BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013964
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 33/204 (16%)
Query: 211 TDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLE-----------K 259
T L++LRA + ++D I T+ WR++FGI + L E+ GD + K
Sbjct: 86 TRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI-SHLGEEHGDKITADLVAVENESGK 144
Query: 260 VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRP 319
V + G++ D P+ Y G QN KT + + + F+ LER I +F P
Sbjct: 145 QVIL-GYENDARPILYLKPGR-QN----TKTSHRQVQHLVFM------LERVI---DFMP 189
Query: 320 GGVSTIFQVNDLKNSPG----PGKRELRI--ATKQALQLLQDNYPEFVAKQVFINVPWWY 373
G ++ + D K+ P PG ++ K+ L +LQ +YPE + K + N+PW
Sbjct: 190 AGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLA 249
Query: 374 LAFHTMISPFMTQRTKSKFVFAGP 397
F +I PF+ T+ K VF P
Sbjct: 250 WTFLKLIHPFIDPLTREKLVFDEP 273
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV------FMHG 265
D LL+FLRAR F V+ A M +N +WRKD+G + +L +D D + ++ + H
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHK 110
Query: 266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG--VS 323
D+DG PV + G ++ + EE+ +K L W + + + R G V
Sbjct: 111 TDKDGRPVYFEELGAVNLHEM--NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVE 168
Query: 324 TIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPF 383
T + DLK + ++A + Q+ YPE + K IN P+ + + PF
Sbjct: 169 TSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 228
Query: 384 MTQRTKSKFVFAGPSKSTETL 404
+ T SK G S E L
Sbjct: 229 LDPVTVSKIFILGSSYQKELL 249
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG----IEALLNEDLGDDLEKV-- 260
K+ D LL+FLRAR F + + M T +WR+++G IE N +D E++
Sbjct: 56 KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKL 115
Query: 261 -----VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRM---------KFLRWRIQ 306
+ H D+DG P+ + G K++Y T EK+M F +R+
Sbjct: 116 AKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKIT---TEKQMLRNLVKEYELFATYRVP 172
Query: 307 FLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVF 366
R L + T V DLK + K + Q+ YPE + K
Sbjct: 173 ACSRRAGYL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYI 226
Query: 367 INVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILY 418
I+ P+ + M+ PF+ T SK G S E L ++ I +LP+ Y
Sbjct: 227 IHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIP--IENLPVKY 276
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG----IEALLNEDLGDDLEKV-- 260
K+ D LL+FLRAR F + + M T +WR+++G IE N +D E++
Sbjct: 56 KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKL 115
Query: 261 -----VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRM---------KFLRWRIQ 306
+ H D+DG P+ + G K++Y T EK+M F +R+
Sbjct: 116 AKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT---TEKQMLRNLVKEYELFATYRVP 172
Query: 307 FLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVF 366
R L + T V DLK + K + Q+ YPE + K
Sbjct: 173 ACSRRAGYL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYI 226
Query: 367 INVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILY 418
I+ P+ + M+ PF+ T SK G S E L ++ I +LP+ Y
Sbjct: 227 IHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIP--IENLPVKY 276
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 15/206 (7%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + M++ +++RK I+ +++ + +++ + M G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDE--EKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQ 327
G PV Y++ G K L + +M+ +Q KL + V TI
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRK---VETITI 151
Query: 328 VNDLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPF 383
+ D + G G + L +A L + ++NYPE + + + P + + +I PF
Sbjct: 152 IYDCE---GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF 208
Query: 384 MTQRTKSKFVFAGPSKSTETLFKLVN 409
+++ T+ K + G + E L K ++
Sbjct: 209 LSEDTRKKIMVLG-ANWKEVLLKHIS 233
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 15/206 (7%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + M++ +++RK I+ +++ + +++ + M G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDE--EKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQ 327
G PV Y++ G K L + +M+ +Q KL + V TI
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRK---VETITI 151
Query: 328 VNDLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPF 383
+ D + G G + L +A L + ++NYPE + + + P + + +I PF
Sbjct: 152 IYDCE---GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF 208
Query: 384 MTQRTKSKFVFAGPSKSTETLFKLVN 409
+++ T+ K + G + E L K ++
Sbjct: 209 LSEDTRKKIMVLG-ANWKEVLLKHIS 233
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 19/201 (9%)
Query: 202 GVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-IEALLNEDLGDDLEKV 260
GVPL TD LL+FLRARDF + A+ ++KN +WR + I A L+ L K
Sbjct: 39 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 98
Query: 261 VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFL--ERSIRKLNFR 318
+ HG R P V +Y D + + +R+ + E ++++ +
Sbjct: 99 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 150
Query: 319 PGGVSTIFQVNDLKNSPGPGKRELRI---ATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
G+ IF + + S +I K+ +L D++P V IN P + A
Sbjct: 151 RNGIKAIFDLEGWQFS-----HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHA 205
Query: 376 FHTMISPFMTQRTKSKFVFAG 396
+MI PF+T++ K + G
Sbjct: 206 VFSMIKPFLTEKIKERIHMHG 226
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 11/204 (5%)
Query: 212 DVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV--FMHGFDRD 269
D LL++LRAR F ++ + ++ +++RK I+ +++ + +++ + G+D D
Sbjct: 35 DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGYDLD 94
Query: 270 GHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVN 329
G PV Y++ G K L + R K + L+ + V TI +
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 330 DLKNSPGPGKRELRIATKQA----LQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMT 385
D + G G + L +A L ++NYPE + + + P + + +I PF++
Sbjct: 154 DCE---GLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLS 210
Query: 386 QRTKSKFVFAGPSKSTETLFKLVN 409
+ T+ K G + E L K ++
Sbjct: 211 EDTRKKIXVLG-ANWKEVLLKHIS 233
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 202 GVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-IEALLNEDLGDDLEKV 260
GVPL TD LL+FLRARDF + A+ ++KN +WR + I A L+ L K
Sbjct: 23 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 82
Query: 261 VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFL--ERSIRKLNFR 318
+ HG R P V +Y D + + +R+ + E ++++ +
Sbjct: 83 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 134
Query: 319 PGGVSTIFQVNDLKNSPGPGKRELRI---ATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
G+ IF + + S +I K+ +L D++P V IN P + A
Sbjct: 135 RNGIKAIFDLEGWQFS-----HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHA 189
Query: 376 FHTMISPFMTQRTKSKFVFAG 396
+ I PF+T++ K + G
Sbjct: 190 VFSXIKPFLTEKIKERIHXHG 210
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 214 ILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGF------- 266
L+F+RAR F V A+ +++ + +R + L + L + + G+
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQY---PELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 267 DRDGHPV-CYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTI 325
D+ G V +N+ +N Q TF + + F+ LE+ + + G I
Sbjct: 151 DKYGRVVXLFNI----ENWQSQEITFDEILQAYCFI------LEKLLENEETQINGFCII 200
Query: 326 FQVNDLKNSPGPGKRELRIA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFM 384
+ K LR + ++ + LQD++P + FI+ PW++ + ++ PF+
Sbjct: 201 ---ENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFL 257
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 214 ILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGF------- 266
L+F+RAR F V A+ +++ + +R + L + L + + G+
Sbjct: 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQY---PELFDSLSPEAVRCTIEAGYPGVLSSR 150
Query: 267 DRDGHPV-CYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTI 325
D+ G V +N+ +N Q TF + + F+ ++ LE ++N G I
Sbjct: 151 DKYGRVVMLFNI----ENWQSQEITFDEILQAYCFILEKL--LENEETQIN----GFCII 200
Query: 326 FQVNDLKNSPGPGKRELRIA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFM 384
+ K LR + ++ + +LQD++P FI+ PW++ + ++ PF+
Sbjct: 201 ---ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFL 257
Query: 385 TQRTKSKFVFAG 396
+ + G
Sbjct: 258 KSKLLERVFVHG 269
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 218 FLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVF----------MHGFD 267
L +DF R A KN I + GI ++NE+ +E++VF H FD
Sbjct: 95 LLTGKDFDSRKATKHAKNAIDXXINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFD 154
Query: 268 RDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN-FRPGGVST 324
D + ++ G F +K FSD ++ K + ++L+ +I+ + GG+ T
Sbjct: 155 ADLLVILSDIDG-FYDKN--PSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVT 209
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 34/137 (24%)
Query: 252 DLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERS 311
D GDD+ V G++ V Y + G+ Y KT ++K K + R+Q L +
Sbjct: 191 DFGDDVYFVADQRGYE----AVVYYLAGQ------YLKT---DDKSGKIVDPRLQ-LNKV 236
Query: 312 IRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPW 371
+R++ + PGGV+ + N + ++ + +L +LQ + +F K +P
Sbjct: 237 VREIKYSPGGVTVKTEDNSVYSAD-------YVMVSASLGVLQSDLIQFKPK-----LPT 284
Query: 372 WY--------LAFHTMI 380
W +A +TMI
Sbjct: 285 WKVRAIYQFDMAVYTMI 301
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 252 DLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERS 311
D GDD+ V G++ V Y + G+ Y KT ++K K + R+Q L +
Sbjct: 191 DFGDDVYFVADQRGYE----AVVYYLAGQ------YLKT---DDKSGKIVDPRLQ-LNKV 236
Query: 312 IRKLNFRPGGVST 324
+R++ + PGGV+
Sbjct: 237 VREIKYSPGGVTV 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,298
Number of Sequences: 62578
Number of extensions: 346203
Number of successful extensions: 873
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 21
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)