Query 013964
Match_columns 433
No_of_seqs 262 out of 1206
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.5E-47 5.3E-52 383.3 18.6 244 104-425 24-283 (320)
2 1aua_A Phosphatidylinositol tr 100.0 4E-47 1.4E-51 374.0 21.1 245 104-426 15-269 (296)
3 1olm_A SEC14-like protein 2; l 100.0 4.6E-47 1.6E-51 389.2 21.8 241 109-427 2-250 (403)
4 1r5l_A Alpha-TTP, protein (alp 100.0 7.5E-44 2.6E-48 343.1 16.6 199 208-424 29-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 1.7E-42 5.7E-47 345.9 15.3 204 208-430 88-299 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.0 3E-10 1E-14 110.2 7.9 133 259-414 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 2.4E-09 8.2E-14 105.6 5.1 132 259-413 30-162 (290)
8 1ufz_A Hypothetical protein BA 54.8 54 0.0019 26.0 7.7 29 208-236 47-75 (83)
9 1wgl_A TOLL-interacting protei 50.9 16 0.00054 27.1 3.8 28 208-235 21-48 (59)
10 2dal_A Protein KIAA0794; FAS a 49.2 62 0.0021 23.8 7.0 24 211-234 29-52 (62)
11 2dam_A ETEA protein; KIAA0887, 42.2 80 0.0027 23.7 6.7 25 211-235 33-57 (67)
12 2q3l_A Uncharacterized protein 41.2 89 0.0031 25.9 7.6 93 267-386 16-110 (126)
13 2dhy_A CUE domain-containing p 31.8 51 0.0018 25.0 4.1 29 208-236 30-58 (67)
14 1otr_A Protein CUE2; protein-p 31.6 44 0.0015 23.8 3.5 29 208-236 16-44 (49)
15 1z96_A DNA-damage, UBA-domain 29.1 60 0.0021 21.1 3.7 23 211-233 17-39 (40)
16 3sbx_A Putative uncharacterize 27.8 81 0.0028 28.5 5.4 58 348-410 127-189 (189)
17 1v92_A NSFL1 cofactor P47; 3-h 26.8 49 0.0017 22.4 2.9 23 211-233 19-41 (46)
18 2di0_A Activating signal coint 26.5 66 0.0023 24.8 3.9 28 208-235 25-52 (71)
19 2dah_A Ubiquilin-3; UBA domain 24.0 86 0.0029 22.5 3.9 26 211-236 23-48 (54)
20 2knz_A Ubiquilin-4; cytoplasm, 23.7 63 0.0022 23.0 3.2 26 211-236 25-50 (53)
21 2dna_A Unnamed protein product 23.2 74 0.0025 24.2 3.5 27 210-236 32-58 (67)
22 1wr1_B Ubiquitin-like protein 23.0 69 0.0023 23.5 3.3 26 211-236 31-56 (58)
23 2bwb_A Ubiquitin-like protein 21.7 81 0.0028 21.8 3.3 24 211-234 21-44 (46)
24 1q02_A Sequestosome 1; helical 21.5 75 0.0026 23.0 3.1 24 211-234 25-48 (52)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.5e-47 Score=383.27 Aligned_cols=244 Identities=25% Similarity=0.384 Sum_probs=204.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCC
Q 013964 104 SFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPA 183 (433)
Q Consensus 104 s~~~~s~~~~~L~~~q~~aL~efr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (433)
+....+|++|+||+.|+++|++||+.|++..
T Consensus 24 ~~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~------------------------------------------------- 54 (320)
T 3q8g_A 24 SPNALPGTPGNLTKEQEEALLQFRSILLEKN------------------------------------------------- 54 (320)
T ss_dssp CTTSCTTSTTCCCHHHHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 3455799999999999999999999998651
Q ss_pred CCCCCCCCCCCccchhhcCCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCccCccchhh--------
Q 013964 184 EVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGD-------- 255 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~wgvpll~~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~iD~i~~e~~~~-------- 255 (433)
+....||.+||||||||+|||++|.+||+++++||+++++|.+..+...+
T Consensus 55 ----------------------~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~ 112 (320)
T 3q8g_A 55 ----------------------YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKER 112 (320)
T ss_dssp ----------------------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHH
T ss_pred ----------------------CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHH
Confidence 11356899999999999999999999999999999999999877543211
Q ss_pred -hccc--eEeeeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHh----c-cCCCCeeEEEE
Q 013964 256 -DLEK--VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL----N-FRPGGVSTIFQ 327 (433)
Q Consensus 256 -el~~--~~~~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l----~-~~~~~i~~itv 327 (433)
.+.+ ..|++|+|++||||+|+++|++|.+++++.+ +.+++++++++.+|++++.. . .....++++++
T Consensus 113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~ 187 (320)
T 3q8g_A 113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCT 187 (320)
T ss_dssp HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEE
Confidence 2222 3578999999999999999999999887654 35788999999999987521 1 11235788999
Q ss_pred EeeCCCCCCCCchhHHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhh
Q 013964 328 VNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKL 407 (433)
Q Consensus 328 IiDlkg~sgls~~~L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~ 407 (433)
|+||+|++..++.++...++.++.++|+|||+||+++||||+|++|.++|++|||||+++|++||+|+++ ++.+.|.+|
T Consensus 188 IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~ 266 (320)
T 3q8g_A 188 VLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQ 266 (320)
T ss_dssp EEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhh
Confidence 9999976422222224678999999999999999999999999999999999999999999999999986 467899999
Q ss_pred CCCCCCCcccCCCCcCCC
Q 013964 408 VNIILSLPILYVVALLFG 425 (433)
Q Consensus 408 Id~~e~LP~eyGGt~~~~ 425 (433)
|++ ++||.+|||+++|.
T Consensus 267 i~~-~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 267 IPI-ENLPVKYGGTSVLH 283 (320)
T ss_dssp SCG-GGSBGGGTSCBCCS
T ss_pred CCh-hhCChhhCCCCCCC
Confidence 999 99999999999984
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4e-47 Score=374.03 Aligned_cols=245 Identities=25% Similarity=0.346 Sum_probs=205.1
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCC
Q 013964 104 SFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPA 183 (433)
Q Consensus 104 s~~~~s~~~~~L~~~q~~aL~efr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (433)
+....+|++++|++.|+++|++||+.|++..
T Consensus 15 ~~~~~~~~~~~l~~~q~~~l~~lr~~l~~~~------------------------------------------------- 45 (296)
T 1aua_A 15 PPDALPGTPGNLDSAQEKALAELRKLLEDAG------------------------------------------------- 45 (296)
T ss_dssp CTTSCTTSTTTCCTTHHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred CcccCCCCCCCCCHHHHHHHHHHHHHHHhcC-------------------------------------------------
Confidence 4446899999999999999999999998641
Q ss_pred CCCCCCCCCCCccchhhcCCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCccCccchh---hhccce
Q 013964 184 EVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLG---DDLEKV 260 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~wgvpll~~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~iD~i~~e~~~---~el~~~ 260 (433)
+....||.+||||||||+||+++|.+||+++++||+.++++.+...... +.+.+.
T Consensus 46 ----------------------~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 46 ----------------------FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp ----------------------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred ----------------------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 1245689999999999999999999999999999999998887654321 223332
Q ss_pred --EeeeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCeeEEEEEeeCCC
Q 013964 261 --VFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN-----FRPGGVSTIFQVNDLKN 333 (433)
Q Consensus 261 --~~~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~-----~~~~~i~~itvIiDlkg 333 (433)
.+++|+|++||||+|+++|++|++++++.. +.+++++++++.+|.+++.+. .....++++++|+||+|
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVT-----SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 368999999999999999999998876543 367899999999999876421 11245889999999997
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCC
Q 013964 334 SPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILS 413 (433)
Q Consensus 334 ~sgls~~~L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~ 413 (433)
++..++..+..+++.++.++|+|||+||+++||||+||+|.++|++|||||+++|++||+|+++ ++.+.|.+||++ ++
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~-~~ 256 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPA-EN 256 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCS-SS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCH-hh
Confidence 6432222334678999999999999999999999999999999999999999999999999986 578999999999 99
Q ss_pred CcccCCCCcCCCC
Q 013964 414 LPILYVVALLFGW 426 (433)
Q Consensus 414 LP~eyGGt~~~~~ 426 (433)
||.+|||+++|.-
T Consensus 257 LP~~yGG~~~~~~ 269 (296)
T 1aua_A 257 LPVKFGGKSEVDE 269 (296)
T ss_dssp SBGGGTSCBCCCG
T ss_pred CcHHhCCCCCCCC
Confidence 9999999998764
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4.6e-47 Score=389.17 Aligned_cols=241 Identities=24% Similarity=0.379 Sum_probs=206.2
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCCCCCCC
Q 013964 109 SNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPP 188 (433)
Q Consensus 109 s~~~~~L~~~q~~aL~efr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (433)
||++++|++.|+++|++||+.|++....
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~~~---------------------------------------------------- 29 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVLPA---------------------------------------------------- 29 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGGGG----------------------------------------------------
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhccC----------------------------------------------------
Confidence 7999999999999999999999876321
Q ss_pred CCCCCCccchhhcCCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCccCccchhhh-ccc--eEeeec
Q 013964 189 PPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDD-LEK--VVFMHG 265 (433)
Q Consensus 189 ~~~~~~~~~~~~wgvpll~~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~iD~i~~e~~~~e-l~~--~~~~~G 265 (433)
+ +..+|.+||||||||+||+++|.+||+++++||++++++.+.. +..++ +.+ ..+++|
T Consensus 30 ----------------l--~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g 90 (403)
T 1olm_A 30 ----------------L--PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCG 90 (403)
T ss_dssp ----------------S--SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEE
T ss_pred ----------------C--CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeec
Confidence 1 2478999999999999999999999999999999999988775 32222 221 234799
Q ss_pred cCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeeEEEEEeeCCCCCCCCchh
Q 013964 266 FDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR----PGGVSTIFQVNDLKNSPGPGKRE 341 (433)
Q Consensus 266 ~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~----~~~i~~itvIiDlkg~sgls~~~ 341 (433)
+|++||||+|+++|++|++++++.. +.++++|++++++|.+++.+..+ ..++.++++|+||+|++..+++.
T Consensus 91 ~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~ 165 (403)
T 1olm_A 91 YDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWK 165 (403)
T ss_dssp ECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCH
T ss_pred cCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhh
Confidence 9999999999999999999876643 36899999999999999877543 23588999999999875333322
Q ss_pred -HHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCCcccCCC
Q 013964 342 -LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVV 420 (433)
Q Consensus 342 -L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~LP~eyGG 420 (433)
....++.++.++|+|||+||+++||||+||+|.++|++|||||+++|++||+|+++ ++.+.|.+||++ ++||.+|||
T Consensus 166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~-~~LP~~yGG 243 (403)
T 1olm_A 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISP-DQVPVEYGG 243 (403)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCG-GGSBGGGTS
T ss_pred HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcCh-hhCchhhCC
Confidence 35678999999999999999999999999999999999999999999999999986 577899999999 999999999
Q ss_pred CcCCCCc
Q 013964 421 ALLFGWL 427 (433)
Q Consensus 421 t~~~~~~ 427 (433)
++++..+
T Consensus 244 ~~~~~~~ 250 (403)
T 1olm_A 244 TMTDPDG 250 (403)
T ss_dssp SBCCTTC
T ss_pred CcCCCCC
Confidence 9988543
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=7.5e-44 Score=343.14 Aligned_cols=199 Identities=24% Similarity=0.315 Sum_probs=165.5
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcC-C-CccCccchhhhc-cc-eEeeeccCCCCCeEEEEEcCCcCh
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG-I-EALLNEDLGDDL-EK-VVFMHGFDRDGHPVCYNVYGEFQN 283 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~-i-D~i~~e~~~~el-~~-~~~~~G~Dk~GrPV~~~r~g~~d~ 283 (433)
...+|.+|+||||||+||+++|.+||++++.||+.++ + +++....+...+ .+ ..+++|+|++||||+|+++|++|+
T Consensus 29 ~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~ 108 (262)
T 1r5l_A 29 LPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDP 108 (262)
T ss_dssp SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCT
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCc
Confidence 4568999999999999999999999999999999986 2 222222222222 23 346889999999999999999988
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEeeCCCCCCCCchhH----HHHHHHHHHHHhhhccc
Q 013964 284 KQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKREL----RIATKQALQLLQDNYPE 359 (433)
Q Consensus 284 k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~i~~itvIiDlkg~sgls~~~L----~~~~k~il~llq~nYPE 359 (433)
+.+ +..+++|+.++++|.+++.+. .++.++++|+||+|++ +.++ .+.++.++.++|+|||+
T Consensus 109 ~~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~s---~~~~~~~~~~~~k~~~~~~q~~yPe 173 (262)
T 1r5l_A 109 KVF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGWQ---FSHAFQITPSVAKKIAAVLTDSFPL 173 (262)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTCC---HHHHHHCCHHHHHHHHHHHHTSSSS
T ss_pred ccC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCCC---HHHHhccCHHHHHHHHHHHHhhCCh
Confidence 653 256889999999998875432 2457899999999763 4443 36789999999999999
Q ss_pred ccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCCcccCCCCcCC
Q 013964 360 FVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLF 424 (433)
Q Consensus 360 rL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~LP~eyGGt~~~ 424 (433)
||+++||||+||+|.++|+++||||+++|++||+|+++ ++.+.|.+||+ ++||.+|||++..
T Consensus 174 rl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~--~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 174 KVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP--DILPLEYGGEEFS 235 (262)
T ss_dssp CEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST--TTSCGGGTCSSCC
T ss_pred hhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh--hhCcHhhCCCCCC
Confidence 99999999999999999999999999999999999986 57899999995 8999999999864
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.7e-42 Score=345.88 Aligned_cols=204 Identities=16% Similarity=0.346 Sum_probs=170.4
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcC--CCccCccchhhhc-cce-EeeeccCCCCCeEEEEEcCCcCh
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFG--IEALLNEDLGDDL-EKV-VFMHGFDRDGHPVCYNVYGEFQN 283 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~--iD~i~~e~~~~el-~~~-~~~~G~Dk~GrPV~~~r~g~~d~ 283 (433)
...||.+||||||||+||+++|.+||++++.||+.++ .+++..+.+...+ .+. ++++|+|++||||+|+++|++|+
T Consensus 88 ~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~ 167 (316)
T 3hx3_A 88 QEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQS 167 (316)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCC
Confidence 3468999999999999999999999999999999987 2333222222223 233 56889999999999999999988
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEeeCCCCCCCCchhH----HHHHHHHHHHHhhhccc
Q 013964 284 KQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKREL----RIATKQALQLLQDNYPE 359 (433)
Q Consensus 284 k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~i~~itvIiDlkg~sgls~~~L----~~~~k~il~llq~nYPE 359 (433)
+.+ +.++++|++++++|.+++.. ..++.++++|+||+|++ +.++ .+.++.++.++|+|||+
T Consensus 168 ~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~s---l~~~~~~~~~~~k~~~~~lq~~YPe 232 (316)
T 3hx3_A 168 QEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGFT---MQQAASLRTSDLRKMVDMLQDSFPA 232 (316)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTCC---HHHHHHCCHHHHHHHHHHHHTTSTT
T ss_pred CCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCCC---HHHhccCChHHHHHHHHHHHHhhhh
Confidence 753 35789999999999987533 34678899999999764 4343 35689999999999999
Q ss_pred ccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCCcccCCCCcCCCCccCC
Q 013964 360 FVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSR 430 (433)
Q Consensus 360 rL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~LP~eyGGt~~~~~~~~~ 430 (433)
||+++||||+||+|.++|+++||||+++|++||+|+++ + .+.|.+||++ ++||.+|||+++ .++++.
T Consensus 233 rL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~-~~~L~~~I~~-~~LP~eyGG~~~-~~d~~~ 299 (316)
T 3hx3_A 233 WFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-D-LSGFYQEIDE-NILPSDFGGTLP-KYDGKA 299 (316)
T ss_dssp TEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-C-CHHHHHHSCG-GGSBGGGTSSBC-CCCHHH
T ss_pred hhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-C-HHHHHhhCCH-hhCcHhhCCCCC-CcChhH
Confidence 99999999999999999999999999999999999975 2 5789999999 999999999997 455544
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.03 E-value=3e-10 Score=110.17 Aligned_cols=133 Identities=13% Similarity=0.152 Sum_probs=102.9
Q ss_pred ceEeeeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEeeCCCCCCCC
Q 013964 259 KVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPG 338 (433)
Q Consensus 259 ~~~~~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~i~~itvIiDlkg~sgls 338 (433)
+.+|-.|.|++|+||+++..++++...+ +.+.++.+.+..++.++ . ..+.+|+|++|.+..+
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~------~---~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY------A---KPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT------T---SCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc------C---CCeEEEEECCCCCccc
Confidence 4566679999999999999999876443 35667766666655443 1 2378999999875433
Q ss_pred chhHHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHH-HhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCC
Q 013964 339 KRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTM-ISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSL 414 (433)
Q Consensus 339 ~~~L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~l-VKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~L 414 (433)
... .+.++.+.+++-..|...|+++||+|+++||...|.. .++|.+.+..+|++++++ ...|.++|+. ++|
T Consensus 73 ~p~-~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s---l~eL~~~i~~-~~L 144 (256)
T 3pg7_A 73 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEH-EQQ 144 (256)
T ss_dssp CCC-HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS---TTGGGGTSCG-GGC
T ss_pred CCc-HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC---HHHHHhhcCH-HHc
Confidence 333 5678999999999999999999999999999977665 456666688899999975 7889999976 554
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=105.63 Aligned_cols=132 Identities=13% Similarity=0.150 Sum_probs=93.0
Q ss_pred ceEeeeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEeeCCCCCCCC
Q 013964 259 KVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPG 338 (433)
Q Consensus 259 ~~~~~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~i~~itvIiDlkg~sgls 338 (433)
+.+|-.|.|++|+||+|+..++++...+ +.+.++-+.+..++.++ . ..+.+|+|+++.+..+
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~------~---~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY------A---KPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT------T---SCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc------C---CCeEEEEEcCCCCccC
Confidence 4455668999999999999999876433 35566655555554432 1 2488999999875433
Q ss_pred chhHHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHH-HHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCC
Q 013964 339 KRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFH-TMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILS 413 (433)
Q Consensus 339 ~~~L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw-~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~ 413 (433)
... .+.++.+.+++...|...++++||+|+++||...+ .+.++|.+.+..+|+++++. ...|..+|+. ++
T Consensus 92 ~p~-~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~-~~ 162 (290)
T 3peg_A 92 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEH-EQ 162 (290)
T ss_dssp CCC-HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred CCh-HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCH-HH
Confidence 333 56789999999999999999999999999988754 56777888888999999875 3448888877 64
No 8
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=54.80 E-value=54 Score=26.04 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
+..+|..|.+-....+||+++|+..+-+.
T Consensus 47 dsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 47 DAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 55679999999999999999999998764
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.91 E-value=16 Score=27.09 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHH
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKN 235 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~ 235 (433)
+..+...+-.-|+++++|++.|+.+|.+
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4578899999999999999999999865
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.18 E-value=62 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.7
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIK 234 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk 234 (433)
+......||.+++||++.|+..+-
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888999999999999998763
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.18 E-value=80 Score=23.69 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=20.7
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIKN 235 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk~ 235 (433)
+......||..++||++.|+..+-.
T Consensus 33 d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 33 SMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3567889999999999999887643
No 12
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=41.17 E-value=89 Score=25.87 Aligned_cols=93 Identities=10% Similarity=0.042 Sum_probs=53.9
Q ss_pred CCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCC--eeEEEEEeeCCCCCCCCchhHHH
Q 013964 267 DRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG--VSTIFQVNDLKNSPGPGKRELRI 344 (433)
Q Consensus 267 Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~--i~~itvIiDlkg~sgls~~~L~~ 344 (433)
+..+..|.+...|.++. +++-. .+-.++..++. .+. +.- ++|++++.|....-+|.
T Consensus 16 ~~~~~vl~v~~~G~lt~--------------~d~~~-l~~~l~~~l~~----~~~~~i~l---l~~~~~f~G~~~~a~~~ 73 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLTH--------------EDYEQ-MTPLLESALAG----IKTPEIVA---LIDITELDGLSLHAAWD 73 (126)
T ss_dssp ETTEEEEEEEEEEEECH--------------HHHHH-HHHHHHHHTTT----CCSSCEEE---EEEEEEEEEECHHHHHH
T ss_pred cCCCCEEEEEEEeeECH--------------HHHHH-HHHHHHHHHHh----CCCceEEE---EEEecCCCCCCHHHHHH
Confidence 44555556655566543 34433 34455554321 233 444 44444433444444444
Q ss_pred HHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCH
Q 013964 345 ATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQ 386 (433)
Q Consensus 345 ~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~ 386 (433)
-++. -..|+ ..+.|+=||--+.|...+-++.++|++-
T Consensus 74 d~k~----~~~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~~~ 110 (126)
T 2q3l_A 74 DLKL----GLKHG-KEFKRVAIIGQGELQEWATRVANWFTPG 110 (126)
T ss_dssp HHHH----HHHHG-GGEEEEEEECCSHHHHHHHHHHHHHCSS
T ss_pred HHHh----hhhHH-hcCCEEEEEcChHHHHHHHHHHhhccCC
Confidence 3332 22443 7789999999999999999999999764
No 13
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.84 E-value=51 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
+..+...|..-|+++++|++.|+..|.+.
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45788899999999999999999998764
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=31.59 E-value=44 Score=23.81 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
|..+-..+.+-|+++++|+++|..+|.+-
T Consensus 16 P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 16 PAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 44667788889999999999999998764
No 15
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=29.06 E-value=60 Score=21.09 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.3
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMI 233 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mL 233 (433)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 34566889999999999998765
No 16
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.77 E-value=81 Score=28.52 Aligned_cols=58 Identities=3% Similarity=0.009 Sum_probs=41.3
Q ss_pred HHHHHHhhhcccccceEEEEeCCHHHHHHHHHHh-----hcCCHhhhcceEEeCCCCChhHHhhhCCC
Q 013964 348 QALQLLQDNYPEFVAKQVFINVPWWYLAFHTMIS-----PFMTQRTKSKFVFAGPSKSTETLFKLVNI 410 (433)
Q Consensus 348 ~il~llq~nYPErL~rI~IINaP~~f~~vw~lVK-----pFLs~kTr~KI~ilg~~~~~e~L~k~Id~ 410 (433)
.++.+.|-.+- -+-|+++|..-++.-++.++. -|++++.++.|++..+ .+++.++|.|
T Consensus 127 e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~---~ee~~~~l~~ 189 (189)
T 3sbx_A 127 DVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN---LDDALQACAP 189 (189)
T ss_dssp HHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS---HHHHHHHHCC
T ss_pred HHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC---HHHHHHHhcC
Confidence 33444454442 368999999766666666554 4899999999999975 7888887754
No 17
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=26.80 E-value=49 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMI 233 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mL 233 (433)
+......||.+++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 57888999999999999998775
No 18
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.52 E-value=66 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHH
Q 013964 208 DDRTDVILLKFLRARDFKVRDAFVMIKN 235 (433)
Q Consensus 208 ~~~dD~~LLRFLRArkfdVekA~~mLk~ 235 (433)
+...+.|+.+.|..++.|++.+...|-.
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4588999999999999999999998765
No 19
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.99 E-value=86 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=21.6
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
++..-++-|++.++|+++|...|..+
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44556899999999999999988764
No 20
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.75 E-value=63 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=21.8
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
+....++-|++.++|+++|...|..+
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 67777899999999999999887653
No 21
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.20 E-value=74 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=22.5
Q ss_pred CCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 210 RTDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 210 ~dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
.++..-+|-|++.++||++|++.|..+
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 356667999999999999999888654
No 22
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.00 E-value=69 Score=23.49 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=22.0
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIKNT 236 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk~~ 236 (433)
++...++-|++.++|+++|...|..+
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46677999999999999999988653
No 23
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.71 E-value=81 Score=21.84 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=20.5
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIK 234 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk 234 (433)
++...++-|++.++|+++|...|-
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456679999999999999998774
No 24
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.48 E-value=75 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.0
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHH
Q 013964 211 TDVILLKFLRARDFKVRDAFVMIK 234 (433)
Q Consensus 211 dD~~LLRFLRArkfdVekA~~mLk 234 (433)
.-.+|-|.|.+.++|+.+|.+.|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 446899999999999999998874
Done!