242)
60 1vec_A ATP-dependent RNA helic 100.0 6.6E-34 2.2E-38 242.6 22.1 190 2-196 16-205 (206)
61 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4E-34 1.4E-38 291.4 22.6 320 10-347 270-707 (1038)
62 1wrb_A DJVLGB; RNA helicase, D 100.0 2.7E-33 9.3E-38 246.5 24.4 207 1-208 35-249 (253)
63 3iuy_A Probable ATP-dependent 100.0 6.4E-34 2.2E-38 246.5 19.7 194 2-197 33-227 (228)
64 3ber_A Probable ATP-dependent 100.0 3E-33 1E-37 244.7 22.9 191 2-198 56-247 (249)
65 1q0u_A Bstdead; DEAD protein, 100.0 5.8E-34 2E-38 245.1 17.4 195 2-201 17-214 (219)
66 2oxc_A Probable ATP-dependent 100.0 1.9E-33 6.4E-38 243.6 19.8 191 2-198 37-228 (230)
67 3ly5_A ATP-dependent RNA helic 100.0 5.2E-33 1.8E-37 245.1 19.8 191 2-194 67-258 (262)
68 2gxq_A Heat resistant RNA depe 100.0 7.5E-33 2.6E-37 236.3 20.1 192 2-198 14-205 (207)
69 3bor_A Human initiation factor 100.0 3.6E-33 1.2E-37 242.8 18.1 191 2-198 43-234 (237)
70 1qde_A EIF4A, translation init 100.0 8.7E-33 3E-37 238.8 19.2 191 2-199 27-217 (224)
71 1t6n_A Probable ATP-dependent 100.0 8.1E-33 2.8E-37 238.2 18.5 191 2-197 27-219 (220)
72 2pl3_A Probable ATP-dependent 100.0 3E-32 1E-36 237.3 21.4 195 2-199 38-233 (236)
73 3fmo_B ATP-dependent RNA helic 100.0 1.3E-32 4.4E-37 246.8 17.1 190 2-199 105-298 (300)
74 3dkp_A Probable ATP-dependent 100.0 1.8E-31 6E-36 233.8 14.7 194 2-200 42-242 (245)
75 1c4o_A DNA nucleotide excision 100.0 5E-29 1.7E-33 246.1 28.3 176 168-359 380-560 (664)
76 2d7d_A Uvrabc system protein B 100.0 1.4E-27 5E-32 235.5 29.0 117 241-358 444-565 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 7.2E-27 2.5E-31 190.4 19.5 150 204-362 6-155 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 2.8E-27 9.6E-32 197.2 14.9 166 188-363 10-176 (191)
79 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.8E-26 6.3E-31 191.5 16.3 154 202-363 14-167 (185)
80 1fuk_A Eukaryotic initiation f 99.9 4.7E-26 1.6E-30 186.0 18.0 147 207-362 3-150 (165)
81 1t5i_A C_terminal domain of A 99.9 3E-26 1E-30 188.1 16.6 148 206-362 4-152 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 6.5E-26 2.2E-30 187.1 18.2 149 205-362 5-160 (175)
83 3eaq_A Heat resistant RNA depe 99.9 1.5E-25 5E-30 190.5 19.7 146 209-363 7-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.3E-24 4.5E-29 193.0 19.0 147 208-363 3-149 (300)
85 3b6e_A Interferon-induced heli 99.9 1.5E-25 5E-30 192.4 11.4 167 7-177 29-216 (216)
86 2vl7_A XPD; helicase, unknown 99.9 8.3E-25 2.8E-29 211.9 17.4 129 5-150 2-188 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 1.2E-21 4.3E-26 190.4 32.1 129 11-151 3-187 (551)
88 2yjt_D ATP-dependent RNA helic 99.8 3.6E-26 1.2E-30 187.6 0.0 145 208-361 4-149 (170)
89 1rif_A DAR protein, DNA helica 99.9 7.3E-24 2.5E-28 189.1 10.2 154 11-182 113-266 (282)
90 3llm_A ATP-dependent RNA helic 99.9 1.9E-21 6.4E-26 168.4 14.7 160 11-182 61-222 (235)
91 2fz4_A DNA repair protein RAD2 99.9 2E-21 6.8E-26 167.9 13.6 139 10-181 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 3.7E-19 1.3E-23 174.2 26.7 81 11-99 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1E-19 3.6E-24 159.6 12.1 125 216-347 93-220 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.2E-09 1.4E-13 103.1 10.6 146 13-177 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.7 4.1E-08 1.4E-12 97.3 10.6 68 10-85 188-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.7 1.4E-07 4.9E-12 91.3 12.4 124 10-177 188-315 (574)
97 3upu_A ATP-dependent DNA helic 98.6 2.3E-07 7.9E-12 88.0 12.7 136 6-176 20-163 (459)
98 3lfu_A DNA helicase II; SF1 he 98.6 5.6E-06 1.9E-10 82.4 22.9 72 10-87 8-79 (647)
99 2xzl_A ATP-dependent helicase 98.6 6.1E-07 2.1E-11 90.3 15.3 71 8-85 357-427 (802)
100 2gk6_A Regulator of nonsense t 98.6 9.2E-07 3.1E-11 87.1 15.7 71 8-85 177-247 (624)
101 2wjy_A Regulator of nonsense t 98.5 1.7E-06 6E-11 86.9 15.2 71 8-85 353-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.1 2.3E-05 7.7E-10 68.9 10.4 107 241-352 124-240 (328)
103 2o0j_A Terminase, DNA packagin 97.9 0.00027 9.4E-09 64.4 13.9 74 11-90 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.7 0.00075 2.6E-08 65.9 15.5 147 11-180 163-315 (592)
105 3ec2_A DNA replication protein 97.6 0.00039 1.3E-08 56.5 9.9 44 8-52 11-63 (180)
106 3vkw_A Replicase large subunit 97.5 0.00033 1.1E-08 64.6 9.4 106 29-177 164-269 (446)
107 2orw_A Thymidine kinase; TMTK, 97.4 0.00028 9.7E-09 57.5 6.3 39 26-72 3-41 (184)
108 2j9r_A Thymidine kinase; TK1, 97.4 0.00027 9.4E-09 58.3 6.2 38 28-73 30-67 (214)
109 1uaa_A REP helicase, protein ( 97.3 0.00075 2.6E-08 67.3 9.6 71 11-87 2-72 (673)
110 1xx6_A Thymidine kinase; NESG, 97.2 0.0006 2.1E-08 55.7 6.8 39 26-72 8-46 (191)
111 2b8t_A Thymidine kinase; deoxy 97.2 0.00031 1.1E-08 58.9 5.2 91 26-150 12-102 (223)
112 3te6_A Regulatory protein SIR3 97.2 0.0025 8.5E-08 56.5 11.1 27 26-53 45-71 (318)
113 2orv_A Thymidine kinase; TP4A 97.2 0.00062 2.1E-08 56.7 6.0 40 26-73 19-58 (234)
114 2kjq_A DNAA-related protein; s 97.0 0.00028 9.6E-09 55.3 2.8 27 16-43 27-53 (149)
115 1l8q_A Chromosomal replication 97.0 0.0025 8.7E-08 57.1 9.5 26 27-53 38-63 (324)
116 3e2i_A Thymidine kinase; Zn-bi 97.0 0.00096 3.3E-08 54.9 5.6 40 26-73 28-67 (219)
117 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0021 7E-08 64.5 9.1 72 10-87 10-81 (724)
118 1w4r_A Thymidine kinase; type 96.9 0.0017 5.8E-08 52.7 6.6 38 26-71 20-57 (195)
119 2zpa_A Uncharacterized protein 96.9 0.0027 9.1E-08 61.8 9.1 112 11-178 175-288 (671)
120 1a5t_A Delta prime, HOLB; zinc 96.9 0.0034 1.2E-07 56.5 9.3 40 12-52 3-49 (334)
121 1d2n_A N-ethylmaleimide-sensit 96.9 0.02 6.9E-07 49.7 13.7 18 27-44 65-82 (272)
122 2chg_A Replication factor C sm 96.9 0.0083 2.8E-07 50.2 11.0 41 136-177 101-141 (226)
123 2w58_A DNAI, primosome compone 96.8 0.0082 2.8E-07 49.5 10.1 25 27-52 55-79 (202)
124 2p65_A Hypothetical protein PF 96.8 0.011 3.6E-07 47.9 10.5 25 26-51 43-67 (187)
125 3u4q_A ATP-dependent helicase/ 96.8 0.0025 8.4E-08 67.8 8.0 73 10-86 9-81 (1232)
126 1jbk_A CLPB protein; beta barr 96.7 0.046 1.6E-06 44.2 13.6 25 27-52 44-68 (195)
127 3u61_B DNA polymerase accessor 96.6 0.0048 1.6E-07 55.3 7.8 40 136-175 104-143 (324)
128 2z4s_A Chromosomal replication 96.6 0.012 4E-07 55.2 10.5 38 27-70 131-168 (440)
129 2v1u_A Cell division control p 96.6 0.01 3.5E-07 54.5 10.1 25 26-51 44-68 (387)
130 3kl4_A SRP54, signal recogniti 96.6 0.019 6.5E-07 53.1 11.4 54 136-189 178-234 (433)
131 3bos_A Putative DNA replicatio 96.5 0.007 2.4E-07 51.4 8.0 26 26-52 52-77 (242)
132 2qgz_A Helicase loader, putati 96.3 0.0028 9.6E-08 56.3 4.4 26 26-52 152-177 (308)
133 2qby_B CDC6 homolog 3, cell di 96.2 0.016 5.4E-07 53.2 8.9 24 27-51 46-69 (384)
134 1iqp_A RFCS; clamp loader, ext 96.1 0.017 5.9E-07 51.6 8.6 40 136-176 109-148 (327)
135 2gno_A DNA polymerase III, gam 96.1 0.024 8.1E-07 50.1 8.9 40 135-175 80-119 (305)
136 1fnn_A CDC6P, cell division co 96.0 0.0067 2.3E-07 55.9 5.4 23 28-51 46-68 (389)
137 3h4m_A Proteasome-activating n 96.0 0.029 9.9E-07 49.1 9.1 18 26-43 51-68 (285)
138 3eie_A Vacuolar protein sortin 96.0 0.051 1.7E-06 48.5 10.7 18 27-44 52-69 (322)
139 1g5t_A COB(I)alamin adenosyltr 95.9 0.014 4.9E-07 47.3 6.3 135 26-185 28-170 (196)
140 1sxj_D Activator 1 41 kDa subu 95.9 0.041 1.4E-06 49.7 10.2 41 136-177 132-172 (353)
141 2qby_A CDC6 homolog 1, cell di 95.9 0.036 1.2E-06 50.7 9.8 25 26-51 45-69 (386)
142 3dm5_A SRP54, signal recogniti 95.8 0.11 3.8E-06 48.1 12.2 130 28-189 102-235 (443)
143 3syl_A Protein CBBX; photosynt 95.7 0.018 6.2E-07 51.1 6.8 25 27-52 68-92 (309)
144 4b4t_J 26S protease regulatory 95.7 0.12 4.1E-06 47.2 11.8 19 26-44 182-200 (405)
145 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.095 3.2E-06 45.0 10.8 18 27-44 40-57 (262)
146 2r6a_A DNAB helicase, replicat 95.6 0.08 2.7E-06 49.8 10.9 51 24-82 201-251 (454)
147 1sxj_B Activator 1 37 kDa subu 95.6 0.039 1.3E-06 49.2 8.4 38 137-175 107-144 (323)
148 3pfi_A Holliday junction ATP-d 95.5 0.052 1.8E-06 48.8 9.0 18 27-44 56-73 (338)
149 2q6t_A DNAB replication FORK h 95.5 0.063 2.2E-06 50.3 9.8 116 25-151 199-324 (444)
150 1sxj_C Activator 1 40 kDa subu 95.5 0.054 1.8E-06 48.8 9.0 39 136-175 109-147 (340)
151 2qp9_X Vacuolar protein sortin 95.4 0.13 4.6E-06 46.4 11.5 18 27-44 85-102 (355)
152 3hjh_A Transcription-repair-co 95.4 0.075 2.6E-06 50.0 9.9 52 25-87 13-64 (483)
153 1njg_A DNA polymerase III subu 95.4 0.07 2.4E-06 45.0 9.1 23 28-51 47-69 (250)
154 3pvs_A Replication-associated 95.4 0.037 1.3E-06 51.8 7.7 17 27-43 51-67 (447)
155 1sxj_A Activator 1 95 kDa subu 95.2 0.061 2.1E-06 51.5 8.9 41 136-178 147-189 (516)
156 1gm5_A RECG; helicase, replica 95.2 0.041 1.4E-06 55.2 7.7 78 243-320 418-500 (780)
157 3uk6_A RUVB-like 2; hexameric 95.1 0.14 4.8E-06 46.5 10.6 24 27-51 71-94 (368)
158 1hqc_A RUVB; extended AAA-ATPa 95.1 0.068 2.3E-06 47.6 8.3 17 27-43 39-55 (324)
159 2zan_A Vacuolar protein sortin 94.8 0.057 2E-06 50.5 7.3 17 27-43 168-184 (444)
160 2fna_A Conserved hypothetical 94.8 1.6 5.3E-05 39.1 16.8 30 13-43 18-47 (357)
161 1sxj_E Activator 1 40 kDa subu 94.7 0.074 2.5E-06 48.1 7.7 43 136-179 133-175 (354)
162 3hu3_A Transitional endoplasmi 94.6 0.088 3E-06 49.8 8.0 17 27-43 239-255 (489)
163 3oiy_A Reverse gyrase helicase 94.2 0.1 3.6E-06 48.3 7.6 79 241-319 63-148 (414)
164 1w5s_A Origin recognition comp 94.2 0.057 1.9E-06 50.0 5.7 24 27-51 51-76 (412)
165 1jr3_A DNA polymerase III subu 93.9 0.41 1.4E-05 43.4 10.8 39 136-175 118-156 (373)
166 4a1f_A DNAB helicase, replicat 93.8 0.065 2.2E-06 47.9 5.0 119 22-151 42-170 (338)
167 2chq_A Replication factor C sm 93.8 0.047 1.6E-06 48.5 4.1 23 28-51 40-62 (319)
168 3n70_A Transport activator; si 93.5 0.051 1.7E-06 42.0 3.3 20 24-43 22-41 (145)
169 1n0w_A DNA repair protein RAD5 93.5 0.26 8.8E-06 41.6 8.1 22 25-46 23-44 (243)
170 3cmu_A Protein RECA, recombina 93.4 0.22 7.4E-06 54.8 9.0 42 25-74 1426-1467(2050)
171 3co5_A Putative two-component 93.2 0.047 1.6E-06 42.1 2.7 21 23-43 24-44 (143)
172 2l8b_A Protein TRAI, DNA helic 92.9 0.097 3.3E-06 41.6 4.1 58 14-78 37-96 (189)
173 2ce7_A Cell division protein F 92.6 0.87 3E-05 42.7 10.8 17 27-43 50-66 (476)
174 1p9r_A General secretion pathw 92.4 0.17 5.8E-06 46.7 5.7 38 13-51 152-191 (418)
175 2i1q_A DNA repair and recombin 92.4 0.19 6.3E-06 44.8 5.9 58 27-84 99-165 (322)
176 3m6a_A ATP-dependent protease 92.3 0.23 7.9E-06 47.8 6.7 18 26-43 108-125 (543)
177 1ls1_A Signal recognition part 92.0 2.9 9.9E-05 36.4 12.9 19 27-45 99-117 (295)
178 2p6n_A ATP-dependent RNA helic 91.9 3 0.0001 33.6 12.1 71 62-143 54-128 (191)
179 2zts_A Putative uncharacterize 91.6 0.18 6E-06 42.9 4.7 51 26-84 30-80 (251)
180 2eyq_A TRCF, transcription-rep 91.6 0.37 1.3E-05 50.8 7.7 75 242-316 652-731 (1151)
181 2eyu_A Twitching motility prot 91.5 0.35 1.2E-05 41.5 6.3 27 23-50 22-48 (261)
182 3cf2_A TER ATPase, transitiona 91.5 0.41 1.4E-05 48.0 7.5 17 27-43 239-255 (806)
183 2dr3_A UPF0273 protein PH0284; 91.5 0.17 5.9E-06 42.8 4.4 51 24-83 21-71 (247)
184 4ddu_A Reverse gyrase; topoiso 91.4 0.33 1.1E-05 50.9 7.2 79 241-319 120-205 (1104)
185 1r6b_X CLPA protein; AAA+, N-t 91.3 1.2 4E-05 44.9 11.0 25 26-51 207-231 (758)
186 2hjv_A ATP-dependent RNA helic 91.0 2.8 9.5E-05 32.7 10.9 73 62-145 35-111 (163)
187 1qvr_A CLPB protein; coiled co 90.8 0.33 1.1E-05 49.6 6.5 25 26-51 191-215 (854)
188 2oap_1 GSPE-2, type II secreti 90.7 0.22 7.6E-06 47.3 4.7 31 12-42 245-276 (511)
189 3cf2_A TER ATPase, transitiona 90.5 0.36 1.2E-05 48.4 6.2 17 27-43 512-528 (806)
190 3bh0_A DNAB-like replicative h 90.3 0.88 3E-05 40.2 8.0 54 23-85 65-118 (315)
191 3jvv_A Twitching mobility prot 90.2 0.31 1.1E-05 43.9 5.0 27 25-52 122-148 (356)
192 1e9r_A Conjugal transfer prote 90.2 0.33 1.1E-05 45.3 5.4 43 26-76 53-95 (437)
193 1fuk_A Eukaryotic initiation f 89.8 3.6 0.00012 32.0 10.5 73 62-145 30-106 (165)
194 4b4t_M 26S protease regulatory 89.7 0.34 1.2E-05 44.8 4.8 19 26-44 215-233 (434)
195 2w0m_A SSO2452; RECA, SSPF, un 89.4 0.38 1.3E-05 40.2 4.7 40 23-70 20-59 (235)
196 4b4t_L 26S protease subunit RP 89.3 0.38 1.3E-05 44.5 4.8 18 27-44 216-233 (437)
197 4ag6_A VIRB4 ATPase, type IV s 89.3 0.42 1.4E-05 43.8 5.2 41 25-73 34-74 (392)
198 1t6n_A Probable ATP-dependent 89.2 1.4 4.9E-05 36.3 8.1 73 242-317 82-165 (220)
199 2rb4_A ATP-dependent RNA helic 89.1 3.3 0.00011 32.7 9.9 71 62-143 34-108 (175)
200 2r8r_A Sensor protein; KDPD, P 89.1 0.44 1.5E-05 39.6 4.7 23 28-50 8-30 (228)
201 1ypw_A Transitional endoplasmi 89.0 1.8 6.1E-05 43.8 9.9 18 26-43 238-255 (806)
202 3nwn_A Kinesin-like protein KI 88.9 0.27 9.3E-06 44.2 3.5 24 21-44 98-123 (359)
203 1oyw_A RECQ helicase, ATP-depe 88.7 0.83 2.8E-05 43.7 7.0 58 243-300 66-123 (523)
204 3eaq_A Heat resistant RNA depe 88.6 4.3 0.00015 33.2 10.6 71 62-143 31-105 (212)
205 2ewv_A Twitching motility prot 88.6 0.42 1.4E-05 43.4 4.6 27 24-51 134-160 (372)
206 4b4t_K 26S protease regulatory 88.4 0.51 1.7E-05 43.6 5.1 18 27-44 207-224 (428)
207 2v1x_A ATP-dependent DNA helic 88.1 0.9 3.1E-05 44.1 6.9 58 243-300 85-144 (591)
208 2r44_A Uncharacterized protein 88.1 0.29 9.8E-06 43.7 3.2 23 21-43 41-63 (331)
209 1bg2_A Kinesin; motor protein, 88.0 0.36 1.2E-05 42.7 3.7 24 21-44 71-96 (325)
210 1f9v_A Kinesin-like protein KA 88.0 0.38 1.3E-05 43.1 3.8 25 20-44 77-103 (347)
211 2px0_A Flagellar biosynthesis 88.0 0.54 1.9E-05 41.1 4.8 20 26-45 105-124 (296)
212 3b85_A Phosphate starvation-in 87.9 0.53 1.8E-05 38.7 4.4 30 13-42 9-38 (208)
213 3bgw_A DNAB-like replicative h 87.9 0.77 2.6E-05 42.8 6.0 51 25-84 196-246 (444)
214 3hr8_A Protein RECA; alpha and 87.7 0.37 1.2E-05 43.4 3.6 43 26-76 61-103 (356)
215 3t0q_A AGR253WP; kinesin, alph 87.6 0.38 1.3E-05 43.1 3.7 26 19-44 77-104 (349)
216 3t15_A Ribulose bisphosphate c 87.6 0.59 2E-05 40.9 4.8 18 27-44 37-54 (293)
217 2l82_A Designed protein OR32; 87.6 5.6 0.00019 27.8 9.9 50 245-294 5-54 (162)
218 3io5_A Recombination and repai 87.6 0.49 1.7E-05 41.5 4.2 43 28-76 30-72 (333)
219 1u94_A RECA protein, recombina 87.6 0.4 1.4E-05 43.2 3.8 41 25-73 62-102 (356)
220 3dc4_A Kinesin-like protein NO 87.6 0.35 1.2E-05 43.2 3.3 23 21-43 88-112 (344)
221 2bjv_A PSP operon transcriptio 87.5 0.36 1.2E-05 41.5 3.3 19 25-43 28-46 (265)
222 1v8k_A Kinesin-like protein KI 87.5 0.36 1.2E-05 44.1 3.4 24 21-44 148-173 (410)
223 4etp_A Kinesin-like protein KA 87.5 0.39 1.3E-05 44.0 3.6 26 19-44 132-159 (403)
224 2h58_A Kinesin-like protein KI 87.4 0.42 1.4E-05 42.4 3.7 26 19-44 72-99 (330)
225 2vvg_A Kinesin-2; motor protei 87.4 0.42 1.4E-05 42.8 3.7 22 22-43 84-107 (350)
226 4b4t_I 26S protease regulatory 87.4 0.64 2.2E-05 42.7 5.0 18 27-44 217-234 (437)
227 3lre_A Kinesin-like protein KI 87.3 0.43 1.5E-05 42.9 3.8 23 21-43 99-123 (355)
228 2ffh_A Protein (FFH); SRP54, s 87.2 10 0.00035 34.9 13.0 17 28-44 100-116 (425)
229 1goj_A Kinesin, kinesin heavy 87.2 0.43 1.5E-05 42.8 3.7 23 22-44 75-99 (355)
230 2y65_A Kinesin, kinesin heavy 87.2 0.43 1.5E-05 43.0 3.7 23 21-43 78-102 (365)
231 2cvh_A DNA repair and recombin 87.1 0.68 2.3E-05 38.2 4.8 36 25-71 19-54 (220)
232 3b6u_A Kinesin-like protein KI 87.1 0.4 1.4E-05 43.2 3.5 22 22-43 96-119 (372)
233 3nbx_X ATPase RAVA; AAA+ ATPas 87.0 0.34 1.2E-05 45.8 3.1 26 18-43 33-58 (500)
234 4a14_A Kinesin, kinesin-like p 87.0 0.45 1.5E-05 42.5 3.7 22 22-43 78-101 (344)
235 4b4t_H 26S protease regulatory 86.9 0.58 2E-05 43.4 4.4 19 26-44 243-261 (467)
236 2qmh_A HPR kinase/phosphorylas 86.8 0.33 1.1E-05 39.4 2.5 18 26-43 34-51 (205)
237 1t5c_A CENP-E protein, centrom 86.8 0.43 1.5E-05 42.7 3.5 23 21-43 71-95 (349)
238 2nr8_A Kinesin-like protein KI 86.8 0.43 1.5E-05 42.8 3.5 23 21-43 97-121 (358)
239 3gbj_A KIF13B protein; kinesin 86.8 0.44 1.5E-05 42.8 3.5 24 20-43 85-110 (354)
240 2zfi_A Kinesin-like protein KI 86.7 0.47 1.6E-05 42.8 3.7 23 21-43 83-107 (366)
241 3fe2_A Probable ATP-dependent 86.7 2.1 7.3E-05 35.9 7.8 74 241-318 101-184 (242)
242 2zr9_A Protein RECA, recombina 86.7 0.59 2E-05 42.0 4.4 40 26-73 61-100 (349)
243 1x88_A Kinesin-like protein KI 86.5 0.42 1.5E-05 43.0 3.3 24 21-44 82-107 (359)
244 3ber_A Probable ATP-dependent 86.5 2.4 8.1E-05 35.9 7.9 72 242-317 111-193 (249)
245 3a8t_A Adenylate isopentenyltr 86.5 0.38 1.3E-05 42.7 2.9 17 28-44 42-58 (339)
246 3i5x_A ATP-dependent RNA helic 86.4 11 0.00039 36.0 13.7 76 62-145 339-418 (563)
247 3bfn_A Kinesin-like protein KI 86.4 0.45 1.5E-05 43.1 3.4 30 14-43 77-116 (388)
248 2heh_A KIF2C protein; kinesin, 86.4 0.47 1.6E-05 43.0 3.5 24 22-45 129-154 (387)
249 1kgd_A CASK, peripheral plasma 86.0 0.49 1.7E-05 37.9 3.2 18 25-42 4-21 (180)
250 1xjc_A MOBB protein homolog; s 86.0 0.97 3.3E-05 35.7 4.8 25 28-53 6-30 (169)
251 3exa_A TRNA delta(2)-isopenten 86.0 0.42 1.4E-05 41.9 2.9 17 28-44 5-21 (322)
252 2wbe_C Bipolar kinesin KRP-130 86.0 0.47 1.6E-05 42.9 3.3 23 22-44 95-119 (373)
253 3cob_A Kinesin heavy chain-lik 86.0 0.42 1.5E-05 43.1 3.0 24 20-43 72-97 (369)
254 3u06_A Protein claret segregat 85.9 0.49 1.7E-05 43.4 3.4 25 19-43 130-156 (412)
255 3foz_A TRNA delta(2)-isopenten 85.8 0.44 1.5E-05 41.7 2.9 17 28-44 12-28 (316)
256 1ofh_A ATP-dependent HSL prote 85.7 1.2 4E-05 39.0 5.9 18 26-43 50-67 (310)
257 3cf0_A Transitional endoplasmi 85.6 0.73 2.5E-05 40.4 4.3 18 26-43 49-66 (301)
258 3hws_A ATP-dependent CLP prote 85.6 0.87 3E-05 41.2 5.0 19 25-43 50-68 (363)
259 2owm_A Nckin3-434, related to 85.5 0.57 2E-05 43.4 3.7 24 21-44 130-155 (443)
260 2rep_A Kinesin-like protein KI 85.4 0.53 1.8E-05 42.6 3.3 24 21-44 109-134 (376)
261 1xp8_A RECA protein, recombina 85.4 0.77 2.6E-05 41.5 4.4 40 26-73 74-113 (366)
262 1cr0_A DNA primase/helicase; R 85.4 0.83 2.9E-05 39.9 4.6 41 23-70 32-72 (296)
263 2oxc_A Probable ATP-dependent 85.3 1.8 6.3E-05 36.0 6.6 71 241-316 91-172 (230)
264 1lv7_A FTSH; alpha/beta domain 85.3 1 3.4E-05 38.4 5.0 17 27-43 46-62 (257)
265 1ojl_A Transcriptional regulat 85.2 0.49 1.7E-05 41.6 3.1 19 25-43 24-42 (304)
266 3vaa_A Shikimate kinase, SK; s 84.9 0.59 2E-05 38.1 3.2 19 25-43 24-42 (199)
267 2gza_A Type IV secretion syste 84.8 0.57 1.9E-05 42.4 3.3 19 24-42 173-191 (361)
268 3u4q_B ATP-dependent helicase/ 84.8 0.81 2.8E-05 48.6 4.9 50 29-84 4-53 (1166)
269 1qhx_A CPT, protein (chloramph 84.7 0.47 1.6E-05 37.7 2.5 18 26-43 3-20 (178)
270 1vma_A Cell division protein F 84.7 0.96 3.3E-05 39.7 4.6 17 28-44 106-122 (306)
271 3trf_A Shikimate kinase, SK; a 84.7 0.59 2E-05 37.4 3.1 19 26-44 5-23 (185)
272 3sqw_A ATP-dependent RNA helic 84.5 16 0.00055 35.2 13.7 77 62-146 288-368 (579)
273 3b9p_A CG5977-PA, isoform A; A 84.5 0.91 3.1E-05 39.6 4.5 18 26-43 54-71 (297)
274 3tau_A Guanylate kinase, GMP k 84.5 0.62 2.1E-05 38.3 3.2 19 25-43 7-25 (208)
275 1tue_A Replication protein E1; 84.5 0.46 1.6E-05 38.8 2.3 23 27-50 59-81 (212)
276 2ius_A DNA translocase FTSK; n 84.5 1.4 4.9E-05 41.6 5.9 25 26-51 167-191 (512)
277 2ehv_A Hypothetical protein PH 84.4 1.1 3.6E-05 37.9 4.8 23 22-44 26-48 (251)
278 2jgn_A DBX, DDX3, ATP-dependen 84.2 3.8 0.00013 32.8 7.7 71 62-143 46-120 (185)
279 3vfd_A Spastin; ATPase, microt 84.2 0.97 3.3E-05 41.3 4.7 19 26-44 148-166 (389)
280 2pl3_A Probable ATP-dependent 84.1 3.7 0.00013 34.1 8.0 71 241-316 96-177 (236)
281 3lw7_A Adenylate kinase relate 84.1 0.47 1.6E-05 37.5 2.2 17 28-44 3-19 (179)
282 1nlf_A Regulatory protein REPA 84.0 1.5 5.1E-05 37.9 5.6 26 22-47 26-51 (279)
283 1t5i_A C_terminal domain of A 83.7 7.4 0.00025 30.5 9.2 71 62-143 31-105 (172)
284 2ze6_A Isopentenyl transferase 83.6 0.63 2.2E-05 39.7 2.9 16 28-43 3-18 (253)
285 2i4i_A ATP-dependent RNA helic 83.6 7.4 0.00025 35.5 10.5 72 61-143 275-350 (417)
286 1xti_A Probable ATP-dependent 83.6 3.4 0.00011 37.4 8.1 73 242-317 76-159 (391)
287 2gxq_A Heat resistant RNA depe 83.5 3.3 0.00011 33.6 7.3 73 241-317 71-151 (207)
288 1zp6_A Hypothetical protein AT 83.5 0.38 1.3E-05 38.8 1.5 20 23-42 6-25 (191)
289 1zu4_A FTSY; GTPase, signal re 83.5 1.1 3.9E-05 39.6 4.6 18 28-45 107-124 (320)
290 2qor_A Guanylate kinase; phosp 83.4 0.72 2.5E-05 37.7 3.1 21 23-43 9-29 (204)
291 1w36_B RECB, exodeoxyribonucle 83.4 2.5 8.7E-05 44.8 8.0 60 27-86 17-80 (1180)
292 1lvg_A Guanylate kinase, GMP k 83.1 0.78 2.7E-05 37.4 3.2 18 25-42 3-20 (198)
293 2pt7_A CAG-ALFA; ATPase, prote 83.1 0.53 1.8E-05 41.9 2.3 18 24-41 169-186 (330)
294 3d8b_A Fidgetin-like protein 1 82.9 1.1 3.8E-05 40.4 4.4 19 26-44 117-135 (357)
295 3iij_A Coilin-interacting nucl 82.9 0.75 2.6E-05 36.6 3.0 19 25-43 10-28 (180)
296 3ly5_A ATP-dependent RNA helic 82.8 7.7 0.00026 32.9 9.6 73 241-317 125-208 (262)
297 1xwi_A SKD1 protein; VPS4B, AA 82.6 0.7 2.4E-05 41.0 2.9 17 27-43 46-62 (322)
298 1u0j_A DNA replication protein 82.5 1.2 4.1E-05 38.0 4.2 17 28-44 106-122 (267)
299 3crm_A TRNA delta(2)-isopenten 82.5 0.73 2.5E-05 40.7 2.9 17 28-44 7-23 (323)
300 1vec_A ATP-dependent RNA helic 82.0 4 0.00014 33.0 7.2 72 241-316 70-152 (206)
301 1gvn_B Zeta; postsegregational 81.9 0.57 1.9E-05 40.8 2.0 16 28-43 35-50 (287)
302 1y63_A LMAJ004144AAA protein; 81.9 0.7 2.4E-05 37.1 2.4 18 26-43 10-27 (184)
303 2z43_A DNA repair and recombin 81.8 1.6 5.3E-05 38.8 4.9 57 26-84 107-164 (324)
304 3d3q_A TRNA delta(2)-isopenten 81.8 0.79 2.7E-05 40.7 2.9 17 28-44 9-25 (340)
305 1ry6_A Internal kinesin; kines 81.7 0.93 3.2E-05 40.7 3.4 20 25-44 82-103 (360)
306 2j41_A Guanylate kinase; GMP, 81.7 0.89 3.1E-05 37.1 3.1 19 24-42 4-22 (207)
307 1kag_A SKI, shikimate kinase I 81.7 0.77 2.6E-05 36.2 2.6 18 26-43 4-21 (173)
308 1v5w_A DMC1, meiotic recombina 81.5 1 3.4E-05 40.4 3.5 45 26-72 122-166 (343)
309 3ney_A 55 kDa erythrocyte memb 81.4 1 3.5E-05 36.6 3.2 18 25-42 18-35 (197)
310 2j37_W Signal recognition part 81.3 9.3 0.00032 36.0 10.1 35 28-70 103-137 (504)
311 3kb2_A SPBC2 prophage-derived 81.2 0.68 2.3E-05 36.4 2.1 16 28-43 3-18 (173)
312 3iuy_A Probable ATP-dependent 81.2 2.8 9.5E-05 34.7 6.0 73 241-317 93-174 (228)
313 1ly1_A Polynucleotide kinase; 81.2 0.71 2.4E-05 36.7 2.2 16 28-43 4-19 (181)
314 2r2a_A Uncharacterized protein 80.9 1.1 3.8E-05 36.5 3.3 19 28-46 7-25 (199)
315 3tr0_A Guanylate kinase, GMP k 80.8 1 3.6E-05 36.6 3.2 18 25-42 6-23 (205)
316 1um8_A ATP-dependent CLP prote 80.8 1 3.5E-05 40.9 3.4 18 26-43 72-89 (376)
317 3eph_A TRNA isopentenyltransfe 80.8 1.3 4.4E-05 40.4 3.9 17 28-44 4-20 (409)
318 1rj9_A FTSY, signal recognitio 80.8 1.8 6.1E-05 38.0 4.8 17 26-42 102-118 (304)
319 2c9o_A RUVB-like 1; hexameric 80.7 0.91 3.1E-05 42.6 3.1 18 27-44 64-81 (456)
320 1np6_A Molybdopterin-guanine d 80.4 2.1 7.2E-05 33.9 4.7 25 27-52 7-31 (174)
321 1c9k_A COBU, adenosylcobinamid 80.4 0.82 2.8E-05 36.5 2.3 46 29-86 2-47 (180)
322 4gp7_A Metallophosphoesterase; 80.4 0.71 2.4E-05 36.6 1.9 19 25-43 8-26 (171)
323 2iut_A DNA translocase FTSK; n 80.4 2.4 8.3E-05 40.5 5.8 26 26-52 214-239 (574)
324 3b9q_A Chloroplast SRP recepto 80.3 1.7 6E-05 38.0 4.6 17 27-43 101-117 (302)
325 1q57_A DNA primase/helicase; d 80.1 1.3 4.3E-05 42.2 3.9 53 23-83 239-291 (503)
326 3a00_A Guanylate kinase, GMP k 80.0 1.2 4.1E-05 35.7 3.2 16 27-42 2-17 (186)
327 2r62_A Cell division protease 79.9 0.62 2.1E-05 40.0 1.6 19 26-44 44-62 (268)
328 1kht_A Adenylate kinase; phosp 79.9 0.87 3E-05 36.5 2.4 18 26-43 3-20 (192)
329 3i32_A Heat resistant RNA depe 79.8 17 0.00057 31.6 10.7 71 62-143 28-102 (300)
330 2v3c_C SRP54, signal recogniti 79.8 1.5 5E-05 40.7 4.1 34 28-69 101-134 (432)
331 3bor_A Human initiation factor 79.7 2.9 0.0001 34.9 5.7 73 241-316 97-179 (237)
332 4fcw_A Chaperone protein CLPB; 79.6 1.2 4E-05 39.2 3.3 17 27-43 48-64 (311)
333 2yvu_A Probable adenylyl-sulfa 79.5 2.1 7.3E-05 34.1 4.6 18 26-43 13-30 (186)
334 1z6g_A Guanylate kinase; struc 79.5 1.3 4.5E-05 36.6 3.4 18 25-42 22-39 (218)
335 1nks_A Adenylate kinase; therm 79.5 2.7 9.4E-05 33.5 5.3 16 28-43 3-18 (194)
336 4eun_A Thermoresistant glucoki 79.0 1 3.4E-05 36.7 2.5 19 25-43 28-46 (200)
337 1knq_A Gluconate kinase; ALFA/ 78.8 0.82 2.8E-05 36.2 1.9 18 26-43 8-25 (175)
338 1ex7_A Guanylate kinase; subst 78.7 0.98 3.3E-05 36.3 2.2 16 27-42 2-17 (186)
339 2d7d_A Uvrabc system protein B 78.5 35 0.0012 33.5 13.7 77 62-149 445-525 (661)
340 1yks_A Genome polyprotein [con 78.1 3.5 0.00012 38.3 6.2 69 62-142 177-245 (440)
341 1zuh_A Shikimate kinase; alpha 77.9 2.2 7.4E-05 33.4 4.1 18 27-44 8-25 (168)
342 1s96_A Guanylate kinase, GMP k 77.9 1.1 3.9E-05 37.1 2.5 20 23-42 13-32 (219)
343 1ye8_A Protein THEP1, hypothet 77.9 1.7 5.8E-05 34.6 3.4 15 28-42 2-16 (178)
344 1ixz_A ATP-dependent metallopr 77.2 1.4 4.7E-05 37.4 2.9 17 27-43 50-66 (254)
345 2og2_A Putative signal recogni 77.2 2.4 8.1E-05 38.1 4.5 17 27-43 158-174 (359)
346 3e70_C DPA, signal recognition 77.0 2.5 8.4E-05 37.5 4.6 16 27-42 130-145 (328)
347 3t61_A Gluconokinase; PSI-biol 77.0 1.1 3.7E-05 36.5 2.2 17 27-43 19-35 (202)
348 2yhs_A FTSY, cell division pro 77.0 2.3 7.9E-05 39.9 4.5 15 28-42 295-309 (503)
349 1gku_B Reverse gyrase, TOP-RG; 76.8 3.9 0.00013 42.8 6.6 75 242-318 99-183 (1054)
350 1g8p_A Magnesium-chelatase 38 76.6 1.4 4.8E-05 39.4 3.0 18 26-43 45-62 (350)
351 2bdt_A BH3686; alpha-beta prot 76.6 1.2 4E-05 35.8 2.2 17 27-43 3-19 (189)
352 1znw_A Guanylate kinase, GMP k 76.6 1.7 5.7E-05 35.6 3.2 21 22-42 16-36 (207)
353 1in4_A RUVB, holliday junction 76.5 1.5 5.3E-05 39.0 3.1 17 27-43 52-68 (334)
354 3fht_A ATP-dependent RNA helic 76.4 9.9 0.00034 34.5 8.8 71 62-143 266-340 (412)
355 1htw_A HI0065; nucleotide-bind 76.4 1.5 5.2E-05 34.1 2.7 25 25-50 32-56 (158)
356 1j8m_F SRP54, signal recogniti 76.4 2.3 7.9E-05 37.1 4.1 18 28-45 100-117 (297)
357 2x8a_A Nuclear valosin-contain 76.3 2.4 8.3E-05 36.5 4.2 17 27-43 45-61 (274)
358 3nwj_A ATSK2; P loop, shikimat 76.2 2 6.8E-05 36.4 3.6 18 26-43 48-65 (250)
359 2rhm_A Putative kinase; P-loop 76.1 1.1 3.8E-05 36.0 2.0 17 27-43 6-22 (193)
360 3f9v_A Minichromosome maintena 76.1 1.4 4.9E-05 42.7 3.0 16 28-43 329-344 (595)
361 1rz3_A Hypothetical protein rb 76.1 2.9 0.0001 33.9 4.5 16 28-43 24-39 (201)
362 3cm0_A Adenylate kinase; ATP-b 75.9 1.2 4.2E-05 35.5 2.1 18 26-43 4-21 (186)
363 3fb4_A Adenylate kinase; psych 75.8 2.5 8.4E-05 34.7 4.0 17 28-44 2-18 (216)
364 1tev_A UMP-CMP kinase; ploop, 75.8 1.3 4.4E-05 35.6 2.2 17 27-43 4-20 (196)
365 1zd8_A GTP:AMP phosphotransfer 75.7 1.6 5.5E-05 36.3 2.9 18 26-43 7-24 (227)
366 1hv8_A Putative ATP-dependent 75.7 11 0.00037 33.5 8.7 72 62-144 238-313 (367)
367 4h1g_A Maltose binding protein 75.6 1.8 6.1E-05 43.2 3.6 25 19-43 454-480 (715)
368 1via_A Shikimate kinase; struc 75.6 1.9 6.5E-05 34.0 3.1 18 27-44 5-22 (175)
369 1f2t_A RAD50 ABC-ATPase; DNA d 75.5 2 6.7E-05 33.1 3.1 16 27-42 24-39 (149)
370 2c95_A Adenylate kinase 1; tra 75.3 3.2 0.00011 33.3 4.5 19 25-43 8-26 (196)
371 1c4o_A DNA nucleotide excision 75.2 34 0.0012 33.6 12.6 77 62-149 439-519 (664)
372 2iyv_A Shikimate kinase, SK; t 75.0 3.2 0.00011 33.0 4.4 17 27-43 3-19 (184)
373 2xxa_A Signal recognition part 75.0 3.1 0.00011 38.5 4.8 35 28-69 102-136 (433)
374 3uie_A Adenylyl-sulfate kinase 74.9 1.6 5.6E-05 35.4 2.6 19 25-43 24-42 (200)
375 3pey_A ATP-dependent RNA helic 74.9 12 0.00041 33.7 8.8 75 62-147 243-321 (395)
376 3cmw_A Protein RECA, recombina 74.8 3.8 0.00013 44.7 6.0 42 25-74 33-74 (1706)
377 3pxg_A Negative regulator of g 74.8 2.3 7.8E-05 40.0 3.9 25 26-51 201-225 (468)
378 1e6c_A Shikimate kinase; phosp 74.6 3.6 0.00012 32.2 4.6 17 27-43 3-19 (173)
379 3dl0_A Adenylate kinase; phosp 74.2 1.4 4.9E-05 36.2 2.2 16 28-43 2-17 (216)
380 1g41_A Heat shock protein HSLU 74.1 3 0.0001 38.6 4.4 18 26-43 50-67 (444)
381 3zq6_A Putative arsenical pump 74.1 3.2 0.00011 36.7 4.6 35 28-70 16-50 (324)
382 1iy2_A ATP-dependent metallopr 74.0 1.9 6.4E-05 37.2 2.9 17 27-43 74-90 (278)
383 2db3_A ATP-dependent RNA helic 73.9 23 0.00077 32.6 10.5 69 64-143 302-374 (434)
384 3lnc_A Guanylate kinase, GMP k 73.8 1.3 4.3E-05 37.1 1.7 18 25-42 26-43 (231)
385 2bwj_A Adenylate kinase 5; pho 73.8 1.8 6E-05 35.0 2.6 19 25-43 11-29 (199)
386 1byi_A Dethiobiotin synthase; 73.5 4.2 0.00014 33.4 5.0 34 29-70 5-38 (224)
387 4a74_A DNA repair and recombin 73.5 1.4 4.8E-05 36.5 2.0 19 25-43 24-42 (231)
388 3sr0_A Adenylate kinase; phosp 73.4 2.5 8.6E-05 34.6 3.4 16 29-44 3-18 (206)
389 1nij_A Hypothetical protein YJ 73.4 2.1 7.2E-05 37.8 3.1 14 28-41 6-19 (318)
390 2v54_A DTMP kinase, thymidylat 73.3 1.8 6.1E-05 35.1 2.5 18 26-43 4-21 (204)
391 3tlx_A Adenylate kinase 2; str 73.3 4 0.00014 34.3 4.8 17 27-43 30-46 (243)
392 1qde_A EIF4A, translation init 73.1 3.7 0.00013 33.8 4.5 71 241-316 81-161 (224)
393 1m7g_A Adenylylsulfate kinase; 73.1 2 6.9E-05 35.2 2.8 30 13-43 13-42 (211)
394 2cdn_A Adenylate kinase; phosp 73.0 1.5 5.2E-05 35.6 2.0 17 27-43 21-37 (201)
395 1aky_A Adenylate kinase; ATP:A 72.9 3.9 0.00013 33.7 4.6 17 27-43 5-21 (220)
396 1qf9_A UMP/CMP kinase, protein 72.8 3.4 0.00012 32.9 4.1 16 28-43 8-23 (194)
397 2qt1_A Nicotinamide riboside k 72.7 1.2 4.1E-05 36.4 1.3 19 25-43 20-38 (207)
398 3c8u_A Fructokinase; YP_612366 72.6 1.8 6.1E-05 35.4 2.3 17 26-42 22-38 (208)
399 2vhj_A Ntpase P4, P4; non- hyd 72.5 2.1 7.2E-05 37.7 2.8 24 25-48 122-145 (331)
400 2v9p_A Replication protein E1; 72.4 2.1 7.3E-05 37.4 2.9 18 25-42 125-142 (305)
401 3umf_A Adenylate kinase; rossm 72.4 2.7 9.3E-05 34.7 3.4 18 27-44 30-47 (217)
402 1s2m_A Putative ATP-dependent 72.4 19 0.00065 32.5 9.6 71 62-143 258-332 (400)
403 2pt5_A Shikimate kinase, SK; a 72.3 1.8 6.1E-05 33.8 2.2 16 28-43 2-17 (168)
404 3tqc_A Pantothenate kinase; bi 72.3 6.8 0.00023 34.5 6.1 14 29-42 95-108 (321)
405 3kta_A Chromosome segregation 72.2 2.3 7.8E-05 33.8 2.9 16 27-42 27-42 (182)
406 2woo_A ATPase GET3; tail-ancho 72.2 3.6 0.00012 36.5 4.4 34 28-69 21-54 (329)
407 3cmu_A Protein RECA, recombina 72.2 3.1 0.00011 46.1 4.6 48 23-79 1078-1125(2050)
408 2i3b_A HCR-ntpase, human cance 72.1 2.7 9.4E-05 33.8 3.3 41 135-178 103-145 (189)
409 1wrb_A DJVLGB; RNA helicase, D 72.0 6.1 0.00021 33.3 5.7 72 242-317 100-181 (253)
410 3ug7_A Arsenical pump-driving 72.0 5.3 0.00018 35.7 5.5 33 29-69 29-61 (349)
411 1ukz_A Uridylate kinase; trans 71.9 1.8 6.1E-05 35.2 2.2 16 28-43 17-32 (203)
412 3k1j_A LON protease, ATP-depen 71.8 3.4 0.00012 40.3 4.4 21 23-43 57-77 (604)
413 2pez_A Bifunctional 3'-phospho 71.7 1.7 5.9E-05 34.4 2.0 18 26-43 5-22 (179)
414 1ak2_A Adenylate kinase isoenz 71.7 4.3 0.00015 33.8 4.6 19 26-44 16-34 (233)
415 1jjv_A Dephospho-COA kinase; P 71.5 1.8 6.2E-05 35.2 2.2 16 28-43 4-19 (206)
416 3asz_A Uridine kinase; cytidin 71.5 1.5 5.3E-05 35.8 1.7 17 26-42 6-22 (211)
417 1zak_A Adenylate kinase; ATP:A 71.5 2.5 8.6E-05 34.9 3.1 17 27-43 6-22 (222)
418 2j0s_A ATP-dependent RNA helic 71.4 15 0.0005 33.4 8.6 71 62-143 276-350 (410)
419 3bs4_A Uncharacterized protein 70.9 5.3 0.00018 34.0 4.9 51 26-85 21-71 (260)
420 3a4m_A L-seryl-tRNA(SEC) kinas 70.9 1.9 6.6E-05 36.7 2.2 17 27-43 5-21 (260)
421 2jaq_A Deoxyguanosine kinase; 70.9 2.5 8.6E-05 34.2 2.9 16 28-43 2-17 (205)
422 3cmw_A Protein RECA, recombina 70.8 3.2 0.00011 45.3 4.3 45 26-78 1431-1475(1706)
423 2plr_A DTMP kinase, probable t 70.8 2 6.7E-05 35.1 2.2 18 26-43 4-21 (213)
424 3tif_A Uncharacterized ABC tra 70.8 1.9 6.4E-05 36.2 2.1 17 25-41 30-46 (235)
425 1ihu_A Arsenical pump-driving 70.8 4.4 0.00015 39.3 5.0 35 27-69 9-43 (589)
426 3tqf_A HPR(Ser) kinase; transf 70.6 2.3 7.7E-05 33.6 2.3 20 25-44 15-34 (181)
427 3qf7_A RAD50; ABC-ATPase, ATPa 70.6 3 0.0001 37.6 3.6 16 28-43 25-40 (365)
428 2vli_A Antibiotic resistance p 70.4 1.6 5.6E-05 34.6 1.6 18 26-43 5-22 (183)
429 1tf7_A KAIC; homohexamer, hexa 70.2 3.8 0.00013 39.1 4.4 40 25-72 280-319 (525)
430 2pbr_A DTMP kinase, thymidylat 70.2 2 6.9E-05 34.4 2.2 15 29-43 3-17 (195)
431 1cke_A CK, MSSA, protein (cyti 70.2 2.7 9.1E-05 34.8 2.9 17 27-43 6-22 (227)
432 2if2_A Dephospho-COA kinase; a 70.0 2 6.7E-05 35.0 2.0 16 28-43 3-18 (204)
433 2ph1_A Nucleotide-binding prot 69.9 4.7 0.00016 34.3 4.5 33 29-69 22-54 (262)
434 2f1r_A Molybdopterin-guanine d 69.9 1.8 6.2E-05 34.2 1.7 16 28-43 4-19 (171)
435 2wv9_A Flavivirin protease NS2 69.9 8.4 0.00029 38.0 6.8 69 62-142 410-478 (673)
436 2wwf_A Thymidilate kinase, put 69.8 2.1 7.2E-05 34.9 2.2 19 25-43 9-27 (212)
437 2z0h_A DTMP kinase, thymidylat 69.4 2.2 7.5E-05 34.3 2.2 15 29-43 3-17 (197)
438 1g3q_A MIND ATPase, cell divis 69.4 4.9 0.00017 33.4 4.4 32 30-69 7-38 (237)
439 3be4_A Adenylate kinase; malar 69.2 4.9 0.00017 33.0 4.4 17 27-43 6-22 (217)
440 2xau_A PRE-mRNA-splicing facto 69.1 24 0.00083 35.4 10.0 76 62-143 303-393 (773)
441 2cbz_A Multidrug resistance-as 69.1 2.2 7.4E-05 35.9 2.1 17 25-41 30-46 (237)
442 2v6i_A RNA helicase; membrane, 69.0 7.2 0.00025 36.0 5.9 68 62-141 171-238 (431)
443 1hyq_A MIND, cell division inh 69.0 5.4 0.00019 33.8 4.7 33 29-69 6-38 (263)
444 2xb4_A Adenylate kinase; ATP-b 68.8 5 0.00017 33.1 4.3 15 29-43 3-17 (223)
445 1gtv_A TMK, thymidylate kinase 68.8 2.1 7.1E-05 35.0 2.0 22 29-51 3-24 (214)
446 2bbw_A Adenylate kinase 4, AK4 68.7 2.4 8.4E-05 35.7 2.4 17 26-42 27-43 (246)
447 1sgw_A Putative ABC transporte 68.6 2.5 8.4E-05 34.9 2.3 17 25-41 34-50 (214)
448 1nn5_A Similar to deoxythymidy 68.6 2.3 8E-05 34.7 2.2 18 26-43 9-26 (215)
449 3pxi_A Negative regulator of g 68.4 6.7 0.00023 39.4 5.9 23 28-51 523-545 (758)
450 2p5t_B PEZT; postsegregational 68.4 1.7 5.7E-05 37.0 1.3 16 28-43 34-49 (253)
451 1e4v_A Adenylate kinase; trans 68.3 2.8 9.6E-05 34.4 2.7 16 28-43 2-17 (214)
452 3lda_A DNA repair protein RAD5 68.3 3.4 0.00012 37.7 3.4 45 26-72 178-222 (400)
453 1wp9_A ATP-dependent RNA helic 67.9 29 0.001 32.0 10.1 96 35-147 340-447 (494)
454 3auy_A DNA double-strand break 67.8 3.5 0.00012 37.3 3.4 16 27-42 26-41 (371)
455 3nh6_A ATP-binding cassette SU 67.3 2.2 7.5E-05 37.4 1.9 18 25-42 79-96 (306)
456 2jlq_A Serine protease subunit 67.3 10 0.00036 35.2 6.7 69 62-142 188-256 (451)
457 3q9l_A Septum site-determining 67.3 5.6 0.00019 33.6 4.4 32 29-68 6-37 (260)
458 1yrb_A ATP(GTP)binding protein 67.2 5.6 0.00019 33.6 4.4 33 28-69 16-48 (262)
459 2grj_A Dephospho-COA kinase; T 67.2 6 0.0002 31.8 4.3 15 29-43 15-29 (192)
460 3ice_A Transcription terminati 67.1 17 0.00057 33.0 7.4 30 14-43 159-191 (422)
461 3qks_A DNA double-strand break 67.0 4.2 0.00014 33.1 3.5 17 26-42 23-39 (203)
462 4dzz_A Plasmid partitioning pr 67.0 4.9 0.00017 32.5 3.9 32 30-69 6-37 (206)
463 3gfo_A Cobalt import ATP-bindi 66.9 2.4 8.4E-05 36.5 2.0 17 25-41 33-49 (275)
464 1uf9_A TT1252 protein; P-loop, 66.8 3.2 0.00011 33.5 2.7 16 28-43 10-25 (203)
465 3iqw_A Tail-anchored protein t 66.8 5.3 0.00018 35.5 4.3 35 28-70 18-52 (334)
466 3pxi_A Negative regulator of g 66.6 4.1 0.00014 40.9 3.9 25 26-51 201-225 (758)
467 2ff7_A Alpha-hemolysin translo 66.3 2.6 8.8E-05 35.6 2.0 17 25-41 34-50 (247)
468 2pze_A Cystic fibrosis transme 66.2 2.7 9.1E-05 35.1 2.1 17 25-41 33-49 (229)
469 2ghi_A Transport protein; mult 65.9 2.7 9.3E-05 35.8 2.1 17 25-41 45-61 (260)
470 4e22_A Cytidylate kinase; P-lo 65.8 3.9 0.00013 34.6 3.2 18 26-43 27-44 (252)
471 2r2a_A Uncharacterized protein 65.5 5.1 0.00017 32.5 3.6 40 138-177 88-132 (199)
472 3b6e_A Interferon-induced heli 65.4 18 0.00061 29.1 7.1 56 241-300 81-140 (216)
473 4g1u_C Hemin import ATP-bindin 65.4 2.7 9.3E-05 36.0 2.1 17 25-41 36-52 (266)
474 1tf7_A KAIC; homohexamer, hexa 65.3 5.5 0.00019 38.0 4.4 30 24-53 37-66 (525)
475 4akg_A Glutathione S-transfera 65.3 2.6 9E-05 48.2 2.4 22 22-43 1263-1284(2695)
476 1vht_A Dephospho-COA kinase; s 65.3 3 0.0001 34.3 2.2 16 28-43 6-21 (218)
477 2pcj_A ABC transporter, lipopr 65.2 2.6 8.9E-05 35.0 1.8 17 25-41 29-45 (224)
478 3cio_A ETK, tyrosine-protein k 65.1 7 0.00024 34.0 4.7 33 29-69 107-140 (299)
479 1odf_A YGR205W, hypothetical 3 65.1 3.8 0.00013 35.6 2.9 15 29-43 34-48 (290)
480 3kjh_A CO dehydrogenase/acetyl 65.1 5.8 0.0002 33.2 4.1 32 29-68 3-34 (254)
481 3bfv_A CAPA1, CAPB2, membrane 64.9 6.7 0.00023 33.6 4.4 32 29-68 85-117 (271)
482 3dkp_A Probable ATP-dependent 64.8 4.8 0.00016 33.7 3.5 75 241-318 97-183 (245)
483 1qvr_A CLPB protein; coiled co 64.7 4.9 0.00017 41.0 4.1 23 28-51 590-612 (854)
484 2www_A Methylmalonic aciduria 64.6 7.4 0.00025 34.8 4.8 23 28-51 76-98 (349)
485 2woj_A ATPase GET3; tail-ancho 64.4 6.1 0.00021 35.4 4.2 37 29-71 21-57 (354)
486 2qm8_A GTPase/ATPase; G protei 64.4 6.6 0.00023 34.9 4.4 18 25-42 54-71 (337)
487 3p32_A Probable GTPase RV1496/ 64.4 7 0.00024 35.0 4.7 23 28-51 81-103 (355)
488 1g6h_A High-affinity branched- 64.3 2.9 0.0001 35.5 2.0 17 25-41 32-48 (257)
489 1ji0_A ABC transporter; ATP bi 64.0 3 0.0001 35.0 2.0 17 25-41 31-47 (240)
490 1b0u_A Histidine permease; ABC 64.0 3.1 0.00011 35.5 2.2 17 25-41 31-47 (262)
491 1mv5_A LMRA, multidrug resista 64.0 2.6 9E-05 35.5 1.7 17 25-41 27-43 (243)
492 1vpl_A ABC transporter, ATP-bi 63.9 3.2 0.00011 35.3 2.2 17 25-41 40-56 (256)
493 2zu0_C Probable ATP-dependent 63.9 3.2 0.00011 35.6 2.2 17 25-41 45-61 (267)
494 2dhr_A FTSH; AAA+ protein, hex 63.7 3 0.0001 39.4 2.1 17 27-43 65-81 (499)
495 3iwh_A Rhodanese-like domain p 63.5 5.4 0.00018 28.3 3.0 37 240-276 54-90 (103)
496 1uj2_A Uridine-cytidine kinase 63.5 3.3 0.00011 35.0 2.2 16 28-43 24-39 (252)
497 3la6_A Tyrosine-protein kinase 63.4 7.7 0.00026 33.5 4.6 31 30-68 97-127 (286)
498 3eme_A Rhodanese-like domain p 63.2 5.4 0.00019 28.1 3.0 37 240-276 54-90 (103)
499 2qi9_C Vitamin B12 import ATP- 63.2 3.3 0.00011 35.1 2.1 17 25-41 25-41 (249)
500 1ltq_A Polynucleotide kinase; 63.1 3.3 0.00011 36.0 2.2 16 28-43 4-19 (301)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-59 Score=444.76 Aligned_cols=351 Identities=43% Similarity=0.689 Sum_probs=314.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++++|||||||++|++|++..+..........++++||++||++|+.|++++
T Consensus 69 ~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 69 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999998876443344578999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+.++.... ++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+||||++.+.++...+..+
T Consensus 149 ~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i 227 (434)
T 2db3_A 149 ARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRI 227 (434)
T ss_dssp HHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHH
Confidence 99987653 68888999999988888888888999999999999999888788899999999999999999999999999
Q ss_pred HhhC--CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcC
Q 013962 162 MQNL--PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 162 ~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
+..+ ++..|++++|||++..+......++.++..+...........+.+.+..+....+...+...+...
T Consensus 228 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~-------- 299 (434)
T 2db3_A 228 MTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-------- 299 (434)
T ss_dssp HHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--------
T ss_pred HHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--------
Confidence 8875 567899999999999999999999999998888877777778888888888888877776665432
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
. .++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 300 -~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~ 377 (434)
T 2db3_A 300 -A-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM 377 (434)
T ss_dssp -C-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC
T ss_pred -C-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC
Confidence 1 23999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEecc-ccHHHHHHHHHHhhh
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTD-RDMLLVAQIKKAIVD 363 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~d~~~~~~~~~~~~~ 363 (433)
|.+...|+||+||+||.|+.|.+++++.+ .+......+.+.+..
T Consensus 378 p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~ 422 (434)
T 2db3_A 378 PSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEG 422 (434)
T ss_dssp CSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 466666667666543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-57 Score=427.22 Aligned_cols=353 Identities=45% Similarity=0.767 Sum_probs=305.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-------------CCCCCceEEEE
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-------------GRGDGPLALVL 68 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~-------------~~~~~~~~lvl 68 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+...... .+..++++||+
T Consensus 28 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 107 (417)
T 2i4i_A 28 GNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVL 107 (417)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEE
T ss_pred HHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEE
Confidence 45678899999999999999999999999999999999999999999988764321 12234689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccch
Q 013962 69 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 148 (433)
Q Consensus 69 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~ 148 (433)
+|+++|+.|+++++.++.... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~ 186 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186 (417)
T ss_dssp CSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH
T ss_pred CCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH
Confidence 999999999999999987653 6889999999988887777778899999999999999988777888999999999999
Q ss_pred hccCCCHHHHHHHHhh--CCC--CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHH
Q 013962 149 MLDMGFEPQIREVMQN--LPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 224 (433)
Q Consensus 149 ~~~~~~~~~~~~~~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (433)
+.++++...+..++.. ++. ..+++++|||++.........++.++..+...........+.+.+..+....+...+
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 266 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFL 266 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHH
Confidence 9999999999998874 332 578999999999999999999999988887776666677778888887777766655
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 013962 225 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASR 304 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 304 (433)
...+.. ...+.++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 267 ~~~l~~--------~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 267 LDLLNA--------TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp HHHHHT--------CCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred HHHHHh--------cCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 544432 135578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 305 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 305 Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
|+|+|++++||++++|.|...|+||+||+||.|+.|.+++++.+.|......+.+.+..
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888777654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.1e-57 Score=426.20 Aligned_cols=347 Identities=35% Similarity=0.583 Sum_probs=306.2
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ..+.++||++|+++|+.|++++
T Consensus 50 ~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 50 RGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCceEEEEcCcHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999998876432 2377899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ++.+..+.|+.........+..+++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 125 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i 203 (410)
T 2j0s_A 125 LLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203 (410)
T ss_dssp HHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHH
Confidence 99987654 68888899999888777777778899999999999999888778888999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (433)
+..+++..+++++|||++.........++.++..+...........+.+.+..+.... +...+...+...
T Consensus 204 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--------- 274 (410)
T 2j0s_A 204 YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--------- 274 (410)
T ss_dssp HTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH---------
T ss_pred HHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc---------
Confidence 9999889999999999999888888888888887776666666667777777666544 444444433321
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
...++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCC
Confidence 23479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
++...|+||+||+||.|+.|.+++++.+.|...++.+++.+..
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998888876653
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.8e-55 Score=413.43 Aligned_cols=345 Identities=33% Similarity=0.557 Sum_probs=300.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ..+.+++|++|+++|+.|+++.
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~ 108 (400)
T 1s2m_A 34 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQALIMVPTRELALQTSQV 108 (400)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEEEEcCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999886542 1367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ++.+....|+............+++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 109 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i 187 (400)
T 1s2m_A 109 VRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQI 187 (400)
T ss_dssp HHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHH
T ss_pred HHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHH
Confidence 99988654 68888899998877776667788999999999999988887777889999999999999887788888888
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+..+++..+++++|||++.........++..+..+.... ......+.+.+.......+...+...+.. ..
T Consensus 188 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~---------~~ 257 (400)
T 1s2m_A 188 LSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQKLHCLNTLFSK---------LQ 257 (400)
T ss_dssp HTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGGHHHHHHHHHHH---------SC
T ss_pred HHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhhHHHHHHHHHhh---------cC
Confidence 888888899999999999999988888888876654433 23344566666666666665554444322 24
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 321 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~ 321 (433)
.+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~ 337 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK 337 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
|...|+||+||+||.|+.|.|++++++.|...++.+++.+.
T Consensus 338 s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 338 TAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999988888887654
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-54 Score=409.43 Aligned_cols=346 Identities=31% Similarity=0.533 Sum_probs=298.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
++|..+||.+|+|+|.++++.+++++++++.+|||+|||++++++++..+... ..+.++||++|+++|+.|++++
T Consensus 21 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil~P~~~L~~q~~~~ 95 (391)
T 1xti_A 21 RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVMCHTRELAFQISKE 95 (391)
T ss_dssp HHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEECCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998876442 2366899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC-CCHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIR 159 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~ 159 (433)
+.++....+++.+..+.|+.........+. ..++|+|+||+.+...+......+.++++||+||||++.++ ++...+.
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 175 (391)
T 1xti_A 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 175 (391)
T ss_dssp HHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHH
T ss_pred HHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHH
Confidence 999987777899999999988776665554 45799999999999998887777889999999999999874 5677788
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcC-CCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhc
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
.++...+...+++++|||++.........++..+..+...... .....+.+.+.......+...+...+..
T Consensus 176 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------- 247 (391)
T 1xti_A 176 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV-------- 247 (391)
T ss_dssp HHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH--------
T ss_pred HHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh--------
Confidence 8888888899999999999999999999999988877665433 2334566666667666666655554432
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
..++++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 248 -~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 248 -LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp -SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred -cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 2456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHHh
Q 013962 319 LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAI 361 (433)
Q Consensus 319 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~~ 361 (433)
.|+|...|+||+||+||.|++|.+++++.+.+ ...+..+++.+
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 99999999999999999999999999998764 45556666544
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=418.16 Aligned_cols=347 Identities=35% Similarity=0.578 Sum_probs=290.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+|+..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.+++|++|+++|+.|+++.
T Consensus 53 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 53 RGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-----KATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----CceeEEEEeChHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999999998875432 377899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+..+.... +..+....|+.........+. .+++|+|+||++|.+.+......+..+++||+||||++.+.++...+..
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 206 (414)
T 3eiq_A 128 VMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYD 206 (414)
T ss_dssp HHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHH
T ss_pred HHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHH
Confidence 99987664 677888888887766655554 6789999999999999988877888899999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (433)
++..+++..+++++|||++.........++.++..+...........+.+.+......+ +...+...+..
T Consensus 207 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 277 (414)
T 3eiq_A 207 IFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET--------- 277 (414)
T ss_dssp HHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS---------
T ss_pred HHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh---------
Confidence 99999999999999999999999999999999888877666666677777777666554 43333333221
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL 319 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 319 (433)
...+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~ 357 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 357 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 320 PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 320 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
|+|...|+||+||+||.|++|.+++++++.|...++.+++.+..
T Consensus 358 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 358 PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp CSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTC
T ss_pred CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999888888776643
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-54 Score=401.67 Aligned_cols=340 Identities=40% Similarity=0.616 Sum_probs=297.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++..+||.+|+|+|.++++.++++ +++++.+|||+|||++++++++..+... .+.+++|++|+++|+.|+++
T Consensus 19 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~ 92 (367)
T 1hv8_A 19 NAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAIILTPTRELAIQVAD 92 (367)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEEEECSCHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEEEEcCCHHHHHHHHH
Confidence 4577889999999999999999988 6899999999999999999988876542 37789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
++..++... ++.+....|+........... +++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..
T Consensus 93 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 170 (367)
T 1hv8_A 93 EIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEK 170 (367)
T ss_dssp HHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHH
T ss_pred HHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHH
Confidence 999998653 678888888888766555444 689999999999999988777788999999999999999889999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCC
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
++..+++..+++++|||++.........++.++..+.... ...+.+.+.......+...+...+. .
T Consensus 171 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~----------~ 236 (367)
T 1hv8_A 171 ILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLLK----------N 236 (367)
T ss_dssp HHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHHC----------S
T ss_pred HHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHHh----------c
Confidence 9999988999999999999998888888888766554432 2355566666666666655554442 3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
.+.++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 44669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
+|+..|.||+||+||.|++|.+++++++.|...++.+++.+..
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998888877643
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-53 Score=405.00 Aligned_cols=344 Identities=30% Similarity=0.475 Sum_probs=292.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+.... .++++||++|+++|+.|++
T Consensus 38 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~ 112 (412)
T 3fht_A 38 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTG 112 (412)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-----CCCCEEEECCCHHHHHHHH
Confidence 4567899999999999999999987 89999999999999999999998875532 3668999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhcc-CCCHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLD-MGFEPQ 157 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~-~~~~~~ 157 (433)
+.+..+.....++.+....++...... .....+|+|+||+++.+.+.. ....+.++++||+||||++.+ .++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 189 (412)
T 3fht_A 113 KVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 189 (412)
T ss_dssp HHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHH
T ss_pred HHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHH
Confidence 999999877677888888877653321 234579999999999988865 445667899999999999986 568888
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhh
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAE 236 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 236 (433)
+..+...++...+++++|||++.........++.++..+...........+.+.+....... +...+...+..
T Consensus 190 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 263 (412)
T 3fht_A 190 SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA------ 263 (412)
T ss_dssp HHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHH------
T ss_pred HHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhh------
Confidence 88888888889999999999999999999999999988877776666777777776665543 33333333322
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
...+++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 264 ---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 264 ---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp ---HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred ---cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 23357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC------ChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHHhh
Q 013962 317 LDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAIV 362 (433)
Q Consensus 317 ~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~~~ 362 (433)
++.|+ +...|+||+||+||.|+.|.+++++.+.+ ......+++.+.
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 99994 67899999999999999999999998765 566667766554
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.5e-53 Score=400.59 Aligned_cols=343 Identities=30% Similarity=0.505 Sum_probs=289.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||.+|+|+|.++++.++++ +++++.+|||+|||++++++++..+.... .+.++||++|+++|+.|++
T Consensus 18 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~ 92 (395)
T 3pey_A 18 KGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQAICLAPSRELARQTL 92 (395)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCccEEEECCCHHHHHHHH
Confidence 4677899999999999999999988 89999999999999999999998865432 3778999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQI 158 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~~~~ 158 (433)
+.+..+.... ++.+....++.... ....+++|+|+||+.|.+.+......+.++++||+||||++.+ .++...+
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 167 (395)
T 3pey_A 93 EVVQEMGKFT-KITSQLIVPDSFEK----NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQC 167 (395)
T ss_dssp HHHHHHTTTS-CCCEEEESTTSSCT----TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHH
T ss_pred HHHHHHhccc-CeeEEEEecCchhh----hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHH
Confidence 9999987654 56677766664322 1223689999999999999988777888999999999999987 5677888
Q ss_pred HHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhc
Q 013962 159 REVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
..+...++...+++++|||++.........++..+..+...........+.+.+............+..+..
T Consensus 168 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 239 (395)
T 3pey_A 168 IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG-------- 239 (395)
T ss_dssp HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHT--------
T ss_pred HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHH--------
Confidence 888888888999999999999999999999998888877766666666677776666544332222222211
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD 318 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 318 (433)
....+++||||+++..++.+++.|+..+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 240 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 240 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 13457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHHhh
Q 013962 319 LPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAIV 362 (433)
Q Consensus 319 ~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~~~ 362 (433)
.|+ |+..|+||+||+||.|+.|.+++++...+ ......+++.+.
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 998 99999999999999999999999998654 455566665554
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.8e-53 Score=418.81 Aligned_cols=355 Identities=30% Similarity=0.465 Sum_probs=290.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||.+|+|+|.++++.++ .++++++.+|||+|||++|++|++..+..... ....+.++||++|+++|+.|++
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~La~Q~~ 112 (579)
T 3sqw_A 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRDLALQIE 112 (579)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHHHHHHHH
Confidence 46778999999999999999999 67899999999999999999999998877532 1223568999999999999999
Q ss_pred HHHHHHhcc---CCCceEEEEECCCCHHHHHHHh-hCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCC
Q 013962 80 KEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 80 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
+++..++.. ...+.+..+.|+.........+ ..+++|+|+||++|.+++... ...+..+++||+||||++.++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf 192 (579)
T 3sqw_A 113 AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 192 (579)
T ss_dssp HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCC
Confidence 999998642 2456788888888877665555 347899999999998887653 33567899999999999999999
Q ss_pred HHHHHHHHhhCC-------CCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCC----CCCCceEEEEEcCc-hhhHH
Q 013962 155 EPQIREVMQNLP-------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS----PTANVIQILEKVSE-NEKVD 222 (433)
Q Consensus 155 ~~~~~~~~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 222 (433)
...+..++..++ ...+++++|||+++.+......++..+..+....... ....+.+.+..... .....
T Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 272 (579)
T 3sqw_A 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF 272 (579)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHH
Confidence 998888876553 3678999999999999999888988877665543221 22333444433333 22333
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC---CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 013962 223 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299 (433)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 299 (433)
.....+..... ...++.++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 273 ~~~~~l~~~~~----~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 273 AAVEHIKKQIK----ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 348 (579)
T ss_dssp HHHHHHHHHHH----HTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHh----hcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc
Confidence 33333333222 1244567999999999999999999887 8899999999999999999999999999999999
Q ss_pred cccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 300 ~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+.|...++.+++..
T Consensus 349 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 349 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp GGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred chhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888887654
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-53 Score=419.56 Aligned_cols=355 Identities=30% Similarity=0.464 Sum_probs=288.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||.+|+|+|.++++.++ .++++++.+|||+|||++|++|++..+...... ...+.++||++|+++|+.|++
T Consensus 85 ~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~La~Q~~ 163 (563)
T 3i5x_A 85 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRDLALQIE 163 (563)
T ss_dssp HHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHHHHHHHH
Confidence 45678899999999999999999 568999999999999999999999998775321 223568999999999999999
Q ss_pred HHHHHHhcc---CCCceEEEEECCCCHHHHHHHh-hCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCC
Q 013962 80 KEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 80 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
+++..+... .....+..+.|+.........+ ..+++|+|+||++|.+++.+. ...+..+++||+||||++.++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f 243 (563)
T 3i5x_A 164 AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGF 243 (563)
T ss_dssp HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccch
Confidence 999997643 2356678888888776655554 457899999999998887653 23467799999999999999999
Q ss_pred HHHHHHHHhhC-------CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCC----CCCCceEEEEEcCc-hhhHH
Q 013962 155 EPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS----PTANVIQILEKVSE-NEKVD 222 (433)
Q Consensus 155 ~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 222 (433)
...+..++..+ .+..|++++|||++..+......++..+..+....... ....+.+.+..... .....
T Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (563)
T 3i5x_A 244 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF 323 (563)
T ss_dssp HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred HHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHH
Confidence 98888886654 23678999999999999998888888877665543222 22233343333332 23333
Q ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC---CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 013962 223 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT 299 (433)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 299 (433)
.....+..... ...++.++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 324 ~~~~~l~~~~~----~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT 399 (563)
T 3i5x_A 324 AAVEHIKKQIK----ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 399 (563)
T ss_dssp HHHHHHHHHHH----HTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHh----hcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc
Confidence 33333333221 1244578999999999999999999886 8899999999999999999999999999999999
Q ss_pred cccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 300 DVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 300 ~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++.+.|...++.+++..
T Consensus 400 ~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 400 DVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp GGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred chhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888887664
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.4e-53 Score=389.16 Aligned_cols=328 Identities=36% Similarity=0.573 Sum_probs=278.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++++++++.. +.+++|++|+++|+.|++++
T Consensus 7 ~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELTRQVASH 75 (337)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999988775 77899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+.++.... +..+..+.|+........... +++|+|+||+.|.+.+......+.++++||+||||++.++++...+..+
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 76 IRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 99987654 678888888887766555443 4899999999999988877777788999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 241 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+..++...+++++|||++.........++.++..+... ....++.+.+.......+. ....+ ....
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~ 219 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQAL---------RENK 219 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHH---------HTCC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHH---------HhCC
Confidence 99999889999999999999999999998887766432 2233444555554443221 11111 1145
Q ss_pred CCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK 321 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~ 321 (433)
+.++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 5679999999999999998886 588999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 322 TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
|+..|+||+||+||.|++|.+++++. .|....+.+++.+
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999 7877777776554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4e-55 Score=412.71 Aligned_cols=344 Identities=35% Similarity=0.578 Sum_probs=168.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+.... .++++||++|+++|+.|++++
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 34 RGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----CCCCEEEEcCCHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999998865432 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+.++.... ++.+..+.|+........... +++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 109 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~ 186 (394)
T 1fuu_A 109 VMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 186 (394)
T ss_dssp HHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHH
Confidence 99987654 688888999888765554443 5799999999999998887777888999999999999998899999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcCC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCH 240 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (433)
+..+++..+++++|||++.........++..+..+...........+.+.+....... +...+...+.. .
T Consensus 187 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~ 257 (394)
T 1fuu_A 187 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDS---------I 257 (394)
T ss_dssp HHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------------------
T ss_pred HHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhc---------C
Confidence 9999999999999999999988888899988888776655444444444444333322 22222222211 2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP 320 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~ 320 (433)
..+++||||++++.++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p 337 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCC
Confidence 33569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 321 KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 321 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
++...|+||+||+||.|++|.+++++.+.|...++.+++.+
T Consensus 338 ~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 378 (394)
T 1fuu_A 338 ANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 378 (394)
T ss_dssp -----------------------------------------
T ss_pred CCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999998887777776544
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.6e-52 Score=403.72 Aligned_cols=327 Identities=17% Similarity=0.285 Sum_probs=260.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+++.+..+
T Consensus 40 fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVisP~~~L~~q~~~~l~~~- 107 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVICPLISLMEDQLMVLKQL- 107 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEECSCHHHHHHHHHHHHHH-
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEeCHHHHHHHHHHHHHhc-
Confidence 79999999999999999999999999999999999999998753 668999999999999999999986
Q ss_pred ccCCCceEEEEECCCCHHHHHHH------hhCCCcEEEeccHHHH------HHHHcCCCCCCCccEEEEcccchhccCC-
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFL------DHLQQGNTSLSRVSFVILDEADRMLDMG- 153 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ivv~T~~~l~------~~~~~~~~~~~~~~~vIiDE~h~~~~~~- 153 (433)
++.+..+.++......... .....+|+|+||++|. +.+.. ...+.++++|||||||++.+++
T Consensus 108 ----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 ----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp ----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCT
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECccccccccc
Confidence 6778888888876654432 2467899999999874 22222 2335679999999999999877
Q ss_pred -CHHHHHH--HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHH
Q 013962 154 -FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 230 (433)
Q Consensus 154 -~~~~~~~--~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (433)
|...+.. .+....+..+++++|||+++.....+..++..+........ ...+++...+..... ........+.+
T Consensus 183 dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~--~~~~~~~~l~~ 259 (591)
T 2v1x_A 183 DFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQKPS--NTEDFIEDIVK 259 (591)
T ss_dssp TCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEECCS--SHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeCCC--cHHHHHHHHHH
Confidence 5555443 23333347889999999999988888887765544333322 223333333332221 11222222222
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCC
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMG 310 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 310 (433)
... ...++.++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|.+|+++|||||+++++|+|+|+
T Consensus 260 ~l~----~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~ 335 (591)
T 2v1x_A 260 LIN----GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPD 335 (591)
T ss_dssp HHT----TTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSC
T ss_pred HHH----HhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccc
Confidence 211 1135578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 311 VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 311 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
+++||++++|.|...|+|++||+||.|.+|.|++++.+.|......+
T Consensus 336 V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 336 VRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999887765554
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.7e-54 Score=414.59 Aligned_cols=343 Identities=30% Similarity=0.480 Sum_probs=161.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+++..+||.+|+|+|.++++.++++ +++++.+|||||||++|++|++..+.... .++++||++|+++|+.|++
T Consensus 105 ~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-----~~~~~lil~Pt~~La~Q~~ 179 (479)
T 3fmp_B 105 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTG 179 (479)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-----CSCCEEEECSSHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-----CCCcEEEEeChHHHHHHHH
Confidence 4577899999999999999999987 89999999999999999999988765432 2558999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhcc-CCCHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLD-MGFEPQ 157 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~-~~~~~~ 157 (433)
+.+..+.....++.+....++..... ......+|+|+||++|.+++.+ ....+.++++||+||+|++.+ .++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~ 256 (479)
T 3fmp_B 180 KVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256 (479)
T ss_dssp HHHHHHHTTSTTCCEEEESTTCCCCT---TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHH
T ss_pred HHHHHHHhhCCCceEEEEeCCccccc---cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHH
Confidence 99999988777788888777754322 1124568999999999998865 345668899999999999986 567778
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCch-hhHHHHHHHHHHHHHhhh
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLLALLVEEAFLAE 236 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 236 (433)
+..+...++...|++++|||++.........++.++..+...........+.+.+..+... .+...+...+..
T Consensus 257 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 330 (479)
T 3fmp_B 257 SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA------ 330 (479)
T ss_dssp HHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------------
T ss_pred HHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhh------
Confidence 8888888888999999999999999999999999988887776655555555555544432 232332222221
Q ss_pred hcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE
Q 013962 237 KSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 237 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
....++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 331 ---~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 331 ---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 22356999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC------ChhHHHhhcccCCCCCCceeEEEEecccc-HHHHHHHHHHh
Q 013962 317 LDLPK------TVEDYVHRIGRTGRGGSMGQATSFYTDRD-MLLVAQIKKAI 361 (433)
Q Consensus 317 ~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d-~~~~~~~~~~~ 361 (433)
+++|. +...|+||+||+||.|..|.+++++.+.+ ...+..+++.+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp ----------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 99994 56899999999999999999999998765 45555554443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.3e-51 Score=395.21 Aligned_cols=325 Identities=22% Similarity=0.345 Sum_probs=258.2
Q ss_pred ccc-CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 4 IEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 4 ~~~-~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
+.. +||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. .+.+||++|+++|+.|+++.+
T Consensus 17 l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp HHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEEECChHHHHHHHHHHH
Confidence 444 89999999999999999999999999999999999999998754 567999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHH----HhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEP 156 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~ 156 (433)
..+ ++.+..+.++........ ...+..+|+|+||++|............++++|||||||++.+++ +..
T Consensus 86 ~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~ 160 (523)
T 1oyw_A 86 QAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP 160 (523)
T ss_dssp HHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH
Confidence 875 577888888877554432 234678999999999853222112234678999999999999876 555
Q ss_pred HHHH---HHhhCCCCCcEEEEEeecchHHHHHHHHhcC--CCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHH
Q 013962 157 QIRE---VMQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 231 (433)
Q Consensus 157 ~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
.+.. +...++ ..+++++|||++......+...+. ++...... ...+++...+. ....+...+...+..
T Consensus 161 ~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l~~~v~--~~~~~~~~l~~~l~~- 233 (523)
T 1oyw_A 161 EYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNIRYMLM--EKFKPLDQLMRYVQE- 233 (523)
T ss_dssp HHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTEEEEEE--ECSSHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCceEEEEE--eCCCHHHHHHHHHHh-
Confidence 4443 344554 678999999999887665555443 44333222 12233333222 223444444444432
Q ss_pred HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC
Q 013962 232 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV 311 (433)
Q Consensus 232 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 311 (433)
.++.++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 234 --------~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v 305 (523)
T 1oyw_A 234 --------QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNV 305 (523)
T ss_dssp --------TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTC
T ss_pred --------cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCc
Confidence 244679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 312 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 312 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
++||+++.|+|...|+|++||+||.|.+|.+++++++.|....+.+..
T Consensus 306 ~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988776665543
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-52 Score=401.53 Aligned_cols=341 Identities=30% Similarity=0.499 Sum_probs=250.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+.+...|+..|+++|.++++.++++ +++++.+|||+|||++|+++++..+.... .++++||++|+++|+.|++
T Consensus 132 ~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-----~~~~vLvl~P~~~L~~Q~~ 206 (508)
T 3fho_A 132 XXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV-----PKPQAICLAPSRELARQIM 206 (508)
T ss_dssp -------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-----CSCCEEEECSCHHHHHHHH
T ss_pred cccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-----CCceEEEEECcHHHHHHHH
Confidence 4567789999999999999999987 89999999999999999999998875532 3668999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCHHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQI 158 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~~~~ 158 (433)
+++..++... ++.+....++.... ....+++|+|+||+.+.+.+......+.++++||+||||++.+ .++...+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 207 DVVTEMGKYT-EVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp HHHHHHSTTS-SCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred HHHHHhCCcc-CeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHH
Confidence 9999987653 34444444433221 2234689999999999999888877888999999999999987 5688889
Q ss_pred HHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhh
Q 013962 159 REVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRLLALLVEEAFLAEK 237 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 237 (433)
..+...++...+++++|||++.........+..++..+...........+.+.+....... +...+...+..
T Consensus 282 ~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~------- 354 (508)
T 3fho_A 282 MRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL------- 354 (508)
T ss_dssp HHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--------
T ss_pred HHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh-------
Confidence 9999999989999999999999999999999988887766655555555555555554333 33322222211
Q ss_pred cCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEc
Q 013962 238 SCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNL 317 (433)
Q Consensus 238 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 317 (433)
...+++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 355 --~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 355 --LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp ----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC-
T ss_pred --cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEE
Confidence 234679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC------CChhHHHhhcccCCCCCCceeEEEEecc-ccHHHHHHHHHHh
Q 013962 318 DLP------KTVEDYVHRIGRTGRGGSMGQATSFYTD-RDMLLVAQIKKAI 361 (433)
Q Consensus 318 ~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~d~~~~~~~~~~~ 361 (433)
+.| .|...|+||+||+||.|+.|.+++++.. .+......+++.+
T Consensus 433 ~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~ 483 (508)
T 3fho_A 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYF 483 (508)
T ss_dssp ---CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHS
T ss_pred CCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHH
Confidence 999 7899999999999999999999999975 4445556665544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.3e-49 Score=373.99 Aligned_cols=318 Identities=21% Similarity=0.268 Sum_probs=250.8
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+|+ +|+|+|.++++.+++++++++.+|||+|||++++++++.... .++++||++|+++|+.|+++.+..+.
T Consensus 18 ~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 18 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp HSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred cCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 456 799999999999999999999999999999999888777652 27889999999999999999999987
Q ss_pred ccCCCceEEEEECCCCH---HHHHHHhhC-CCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-----------
Q 013962 87 RSLDSFKTAIVVGGTNI---AEQRSELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD----------- 151 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~----------- 151 (433)
. .++.+..+.|+... ......+.. .++|+|+||++|.+.+.. ..+.++++||+||||++..
T Consensus 89 ~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 89 D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 6 47899999999987 333444444 499999999999877764 5566899999999997764
Q ss_pred CCCHHH-HHHHHhhCC-----------CCCcEEEEEee-cchHHH-HHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCc
Q 013962 152 MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE 217 (433)
Q Consensus 152 ~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (433)
.++... +..++..++ ...|++++||| ++.... .....++. +..........++.+.+...
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS-- 238 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS--
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc--
Confidence 456666 677777665 78899999999 454433 22223322 11222233344555555444
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee-eecCCCCHHHHHHHHHHHhcCCCcEE
Q 013962 218 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNIL 296 (433)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vl 296 (433)
.+...+...+... +.++||||+++..++.+++.|...++.+. .+||. +|. ++.|++|+++||
T Consensus 239 -~~~~~l~~~l~~~----------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 239 -RSKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp -CCHHHHHHHHHHH----------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred -CHHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 3334444444331 15599999999999999999999999998 99984 444 999999999999
Q ss_pred EE----ecccccCcccCC-CcEEEEccCC--CChhHHHhhcccCCCCC----CceeEEEEeccccHHHHHHHHHHhh
Q 013962 297 VA----TDVASRGLDVMG-VAHVVNLDLP--KTVEDYVHRIGRTGRGG----SMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 297 v~----T~~~~~Gidip~-~~~Vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
|| |+++++|+|+|+ +++||+++.| .+...|+||+||+||.| ..|.+++++ .|...+..+++.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99 999999999999 9999999999 99999999999999987 468888888 66677777777665
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.3e-47 Score=375.87 Aligned_cols=333 Identities=20% Similarity=0.277 Sum_probs=196.1
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
++.-+|+|+|.++++.+++++++++.+|||+|||++|++|++..+.... ...+.++||++|+++|+.||++++..++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999999999999999998876642 2236789999999999999999999998
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCCCHHHH-HHHHhh
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQN 164 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~~~~~~-~~~~~~ 164 (433)
... ++.+..+.|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+++....+ ..++..
T Consensus 80 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 80 ERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 764 6889999998876655555556689999999999999988766 7888999999999999876532222 222221
Q ss_pred ----CCCCCcEEEEEeecchH-----------HHHHHHHhcCCCeEEEecCc-------CCCCCCceEEEEEc--C----
Q 013962 165 ----LPDKHQTLLFSATMPVE-----------IEALAQEYLTDPVQVKVGKV-------SSPTANVIQILEKV--S---- 216 (433)
Q Consensus 165 ----~~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~---- 216 (433)
..+..+++++||||+.. +..... .+.... +..... ....+......... .
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCS-YLDIQA-ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHH-HHTCSE-EECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHH-hcCCeE-ecchhcchHHHHhcCCCCceEEEEcCCCcCChHH
Confidence 13567899999999531 111111 111111 111000 00000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 013962 217 -------------------------------------------------------------------------------- 216 (433)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (433)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 316 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------chhhHHHHHHHHHHHHHhhhhcCCCCC
Q 013962 217 -----------------------------------------------------ENEKVDRLLALLVEEAFLAEKSCHPFP 243 (433)
Q Consensus 217 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (433)
...+...+...+.+. ....++.
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~-----~~~~~~~ 391 (556)
T 4a2p_A 317 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA-----YRYNPQT 391 (556)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH-----HHHCTTC
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH-----hcCCCCc
Confidence 000111111111111 0114457
Q ss_pred eEEEEEeccccHHHHHHHHHHC------------CCceeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCcccCC
Q 013962 244 LTIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMG 310 (433)
Q Consensus 244 ~~lvf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~ 310 (433)
++||||+++..++.+++.|... |.....+||+|+..+|..+++.|++ |+++|||||+++++|+|+|+
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 471 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchh
Confidence 8999999999999999999876 4455566788999999999999999 99999999999999999999
Q ss_pred CcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 311 VAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 311 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
+++||+||+|+|+..|+||+|| ||. .+|.+++++...+..
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999999999999 998 779999999887654
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.3e-47 Score=386.67 Aligned_cols=345 Identities=21% Similarity=0.281 Sum_probs=216.2
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+|+.+|+|+|.++++.+++++++++++|||+|||++|+++++..+.... ...+.++||++|+++|+.||+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999998876642 11237899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCC-CHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIR 159 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~-~~~~~~ 159 (433)
+.+++... ++.+..+.|+.........+..+++|+|+||+.|.+.+..... .+.++++|||||||++.+.. +...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998643 6889999998765444444555689999999999999887665 67889999999999988654 222222
Q ss_pred HHHhh-----CCCCCcEEEEEeecc-------hHHHHHHHH----------------------hcCCCeEEEecCcCCCC
Q 013962 160 EVMQN-----LPDKHQTLLFSATMP-------VEIEALAQE----------------------YLTDPVQVKVGKVSSPT 205 (433)
Q Consensus 160 ~~~~~-----~~~~~~~i~~SAT~~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 205 (433)
..+.. .++..++++|||||. ......+.. +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22221 245689999999996 121111111 11122111100000000
Q ss_pred CC---------------------------------------------------ceEEEEEc-------------------
Q 013962 206 AN---------------------------------------------------VIQILEKV------------------- 215 (433)
Q Consensus 206 ~~---------------------------------------------------~~~~~~~~------------------- 215 (433)
.. ........
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 00 00000000
Q ss_pred ---------------------------------------------------------CchhhHHHHHHHHHHHHHhhhhc
Q 013962 216 ---------------------------------------------------------SENEKVDRLLALLVEEAFLAEKS 238 (433)
Q Consensus 216 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
....+...+...+... ..
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~-----~~ 394 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE-----YH 394 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH-----HT
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----hc
Confidence 0011111111111111 11
Q ss_pred CCCCCeEEEEEeccccHHHHHHHHHHCC----Cceeee--------cCCCCHHHHHHHHHHHhc-CCCcEEEEecccccC
Q 013962 239 CHPFPLTIVFVERKTRCDEVSEALVAEG----LHAVAL--------HGGRNQSDRESALRDFRN-GSTNILVATDVASRG 305 (433)
Q Consensus 239 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~G 305 (433)
..++.++||||+++..++.+++.|...+ +.+..+ |++|+..+|..+++.|++ |+++|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 2345679999999999999999999987 788888 559999999999999998 999999999999999
Q ss_pred cccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 306 LDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 306 idip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
+|+|++++||+||+|+|+..|+||+|| ||. .+|.++++++..+....+.+
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999 998 67999999988776444433
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-46 Score=388.05 Aligned_cols=319 Identities=20% Similarity=0.247 Sum_probs=249.3
Q ss_pred ccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
++...++..|+|+|.++++.+.+++++++++|||||||++|+++++..+.. +.+++|++|+++|+.|+++.+
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEcCcHHHHHHHHHHH
Confidence 344556668999999999999999999999999999999999999988754 789999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
..++. .++.++|+.. ...+++|+|+||++|.+.+......+.++++|||||||++.++++...+..++
T Consensus 248 ~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii 315 (1108)
T 3l9o_A 248 LAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 315 (1108)
T ss_dssp HHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHH
T ss_pred HHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHH
Confidence 99864 5777888875 34668999999999999998877667889999999999999888888999999
Q ss_pred hhCCCCCcEEEEEeecchH--HHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC---------chh-----h------
Q 013962 163 QNLPDKHQTLLFSATMPVE--IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------ENE-----K------ 220 (433)
Q Consensus 163 ~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~------ 220 (433)
..+++..++++||||++.. +..++......+..+......+.+ +.+.+.... ... .
T Consensus 316 ~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~ 393 (1108)
T 3l9o_A 316 ILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 393 (1108)
T ss_dssp HHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSSCCEEEEETTTEECHHHHHHHHT
T ss_pred HhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCcceeeeeccccchhhhhHHHHHH
Confidence 9999999999999998765 335566666666555443322221 122111100 000 0
Q ss_pred --------------------------------HHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCc
Q 013962 221 --------------------------------VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 268 (433)
Q Consensus 221 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 268 (433)
...+.. +..... .....++||||+++..|+.++..|...++.
T Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~l~-----~~~~~~vIVF~~sr~~~e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 394 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYK-IVKMIW-----KKKYNPVIVFSFSKRDCEELALKMSKLDFN 467 (1108)
T ss_dssp TC-----------------------------CHHHHHH-HHHHHH-----HTTCCCEEEEESCHHHHHHHHHHTCSHHHH
T ss_pred HHHhhhcccccccccccccccccccccccccchhHHHH-HHHHHH-----hcCCCCEEEEeCcHHHHHHHHHHHHhccCC
Confidence 011111 111111 123467999999999999999988553221
Q ss_pred ---------------------------------------eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC
Q 013962 269 ---------------------------------------AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM 309 (433)
Q Consensus 269 ---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 309 (433)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|
T Consensus 468 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP 547 (1108)
T 3l9o_A 468 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 547 (1108)
T ss_dssp CC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC-
T ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCC
Confidence 78899999999999999999999999999999999999999
Q ss_pred CCcEEEEccCC--------CChhHHHhhcccCCCCC--CceeEEEEeccc
Q 013962 310 GVAHVVNLDLP--------KTVEDYVHRIGRTGRGG--SMGQATSFYTDR 349 (433)
Q Consensus 310 ~~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 349 (433)
++++||+++.+ .|+.+|+||+||+||.| ..|.|++++.+.
T Consensus 548 ~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 548 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp -CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999977653 36778999999999999 578888888765
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-45 Score=378.70 Aligned_cols=325 Identities=21% Similarity=0.261 Sum_probs=253.3
Q ss_pred ccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..++|. |+|+|.++++.+.+++++++++|||+|||++|.++++..+.. +.+++|++|+++|+.|+++++..
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHH
Confidence 456674 999999999999999999999999999999999888877643 78999999999999999999999
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhh
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 164 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~ 164 (433)
++. .++.++|+... ..+++|+|+||++|.+.+.+....+.++++|||||+|++.+.++...+..++..
T Consensus 152 ~~~-----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 152 EFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HHS-----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HhC-----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 874 57778887653 346799999999999988887777889999999999999998889999999999
Q ss_pred CCCCCcEEEEEeecchHHH--HHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC---------chh-----hHH------
Q 013962 165 LPDKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------ENE-----KVD------ 222 (433)
Q Consensus 165 ~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~------ 222 (433)
++...+++++|||+++... .++......+..+......+ ..+.+.+.... ... ...
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 9999999999999986533 33333444455444332222 12222222110 000 000
Q ss_pred -------------------------------HHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCc---
Q 013962 223 -------------------------------RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH--- 268 (433)
Q Consensus 223 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~--- 268 (433)
..+..+...... ....++||||+++..|+.++..|...++.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHH-----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 000111111110 12346999999999999999998764432
Q ss_pred ------------------------------------eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCc
Q 013962 269 ------------------------------------AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVA 312 (433)
Q Consensus 269 ------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 312 (433)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 67899999999999999999999999999999999999999999
Q ss_pred EEEE----ccC----CCChhHHHhhcccCCCCCC--ceeEEEEeccc-cHHHHHHH
Q 013962 313 HVVN----LDL----PKTVEDYVHRIGRTGRGGS--MGQATSFYTDR-DMLLVAQI 357 (433)
Q Consensus 313 ~Vi~----~~~----~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-d~~~~~~~ 357 (433)
+||+ |+. |.|+.+|+||+||+||.|. .|.|++++.+. +...+..+
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9999 888 8899999999999999997 49999999765 44444443
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-46 Score=367.38 Aligned_cols=336 Identities=21% Similarity=0.250 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
+|+|+|.++++.+++++++++.+|||+|||++|++|++..+.... ...+.++||++|+++|+.||++++.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL- 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 799999999999999999999999999999999999998887642 1236789999999999999999999998765
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCC-CHHHHHHHHhhC---
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIREVMQNL--- 165 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~-~~~~~~~~~~~~--- 165 (433)
++.+..+.|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 7889999999866555455555689999999999999887766 67889999999999998764 222222333221
Q ss_pred --CCCCcEEEEEeecchHH--------HH--HHHHhcCCCeEEEecC------cCCCCCCceEEEEEcCc----------
Q 013962 166 --PDKHQTLLFSATMPVEI--------EA--LAQEYLTDPVQVKVGK------VSSPTANVIQILEKVSE---------- 217 (433)
Q Consensus 166 --~~~~~~i~~SAT~~~~~--------~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------- 217 (433)
.+..+++++||||+... .. .....+.......... .....+...........
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 24578999999995421 11 1112222111111000 00001111110000000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 218 -------------------------------------------------------------------------------- 217 (433)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (433)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred --------------------------------------------------hhhHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 013962 218 --------------------------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIV 247 (433)
Q Consensus 218 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 247 (433)
..+...+...+.+. ....+..++||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-----~~~~~~~k~lV 394 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEE-----YHLKPETKTIL 394 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH-----HHHCTTCCEEE
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHH-----hccCCCceEEE
Confidence 00111111111111 01134578999
Q ss_pred EEeccccHHHHHHHHHHCC------------CceeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCcccCCCcEE
Q 013962 248 FVERKTRCDEVSEALVAEG------------LHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGVAHV 314 (433)
Q Consensus 248 f~~~~~~~~~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~~~V 314 (433)
||+++..++.+++.|...+ .....+||+|+..+|..+++.|++ |+++|||||+++++|+|+|++++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999998864 234455669999999999999999 999999999999999999999999
Q ss_pred EEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 315 VNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 315 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
|+||+|+|+..|+||+|| ||. ..|.+++++++.+......+
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999 998 78999999988776544443
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.9e-45 Score=358.07 Aligned_cols=323 Identities=18% Similarity=0.205 Sum_probs=249.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
..|| +|+|+|..+++.+++|+ +..|+||+|||++|++|++...+. +..++||+||++|+.|.++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4789 99999999999999988 999999999999999999865543 678999999999999999999999
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEcccchhc-cCC----
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG---- 153 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~~~~~vIiDE~h~~~-~~~---- 153 (433)
+..+ +++++++.|+.+....... .+++|+|+||+.| ++++..+. ..++.+.++|+||||+++ +..
T Consensus 148 ~~~l-gl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFL-GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHT-TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 9886 7999999999887654443 3589999999999 77776542 456789999999999987 543
Q ss_pred -----------CHHHHHHHHhhCCC---------CCcEE-----------------EEEeecchH---HHHH--HHHhcC
Q 013962 154 -----------FEPQIREVMQNLPD---------KHQTL-----------------LFSATMPVE---IEAL--AQEYLT 191 (433)
Q Consensus 154 -----------~~~~~~~~~~~~~~---------~~~~i-----------------~~SAT~~~~---~~~~--~~~~~~ 191 (433)
+...+..++..+++ ..|++ ++|||.+.. +... +..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 44677778877763 45555 678876532 2211 111111
Q ss_pred -CCeEE--------------------------------------------------------------------------
Q 013962 192 -DPVQV-------------------------------------------------------------------------- 196 (433)
Q Consensus 192 -~~~~~-------------------------------------------------------------------------- 196 (433)
+..++
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11111
Q ss_pred ---------EecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCC
Q 013962 197 ---------KVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 267 (433)
Q Consensus 197 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 267 (433)
.++...+........+.+....++...+...+.+.. ..+.++||||+|++.++.+++.|...|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-------~~~~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-------MTGQPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-------HHTCCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-------hcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 000000000000112344566677777776665432 1234699999999999999999999999
Q ss_pred ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccC--------CCcEEEEccCCCChhHHHhhcccCCCCCCc
Q 013962 268 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSM 339 (433)
Q Consensus 268 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip--------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 339 (433)
++..+||++...++..+.+.|+.| .|+|||+++++|+|++ ++.+||+++.|.|...|+||+||+||+|.+
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 999999999888887776666665 5999999999999999 788999999999999999999999999999
Q ss_pred eeEEEEeccccH
Q 013962 340 GQATSFYTDRDM 351 (433)
Q Consensus 340 g~~~~~~~~~d~ 351 (433)
|.+++|++..|.
T Consensus 536 G~s~~~vs~eD~ 547 (844)
T 1tf5_A 536 GITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEEETTSS
T ss_pred CeEEEEecHHHH
Confidence 999999998774
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.6e-46 Score=378.47 Aligned_cols=336 Identities=19% Similarity=0.261 Sum_probs=203.9
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+|+.+|+|+|.++++.++.++++++++|||+|||++|++|++..+.... ...++++||++|+++|+.||++++.++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999998887642 223678999999999999999999999
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCCCH-HHHHHHHh
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFE-PQIREVMQ 163 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~~~-~~~~~~~~ 163 (433)
+... ++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+.+.. ..+..++.
T Consensus 320 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8754 7889999999876665666667799999999999999887666 6788999999999998875422 22222222
Q ss_pred h----CCCCCcEEEEEeecch-----------HHHHHHH------------------HhcCCCeEEEecCcCCCCCC---
Q 013962 164 N----LPDKHQTLLFSATMPV-----------EIEALAQ------------------EYLTDPVQVKVGKVSSPTAN--- 207 (433)
Q Consensus 164 ~----~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--- 207 (433)
. ..+..+++++||||.. .+..... .++..+..............
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 2 1456889999999952 1111111 11111111110000000000
Q ss_pred ---------------------ceEEE-EEcCc------------------------------------------------
Q 013962 208 ---------------------VIQIL-EKVSE------------------------------------------------ 217 (433)
Q Consensus 208 ---------------------~~~~~-~~~~~------------------------------------------------ 217 (433)
..... .....
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 00000
Q ss_pred -----------------------------------------------------hhhHHHHHHHHHHHHHhhhhcCCCCCe
Q 013962 218 -----------------------------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPL 244 (433)
Q Consensus 218 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (433)
..+...+...+.+. ....++.+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~-----~~~~~~~k 633 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA-----YRYNPQTR 633 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHH-----HHHCSSCC
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH-----hccCCCCe
Confidence 00011111111110 01144578
Q ss_pred EEEEEeccccHHHHHHHHHHC------------CCceeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCcccCCC
Q 013962 245 TIVFVERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGV 311 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~ 311 (433)
+||||+++..++.+++.|... |.....+||+|+..+|..+++.|++ |.++|||||+++++|+|+|++
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCC
T ss_pred EEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhC
Confidence 999999999999999999874 4456677889999999999999999 999999999999999999999
Q ss_pred cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 312 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 312 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
++||+|++|+|+..|+||+|| ||. .+|.++++++..+..
T Consensus 714 ~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999 999 779999999877654
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-45 Score=356.41 Aligned_cols=326 Identities=23% Similarity=0.272 Sum_probs=243.1
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
+|+|||.+++..++.+ ++++.+|||+|||++++.+++..+.. .+.++||++|+++|+.||++++.+++.. +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-P 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS-C
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc-c
Confidence 6999999999999998 99999999999999999998887653 2778999999999999999999998732 3
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 170 (433)
...+..+.|+........ ...+++|+|+||+.|...+......+.++++||+||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 458888888887665433 3345899999999999988877777888999999999999865444444455554556788
Q ss_pred EEEEEeecchH---HHHHHHHhcCCCeEEEecCcCC-----CCCCceEEEEEcCc-------------------------
Q 013962 171 TLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSS-----PTANVIQILEKVSE------------------------- 217 (433)
Q Consensus 171 ~i~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------- 217 (433)
+++|||||... +......+.............. ............+.
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 2233332221111111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013962 218 -------------------------------------------------------------------------------- 217 (433)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (433)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred -----------------------hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecC
Q 013962 218 -----------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 274 (433)
Q Consensus 218 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~ 274 (433)
..+...+...+.+.. ...++.++||||+++..++.+++.|...++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-----~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQL-----QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-----ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 001111111111100 0034678999999999999999999999999999999
Q ss_pred --------CCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEe
Q 013962 275 --------GRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 275 --------~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 346 (433)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+||+||.|+ |.++.++
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~ 472 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILM 472 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred ccccHH
Q 013962 347 TDRDML 352 (433)
Q Consensus 347 ~~~d~~ 352 (433)
.+.+..
T Consensus 473 ~~~t~e 478 (494)
T 1wp9_A 473 AKGTRD 478 (494)
T ss_dssp ETTSHH
T ss_pred ecCCHH
Confidence 877643
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-45 Score=371.82 Aligned_cols=324 Identities=19% Similarity=0.256 Sum_probs=245.6
Q ss_pred ccccCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+..+||.+|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.++++++|+++|+.|++++
T Consensus 22 ~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 22 IIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp HHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEEECSCHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEEEeCcHHHHHHHHHH
Confidence 35678999999999999999 77889999999999999999999999887643 77999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
++.+... ++.++..+|+...... ...+++|+|+||+++...+......+.++++||+||+|.+.+..+...+..+
T Consensus 95 ~~~~~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i 169 (715)
T 2va8_A 95 FKDWELI--GFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169 (715)
T ss_dssp HGGGGGG--TCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHH
T ss_pred HHHhhcC--CCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHH
Confidence 9655432 6888888888654332 1236899999999999988876655788999999999999887788888888
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceE-----------EEEEcCch----hhHHHHHH
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ-----------ILEKVSEN----EKVDRLLA 226 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~ 226 (433)
+..++ ..++|+||||+++. .... .++..+. +.... .+.+-... ........ ........
T Consensus 170 ~~~~~-~~~ii~lSATl~n~-~~~~-~~l~~~~-~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (715)
T 2va8_A 170 TIRAK-RRNLLALSATISNY-KQIA-KWLGAEP-VATNW--RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA 243 (715)
T ss_dssp HHHHH-TSEEEEEESCCTTH-HHHH-HHHTCEE-EECCC--CSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH
T ss_pred HHhcc-cCcEEEEcCCCCCH-HHHH-HHhCCCc-cCCCC--CCCCceEEEEecCCcccceeeecCcchhhhcccchHHHH
Confidence 87776 78999999999753 3333 3443321 11110 00000000 11111100 00012222
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCC------------------------------------Ccee
Q 013962 227 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------------------LHAV 270 (433)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------------~~~~ 270 (433)
.+.+.. .+++++||||+++++++.+++.|.... ..+.
T Consensus 244 ~~~~~~-------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 244 YTLDSL-------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp HHHHHH-------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred HHHHHH-------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 222221 234679999999999999999998642 2488
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----cc-------CCCChhHHHhhcccCCCCCC-
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD-------LPKTVEDYVHRIGRTGRGGS- 338 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~-------~~~s~~~~~Q~~GR~~R~g~- 338 (433)
.+||+++..+|..+++.|.+|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.|.
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999998 88 78999999999999999884
Q ss_pred -ceeEEEEeccccH
Q 013962 339 -MGQATSFYTDRDM 351 (433)
Q Consensus 339 -~g~~~~~~~~~d~ 351 (433)
.|.|+++++..+.
T Consensus 397 ~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 397 QIGESIVVVRDKED 410 (715)
T ss_dssp SCEEEEEECSCGGG
T ss_pred CCceEEEEeCCchH
Confidence 6899999987663
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.5e-45 Score=371.23 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=249.8
Q ss_pred ccccCCCCCCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
.+..+||..|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|+++|+.|++++
T Consensus 15 ~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 15 TLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp HHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEECSSGGGHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEEcCcHHHHHHHHHH
Confidence 45678999999999999998 78899999999999999999999999887753 78999999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
++.+... ++.++.++|+...... ...+++|+|+||+++...+.+....+.++++||+||+|++.+..+...+..+
T Consensus 88 ~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (720)
T 2zj8_A 88 FQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVI 162 (720)
T ss_dssp TGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHH
Confidence 9765443 6889999997654321 1246899999999998888876666788999999999999987888888888
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEE------EEcCch-hhHHHHHHHHHHHHHh
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL------EKVSEN-EKVDRLLALLVEEAFL 234 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~ 234 (433)
+..++...++|+||||+++. .. ...++..+. +... ..+. .+...+ ...... .........+.+..
T Consensus 163 l~~l~~~~~ii~lSATl~n~-~~-~~~~l~~~~-~~~~--~rp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (720)
T 2zj8_A 163 LAHMLGKAQIIGLSATIGNP-EE-LAEWLNAEL-IVSD--WRPV-KLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI-- 234 (720)
T ss_dssp HHHHBTTBEEEEEECCCSCH-HH-HHHHTTEEE-EECC--CCSS-EEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--
T ss_pred HHHhhcCCeEEEEcCCcCCH-HH-HHHHhCCcc-cCCC--CCCC-cceEEEEeCCeeeccccchhhhhHHHHHHHHHH--
Confidence 88887789999999999753 33 334443221 1111 1111 111111 111100 00011111221111
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHC---------------------------------CCceeeecCCCCHHHH
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLHAVALHGGRNQSDR 281 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~~r 281 (433)
.+++++||||++++.++.++..|... ...+..+||+++..+|
T Consensus 235 -----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 235 -----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp -----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred -----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 12366999999999999999998753 1248899999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----cc----CCCChhHHHhhcccCCCCC--CceeEEEEecccc
Q 013962 282 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD----LPKTVEDYVHRIGRTGRGG--SMGQATSFYTDRD 350 (433)
Q Consensus 282 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~d 350 (433)
..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.| ..|.|+++++..+
T Consensus 310 ~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 310 VLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999999999999999999998 65 5889999999999999988 4688999998877
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.8e-46 Score=372.73 Aligned_cols=323 Identities=21% Similarity=0.274 Sum_probs=244.2
Q ss_pred ccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 3 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 3 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
.+..+||.+|+|+|.++++.+.+++++++++|||||||+++.++++..+.. +.++++++|+++|+.|+++++
T Consensus 17 ~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEEEeCcHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999988664 678999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 162 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~ 162 (433)
+.+.. . ++.++..+|+...... ...+++|+|+||+++...+.+....+.++++||+||+|.+.++++...+..++
T Consensus 89 ~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll 163 (702)
T 2p6r_A 89 KKWEK-I-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILV 163 (702)
T ss_dssp TTTTT-T-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHH
T ss_pred HHHHh-c-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHH
Confidence 65433 2 6888999888654321 12468999999999998888765557889999999999998877777777666
Q ss_pred hhC---CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEE------EEcCchh---hHHHHHHHHHH
Q 013962 163 QNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL------EKVSENE---KVDRLLALLVE 230 (433)
Q Consensus 163 ~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~ 230 (433)
..+ .+..++++||||+++ .... ..++..+. +..... +. .+...+ ....... +.......+.+
T Consensus 164 ~~l~~~~~~~~ii~lSATl~n-~~~~-~~~l~~~~-~~~~~r--~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (702)
T 2p6r_A 164 TKMRRMNKALRVIGLSATAPN-VTEI-AEWLDADY-YVSDWR--PV-PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEE 237 (702)
T ss_dssp HHHHHHCTTCEEEEEECCCTT-HHHH-HHHTTCEE-EECCCC--SS-CEEEEEECSSEEEEEETTEEEEEECCHHHHHHH
T ss_pred HHHHhcCcCceEEEECCCcCC-HHHH-HHHhCCCc-ccCCCC--Cc-cceEEEeeCCeeeccCcchhhhhhhhHHHHHHH
Confidence 554 568899999999985 3333 34554322 111111 11 111110 0111000 00001122222
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC------------------------------CCceeeecCCCCHHH
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------------------GLHAVALHGGRNQSD 280 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~~~~~~~~ 280 (433)
.. .+++++||||++++.++.+++.|... +..+..+||+++..+
T Consensus 238 ~~-------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 310 (702)
T 2p6r_A 238 CV-------AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 310 (702)
T ss_dssp HH-------HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HH-------hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHH
Confidence 11 13466999999999999999988753 135788999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----cc---CCCChhHHHhhcccCCCCC--CceeEEEEeccccH
Q 013962 281 RESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LD---LPKTVEDYVHRIGRTGRGG--SMGQATSFYTDRDM 351 (433)
Q Consensus 281 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~d~ 351 (433)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.| ..|.|+++++..+.
T Consensus 311 R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 311 RRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 999999999999999999999999999999999998 55 6889999999999999988 46899999988773
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.8e-45 Score=376.79 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=252.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+|| +|+|+|.++++.+++++++++.+|||||||++++.+++..+.. +.++||++|+++|+.|+++.+..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHh
Confidence 3577 6999999999999999999999999999999887777776522 788999999999999999999996
Q ss_pred hccCCCceEEEEECCCCH---HHHHHHhhCC-CcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc----------
Q 013962 86 SRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD---------- 151 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~---------- 151 (433)
. ..++.+..++|+.+. ......+..+ ++|+|+||++|.+++.. ..+.++++||+||||++..
T Consensus 145 ~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 A--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp S--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred h--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 5 347899999999886 4445555554 99999999999877664 4567899999999987654
Q ss_pred -CCCHHH-HHHHHhhCC-----------CCCcEEEEEeec-chHHH-HHHHHhcCCCeEEEecCcCCCCCCceEEEEEcC
Q 013962 152 -MGFEPQ-IREVMQNLP-----------DKHQTLLFSATM-PVEIE-ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS 216 (433)
Q Consensus 152 -~~~~~~-~~~~~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (433)
.++... +..++..++ ...|++++|||+ +..+. ......+. +..........++.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 666666 778887766 788999999994 44333 22233322 22222333445566665554
Q ss_pred chhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee-eecCCCCHHHHHHHHHHHhcCCCcE
Q 013962 217 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNI 295 (433)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~v 295 (433)
.+...+...+... ++++||||+++..++.+++.|...++.+. .+|| +|.. ++.|++|+.+|
T Consensus 296 --~k~~~L~~ll~~~----------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINI 357 (1104)
T ss_dssp --CCHHHHHHHHHHH----------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSE
T ss_pred --CHHHHHHHHHHhc----------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCE
Confidence 3444444444331 15699999999999999999999999998 9998 2555 99999999999
Q ss_pred EEE----ecccccCcccCC-CcEEEEccCCC-------------------------------------------------
Q 013962 296 LVA----TDVASRGLDVMG-VAHVVNLDLPK------------------------------------------------- 321 (433)
Q Consensus 296 lv~----T~~~~~Gidip~-~~~Vi~~~~~~------------------------------------------------- 321 (433)
||| |+++++|+|+|+ +++||++|.|.
T Consensus 358 LVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~ 437 (1104)
T 4ddu_A 358 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEF 437 (1104)
T ss_dssp EEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred EEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 999 999999999999 99999999998
Q ss_pred -----------------------ChhHHHhhcccCCCCCCce--eEEEEeccccHHHHHHHHHHhh
Q 013962 322 -----------------------TVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 322 -----------------------s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
++..|+||+||+||.|..| .++.++...|...++.+++.+.
T Consensus 438 ~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 438 VEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999976543 3455555578888888887775
No 31
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=7.2e-44 Score=346.28 Aligned_cols=360 Identities=18% Similarity=0.215 Sum_probs=267.3
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|+ +|+++|..+++.+++|+ +..|+||+|||++|++|++...+. +..++|++||++|+.|.++++..++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 577 99999999999999887 999999999999999999876554 6789999999999999999999999
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEcccchhc-cC------
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DM------ 152 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~~~~~vIiDE~h~~~-~~------ 152 (433)
..+ +++++++.|+.+........ +++|+|+||+.| ++++..+. ..++.+.++|+||||+++ +.
T Consensus 177 ~~l-GLsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 177 RFL-GLQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHT-TCCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred hhc-CCeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 887 79999999998865544433 589999999999 88887653 456789999999999998 32
Q ss_pred ---------CCHHHHHHHHhhCC---------CCCcEE-----------------EEEeecchH---HHHH--HHHhcC-
Q 013962 153 ---------GFEPQIREVMQNLP---------DKHQTL-----------------LFSATMPVE---IEAL--AQEYLT- 191 (433)
Q Consensus 153 ---------~~~~~~~~~~~~~~---------~~~~~i-----------------~~SAT~~~~---~~~~--~~~~~~- 191 (433)
++...+..++..++ +..+++ ++|||.+.. +... +..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 25677888888887 566776 778886542 2211 111111
Q ss_pred CC-------eE---------------------------------------------------------------------
Q 013962 192 DP-------VQ--------------------------------------------------------------------- 195 (433)
Q Consensus 192 ~~-------~~--------------------------------------------------------------------- 195 (433)
+. ..
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 10 00
Q ss_pred -------EEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCc
Q 013962 196 -------VKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 268 (433)
Q Consensus 196 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 268 (433)
+.++...+........+.+....+|...+...+.+.. ..+.|+||||+|++.++.+++.|.+.|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-------~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-------AKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-------HTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-------hcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 0011100100111112345566677777776665432 23356999999999999999999999999
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC-------------------------------------
Q 013962 269 AVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV------------------------------------- 311 (433)
Q Consensus 269 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~------------------------------------- 311 (433)
+..+||.+...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999998888888888888877 599999999999999965
Q ss_pred ---------------cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccccccc
Q 013962 312 ---------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGNAVAF 372 (433)
Q Consensus 312 ---------------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~ 372 (433)
.+||+++.|.|...|.|++||+||+|.+|.+.+|++..|.... ..+...+.........+.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i 644 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPI 644 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCccc
Confidence 4999999999999999999999999999999999998886443 334333333222222334
Q ss_pred hhhhHHHHHHHHHHHHh
Q 013962 373 ATGKVARRKEREAAAAQ 389 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~~~ 389 (433)
......+..+.++...+
T Consensus 645 ~~~~~~~~ie~aQkkvE 661 (922)
T 1nkt_A 645 EAKMVTRAIKSAQTQVE 661 (922)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 44444455554444433
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.4e-44 Score=347.48 Aligned_cols=356 Identities=18% Similarity=0.215 Sum_probs=244.7
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
+|+|+|..+++.+++|+ +..|+||+|||++|++|++...+. +.+++|++||++|+.|.++.+..++..+
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~l- 142 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFL- 142 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 89999999999999987 999999999999999999876543 6789999999999999999999999886
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCCCccEEEEcccchhc-cCC---------
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG--------- 153 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~~~~~vIiDE~h~~~-~~~--------- 153 (433)
++++++++|+.+...... ..+++|+|+||+.| ++++..+. ..++++.++|+||||+++ +.+
T Consensus 143 gl~v~~i~GG~~~~~r~~--~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~ 220 (853)
T 2fsf_A 143 GLTVGINLPGMPAPAKRE--AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGP 220 (853)
T ss_dssp TCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC
T ss_pred CCeEEEEeCCCCHHHHHH--hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCC
Confidence 799999999988654333 33589999999999 78887653 456889999999999988 432
Q ss_pred ------CHHHHHHHHhhCCC--------------------CCcEE------------------------EEEeecchHHH
Q 013962 154 ------FEPQIREVMQNLPD--------------------KHQTL------------------------LFSATMPVEIE 183 (433)
Q Consensus 154 ------~~~~~~~~~~~~~~--------------------~~~~i------------------------~~SAT~~~~~~ 183 (433)
+...+..++..++. ..+++ ++|||.+....
T Consensus 221 ~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~ 300 (853)
T 2fsf_A 221 AEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMH 300 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHH
Confidence 34556666666653 33432 67887542111
Q ss_pred HH---H--HHhcC---------------------------------CC--------------------------------
Q 013962 184 AL---A--QEYLT---------------------------------DP-------------------------------- 193 (433)
Q Consensus 184 ~~---~--~~~~~---------------------------------~~-------------------------------- 193 (433)
.. + ..++. .+
T Consensus 301 ~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~ 380 (853)
T 2fsf_A 301 HVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLA 380 (853)
T ss_dssp --------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhh
Confidence 00 0 00000 00
Q ss_pred -------------------eEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEecccc
Q 013962 194 -------------------VQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 254 (433)
Q Consensus 194 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~ 254 (433)
..+.++...+........+.+....+|...+...+.... ..+.|+||||+|++.
T Consensus 381 GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-------~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 381 GMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-------AKGQPVLVGTISIEK 453 (853)
T ss_dssp EEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-------TTTCCEEEEESSHHH
T ss_pred cCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-------cCCCCEEEEECcHHH
Confidence 001111111111111122355666777777776665432 344679999999999
Q ss_pred HHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC-----------------------
Q 013962 255 CDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV----------------------- 311 (433)
Q Consensus 255 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~----------------------- 311 (433)
++.+++.|.+.|+++..+||.+...++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 454 se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~ 531 (853)
T 2fsf_A 454 SELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 531 (853)
T ss_dssp HHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHH
Confidence 9999999999999999999999888888888899888 599999999999999973
Q ss_pred --------------cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHH----HHHHHHHhhhhcccccccch
Q 013962 312 --------------AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLL----VAQIKKAIVDAESGNAVAFA 373 (433)
Q Consensus 312 --------------~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~~~~~ 373 (433)
.+||+++.|.|...|.|++||+||+|.+|.+.+|++..|... ..++...+.........+..
T Consensus 532 ~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~ 611 (853)
T 2fsf_A 532 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIE 611 (853)
T ss_dssp HHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCC
T ss_pred HhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccc
Confidence 599999999999999999999999999999999999887543 23443334333222233344
Q ss_pred hhhHHHHHHHHHHHH
Q 013962 374 TGKVARRKEREAAAA 388 (433)
Q Consensus 374 ~~~~~~~~~~~~~~~ 388 (433)
.....+..+.++...
T Consensus 612 ~~~~~~~i~~aq~~v 626 (853)
T 2fsf_A 612 HPWVTKAIANAQRKV 626 (853)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 445555555554443
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.1e-45 Score=372.71 Aligned_cols=341 Identities=19% Similarity=0.249 Sum_probs=202.3
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
..|+.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+.... .+.+.++||++|+++|+.||++++.++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999888765532 123678999999999999999999999
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC-CCCCccEEEEcccchhccCCC-HHHHHHHHh
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF-EPQIREVMQ 163 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~-~~~~~~~vIiDE~h~~~~~~~-~~~~~~~~~ 163 (433)
+... ++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+.+. ...+..++.
T Consensus 320 ~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8764 7889999999866554444555689999999999999887665 677899999999999887642 222223322
Q ss_pred h----CCCCCcEEEEEeecch-----------HHHHHHH------------------HhcCCCeEEEecCcCCCCCCc--
Q 013962 164 N----LPDKHQTLLFSATMPV-----------EIEALAQ------------------EYLTDPVQVKVGKVSSPTANV-- 208 (433)
Q Consensus 164 ~----~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-- 208 (433)
. ..+..+++++||||.. .+..... .++..+...............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456789999999952 1111111 111222211111000000000
Q ss_pred ----------------------eEEE-EEcCc---------------------hhh-----------HH-----------
Q 013962 209 ----------------------IQIL-EKVSE---------------------NEK-----------VD----------- 222 (433)
Q Consensus 209 ----------------------~~~~-~~~~~---------------------~~~-----------~~----------- 222 (433)
.... ..... ... ..
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00000 000 00
Q ss_pred -------HHHHHHHH----------------------------------------------HHHhhhhcCCCCCeEEEEE
Q 013962 223 -------RLLALLVE----------------------------------------------EAFLAEKSCHPFPLTIVFV 249 (433)
Q Consensus 223 -------~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~lvf~ 249 (433)
.....+.. ..........++.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 00000000 0000011124568899999
Q ss_pred eccccHHHHHHHHHHC------------CCceeeecCCCCHHHHHHHHHHHhc-CCCcEEEEecccccCcccCCCcEEEE
Q 013962 250 ERKTRCDEVSEALVAE------------GLHAVALHGGRNQSDRESALRDFRN-GSTNILVATDVASRGLDVMGVAHVVN 316 (433)
Q Consensus 250 ~~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidip~~~~Vi~ 316 (433)
+++..++.+++.|... |.....+||+|+..+|..+++.|++ |.++|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 4455667889999999999999999 99999999999999999999999999
Q ss_pred ccCCCChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 317 LDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 317 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
||+|+|+..|+||+|| ||. ..|.++++++..+..
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999 998 678999998776543
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7e-45 Score=366.95 Aligned_cols=327 Identities=20% Similarity=0.262 Sum_probs=221.7
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH-HHHHHHHhcc
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKALSRS 88 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~-~~~~~~~~~~ 88 (433)
-+|+|+|.++++.+++++++++.+|||+|||++|++|++..+..... .+.+.++||++|+++|+.|| ++++..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988766320 11137899999999999999 9999999864
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHH------HcCCCCCCCccEEEEcccchhccCC-CHHHHHHH
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL------QQGNTSLSRVSFVILDEADRMLDMG-FEPQIREV 161 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~------~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~~ 161 (433)
++.+..+.|+.........+..+.+|+|+||+.|.+.+ ......+.++++|||||||++.... +...+..+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 48889999887655444455567899999999999887 3444567789999999999986543 33333333
Q ss_pred HhhC-------------CCCCcEEEEEeecchH-----------HHHHHHHhcCCCeEEEecC-----cCCCCCCceEEE
Q 013962 162 MQNL-------------PDKHQTLLFSATMPVE-----------IEALAQEYLTDPVQVKVGK-----VSSPTANVIQIL 212 (433)
Q Consensus 162 ~~~~-------------~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 212 (433)
+... .+.+++++|||||... +......+-.......... .....+......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 2221 1567899999999862 1212121111000000000 000000000000
Q ss_pred EEcCch----h---------------------------------------------------------------------
Q 013962 213 EKVSEN----E--------------------------------------------------------------------- 219 (433)
Q Consensus 213 ~~~~~~----~--------------------------------------------------------------------- 219 (433)
...... .
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0
Q ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHhhhhcC
Q 013962 220 ------------------------------------------------------------KVDRLLALLVEEAFLAEKSC 239 (433)
Q Consensus 220 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 239 (433)
+...+...+... ...
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~-----~~~ 396 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ-----YTR 396 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-----Hhc
Confidence 000000000000 001
Q ss_pred CC-CCeEEEEEeccccHHHHHHHHHHC------CCceeeecCC--------CCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 013962 240 HP-FPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGG--------RNQSDRESALRDFRNGSTNILVATDVASR 304 (433)
Q Consensus 240 ~~-~~~~lvf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 304 (433)
.+ +.++||||+++..++.+++.|... ++.+..+||+ |+..+|..+++.|++|+++|||||+++++
T Consensus 397 ~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 397 TEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 12 578999999999999999999987 8999999999 99999999999999999999999999999
Q ss_pred CcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 305 GLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 305 Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
|+|+|++++||++|+|+|+..|+||+||+||.| +.++++..
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 999999999999999999999999999987764 34444443
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.4e-44 Score=366.09 Aligned_cols=321 Identities=20% Similarity=0.256 Sum_probs=242.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.++| .|+++|.++++.+++++++++.+|||+|||++|++++...+.. +.+++|++|+++|+.|+++++..+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4556 4899999999999999999999999999999998888776543 788999999999999999999986
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 165 (433)
+ .++.++.++|+.. ....++|+|+||+.|.+.+......+.++++|||||||++.++++...+..++..+
T Consensus 106 ~---~~~~v~~l~G~~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 106 F---DDVNIGLITGDVQ-------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML 175 (997)
T ss_dssp C-----CCEEEECSSCE-------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS
T ss_pred c---CCCeEEEEeCCCc-------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc
Confidence 5 3678888888864 23558999999999999988877777889999999999999999899999999999
Q ss_pred CCCCcEEEEEeecchHHH--HHHHHhcCCCeEEEecCcCCCCCCceEEEEE-------cCc-------------------
Q 013962 166 PDKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEK-------VSE------------------- 217 (433)
Q Consensus 166 ~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------------- 217 (433)
++..++|++|||+++... .++......+..+...... +..+.+.+.. +..
T Consensus 176 ~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 176 PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 999999999999976532 2222122223222221111 1111111110 000
Q ss_pred -------------------------------------------------------------------hhhHHHHHHHHHH
Q 013962 218 -------------------------------------------------------------------NEKVDRLLALLVE 230 (433)
Q Consensus 218 -------------------------------------------------------------------~~~~~~~~~~~~~ 230 (433)
......++..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 0001111111111
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCC---------------------------------------ceee
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------------------------------------HAVA 271 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~ 271 (433)
....++||||+++..|+.++..|...++ .+..
T Consensus 334 ---------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 404 (997)
T 4a4z_A 334 ---------RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAV 404 (997)
T ss_dssp ---------TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEE
T ss_pred ---------CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeee
Confidence 2345799999999999999999977554 4789
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCC---------ChhHHHhhcccCCCCC--Cce
Q 013962 272 LHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPK---------TVEDYVHRIGRTGRGG--SMG 340 (433)
Q Consensus 272 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g 340 (433)
+||+|++.+|..+++.|.+|.++|||||+++++|+|+|+ ..||+++.++ |+..|+|++||+||.| ..|
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G 483 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTG 483 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcce
Confidence 999999999999999999999999999999999999999 6666655555 9999999999999998 457
Q ss_pred eEEEEec--cccHHHHHHH
Q 013962 341 QATSFYT--DRDMLLVAQI 357 (433)
Q Consensus 341 ~~~~~~~--~~d~~~~~~~ 357 (433)
.+++++. ..+...++.+
T Consensus 484 ~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 484 TVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp EEEEECCSSCCCHHHHHHH
T ss_pred EEEEecCCCcchHHHHHHH
Confidence 7777773 2344444433
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-44 Score=357.23 Aligned_cols=321 Identities=21% Similarity=0.262 Sum_probs=239.6
Q ss_pred ccCCCCCCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
..++| .|+++|.++++.++++ .++++++|||||||++|+++++..+.. +.+++|++|+++|+.|+
T Consensus 363 ~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 363 KSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSILAIQH 433 (780)
T ss_dssp HHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHH
Confidence 46788 9999999999999864 589999999999999999999988765 78899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEECCCCHHHHHHH---h-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCC
Q 013962 79 EKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF 154 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~ 154 (433)
++.+.+++... ++.+..++|+......... + .+.++|+|+||+.|.+ ...+.++++||+||+|++....
T Consensus 434 ~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q- 506 (780)
T 1gm5_A 434 YRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ- 506 (780)
T ss_dssp HHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-
Confidence 99999998654 6889999999886654332 2 3469999999987754 3557889999999999974321
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHh
Q 013962 155 EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 234 (433)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
...+.......++++|||||.+...... +..+...............+.. .+........+...+.+..
T Consensus 507 ----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~---~~~~~~~~~~l~~~i~~~l-- 575 (780)
T 1gm5_A 507 ----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQT---MLVPMDRVNEVYEFVRQEV-- 575 (780)
T ss_dssp -----CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEE---CCCCSSTHHHHHHHHHHHT--
T ss_pred ----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEE---EEeccchHHHHHHHHHHHH--
Confidence 1122222346789999999977654432 2333222222221111122221 1222333444444443322
Q ss_pred hhhcCCCCCeEEEEEeccc--------cHHHHHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 013962 235 AEKSCHPFPLTIVFVERKT--------RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVAS 303 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~--------~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 303 (433)
..+.+++|||++++ .++.+++.|.. .+..+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 576 -----~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 576 -----MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp -----TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred -----hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 34466999999764 46778888887 467899999999999999999999999999999999999
Q ss_pred cCcccCCCcEEEEccCCC-ChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 304 RGLDVMGVAHVVNLDLPK-TVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 304 ~Gidip~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
+|+|+|++++||++++|. +...+.|++||+||.|..|.|++++.+.+....+.+
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 999999999999999985 788999999999999999999999985444443443
No 37
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.6e-44 Score=373.35 Aligned_cols=321 Identities=20% Similarity=0.281 Sum_probs=247.6
Q ss_pred ccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+||. | ++|.++++.+++++++++.+|||||||+ +.+|++..+... +.++||++|+++|+.|+++.+..
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHH
Confidence 358999 9 9999999999999999999999999998 788888877653 78899999999999999999999
Q ss_pred HhccCCCc----eEEEEECCCCHHHH---HHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHH
Q 013962 85 LSRSLDSF----KTAIVVGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
++... ++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++.+ +...
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHH
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cccc
Confidence 98765 56 88899999887653 333444 89999999999987665 56899999999999998 4667
Q ss_pred HHHHHhhC-----------CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHH
Q 013962 158 IREVMQNL-----------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 226 (433)
Q Consensus 158 ~~~~~~~~-----------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (433)
+..++..+ +...|++++|||++.. ......++.++..+..........++.+.+.. ..+...+..
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~---~~k~~~L~~ 269 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN---DESISTLSS 269 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---CCCTTTTHH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec---hhHHHHHHH
Confidence 77777666 3457899999999876 42222222222222222222233344444442 223233322
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEE----eccc
Q 013962 227 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVA----TDVA 302 (433)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~ 302 (433)
.+.. .+.++||||+++..++.+++.|... +++..+||++ ..+++.|++|+.+|||| |+++
T Consensus 270 ll~~----------~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 270 ILEK----------LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp HHTT----------SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred HHhh----------cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 2211 1356999999999999999999988 9999999998 37889999999999999 8999
Q ss_pred ccCcccCCC-cEEEEccCC-------------------------------------------------------------
Q 013962 303 SRGLDVMGV-AHVVNLDLP------------------------------------------------------------- 320 (433)
Q Consensus 303 ~~Gidip~~-~~Vi~~~~~------------------------------------------------------------- 320 (433)
++|+|+|+| ++||+++.|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CChhHHHhhcccCCCCCCce--eEEEEeccccHHHHHHHHHHhhh
Q 013962 321 ----------KTVEDYVHRIGRTGRGGSMG--QATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 321 ----------~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
.|...|+||+||+||.|..| .+++++...|...+..+++.+..
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987776 47888888888888888877764
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.1e-42 Score=356.57 Aligned_cols=312 Identities=18% Similarity=0.190 Sum_probs=242.8
Q ss_pred cCCCCCCcHHHHHHHHHhhc----CC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~----~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
.++|. +||+|.++++.+++ ++ ++++++|||+|||++++.+++..+.. +++++|++||++|+.|++
T Consensus 599 ~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 599 SFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp TCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEEECSSHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEEEechHHHHHHHH
Confidence 46774 79999999999986 55 89999999999999998888776543 779999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHH---h-hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 155 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~ 155 (433)
+.+.+++... ++.+..+.+.......... + .+..+|+|+||+.+. ....+.++++||+||+|++.
T Consensus 670 ~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g----- 738 (1151)
T 2eyq_A 670 DNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG----- 738 (1151)
T ss_dssp HHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC-----
T ss_pred HHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcC-----
Confidence 9999887654 5788888887665544332 2 346999999998663 34567889999999999953
Q ss_pred HHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhh
Q 013962 156 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 235 (433)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (433)
......+..++...++++|||||.+.........+.++..+ .........+...+..... ..+...+....
T Consensus 739 ~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~----~~i~~~il~~l--- 809 (1151)
T 2eyq_A 739 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDS----MVVREAILREI--- 809 (1151)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCH----HHHHHHHHHHH---
T ss_pred hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCH----HHHHHHHHHHH---
Confidence 33455556666778999999999877766555554433222 1111112223333332222 22222222222
Q ss_pred hhcCCCCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcE
Q 013962 236 EKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH 313 (433)
Q Consensus 236 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 313 (433)
..+++++|||++++.++.+++.|... +..+..+||+|+..+|..+++.|.+|+++|||||+++++|+|+|++++
T Consensus 810 ----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 810 ----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp ----TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred ----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 34577999999999999999999987 788999999999999999999999999999999999999999999999
Q ss_pred EEEccC-CCChhHHHhhcccCCCCCCceeEEEEecccc
Q 013962 314 VVNLDL-PKTVEDYVHRIGRTGRGGSMGQATSFYTDRD 350 (433)
Q Consensus 314 Vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d 350 (433)
||+++. +++..+|+|++||+||.|+.|.|++++.+.+
T Consensus 886 VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999988 5789999999999999999999999987653
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.5e-42 Score=370.04 Aligned_cols=344 Identities=14% Similarity=0.178 Sum_probs=251.4
Q ss_pred cccccCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~-~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++...+|..|+|+|.++++.++. +++++++||||||||++|.++++..+.+.. +.++++++|+++|+.|.++
T Consensus 917 e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raLa~q~~~ 990 (1724)
T 4f92_B 917 ESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEALAEQVYM 990 (1724)
T ss_dssp HTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHHHHHHHH
Confidence 456677899999999999999985 567999999999999999999999988753 6789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccCCCHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
++.+.+....+++++.++|+...... ...+++|+|+||+++..++.+.. ..+.++++||+||+|.+.+. .+..+
T Consensus 991 ~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~l 1066 (1724)
T 4f92_B 991 DWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVL 1066 (1724)
T ss_dssp HHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHH
T ss_pred HHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccH
Confidence 99887655447889999998654332 22447999999999976665432 23567999999999988764 55555
Q ss_pred HHHH-------hhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHH
Q 013962 159 REVM-------QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 231 (433)
Q Consensus 159 ~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
..++ ...+.+.|+|+||||+++. .....+.-..+...........+..+...+............ ....+.
T Consensus 1067 e~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~-~~~~~~ 1144 (1724)
T 4f92_B 1067 EVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL-LSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH-HTTHHH
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh-hhhcch
Confidence 4443 3456788999999999753 444444433332222222222222233333333222222222 111122
Q ss_pred HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC----------------------------------CCceeeecCCCC
Q 013962 232 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------GLHAVALHGGRN 277 (433)
Q Consensus 232 ~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~~~~ 277 (433)
.........+++++||||+++..|+.++..|... ...+..+|++|+
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 2222222355678999999999998887766321 134788999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----c------cCCCChhHHHhhcccCCCCCC--ceeEEEE
Q 013962 278 QSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----L------DLPKTVEDYVHRIGRTGRGGS--MGQATSF 345 (433)
Q Consensus 278 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~------~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~ 345 (433)
+.+|..+++.|++|.++|||||+++++|+|+|+..+||. | ..|.+..+|.||+|||||.|. .|.++++
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999999999999999999999999888883 2 235689999999999999987 6889999
Q ss_pred eccccHHHHHHH
Q 013962 346 YTDRDMLLVAQI 357 (433)
Q Consensus 346 ~~~~d~~~~~~~ 357 (433)
+...+....+.+
T Consensus 1305 ~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1305 CQGSKKDFFKKF 1316 (1724)
T ss_dssp EEGGGHHHHHHH
T ss_pred ecchHHHHHHHH
Confidence 988877665554
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-42 Score=370.38 Aligned_cols=342 Identities=19% Similarity=0.250 Sum_probs=248.4
Q ss_pred CCCCCCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC---CCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---GRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~---~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
.||++|+++|.++++.++ +++|++++||||||||++|.++++..+.+.... ...++.++|+++|+++|+.|.++.+
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 489999999999999887 567999999999999999999999998764322 1235789999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCC--CCCCccEEEEcccchhccCCCHHHHHH
Q 013962 83 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
.+.+... ++.+..++|+...... ...+++|+|||||++..++.+... .+.++++|||||+|.+.+ +.+..+..
T Consensus 155 ~~~~~~~-gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATY-GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHTTT-TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHhhC-CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 9888765 7899999998764321 124589999999998555544321 357799999999997765 46665554
Q ss_pred HHh-------hCCCCCcEEEEEeecchHHHHHHHHhcCC-Ce--EEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHH
Q 013962 161 VMQ-------NLPDKHQTLLFSATMPVEIEALAQEYLTD-PV--QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 230 (433)
Q Consensus 161 ~~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (433)
++. .+++..|+|+||||+++. ..... |+.. +. ........ .+..+.+.+........ ......+..
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~-wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~-~~~~~~~~~ 305 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT-FLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKA-IKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH-HTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHH-HhCCCCCCCeEEECCCC-ccCccEEEEeccCCcch-hhhhHHHHH
Confidence 443 346788999999999753 34443 4432 11 11222211 12223333322222221 111222222
Q ss_pred HHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-------------------------------------CCceeeec
Q 013962 231 EAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVALH 273 (433)
Q Consensus 231 ~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~ 273 (433)
...........++++||||+++..|+.+++.|... ...+..+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 22222233344567999999999999888887531 12478899
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE----ccC------CCChhHHHhhcccCCCCCC--cee
Q 013962 274 GGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN----LDL------PKTVEDYVHRIGRTGRGGS--MGQ 341 (433)
Q Consensus 274 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~------~~s~~~~~Q~~GR~~R~g~--~g~ 341 (433)
|+|+..+|..+.+.|++|.++|||||+++++|+|+|..++||. |++ |.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999999885 332 4589999999999999875 688
Q ss_pred EEEEeccccHHHHHHH
Q 013962 342 ATSFYTDRDMLLVAQI 357 (433)
Q Consensus 342 ~~~~~~~~d~~~~~~~ 357 (433)
++++....+......+
T Consensus 466 ~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 466 GILITSHGELQYYLSL 481 (1724)
T ss_dssp EEEEEESTTCCHHHHH
T ss_pred EEEEecchhHHHHHHH
Confidence 9998888776554443
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.8e-43 Score=339.99 Aligned_cols=317 Identities=15% Similarity=0.126 Sum_probs=230.7
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
..+|+|+|.++++.+++++++++++|||+|||++++.++...+... +.++||++|+++|+.||++++.++...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 3489999999999999999999999999999999988887766542 459999999999999999999887433
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 168 (433)
.+..+..+.++...... ...+.+|+|+||+.+... ....+.++++||+||||++.+ ..+..++..++..
T Consensus 184 -~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~ 252 (510)
T 2oca_A 184 -SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNC 252 (510)
T ss_dssp -CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTC
T ss_pred -CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccC
Confidence 35677777777654332 446789999999987543 223456799999999999865 4577777888778
Q ss_pred CcEEEEEeecchHHHHHH--HHhcCCCeEEEecCc------CCCCCCceEEEEEcCchh-------hHHHH---------
Q 013962 169 HQTLLFSATMPVEIEALA--QEYLTDPVQVKVGKV------SSPTANVIQILEKVSENE-------KVDRL--------- 224 (433)
Q Consensus 169 ~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~--------- 224 (433)
.++++|||||+....... ..++ .+........ ......+.......+... .....
T Consensus 253 ~~~l~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 253 MFKFGLSGSLRDGKANIMQYVGMF-GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CEEEEEESCGGGCSSCHHHHHHHH-CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred cEEEEEEeCCCCCcccHHHhHHhh-CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 899999999976532211 1122 2222111110 001111111222222110 11110
Q ss_pred -HHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-ccc
Q 013962 225 -LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVA 302 (433)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~ 302 (433)
...+.+..... ....+.+++||++ .+.++.+++.|...+..+..+||+++..+|..+++.|++|+.+||||| +++
T Consensus 332 ~~~~l~~~l~~~--~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~ 408 (510)
T 2oca_A 332 RNKWIAKLAIKL--AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF 408 (510)
T ss_dssp HHHHHHHHHHHH--HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH
T ss_pred HHHHHHHHHHHH--HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh
Confidence 01111111111 1123445666666 888999999999988899999999999999999999999999999999 999
Q ss_pred ccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 303 SRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 303 ~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
++|+|+|++++||++++|+++..|.|++||+||.|+.+.++++++
T Consensus 409 ~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 409 STGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999998775555554
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-42 Score=333.97 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
+|+|+|.++++.+++++++++++|||+|||++++.++... +.++||+||+++|+.||++++.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG-----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC-----
Confidence 7999999999999999999999999999999998887765 677999999999999999999983
Q ss_pred Cce-EEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCC
Q 013962 91 SFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 169 (433)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 169 (433)
++. +..+.|+.. ...+|+|+|++.+...+... ..++++||+||||++.+..+.. ++..++ ..
T Consensus 157 ~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-AP 219 (472)
T ss_dssp CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CS
T ss_pred CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC-CC
Confidence 567 888777764 34799999999997665421 2358999999999998876553 444454 67
Q ss_pred cEEEEEeecchH-------------------HHHHHHHhcCCCeEEEecCcCCC--------------------------
Q 013962 170 QTLLFSATMPVE-------------------IEALAQEYLTDPVQVKVGKVSSP-------------------------- 204 (433)
Q Consensus 170 ~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 204 (433)
+++++||||... .......++..+...........
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 899999999732 11111111111111000000000
Q ss_pred CCCceEEEE---------------------EcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHH
Q 013962 205 TANVIQILE---------------------KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 263 (433)
Q Consensus 205 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~ 263 (433)
.......+. ......+...+...+.. ..+.++||||++++.++.+++.|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---------~~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---------HRKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---------TSSSCBCCBCSCHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHhC
Confidence 000000000 00011122222222211 345679999999999999999883
Q ss_pred HCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCc-eeE
Q 013962 264 AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM-GQA 342 (433)
Q Consensus 264 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~-g~~ 342 (433)
+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++++|+|+..|.|++||+||.|+. +.+
T Consensus 371 -----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 371 -----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp -----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred -----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceE
Confidence 66899999999999999999999999999999999999999999999999999999999999999999875 455
Q ss_pred EEEe
Q 013962 343 TSFY 346 (433)
Q Consensus 343 ~~~~ 346 (433)
+++.
T Consensus 446 ~i~~ 449 (472)
T 2fwr_A 446 VLYE 449 (472)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2e-41 Score=321.81 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=210.3
Q ss_pred CCCCCcHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 8 EYTRPTSIQAQAMPVALSGRDL-LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~-l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
|+.+++|.|+ +++.+++++++ ++.+|||||||++|++|++..+... +.+++|++|+++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhc---
Confidence 6889999985 79999988776 9999999999999999998877663 7789999999999999998775
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHH-hhC
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM-QNL 165 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~-~~~ 165 (433)
++.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+...+..+. ...
T Consensus 70 ----g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 70 ----GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 138 (451)
T ss_dssp ----TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH
T ss_pred ----Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc
Confidence 2333322221110 12345679999999998777654 55788999999999976 221122221221 123
Q ss_pred CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeE
Q 013962 166 PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 245 (433)
Q Consensus 166 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (433)
++..++++||||++..... .+...+..+......+ .... . . +...+.+ ..+++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p-~~~~-------~--~----~~~~l~~----------~~~~~ 191 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIP-ERSW-------N--T----GFDWITD----------YQGKT 191 (451)
T ss_dssp TTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCC-SSCC-------S--S----SCHHHHH----------CCSCE
T ss_pred CCCceEEEEccCCCccchh---hhcCCCceEecCccCC-chhh-------H--H----HHHHHHh----------CCCCE
Confidence 4578999999999864322 1222232222221111 0000 0 0 0111111 13469
Q ss_pred EEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEcc-------
Q 013962 246 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLD------- 318 (433)
Q Consensus 246 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~------- 318 (433)
||||+++..++.+++.|...++.+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 99999999999999999999999999999654 57899999999999999999999999999 9999998
Q ss_pred -------------CCCChhHHHhhcccCCCCCC-ceeEEEEecc
Q 013962 319 -------------LPKTVEDYVHRIGRTGRGGS-MGQATSFYTD 348 (433)
Q Consensus 319 -------------~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 348 (433)
.|.|..+|+||+||+||.|. +|.+++++..
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888777643
No 44
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=4.3e-38 Score=299.34 Aligned_cols=366 Identities=17% Similarity=0.176 Sum_probs=264.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|++.|..+.-.+..|+ |..|.||+|||+++.+|++...+. |..+.|++|+..|+.|.++++..++..+
T Consensus 75 r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L- 143 (822)
T 3jux_A 75 RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL- 143 (822)
T ss_dssp CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh-
Confidence 46677777666666655 999999999999999999877776 7889999999999999999999999887
Q ss_pred CceEEEEECC--------------------------------------------------CCHHHHHHHhhCCCcEEEec
Q 013962 91 SFKTAIVVGG--------------------------------------------------TNIAEQRSELRGGVSIVVAT 120 (433)
Q Consensus 91 ~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ivv~T 120 (433)
+++++++... .+..+....+ .++|+++|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEcc
Confidence 7999998872 1222222232 37999999
Q ss_pred cHHH-HHHHHcCCC------CCCCccEEEEcccchhc-cC------------CCH---HHHHHHHhhCC-----------
Q 013962 121 PGRF-LDHLQQGNT------SLSRVSFVILDEADRML-DM------------GFE---PQIREVMQNLP----------- 166 (433)
Q Consensus 121 ~~~l-~~~~~~~~~------~~~~~~~vIiDE~h~~~-~~------------~~~---~~~~~~~~~~~----------- 166 (433)
...| +++++.+.. ..+.+.+.||||++.++ +. ... ..+..+...+.
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9988 778776532 24568999999999632 10 000 01111111110
Q ss_pred ---------------------------------------------C----------------------------------
Q 013962 167 ---------------------------------------------D---------------------------------- 167 (433)
Q Consensus 167 ---------------------------------------------~---------------------------------- 167 (433)
.
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0
Q ss_pred ---------------------------CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhh
Q 013962 168 ---------------------------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 220 (433)
Q Consensus 168 ---------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (433)
..++.+||||+.....++...|- ...+.++...+......+...+....++
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEECCCEEESSHHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeecCcEEEecHHHH
Confidence 24689999999988777766663 3344444443333333334566677788
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 013962 221 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300 (433)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 300 (433)
...+...+.+... .+.|+||||+|++.++.+++.|.+.++++..+||+....++..+.+.++.| .|+|||+
T Consensus 460 ~~al~~~I~~~~~-------~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 460 YEKIVEEIEKRYK-------KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHH-------HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred HHHHHHHHHHHhh-------CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 8888777766431 235699999999999999999999999999999987666666666777766 4999999
Q ss_pred ccccCcccC--------CCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHH----HHHHHHhhhhcccc
Q 013962 301 VASRGLDVM--------GVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLV----AQIKKAIVDAESGN 368 (433)
Q Consensus 301 ~~~~Gidip--------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~----~~~~~~~~~~~~~~ 368 (433)
++++|+|++ +..+||+++.|.|...|.|++||+||+|.+|.++++++..|.... +++...+.......
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~ 610 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEE 610 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCS
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCC
Confidence 999999998 566999999999999999999999999999999999999885432 34444443332223
Q ss_pred cccchhhhHHHHHHHHHHHHhcCCCCcccccc
Q 013962 369 AVAFATGKVARRKEREAAAAQKGATVATSKLS 400 (433)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (433)
..+.......+..+.++...+......+..+.
T Consensus 611 ~~~i~~~~v~~~ie~AQkkvE~~nf~~Rk~ll 642 (822)
T 3jux_A 611 GQPIQHPMLSKLIENIQKKVEGINFSIRKTLM 642 (822)
T ss_dssp SSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33555666677777777766654444443433
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.7e-41 Score=329.00 Aligned_cols=299 Identities=15% Similarity=0.182 Sum_probs=223.6
Q ss_pred CCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 9 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 9 ~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
...++|.|+.+++.+++++++++.+|||||||++|++|++..+... +.++||++||++|+.|+++.+..
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~PtreLa~Qi~~~l~~---- 237 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRVVAAEMEEALRG---- 237 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT----
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHHHHHHHHHHhcC----
Confidence 4678888888899999999999999999999999999999887763 67899999999999999987762
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC-C
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-D 167 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-~ 167 (433)
..+.. .+... . .....+..+.++|.+.+...+... ..+.++++||+||||++ +.++...+..+...++ +
T Consensus 238 ---~~v~~-~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~ 307 (618)
T 2whx_A 238 ---LPIRY-QTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 307 (618)
T ss_dssp ---SCEEE-CCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHT
T ss_pred ---CceeE-ecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhccc
Confidence 23332 11110 0 011234567788988887766554 45788999999999997 4445555666665554 5
Q ss_pred CCcEEEEEeecchHHHHHHHHhcC-CCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEE
Q 013962 168 KHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTI 246 (433)
Q Consensus 168 ~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (433)
..|+++||||++..... +.. ++..+...... +. .....+...+.+ ..+++|
T Consensus 308 ~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~~-------------~~-~~~~~ll~~l~~----------~~~~~L 359 (618)
T 2whx_A 308 EAAAIFMTATPPGSTDP----FPQSNSPIEDIEREI-------------PE-RSWNTGFDWITD----------YQGKTV 359 (618)
T ss_dssp SCEEEEECSSCTTCCCS----SCCCSSCEEEEECCC-------------CS-SCCSSSCHHHHH----------CCSCEE
T ss_pred CccEEEEECCCchhhhh----hhccCCceeeecccC-------------CH-HHHHHHHHHHHh----------CCCCEE
Confidence 78999999999866332 221 22222221111 00 000111111111 135699
Q ss_pred EEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEE------------
Q 013962 247 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHV------------ 314 (433)
Q Consensus 247 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V------------ 314 (433)
|||++++.++.+++.|...+.++..+|+. +|..+++.|++|+.+|||||+++++|+|+| +++|
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 99999999999999999999999999984 788899999999999999999999999998 8888
Q ss_pred --------EEccCCCChhHHHhhcccCCCCCC-ceeEEEEec---cccHHHHHHHHHHh
Q 013962 315 --------VNLDLPKTVEDYVHRIGRTGRGGS-MGQATSFYT---DRDMLLVAQIKKAI 361 (433)
Q Consensus 315 --------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~d~~~~~~~~~~~ 361 (433)
|+++.|.|..+|+||+||+||.|. .|.+++++. +.|...+..+++.+
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 667779999999999999999965 899999997 67766666666654
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.4e-41 Score=332.24 Aligned_cols=305 Identities=16% Similarity=0.240 Sum_probs=213.4
Q ss_pred ccccCCCC-----CCcHHHH-----HHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEE
Q 013962 3 DIEFHEYT-----RPTSIQA-----QAMPVAL------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 66 (433)
Q Consensus 3 ~~~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~l 66 (433)
++..+||. +|++.|+ ++++.++ +++++++.+|||||||++|+++++..+... +.+++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~l 274 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTA 274 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEE
Confidence 56667777 8999999 9999888 899999999999999999999999887653 77899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEccc
Q 013962 67 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 146 (433)
Q Consensus 67 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~ 146 (433)
|++||++|+.|+++.+..+ ++ ....+... .....+.-+-+.+...+.+.+... ..+.++++||+||+
T Consensus 275 ilaPTr~La~Q~~~~l~~~-----~i--~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEa 341 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGL-----PV--RYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEA 341 (673)
T ss_dssp EEESSHHHHHHHHHHTTTS-----CC--EECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEEST
T ss_pred EEccHHHHHHHHHHHHhcC-----Ce--eeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCC
Confidence 9999999999999888753 11 11111100 011122345556666665555543 56788999999999
Q ss_pred chhccCCCHHHHHHHHhhC-CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHH
Q 013962 147 DRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 225 (433)
Q Consensus 147 h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (433)
|++. ..+...+..+...+ +...++++||||++..+.. +.... ..+........... ...++
T Consensus 342 H~~~-~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~----~~~~~------------~~i~~v~~~~~~~~-~~~~l 403 (673)
T 2wv9_A 342 HFTD-PASIAARGYIATRVEAGEAAAIFMTATPPGTSDP----FPDTN------------SPVHDVSSEIPDRA-WSSGF 403 (673)
T ss_dssp TCCC-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS----SCCCS------------SCEEEEECCCCSSC-CSSCC
T ss_pred cccC-ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhh----hcccC------------CceEEEeeecCHHH-HHHHH
Confidence 9972 11112222222222 2578999999999855321 11110 01111110111111 11111
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q 013962 226 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRG 305 (433)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 305 (433)
..+. ..++++||||++++.++.+++.|...++.+..+|| ++|..+++.|++|+++|||||+++++|
T Consensus 404 ~~l~----------~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 404 EWIT----------DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMG 469 (673)
T ss_dssp HHHH----------SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTT
T ss_pred HHHH----------hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcc
Confidence 1111 12467999999999999999999999999999999 378999999999999999999999999
Q ss_pred cccCCCcEEEE--------------------ccCCCChhHHHhhcccCCCC-CCceeEEEEe---ccccHHHHHHHHHH
Q 013962 306 LDVMGVAHVVN--------------------LDLPKTVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKA 360 (433)
Q Consensus 306 idip~~~~Vi~--------------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~d~~~~~~~~~~ 360 (433)
+|+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++++ .+.|...+..++..
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 9999 999998 56889999999999999999 7889999996 46665555555443
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-40 Score=325.40 Aligned_cols=317 Identities=18% Similarity=0.180 Sum_probs=194.0
Q ss_pred CCCcHHHHHHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCCCCCceEEEEcCcHHHHHHHH-HH
Q 013962 10 TRPTSIQAQAMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIE-KE 81 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~-----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~~~~~~lvl~P~~~L~~q~~-~~ 81 (433)
..|+|+|.++++.+++ ++++++++|||+|||++++..+ ..+.... ......++++||++|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4799999999999875 3569999999999999875544 4444321 011114789999999999999999 66
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc----CCCCCCCccEEEEcccchhccCCCHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ----GNTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~----~~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
++.+. ..+..+.++ ....+.+|+|+||++|...... .......+++||+||||++.... ...
T Consensus 256 ~~~~~-----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 256 FTPFG-----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CTTTC-----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHhcc-----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 66542 223333322 2335689999999999876532 22345678999999999987642 245
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCc-----CCCCCCceEEEE-------------------
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV-----SSPTANVIQILE------------------- 213 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------------------- 213 (433)
+..++..++ ..++++|||||..........++..+........ ...+........
T Consensus 322 ~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 566777775 4679999999986544444444444322210000 000000000000
Q ss_pred -------EcCc-------hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCC--------ceee
Q 013962 214 -------KVSE-------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL--------HAVA 271 (433)
Q Consensus 214 -------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------~~~~ 271 (433)
.... ......+...+.+.. ....+.+++||||+++.+|+.+++.|...+. .+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l----~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFM----KRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHH----HHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHH----HhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000 001111112222111 1224567899999999999999999987543 2677
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCc---EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCC--ceeEEEEe
Q 013962 272 LHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGS--MGQATSFY 346 (433)
Q Consensus 272 ~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 346 (433)
+||.++ ++|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+|++||+||.++ .+..++++
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 888865 3799999999998766 88899999999999999999999999999999999999999875 34444444
Q ss_pred c
Q 013962 347 T 347 (433)
Q Consensus 347 ~ 347 (433)
.
T Consensus 556 D 556 (590)
T 3h1t_A 556 D 556 (590)
T ss_dssp E
T ss_pred e
Confidence 4
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.2e-40 Score=318.22 Aligned_cols=277 Identities=23% Similarity=0.263 Sum_probs=208.0
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 013962 12 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 91 (433)
Q Consensus 12 ~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 91 (433)
++++|.+++..+.+++++++.+|||||||+++.+++++. +.+++|++|+++|+.|+++.+.+.+ +
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~----g 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH----G 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH----S
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh----C
Confidence 445677777777788899999999999999888877653 6689999999999999999888776 3
Q ss_pred ceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc-
Q 013962 92 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ- 170 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~- 170 (433)
..+....|+.. ...+.+|+|+||++|+ ......+.++++||+||||.+ +.++...+..++..++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 44556666643 3467899999999984 455566788999999999854 44466677888888876665
Q ss_pred -EEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEE
Q 013962 171 -TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 249 (433)
Q Consensus 171 -~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~ 249 (433)
++++|||++..+. ...+.......... .. ......... ......+++||||
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~----i~~~~~~~~----------------l~~~~~~~vLVFv 403 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSNT--GE----IPFYGKAIP----------------IEAIRGGRHLIFC 403 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBSC--SS----EEETTEEEC----------------GGGSSSSEEEEEC
T ss_pred eEEEECCCCCcccc------cCCcceEEEeeccc--ch----hHHHHhhhh----------------hhhccCCcEEEEe
Confidence 6788999986311 11111111110000 00 011100000 0012456799999
Q ss_pred eccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEE----------Ecc-
Q 013962 250 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVV----------NLD- 318 (433)
Q Consensus 250 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----------~~~- 318 (433)
++++.++.+++.|++.++.+..+||++++.+ |.++..+|||||+++++|+|+| +++|| +||
T Consensus 404 ~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDy 475 (666)
T 3o8b_A 404 HSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSL 475 (666)
T ss_dssp SCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccc
Confidence 9999999999999999999999999999875 4566679999999999999997 99998 455
Q ss_pred ----------CCCChhHHHhhcccCCCCCCceeEEEEeccccHH
Q 013962 319 ----------LPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDML 352 (433)
Q Consensus 319 ----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~ 352 (433)
.|.+..+|+||+||+|| |.+|. +.++++.|..
T Consensus 476 dP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 476 DPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 78999999999999999 88899 8888876643
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-41 Score=320.13 Aligned_cols=287 Identities=17% Similarity=0.230 Sum_probs=189.3
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCC
Q 013962 22 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 101 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
.+++++++++++|||||||++|++|++..+... +.+++|++||++|+.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccc
Confidence 467889999999999999999999999877663 678999999999999999887743 232222111
Q ss_pred CHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC-CCCCcEEEEEeecch
Q 013962 102 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPV 180 (433)
Q Consensus 102 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT~~~ 180 (433)
.. ....+.-+-..+...+...+. ....+.++++||+||+|++ +.++...+..+.... +...++++||||+++
T Consensus 70 ~~-----v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 70 SA-----HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp CC-----CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ee-----ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 00 000111122223233322222 2345788999999999997 222222222222211 357899999999976
Q ss_pred HHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHH
Q 013962 181 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~ 260 (433)
...... ..+.. +......++... ...+...+.+ .++++||||++++.++.+++
T Consensus 143 ~~~~~~----~~~~~------------~~~~~~~~~~~~-~~~~~~~l~~----------~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 143 TSDEFP----HSNGE------------IEDVQTDIPSEP-WNTGHDWILA----------DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CCCSSC----CCSSC------------EEEEECCCCSSC-CSSSCHHHHH----------CCSCEEEECSCHHHHHHHHH
T ss_pred hhhhhh----hcCCC------------eeEeeeccChHH-HHHHHHHHHh----------cCCCEEEEeCCHHHHHHHHH
Confidence 533211 11100 011111111111 1111111111 13569999999999999999
Q ss_pred HHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE-------------------ccCCC
Q 013962 261 ALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN-------------------LDLPK 321 (433)
Q Consensus 261 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~-------------------~~~~~ 321 (433)
.|+..++.+..+|| ++|..+++.|++|+++|||||+++++|+|+| +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99999999999999 4688999999999999999999999999999 999986 88899
Q ss_pred ChhHHHhhcccCCCC-CCceeEEEEe---ccccHHHHHHHHHHh
Q 013962 322 TVEDYVHRIGRTGRG-GSMGQATSFY---TDRDMLLVAQIKKAI 361 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~d~~~~~~~~~~~ 361 (433)
+..+|+||+||+||. |.+|.|++++ ++.|...+..++..+
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999999998 6789999996 566666666666544
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.8e-39 Score=330.29 Aligned_cols=332 Identities=18% Similarity=0.169 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.+|+|||.+++..++.. .+++++++||+|||++++..+...+... ...++|||||+ +|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47999999999998864 4799999999999999877766655442 24589999999 99999999998776
Q ss_pred cCCCceEEEEECCCCHHHHHH--HhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhccCCCH--HHHHHHH
Q 013962 88 SLDSFKTAIVVGGTNIAEQRS--ELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFE--PQIREVM 162 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~~~~~--~~~~~~~ 162 (433)
++.+..+.++........ ......+|+|+|++.+...... ......++++||+||||++.+.... ..+..+.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 455555544332211111 1223579999999988542111 0112346899999999999865422 1222222
Q ss_pred hhCCCCCcEEEEEeecchH----HHHHHH----------------------------HhcCC------------------
Q 013962 163 QNLPDKHQTLLFSATMPVE----IEALAQ----------------------------EYLTD------------------ 192 (433)
Q Consensus 163 ~~~~~~~~~i~~SAT~~~~----~~~~~~----------------------------~~~~~------------------ 192 (433)
.......+++++||||..+ +..... .....
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 2223455799999999421 001000 00000
Q ss_pred ----------------------------------CeEEEecC---cCCCCCCceEEEEE---------------------
Q 013962 193 ----------------------------------PVQVKVGK---VSSPTANVIQILEK--------------------- 214 (433)
Q Consensus 193 ----------------------------------~~~~~~~~---~~~~~~~~~~~~~~--------------------- 214 (433)
...+.... ...+..........
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000 00000000011111
Q ss_pred ------------------------cCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHH-CCCce
Q 013962 215 ------------------------VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-EGLHA 269 (433)
Q Consensus 215 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~-~~~~~ 269 (433)
.....+...+...+.. .++.++||||+++..++.+++.|.. .++++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---------~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~ 531 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---------HRSQKVLVICAKAATALQLEQVLREREGIRA 531 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---------TSSSCCCEECSSTHHHHHHHHHHHTTTCCCE
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---------CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcE
Confidence 1111223333333322 3456799999999999999999995 59999
Q ss_pred eeecCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 270 VALHGGRNQSDRESALRDFRNGS--TNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.+.++++..
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999998777765
Q ss_pred cccHHHHHHHHHHh
Q 013962 348 DRDMLLVAQIKKAI 361 (433)
Q Consensus 348 ~~d~~~~~~~~~~~ 361 (433)
..+....+.+.+.+
T Consensus 612 ~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 612 YLEKTAQSVLVRWY 625 (968)
T ss_dssp EETTSHHHHHHHHH
T ss_pred cCCChHHHHHHHHH
Confidence 55444444444444
No 51
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.6e-38 Score=303.26 Aligned_cols=331 Identities=13% Similarity=0.141 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+|+|||.+++..+. .+.+++++++||+|||++++..+.. +.... ...++||||| .+|+.||.+++.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~-----~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKEN-----ELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTT-----CCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcC-----CCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 369999999998774 5678999999999999987654444 33321 2567999999 56899999999998
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 165 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 165 (433)
+. +..+..+.|+... ....+++|+|+|++.+..... .....+++||+||||++.+.. ......+..+
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l 175 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL 175 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh
Confidence 63 5667666666531 122457999999999864432 223458999999999998753 2344455555
Q ss_pred CCCCcEEEEEeecchHH-HH---H---------------------------------HHHhcCCCeEEEecCc----CCC
Q 013962 166 PDKHQTLLFSATMPVEI-EA---L---------------------------------AQEYLTDPVQVKVGKV----SSP 204 (433)
Q Consensus 166 ~~~~~~i~~SAT~~~~~-~~---~---------------------------------~~~~~~~~~~~~~~~~----~~~ 204 (433)
+ ..+.+++||||..+. .+ . +...+ .+..+..... ...
T Consensus 176 ~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 K-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp C-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred c-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 4 456899999995321 11 0 11111 1222111100 001
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHH--------------------------------------------------HHHh
Q 013962 205 TANVIQILEKVSENEKVDRLLALLVE--------------------------------------------------EAFL 234 (433)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~ 234 (433)
.+........+............+.+ ....
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 11222222222211111111000000 0000
Q ss_pred hhhcCCCCCeEEEEEeccccHHHHHHHHHHC-CCceeeecCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCcccCCC
Q 013962 235 AEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-STN-ILVATDVASRGLDVMGV 311 (433)
Q Consensus 235 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gidip~~ 311 (433)
.......+.++||||++...++.+.+.|... +..+..+||+++..+|..+++.|++| ..+ +|++|+++++|+|+|.+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 0011134567999999999999999999885 99999999999999999999999998 555 78899999999999999
Q ss_pred cEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 312 AHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 312 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
++||++++|||+..|.|++||++|.|+.+.+.++.........+.+.+.+.
T Consensus 414 ~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~ 464 (500)
T 1z63_A 414 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 464 (500)
T ss_dssp SEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHT
T ss_pred CEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999877765544333333344444433
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.7e-38 Score=315.44 Aligned_cols=320 Identities=18% Similarity=0.232 Sum_probs=228.1
Q ss_pred cCCCCCCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~-~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
..+ ..|++.|++++..++. ++++++.+|||+|||+ ++|++...... ..+.+..+++++|+++|+.|+++.+..
T Consensus 89 ~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 89 IRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp HHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred Hhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCceEEecCchHHHHHHHHHHHHH
Confidence 344 5788899999888775 5679999999999998 34444221110 011256799999999999999988876
Q ss_pred HhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccch-hccCC-CHHHHHHHH
Q 013962 85 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMG-FEPQIREVM 162 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~-~~~~~-~~~~~~~~~ 162 (433)
......+..++....... ....+.+|+++|++.+.+.+... ..+.++++||+||+|. ..+.. ....+..+.
T Consensus 163 ~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 163 EMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp HTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred HhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 653222233332211111 11245799999999998877654 4578899999999995 44422 223344444
Q ss_pred hhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCC
Q 013962 163 QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPF 242 (433)
Q Consensus 163 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (433)
... +..++++||||++.. .+..++.....+...... ..+...+...............+...... .+.
T Consensus 236 ~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~ 303 (773)
T 2xau_A 236 KRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHAT-----EEA 303 (773)
T ss_dssp HHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHH-----SCS
T ss_pred HhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHh-----cCC
Confidence 443 478999999999643 234455544444433221 22333333333334444444444332211 235
Q ss_pred CeEEEEEeccccHHHHHHHHHH-----------CCCceeeecCCCCHHHHHHHHHHHh-----cCCCcEEEEecccccCc
Q 013962 243 PLTIVFVERKTRCDEVSEALVA-----------EGLHAVALHGGRNQSDRESALRDFR-----NGSTNILVATDVASRGL 306 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vlv~T~~~~~Gi 306 (433)
+++||||+++.+++.+++.|.. .++.+..+||++++.+|..+++.|. +|..+|||||+++++|+
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~Gi 383 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSL 383 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCc
Confidence 6799999999999999999975 5778999999999999999999999 99999999999999999
Q ss_pred ccCCCcEEEEccC------------------CCChhHHHhhcccCCCCCCceeEEEEeccccH
Q 013962 307 DVMGVAHVVNLDL------------------PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDM 351 (433)
Q Consensus 307 dip~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~ 351 (433)
|+|++++||+++. |.|..+|+||+||+||. .+|.|+.++++.+.
T Consensus 384 dIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 384 TIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999887 88999999999999999 77999999987665
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.2e-39 Score=306.37 Aligned_cols=276 Identities=18% Similarity=0.257 Sum_probs=193.6
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEE
Q 013962 17 AQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 96 (433)
Q Consensus 17 ~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 96 (433)
......+.+++++++.+|||||||++|++|++..+... +.++||++|+++|+.|+++.+.. ..+..
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~ 77 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRG-------LPVRY 77 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTT-------SCEEE
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcC-------ceEeE
Confidence 33355566788999999999999999999999887753 77899999999999999988762 33322
Q ss_pred EECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchh-----ccCCCHHHHHHHHhhCCCCCcE
Q 013962 97 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-----LDMGFEPQIREVMQNLPDKHQT 171 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~ 171 (433)
..+.... ....+..+.++|.+.+...+... ..+.++++||+||||++ ...++ +.... ..+..|+
T Consensus 78 ~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~---~~~~~--~~~~~~~ 146 (459)
T 2z83_A 78 QTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGY---IATKV--ELGEAAA 146 (459)
T ss_dssp CC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHH---HHHHH--HTTSCEE
T ss_pred Eeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHH---HHHHh--ccCCccE
Confidence 2211110 11244567888988887766653 45788999999999973 22111 11111 1357899
Q ss_pred EEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEec
Q 013962 172 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 251 (433)
Q Consensus 172 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~ 251 (433)
++||||++..+...... ..|...... ..+. .........+.+ ..+++||||++
T Consensus 147 il~SAT~~~~~~~~~~~--~~pi~~~~~--------------~~~~-~~~~~~~~~l~~----------~~~~~LVF~~s 199 (459)
T 2z83_A 147 IFMTATPPGTTDPFPDS--NAPIHDLQD--------------EIPD-RAWSSGYEWITE----------YAGKTVWFVAS 199 (459)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCS-SCCSSCCHHHHH----------CCSCEEEECSC
T ss_pred EEEEcCCCcchhhhccC--CCCeEEecc--------------cCCc-chhHHHHHHHHh----------cCCCEEEEeCC
Confidence 99999998653211110 112211110 0000 000001111111 13569999999
Q ss_pred cccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEE---------------
Q 013962 252 KTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVN--------------- 316 (433)
Q Consensus 252 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------------- 316 (433)
+..++.+++.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 200 ~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 200 VKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSC
T ss_pred hHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccc
Confidence 999999999999999999999984 6778899999999999999999999999999 99999
Q ss_pred -----ccCCCChhHHHhhcccCCCCCC-ceeEEEEeccc
Q 013962 317 -----LDLPKTVEDYVHRIGRTGRGGS-MGQATSFYTDR 349 (433)
Q Consensus 317 -----~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~~ 349 (433)
++.|.|..+|+||+||+||.|. +|.+++++...
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6699999999999999999997 89999999875
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.8e-38 Score=299.49 Aligned_cols=268 Identities=18% Similarity=0.190 Sum_probs=187.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
++++++++|||||||++|+++++..+... +.+++|++||++|+.|+++.+. ++.+....++..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~--- 64 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQ--- 64 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcc---
Confidence 68899999999999999999999766653 7789999999999999887765 345555444321
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhh-CCCCCcEEEEEeecchHHHH
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIEA 184 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~~SAT~~~~~~~ 184 (433)
.....+..+.++|.+.+.+.+.. ...+.++++||+||+|++. ..+......+... .+...++++|||||++.+..
T Consensus 65 --~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 65 --SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred --ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 12223456778898888776666 4567889999999999973 2122222222222 24678999999999864221
Q ss_pred HHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHH
Q 013962 185 LAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 264 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~ 264 (433)
+... ...+.......+. .+...+...+.+ ..+++||||++++.++.+++.|..
T Consensus 141 ----~~~~------------~~~i~~~~~~~~~-~~~~~~~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~~ 193 (431)
T 2v6i_A 141 ----FPPS------------NSPIIDEETRIPD-KAWNSGYEWITE----------FDGRTVWFVHSIKQGAEIGTCLQK 193 (431)
T ss_dssp ----SCCC------------SSCCEEEECCCCS-SCCSSCCHHHHS----------CSSCEEEECSSHHHHHHHHHHHHH
T ss_pred ----hcCC------------CCceeeccccCCH-HHHHHHHHHHHc----------CCCCEEEEeCCHHHHHHHHHHHHH
Confidence 1100 0011111001111 111111111111 135699999999999999999999
Q ss_pred CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcE-----------------EEEccCCCChhHHH
Q 013962 265 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAH-----------------VVNLDLPKTVEDYV 327 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~-----------------Vi~~~~~~s~~~~~ 327 (433)
.+..+..+||+ +|..+++.|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+
T Consensus 194 ~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~ 268 (431)
T 2v6i_A 194 AGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAA 268 (431)
T ss_dssp TTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHH
T ss_pred cCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHH
Confidence 99999999996 577899999999999999999999999999 555 57788899999999
Q ss_pred hhcccCCCCCCceeEEEEe
Q 013962 328 HRIGRTGRGGSMGQATSFY 346 (433)
Q Consensus 328 Q~~GR~~R~g~~g~~~~~~ 346 (433)
||+||+||.|..+.+++++
T Consensus 269 Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 269 QRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp HHHTTSSCCTTCCCCEEEE
T ss_pred HhhhccCCCCCCCCeEEEE
Confidence 9999999998644444444
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-34 Score=285.64 Aligned_cols=330 Identities=15% Similarity=0.142 Sum_probs=217.2
Q ss_pred CCCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~---------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
..|+|||.+++..+. .+..+|++++||+|||++++..+...+.. .+..++...++|||||+ +|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~-~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ-SPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-CTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHh-CccccCCCCcEEEEecH-HHHHHHHH
Confidence 369999999999884 34569999999999999887666554433 22222235679999996 89999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHH---HHhh-----CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccC
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~ 152 (433)
++.+++.. .+.+..+.++....... .... ...+|+|+|++.+..... ......+++||+||||++.+.
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh
Confidence 99999864 35566666654332111 1111 247899999999975432 233356899999999999865
Q ss_pred CCHHHHHHHHhhCCCCCcEEEEEeecchHH----HH---------------HHHHhc-----------------------
Q 013962 153 GFEPQIREVMQNLPDKHQTLLFSATMPVEI----EA---------------LAQEYL----------------------- 190 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~----~~---------------~~~~~~----------------------- 190 (433)
. . .....+..++ ..+.+++||||..+. .. +...|.
T Consensus 208 ~-~-~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 208 D-N-QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp C-H-HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred h-h-HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 3 2 2333334444 456799999994321 00 000000
Q ss_pred ------CCCeEEEec-C-cCCCCCCceEEEEEcCchhhHHHHHH--------------------------HHHHHHH---
Q 013962 191 ------TDPVQVKVG-K-VSSPTANVIQILEKVSENEKVDRLLA--------------------------LLVEEAF--- 233 (433)
Q Consensus 191 ------~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~--- 233 (433)
..+..+.-. . .....+........+........+.. .+.+...
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 000000000 0 00001111111222111111000000 0000000
Q ss_pred -------------------------------------------hhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCcee
Q 013962 234 -------------------------------------------LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV 270 (433)
Q Consensus 234 -------------------------------------------~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 270 (433)
.......++.++|||++....++.+.+.|...++.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 0000002357899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCc---EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 271 ALHGGRNQSDRESALRDFRNGSTN---ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 271 ~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
.+||+++..+|..+++.|++|... +|++|.++++|+|++++++||++++|||+..+.|++||++|.|+...+.++..
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~l 524 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 524 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEE
Confidence 999999999999999999998654 88999999999999999999999999999999999999999999877666543
Q ss_pred c
Q 013962 348 D 348 (433)
Q Consensus 348 ~ 348 (433)
.
T Consensus 525 v 525 (644)
T 1z3i_X 525 L 525 (644)
T ss_dssp E
T ss_pred E
Confidence 3
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.5e-36 Score=294.62 Aligned_cols=285 Identities=20% Similarity=0.216 Sum_probs=206.1
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEE
Q 013962 19 AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV 98 (433)
Q Consensus 19 ~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 98 (433)
.....+++++++++||||||||+.+ +..+.. .+..+|++|+++|+.|+++.+... ++.+..++
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~llt 210 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTYHA----IQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVT 210 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHHH----HHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEEC
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEE
Confidence 3344567889999999999999833 333333 233599999999999999998875 67788888
Q ss_pred CCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC-CCCcEEEEEee
Q 013962 99 GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSAT 177 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~~SAT 177 (433)
|+..... .......+++++|++.+. ....+++|||||+|++.+.++...+..++..++ ...+++++|||
T Consensus 211 G~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 211 GEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp SSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 8865310 000012678888876542 235689999999999998889999998988887 67789999999
Q ss_pred cchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHH
Q 013962 178 MPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDE 257 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~ 257 (433)
.+ .+...... ......+....... . .. .....-... .. . .+..+|||+++.+++.
T Consensus 281 ~~-~i~~l~~~-~~~~~~v~~~~r~~---~-l~--~~~~~l~~l---------------~~-~-~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 281 ID-LVMELMYT-TGEEVEVRDYKRLT---P-IS--VLDHALESL---------------DN-L-RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp HH-HHHHHHHH-HTCCEEEEECCCSS---C-EE--ECSSCCCSG---------------GG-C-CTTEEEECSSHHHHHH
T ss_pred HH-HHHHHHHh-cCCceEEEEeeecc---h-HH--HHHHHHHHH---------------Hh-c-CCCCEEEEcCHHHHHH
Confidence 53 23333332 23333332211110 0 00 000000000 00 0 1225899999999999
Q ss_pred HHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCcccCCCcEEEEccC--------------CC
Q 013962 258 VSEALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILVATDVASRGLDVMGVAHVVNLDL--------------PK 321 (433)
Q Consensus 258 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~~--------------~~ 321 (433)
+++.|...++.+..+||+|++.+|..+++.|++ |.++|||||+++++|+|+ ++++||+++. |.
T Consensus 336 la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~ 414 (677)
T 3rc3_A 336 VSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPI 414 (677)
T ss_dssp HHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBC
T ss_pred HHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccC
Confidence 999999999999999999999999999999999 889999999999999999 8999999998 77
Q ss_pred ChhHHHhhcccCCCCCCc---eeEEEEeccccHHHHHHH
Q 013962 322 TVEDYVHRIGRTGRGGSM---GQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 322 s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~d~~~~~~~ 357 (433)
|..+|+||+||+||.|.. |.|+.++. .+...+..+
T Consensus 415 s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~ 452 (677)
T 3rc3_A 415 TTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEI 452 (677)
T ss_dssp CHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHH
T ss_pred CHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHH
Confidence 999999999999999864 55555543 343333333
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=300.88 Aligned_cols=325 Identities=15% Similarity=0.170 Sum_probs=222.5
Q ss_pred CCCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+|+|||.++++.+. .+.++|++.+||+|||++++..+...+.... ..+.+||||| .+|+.||.+++.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 479999999998776 7789999999999999987666655443322 2567899999 68899999999998
Q ss_pred hccCCCceEEEEECCCCHHHHHHH------------hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSE------------LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 153 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~ 153 (433)
+ +++.+..+.|+......... ....++|+|+|++.+...... .....+++||+||||++.+.
T Consensus 309 ~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~- 382 (800)
T 3mwy_W 309 A---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA- 382 (800)
T ss_dssp S---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS-
T ss_pred C---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc-
Confidence 6 46778777777654433221 224578999999999654322 11235889999999999764
Q ss_pred CHHHHHHHHhhCCCCCcEEEEEeecch----HHHHHHHHhcC-----------------------------CCeEEEecC
Q 013962 154 FEPQIREVMQNLPDKHQTLLFSATMPV----EIEALAQEYLT-----------------------------DPVQVKVGK 200 (433)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~ 200 (433)
.......+..++ ....+++||||.. .+...+..... .|..+....
T Consensus 383 -~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 383 -ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp -SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred -hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 334555555564 4457899999932 12222221111 111111000
Q ss_pred -c-CCCCCCceEEEEEcCchhhHHHHHH--------------------------HHHHH---------------------
Q 013962 201 -V-SSPTANVIQILEKVSENEKVDRLLA--------------------------LLVEE--------------------- 231 (433)
Q Consensus 201 -~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~--------------------- 231 (433)
. ....+........+........+.. .+.+.
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 0 0001111112222211111000000 00000
Q ss_pred ---------------------HHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhc
Q 013962 232 ---------------------AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 290 (433)
Q Consensus 232 ---------------------~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 290 (433)
..........+.++||||+....++.+.+.|...++.+..+||+++..+|..+++.|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 00000112345789999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEecc
Q 013962 291 GST---NILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTD 348 (433)
Q Consensus 291 g~~---~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 348 (433)
+.. .+|++|.++++|+|+|.+++||+++++||+..+.|++||++|.|+...+.++...
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 654 4899999999999999999999999999999999999999999998777665443
No 58
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-33 Score=274.18 Aligned_cols=362 Identities=18% Similarity=0.203 Sum_probs=269.5
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.|+ +|++.|..+++.+++|+ +..+.||+|||++|++|++...+. +..++|++||+.|+.|.++.+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 578 99999999999999988 999999999999999999766554 6789999999999999999999999
Q ss_pred ccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHH-HHHHHcCC------CCCC---CccEEEEcccchhc-cCCCH
Q 013962 87 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLS---RVSFVILDEADRML-DMGFE 155 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l-~~~~~~~~------~~~~---~~~~vIiDE~h~~~-~~~~~ 155 (433)
..+ ++++++++|+.+....... .+++|+|+||+.| ++++..+. ..++ ++.++|+||+|.++ +.+..
T Consensus 145 ~~l-GLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeart 221 (997)
T 2ipc_A 145 RGL-GLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEART 221 (997)
T ss_dssp HTT-TCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTS
T ss_pred Hhc-CCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCC
Confidence 876 7999999999886544443 3589999999999 88888763 3566 89999999999875 21110
Q ss_pred ---------------HHHHHHHhhCC---------------C--------------------------------------
Q 013962 156 ---------------PQIREVMQNLP---------------D-------------------------------------- 167 (433)
Q Consensus 156 ---------------~~~~~~~~~~~---------------~-------------------------------------- 167 (433)
..+..++..++ .
T Consensus 222 PLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~ 301 (997)
T 2ipc_A 222 PLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELA 301 (997)
T ss_dssp CEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHH
T ss_pred CeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHH
Confidence 11122221110 0
Q ss_pred ----------------------------------------------------------------------------CCcE
Q 013962 168 ----------------------------------------------------------------------------KHQT 171 (433)
Q Consensus 168 ----------------------------------------------------------------------------~~~~ 171 (433)
..++
T Consensus 302 ~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kL 381 (997)
T 2ipc_A 302 HMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKR 381 (997)
T ss_dssp HHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHh
Confidence 2367
Q ss_pred EEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEec
Q 013962 172 LLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER 251 (433)
Q Consensus 172 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~ 251 (433)
.+||+|......++...|-.+ .+.+++..+..........+....++..++...+.+.. ..+.|+||+|.|
T Consensus 382 sGMTGTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~-------~~GqPVLVgT~S 452 (997)
T 2ipc_A 382 AGMTGTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKY-------ERGQPVLVGTIS 452 (997)
T ss_dssp EEEESSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHH-------HHTCCEEEECSS
T ss_pred eecCCCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-------HCCCCEEEEeCC
Confidence 899999988777776666443 45566655555555566667777888888888777654 234669999999
Q ss_pred cccHHHHHHHHH--------------------------------------------------------------------
Q 013962 252 KTRCDEVSEALV-------------------------------------------------------------------- 263 (433)
Q Consensus 252 ~~~~~~l~~~L~-------------------------------------------------------------------- 263 (433)
++..+.+++.|.
T Consensus 453 Ie~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 532 (997)
T 2ipc_A 453 IEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKR 532 (997)
T ss_dssp HHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccch
Confidence 999999999998
Q ss_pred --------HCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCC-------------------c----
Q 013962 264 --------AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGV-------------------A---- 312 (433)
Q Consensus 264 --------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~-------------------~---- 312 (433)
+.+++..++++.....+...+-+.-+.|. |.|||+++++|.||.=- .
T Consensus 533 ~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~Ga--VTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~ 610 (997)
T 2ipc_A 533 AVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKT--VTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVE 610 (997)
T ss_dssp HHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTTC--EEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHH
T ss_pred hhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCCe--EEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccc
Confidence 56777888887655555544544444444 99999999999999421 1
Q ss_pred ---------------------------------------------------EEEEccCCCChhHHHhhcccCCCCCCcee
Q 013962 313 ---------------------------------------------------HVVNLDLPKTVEDYVHRIGRTGRGGSMGQ 341 (433)
Q Consensus 313 ---------------------------------------------------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 341 (433)
+||....+.|...-.|..||+||+|.+|.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGs 690 (997)
T 2ipc_A 611 LFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGG 690 (997)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCE
T ss_pred cccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCC
Confidence 89999999999999999999999999999
Q ss_pred EEEEeccccHHHH----HHHHHHhhhhcccccccchhhhHHHHHHHHHHHHhcCCC
Q 013962 342 ATSFYTDRDMLLV----AQIKKAIVDAESGNAVAFATGKVARRKEREAAAAQKGAT 393 (433)
Q Consensus 342 ~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (433)
+.+|++..|..+. .++...+.........+.......+..+.++...+....
T Consensus 691 SrF~LSLeDdLmr~fg~~~~~~~m~~l~~~~~~~Ie~~~v~~~ie~AQkkvE~~nf 746 (997)
T 2ipc_A 691 SRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNF 746 (997)
T ss_dssp EEEEEESSSHHHHHSSCTTHHHHHHHTCCCSSSCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHhhchHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHHHHHhH
Confidence 9999998876442 123333333222223445556666666766665554433
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.1e-35 Score=255.48 Aligned_cols=198 Identities=47% Similarity=0.796 Sum_probs=180.2
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|++|++..+..........++++||++|+++|+.|+++.
T Consensus 42 ~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 42 DVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp HHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998765444445688899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++||+||||++.++++...+..+
T Consensus 122 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i 200 (242)
T 3fe2_A 122 AAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200 (242)
T ss_dssp HHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHH
Confidence 99988765 68899999999988887777778999999999999999888888899999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecC
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 200 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 200 (433)
+..+++..|++++|||++..+...+..++.+|..+..+.
T Consensus 201 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 201 VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999999999999999999999999999999998887754
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.6e-34 Score=242.60 Aligned_cols=190 Identities=34% Similarity=0.625 Sum_probs=171.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ..+.+++|++|+++|+.|+++.
T Consensus 16 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~ 90 (206)
T 1vec_A 16 MGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVIVPTRELALQVSQI 90 (206)
T ss_dssp HHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEEeCcHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999886542 2367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+....++..+....|+............+++|+|+||+++.+.+......+.++++||+||||++.+.++...+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 170 (206)
T 1vec_A 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 170 (206)
T ss_dssp HHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHH
Confidence 99998776678899999999887777777788999999999999998887778889999999999999998899999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEE
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 196 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 196 (433)
+..+++..|++++|||++..+...+..++.+|..+
T Consensus 171 ~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 171 ILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99998899999999999999999999999888654
No 61
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4e-34 Score=291.42 Aligned_cols=320 Identities=13% Similarity=0.099 Sum_probs=210.9
Q ss_pred CCCcHHHHHHHHHhhc--------------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHH
Q 013962 10 TRPTSIQAQAMPVALS--------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 75 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~--------------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~ 75 (433)
..|||+|.+|++.++. +++++++++||||||+++ ++++..+... +...++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 367999999999999997 5555544321 1246899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCC--CCCCCccEEEEcccchhccC
Q 013962 76 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 152 (433)
Q Consensus 76 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~--~~~~~~~~vIiDE~h~~~~~ 152 (433)
.|+.+++..+... .+.++.+.......+. .+.+|+|+|+++|...+.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 9999999887532 1224444455555553 568999999999988766432 2345678999999999763
Q ss_pred CCHHHHHHHHhhCCCCCcEEEEEeecchHHH----HHHHHhcCCCe-----------------EEEecCcCCCCCCc--e
Q 013962 153 GFEPQIREVMQNLPDKHQTLLFSATMPVEIE----ALAQEYLTDPV-----------------QVKVGKVSSPTANV--I 209 (433)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~ 209 (433)
...+..+...++ +.++++|||||..... .....+++++. .+......+..... .
T Consensus 416 --~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 334566667776 5789999999974321 11222222222 11111000000000 0
Q ss_pred ---EE------EEEcCchhhHHHHHHHHHHHHHhhhhc---CCCCCeEEEEEeccccHHHHHHHHHHCC-----------
Q 013962 210 ---QI------LEKVSENEKVDRLLALLVEEAFLAEKS---CHPFPLTIVFVERKTRCDEVSEALVAEG----------- 266 (433)
Q Consensus 210 ---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lvf~~~~~~~~~l~~~L~~~~----------- 266 (433)
.. ...+........+...+.+........ ...+.++||||+++..|..+++.|.+.+
T Consensus 493 ~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 493 TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 00 000001112222233332222111110 1134579999999999999999997753
Q ss_pred -Cce-eeecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcE
Q 013962 267 -LHA-VALHGG----------R----------NQ-----------------------------SDRESALRDFRNGSTNI 295 (433)
Q Consensus 267 -~~~-~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~v 295 (433)
+++ ..+|+. + +. .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 444 445542 2 21 14778999999999999
Q ss_pred EEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCc----eeEEEEec
Q 013962 296 LVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSM----GQATSFYT 347 (433)
Q Consensus 296 lv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~ 347 (433)
||+|+++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.. |.++.+..
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 678889999999999999999998753 55665554
No 62
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.7e-33 Score=246.45 Aligned_cols=207 Identities=45% Similarity=0.749 Sum_probs=172.9
Q ss_pred CcccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC----CCCCCceEEEEcCcHHHHH
Q 013962 1 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----GRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~----~~~~~~~~lvl~P~~~L~~ 76 (433)
++++..+||.+|+++|.++++.+++++++++.+|||+|||++|++|++..+...... ....+.++||++|+++|+.
T Consensus 35 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 35 RNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp TTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 357788999999999999999999999999999999999999999999988754211 1123578999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHH
Q 013962 77 QIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 156 (433)
Q Consensus 77 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~ 156 (433)
|+++++..+.... ++.+..+.|+.........+..+++|+|+||++|.+.+......+.++++||+||||++.++++..
T Consensus 115 q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~ 193 (253)
T 1wrb_A 115 QILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEP 193 (253)
T ss_dssp HHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHH
T ss_pred HHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHH
Confidence 9999999987654 678888899988777777777889999999999999998887788899999999999999999999
Q ss_pred HHHHHHhhC--CC--CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCc
Q 013962 157 QIREVMQNL--PD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANV 208 (433)
Q Consensus 157 ~~~~~~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
.+..++..+ +. ..|++++|||++..+......++.+|..+..........++
T Consensus 194 ~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 194 QIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp HHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred HHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 999998853 43 67899999999999999999999999888776554443333
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=246.48 Aligned_cols=194 Identities=40% Similarity=0.622 Sum_probs=165.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCCCCCceEEEEcCcHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|++|++..+..... .....+.++||++|+++|+.|+++
T Consensus 33 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 33 KSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999988764311 112247889999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
++..+.. .++.+..+.|+.........+..+++|+|+||+++.+.+......+.++++||+||||++.++++...+..
T Consensus 113 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 190 (228)
T 3iuy_A 113 ECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 190 (228)
T ss_dssp HHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHH
T ss_pred HHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHH
Confidence 9999863 47888888998887777777778899999999999999888878889999999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEE
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 197 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 197 (433)
++..+++..|++++|||++..+...+..++.+|..+.
T Consensus 191 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 191 ILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp HHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred HHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999887664
No 64
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=244.69 Aligned_cols=191 Identities=40% Similarity=0.715 Sum_probs=171.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|++++
T Consensus 56 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~lil~Ptr~L~~q~~~~ 130 (249)
T 3ber_A 56 EACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFALVLTPTRELAFQISEQ 130 (249)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceEEEEeCCHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999887643 267899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+..+.... ++.+..+.|+.........+..+++|+|+||++|.+.+.. ....+.++++||+||||++.+.++...+..
T Consensus 131 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~ 209 (249)
T 3ber_A 131 FEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209 (249)
T ss_dssp HHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred HHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHH
Confidence 99987654 6888899999888777777778899999999999988876 445678899999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEe
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 198 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 198 (433)
++..++...+++++|||++..+...+..++.+|..+.+
T Consensus 210 i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 210 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999889999999999999999999999999987754
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.8e-34 Score=245.06 Aligned_cols=195 Identities=31% Similarity=0.549 Sum_probs=170.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|++++
T Consensus 17 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~ 91 (219)
T 1q0u_A 17 EAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAVITAPTRELATQIYHE 91 (219)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEEEEcCcHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999998875432 367899999999999999999
Q ss_pred HHHHhccCC---CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHH
Q 013962 82 VKALSRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 158 (433)
Q Consensus 82 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~ 158 (433)
+.++..... ++.+..+.|+.........+..+++|+|+||+++.+.+......+.++++||+||||++.++++...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l 171 (219)
T 1q0u_A 92 TLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDV 171 (219)
T ss_dssp HHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHH
T ss_pred HHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHH
Confidence 999886543 57788888887665544444567899999999999998887777888999999999999999999999
Q ss_pred HHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecCc
Q 013962 159 REVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV 201 (433)
Q Consensus 159 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 201 (433)
..++..++...|++++|||++..+...+..++.+|..+.....
T Consensus 172 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 172 DQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp HHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred HHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 9999999888999999999999999999999999988766543
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.9e-33 Score=243.60 Aligned_cols=191 Identities=30% Similarity=0.541 Sum_probs=168.7
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|++++
T Consensus 37 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~ 111 (230)
T 2oxc_A 37 EGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-----LSTQILILAPTREIAVQIHSV 111 (230)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----CCceEEEEeCCHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998875432 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC-CHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~ 160 (433)
+..+.....++.+..+.|+.........+ .+++|+|+||+++.+.+......+.++++||+||||++.+++ +...+..
T Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 190 (230)
T 2oxc_A 112 ITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINW 190 (230)
T ss_dssp HHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHH
Confidence 99998766678999999998876665544 468999999999999988777777889999999999999887 8999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEe
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 198 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 198 (433)
++..++...|++++|||++..+...+..++.+|..+..
T Consensus 191 i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 191 IYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred HHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999989999999999999999999999988876643
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=245.06 Aligned_cols=191 Identities=39% Similarity=0.603 Sum_probs=167.7
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.++.++++++++|||+|||++|++|++..+...... ...+.++||++|+++|+.|+++.
T Consensus 67 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~lil~Pt~~La~q~~~~ 145 (262)
T 3ly5_A 67 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVLILSPTRELAMQTFGV 145 (262)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEEEEeCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999988763211 12377899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC-CCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+++++... +..+..+.|+.........+..+++|+|+||+++.+.+.... ..+.++++||+||||++.++++...+..
T Consensus 146 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 224 (262)
T 3ly5_A 146 LKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 224 (262)
T ss_dssp HHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred HHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHH
Confidence 99998764 678888999998887777777779999999999998887653 5678899999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCe
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 194 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 194 (433)
++..++...|++++|||++..+......++..+.
T Consensus 225 i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 225 IIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999998886543
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=7.5e-33 Score=236.29 Aligned_cols=192 Identities=47% Similarity=0.728 Sum_probs=169.9
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+|+.+|+|+|.++++.+++++++++.+|||+|||++|+++++..+.... ....+.+++|++|+++|+.|++++
T Consensus 14 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~P~~~L~~q~~~~ 91 (207)
T 2gxq_A 14 EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLTPTRELALQVASE 91 (207)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEECCHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999998876421 123478899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..++. .+.+..+.|+.........+..+++|+|+||+.+.+.+......+.++++||+||||++.+.++...+..+
T Consensus 92 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 92 LTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp HHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 999864 46788888888877766666678999999999999998887778889999999999999998899999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEe
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 198 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 198 (433)
+..+++..|++++|||+++.+......++.+|..+..
T Consensus 169 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999889999999999999999999999999887654
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.6e-33 Score=242.84 Aligned_cols=191 Identities=38% Similarity=0.603 Sum_probs=159.1
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|+++.
T Consensus 43 ~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~ 117 (237)
T 3bor_A 43 RGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF-----KETQALVLAPTRELAQQIQKV 117 (237)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-----CCceEEEEECcHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999998875421 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCC-CcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+..+.... +..+..+.|+.........+..+ ++|+|+||+++.+.+......+.++++||+||||++.+.++...+..
T Consensus 118 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~ 196 (237)
T 3bor_A 118 ILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYE 196 (237)
T ss_dssp HHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHH
Confidence 99987654 57777788887665555444444 89999999999999988777788899999999999999989999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEe
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 198 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 198 (433)
++..++...|++++|||+++.+...+..++.+|..+.+
T Consensus 197 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 197 IFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999989999999999999999999999998877654
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.7e-33 Score=238.81 Aligned_cols=191 Identities=38% Similarity=0.617 Sum_probs=161.0
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|+++.
T Consensus 27 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~ 101 (224)
T 1qde_A 27 RGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----KAPQALMLAPTRELALQIQKV 101 (224)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----CCceEEEEECCHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998875432 367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREV 161 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~ 161 (433)
+..+.... ++.+..+.|+.........+. .++|+|+||+++.+.+......+.++++||+||||++.++++...+..+
T Consensus 102 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i 179 (224)
T 1qde_A 102 VMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 179 (224)
T ss_dssp HHHHTTTS-CCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHHhccc-CceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHH
Confidence 99987654 678888888876655444443 4899999999999998887778889999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEec
Q 013962 162 MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 199 (433)
Q Consensus 162 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
+..+++..|++++|||+++.+......++.+|..+.+.
T Consensus 180 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 180 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999899999999999999999999999998877554
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.1e-33 Score=238.25 Aligned_cols=191 Identities=32% Similarity=0.548 Sum_probs=166.7
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+++|.++++.+++++++++.+|||+|||++|+++++..+... ..+.++||++|+++|+.|++++
T Consensus 27 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~ 101 (220)
T 1t6n_A 27 RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVMCHTRELAFQISKE 101 (220)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEEEEeCCHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999876432 1256899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhh-CCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhcc-CCCHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIR 159 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~ 159 (433)
+.++....+++.+..+.|+.........+. ..++|+|+||+.+.+.+......+.++++||+||||++.+ .++...+.
T Consensus 102 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 181 (220)
T 1t6n_A 102 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 181 (220)
T ss_dssp HHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHH
T ss_pred HHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHH
Confidence 999987766789999999988766655554 4579999999999999888777788999999999999986 35777888
Q ss_pred HHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEE
Q 013962 160 EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 197 (433)
Q Consensus 160 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 197 (433)
.++..++...|++++|||++.........++.+|..+.
T Consensus 182 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 182 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 88888888899999999999999999999999887654
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=237.31 Aligned_cols=195 Identities=37% Similarity=0.627 Sum_probs=166.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||..|+++|.++++.+++++++++.+|||+|||++|++|++..+..... ....+.++||++|+++|+.|++++
T Consensus 38 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 38 KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999988765321 112377899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcC-CCCCCCccEEEEcccchhccCCCHHHHHH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFEPQIRE 160 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDE~h~~~~~~~~~~~~~ 160 (433)
+..+.... ++.+..+.|+.........+ .+++|+|+||+++.+.+... ...+.++++||+||||++.++++...+..
T Consensus 117 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 194 (236)
T 2pl3_A 117 LRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194 (236)
T ss_dssp HHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHH
T ss_pred HHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHH
Confidence 99987653 57888888887765554444 57899999999998887764 35678899999999999999999999999
Q ss_pred HHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEec
Q 013962 161 VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 199 (433)
Q Consensus 161 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
++..++...|++++|||++..+......++.+|..+.+.
T Consensus 195 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 195 VIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999899999999999999999999999999887654
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=246.84 Aligned_cols=190 Identities=31% Similarity=0.484 Sum_probs=165.6
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
++|..+||.+|+++|.++++.++++ +++++.+|||||||++|++|++..+.... .++++||++|+++|+.|++
T Consensus 105 ~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-----~~~~~lil~PtreLa~Q~~ 179 (300)
T 3fmo_B 105 QGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTG 179 (300)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-----CCceEEEEcCcHHHHHHHH
Confidence 4577899999999999999999987 89999999999999999999999875532 3668999999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHc-CCCCCCCccEEEEcccchhcc-CCCHHH
Q 013962 80 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLD-MGFEPQ 157 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDE~h~~~~-~~~~~~ 157 (433)
+.+..+.....++.+....|+...... ...+++|+|+||++|.+++.+ ....+.++++||+||||++.+ .++...
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~ 256 (300)
T 3fmo_B 180 KVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256 (300)
T ss_dssp HHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHH
T ss_pred HHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHH
Confidence 999999877667888888887653221 235678999999999999865 455678899999999999997 678888
Q ss_pred HHHHHhhCCCCCcEEEEEeecchHHHHHHHHhcCCCeEEEec
Q 013962 158 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 199 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
+..++..++...|++++|||++..+...+..++.+|..+.+.
T Consensus 257 ~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 257 SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999999999999999999999999999999999888764
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-31 Score=233.79 Aligned_cols=194 Identities=33% Similarity=0.546 Sum_probs=158.5
Q ss_pred cccccCCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013962 2 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 81 (433)
Q Consensus 2 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 81 (433)
+++..+||.+|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ...+.+++|++|+++|+.|++++
T Consensus 42 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 42 QNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRE 117 (245)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887542 12367899999999999999999
Q ss_pred HHHHhccCCCceEEEEECCCCHHHHH-HHhhCCCcEEEeccHHHHHHHHcC--CCCCCCccEEEEcccchhccC---CCH
Q 013962 82 VKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLDM---GFE 155 (433)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDE~h~~~~~---~~~ 155 (433)
+..++... ++.+..+.++....... .....+++|+|+||+++.+.+... ...+.++++||+||||++.++ ++.
T Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 196 (245)
T 3dkp_A 118 LIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFR 196 (245)
T ss_dssp HHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHH
T ss_pred HHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHH
Confidence 99987654 56666655543221111 112356899999999999988776 456788999999999999874 567
Q ss_pred HHHHHHHhhC-CCCCcEEEEEeecchHHHHHHHHhcCCCeEEEecC
Q 013962 156 PQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 200 (433)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 200 (433)
..+..++..+ +...|+++||||++..+..++..++.+|..+..+.
T Consensus 197 ~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 197 DQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 7777777665 45789999999999999999999999999887754
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=5e-29 Score=246.05 Aligned_cols=176 Identities=22% Similarity=0.229 Sum_probs=131.4
Q ss_pred CCcEEEEEeecchHHHHHHHHhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEE
Q 013962 168 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 247 (433)
Q Consensus 168 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 247 (433)
..|++++|||++...... . ...+............. +...+...+...+...+.... ..+.++||
T Consensus 380 ~~q~i~~SAT~~~~~~~~-----~-~~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~-------~~~~~vlV 444 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH-----S-GRVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERA-------ARGERTLV 444 (664)
T ss_dssp CSEEEEEESSCCHHHHHH-----C-SEEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHH-------HTTCEEEE
T ss_pred cCCEEEEecCCCHHHHHh-----h-hCeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHH-------hcCCEEEE
Confidence 568899999997543211 1 11111111111011111 111222344455555444332 12357999
Q ss_pred EEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC-----CCC
Q 013962 248 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL-----PKT 322 (433)
Q Consensus 248 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~-----~~s 322 (433)
||+++..++.+++.|...++++..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.|
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s 524 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRS 524 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGS
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 889
Q ss_pred hhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHH
Q 013962 323 VEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKK 359 (433)
Q Consensus 323 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~ 359 (433)
...|+||+||+||.+ .|.++++++..+......+.+
T Consensus 525 ~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 525 ERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999995 699999998877765555443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.4e-27 Score=235.54 Aligned_cols=117 Identities=22% Similarity=0.334 Sum_probs=108.3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccC-
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDL- 319 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~- 319 (433)
.+.++||||+++..++.+++.|...++++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHH
Q 013962 320 ----PKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIK 358 (433)
Q Consensus 320 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~ 358 (433)
|.|...|+||+||+||. ..|.+++++++.+......+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 89999999999999998 679999999887766555443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=7.2e-27 Score=190.36 Aligned_cols=150 Identities=37% Similarity=0.560 Sum_probs=136.6
Q ss_pred CCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHH
Q 013962 204 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 283 (433)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 283 (433)
...++.+.+..+....+...+...+... ...++||||+++..++.+++.|...++.+..+||+|++.+|..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 4556888888888888888777766542 2356999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 284 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++.+.|...+..+++.+.
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888877653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=197.17 Aligned_cols=166 Identities=38% Similarity=0.643 Sum_probs=130.2
Q ss_pred HhcCCCeEEEecCcCCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCC
Q 013962 188 EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 267 (433)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 267 (433)
.|+.+|..+.+........++.+.+..+....+...+...+.. .++++||||+++..++.+++.|...++
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~~~g~ 79 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK----------TPPPVLIFAEKKADVDAIHEYLLLKGV 79 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTT----------SCSCEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh----------CCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 4667777777776666778889999999888887776665532 124699999999999999999999999
Q ss_pred ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 268 HAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 268 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 80 ~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 80 EAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc-cHHHHHHHHHHhhh
Q 013962 348 DR-DMLLVAQIKKAIVD 363 (433)
Q Consensus 348 ~~-d~~~~~~~~~~~~~ 363 (433)
+. +......+++.+..
T Consensus 160 ~~~~~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 160 KACDESVLMDLKALLLE 176 (191)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 76 66777777766544
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=191.47 Aligned_cols=154 Identities=45% Similarity=0.724 Sum_probs=124.3
Q ss_pred CCCCCCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHH
Q 013962 202 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 281 (433)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 281 (433)
.....++.+.+..+....+...+...+... .++.++||||+++..++.+++.|...++.+..+||++++.+|
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--------~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC---------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 344667889999998888888777766542 245679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 282 ESALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 282 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++.+.|....+.+.+.+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l 165 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 165 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888887776
Q ss_pred hh
Q 013962 362 VD 363 (433)
Q Consensus 362 ~~ 363 (433)
..
T Consensus 166 ~~ 167 (185)
T 2jgn_A 166 VE 167 (185)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=4.7e-26 Score=186.03 Aligned_cols=147 Identities=32% Similarity=0.554 Sum_probs=125.6
Q ss_pred CceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHH
Q 013962 207 NVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285 (433)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 285 (433)
++.+.+..+...+ +...+...+.. .+.+++||||+++..++.+++.|...++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDS---------ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHH---------TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 4566677776666 76666655543 2346799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhh
Q 013962 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIV 362 (433)
Q Consensus 286 ~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~ 362 (433)
+.|++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++.+.+......+++.+.
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSS
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888876654
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3e-26 Score=188.05 Aligned_cols=148 Identities=32% Similarity=0.548 Sum_probs=131.3
Q ss_pred CCceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHH
Q 013962 206 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 285 (433)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 285 (433)
..+.+.+..+....+...+...+.. .+..++||||+++..++.+++.|...++.+..+||+|++.+|..++
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDV---------LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHH---------SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 4677888888888888777666643 2345799999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccc-cHHHHHHHHHHhh
Q 013962 286 RDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDR-DMLLVAQIKKAIV 362 (433)
Q Consensus 286 ~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-d~~~~~~~~~~~~ 362 (433)
+.|++|..+|||||+++++|+|+|++++||++++|+|+..|+||+||+||.|+.|.+++++.+. +...+..+++.+.
T Consensus 75 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 75 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999875 4566677766553
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.5e-26 Score=187.09 Aligned_cols=149 Identities=28% Similarity=0.460 Sum_probs=128.3
Q ss_pred CCCceEEEEEcCchh-hHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHH
Q 013962 205 TANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 283 (433)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 283 (433)
..++.+.+..++... +...+...+.. .+.+++||||+++..++.+++.|...++.+..+||++++.+|..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS---------ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT---------SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 456788888887655 65555444422 24568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCcccCCCcEEEEccCC------CChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHH
Q 013962 284 ALRDFRNGSTNILVATDVASRGLDVMGVAHVVNLDLP------KTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQI 357 (433)
Q Consensus 284 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~ 357 (433)
+++.|++|..+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++.+.+...+..+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 9999999999999999999999999999999999999 8999999999999999999999999999998888888
Q ss_pred HHHhh
Q 013962 358 KKAIV 362 (433)
Q Consensus 358 ~~~~~ 362 (433)
++.+.
T Consensus 156 ~~~~~ 160 (175)
T 2rb4_A 156 QDHFN 160 (175)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.5e-25 Score=190.50 Aligned_cols=146 Identities=36% Similarity=0.518 Sum_probs=129.0
Q ss_pred eEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHH
Q 013962 209 IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 288 (433)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 288 (433)
.+.....+...+...+...+.. .+++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f 77 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYV---------ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHH---------HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHH
T ss_pred eeeEEeCCHHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 3445556667777777666643 2235799999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 289 RNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 289 ~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
++|..+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|++|.+++++++.+...+..+++.+..
T Consensus 78 ~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 78 RQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp HSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred HCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888877654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-24 Score=192.97 Aligned_cols=147 Identities=34% Similarity=0.509 Sum_probs=128.1
Q ss_pred ceEEEEEcCchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHH
Q 013962 208 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 287 (433)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 287 (433)
+.+.+..+....+...+...+... .++++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~---------~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~ 73 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGA 73 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc---------CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 456777788888887777666442 14569999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHhhh
Q 013962 288 FRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVD 363 (433)
Q Consensus 288 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 363 (433)
|++|..+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.|++++++.+...+..+++.+..
T Consensus 74 f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 74 FRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp HHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred hhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888776543
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=192.40 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=118.6
Q ss_pred CCCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHH
Q 013962 7 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKAL 85 (433)
Q Consensus 7 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q-~~~~~~~~ 85 (433)
.....|+++|.++++.+++++++++.+|||+|||++++.+++..+..... ...+.++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999998877654311 1126789999999999999 88888888
Q ss_pred hccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCC------CCCCCccEEEEcccchhccCCCHHHH-
Q 013962 86 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN------TSLSRVSFVILDEADRMLDMGFEPQI- 158 (433)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~------~~~~~~~~vIiDE~h~~~~~~~~~~~- 158 (433)
... ++.+..+.|+............+++|+|+||+.|...+.... ..+.++++||+||||++.+.++...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 754 577777777754333222333458999999999988887643 45677899999999999866544433
Q ss_pred HHHHhhC-------------CCCCcEEEEEee
Q 013962 159 REVMQNL-------------PDKHQTLLFSAT 177 (433)
Q Consensus 159 ~~~~~~~-------------~~~~~~i~~SAT 177 (433)
..++... .+..++++||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2332211 156789999998
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=8.3e-25 Score=211.91 Aligned_cols=129 Identities=21% Similarity=0.228 Sum_probs=86.7
Q ss_pred ccCCCCCCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 5 EFHEYTRPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 5 ~~~~~~~~~~~Q~~~i~~~----~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
+-.|| .|||+|.+++..+ ..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+
T Consensus 2 ~~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 2 EVLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHH
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHH
Confidence 34577 8999999987544 578899999999999999999998765 7889999999999999998
Q ss_pred HHHHHhccCCCceEEEEECCCCH--------H------------------------HHH---------------HHhhCC
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNI--------A------------------------EQR---------------SELRGG 113 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--------~------------------------~~~---------------~~~~~~ 113 (433)
++..+ ++++..+.|.... . ..+ ......
T Consensus 70 ~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 70 NAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHGGG-----TCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 88774 2333333322110 0 000 011235
Q ss_pred CcEEEeccHHHHHHHHcCCC-------CCCCccEEEEcccchhc
Q 013962 114 VSIVVATPGRFLDHLQQGNT-------SLSRVSFVILDEADRML 150 (433)
Q Consensus 114 ~~Ivv~T~~~l~~~~~~~~~-------~~~~~~~vIiDE~h~~~ 150 (433)
++|+|+|+..|++....... .+.+..++||||||++.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 79999999999775443211 23557899999999873
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=1.2e-21 Score=190.45 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred CCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~----~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
++||+|.+++..+ ..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 7999999987754 478899999999999999999999984 7889999999999999999998875
Q ss_pred ccCCCceEEEEECCCC---------------------------------HHHHH------------------HHhhCCCc
Q 013962 87 RSLDSFKTAIVVGGTN---------------------------------IAEQR------------------SELRGGVS 115 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~~---------------------------------~~~~~------------------~~~~~~~~ 115 (433)
... ++++..+.|..+ ..... ......++
T Consensus 72 ~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 72 EKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 543 567776665221 11111 12234689
Q ss_pred EEEeccHHHHHHHHcCCCCC-CCccEEEEcccchhcc
Q 013962 116 IVVATPGRFLDHLQQGNTSL-SRVSFVILDEADRMLD 151 (433)
Q Consensus 116 Ivv~T~~~l~~~~~~~~~~~-~~~~~vIiDE~h~~~~ 151 (433)
|+|+|+..|++...+....+ ....+|||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999988765543332 4577899999998654
No 88
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=3.6e-26 Score=187.61 Aligned_cols=145 Identities=36% Similarity=0.602 Sum_probs=124.1
Q ss_pred ceEEEEEcCc-hhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHH
Q 013962 208 VIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALR 286 (433)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 286 (433)
+.+.+..++. ..+...+...+.. .++.++||||+++..++.+++.|...++.+..+||++++.+|..+++
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQ---------PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 3344444444 4455544444432 22356999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEeccccHHHHHHHHHHh
Q 013962 287 DFRNGSTNILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAI 361 (433)
Q Consensus 287 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~d~~~~~~~~~~~ 361 (433)
.|++|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++...|...+..+++.+
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999988887777776544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=7.3e-24 Score=189.09 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=121.9
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
+|+++|.++++.++++++.++++|||+|||++++.++...+... +.++||++|+++|+.||.+++.++... .
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~-~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLF-S 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSC-C
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhccc-c
Confidence 79999999999999888899999999999999988777655432 458999999999999999999998643 3
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 170 (433)
...+..+.++..... ....+.+|+|+||+.+.+.. ...+.++++||+||||++.+ ..+..++..+....+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 456666666654321 22256899999999875431 22356789999999999864 477788888877899
Q ss_pred EEEEEeecchHH
Q 013962 171 TLLFSATMPVEI 182 (433)
Q Consensus 171 ~i~~SAT~~~~~ 182 (433)
++++||||+...
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999997653
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=168.44 Aligned_cols=160 Identities=20% Similarity=0.229 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.++++|.++++.+.+++++++.||||||||.++..+++....... ...+.++++++|+++|+.|.++.+...+....
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 468999999999999999999999999999888888887766532 12245899999999999999999887664433
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchh-ccCCCH-HHHHHHHhhCCCC
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFE-PQIREVMQNLPDK 168 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~-~~~~~~-~~~~~~~~~~~~~ 168 (433)
+..++....... .....+++|+|+||+++.+.+.. .+.++++||+||+|.+ .+.++. ..+..++... ++
T Consensus 138 ~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 344443222211 00114578999999999998876 3788999999999985 454444 3556666655 47
Q ss_pred CcEEEEEeecchHH
Q 013962 169 HQTLLFSATMPVEI 182 (433)
Q Consensus 169 ~~~i~~SAT~~~~~ 182 (433)
.|++++|||++...
T Consensus 209 ~~~il~SAT~~~~~ 222 (235)
T 3llm_A 209 VRIVLMSATIDTSM 222 (235)
T ss_dssp SEEEEEECSSCCHH
T ss_pred CeEEEEecCCCHHH
Confidence 89999999999775
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.86 E-value=2e-21 Score=167.88 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..|+++|.+++..+++++++++++|||+|||++++.++... +.+++|++|+++|+.||.+++.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47999999999999998899999999999999987766543 567999999999999999999883
Q ss_pred CCce-EEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCC
Q 013962 90 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 168 (433)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 168 (433)
+.. +..+.|+.. ...+|+|+|++.+....... ...+++||+||+|++.+.. +..++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~ 218 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAES----YVQIAQMSI-A 218 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTT----HHHHHHTCC-C
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChH----HHHHHHhcc-C
Confidence 466 777777654 35799999999987655421 2458999999999997654 344555554 6
Q ss_pred CcEEEEEeecchH
Q 013962 169 HQTLLFSATMPVE 181 (433)
Q Consensus 169 ~~~i~~SAT~~~~ 181 (433)
.+++++||||+..
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 6789999999754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=3.7e-19 Score=174.18 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 11 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 11 ~~~~~Q~~~i~~~----~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
+|||.|.+.+..+ .+++++++.+|||+|||++|++|++..+... +.+++|++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 6899999998654 4789999999999999999999999987653 6789999999999999999998876
Q ss_pred ccCCCceEEEEEC
Q 013962 87 RSLDSFKTAIVVG 99 (433)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (433)
... .+++..+.|
T Consensus 76 ~~~-~~~~~~l~g 87 (620)
T 4a15_A 76 STM-KIRAIPMQG 87 (620)
T ss_dssp HHS-CCCEEECCC
T ss_pred hcc-CeEEEEEEC
Confidence 543 455555444
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.81 E-value=1e-19 Score=159.65 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=95.2
Q ss_pred CchhhHHHHHHHHHHHHHhhhhcCCCCCeEEEEEeccccHHHHHHHHHHC-CCceeeecCCCCHHHHHHHHHHHhcC-CC
Q 013962 216 SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-ST 293 (433)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~ 293 (433)
....|...+...+.+... .+.++||||++...++.+.+.|... ++.+..+||+++..+|..+++.|+++ .+
T Consensus 93 ~~s~K~~~L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 445677777766655431 3457999999999999999999885 99999999999999999999999998 77
Q ss_pred c-EEEEecccccCcccCCCcEEEEccCCCChhHHHhhcccCCCCCCceeEEEEec
Q 013962 294 N-ILVATDVASRGLDVMGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYT 347 (433)
Q Consensus 294 ~-vlv~T~~~~~Gidip~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 347 (433)
+ +|++|+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.+.++..
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~l 220 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKL 220 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEE
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEE
Confidence 7 78899999999999999999999999999999999999999999887655443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.91 E-value=4.2e-09 Score=103.14 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=87.4
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHH--HHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAA--FTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~--~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.+.|++|+..++.++.+++.|++|+|||.+ ++++.+..+.. ..+.++++++||..++.++.+.+......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 688999999999999999999999999954 33333333211 1266899999999999999888776554331
Q ss_pred CceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCc
Q 013962 91 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 170 (433)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 170 (433)
+..... ..... ....-..++-.+|... .+.........+++|||||++.+ + ...+..++..++...+
T Consensus 225 -l~~~~~-~~~~~-----~~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 225 -LTDEQK-KRIPE-----DASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp -CCSCCC-CSCSC-----CCBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCE
T ss_pred -CCHHHH-hccch-----hhhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCE
Confidence 110000 00000 0000011111222211 01111122236899999999954 3 4567888888988888
Q ss_pred EEEEEee
Q 013962 171 TLLFSAT 177 (433)
Q Consensus 171 ~i~~SAT 177 (433)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 8887655
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.72 E-value=4.1e-08 Score=97.30 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 10 TRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
..|.+.|.+|+..++..+ -.+|+||+|+|||.+....+.. +... +.++|+++||..-++++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999998655 4799999999999886554444 4442 778999999999999998888654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.67 E-value=1.4e-07 Score=91.34 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccC
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 89 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 89 (433)
..+++.|.+++..+..++.+++.|+.|+|||.++ ..++..+... +.++++++||...+.++.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL-------GLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc------
Confidence 3689999999999999889999999999999764 4444544442 7789999999988876654331
Q ss_pred CCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHH----HHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhC
Q 013962 90 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDH----LQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 165 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~----~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~ 165 (433)
.. ..|..+++.. +.........+++|||||++.+. ...+..++..+
T Consensus 254 --~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~ 303 (574)
T 3e1s_A 254 --RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAV 303 (574)
T ss_dssp --SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTS
T ss_pred --cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhC
Confidence 11 1111111100 11112223458899999999763 45677788888
Q ss_pred CCCCcEEEEEee
Q 013962 166 PDKHQTLLFSAT 177 (433)
Q Consensus 166 ~~~~~~i~~SAT 177 (433)
+...+++++.-+
T Consensus 304 ~~~~~lilvGD~ 315 (574)
T 3e1s_A 304 PPGARVLLVGDT 315 (574)
T ss_dssp CTTCEEEEEECT
T ss_pred cCCCEEEEEecc
Confidence 877777666443
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.64 E-value=2.3e-07 Score=87.99 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=81.4
Q ss_pred cCCCCCCcHHHHHHHHHhhcC----C-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013962 6 FHEYTRPTSIQAQAMPVALSG----R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 80 (433)
Q Consensus 6 ~~~~~~~~~~Q~~~i~~~~~~----~-~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 80 (433)
.+.|..|++-|++++..++.. + .++|.|+.|+|||.++ ..++..+.... ...+++++||...+..+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHh
Confidence 467889999999999987532 3 8999999999999754 55556655531 2479999999888776554
Q ss_pred HHHHHhccCCCceEEEEECCCCHHHHHHHh---hCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHH
Q 013962 81 EVKALSRSLDSFKTAIVVGGTNIAEQRSEL---RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 157 (433)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~ 157 (433)
.+. .....+. ...... ......+.. .....+..+++|||||+|.+. ...
T Consensus 93 ~~~--------~~~~T~h------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~ 144 (459)
T 3upu_A 93 LSG--------KEASTIH------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKL 144 (459)
T ss_dssp HHS--------SCEEEHH------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHH
T ss_pred hhc--------cchhhHH------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHH
Confidence 431 1111100 000000 000000000 112334568999999999753 445
Q ss_pred HHHHHhhCCCCCcEEEEEe
Q 013962 158 IREVMQNLPDKHQTLLFSA 176 (433)
Q Consensus 158 ~~~~~~~~~~~~~~i~~SA 176 (433)
+..++..++...+++++.-
T Consensus 145 ~~~l~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 145 FKILLSTIPPWCTIIGIGD 163 (459)
T ss_dssp HHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHhccCCCEEEEECC
Confidence 6666666765665555543
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.63 E-value=5.6e-06 Score=82.38 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
..+++.|.+++.. ....++|.|+.|||||.+.+.-+...+.... .+..++|++++|...+.++.+++....+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 5789999999983 3567999999999999887665555544321 1246799999999999999999988754
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.1e-07 Score=90.31 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
.+..+++.|.+|+..++.+.-++|.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34578999999999999877789999999999987544 33444332 1678999999999999999888764
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.59 E-value=9.2e-07 Score=87.09 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
....+++.|.+|+..++.+..++|.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+...
T Consensus 177 ~~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34578999999999999877899999999999987543 44444432 2678999999999999998887653
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.50 E-value=1.7e-06 Score=86.92 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCCCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 8 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
....+.+.|.+|+..++.+...+|.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3456899999999999887789999999999998754 444544432 2678999999999999988887653
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.06 E-value=2.3e-05 Score=68.89 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=76.1
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecccccCcc-----cCCCcEEE
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLD-----VMGVAHVV 315 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid-----ip~~~~Vi 315 (433)
.+.+++||++.....+.+.+.|...++.+..+.|.....+ .. -.++...+.+.|...+-|+| +..++.||
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 4578999999999999999999999999999999854432 21 12455566666777777786 67899999
Q ss_pred EccCCCChhHH-HhhcccCCCC--CCce--eEEEEeccccHH
Q 013962 316 NLDLPKTVEDY-VHRIGRTGRG--GSMG--QATSFYTDRDML 352 (433)
Q Consensus 316 ~~~~~~s~~~~-~Q~~GR~~R~--g~~g--~~~~~~~~~d~~ 352 (433)
.+|+.|++..- +|.+-|++|. |+.. .++-+++....+
T Consensus 199 ~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 199 CLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp ECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred EECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 99999999986 9999999997 3333 345555544443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.85 E-value=0.00027 Score=64.39 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+... .+..++++.|+...+..+.+.+..+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 78999999998876556689999999999987666555544432 267899999999999888888888776543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.71 E-value=0.00075 Score=65.94 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 90 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 90 (433)
.|+|+|...+..+-..+.+++..+-|+|||.+....++..+... .+..++++.|+...+....+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998875556799999999999987665555555443 266899999999999999988888876554
Q ss_pred C-ceEEEE-ECCCCHHHHHHHhhCCCcEEEec--cHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCC
Q 013962 91 S-FKTAIV-VGGTNIAEQRSELRGGVSIVVAT--PGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 166 (433)
Q Consensus 91 ~-~~~~~~-~~~~~~~~~~~~~~~~~~Ivv~T--~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~ 166 (433)
. +..... ...... ...++..|.+.+ |..+.. .+.+++|+||+|...+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~ 300 (592)
T 3cpe_A 237 DFLQPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVIS 300 (592)
T ss_dssp TTTSCCEEEECSSEE-----EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHS
T ss_pred HhhccccccCCccEE-----EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhc
Confidence 2 111111 011100 111334444332 333321 13679999999976542 233444433333
Q ss_pred C--CCcEEEEEeecch
Q 013962 167 D--KHQTLLFSATMPV 180 (433)
Q Consensus 167 ~--~~~~i~~SAT~~~ 180 (433)
. .. .+.+..||..
T Consensus 301 ~~~~~-~ii~isTP~~ 315 (592)
T 3cpe_A 301 SGRRS-KIIITTTPNG 315 (592)
T ss_dssp SSSCC-EEEEEECCCT
T ss_pred cCCCc-eEEEEeCCCC
Confidence 2 23 4455556654
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=0.00039 Score=56.55 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCCCCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 8 EYTRPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 8 ~~~~~~~~Q~~~i~~~~---------~~~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.|....+.|.+++..+. .++.+++.||+|+|||..+ ..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~ 63 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIY 63 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 34333567888887775 3577999999999999754 33444443
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.53 E-value=0.00033 Score=64.65 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS 108 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
.++.|+.|+|||..... .+ . ....++++||++++..|.+.+.... . .
T Consensus 164 ~~I~G~aGsGKTt~I~~-~~----~--------~~~~lVlTpT~~aa~~l~~kl~~~~-----~--------~------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS-RV----N--------FEEDLILVPGRQAAEMIRRRANASG-----I--------I------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHH-HC----C--------TTTCEEEESCHHHHHHHHHHHTTTS-----C--------C-------
T ss_pred EEEEcCCCCCHHHHHHH-Hh----c--------cCCeEEEeCCHHHHHHHHHHhhhcC-----c--------c-------
Confidence 78999999999975321 11 1 1346999999999998887764320 0 0
Q ss_pred HhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEee
Q 013962 109 ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 109 ~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
.....-+.|.++++-. .........++|||||+-.+ + ...+..++...+. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 1113347787776532 11112234889999999854 2 3344455555544 555655544
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00028 Score=57.51 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
+.-.++.+|+|+|||..++- ++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeecc
Confidence 45578999999999976544 33333332 67789998874
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.38 E-value=0.00027 Score=58.31 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=26.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
-.++.+++|+|||..++-.+... ... +.+++++.|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~-~~~-------g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRT-QFA-------KQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH-HHT-------TCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHC-------CCEEEEEEeccC
Confidence 35689999999997655444444 332 788999999764
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.30 E-value=0.00075 Score=67.25 Aligned_cols=71 Identities=21% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 11 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.+++-|.+++... +..++|.|+.|||||.+.+.-+...+..... ....+|+++.|+..+.++.+++....+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999863 5779999999999998876666655544211 246799999999999999999988754
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.25 E-value=0.0006 Score=55.73 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
++-.++.+|+|+|||..++ -++..+... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEecc
Confidence 3447889999999997654 444444432 78899999874
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.24 E-value=0.00031 Score=58.91 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+.-.++.+++|+|||..++. ++..+... +.+++++.|...-.. .......+ ++.
T Consensus 12 G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~r~-----~~~i~srl-G~~------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDTRS-----IRNIQSRT-GTS------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCGGG-----CSSCCCCC-CCS------------
T ss_pred cEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCchH-----HHHHHHhc-CCC------------
Confidence 34578899999999976544 44444432 778898887652100 00111111 100
Q ss_pred HHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhc
Q 013962 106 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 150 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~ 150 (433)
-..+-+.+.+.++..+..... -...++|||||++.+.
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGSC
T ss_pred -------ccccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccCc
Confidence 012335566667666654322 2458899999999753
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0025 Score=56.50 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
+.++++.||+|+|||.++ -.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 457999999999999765 455555544
No 113
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.16 E-value=0.00062 Score=56.75 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
+.-.++.+++|+|||..++-.+..+... +.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecCC
Confidence 4457889999999997655544444332 888999998754
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00028 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.6
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 013962 16 QAQAMPVALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 16 Q~~~i~~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
...++..+ .++.+++.+|+|+|||..+
T Consensus 27 ~~~~l~~~-~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 27 LVYVLRHK-HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp HHHHCCCC-CCSEEEEESSSTTTTCHHH
T ss_pred HHHHHHhc-CCCEEEEECCCCCCHHHHH
Confidence 33444444 5778999999999999743
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.04 E-value=0.0025 Score=57.15 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
+.+++.||+|+|||..+ ..+...+..
T Consensus 38 ~~lll~G~~GtGKT~la-~~i~~~~~~ 63 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL-QAAGNEAKK 63 (324)
T ss_dssp SSEEEECSSSSSHHHHH-HHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 57999999999999754 444444443
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.99 E-value=0.00096 Score=54.92 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
|.-.++.+++|+|||...+- .+..+... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr-~~~r~~~~-------g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIR-RLRRGIYA-------KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCceEEEEeccC
Confidence 34478899999999965444 44444432 677999999754
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.98 E-value=0.0021 Score=64.52 Aligned_cols=72 Identities=22% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
..|++.|.+|+... ...++|.|+.|||||.+.+.-+...+.... .....+|+++.|+..+.++.+++....+
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 57999999999863 468999999999999887666655554321 1246799999999999999999888753
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.94 E-value=0.0017 Score=52.67 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCc
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 71 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~ 71 (433)
++-.++.+|+|+|||.-. +-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEccc
Confidence 445789999999999544 4444444432 6789999887
No 119
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.94 E-value=0.0027 Score=61.79 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcc
Q 013962 11 RPTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 88 (433)
Q Consensus 11 ~~~~~Q~~~i~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 88 (433)
.+|.-|.+++..+.. ....++.|+-|.|||.+ +-.++..+. ..++|.+|+..-+.... .+...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~-lG~~~a~~~----------~~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL-AGQLISRIA----------GRAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH-HHHHHHHSS----------SCEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH-HHHHHHHHH----------hCcEEECCCHHHHHHHH----HHhhC
Confidence 678899999998886 34579999999999954 344444432 23699999987665332 22211
Q ss_pred CCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCCCHHHHHHHHhhCCCC
Q 013962 89 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~ 168 (433)
.|-+..|+.+.. .....++||||||=.+. .+.+..++...+
T Consensus 240 --------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~~-- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRFP-- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTSS--
T ss_pred --------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhCC--
Confidence 133446665432 12348899999999773 566777766333
Q ss_pred CcEEEEEeec
Q 013962 169 HQTLLFSATM 178 (433)
Q Consensus 169 ~~~i~~SAT~ 178 (433)
.++||.|.
T Consensus 281 --~v~~~tTv 288 (671)
T 2zpa_A 281 --RTLLTTTV 288 (671)
T ss_dssp --EEEEEEEB
T ss_pred --eEEEEecC
Confidence 57888887
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.93 E-value=0.0034 Score=56.52 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 12 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 12 ~~~~Q~~~i~~~~----~~~---~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
++|+|.+++..+. +++ .+++.||.|+|||.++. .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 5789999887665 333 38999999999997654 4444444
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.89 E-value=0.02 Score=49.73 Aligned_cols=18 Identities=33% Similarity=0.180 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||.++-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 369999999999998653
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.89 E-value=0.0083 Score=50.16 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=25.2
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEee
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
....+||+||+|.+... ....+..++...+....+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 44678999999987543 234455555655555555555433
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.81 E-value=0.0082 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..+++.||+|+|||..+ ..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 67999999999999754 34444443
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.79 E-value=0.011 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
..++++.||+|+|||..+ ..+...+
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999754 3344444
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.76 E-value=0.0025 Score=67.84 Aligned_cols=73 Identities=29% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 10 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 10 ~~~~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
.++++-|.+++..- +++++|.|..|||||.+.+.-++..+..... .-+..+++++++|++.+.++.+++....
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999865 6799999999999999877777766655210 1125689999999999999999888754
No 126
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.66 E-value=0.046 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..+++.||+|+|||..+ ..+...+.
T Consensus 44 ~~~ll~G~~G~GKT~l~-~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV-EGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999754 34444443
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.61 E-value=0.0048 Score=55.33 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....+||+||+|.+........+..++...+...++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3578999999998862223344555555544455555533
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.60 E-value=0.012 Score=55.16 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=24.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
+.+++.||+|+|||..+ ..+...+.... .+..++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~~~~-----~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHHHHC-----CSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEeeH
Confidence 57999999999999754 44444443321 1444555544
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.01 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.++++.||+|+|||..+ ..+...+
T Consensus 44 ~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999754 3344443
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.56 E-value=0.019 Score=53.14 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCccEEEEcccchhc---cCCCHHHHHHHHhhCCCCCcEEEEEeecchHHHHHHHHh
Q 013962 136 SRVSFVILDEADRML---DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 189 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 189 (433)
.++++||+|++-++. +......+..+.....+...++.++|+........+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 468899999998654 222344556666666666667788888765555555444
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.53 E-value=0.007 Score=51.43 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
+..+++.||+|+|||..+ ..+...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la-~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI-HAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 567999999999999754 33444433
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.34 E-value=0.0028 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
+.++++.||+|+|||..+. .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999997653 4444444
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.016 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+++.||+|+|||..+ ..+...+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999764 4444444
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.017 Score=51.58 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=24.6
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEe
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 176 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 176 (433)
....+||+||+|.+... ....+..++...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999987543 23345555555555555555443
No 135
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.024 Score=50.13 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 135 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
..+.+++||||+|.+.... ...+.+.++.-++...+|+.|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568899999999886432 233445555444444445444
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.03 E-value=0.0067 Score=55.86 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+++.||+|+|||..+ ..+...+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6999999999999754 3344443
No 137
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.99 E-value=0.029 Score=49.08 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
.+.+++.||+|+|||..+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999754
No 138
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.96 E-value=0.051 Score=48.51 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+++.||+|+|||..+-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998653
No 139
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.94 E-value=0.014 Score=47.34 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHHhccCCCceEEEEECCCC--
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTN-- 102 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-- 102 (433)
...+++..++|.|||.+++..++..+-. |.+|+|+.-.+. ....-.+.+..+ ++.......+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPH-----GVEFQVMATGFTWE 94 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGG-----TCEEEECCTTCCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhC-----CcEEEEcccccccC
Confidence 3579999999999999887777776655 888998843321 000000112222 122111111100
Q ss_pred ---HHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccchhccCC--CHHHHHHHHhhCCCCCcEEEEEee
Q 013962 103 ---IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 103 ---~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
....... ...-+...... ..-..+++||+||.-.....+ -...+..++...+....+|+.+--
T Consensus 95 ~~~~~~~~~~-----------a~~~l~~a~~~-l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 95 TQNREADTAA-----------CMAVWQHGKRM-LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp GGGHHHHHHH-----------HHHHHHHHHHH-TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred CCCcHHHHHH-----------HHHHHHHHHHH-HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 0000000 01112222221 222568999999998655444 344566677766655555555445
Q ss_pred cchHHHHH
Q 013962 178 MPVEIEAL 185 (433)
Q Consensus 178 ~~~~~~~~ 185 (433)
+|+.+.+.
T Consensus 163 ap~~l~e~ 170 (196)
T 1g5t_A 163 CHRDILDL 170 (196)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHh
Confidence 55554443
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.041 Score=49.74 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEee
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
....+|++||+|.+... ....+..++...+....+++.+..
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCc
Confidence 34679999999987543 234455566665555556655433
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.036 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+..+++.||+|+|||..+ ..+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999754 3344444
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.76 E-value=0.11 Score=48.10 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=65.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 105 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
.+++.+++|+|||.++. .+..++... +.+++++. |.+.-+ .+.+..+.... ++.+.....+.+
T Consensus 102 vIlivG~~G~GKTTt~~-kLA~~l~~~-------G~kVllv~~D~~R~aa---~eqL~~~~~~~-gvpv~~~~~~~d--- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVA-KLARYFQKR-------GYKVGVVCSDTWRPGA---YHQLRQLLDRY-HIEVFGNPQEKD--- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHHTT-------TCCEEEEECCCSSTHH---HHHHHHHHGGG-TCEEECCTTCCC---
T ss_pred EEEEECcCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeCCCcchhH---HHHHHHHHHhc-CCcEEecCCCCC---
Confidence 47889999999997654 344444332 66666665 333332 23344443322 333221111111
Q ss_pred HHHHhhCCCcEEEeccHHHH-HHHHcCCCCCCCccEEEEcccchhccC-CCHHHHHHHHhhCCCCCcEEEEEeecchHHH
Q 013962 106 QRSELRGGVSIVVATPGRFL-DHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIE 183 (433)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~-~~~~~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 183 (433)
|..+. +.+.. .....+++||||.+=++... .....+..+.....+...++.+.||......
T Consensus 167 ---------------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 167 ---------------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ---------------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred ---------------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 21111 11111 00124789999998654321 1223344444555555567778888765555
Q ss_pred HHHHHh
Q 013962 184 ALAQEY 189 (433)
Q Consensus 184 ~~~~~~ 189 (433)
..+..+
T Consensus 230 ~~a~~f 235 (443)
T 3dm5_A 230 NQALAF 235 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 143
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.73 E-value=0.018 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.++++.||+|+|||.++ ..+...+.
T Consensus 68 ~~vll~G~~GtGKT~la-~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA-LKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 46999999999999765 33444443
No 144
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.12 Score=47.16 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+|+.||+|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 3679999999999998653
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.62 E-value=0.095 Score=44.99 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+++.||+|+|||..+-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.60 E-value=0.08 Score=49.76 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=31.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 82 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 82 (433)
..|.-++|.|++|+|||..++..+....... +..++++...-. ..|+..++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEECCCC-HHHHHHHH
Confidence 3456689999999999976554444433322 556788774322 24444444
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.039 Score=49.15 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=23.1
Q ss_pred CccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 137 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 137 ~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
...+|||||+|.+.... ...+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 37799999999875431 223444555555555555544
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.50 E-value=0.052 Score=48.79 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999997653
No 149
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.50 E-value=0.063 Score=50.29 Aligned_cols=116 Identities=15% Similarity=0.069 Sum_probs=57.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 104 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.|.-++|.|++|+|||..++..+....... +..++++..- .-..|+..++.......+.-.. ..|..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~ 268 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRV--RLGQLTDR 268 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTC--CGGGCCHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHH--hCCCCCHH
Confidence 445689999999999976554444433321 5567877653 2234555554332211111010 11223333
Q ss_pred HHHHHh-----hCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 105 EQRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 105 ~~~~~~-----~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
++.... .....+.+- |.+.+...+.+-.. -..+++||||..+.+..
T Consensus 269 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 269 DFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 322111 112345553 33444333221100 12488999999998864
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.054 Score=48.76 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=25.2
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 2344556666666555555443
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.44 E-value=0.13 Score=46.43 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998653
No 152
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.42 E-value=0.075 Score=50.04 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=40.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 87 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 87 (433)
.+....+.+-||||||+++. .++... +..+|||+|+...+.|++++++.++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~~~----------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAERH----------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHHHS----------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHHHh----------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 35568999999999998543 222221 55689999999999999999998864
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.39 E-value=0.07 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=16.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+++.||+|+|||..+ ..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999754 3344443
No 154
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.37 E-value=0.037 Score=51.78 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
.++++.||+|+|||.++
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999754
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.061 Score=51.48 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCccEEEEcccchhccCCC--HHHHHHHHhhCCCCCcEEEEEeec
Q 013962 136 SRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
....+|||||+|.+..... ...+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 3467899999998865321 2344444443 244577777765
No 156
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.17 E-value=0.041 Score=55.24 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=65.7
Q ss_pred CeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcccCCCcEEEEc
Q 013962 243 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLDVMGVAHVVNL 317 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~Vi~~ 317 (433)
.+++|.+|++.-+....+.+... ++.+..++|+++..++...++.+.+|..+|+|+|. .+...+++.++.+||.-
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 56999999999888877776543 78999999999999999999999999999999995 45567788888888875
Q ss_pred cCC
Q 013962 318 DLP 320 (433)
Q Consensus 318 ~~~ 320 (433)
...
T Consensus 498 EaH 500 (780)
T 1gm5_A 498 EQH 500 (780)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 157
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.08 E-value=0.14 Score=46.48 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+++.||+|+|||.++ ..+...+
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 46999999999999764 3344443
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.06 E-value=0.068 Score=47.62 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.82 E-value=0.057 Score=50.55 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999764
No 160
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.79 E-value=1.6 Score=39.08 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
|+-+.+.+.. +....++|.||.|+|||...
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHH
Confidence 4555566655 54467999999999999643
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.074 Score=48.07 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=27.6
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEEeecc
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 179 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 179 (433)
.+..++|+||+|.+ +......+..++...+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 45789999999984 33344556666666666665666655443
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.59 E-value=0.088 Score=49.82 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.||+|+|||+++
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 56999999999999865
No 163
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.23 E-value=0.1 Score=48.28 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc---cCcccCCCcE
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VAS---RGLDVMGVAH 313 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~---~Gidip~~~~ 313 (433)
.++++||.+|+++-+..+.+.+.. .++.+..++|+.+..++...++.+..|..+|+|+|+ .+. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 446799999999999999999988 578999999999999998889999999899999995 221 1144456777
Q ss_pred EEEccC
Q 013962 314 VVNLDL 319 (433)
Q Consensus 314 Vi~~~~ 319 (433)
||.-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 775443
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.17 E-value=0.057 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=16.7
Q ss_pred CcEEE--EcCCCChHHHHHHHHHHHHH
Q 013962 27 RDLLG--CAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 27 ~~~l~--~~~TGsGKT~~~~~~~~~~~ 51 (433)
..++| .||.|+|||..+ ..+...+
T Consensus 51 ~~~li~i~G~~G~GKT~L~-~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA-KFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH-HHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH-HHHHHHH
Confidence 35888 899999999754 3344433
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.88 E-value=0.41 Score=43.43 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCccEEEEcccchhccCCCHHHHHHHHhhCCCCCcEEEEE
Q 013962 136 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 175 (433)
Q Consensus 136 ~~~~~vIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~S 175 (433)
....+|||||+|.+... ....+...+...+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999987543 2233444455444444344443
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.83 E-value=0.065 Score=47.87 Aligned_cols=119 Identities=11% Similarity=0.022 Sum_probs=58.9
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCC
Q 013962 22 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 101 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
-+..+.-++|.|++|+|||..++..+...... +..++|++.- .-..|+..++.......+ ... +..|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--------g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~-~~~-l~~g~L 110 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALND--------DRGVAVFSLE-MSAEQLALRALSDLTSIN-MHD-LESGRL 110 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TCEEEEEESS-SCHHHHHHHHHHHHHCCC-HHH-HHHTCC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCC-CCHHHHHHHHHHHhhCCC-HHH-HhcCCC
Confidence 34455669999999999997655444443332 6778888753 334555555543322111 100 011223
Q ss_pred CHHHHHHHh-----hCCCcEEEe-----ccHHHHHHHHcCCCCCCCccEEEEcccchhcc
Q 013962 102 NIAEQRSEL-----RGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 151 (433)
Q Consensus 102 ~~~~~~~~~-----~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 151 (433)
+..++.... ..+.++.|- |+..+...+.+-......+++||||-.+.+..
T Consensus 111 s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 111 DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 332222110 112345542 23344333322111111589999999997753
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.77 E-value=0.047 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=16.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++++.||+|+|||..+ ..+...+
T Consensus 40 ~~ll~G~~G~GKt~la-~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA-IALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHH-HHHHHHH
T ss_pred eEEEECcCCcCHHHHH-HHHHHHh
Confidence 5999999999999754 3344443
No 168
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.47 E-value=0.051 Score=41.99 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~ 43 (433)
..+.++++.||+|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35678999999999999865
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.47 E-value=0.26 Score=41.62 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIP 46 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~ 46 (433)
.+.-+.+.+|+|+|||..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4567899999999999765443
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.44 E-value=0.22 Score=54.84 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
.+.++++.+|+|+|||..+...+.+.... +.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEccccc
Confidence 36789999999999998876655544322 7788888876443
No 171
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.15 E-value=0.047 Score=42.06 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~ 43 (433)
...+.++++.+++|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999754
No 172
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.93 E-value=0.097 Score=41.57 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 14 SIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 14 ~~Q~~~i~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
+-|..++..++.. .-.++.++-|++||...+..++....+. |..+.+++|+..-....
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~-------Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ-------GREVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT-------TCCEEEECSTTHHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc-------CeEEEEEcCchHHHHHH
Confidence 4588888888743 3478899999999987555555544443 89999999997765543
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.56 E-value=0.87 Score=42.74 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999764
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.43 E-value=0.17 Score=46.73 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 13 TSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 13 ~~~Q~~~i~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+-+..++..++. +..+++.+|||||||.+ +..++..+
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 3456666666553 34589999999999964 34444443
No 175
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.38 E-value=0.19 Score=44.80 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=31.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhc----CCCCCCCC----ceEEEEcCcHHH-HHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQ----TPVGRGDG----PLALVLAPTREL-AQQIEKEVKA 84 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~~~~----~~~lvl~P~~~L-~~q~~~~~~~ 84 (433)
.-+++.+++|+|||..++..+....... .......+ ..++++.....+ ..++.+.+..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999976554444322110 00000112 678888765443 4444444444
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.31 E-value=0.23 Score=47.75 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999754
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.98 E-value=2.9 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~ 45 (433)
+.+.+.++.|+|||.++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp EEEEEECCTTTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3466789999999976543
No 178
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.86 E-value=3 Score=33.59 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=53.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... ++.+..+.|+....+....+ .+..+|+|+| +.+.. ..++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCccc
Confidence 457999999999999998888774 67888899998766554433 3578999999 44443 456777
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 123 v~~VI~ 128 (191)
T 2p6n_A 123 IQHVIN 128 (191)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.64 E-value=0.18 Score=42.87 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
|.-+++.|++|+|||..++..+....... +..+++++-. .-..+..+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHH
Confidence 45689999999999976655454444442 5567777643 234445555443
No 180
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.55 E-value=0.37 Score=50.85 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=63.3
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCcccCCCcEEEE
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVAT-DVASRGLDVMGVAHVVN 316 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidip~~~~Vi~ 316 (433)
+.+++|.+|++..+....+.+... ++.+..+++..+..++...++.+..|..+|+|+| ..+...+++.++.+||.
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 467999999999988888777643 5788999999999999999999999999999999 46666788888887775
No 181
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.54 E-value=0.35 Score=41.50 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=19.3
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
+..+..+.+.+|||||||.. +..++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl-l~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT-IASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH-HHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH-HHHHHHh
Confidence 45666799999999999964 3334433
No 182
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.48 E-value=0.41 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+|+.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999754
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.45 E-value=0.17 Score=42.81 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=31.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
..|.-+++.+|+|+|||..++..+... ... +..++++..... ..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~-~~~-------~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG-LKM-------GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH-HHT-------TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-Hhc-------CCeEEEEEccCC-HHHHHHHHH
Confidence 355678999999999997654433333 321 556777765432 344555444
No 184
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.42 E-value=0.33 Score=50.86 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc---CcccCCCcE
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASR---GLDVMGVAH 313 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~---Gidip~~~~ 313 (433)
.+.++||.+|+++.+..+.+.+.. .++.+..+||+++..++...++.+..|..+|+|+|+ .+.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 346699999999999999999988 467899999999999999999999999999999994 2211 145567888
Q ss_pred EEEccC
Q 013962 314 VVNLDL 319 (433)
Q Consensus 314 Vi~~~~ 319 (433)
||.-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 876443
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.33 E-value=1.2 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+++++.||+|+|||.++ ..+...+
T Consensus 207 ~~~vlL~G~~GtGKT~la-~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA-EGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH-HHHHHHH
Confidence 457999999999999764 3344443
No 186
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.04 E-value=2.8 Score=32.65 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=54.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... ++.+..++|+.........+ .+..+|+|+| +.+.. ..++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhc
Confidence 567999999999999988888774 67888999988766554433 3568899999 33333 456677
Q ss_pred ccEEEEcc
Q 013962 138 VSFVILDE 145 (433)
Q Consensus 138 ~~~vIiDE 145 (433)
+++||.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888633
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.84 E-value=0.33 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+++++.||+|+|||.++ ..+...+
T Consensus 191 ~~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CCceEEEcCCCCCHHHHH-HHHHHHH
Confidence 357999999999999754 3344444
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.66 E-value=0.22 Score=47.29 Aligned_cols=31 Identities=26% Similarity=0.080 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHh-hcCCcEEEEcCCCChHHHH
Q 013962 12 PTSIQAQAMPVA-LSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 12 ~~~~Q~~~i~~~-~~~~~~l~~~~TGsGKT~~ 42 (433)
+.+.+..-+... ..+..+++.||||||||.+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344444444443 3677899999999999964
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.53 E-value=0.36 Score=48.37 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+|+.+|+|+|||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 46999999999999754
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.26 E-value=0.88 Score=40.21 Aligned_cols=54 Identities=13% Similarity=-0.097 Sum_probs=33.8
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..|.-++|.|++|+|||..++..+.....+ +..+++++.- .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 3445669999999999997655444443322 5678887753 3345555555543
No 191
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.23 E-value=0.31 Score=43.94 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.+..+++.||||||||.+ +..++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhccc
Confidence 445789999999999964 444444443
No 192
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.19 E-value=0.33 Score=45.30 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
..++++.|+||+|||.. +..++..+... +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 46899999999999976 45555555553 677888888777754
No 193
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.81 E-value=3.6 Score=32.04 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=53.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLA-RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGT-TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhh-cCCCccc
Confidence 567999999999999888888763 67888899998766554433 3568999999 3333 3456677
Q ss_pred ccEEEEcc
Q 013962 138 VSFVILDE 145 (433)
Q Consensus 138 ~~~vIiDE 145 (433)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.34 Score=44.81 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+|+.||+|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 3579999999999998653
No 195
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.39 E-value=0.38 Score=40.19 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=25.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
+..|..+++.+|+|+|||..+.. ++..+... +..++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~-l~~~~~~~-------~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLH-FIAKGLRD-------GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH-HHHHHHHH-------TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEEc
Confidence 33566789999999999965433 33333322 445666653
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.38 Score=44.53 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+|+.||+|+|||+.+-
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998653
No 197
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.27 E-value=0.42 Score=43.82 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
.+.++++.++||+|||... ..++..+... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~-~~~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA-KMLLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHH-HHHHHHHHHC-------CCEEEEEeCCcC
Confidence 4578999999999999754 3344433332 667788877654
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.22 E-value=1.4 Score=36.30 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC-----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCcccCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMG 310 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidip~ 310 (433)
..++||.+|+++.+..+.+.+... +..+..++|+.+..+.... +.++..+|+|+|. .+ ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347999999999999888887764 6788999998876655443 4456678999994 22 12345566
Q ss_pred CcEEEEc
Q 013962 311 VAHVVNL 317 (433)
Q Consensus 311 ~~~Vi~~ 317 (433)
++.+|.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 6666643
No 199
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.12 E-value=3.3 Score=32.67 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=52.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++..+..+++.+... ++.+..++|+.........+ .+..+|+|+| +.+. ...++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVCA-RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSCC-TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cchh-cCCCccc
Confidence 678999999999999888877763 67888999998766555433 3578999999 2222 3456677
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 200
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.12 E-value=0.44 Score=39.55 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=17.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
++++.++.|.|||.+++..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999998765544443
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.98 E-value=1.8 Score=43.81 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
++.+++.+|+|+|||..+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999754
No 202
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=88.86 E-value=0.27 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.3
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.++.
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 44456665 7889999999998753
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.73 E-value=0.83 Score=43.67 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 300 (433)
+.+||.+|++.-+....+.|...++.+..+++..+..++..++..+..|..+++++|+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5699999999999999999999999999999999999999999999999999999994
No 204
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.64 E-value=4.3 Score=33.23 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=53.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+.........+ .+..+|+|+| +... ...++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCcc
Confidence 668999999999999888888774 67888999998876655443 3568899999 3333 3456677
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 205
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.56 E-value=0.42 Score=43.42 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
..+..+++.||||||||.+ +..++..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTl-l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT-IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 3456789999999999964 34444443
No 206
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.42 E-value=0.51 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+|+.||+|+|||+.+-
T Consensus 207 rGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CEEEEESCTTTTHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998653
No 207
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.10 E-value=0.9 Score=44.14 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CeEEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHH--hcCCCcEEEEec
Q 013962 243 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF--RNGSTNILVATD 300 (433)
Q Consensus 243 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 300 (433)
+.+||.+|++..++...+.|...++.+..++++++..++..++..+ ..+..+|+++|+
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5699999999999999999999999999999999999998888888 467889999996
No 208
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.07 E-value=0.29 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=18.7
Q ss_pred HHhhcCCcEEEEcCCCChHHHHH
Q 013962 21 PVALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 44456789999999999999754
No 209
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=88.01 E-value=0.36 Score=42.72 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.3
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.++.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCeEEEEEECCCCCCCceEec
Confidence 34456665 7889999999998753
No 210
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=87.99 E-value=0.38 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=18.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 20 MPVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 20 i~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
+..+++|.+ ++..|.||||||.++.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344456665 7789999999998864
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.97 E-value=0.54 Score=41.13 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~ 45 (433)
++.+++.+++|+|||.++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34688899999999976543
No 212
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.90 E-value=0.53 Score=38.73 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=25.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHH
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~ 42 (433)
+.-|..++..+..|..+.+.+|.|+|||..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445778899998888999999999999964
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.85 E-value=0.77 Score=42.81 Aligned_cols=51 Identities=14% Similarity=-0.066 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
.|.-++|.|++|+|||..++..+...... +..+++++.- .-..|+..++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEECC-CCHHHHHHHHHH
Confidence 45569999999999997655544444332 6678888753 333444444443
No 214
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.74 E-value=0.37 Score=43.35 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
+.-++|.+|+|+|||..++ .++..+... +..++++.+...+..
T Consensus 61 G~i~~I~GppGsGKSTLal-~la~~~~~~-------gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLAL-HAIAEAQKM-------GGVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEecccccch
Confidence 4468999999999997544 444443332 667888876554433
No 215
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=87.63 E-value=0.38 Score=43.07 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=19.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 19 AMPVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 19 ~i~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.+..+++|.+ ++..|.||||||.++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4445556765 6789999999999863
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.62 E-value=0.59 Score=40.88 Aligned_cols=18 Identities=22% Similarity=0.050 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358889999999998653
No 217
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=87.61 E-value=5.6 Score=27.83 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=43.6
Q ss_pred EEEEEeccccHHHHHHHHHHCCCceeeecCCCCHHHHHHHHHHHhcCCCc
Q 013962 245 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 294 (433)
Q Consensus 245 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 294 (433)
.+||.+..+....+...++..|..++.++++...+.|.+-++.|.+.-++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 57788788888889999999999999999999999999999999875544
No 218
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.60 E-value=0.49 Score=41.52 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=29.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 76 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~ 76 (433)
.+++.+|+|+|||..++..+.... ... .+..++++..-.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g-----~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQY-----PDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHC-----TTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcC-----CCceEEEEeccchhhH
Confidence 589999999999976655444443 321 1678899887766644
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.58 E-value=0.4 Score=43.21 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
.+.-+++.+++|+|||..++..+... ... +..++++.....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~~-------g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QRE-------GKTCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHT-------TCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHC-------CCeEEEEeCCCC
Confidence 34568999999999998765544443 332 566888876433
No 220
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=87.57 E-value=0.35 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..|.||||||.++
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33446665 788999999999875
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.52 E-value=0.36 Score=41.47 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4568999999999999754
No 222
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=87.51 E-value=0.36 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.++.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 33456665 7889999999998864
No 223
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.46 E-value=0.39 Score=43.99 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=19.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 19 AMPVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 19 ~i~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.+..+++|.+ ++..|.||||||.++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 3455567765 6789999999999863
No 224
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=87.39 E-value=0.42 Score=42.44 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.5
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 19 AMPVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 19 ~i~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.+..+++|.+ ++..|+||||||.++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 3445567765 7789999999998753
No 225
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=87.38 E-value=0.42 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.3
Q ss_pred HhhcCCc--EEEEcCCCChHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.+++|.+ ++..|.||||||.++
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 3456665 788999999999875
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.37 E-value=0.64 Score=42.66 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+.+|+.||+|+|||+.+-
T Consensus 217 rGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SEEEEESSTTTTHHHHHH
T ss_pred CCCceECCCCchHHHHHH
Confidence 569999999999998653
No 227
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=87.31 E-value=0.43 Score=42.86 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=17.8
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..|.||||||.++
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34456665 788999999999875
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.24 E-value=10 Score=34.87 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
.+.+.+++|+|||.++.
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999997654
No 229
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=87.23 E-value=0.43 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=17.7
Q ss_pred HhhcCCc--EEEEcCCCChHHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.+++|.+ ++..|.||||||.++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCcceEEEECCCCCCcceEee
Confidence 3456665 7889999999998753
No 230
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=87.17 E-value=0.43 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..|.||||||.++
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34456665 788999999999875
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.13 E-value=0.68 Score=38.21 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCc
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 71 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~ 71 (433)
.+.-+++.+|+|+|||..+...+. .. +..++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~--------~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS--------GKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH--------CSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc--------CCcEEEEECC
Confidence 456689999999999976544333 12 5667777643
No 232
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=87.09 E-value=0.4 Score=43.22 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=17.3
Q ss_pred HhhcCCc--EEEEcCCCChHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.+++|.+ ++..|.||||||.++
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3456665 778999999999875
No 233
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.00 E-value=0.34 Score=45.83 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHH
Q 013962 18 QAMPVALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 18 ~~i~~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
.+...+..+.++++.||+|+|||..+
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34455557889999999999999754
No 234
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=86.96 E-value=0.45 Score=42.54 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.2
Q ss_pred HhhcCCc--EEEEcCCCChHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.+++|.+ ++..++||||||.++
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 3446665 788999999999875
No 235
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=0.58 Score=43.41 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+|+.||+|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3679999999999998653
No 236
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.84 E-value=0.33 Score=39.41 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 237
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=86.83 E-value=0.43 Score=42.72 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=17.7
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..|+||||||.++
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34456665 788999999999875
No 238
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=86.77 E-value=0.43 Score=42.84 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=17.7
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..+.||||||.++
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCceEEEEECCCCCCCceEe
Confidence 34456665 677999999999875
No 239
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=86.76 E-value=0.44 Score=42.76 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=18.5
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q 013962 20 MPVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 20 i~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
+..+++|.+ ++..|.||||||.++
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344556765 678999999999875
No 240
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=86.73 E-value=0.47 Score=42.81 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=17.7
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
..+++|.+ ++..|.||||||.++
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34456765 788999999999875
No 241
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.73 E-value=2.1 Score=35.89 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=52.5
Q ss_pred CCCeEEEEEeccccHHHHHHHHHH----CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc-cCcccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS-RGLDVMG 310 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidip~ 310 (433)
.+.++||.+|+++.+..+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|+ .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 456699999999998887776655 37889999999887766554432 468999994 122 2346677
Q ss_pred CcEEEEcc
Q 013962 311 VAHVVNLD 318 (433)
Q Consensus 311 ~~~Vi~~~ 318 (433)
++++|.-+
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 77777543
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.67 E-value=0.59 Score=41.99 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
+.-+++.+|+|+|||..++..+... ... +..++++.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~-~~~-------g~~vlyi~~E~~ 100 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA-QAA-------GGIAAFIDAEHA 100 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HHT-------TCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HhC-------CCeEEEEECCCC
Confidence 4568999999999997655444443 332 566788775443
No 243
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=86.52 E-value=0.42 Score=42.96 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=18.2
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.++.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34456665 7889999999998753
No 244
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.50 E-value=2.4 Score=35.89 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc------ccCcccCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA------SRGLDVMG 310 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~------~~Gidip~ 310 (433)
+.++||.+|+++.+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+ ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 456999999999988888777654 78888999988765544332 24678999994 22 13456667
Q ss_pred CcEEEEc
Q 013962 311 VAHVVNL 317 (433)
Q Consensus 311 ~~~Vi~~ 317 (433)
+++||.-
T Consensus 187 ~~~lViD 193 (249)
T 3ber_A 187 LKYLVMD 193 (249)
T ss_dssp CCEEEEC
T ss_pred cCEEEEc
Confidence 7776654
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.48 E-value=0.38 Score=42.71 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-++|.||||+|||..+.
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58899999999997543
No 246
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=86.45 E-value=11 Score=36.04 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=57.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+...+. .++.+..++|+.........+ .+..+|+|+| +.+.. ..++.+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCccc
Confidence 77899999999999999999988754 267888899988766554433 3678999999 44433 566777
Q ss_pred ccEEEEcc
Q 013962 138 VSFVILDE 145 (433)
Q Consensus 138 ~~~vIiDE 145 (433)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88888543
No 247
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=86.44 E-value=0.45 Score=43.15 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred HHHHHHHH--------HhhcCCc--EEEEcCCCChHHHHH
Q 013962 14 SIQAQAMP--------VALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 14 ~~Q~~~i~--------~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.-|.+.+. .+++|.+ ++..|.||||||.++
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34666654 3446665 778999999999875
No 248
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=86.43 E-value=0.47 Score=43.00 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=17.9
Q ss_pred HhhcCCc--EEEEcCCCChHHHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAFTI 45 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~~~ 45 (433)
.+++|.+ ++..|.||||||.++.-
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHhcCCceEEEEecCCCCCCCeEecc
Confidence 3456665 78899999999998643
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.04 E-value=0.49 Score=37.88 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.++-+++.||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999964
No 250
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.01 E-value=0.97 Score=35.68 Aligned_cols=25 Identities=20% Similarity=0.034 Sum_probs=17.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
-+.+.++.|||||.. +..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhHh
Confidence 467899999999964 4445555443
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.00 E-value=0.42 Score=41.89 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-++|.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999997543
No 252
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=85.99 E-value=0.47 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=17.6
Q ss_pred HhhcCCc--EEEEcCCCChHHHHHH
Q 013962 22 VALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 22 ~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.+++|.+ ++..|.||||||.++.
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCceEEEEeecCCCCCcceecc
Confidence 3446665 7889999999998753
No 253
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=85.95 E-value=0.42 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=18.4
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q 013962 20 MPVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 20 i~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
+..+++|.+ ++..|.||||||.++
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 344556765 777999999999875
No 254
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=85.90 E-value=0.49 Score=43.39 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=19.3
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013962 19 AMPVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 19 ~i~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.+..+++|.+ ++..|.||||||.++
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 3455567765 788999999999875
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.75 E-value=0.44 Score=41.68 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-++|.||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999997543
No 256
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.72 E-value=1.2 Score=39.03 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
..++++.||+|+|||.++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999765
No 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.58 E-value=0.73 Score=40.43 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
++.+++.||+|+|||..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456999999999999764
No 258
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.57 E-value=0.87 Score=41.17 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
...++++.||+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999865
No 259
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=85.54 E-value=0.57 Score=43.38 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.+++
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEee
Confidence 33456765 7889999999998763
No 260
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=85.45 E-value=0.53 Score=42.58 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=18.2
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHHH
Q 013962 21 PVALSGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 21 ~~~~~~~~--~l~~~~TGsGKT~~~~ 44 (433)
..+++|.+ ++..|.||||||.++.
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhcCCCceEEEEeCCCCCCCceEee
Confidence 44456665 7789999999998753
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.40 E-value=0.77 Score=41.50 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 73 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~ 73 (433)
+.-++|.+++|+|||..++..+ ..+... +..++|+..-..
T Consensus 74 G~li~I~G~pGsGKTtlal~la-~~~~~~-------g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIV-AQAQKA-------GGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH-HHHHHT-------TCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHH-HHHHHC-------CCeEEEEECCCC
Confidence 4568999999999997655444 433332 566788776543
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.38 E-value=0.83 Score=39.89 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=25.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
+..|.-++|.||+|+|||..+.. ++..+... .|..++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~-ia~~~~~~------~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ-QALQWGTA------MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH-HHHHHHHT------SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH-HHHHHHHH------cCCeEEEEeC
Confidence 44567799999999999965433 33333321 1445666654
No 263
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.29 E-value=1.8 Score=35.97 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC-----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----ccCcccC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATDV-A-----SRGLDVM 309 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~Gidip 309 (433)
.+.++||.+|+++.+..+.+.+... ++.+..++|+.+..+....+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3467999999999999988888764 57788899988876654433 25789999952 2 1234555
Q ss_pred CCcEEEE
Q 013962 310 GVAHVVN 316 (433)
Q Consensus 310 ~~~~Vi~ 316 (433)
.++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666664
No 264
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.27 E-value=1 Score=38.37 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999754
No 265
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.23 E-value=0.49 Score=41.61 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
...++++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999754
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.86 E-value=0.59 Score=38.09 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.++.+++.|++|||||.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567999999999999754
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.85 E-value=0.57 Score=42.37 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~ 42 (433)
..|..+++.||||||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3678899999999999963
No 268
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.76 E-value=0.81 Score=48.57 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=34.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 84 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 84 (433)
-+|.|..|||||.+.+.-+...+.... .+.+++++||... .-++.+++..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCcc-cHHHHHHHHH
Confidence 378899999999887776666655532 2578999999764 3334444443
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.72 E-value=0.47 Score=37.73 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.70 E-value=0.96 Score=39.73 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-+++.+++|+|||.++.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47889999999997644
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.66 E-value=0.59 Score=37.45 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
...+++.|++|||||.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999997653
No 272
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=84.52 E-value=16 Score=35.20 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+...+. .++.+..++|+.........+ .+..+|+|+| +.+.. ..++.+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCccc
Confidence 67899999999999999999988754 267888899998766554433 3678999999 44443 566777
Q ss_pred ccEEEEccc
Q 013962 138 VSFVILDEA 146 (433)
Q Consensus 138 ~~~vIiDE~ 146 (433)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886443
No 273
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.51 E-value=0.91 Score=39.60 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999754
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.48 E-value=0.62 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+.-+++.||+|+|||.++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3556889999999999753
No 275
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.47 E-value=0.46 Score=38.76 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
+.+++.+|+|+|||..+ ..++..
T Consensus 59 n~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHHH
Confidence 35899999999999754 444443
No 276
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.47 E-value=1.4 Score=41.60 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+.+++|.++||||||.+ +..++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHH
Confidence 46899999999999965 44444433
No 277
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.43 E-value=1.1 Score=37.88 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.9
Q ss_pred HhhcCCcEEEEcCCCChHHHHHH
Q 013962 22 VALSGRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~~ 44 (433)
.+..|.-+.+.+|+|+|||..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 34466779999999999996543
No 278
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.24 E-value=3.8 Score=32.75 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=43.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHH----hhCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... ++.+..+.|+......... ..+..+|+|+| +.+.. ..++.+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chhhc-CCCccc
Confidence 677999999999999888888763 6788888887654433222 24678899999 22222 345667
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 788775
No 279
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.21 E-value=0.97 Score=41.30 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
..++++.||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997653
No 280
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.08 E-value=3.7 Score=34.13 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc--CcccC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA----SR--GLDVM 309 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~--Gidip 309 (433)
.+.++||.+|+++.+....+.+... ++.+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3466999999999999888888765 46788888887655443332 3578999994 22 11 24555
Q ss_pred CCcEEEE
Q 013962 310 GVAHVVN 316 (433)
Q Consensus 310 ~~~~Vi~ 316 (433)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 5666554
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.05 E-value=0.47 Score=37.48 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999997543
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.03 E-value=1.5 Score=37.88 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=19.4
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHH
Q 013962 22 VALSGRDLLGCAETGSGKTAAFTIPM 47 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~~~~~ 47 (433)
-+..+.-++|.+|+|+|||..+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34466779999999999997654433
No 283
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=83.71 E-value=7.4 Score=30.51 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ...++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS-TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chh-cCcchhh
Confidence 567999999999999888888774 67888899988766554433 35789999992 222 2345566
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 100 ~~~Vi~ 105 (172)
T 1t5i_A 100 VNIAFN 105 (172)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 284
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.62 E-value=0.63 Score=39.65 Aligned_cols=16 Identities=38% Similarity=0.102 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-++|.||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999754
No 285
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.60 E-value=7.4 Score=35.49 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=54.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCC
Q 013962 61 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLS 136 (433)
Q Consensus 61 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~ 136 (433)
.+.++||.|+++.-+...++.+... ++.+..++|+....+....+ .+..+|+|+| +.+.. ..++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcc
Confidence 3778999999999999988888773 67888999998866554433 3578999999 44443 46677
Q ss_pred CccEEEE
Q 013962 137 RVSFVIL 143 (433)
Q Consensus 137 ~~~~vIi 143 (433)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 7888875
No 286
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.60 E-value=3.4 Score=37.44 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=53.7
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC-----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCcccCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMG 310 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidip~ 310 (433)
..++||.+|++..+..+.+.+... ++.+..++|+.+..+.... +..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 457999999999999888887764 6888999998887665543 3456678999994 22 23456677
Q ss_pred CcEEEEc
Q 013962 311 VAHVVNL 317 (433)
Q Consensus 311 ~~~Vi~~ 317 (433)
+++||.-
T Consensus 153 ~~~vViD 159 (391)
T 1xti_A 153 IKHFILD 159 (391)
T ss_dssp CSEEEEC
T ss_pred cCEEEEe
Confidence 7777753
No 287
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.50 E-value=3.3 Score=33.55 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC--CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----c-cCcccCCCc
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA----S-RGLDVMGVA 312 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~Gidip~~~ 312 (433)
.+.++||.+|++..+..+.+.+... ...+..++|+.+.......+. ...+|+|+|. .+ . ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4567999999999999999988876 467788888877655443332 2467999994 11 1 234556666
Q ss_pred EEEEc
Q 013962 313 HVVNL 317 (433)
Q Consensus 313 ~Vi~~ 317 (433)
.||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.47 E-value=0.38 Score=38.79 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.1
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~ 42 (433)
+..+..+++.||+|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 33566789999999999974
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.45 E-value=1.1 Score=39.58 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~ 45 (433)
-+.+.+++|+|||.++..
T Consensus 107 vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999976543
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.43 E-value=0.72 Score=37.70 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~ 43 (433)
+..+.-+++.||+|+|||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345677999999999999743
No 291
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.42 E-value=2.5 Score=44.81 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=44.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTP----VGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~----~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
...+|.|.-|||||.+...-++..+..... ...-.-..+|+|+=|+.-+.++.+++....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 456999999999999887777777764210 000124579999999999999998887754
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.12 E-value=0.78 Score=37.36 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.++-+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999964
No 293
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.10 E-value=0.53 Score=41.94 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHH
Q 013962 24 LSGRDLLGCAETGSGKTA 41 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~ 41 (433)
..++.+.+.+|||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 367889999999999996
No 294
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.89 E-value=1.1 Score=40.38 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+++.||+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.88 E-value=0.75 Score=36.65 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|++|+|||.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999754
No 296
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.77 E-value=7.7 Score=32.93 Aligned_cols=73 Identities=21% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccc--cCcccC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VAS--RGLDVM 309 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 309 (433)
.+.++||.+|+++.+....+.++.. +..+..+.|+.........+ ..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3456999999999999988888764 56677788877765544332 333 78999994 111 245667
Q ss_pred CCcEEEEc
Q 013962 310 GVAHVVNL 317 (433)
Q Consensus 310 ~~~~Vi~~ 317 (433)
++.+||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 77777653
No 297
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.61 E-value=0.7 Score=41.01 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999754
No 298
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=82.50 E-value=1.2 Score=38.02 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
.+++.||+|+|||+.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998654
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.50 E-value=0.73 Score=40.69 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
.++|.||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997553
No 300
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.98 E-value=4 Score=33.03 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC-----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc-CcccC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA----SR-GLDVM 309 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~-Gidip 309 (433)
.+.++||.+|+++.+..+.+.+... +..+..++|+.+..+.... + .+..+|+|+|. .+ .. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3456999999999998888877653 5678888888776544322 2 34678999995 22 22 23455
Q ss_pred CCcEEEE
Q 013962 310 GVAHVVN 316 (433)
Q Consensus 310 ~~~~Vi~ 316 (433)
+++.+|.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 5666664
No 301
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.87 E-value=0.57 Score=40.83 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-+++.||+|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999754
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.87 E-value=0.7 Score=37.07 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|||||.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999754
No 303
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.78 E-value=1.6 Score=38.77 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH-HHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL-AQQIEKEVKA 84 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L-~~q~~~~~~~ 84 (433)
+.-+++.+++|+|||..++..+....... ...+.+..++++.....+ ..++.+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhccc--ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999976544433321110 000114577887765432 3344433333
No 304
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.77 E-value=0.79 Score=40.75 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997553
No 305
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=81.74 E-value=0.93 Score=40.71 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.1
Q ss_pred cCCc--EEEEcCCCChHHHHHH
Q 013962 25 SGRD--LLGCAETGSGKTAAFT 44 (433)
Q Consensus 25 ~~~~--~l~~~~TGsGKT~~~~ 44 (433)
.|.+ ++..|.||||||.++.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3655 6889999999998764
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.70 E-value=0.89 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013962 24 LSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~ 42 (433)
..+.-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466789999999999964
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.70 E-value=0.77 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+.+.|++|||||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999743
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.51 E-value=1 Score=40.43 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
+.-+++.+|+|+|||..++..+....... ...+.+..++++....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~--~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPG--AGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCB--TTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccc--ccCCCCCeEEEEECCC
Confidence 34589999999999976544333322110 0011256788887654
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.43 E-value=1 Score=36.58 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.++-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 456689999999999964
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=81.32 E-value=9.3 Score=36.04 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=23.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
.+++.+++|+|||.++. .++..+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~-kLA~~l~~~-------G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS-KLAYYYQRK-------GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEec
Confidence 47788999999997654 344444332 566666664
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.24 E-value=0.68 Score=36.43 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|+.|||||.++
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 312
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.23 E-value=2.8 Score=34.74 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=46.3
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC---CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCcccCCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMGV 311 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidip~~ 311 (433)
.+.++||.+|+++.+..+.+.+... +..+..++|+.+....... +. ...+|+|+|+ .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4566999999999999998888774 6778888887665443332 22 3478999994 11 124456666
Q ss_pred cEEEEc
Q 013962 312 AHVVNL 317 (433)
Q Consensus 312 ~~Vi~~ 317 (433)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 666653
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.21 E-value=0.71 Score=36.66 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=80.92 E-value=1.1 Score=36.49 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIP 46 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~ 46 (433)
-.++.|++|||||..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 3689999999999865443
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.80 E-value=1 Score=36.61 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.|.-+.+.||+|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999964
No 316
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.79 E-value=1 Score=40.88 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
..++++.||+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999765
No 317
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.77 E-value=1.3 Score=40.39 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36889999999997654
No 318
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.76 E-value=1.8 Score=37.95 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChHHHH
Q 013962 26 GRDLLGCAETGSGKTAA 42 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~ 42 (433)
+.-+.+.+|+|+|||.+
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 44578899999999964
No 319
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.75 E-value=0.91 Score=42.55 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+++++.||+|+|||..+-
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999998653
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.45 E-value=2.1 Score=33.92 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
.-+.+.++.|+|||.. +..++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl-~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL-LKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHH-HHHHHHhcc
Confidence 3478899999999953 444554443
No 321
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=80.44 E-value=0.82 Score=36.50 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 86 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 86 (433)
++|.+++|||||..+.. +. .. +..++++.+-...-.++.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~-la----~~-------~~~~~yiaT~~~~d~e~~~rI~~h~ 47 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI----GD-------APQVLYIATSQILDDEMAARIQHHK 47 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH----CS-------CSSEEEEECCCC------CHHHHHH
T ss_pred EEEECCCCCcHHHHHHH-HH----hc-------CCCeEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999964432 21 11 3346788775555455555555543
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.39 E-value=0.71 Score=36.56 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.|.-+.+.||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999643
No 323
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.37 E-value=2.4 Score=40.52 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCV 52 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~ 52 (433)
..+++|.+.||||||.+ +..++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999975 444554444
No 324
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.26 E-value=1.7 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
.-+.+.+|+|+|||.+.
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35789999999999653
No 325
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.12 E-value=1.3 Score=42.19 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=32.7
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 83 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 83 (433)
+..+.-++|.|++|+|||..++..+...... .+..+++++--- -..|+..++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~-------~g~~vl~~s~E~-s~~~l~~r~~ 291 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-------MGKKVGLAMLEE-SVEETAEDLI 291 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-------SCCCEEEEESSS-CHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh-------cCCcEEEEeccC-CHHHHHHHHH
Confidence 3455669999999999997655444443322 155677776532 2445555543
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=79.96 E-value=1.2 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
+-+.+.||+|+|||.+
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999964
No 327
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.93 E-value=0.62 Score=39.98 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997653
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=79.87 E-value=0.87 Score=36.53 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 329
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.80 E-value=17 Score=31.65 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=52.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+.........+ .+..+|+|+| +.... ..++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccc
Confidence 667999999999888887777653 68889999998765554433 4678999999 43333 456777
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888885
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=79.78 E-value=1.5 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=22.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
.+++.+++|+|||.++...+ ..+... |.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La-~~l~~~-------G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLA-RYIQKR-------GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHH-HHHHHH-------HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEe
Confidence 58899999999997654433 333332 55666665
No 331
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=79.72 E-value=2.9 Score=34.91 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=42.8
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc-CcccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-----VASR-GLDVMG 310 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~ 310 (433)
.+.++||.+|+++.+..+.+.+... +..+..++|+.+... ..+.+..+..+|+|+|+ .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3457999999999999888888764 456667777654332 23445566688999993 2222 345555
Q ss_pred CcEEEE
Q 013962 311 VAHVVN 316 (433)
Q Consensus 311 ~~~Vi~ 316 (433)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666664
No 332
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.63 E-value=1.2 Score=39.17 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.||+|+|||.++
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999765
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.54 E-value=2.1 Score=34.15 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|||||..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345889999999999754
No 334
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.49 E-value=1.3 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.|+-+.+.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999964
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.46 E-value=2.7 Score=33.53 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|+.|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.98 E-value=1 Score=36.68 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|+.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999643
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.82 E-value=0.82 Score=36.19 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999753
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.70 E-value=0.98 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
+-++|.||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478999999999964
No 339
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.55 E-value=35 Score=33.47 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=58.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... ++.+..++++....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l~-~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLR-EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCCS-TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chhh-CCcccCC
Confidence 778999999999999888888774 67788888887655544432 3578999999 3333 3566778
Q ss_pred ccEEEEcccchh
Q 013962 138 VSFVILDEADRM 149 (433)
Q Consensus 138 ~~~vIiDE~h~~ 149 (433)
+++||+-|++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888754
No 340
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=78.09 E-value=3.5 Score=38.27 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=47.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 141 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 141 (433)
+.+++|.||++.-+...++.+... ++.+..++|............+..+|+|+| +.+.. ..++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT-----~v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEES-----SSTTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEEC-----Chhhe-eeccC-ceEE
Confidence 578999999999999998888874 577888888654444444445678999999 44333 45566 7777
Q ss_pred E
Q 013962 142 I 142 (433)
Q Consensus 142 I 142 (433)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 341
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.94 E-value=2.2 Score=33.40 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+++++.++.|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999997653
No 342
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.90 E-value=1.1 Score=37.08 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.4
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~ 42 (433)
+..|+-+.|.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34566789999999999964
No 343
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.85 E-value=1.7 Score=34.62 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.8
Q ss_pred cEEEEcCCCChHHHH
Q 013962 28 DLLGCAETGSGKTAA 42 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~ 42 (433)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999964
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.20 E-value=1.4 Score=37.40 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999753
No 345
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.20 E-value=2.4 Score=38.13 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
.-+.+.+|+|+|||.+.
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34789999999999753
No 346
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.04 E-value=2.5 Score=37.51 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
.-+.+.+|+|+|||.+
T Consensus 130 ~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTT 145 (328)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999964
No 347
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.04 E-value=1.1 Score=36.48 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|+.|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.02 E-value=2.3 Score=39.88 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 013962 28 DLLGCAETGSGKTAA 42 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~ 42 (433)
-+.+.|++|+|||.+
T Consensus 295 VI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCcccHHHH
Confidence 478899999999964
No 349
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.80 E-value=3.9 Score=42.79 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----CC----ceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCcc-cCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGSTNILVATD-VASRGLD-VMGV 311 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gid-ip~~ 311 (433)
+.++||.+|+++.+..+.+.+... ++ .+..++|+.+..++....+.+.+ .+|+|+|+ .+..-+. +..+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 456999999999998888877653 55 78899999999888777777776 88999995 2222221 5567
Q ss_pred cEEEEcc
Q 013962 312 AHVVNLD 318 (433)
Q Consensus 312 ~~Vi~~~ 318 (433)
++||.-.
T Consensus 177 ~~lViDE 183 (1054)
T 1gku_B 177 DFIFVDD 183 (1054)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 7777543
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.64 E-value=1.4 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 351
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.60 E-value=1.2 Score=35.81 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
.-+++.+|+|+|||..+
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999743
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=76.59 E-value=1.7 Score=35.58 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=15.7
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q 013962 22 VALSGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~ 42 (433)
.+..|+-+.+.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 455677789999999999964
No 353
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.49 E-value=1.5 Score=38.98 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999753
No 354
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=76.41 E-value=9.9 Score=34.50 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=54.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGT-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cccc-cCCCccC
Confidence 578999999999999988888874 67788899998766655433 3568899999 3333 3566778
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888884
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.38 E-value=1.5 Score=34.13 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQH 50 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~ 50 (433)
.|.-+.+.+|.|+|||. .+-.+...
T Consensus 32 ~Ge~v~L~G~nGaGKTT-Llr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT-LTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHh
Confidence 45568899999999995 33333333
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.35 E-value=2.3 Score=37.10 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTI 45 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~ 45 (433)
.+++.+++|+|||.++..
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467789999999976543
No 357
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.28 E-value=2.4 Score=36.46 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34999999999999743
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.19 E-value=2 Score=36.41 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|+|||.++
T Consensus 48 g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TCCEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 789999999999999754
No 359
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.14 E-value=1.1 Score=35.96 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 360
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.14 E-value=1.4 Score=42.71 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999743
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.14 E-value=2.9 Score=33.88 Aligned_cols=16 Identities=31% Similarity=-0.022 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-+.+.|++|||||..+
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999643
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.88 E-value=1.2 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.81 E-value=2.5 Score=34.71 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFT 44 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~ 44 (433)
.+++.|++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997643
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.77 E-value=1.3 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.69 E-value=1.6 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
...+++.|++|||||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 366
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.67 E-value=11 Score=33.54 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=52.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+.........+ .+..+|+|+|. .+.. ..++.+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCccc
Confidence 677999999999999888888774 67888899988766554433 35688999993 2222 345667
Q ss_pred ccEEEEc
Q 013962 138 VSFVILD 144 (433)
Q Consensus 138 ~~~vIiD 144 (433)
+++||.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 367
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=75.58 E-value=1.8 Score=43.19 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.5
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013962 19 AMPVALSGRD--LLGCAETGSGKTAAF 43 (433)
Q Consensus 19 ~i~~~~~~~~--~l~~~~TGsGKT~~~ 43 (433)
.+..+++|.+ ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4566677766 677899999999875
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.56 E-value=1.9 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
..+++.+++|||||.++-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999997643
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.55 E-value=2 Score=33.07 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
.-.+|.+|+|+|||.+
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3578999999999964
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.30 E-value=3.2 Score=33.28 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|++|||||.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456899999999999754
No 371
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=75.21 E-value=34 Score=33.58 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=57.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+.+.+... ++.+..++++....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l~-~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLR-EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCC-TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chhh-cCccCCC
Confidence 778999999999999888888774 67788888887765554432 3568999999 3333 3456777
Q ss_pred ccEEEEcccchh
Q 013962 138 VSFVILDEADRM 149 (433)
Q Consensus 138 ~~~vIiDE~h~~ 149 (433)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 899998777643
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.04 E-value=3.2 Score=32.96 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999764
No 373
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.00 E-value=3.1 Score=38.49 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=21.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
.+++.+++|+|||.++...+ ..+... .|.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA-~~l~~~------~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG-KFLREK------HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHT------SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHh------cCCeEEEEe
Confidence 46778999999997764433 333331 155566554
No 374
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.86 E-value=1.6 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+.+.|++|+|||.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 375
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.85 E-value=12 Score=33.66 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=56.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+..+++.+... +..+..++|+....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVLA-RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGGS-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-cCCCccc
Confidence 678999999999999888888774 67788899988766554433 3568899999 3333 3567778
Q ss_pred ccEEEEcccc
Q 013962 138 VSFVILDEAD 147 (433)
Q Consensus 138 ~~~vIiDE~h 147 (433)
+++||.-+.-
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 8998875544
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=74.80 E-value=3.8 Score=44.72 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=30.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 74 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L 74 (433)
.+..+++.+++|+|||..++..+...+.. +..++++......
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~--------G~~vlYI~te~~~ 74 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEHAL 74 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC--------CCceEEEEecCcc
Confidence 35689999999999998776655555433 6678888865443
No 377
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.76 E-value=2.3 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
..++++.||+|+|||.++- .+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~-~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997653 344443
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.64 E-value=3.6 Score=32.15 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.+++|||||.++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999754
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.23 E-value=1.4 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 380
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.11 E-value=3 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999754
No 381
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.07 E-value=3.2 Score=36.70 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=24.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
-+++.+..|.|||.++...+...... |.+++++-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS--------GKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC--------CCcEEEEeC
Confidence 36778999999998876555544332 677777764
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.04 E-value=1.9 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34899999999999753
No 383
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.91 E-value=23 Score=32.64 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=52.4
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCCcc
Q 013962 64 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVS 139 (433)
Q Consensus 64 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~ 139 (433)
.+||.|+++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ...++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~~-rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVAS-RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGGT-SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhhh-CCCCcccCC
Confidence 3999999999999888888763 67888999998766555443 3568999999 4333 356677888
Q ss_pred EEEE
Q 013962 140 FVIL 143 (433)
Q Consensus 140 ~vIi 143 (433)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 384
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=73.80 E-value=1.3 Score=37.06 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=11.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.|.-+.+.||+|+|||.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566688999999999964
No 385
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.77 E-value=1.8 Score=34.96 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|++|||||.++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999754
No 386
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=73.50 E-value=4.2 Score=33.44 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=21.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
++....+|.|||.+++..+.. +.+. |.+++++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~-la~~-------G~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQA-AKAA-------GYRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHH-HHHT-------TCCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC-------CCCEEEEcc
Confidence 345567899999876544433 3332 777888654
No 387
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.46 E-value=1.4 Score=36.52 Aligned_cols=19 Identities=32% Similarity=0.128 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+.-+.+.+|+|+|||..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999643
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=73.43 E-value=2.5 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.4
Q ss_pred EEEEcCCCChHHHHHH
Q 013962 29 LLGCAETGSGKTAAFT 44 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~ 44 (433)
+++.||+||||+..+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997653
No 389
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=73.39 E-value=2.1 Score=37.82 Aligned_cols=14 Identities=36% Similarity=0.259 Sum_probs=12.4
Q ss_pred cEEEEcCCCChHHH
Q 013962 28 DLLGCAETGSGKTA 41 (433)
Q Consensus 28 ~~l~~~~TGsGKT~ 41 (433)
-++|.|+.|+|||.
T Consensus 6 v~~i~G~~GaGKTT 19 (318)
T 1nij_A 6 VTLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEEESSSSSCHH
T ss_pred EEEEEecCCCCHHH
Confidence 37899999999996
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=73.35 E-value=1.8 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|+.|||||..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999754
No 391
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.32 E-value=4 Score=34.34 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|+.|||||..+
T Consensus 30 ~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 392
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.07 E-value=3.7 Score=33.78 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=42.6
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc-----ccCcccCC
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA-----SRGLDVMG 310 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidip~ 310 (433)
.+.++||.+|++..+..+.+.+... +..+..++|+.+..+.... +. ..+|+|+|. .+ ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3457999999999998888877653 6778888887665443332 22 378999994 21 23445556
Q ss_pred CcEEEE
Q 013962 311 VAHVVN 316 (433)
Q Consensus 311 ~~~Vi~ 316 (433)
+.+||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666664
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.07 E-value=2 Score=35.20 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=20.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q 013962 13 TSIQAQAMPVALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 13 ~~~Q~~~i~~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
++.++... .+..+..+++.|++|+|||..+
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHH
Confidence 44444442 2345566889999999999754
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=72.99 E-value=1.5 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=72.94 E-value=3.9 Score=33.66 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.77 E-value=3.4 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||.++
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 397
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.70 E-value=1.2 Score=36.41 Aligned_cols=19 Identities=26% Similarity=-0.013 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+.-+.+.|++|||||..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4456889999999999743
No 398
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=72.63 E-value=1.8 Score=35.45 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCChHHHH
Q 013962 26 GRDLLGCAETGSGKTAA 42 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~ 42 (433)
+.-+.|.||+|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999964
No 399
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.54 E-value=2.1 Score=37.68 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMI 48 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~ 48 (433)
.+..+++.+|+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345579999999999976654433
No 400
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.40 E-value=2.1 Score=37.41 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.|+.+.|.+|+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567789999999999963
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.39 E-value=2.7 Score=34.67 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013962 27 RDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~ 44 (433)
+-+++.||+||||+..+-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457889999999997653
No 402
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.39 E-value=19 Score=32.47 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=52.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
+.++||.|+++.-+...++.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~-~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLLT-RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCSS-SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Cccc-cCCCccC
Confidence 568999999999999988888875 57788888988766554433 3568899999 3322 3456677
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 403
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.35 E-value=1.8 Score=33.84 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.+++|||||.++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999754
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.30 E-value=6.8 Score=34.52 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHH
Q 013962 29 LLGCAETGSGKTAA 42 (433)
Q Consensus 29 ~l~~~~TGsGKT~~ 42 (433)
+.+.||+|||||..
T Consensus 95 igI~GpsGSGKSTl 108 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999964
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.23 E-value=2.3 Score=33.77 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
.-.+|.+|+|+|||.+
T Consensus 27 g~~~i~G~NGsGKStl 42 (182)
T 3kta_A 27 GFTAIVGANGSGKSNI 42 (182)
T ss_dssp SEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 3578999999999964
No 406
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=72.17 E-value=3.6 Score=36.46 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=23.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
-+++.+..|.|||.++...+...... |.+++++-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~--------G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKV--------RSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTS--------SSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC--------CCeEEEEE
Confidence 36778999999998776555444322 77787774
No 407
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.16 E-value=3.1 Score=46.13 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=34.1
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 79 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 79 (433)
+..+.++++.+|+|+|||..++..+.+...+ |.+++++.- .++.++.+
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECT-TSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEc-cccHHHHH
Confidence 4466789999999999998776655555433 777888875 44445454
No 408
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=72.11 E-value=2.7 Score=33.77 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred CCCccEEEEcccchhc--cCCCHHHHHHHHhhCCCCCcEEEEEeec
Q 013962 135 LSRVSFVILDEADRML--DMGFEPQIREVMQNLPDKHQTLLFSATM 178 (433)
Q Consensus 135 ~~~~~~vIiDE~h~~~--~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 178 (433)
..+.+++|+||+..+- +..+...+..++. ....+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---~~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---TPGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---CSSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh---CCCcEEEEEeec
Confidence 4668899999976553 2224444444444 333355556664
No 409
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.03 E-value=6.1 Score=33.25 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-ccc-----cCcccCCC
Q 013962 242 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VAS-----RGLDVMGV 311 (433)
Q Consensus 242 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~-----~Gidip~~ 311 (433)
+.++||.+|+++.+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 457999999999998888777654 56777888887655443322 34678999994 221 23466677
Q ss_pred cEEEEc
Q 013962 312 AHVVNL 317 (433)
Q Consensus 312 ~~Vi~~ 317 (433)
+++|.-
T Consensus 176 ~~lViD 181 (253)
T 1wrb_A 176 KYIVLD 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 777653
No 410
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=72.02 E-value=5.3 Score=35.74 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+++.+..|.|||.++...+...... |.+++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~--------G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK--------GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS--------SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC--------CCeEEEEe
Confidence 6778999999998876555444332 67777776
No 411
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.87 E-value=1.8 Score=35.15 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||.++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 412
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.78 E-value=3.4 Score=40.26 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013962 23 ALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 23 ~~~~~~~l~~~~TGsGKT~~~ 43 (433)
+..+..+++.+|+|+|||..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 346789999999999999754
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=71.72 E-value=1.7 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+.+.++.|||||.++
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445789999999999753
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.67 E-value=4.3 Score=33.77 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~ 44 (433)
+..+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999997643
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.52 E-value=1.8 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.135 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.+.|+.|||||.++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 416
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=71.49 E-value=1.5 Score=35.81 Aligned_cols=17 Identities=29% Similarity=0.067 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCChHHHH
Q 013962 26 GRDLLGCAETGSGKTAA 42 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~ 42 (433)
+.-+.|.||+|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 34578899999999964
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.49 E-value=2.5 Score=34.88 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 418
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.40 E-value=15 Score=33.39 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=53.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHh----hCCCcEEEeccHHHHHHHHcCCCCCCC
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 137 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 137 (433)
..++||.|+++.-+...++.+... ++.+..++|+....+....+ .+..+|+|+| +.+. ...++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~-~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWA-RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGS-SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chhh-CcCCccc
Confidence 568999999999999888888763 67788899988766554433 3578899999 3333 3566777
Q ss_pred ccEEEE
Q 013962 138 VSFVIL 143 (433)
Q Consensus 138 ~~~vIi 143 (433)
+++||.
T Consensus 345 v~~Vi~ 350 (410)
T 2j0s_A 345 VSLIIN 350 (410)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 419
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=70.90 E-value=5.3 Score=33.97 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 85 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 85 (433)
+..+++.+++|+|||..++..+...+.+ |.++++++-. +-..+..+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~--------Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKS--------DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHT--------TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHC--------CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 3457888788888884444444444433 7778887754 3344466666665
No 420
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.90 E-value=1.9 Score=36.74 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35789999999999754
No 421
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=70.86 E-value=2.5 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||..+
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3688999999999754
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.84 E-value=3.2 Score=45.26 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 78 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 78 (433)
|+.+.+.+|.|||||..++..+.+. ... +..++++.+-.+|-..+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~-~~~-------g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA-QRE-------GKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HHT-------TCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-Hhc-------CCeEEEEecCCCCCHHH
Confidence 3569999999999998776555444 332 88899999987776654
No 423
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=70.81 E-value=2 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|+.|||||..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 345889999999999754
No 424
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=70.81 E-value=1.9 Score=36.18 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678999999999996
No 425
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=70.80 E-value=4.4 Score=39.31 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 27 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+-+++.+..|.|||.++...+...... |.+++++.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~--------G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ--------GKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC--------CCcEEEEE
Confidence 457889999999998876655554433 66777765
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=70.61 E-value=2.3 Score=33.61 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAFT 44 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~ 44 (433)
.+.-+++.++.|+|||.+++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 45679999999999997654
No 427
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=70.59 E-value=3 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-++|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999653
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.45 E-value=1.6 Score=34.60 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=10.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|+.|||||.++
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.21 E-value=3.8 Score=39.07 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 25 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
.|..++|.+++|+|||.... .++..... .+.+++++++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~-~l~g~~~~-------~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVS-RFVENACA-------NKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHH-HHHHHHHT-------TTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHh-------CCCCEEEEEEeC
Confidence 45678999999999996543 33333222 155577776643
No 430
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.20 E-value=2 Score=34.40 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+++.|+.|||||..+
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 431
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=70.15 E-value=2.7 Score=34.78 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+.+.|++|||||.++
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.99 E-value=2 Score=34.95 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.|.|++|||||.++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999743
No 433
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=69.93 E-value=4.7 Score=34.26 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
.+.....|.|||.++...+...... |.+++++=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~--------G~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQ--------GKKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHC--------CCeEEEEe
Confidence 3456788999998765544433322 66777753
No 434
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=69.91 E-value=1.8 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.221 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.|.+++|||||..+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999643
No 435
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=69.91 E-value=8.4 Score=37.96 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=48.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 141 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 141 (433)
+.++||.||++.-++..++.+... ++.+..++|............+..+|+|+| +.+.. ..++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 678999999999999888877763 678888888533222222234678999999 44444 34555 7776
Q ss_pred E
Q 013962 142 I 142 (433)
Q Consensus 142 I 142 (433)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 436
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.84 E-value=2.1 Score=34.95 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013962 25 SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..+++.|+.|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3456899999999999754
No 437
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.43 E-value=2.2 Score=34.32 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+++.|+.|||||.++
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999754
No 438
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=69.38 E-value=4.9 Score=33.40 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+.....|.|||.++...+... .+. +.+++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~l-a~~-------g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVAL-GDR-------GRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHH-HHT-------TCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHH-Hhc-------CCeEEEEe
Confidence 456788999998765544333 232 66777764
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.17 E-value=4.9 Score=32.96 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
..+++.|++|||||..+
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 440
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=69.15 E-value=24 Score=35.38 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=55.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhc------cCCCceEEEEECCCCHHHHHHHhh---------CCCcEEEeccHHHHH
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSR------SLDSFKTAIVVGGTNIAEQRSELR---------GGVSIVVATPGRFLD 126 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ivv~T~~~l~~ 126 (433)
++.+||.+|++.-+.+.++.+..... ...++.+..++|+....++...+. +..+|+|+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 67899999999999999888876332 225788999999988777665442 345799999 4
Q ss_pred HHHcCCCCCCCccEEEE
Q 013962 127 HLQQGNTSLSRVSFVIL 143 (433)
Q Consensus 127 ~~~~~~~~~~~~~~vIi 143 (433)
.+.. ..++.++.+||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4443 355677777763
No 441
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.06 E-value=2.2 Score=35.87 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678999999999996
No 442
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=69.03 E-value=7.2 Score=36.03 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=47.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 141 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 141 (433)
+.+++|+||++.-++..++.+... ++.+..++|+...........+..+|+|+| +.+..+ .++. ...|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~G-iDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEMG-ANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGTS-CCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHcC-cccC-CcEE
Confidence 557999999999999988888874 677888888744333333345678999999 555543 4444 4454
No 443
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=68.98 E-value=5.4 Score=33.77 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
.+.....|.|||.++...+.... +. |.+++++=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la-~~-------g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALA-QL-------GHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHH-HT-------TCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-hC-------CCcEEEEE
Confidence 35578899999987655443332 32 66777764
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.82 E-value=5 Score=33.15 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+++.|++|||||..+
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999754
No 445
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=68.81 E-value=2.1 Score=35.04 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
+++.|+.|||||..+ -.+...+
T Consensus 3 I~i~G~~GsGKsTl~-~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV-EKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHH-HHHHHHH
T ss_pred EEEEcCCCCCHHHHH-HHHHHHH
Confidence 678999999999643 3343433
No 446
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.74 E-value=2.4 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHH
Q 013962 26 GRDLLGCAETGSGKTAA 42 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~ 42 (433)
+..+.+.||.|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999964
No 447
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.64 E-value=2.5 Score=34.87 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|+|||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999996
No 448
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.58 E-value=2.3 Score=34.71 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+++.|+.|||||.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 449
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.39 E-value=6.7 Score=39.35 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++++.||||+|||.++- .+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~-ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR-ALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 49999999999998653 333433
No 450
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=68.36 E-value=1.7 Score=36.95 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||..+
T Consensus 34 ~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEESCGGGTTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999754
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.33 E-value=2.8 Score=34.37 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+++.|++|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 452
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.32 E-value=3.4 Score=37.73 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 72 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~ 72 (433)
+.-+.|.+|+|+|||..+...++..+... ...+.+..++++....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~--~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPL--DIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCc--ccCCCCCcEEEEeCCC
Confidence 45689999999999975433222222110 0001245677776543
No 453
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=67.86 E-value=29 Score=31.98 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEEC--------CCCHHHH
Q 013962 35 TGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVG--------GTNIAEQ 106 (433)
Q Consensus 35 TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 106 (433)
..++|... +..++....... .+.++||.++++.-+...++.+... ++.+..+.| +....+.
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~-----~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r 408 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRK-----QNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQ 408 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHC-----TTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHH
T ss_pred CCChHHHH-HHHHHHHHhccC-----CCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHH
Confidence 55677753 444554443211 2778999999999988888888774 677888888 4433322
Q ss_pred HHH----hhCCCcEEEeccHHHHHHHHcCCCCCCCccEEEEcccc
Q 013962 107 RSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 147 (433)
Q Consensus 107 ~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE~h 147 (433)
... ..+..+|+|+| +.+. ...++...++||+-+..
T Consensus 409 ~~~~~~F~~~~~~vLv~T-----~~~~-~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 409 KLILDEFARGEFNVLVAT-----SVGE-EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHHHHHTSCSEEEEC-----GGGG-GGGGSTTCCEEEESSCC
T ss_pred HHHHHHHhcCCceEEEEC-----Cccc-cCCCchhCCEEEEeCCC
Confidence 222 23568899999 2222 24556778888864433
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=67.79 E-value=3.5 Score=37.31 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHH
Q 013962 27 RDLLGCAETGSGKTAA 42 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~ 42 (433)
.-.++.|+||+|||.+
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4579999999999975
No 455
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=67.35 E-value=2.2 Score=37.39 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.|+.+.|.+|+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466789999999999963
No 456
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=67.34 E-value=10 Score=35.17 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=48.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCCceEEEEECCCCHHHHHHHhhCCCcEEEeccHHHHHHHHcCCCCCCCccEE
Q 013962 62 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 141 (433)
Q Consensus 62 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~v 141 (433)
+.++||.||++.-++++++.+... ++.+..+++............+..+|+|+| +.+.. ..++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 557999999999999888887763 677777777665333333334678999999 55444 345565 666
Q ss_pred E
Q 013962 142 I 142 (433)
Q Consensus 142 I 142 (433)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 6
No 457
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=67.29 E-value=5.6 Score=33.58 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEE
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl 68 (433)
.+.....|.|||.++...+.... +. |.+++++
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la-~~-------g~~Vlli 37 (260)
T 3q9l_A 6 VVTSGKGGVGKTTSSAAIATGLA-QK-------GKKTVVI 37 (260)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHH-HT-------TCCEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHH-hC-------CCcEEEE
Confidence 35577889999987655444433 22 6667765
No 458
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=67.19 E-value=5.6 Score=33.63 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=21.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
-+++.+..|+|||..+. .+...+. . +.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~-~La~~l~-~-------g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTG-EFGRYLE-D-------NYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHT-T-------TSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHH-HHHHHHH-C-------CCeEEEEe
Confidence 37889999999997543 3333333 2 55666665
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.19 E-value=6 Score=31.84 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+.+.|++|||||.++
T Consensus 15 IgltG~~GSGKSTva 29 (192)
T 2grj_A 15 IGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999764
No 460
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=67.14 E-value=17 Score=32.98 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=22.1
Q ss_pred HHHHHHHHHhh---cCCcEEEEcCCCChHHHHH
Q 013962 14 SIQAQAMPVAL---SGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 14 ~~Q~~~i~~~~---~~~~~l~~~~TGsGKT~~~ 43 (433)
..=..++..+. .|+.+.|.+|+|+|||..+
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 33344555544 6889999999999999754
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=67.02 E-value=4.2 Score=33.06 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChHHHH
Q 013962 26 GRDLLGCAETGSGKTAA 42 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~ 42 (433)
..-.+|.+|+|+|||.+
T Consensus 23 ~~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSL 39 (203)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CCeEEEEcCCCCCHHHH
Confidence 34578999999999964
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=66.99 E-value=4.9 Score=32.46 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+....-|.|||.++...+.... .. |.+++++=
T Consensus 6 v~s~kgG~GKTt~a~~la~~la-~~-------g~~vlliD 37 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALS-RS-------GYNIAVVD 37 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHH-HT-------TCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHH-HC-------CCeEEEEE
Confidence 3456788999987655444433 22 66676664
No 463
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.90 E-value=2.4 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.|.+|.|+|||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678999999999996
No 464
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.83 E-value=3.2 Score=33.53 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.|.+++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 465
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=66.77 E-value=5.3 Score=35.46 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=24.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcC
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 70 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P 70 (433)
-+++.+.-|.|||.++...+...... |.+++++--
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~--------g~~vllid~ 52 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKV--------RRSVLLLST 52 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTS--------SSCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhC--------CCcEEEEEC
Confidence 47778999999998776555444322 667777663
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=66.60 E-value=4.1 Score=40.92 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
..++++.||+|+|||.++ -.+...+
T Consensus 201 ~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999765 3344443
No 467
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.25 E-value=2.6 Score=35.65 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|+|||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999996
No 468
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.20 E-value=2.7 Score=35.08 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+.+.+.+|.|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999996
No 469
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.86 E-value=2.7 Score=35.84 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+.+.+.+|.|+|||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778999999999996
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.83 E-value=3.9 Score=34.57 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013962 26 GRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 26 ~~~~l~~~~TGsGKT~~~ 43 (433)
+..+.|.+|+|||||.++
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999743
No 471
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=65.49 E-value=5.1 Score=32.50 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=21.6
Q ss_pred ccEEEEcccchhccCC-----CHHHHHHHHhhCCCCCcEEEEEee
Q 013962 138 VSFVILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSAT 177 (433)
Q Consensus 138 ~~~vIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SAT 177 (433)
-.+|||||||.+.... ....+..+........+++++|-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999984321 112222222222334566666666
No 472
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=65.43 E-value=18 Score=29.14 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCCeEEEEEeccccHHH-HHHHHHH---CCCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 013962 241 PFPLTIVFVERKTRCDE-VSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVATD 300 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~-l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 300 (433)
...++||+||++..+.. +.+.+.. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 45679999999988776 5555443 3677888888654433221111 1467999994
No 473
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=65.42 E-value=2.7 Score=35.96 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|+|||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999996
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.34 E-value=5.5 Score=37.96 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=20.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 013962 24 LSGRDLLGCAETGSGKTAAFTIPMIQHCVA 53 (433)
Q Consensus 24 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 53 (433)
..|..+.|.+|+|+|||..+...++.-+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 356779999999999997554433444443
No 475
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.33 E-value=2.6 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=0.0
Q ss_pred HhhcCCcEEEEcCCCChHHHHH
Q 013962 22 VALSGRDLLGCAETGSGKTAAF 43 (433)
Q Consensus 22 ~~~~~~~~l~~~~TGsGKT~~~ 43 (433)
.+..++.+++.||||+|||..+
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHCCCeEEEECCCCCCHHHHH
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.26 E-value=3 Score=34.31 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.+.|+.|||||.++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 477
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.15 E-value=2.6 Score=35.00 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+-+.+.+|.|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999996
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=65.11 E-value=7 Score=34.02 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=20.5
Q ss_pred EEEEc-CCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEc
Q 013962 29 LLGCA-ETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 69 (433)
Q Consensus 29 ~l~~~-~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~ 69 (433)
+++.+ ..|.|||.++...+...... |.+|++|=
T Consensus 107 I~vts~kgG~GKTtva~nLA~~lA~~--------G~rVLLID 140 (299)
T 3cio_A 107 LMITGATPDSGKTFVSSTLAAVIAQS--------DQKVLFID 140 (299)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHT--------TCCEEEEE
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhC--------CCcEEEEE
Confidence 44444 47999998776544444322 67777763
No 479
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=65.09 E-value=3.8 Score=35.56 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q 013962 29 LLGCAETGSGKTAAF 43 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~ 43 (433)
+.|.|++|||||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999654
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=65.06 E-value=5.8 Score=33.16 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEE
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl 68 (433)
+.+.+.-|.|||.++...+.... + .|.+|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la-~-------~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA-S-------DYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT-T-------TCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHH-H-------CCCeEEEE
Confidence 34478999999987655444332 2 16667666
No 481
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=64.95 E-value=6.7 Score=33.60 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEE-cCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEE
Q 013962 29 LLGC-AETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68 (433)
Q Consensus 29 ~l~~-~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl 68 (433)
+++. ...|.|||.++...+...... |.+|++|
T Consensus 85 I~vts~kgG~GKTt~a~nLA~~lA~~--------G~rVLLI 117 (271)
T 3bfv_A 85 IVITSEAPGAGKSTIAANLAVAYAQA--------GYKTLIV 117 (271)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT--------TCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC--------CCeEEEE
Confidence 4444 457999998776544444322 6677766
No 482
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.77 E-value=4.8 Score=33.67 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCCeEEEEEeccccHHHHHHHHHHC----CCceeeecCCCCHHHHHHHHHHHhcCCCcEEEEec-cc----cc---Cccc
Q 013962 241 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVATD-VA----SR---GLDV 308 (433)
Q Consensus 241 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~---Gidi 308 (433)
.+.++||.+|+++.+..+.+.+... +..+..++++.... ........+..+|+|+|+ .+ .. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4457999999999999988888765 55566655432111 111122245678999993 11 12 4666
Q ss_pred CCCcEEEEcc
Q 013962 309 MGVAHVVNLD 318 (433)
Q Consensus 309 p~~~~Vi~~~ 318 (433)
.++.++|.-+
T Consensus 174 ~~~~~lViDE 183 (245)
T 3dkp_A 174 ASVEWLVVDE 183 (245)
T ss_dssp TTCCEEEESS
T ss_pred ccCcEEEEeC
Confidence 7777766543
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.69 E-value=4.9 Score=40.99 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=17.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
++++.||||+|||.++ -.+...+
T Consensus 590 ~vLl~Gp~GtGKT~lA-~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA-KTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 6899999999999765 3344433
No 484
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=64.56 E-value=7.4 Score=34.78 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+.+.|++|+|||.. +-.+...+
T Consensus 76 ~v~lvG~pgaGKSTL-ln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTF-IEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHH-HHHHHHHh
Confidence 478999999999953 44444443
No 485
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=64.43 E-value=6.1 Score=35.43 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEcCc
Q 013962 29 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 71 (433)
Q Consensus 29 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl~P~ 71 (433)
+++.+..|.|||.++...++...... .|.+++++-.-
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~------~G~rVLLvD~D 57 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQ------PNKQFLLISTD 57 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECC
Confidence 67789999999988765555443101 17778877643
No 486
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.38 E-value=6.6 Score=34.90 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013962 25 SGRDLLGCAETGSGKTAA 42 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~~ 42 (433)
.+..+.+.|++|+|||..
T Consensus 54 ~g~~v~i~G~~GaGKSTL 71 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTT 71 (337)
T ss_dssp CSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999953
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.36 E-value=7 Score=35.00 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHH
Q 013962 28 DLLGCAETGSGKTAAFTIPMIQHC 51 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~~~~~~~~~ 51 (433)
.+.+.+++|+|||..+ ..+...+
T Consensus 81 ~I~i~G~~G~GKSTl~-~~L~~~l 103 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI-EALGMHL 103 (355)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH
Confidence 4888999999999654 3344433
No 488
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=64.35 E-value=2.9 Score=35.54 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.+.||.|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999996
No 489
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.03 E-value=3 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.+.+|.|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56678899999999996
No 490
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.01 E-value=3.1 Score=35.48 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.+.||.|+|||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45678899999999996
No 491
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.01 E-value=2.6 Score=35.49 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|+.+.+.+|.|+|||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45678999999999996
No 492
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.92 E-value=3.2 Score=35.30 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.+.+|.|+|||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46678899999999996
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=63.88 E-value=3.2 Score=35.58 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|.-+.+.+|.|+|||.
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999996
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.67 E-value=3 Score=39.36 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHH
Q 013962 27 RDLLGCAETGSGKTAAF 43 (433)
Q Consensus 27 ~~~l~~~~TGsGKT~~~ 43 (433)
+.+++.+|+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999754
No 495
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=63.55 E-value=5.4 Score=28.26 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 276 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 276 (433)
.+..++++||.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3456799999998888999999999999888887764
No 496
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=63.46 E-value=3.3 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
.+.|.|++|||||.++
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 497
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=63.42 E-value=7.7 Score=33.52 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=20.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEE
Q 013962 30 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 68 (433)
Q Consensus 30 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~lvl 68 (433)
+..+..|.|||.++...+...... |.+|++|
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~--------G~rVLLI 127 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQT--------NKRVLLI 127 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTT--------TCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC--------CCCEEEE
Confidence 445667999998876544444322 6677776
No 498
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=63.20 E-value=5.4 Score=28.07 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCCCeEEEEEeccccHHHHHHHHHHCCCceeeecCCC
Q 013962 240 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGR 276 (433)
Q Consensus 240 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 276 (433)
.+..++++||.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3456799999998889999999999999888888864
No 499
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=63.17 E-value=3.3 Score=35.05 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 013962 25 SGRDLLGCAETGSGKTA 41 (433)
Q Consensus 25 ~~~~~l~~~~TGsGKT~ 41 (433)
.|..+.+.+|.|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56678899999999996
No 500
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=63.13 E-value=3.3 Score=36.02 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 013962 28 DLLGCAETGSGKTAAF 43 (433)
Q Consensus 28 ~~l~~~~TGsGKT~~~ 43 (433)
-+++.|++|||||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
Done!