Query 013965
Match_columns 433
No_of_seqs 326 out of 2937
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 00:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 9.6E-77 2.1E-81 561.9 32.4 380 54-433 16-432 (519)
2 PTZ00110 helicase; Provisional 100.0 1.2E-72 2.7E-77 562.0 47.6 389 44-432 73-467 (545)
3 KOG0336 ATP-dependent RNA heli 100.0 3.1E-69 6.7E-74 482.3 26.2 378 53-431 166-554 (629)
4 KOG0339 ATP-dependent RNA heli 100.0 2E-67 4.4E-72 482.0 30.3 379 53-432 177-558 (731)
5 KOG0330 ATP-dependent RNA heli 100.0 5.6E-67 1.2E-71 465.5 27.5 328 97-431 59-389 (476)
6 KOG0333 U5 snRNP-like RNA heli 100.0 2E-65 4.4E-70 470.9 27.5 362 69-432 215-607 (673)
7 PLN00206 DEAD-box ATP-dependen 100.0 3.7E-63 8E-68 492.8 42.7 378 53-432 74-458 (518)
8 KOG0341 DEAD-box protein abstr 100.0 2.2E-65 4.7E-70 454.7 16.8 369 61-432 132-511 (610)
9 COG0513 SrmB Superfamily II DN 100.0 6E-62 1.3E-66 480.7 37.8 328 99-430 29-361 (513)
10 KOG0334 RNA helicase [RNA proc 100.0 1E-62 2.3E-67 488.8 25.5 377 53-430 318-701 (997)
11 KOG0328 Predicted ATP-dependen 100.0 5.3E-61 1.2E-65 410.1 25.4 331 93-430 21-354 (400)
12 KOG0335 ATP-dependent RNA heli 100.0 9.4E-61 2E-65 445.4 29.3 354 77-431 50-426 (482)
13 KOG0338 ATP-dependent RNA heli 100.0 1.4E-61 3.1E-66 444.0 23.1 331 98-432 180-516 (691)
14 PRK04837 ATP-dependent RNA hel 100.0 5.9E-58 1.3E-62 447.5 40.6 333 98-432 7-345 (423)
15 KOG0343 RNA Helicase [RNA proc 100.0 3.6E-59 7.8E-64 431.9 28.7 334 96-432 66-405 (758)
16 PRK10590 ATP-dependent RNA hel 100.0 1.2E-57 2.7E-62 448.0 38.8 332 99-432 1-335 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 2.4E-57 5.3E-62 453.6 38.9 333 98-432 8-347 (572)
18 PRK11776 ATP-dependent RNA hel 100.0 3.5E-57 7.6E-62 446.8 38.9 326 99-432 4-332 (460)
19 PRK11634 ATP-dependent RNA hel 100.0 6.4E-57 1.4E-61 452.9 38.0 328 98-432 5-335 (629)
20 KOG0340 ATP-dependent RNA heli 100.0 3.7E-58 8E-63 404.6 24.6 329 98-431 6-343 (442)
21 KOG0342 ATP-dependent RNA heli 100.0 1.8E-57 3.9E-62 416.5 27.2 336 97-433 80-421 (543)
22 PRK11192 ATP-dependent RNA hel 100.0 2.5E-55 5.4E-60 431.1 39.9 330 100-432 2-335 (434)
23 KOG0345 ATP-dependent RNA heli 100.0 3.9E-56 8.6E-61 405.1 31.1 332 99-431 4-346 (567)
24 KOG0326 ATP-dependent RNA heli 100.0 6.9E-58 1.5E-62 397.4 16.1 325 99-431 85-411 (459)
25 KOG0346 RNA helicase [RNA proc 100.0 8.3E-56 1.8E-60 399.6 24.1 335 99-433 19-394 (569)
26 PRK01297 ATP-dependent RNA hel 100.0 7.8E-54 1.7E-58 424.0 39.6 334 97-432 85-425 (475)
27 KOG0348 ATP-dependent RNA heli 100.0 2E-54 4.2E-59 399.2 25.6 335 98-432 135-537 (708)
28 PTZ00424 helicase 45; Provisio 100.0 4.5E-52 9.7E-57 405.1 39.7 328 98-432 27-357 (401)
29 KOG0337 ATP-dependent RNA heli 100.0 2.7E-52 5.9E-57 375.0 20.7 330 98-432 20-351 (529)
30 KOG0347 RNA helicase [RNA proc 100.0 4.2E-53 9.1E-58 391.6 15.6 335 95-432 177-553 (731)
31 KOG0332 ATP-dependent RNA heli 100.0 2E-50 4.4E-55 357.8 25.2 319 96-423 87-411 (477)
32 KOG0327 Translation initiation 100.0 1.1E-49 2.3E-54 356.1 22.6 324 98-430 25-351 (397)
33 TIGR03817 DECH_helic helicase/ 100.0 5.1E-48 1.1E-52 395.9 34.8 313 105-432 20-369 (742)
34 KOG0344 ATP-dependent RNA heli 100.0 7.4E-49 1.6E-53 368.1 21.5 349 80-430 113-476 (593)
35 PLN03137 ATP-dependent DNA hel 100.0 7.1E-46 1.5E-50 378.1 33.2 309 104-430 442-768 (1195)
36 KOG4284 DEAD box protein [Tran 100.0 6.2E-47 1.3E-51 356.3 20.1 330 92-429 18-359 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 3.8E-45 8.2E-50 360.6 29.9 295 116-431 6-315 (470)
38 KOG0350 DEAD-box ATP-dependent 100.0 2E-45 4.3E-50 337.3 21.6 319 110-433 148-524 (620)
39 PRK13767 ATP-dependent helicas 100.0 5.6E-44 1.2E-48 373.2 33.0 323 106-432 18-380 (876)
40 PRK11057 ATP-dependent DNA hel 100.0 3.5E-43 7.6E-48 355.3 31.7 301 108-430 11-324 (607)
41 PRK02362 ski2-like helicase; P 100.0 2.1E-43 4.5E-48 365.7 30.5 302 99-416 1-352 (737)
42 TIGR01389 recQ ATP-dependent D 100.0 1.2E-42 2.6E-47 352.5 30.0 293 117-431 9-313 (591)
43 COG1201 Lhr Lhr-like helicases 100.0 1.6E-42 3.4E-47 347.0 29.4 320 106-432 8-344 (814)
44 PRK00254 ski2-like helicase; P 100.0 4.1E-42 9E-47 355.2 31.3 300 100-416 2-344 (720)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.6E-42 1E-46 345.5 30.7 294 117-429 12-370 (844)
46 PRK01172 ski2-like helicase; P 100.0 8.6E-42 1.9E-46 351.4 29.7 302 100-421 2-339 (674)
47 KOG0329 ATP-dependent RNA heli 100.0 2.2E-42 4.8E-47 291.9 13.8 291 99-430 42-336 (387)
48 PRK09401 reverse gyrase; Revie 100.0 4.2E-40 9.1E-45 348.3 33.9 287 111-421 70-410 (1176)
49 TIGR00580 mfd transcription-re 100.0 3.7E-39 8E-44 333.6 35.1 291 106-421 436-741 (926)
50 PRK14701 reverse gyrase; Provi 100.0 5.6E-39 1.2E-43 346.4 33.6 299 109-429 67-423 (1638)
51 PRK10689 transcription-repair 100.0 5.9E-39 1.3E-43 338.9 32.6 284 109-417 589-886 (1147)
52 PRK09751 putative ATP-dependen 100.0 3.5E-39 7.6E-44 342.3 29.7 290 141-433 1-368 (1490)
53 TIGR01054 rgy reverse gyrase. 100.0 2.4E-38 5.3E-43 335.4 32.7 292 108-422 65-410 (1171)
54 COG0514 RecQ Superfamily II DN 100.0 6.4E-39 1.4E-43 310.2 24.9 292 117-428 13-316 (590)
55 PRK10917 ATP-dependent DNA hel 100.0 2.3E-37 5E-42 316.3 34.2 290 108-422 248-561 (681)
56 TIGR00643 recG ATP-dependent D 100.0 7.2E-37 1.6E-41 310.7 32.8 288 109-421 224-537 (630)
57 COG1204 Superfamily II helicas 100.0 2.5E-37 5.5E-42 313.7 25.4 304 104-419 14-366 (766)
58 COG1202 Superfamily II helicas 100.0 7.7E-38 1.7E-42 291.9 18.3 318 99-432 194-528 (830)
59 PHA02653 RNA helicase NPH-II; 100.0 4.6E-36 9.9E-41 300.7 27.8 276 124-418 167-472 (675)
60 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-35 2.3E-40 294.9 30.0 287 119-427 112-430 (501)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-35 2.6E-40 304.5 30.9 272 127-422 8-292 (819)
62 TIGR01587 cas3_core CRISPR-ass 100.0 4.6E-36 9.9E-41 287.9 23.2 272 138-421 1-306 (358)
63 PRK11664 ATP-dependent RNA hel 100.0 4.1E-35 8.9E-40 301.3 28.7 272 127-422 11-295 (812)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 5.8E-34 1.3E-38 270.5 29.7 289 125-433 1-356 (357)
65 COG1111 MPH1 ERCC4-like helica 100.0 2.9E-33 6.3E-38 259.5 29.1 306 119-433 13-466 (542)
66 PRK12898 secA preprotein trans 100.0 2.3E-33 5E-38 276.9 27.3 296 117-430 100-567 (656)
67 KOG0952 DNA/RNA helicase MER3/ 100.0 5.4E-34 1.2E-38 282.4 22.4 298 117-419 106-448 (1230)
68 COG1205 Distinct helicase fami 100.0 2.3E-33 4.9E-38 288.9 27.7 314 106-429 55-402 (851)
69 KOG0349 Putative DEAD-box RNA 100.0 2.3E-34 4.9E-39 260.3 16.7 255 172-428 286-594 (725)
70 cd00268 DEADc DEAD-box helicas 100.0 5.5E-33 1.2E-37 245.1 24.8 202 101-305 1-202 (203)
71 PRK13766 Hef nuclease; Provisi 100.0 2.2E-32 4.9E-37 286.8 33.3 304 119-431 13-462 (773)
72 KOG0351 ATP-dependent DNA heli 100.0 1.5E-33 3.3E-38 288.1 22.3 297 115-428 258-571 (941)
73 KOG0352 ATP-dependent DNA heli 100.0 2.2E-33 4.7E-38 253.6 17.7 300 110-428 7-341 (641)
74 KOG0353 ATP-dependent DNA heli 100.0 1.1E-32 2.4E-37 245.7 18.6 312 102-428 74-403 (695)
75 PRK09200 preprotein translocas 100.0 1.1E-31 2.5E-36 270.5 26.2 298 117-431 75-523 (790)
76 TIGR00963 secA preprotein tran 100.0 2.2E-31 4.7E-36 264.3 26.1 296 117-430 53-498 (745)
77 KOG0354 DEAD-box like helicase 100.0 1.6E-31 3.4E-36 261.9 24.2 303 119-430 60-512 (746)
78 TIGR03714 secA2 accessory Sec 100.0 6.4E-31 1.4E-35 262.6 27.6 289 122-423 69-512 (762)
79 PRK11131 ATP-dependent RNA hel 100.0 3.3E-30 7.2E-35 269.6 26.8 267 125-419 78-364 (1294)
80 TIGR00603 rad25 DNA repair hel 100.0 9E-30 2E-34 254.4 22.3 285 120-431 254-582 (732)
81 COG1200 RecG RecG-like helicas 100.0 2.4E-28 5.2E-33 236.3 28.5 289 106-419 247-560 (677)
82 KOG0951 RNA helicase BRR2, DEA 100.0 6.7E-29 1.5E-33 249.4 23.9 313 105-425 295-664 (1674)
83 PRK05580 primosome assembly pr 100.0 1.4E-27 3.1E-32 243.4 34.1 282 121-422 144-510 (679)
84 PRK09694 helicase Cas3; Provis 100.0 3.2E-28 6.9E-33 250.0 28.4 296 119-421 284-649 (878)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 9.4E-28 2E-32 252.3 27.9 270 128-421 74-359 (1283)
86 COG1061 SSL2 DNA or RNA helica 100.0 4.3E-28 9.4E-33 235.9 22.6 286 120-430 35-370 (442)
87 PF00270 DEAD: DEAD/DEAH box h 100.0 3.9E-28 8.5E-33 207.7 19.7 165 123-293 1-168 (169)
88 PRK13104 secA preprotein trans 100.0 2.1E-27 4.5E-32 239.2 24.0 273 121-410 82-508 (896)
89 PRK12899 secA preprotein trans 100.0 2.6E-26 5.6E-31 230.9 26.7 181 67-259 31-228 (970)
90 KOG0947 Cytoplasmic exosomal R 100.0 6.1E-27 1.3E-31 230.2 20.7 277 121-419 297-682 (1248)
91 PRK12904 preprotein translocas 100.0 1.5E-26 3.3E-31 232.9 24.1 278 117-412 78-497 (830)
92 PRK04914 ATP-dependent helicas 100.0 4.1E-26 8.9E-31 235.9 26.8 299 121-430 152-584 (956)
93 COG1197 Mfd Transcription-repa 99.9 1.2E-25 2.5E-30 229.3 28.8 292 105-421 578-884 (1139)
94 TIGR00595 priA primosomal prot 99.9 3.1E-25 6.8E-30 218.5 27.0 262 140-421 1-341 (505)
95 COG4581 Superfamily II RNA hel 99.9 1.8E-25 3.9E-30 227.8 23.3 283 116-419 115-496 (1041)
96 KOG0948 Nuclear exosomal RNA h 99.9 4.5E-26 9.7E-31 219.1 12.5 273 121-417 129-496 (1041)
97 PRK11448 hsdR type I restricti 99.9 1.8E-24 3.9E-29 228.6 25.4 298 120-429 412-793 (1123)
98 COG4098 comFA Superfamily II D 99.9 5.4E-23 1.2E-27 182.0 25.4 262 121-410 97-371 (441)
99 COG1643 HrpA HrpA-like helicas 99.9 3.3E-23 7.1E-28 210.1 26.2 273 125-418 54-337 (845)
100 PRK13107 preprotein translocas 99.9 8.2E-24 1.8E-28 212.8 20.2 273 121-410 82-513 (908)
101 KOG0950 DNA polymerase theta/e 99.9 8.2E-24 1.8E-28 209.6 19.9 309 112-432 214-586 (1008)
102 PLN03142 Probable chromatin-re 99.9 4E-23 8.7E-28 214.6 25.2 297 121-430 169-578 (1033)
103 PRK12906 secA preprotein trans 99.9 2.5E-23 5.5E-28 208.9 21.9 292 121-429 80-533 (796)
104 KOG0920 ATP-dependent RNA heli 99.9 8.5E-23 1.9E-27 206.3 21.3 285 123-421 175-497 (924)
105 KOG0922 DEAH-box RNA helicase 99.9 1E-21 2.2E-26 188.6 23.6 268 125-416 55-340 (674)
106 smart00487 DEXDc DEAD-like hel 99.9 1.3E-21 2.8E-26 171.6 21.9 187 117-309 4-192 (201)
107 COG1203 CRISPR-associated heli 99.9 1.1E-21 2.4E-26 202.3 23.0 294 122-420 196-521 (733)
108 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-20 2.9E-25 198.2 30.8 303 106-422 231-757 (850)
109 KOG0923 mRNA splicing factor A 99.9 1.1E-20 2.5E-25 180.1 22.1 275 123-421 267-559 (902)
110 KOG0385 Chromatin remodeling c 99.9 1.6E-20 3.6E-25 181.7 22.5 292 121-429 167-577 (971)
111 COG1110 Reverse gyrase [DNA re 99.9 8.8E-20 1.9E-24 182.2 28.0 287 110-421 71-417 (1187)
112 KOG0924 mRNA splicing factor A 99.8 2E-19 4.3E-24 172.0 22.0 265 132-419 367-650 (1042)
113 KOG0387 Transcription-coupled 99.8 6.6E-19 1.4E-23 171.5 24.4 290 121-429 205-636 (923)
114 TIGR00348 hsdR type I site-spe 99.8 2.6E-19 5.7E-24 182.8 22.9 284 122-421 239-619 (667)
115 KOG0926 DEAH-box RNA helicase 99.8 1.4E-18 3E-23 169.0 23.5 273 127-417 262-655 (1172)
116 COG4096 HsdR Type I site-speci 99.8 3.3E-19 7.1E-24 175.5 16.8 282 120-425 164-514 (875)
117 KOG0384 Chromodomain-helicase 99.8 7.9E-20 1.7E-24 185.1 12.5 352 58-429 310-789 (1373)
118 PRK07246 bifunctional ATP-depe 99.8 3.5E-17 7.5E-22 170.2 27.4 287 117-422 242-726 (820)
119 COG1198 PriA Primosomal protei 99.8 2.1E-17 4.5E-22 165.8 24.2 283 121-423 198-565 (730)
120 KOG0925 mRNA splicing factor A 99.8 4.6E-18 1E-22 157.2 16.7 301 98-425 24-344 (699)
121 PRK12326 preprotein translocas 99.8 3.8E-17 8.3E-22 161.3 23.3 275 117-410 75-491 (764)
122 cd00046 DEXDc DEAD-like helica 99.8 1.9E-17 4.1E-22 136.7 16.9 144 137-287 1-144 (144)
123 KOG0389 SNF2 family DNA-depend 99.8 7.1E-17 1.5E-21 157.3 21.7 293 121-425 399-862 (941)
124 KOG0390 DNA repair protein, SN 99.8 1.2E-16 2.5E-21 159.6 23.7 305 121-432 238-688 (776)
125 TIGR03117 cas_csf4 CRISPR-asso 99.8 6.8E-16 1.5E-20 153.8 28.9 79 343-423 469-563 (636)
126 PRK13103 secA preprotein trans 99.7 1.3E-16 2.8E-21 161.3 19.4 275 117-410 79-513 (913)
127 KOG0949 Predicted helicase, DE 99.7 1.1E-16 2.4E-21 159.0 17.8 158 121-288 511-672 (1330)
128 PRK08074 bifunctional ATP-depe 99.7 1.4E-15 3E-20 161.1 27.4 92 331-422 737-836 (928)
129 PRK12900 secA preprotein trans 99.7 2.4E-16 5.1E-21 160.1 18.7 103 324-428 577-690 (1025)
130 PF04851 ResIII: Type III rest 99.7 7.8E-17 1.7E-21 139.5 13.1 152 121-288 3-183 (184)
131 KOG1000 Chromatin remodeling p 99.7 8.4E-16 1.8E-20 142.7 20.1 291 121-429 198-581 (689)
132 KOG1123 RNA polymerase II tran 99.7 2.2E-16 4.7E-21 146.7 16.0 266 120-418 301-615 (776)
133 TIGR00631 uvrb excinuclease AB 99.7 6.4E-15 1.4E-19 149.2 26.6 102 328-429 425-534 (655)
134 KOG0951 RNA helicase BRR2, DEA 99.7 2.4E-16 5.1E-21 160.1 16.0 333 61-418 1084-1455(1674)
135 KOG0392 SNF2 family DNA-depend 99.7 1.6E-15 3.4E-20 153.9 20.7 300 121-428 975-1431(1549)
136 CHL00122 secA preprotein trans 99.7 1.5E-15 3.2E-20 153.1 20.2 276 117-410 73-490 (870)
137 PRK12903 secA preprotein trans 99.7 7.3E-15 1.6E-19 147.4 22.0 287 118-423 76-513 (925)
138 COG0556 UvrB Helicase subunit 99.7 3.9E-15 8.5E-20 139.8 18.6 147 277-431 386-543 (663)
139 PRK12902 secA preprotein trans 99.7 1.9E-14 4.1E-19 145.0 22.2 273 121-410 85-505 (939)
140 PRK05298 excinuclease ABC subu 99.6 6.7E-14 1.4E-18 142.8 24.8 100 329-428 430-537 (652)
141 COG4889 Predicted helicase [Ge 99.6 4.9E-16 1.1E-20 152.8 8.7 314 99-424 140-560 (1518)
142 KOG0386 Chromatin remodeling c 99.6 1.3E-15 2.8E-20 152.1 10.7 290 121-428 394-815 (1157)
143 KOG0953 Mitochondrial RNA heli 99.6 5.2E-14 1.1E-18 132.8 14.2 238 136-420 191-436 (700)
144 PRK11747 dinG ATP-dependent DN 99.6 4.1E-12 8.9E-17 130.8 29.2 89 330-422 519-617 (697)
145 TIGR00604 rad3 DNA repair heli 99.5 4.6E-12 9.9E-17 131.4 27.2 73 118-195 7-83 (705)
146 COG1199 DinG Rad3-related DNA 99.5 3E-12 6.5E-17 132.6 25.2 76 344-422 479-560 (654)
147 KOG4150 Predicted ATP-dependen 99.5 3.3E-13 7.2E-18 127.5 14.5 302 115-425 280-616 (1034)
148 KOG0391 SNF2 family DNA-depend 99.5 2.3E-12 5.1E-17 130.4 20.6 98 327-424 1258-1360(1958)
149 TIGR02562 cas3_yersinia CRISPR 99.5 7.7E-12 1.7E-16 128.4 21.4 288 123-417 410-862 (1110)
150 cd00079 HELICc Helicase superf 99.4 2E-12 4.3E-17 105.2 13.4 105 328-432 11-118 (131)
151 PF02399 Herpes_ori_bp: Origin 99.4 1.3E-11 2.8E-16 123.5 20.2 259 136-417 49-353 (824)
152 KOG1002 Nucleotide excision re 99.4 1.9E-11 4.1E-16 114.1 19.6 97 328-424 619-722 (791)
153 PF06862 DUF1253: Protein of u 99.4 7.6E-11 1.7E-15 112.3 24.1 254 172-426 37-386 (442)
154 KOG4439 RNA polymerase II tran 99.4 4.5E-12 9.8E-17 122.8 15.8 100 327-426 727-833 (901)
155 PF07652 Flavi_DEAD: Flaviviru 99.4 2.4E-12 5.2E-17 102.4 11.3 136 135-291 3-140 (148)
156 PF00176 SNF2_N: SNF2 family N 99.4 2.5E-12 5.4E-17 120.4 13.1 151 125-287 1-172 (299)
157 KOG0388 SNF2 family DNA-depend 99.4 1.6E-11 3.4E-16 119.0 16.5 103 326-428 1025-1131(1185)
158 smart00488 DEXDc2 DEAD-like he 99.3 5.1E-11 1.1E-15 109.8 14.1 73 121-195 8-84 (289)
159 smart00489 DEXDc3 DEAD-like he 99.3 5.1E-11 1.1E-15 109.8 14.1 73 121-195 8-84 (289)
160 KOG1015 Transcription regulato 99.3 1.3E-10 2.8E-15 116.0 17.1 99 329-427 1126-1253(1567)
161 PRK14873 primosome assembly pr 99.3 2.9E-10 6.3E-15 115.3 20.2 138 142-296 166-312 (665)
162 PF00271 Helicase_C: Helicase 99.3 9.2E-12 2E-16 91.3 5.8 69 362-430 1-71 (78)
163 PRK12901 secA preprotein trans 99.3 1.5E-10 3.2E-15 118.6 16.2 129 122-259 168-303 (1112)
164 KOG0921 Dosage compensation co 99.2 1.4E-10 3E-15 115.4 12.9 277 131-418 388-724 (1282)
165 COG0553 HepA Superfamily II DN 99.2 1.4E-09 3.1E-14 116.9 21.6 101 329-429 692-800 (866)
166 KOG0952 DNA/RNA helicase MER3/ 99.2 4.5E-12 9.8E-17 127.9 0.8 260 121-396 927-1207(1230)
167 COG0610 Type I site-specific r 99.1 5.9E-09 1.3E-13 110.6 19.2 282 137-433 274-633 (962)
168 PF07517 SecA_DEAD: SecA DEAD- 99.1 3.3E-09 7.1E-14 95.3 14.3 127 121-259 77-210 (266)
169 smart00490 HELICc helicase sup 99.1 5.6E-10 1.2E-14 82.5 7.5 72 359-430 2-75 (82)
170 KOG2340 Uncharacterized conser 99.1 8.5E-09 1.8E-13 97.5 16.5 306 120-426 215-638 (698)
171 COG0653 SecA Preprotein transl 99.0 1.2E-08 2.6E-13 103.3 16.5 127 123-259 80-213 (822)
172 PF13086 AAA_11: AAA domain; P 98.7 1E-07 2.2E-12 85.7 10.3 72 122-194 2-75 (236)
173 PRK15483 type III restriction- 98.7 3E-07 6.5E-12 95.4 14.7 142 138-289 61-240 (986)
174 PF13604 AAA_30: AAA domain; P 98.6 2.3E-07 5E-12 80.7 9.8 122 121-285 1-129 (196)
175 PF13872 AAA_34: P-loop contai 98.5 2.6E-06 5.7E-11 76.9 13.7 169 105-292 27-225 (303)
176 PF12340 DUF3638: Protein of u 98.5 2.4E-06 5.2E-11 74.4 12.2 127 100-236 4-144 (229)
177 PF02562 PhoH: PhoH-like prote 98.5 1.3E-06 2.9E-11 75.4 10.2 143 122-285 5-154 (205)
178 KOG1016 Predicted DNA helicase 98.3 2.2E-05 4.8E-10 78.0 16.1 85 344-428 719-826 (1387)
179 PRK10875 recD exonuclease V su 98.3 7.8E-06 1.7E-10 82.7 13.1 142 123-286 154-301 (615)
180 KOG1802 RNA helicase nonsense 98.3 1.7E-06 3.8E-11 84.3 8.0 83 113-206 402-484 (935)
181 PF09848 DUF2075: Uncharacteri 98.3 4.5E-06 9.8E-11 79.8 10.3 108 138-273 3-117 (352)
182 TIGR01447 recD exodeoxyribonuc 98.3 1.4E-05 3E-10 80.7 13.6 141 123-284 147-293 (586)
183 TIGR00376 DNA helicase, putati 98.2 1E-05 2.3E-10 82.7 11.8 67 120-194 156-223 (637)
184 TIGR01448 recD_rel helicase, p 98.2 1.9E-05 4E-10 82.1 13.3 124 120-284 322-450 (720)
185 PRK10536 hypothetical protein; 98.2 3.1E-05 6.7E-10 68.9 12.2 142 117-283 55-209 (262)
186 KOG1803 DNA helicase [Replicat 98.2 9.5E-06 2.1E-10 78.9 9.6 65 121-193 185-250 (649)
187 PF13245 AAA_19: Part of AAA d 98.1 1.8E-05 4E-10 56.9 7.7 60 129-192 2-62 (76)
188 KOG1132 Helicase of the DEAD s 98.0 6.3E-05 1.4E-09 76.2 11.1 78 121-198 21-136 (945)
189 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00017 3.8E-09 75.3 14.3 121 121-284 352-474 (744)
190 PRK13889 conjugal transfer rel 97.9 0.00013 2.7E-09 77.6 12.3 123 121-286 346-470 (988)
191 COG3587 Restriction endonuclea 97.8 7.6E-05 1.6E-09 75.4 8.5 144 137-292 75-247 (985)
192 PRK04296 thymidine kinase; Pro 97.8 7.2E-05 1.6E-09 64.8 6.9 110 136-286 2-114 (190)
193 KOG1805 DNA replication helica 97.7 0.0002 4.3E-09 73.4 10.3 138 102-259 654-809 (1100)
194 PRK13826 Dtr system oriT relax 97.7 0.00047 1E-08 73.8 13.5 124 120-286 380-505 (1102)
195 PRK14974 cell division protein 97.7 0.00043 9.2E-09 65.0 11.3 55 245-299 221-276 (336)
196 TIGR02760 TraI_TIGR conjugativ 97.6 0.0032 6.9E-08 72.5 19.4 237 121-394 429-686 (1960)
197 COG3421 Uncharacterized protei 97.6 0.00051 1.1E-08 67.0 11.0 142 141-290 2-168 (812)
198 PF13307 Helicase_C_2: Helicas 97.6 8.4E-05 1.8E-09 62.9 5.2 76 344-421 9-92 (167)
199 PF13401 AAA_22: AAA domain; P 97.6 0.00033 7E-09 56.6 8.3 18 135-152 3-20 (131)
200 COG1875 NYN ribonuclease and A 97.6 0.00056 1.2E-08 63.1 10.1 146 117-284 224-385 (436)
201 PF00580 UvrD-helicase: UvrD/R 97.6 0.00024 5.1E-09 66.8 8.1 123 122-256 1-125 (315)
202 PRK12723 flagellar biosynthesi 97.6 0.0021 4.5E-08 61.6 14.4 130 137-298 175-309 (388)
203 PRK14722 flhF flagellar biosyn 97.6 0.00056 1.2E-08 64.9 10.1 132 136-299 137-270 (374)
204 PF05970 PIF1: PIF1-like helic 97.5 0.00027 5.8E-09 67.8 7.6 59 122-188 2-66 (364)
205 cd00009 AAA The AAA+ (ATPases 97.5 0.0014 3E-08 53.6 10.7 17 136-152 19-35 (151)
206 PRK11889 flhF flagellar biosyn 97.4 0.0038 8.1E-08 59.3 13.7 128 137-299 242-375 (436)
207 COG2805 PilT Tfp pilus assembl 97.4 0.00044 9.5E-09 62.2 7.2 53 93-164 100-152 (353)
208 PRK08181 transposase; Validate 97.3 0.0032 6.8E-08 57.4 11.9 118 123-289 89-211 (269)
209 COG1419 FlhF Flagellar GTP-bin 97.3 0.0051 1.1E-07 58.2 13.3 135 136-302 203-339 (407)
210 PRK06526 transposase; Provisio 97.3 0.0013 2.8E-08 59.5 9.2 24 131-154 93-116 (254)
211 smart00382 AAA ATPases associa 97.3 0.00064 1.4E-08 55.2 6.4 17 136-152 2-18 (148)
212 KOG1131 RNA polymerase II tran 97.3 0.0029 6.2E-08 60.9 11.1 73 119-195 14-90 (755)
213 PF14617 CMS1: U3-containing 9 97.2 0.00082 1.8E-08 60.0 6.6 86 171-257 125-212 (252)
214 KOG1001 Helicase-like transcri 97.2 0.0025 5.4E-08 65.2 10.7 117 137-262 153-270 (674)
215 KOG0989 Replication factor C, 97.2 0.0013 2.8E-08 59.3 7.6 46 241-287 124-169 (346)
216 PF00448 SRP54: SRP54-type pro 97.1 0.0048 1.1E-07 53.5 10.5 54 245-298 82-136 (196)
217 PRK05703 flhF flagellar biosyn 97.1 0.0064 1.4E-07 59.4 12.3 129 136-299 221-355 (424)
218 PRK06731 flhF flagellar biosyn 97.1 0.011 2.5E-07 53.7 12.9 130 135-299 74-209 (270)
219 PRK05642 DNA replication initi 97.1 0.0022 4.7E-08 57.5 8.2 45 245-289 96-141 (234)
220 PRK06893 DNA replication initi 97.1 0.0018 3.8E-08 57.9 7.6 47 244-290 89-137 (229)
221 PRK07952 DNA replication prote 97.1 0.011 2.5E-07 53.0 12.5 103 137-286 100-204 (244)
222 PRK08084 DNA replication initi 97.1 0.0026 5.6E-08 57.1 8.3 44 246-289 97-142 (235)
223 PRK06921 hypothetical protein; 97.0 0.014 3E-07 53.4 12.7 45 135-187 116-160 (266)
224 PRK11773 uvrD DNA-dependent he 97.0 0.0041 9E-08 65.4 10.5 70 121-196 9-78 (721)
225 PRK08727 hypothetical protein; 97.0 0.0042 9.2E-08 55.6 9.2 48 244-291 91-140 (233)
226 PHA02533 17 large terminase pr 97.0 0.0059 1.3E-07 61.2 11.0 147 121-286 59-209 (534)
227 TIGR01075 uvrD DNA helicase II 97.0 0.003 6.5E-08 66.4 9.4 71 120-196 3-73 (715)
228 cd01124 KaiC KaiC is a circadi 97.0 0.01 2.2E-07 51.1 11.1 49 139-196 2-50 (187)
229 PRK12377 putative replication 97.0 0.0089 1.9E-07 53.8 10.9 46 136-190 101-146 (248)
230 cd01120 RecA-like_NTPases RecA 97.0 0.025 5.4E-07 47.2 13.3 37 139-183 2-38 (165)
231 PRK08116 hypothetical protein; 97.0 0.014 3E-07 53.4 12.2 45 137-190 115-159 (268)
232 KOG0383 Predicted helicase [Ge 96.9 8.4E-05 1.8E-09 75.0 -2.7 79 328-407 614-696 (696)
233 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0062 1.3E-07 54.3 9.3 43 246-288 90-133 (226)
234 PRK14723 flhF flagellar biosyn 96.9 0.013 2.9E-07 60.6 12.4 130 136-299 185-318 (767)
235 PRK12727 flagellar biosynthesi 96.9 0.037 8E-07 54.8 14.8 129 135-298 349-481 (559)
236 PRK14712 conjugal transfer nic 96.9 0.0074 1.6E-07 67.1 11.0 64 121-188 835-900 (1623)
237 PF03354 Terminase_1: Phage Te 96.8 0.0061 1.3E-07 60.9 9.5 149 124-284 1-160 (477)
238 PRK00771 signal recognition pa 96.8 0.014 3.1E-07 56.9 11.7 52 247-298 176-228 (437)
239 KOG0298 DEAD box-containing he 96.8 0.0052 1.1E-07 65.2 9.0 151 136-291 374-554 (1394)
240 PRK05707 DNA polymerase III su 96.8 0.01 2.3E-07 55.8 10.2 40 122-162 4-47 (328)
241 PRK11054 helD DNA helicase IV; 96.8 0.0058 1.3E-07 63.3 9.1 72 120-197 195-266 (684)
242 PRK13709 conjugal transfer nic 96.8 0.014 3.1E-07 65.7 12.4 65 120-188 966-1032(1747)
243 PF05127 Helicase_RecD: Helica 96.7 0.00074 1.6E-08 56.9 1.7 124 140-288 1-124 (177)
244 PRK10919 ATP-dependent DNA hel 96.7 0.0046 9.9E-08 64.3 7.4 70 121-196 2-71 (672)
245 PTZ00112 origin recognition co 96.6 0.03 6.5E-07 58.3 12.7 23 139-162 784-806 (1164)
246 PRK08769 DNA polymerase III su 96.6 0.022 4.7E-07 53.3 10.7 143 120-286 3-152 (319)
247 PRK00149 dnaA chromosomal repl 96.6 0.019 4.1E-07 56.9 11.0 45 137-188 149-193 (450)
248 PF13177 DNA_pol3_delta2: DNA 96.6 0.034 7.4E-07 46.7 10.8 42 245-287 101-142 (162)
249 PRK06835 DNA replication prote 96.5 0.074 1.6E-06 50.0 13.6 45 135-188 182-226 (329)
250 PHA03333 putative ATPase subun 96.5 0.073 1.6E-06 54.0 14.0 68 123-197 171-241 (752)
251 PRK12402 replication factor C 96.5 0.031 6.8E-07 53.1 11.3 39 245-284 124-162 (337)
252 COG2256 MGS1 ATPase related to 96.5 0.011 2.5E-07 55.5 7.7 18 137-154 49-66 (436)
253 PRK12726 flagellar biosynthesi 96.4 0.049 1.1E-06 51.7 11.9 130 136-298 206-339 (407)
254 PTZ00293 thymidine kinase; Pro 96.4 0.033 7.1E-07 48.4 10.0 38 136-181 4-41 (211)
255 PF13173 AAA_14: AAA domain 96.4 0.034 7.3E-07 44.6 9.6 38 246-286 61-98 (128)
256 KOG0991 Replication factor C, 96.4 0.012 2.5E-07 51.2 7.0 42 244-286 111-152 (333)
257 PRK12422 chromosomal replicati 96.4 0.019 4.2E-07 56.4 9.6 108 137-293 142-251 (445)
258 PRK11331 5-methylcytosine-spec 96.4 0.011 2.5E-07 57.2 7.8 31 123-153 181-211 (459)
259 PRK14087 dnaA chromosomal repl 96.4 0.03 6.6E-07 55.2 10.8 110 137-291 142-253 (450)
260 TIGR01074 rep ATP-dependent DN 96.4 0.026 5.6E-07 59.0 10.8 70 122-197 2-71 (664)
261 COG1484 DnaC DNA replication p 96.4 0.015 3.4E-07 52.6 7.9 51 135-194 104-154 (254)
262 TIGR01547 phage_term_2 phage t 96.3 0.017 3.6E-07 56.4 8.7 145 138-299 3-152 (396)
263 TIGR00362 DnaA chromosomal rep 96.3 0.091 2E-06 51.4 13.8 38 137-180 137-174 (405)
264 COG1444 Predicted P-loop ATPas 96.3 0.027 5.9E-07 57.8 10.2 149 113-288 206-357 (758)
265 PRK14721 flhF flagellar biosyn 96.3 0.12 2.6E-06 50.2 14.1 172 136-355 191-364 (420)
266 PRK05986 cob(I)alamin adenolsy 96.3 0.027 5.9E-07 48.1 8.6 146 135-297 21-168 (191)
267 PRK07764 DNA polymerase III su 96.3 0.038 8.1E-07 58.4 11.3 39 245-284 119-157 (824)
268 TIGR02760 TraI_TIGR conjugativ 96.3 0.025 5.5E-07 65.4 10.8 62 120-188 1018-1084(1960)
269 TIGR01425 SRP54_euk signal rec 96.3 0.049 1.1E-06 52.9 11.1 53 246-298 182-235 (429)
270 COG1435 Tdk Thymidine kinase [ 96.3 0.057 1.2E-06 45.9 10.1 91 136-258 4-94 (201)
271 PRK07003 DNA polymerase III su 96.2 0.056 1.2E-06 55.7 11.9 39 245-284 118-156 (830)
272 PRK08903 DnaA regulatory inact 96.2 0.029 6.2E-07 50.1 9.0 43 246-289 90-133 (227)
273 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.074 1.6E-06 44.2 10.6 53 244-296 93-147 (159)
274 TIGR00064 ftsY signal recognit 96.2 0.073 1.6E-06 48.8 11.6 55 245-299 153-214 (272)
275 PRK10917 ATP-dependent DNA hel 96.2 0.028 6.1E-07 58.7 9.9 84 333-416 299-389 (681)
276 PRK07994 DNA polymerase III su 96.2 0.057 1.2E-06 55.3 11.6 38 245-283 118-155 (647)
277 PRK13833 conjugal transfer pro 96.2 0.022 4.8E-07 53.2 8.1 66 112-185 121-187 (323)
278 PHA02544 44 clamp loader, smal 96.2 0.026 5.7E-07 53.1 8.8 39 246-284 100-138 (316)
279 PRK09183 transposase/IS protei 96.1 0.057 1.2E-06 49.1 10.5 21 133-153 99-119 (259)
280 PRK12724 flagellar biosynthesi 96.1 0.12 2.6E-06 49.8 13.0 54 245-298 298-356 (432)
281 TIGR02785 addA_Gpos recombinat 96.1 0.034 7.3E-07 62.0 10.6 123 122-257 2-126 (1232)
282 TIGR02881 spore_V_K stage V sp 96.1 0.055 1.2E-06 49.4 10.4 18 137-154 43-60 (261)
283 PRK06995 flhF flagellar biosyn 96.1 0.028 6.1E-07 55.3 8.9 19 136-154 256-274 (484)
284 cd01122 GP4d_helicase GP4d_hel 96.1 0.036 7.9E-07 50.9 9.3 53 134-194 28-80 (271)
285 PRK14956 DNA polymerase III su 96.1 0.033 7.1E-07 54.7 9.2 18 138-155 42-59 (484)
286 PF05496 RuvB_N: Holliday junc 96.1 0.019 4.2E-07 50.1 6.9 15 138-152 52-66 (233)
287 TIGR00596 rad1 DNA repair prot 96.1 0.02 4.2E-07 60.2 8.2 69 221-289 6-74 (814)
288 PF00004 AAA: ATPase family as 96.1 0.1 2.2E-06 41.7 10.9 14 139-152 1-14 (132)
289 PRK08533 flagellar accessory p 96.1 0.086 1.9E-06 47.1 11.2 54 134-196 22-75 (230)
290 COG4962 CpaF Flp pilus assembl 96.1 0.011 2.5E-07 54.5 5.5 62 118-188 154-216 (355)
291 TIGR00708 cobA cob(I)alamin ad 96.1 0.037 8.1E-07 46.5 8.1 52 245-296 96-149 (173)
292 PRK14086 dnaA chromosomal repl 96.0 0.042 9.2E-07 55.5 9.9 48 244-291 375-424 (617)
293 PRK14958 DNA polymerase III su 96.0 0.054 1.2E-06 54.3 10.7 39 245-284 118-156 (509)
294 PRK06645 DNA polymerase III su 96.0 0.064 1.4E-06 53.5 11.0 19 137-155 44-62 (507)
295 PRK14964 DNA polymerase III su 96.0 0.035 7.6E-07 54.9 9.0 40 244-284 114-153 (491)
296 COG3973 Superfamily I DNA and 96.0 0.05 1.1E-06 53.8 9.7 92 105-198 188-286 (747)
297 TIGR01073 pcrA ATP-dependent D 96.0 0.041 8.9E-07 58.1 10.1 72 120-197 3-74 (726)
298 PLN03025 replication factor C 96.0 0.093 2E-06 49.5 11.4 40 245-286 98-137 (319)
299 PRK12323 DNA polymerase III su 96.0 0.064 1.4E-06 54.4 10.6 41 244-285 122-162 (700)
300 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.084 1.8E-06 47.4 10.6 54 135-197 20-73 (237)
301 PF00308 Bac_DnaA: Bacterial d 95.9 0.038 8.3E-07 48.9 8.2 107 138-291 36-144 (219)
302 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.13 2.8E-06 45.8 11.6 53 135-196 19-71 (229)
303 PRK14961 DNA polymerase III su 95.9 0.13 2.9E-06 49.4 12.2 39 245-284 118-156 (363)
304 PRK14088 dnaA chromosomal repl 95.9 0.15 3.2E-06 50.3 12.8 38 137-180 131-168 (440)
305 PRK14949 DNA polymerase III su 95.9 0.045 9.8E-07 57.4 9.4 38 245-283 118-155 (944)
306 PRK00411 cdc6 cell division co 95.8 0.069 1.5E-06 52.0 10.4 25 137-162 56-80 (394)
307 PRK06871 DNA polymerase III su 95.8 0.1 2.2E-06 48.9 10.9 42 244-286 105-146 (325)
308 PRK05973 replicative DNA helic 95.8 0.12 2.6E-06 46.1 10.8 82 105-196 24-115 (237)
309 PHA03368 DNA packaging termina 95.8 0.061 1.3E-06 54.3 9.6 132 136-286 254-389 (738)
310 PF02572 CobA_CobO_BtuR: ATP:c 95.8 0.15 3.3E-06 42.9 10.7 141 139-296 6-148 (172)
311 COG0470 HolB ATPase involved i 95.8 0.079 1.7E-06 50.0 10.3 40 245-285 108-147 (325)
312 TIGR00643 recG ATP-dependent D 95.8 0.047 1E-06 56.6 9.2 83 334-416 274-363 (630)
313 PF06745 KaiC: KaiC; InterPro 95.7 0.07 1.5E-06 47.5 9.2 134 135-287 18-160 (226)
314 cd03115 SRP The signal recogni 95.7 0.49 1.1E-05 40.0 14.0 54 245-298 81-135 (173)
315 smart00492 HELICc3 helicase su 95.7 0.045 9.7E-07 44.7 7.1 49 374-422 27-80 (141)
316 PRK13894 conjugal transfer ATP 95.7 0.041 9E-07 51.5 7.7 67 111-185 124-191 (319)
317 PRK11823 DNA repair protein Ra 95.7 0.11 2.3E-06 51.4 10.9 92 135-260 79-170 (446)
318 PRK06964 DNA polymerase III su 95.7 0.1 2.2E-06 49.3 10.3 42 244-286 130-171 (342)
319 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.036 7.8E-07 52.8 7.2 27 135-162 133-159 (358)
320 PRK07993 DNA polymerase III su 95.6 0.096 2.1E-06 49.5 10.0 42 244-286 106-147 (334)
321 PRK08691 DNA polymerase III su 95.6 0.13 2.8E-06 52.8 11.3 40 244-284 117-156 (709)
322 TIGR02928 orc1/cdc6 family rep 95.6 0.15 3.3E-06 49.0 11.5 25 137-162 41-65 (365)
323 PRK05580 primosome assembly pr 95.6 0.096 2.1E-06 54.6 10.6 91 328-419 173-267 (679)
324 PRK14969 DNA polymerase III su 95.5 0.2 4.3E-06 50.6 12.5 40 244-284 117-156 (527)
325 PRK14950 DNA polymerase III su 95.5 0.19 4.2E-06 51.5 12.6 41 244-286 118-158 (585)
326 PRK14965 DNA polymerase III su 95.5 0.16 3.5E-06 51.8 12.0 40 244-284 117-156 (576)
327 PRK08699 DNA polymerase III su 95.5 0.15 3.3E-06 48.0 10.9 33 123-155 3-40 (325)
328 COG2109 BtuR ATP:corrinoid ade 95.5 0.2 4.3E-06 42.3 10.2 142 139-297 31-175 (198)
329 TIGR02782 TrbB_P P-type conjug 95.5 0.068 1.5E-06 49.7 8.4 67 111-185 108-175 (299)
330 PRK14952 DNA polymerase III su 95.5 0.21 4.5E-06 50.8 12.4 40 244-284 116-155 (584)
331 TIGR03015 pepcterm_ATPase puta 95.5 0.13 2.9E-06 47.0 10.3 32 121-152 23-59 (269)
332 PRK14960 DNA polymerase III su 95.5 0.14 3E-06 52.2 10.9 39 245-284 117-155 (702)
333 PRK13342 recombination factor 95.5 0.13 2.8E-06 50.5 10.6 17 137-153 37-53 (413)
334 PRK14873 primosome assembly pr 95.4 0.09 2E-06 54.3 9.8 79 327-405 170-251 (665)
335 PF05621 TniB: Bacterial TniB 95.4 0.16 3.4E-06 46.6 10.2 112 137-279 62-180 (302)
336 PRK07471 DNA polymerase III su 95.4 0.17 3.7E-06 48.4 11.0 42 244-286 139-180 (365)
337 PRK10436 hypothetical protein; 95.4 0.06 1.3E-06 53.1 8.0 39 123-162 203-243 (462)
338 PF05876 Terminase_GpA: Phage 95.4 0.034 7.3E-07 56.4 6.4 127 121-260 16-148 (557)
339 TIGR02525 plasmid_TraJ plasmid 95.4 0.058 1.3E-06 51.6 7.6 44 135-184 148-191 (372)
340 KOG2028 ATPase related to the 95.4 0.056 1.2E-06 50.2 7.0 16 137-152 163-178 (554)
341 PRK13341 recombination factor 95.4 0.12 2.6E-06 54.0 10.4 40 246-290 109-148 (725)
342 PHA00729 NTP-binding motif con 95.3 0.15 3.4E-06 44.8 9.5 75 223-297 59-138 (226)
343 PRK14955 DNA polymerase III su 95.3 0.19 4.2E-06 48.9 11.1 41 244-286 125-165 (397)
344 PRK06090 DNA polymerase III su 95.3 0.18 3.8E-06 47.3 10.3 42 244-286 106-147 (319)
345 PRK09112 DNA polymerase III su 95.3 0.23 5E-06 47.3 11.3 40 244-284 139-178 (351)
346 PRK14957 DNA polymerase III su 95.2 0.25 5.5E-06 49.7 11.9 40 244-284 117-156 (546)
347 COG2804 PulE Type II secretory 95.2 0.053 1.1E-06 52.9 6.9 40 123-163 243-284 (500)
348 smart00491 HELICc2 helicase su 95.2 0.051 1.1E-06 44.4 5.8 42 381-422 31-81 (142)
349 COG3972 Superfamily I DNA and 95.2 0.15 3.2E-06 49.4 9.4 80 109-196 151-230 (660)
350 CHL00181 cbbX CbbX; Provisiona 95.2 0.16 3.4E-06 47.0 9.6 19 136-154 59-77 (287)
351 TIGR00580 mfd transcription-re 95.2 0.11 2.3E-06 55.9 9.6 80 337-416 493-579 (926)
352 PRK10416 signal recognition pa 95.2 0.39 8.4E-06 45.1 12.3 55 245-299 195-256 (318)
353 PRK05563 DNA polymerase III su 95.2 0.35 7.6E-06 49.2 12.9 41 244-286 117-157 (559)
354 KOG0745 Putative ATP-dependent 95.1 0.032 6.9E-07 53.0 4.9 35 137-181 227-261 (564)
355 PRK09111 DNA polymerase III su 95.1 0.18 3.9E-06 51.5 10.6 40 244-284 130-169 (598)
356 PRK13900 type IV secretion sys 95.1 0.07 1.5E-06 50.3 7.2 44 133-185 157-200 (332)
357 PRK06620 hypothetical protein; 95.1 0.054 1.2E-06 47.8 6.1 16 137-152 45-60 (214)
358 COG0593 DnaA ATPase involved i 95.1 0.29 6.3E-06 47.1 11.2 65 246-310 175-244 (408)
359 PRK14962 DNA polymerase III su 95.1 0.2 4.4E-06 49.7 10.6 18 138-155 38-55 (472)
360 COG1198 PriA Primosomal protei 95.0 0.097 2.1E-06 54.1 8.5 83 322-404 222-306 (730)
361 PRK04195 replication factor C 95.0 0.12 2.5E-06 51.8 9.0 17 136-152 39-55 (482)
362 cd01121 Sms Sms (bacterial rad 95.0 0.24 5.1E-06 47.6 10.6 91 135-259 81-171 (372)
363 PRK10867 signal recognition pa 95.0 0.3 6.5E-06 47.7 11.4 17 138-154 102-118 (433)
364 PRK14963 DNA polymerase III su 95.0 0.19 4E-06 50.4 10.3 24 138-162 38-61 (504)
365 TIGR00959 ffh signal recogniti 95.0 0.29 6.3E-06 47.8 11.3 17 138-154 101-117 (428)
366 cd01130 VirB11-like_ATPase Typ 95.0 0.07 1.5E-06 45.9 6.4 31 122-152 10-41 (186)
367 PRK14951 DNA polymerase III su 95.0 0.14 2.9E-06 52.4 9.2 40 244-284 122-161 (618)
368 COG1474 CDC6 Cdc6-related prot 94.9 0.66 1.4E-05 44.4 13.4 26 137-163 43-68 (366)
369 cd00984 DnaB_C DnaB helicase C 94.9 0.27 5.9E-06 44.2 10.4 40 134-180 11-50 (242)
370 TIGR01420 pilT_fam pilus retra 94.9 0.089 1.9E-06 50.1 7.4 43 135-184 121-163 (343)
371 PRK06067 flagellar accessory p 94.9 0.57 1.2E-05 41.9 12.3 53 135-196 24-76 (234)
372 PRK00440 rfc replication facto 94.8 0.5 1.1E-05 44.4 12.4 38 246-284 102-139 (319)
373 PRK07940 DNA polymerase III su 94.8 0.21 4.5E-06 48.3 9.6 41 244-286 115-155 (394)
374 PRK13851 type IV secretion sys 94.8 0.044 9.6E-07 51.8 4.9 44 133-185 159-202 (344)
375 PRK11034 clpA ATP-dependent Cl 94.7 0.39 8.5E-06 50.5 12.2 19 136-154 207-225 (758)
376 PF00265 TK: Thymidine kinase; 94.7 0.03 6.5E-07 47.6 3.3 35 139-181 4-38 (176)
377 TIGR00595 priA primosomal prot 94.7 0.16 3.6E-06 50.9 9.0 89 329-418 9-101 (505)
378 PF05729 NACHT: NACHT domain 94.7 0.33 7.1E-06 40.4 9.7 25 138-163 2-26 (166)
379 COG0552 FtsY Signal recognitio 94.7 0.48 1E-05 43.9 11.0 130 138-298 141-280 (340)
380 COG1110 Reverse gyrase [DNA re 94.7 0.11 2.3E-06 54.6 7.6 77 343-419 124-212 (1187)
381 PRK08939 primosomal protein Dn 94.7 0.3 6.4E-06 45.6 10.1 26 136-162 156-181 (306)
382 PRK14954 DNA polymerase III su 94.6 0.22 4.8E-06 51.0 9.7 40 244-284 125-164 (620)
383 KOG1133 Helicase of the DEAD s 94.6 0.25 5.3E-06 49.8 9.6 160 246-422 526-721 (821)
384 PRK14948 DNA polymerase III su 94.6 0.29 6.4E-06 50.3 10.6 38 244-282 119-156 (620)
385 PRK07414 cob(I)yrinic acid a,c 94.6 0.28 6.1E-06 41.4 8.6 52 245-296 114-167 (178)
386 TIGR00678 holB DNA polymerase 94.5 0.35 7.5E-06 41.6 9.6 39 244-283 94-132 (188)
387 TIGR02880 cbbX_cfxQ probable R 94.5 0.14 3E-06 47.3 7.5 18 136-153 58-75 (284)
388 PRK08451 DNA polymerase III su 94.5 0.28 6.1E-06 49.2 9.9 40 244-284 115-154 (535)
389 PRK13764 ATPase; Provisional 94.4 0.096 2.1E-06 53.1 6.7 27 135-162 256-282 (602)
390 PRK04328 hypothetical protein; 94.4 0.43 9.4E-06 43.2 10.4 53 135-196 22-74 (249)
391 PRK14959 DNA polymerase III su 94.4 0.12 2.6E-06 52.6 7.2 20 137-156 39-58 (624)
392 TIGR03499 FlhF flagellar biosy 94.4 0.092 2E-06 48.5 5.9 18 136-153 194-211 (282)
393 PRK07399 DNA polymerase III su 94.3 0.39 8.3E-06 45.1 10.0 59 225-286 104-162 (314)
394 PRK05896 DNA polymerase III su 94.3 0.29 6.2E-06 49.7 9.5 39 245-284 118-156 (605)
395 PF03796 DnaB_C: DnaB-like hel 94.3 0.25 5.3E-06 45.0 8.5 142 135-286 18-179 (259)
396 COG4626 Phage terminase-like p 94.2 0.36 7.8E-06 47.8 9.9 144 121-285 61-223 (546)
397 PF02534 T4SS-DNA_transf: Type 94.2 0.057 1.2E-06 53.9 4.7 50 137-196 45-94 (469)
398 cd01129 PulE-GspE PulE/GspE Th 94.2 0.14 3E-06 46.8 6.7 53 123-183 65-119 (264)
399 TIGR02655 circ_KaiC circadian 94.2 0.46 9.9E-06 47.6 10.9 52 136-196 263-314 (484)
400 TIGR02639 ClpA ATP-dependent C 94.2 0.8 1.7E-05 48.4 13.1 19 136-154 203-221 (731)
401 COG3267 ExeA Type II secretory 94.1 0.39 8.6E-06 42.7 8.8 27 133-160 47-74 (269)
402 TIGR03600 phage_DnaB phage rep 94.1 0.5 1.1E-05 46.5 10.8 51 134-193 192-243 (421)
403 PF01443 Viral_helicase1: Vira 94.0 0.055 1.2E-06 48.4 3.7 14 139-152 1-14 (234)
404 COG2909 MalT ATP-dependent tra 94.0 0.17 3.6E-06 52.4 7.2 43 247-289 130-172 (894)
405 PRK10689 transcription-repair 93.9 0.31 6.7E-06 53.7 9.8 75 342-416 647-728 (1147)
406 PF01695 IstB_IS21: IstB-like 93.9 0.15 3.3E-06 43.5 5.9 48 132-188 43-90 (178)
407 TIGR02538 type_IV_pilB type IV 93.8 0.14 3E-06 52.2 6.5 45 114-162 295-341 (564)
408 TIGR03346 chaperone_ClpB ATP-d 93.8 1.1 2.3E-05 48.3 13.4 18 137-154 195-212 (852)
409 KOG1133 Helicase of the DEAD s 93.7 0.085 1.8E-06 53.0 4.6 43 121-163 15-61 (821)
410 PRK06904 replicative DNA helic 93.7 1.2 2.5E-05 44.4 12.6 116 135-260 220-348 (472)
411 PRK06647 DNA polymerase III su 93.7 0.51 1.1E-05 48.0 10.2 41 244-286 117-157 (563)
412 TIGR02533 type_II_gspE general 93.7 0.15 3.2E-06 50.9 6.3 45 114-162 221-267 (486)
413 PRK04841 transcriptional regul 93.7 0.54 1.2E-05 51.2 11.2 44 246-289 121-164 (903)
414 PHA03372 DNA packaging termina 93.6 0.38 8.3E-06 48.2 8.8 127 136-286 202-336 (668)
415 TIGR03689 pup_AAA proteasome A 93.6 0.41 8.9E-06 47.8 9.2 17 136-152 216-232 (512)
416 PRK13897 type IV secretion sys 93.6 0.089 1.9E-06 53.6 4.7 50 137-196 159-208 (606)
417 cd03239 ABC_SMC_head The struc 93.6 0.11 2.3E-06 44.4 4.5 41 245-285 115-156 (178)
418 TIGR00635 ruvB Holliday juncti 93.6 0.41 8.8E-06 44.8 8.8 16 137-152 31-46 (305)
419 TIGR00767 rho transcription te 93.6 0.46 9.9E-06 45.6 9.0 18 135-152 167-184 (415)
420 PRK14971 DNA polymerase III su 93.5 0.85 1.8E-05 47.0 11.6 41 244-286 119-159 (614)
421 TIGR00416 sms DNA repair prote 93.5 0.77 1.7E-05 45.4 10.9 91 135-259 93-183 (454)
422 PF00437 T2SE: Type II/IV secr 93.5 0.13 2.8E-06 47.2 5.3 44 134-185 125-168 (270)
423 cd01126 TraG_VirD4 The TraG/Tr 93.5 0.06 1.3E-06 52.3 3.1 49 138-196 1-49 (384)
424 COG1219 ClpX ATP-dependent pro 93.5 0.094 2E-06 47.9 4.0 26 136-163 97-122 (408)
425 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.58 1.3E-05 41.5 9.2 53 135-196 15-67 (224)
426 PF06733 DEAD_2: DEAD_2; Inte 93.4 0.048 1E-06 46.4 2.0 46 216-261 113-160 (174)
427 PF03237 Terminase_6: Terminas 93.3 2.3 5E-05 40.7 14.0 145 140-302 1-154 (384)
428 PRK14953 DNA polymerase III su 93.3 0.44 9.5E-06 47.6 9.0 41 244-286 117-157 (486)
429 PRK10865 protein disaggregatio 93.3 0.68 1.5E-05 49.7 10.9 17 137-153 200-216 (857)
430 TIGR03819 heli_sec_ATPase heli 93.3 0.24 5.2E-06 46.9 6.7 64 111-185 154-218 (340)
431 PRK06305 DNA polymerase III su 93.2 0.77 1.7E-05 45.4 10.4 38 245-283 120-157 (451)
432 PTZ00146 fibrillarin; Provisio 93.2 1.5 3.2E-05 40.3 11.4 37 119-155 107-151 (293)
433 cd01128 rho_factor Transcripti 93.2 0.33 7.2E-06 43.8 7.2 18 134-151 14-31 (249)
434 KOG0738 AAA+-type ATPase [Post 93.2 0.71 1.5E-05 43.6 9.3 16 137-152 246-261 (491)
435 PF03969 AFG1_ATPase: AFG1-lik 93.2 1.4 3E-05 42.2 11.7 110 136-291 62-172 (362)
436 CHL00095 clpC Clp protease ATP 93.2 1 2.3E-05 48.2 12.1 19 137-155 201-219 (821)
437 PHA00012 I assembly protein 93.2 2.9 6.3E-05 38.9 13.1 54 245-299 80-139 (361)
438 COG0630 VirB11 Type IV secreto 93.0 0.26 5.7E-06 46.1 6.4 56 121-185 127-183 (312)
439 TIGR03345 VI_ClpV1 type VI sec 93.0 1.7 3.6E-05 46.8 13.1 28 126-153 192-225 (852)
440 COG1200 RecG RecG-like helicas 93.0 0.6 1.3E-05 47.3 9.1 89 328-416 295-390 (677)
441 PRK09087 hypothetical protein; 92.9 0.36 7.8E-06 42.9 7.0 38 248-287 89-126 (226)
442 cd01131 PilT Pilus retraction 92.9 0.17 3.7E-06 44.0 4.8 38 139-183 4-41 (198)
443 PRK07133 DNA polymerase III su 92.9 0.76 1.6E-05 47.7 10.1 41 244-286 116-156 (725)
444 TIGR01243 CDC48 AAA family ATP 92.9 0.65 1.4E-05 49.2 10.0 17 136-152 487-503 (733)
445 COG5008 PilU Tfp pilus assembl 92.8 0.18 3.8E-06 45.0 4.7 25 138-163 129-153 (375)
446 TIGR02397 dnaX_nterm DNA polym 92.8 0.83 1.8E-05 43.7 9.9 25 137-162 37-61 (355)
447 PRK08058 DNA polymerase III su 92.8 0.93 2E-05 42.9 10.0 41 244-285 108-148 (329)
448 PRK07004 replicative DNA helic 92.8 0.75 1.6E-05 45.7 9.6 115 135-259 212-337 (460)
449 PRK09376 rho transcription ter 92.7 0.72 1.6E-05 44.2 8.9 38 124-162 154-194 (416)
450 TIGR01243 CDC48 AAA family ATP 92.6 0.96 2.1E-05 47.9 10.8 18 135-152 211-228 (733)
451 TIGR02868 CydC thiol reductant 92.6 0.26 5.7E-06 50.1 6.5 41 244-284 486-526 (529)
452 PRK08506 replicative DNA helic 92.6 0.85 1.8E-05 45.5 9.8 113 135-259 191-315 (472)
453 TIGR00665 DnaB replicative DNA 92.6 1.3 2.8E-05 43.8 11.1 113 135-259 194-318 (434)
454 KOG0742 AAA+-type ATPase [Post 92.6 0.3 6.4E-06 46.3 6.0 16 137-152 385-400 (630)
455 COG2255 RuvB Holliday junction 92.6 0.34 7.3E-06 43.8 6.1 27 230-260 91-117 (332)
456 KOG0741 AAA+-type ATPase [Post 92.5 0.91 2E-05 44.7 9.4 68 104-181 494-573 (744)
457 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 0.86 1.9E-05 37.3 8.2 31 244-274 86-116 (144)
458 TIGR02012 tigrfam_recA protein 92.5 0.24 5.2E-06 46.3 5.4 44 135-186 54-97 (321)
459 PF03266 NTPase_1: NTPase; In 92.5 0.1 2.2E-06 44.0 2.7 34 245-281 94-129 (168)
460 KOG2228 Origin recognition com 92.4 6.5 0.00014 36.7 14.2 71 231-301 122-197 (408)
461 KOG2227 Pre-initiation complex 92.4 3.5 7.6E-05 40.1 13.0 49 136-190 175-224 (529)
462 PRK00080 ruvB Holliday junctio 92.4 0.35 7.6E-06 45.8 6.6 16 137-152 52-67 (328)
463 PF01637 Arch_ATPase: Archaeal 92.3 0.3 6.6E-06 43.3 5.8 55 229-287 105-165 (234)
464 PF05707 Zot: Zonular occluden 92.3 0.44 9.5E-06 41.2 6.6 52 246-298 79-136 (193)
465 PRK13850 type IV secretion sys 92.3 0.13 2.8E-06 53.1 3.7 51 136-196 139-189 (670)
466 PRK08840 replicative DNA helic 92.2 2.3 5E-05 42.2 12.2 116 134-259 215-342 (464)
467 PF13555 AAA_29: P-loop contai 92.2 0.21 4.5E-06 34.1 3.4 26 135-162 22-47 (62)
468 COG0466 Lon ATP-dependent Lon 92.2 0.57 1.2E-05 47.8 7.8 86 136-264 350-435 (782)
469 TIGR02688 conserved hypothetic 92.1 0.42 9.2E-06 46.1 6.5 24 131-154 204-227 (449)
470 TIGR00614 recQ_fam ATP-depende 92.0 0.78 1.7E-05 45.8 8.8 60 343-402 50-109 (470)
471 PRK14701 reverse gyrase; Provi 92.0 0.63 1.4E-05 53.1 8.8 61 343-403 121-187 (1638)
472 PRK08760 replicative DNA helic 92.0 1.2 2.5E-05 44.5 9.8 113 136-259 229-352 (476)
473 TIGR02788 VirB11 P-type DNA tr 92.0 0.28 6.1E-06 45.9 5.3 20 133-152 141-160 (308)
474 PF12846 AAA_10: AAA-like doma 91.9 0.29 6.3E-06 45.4 5.4 43 136-186 1-43 (304)
475 PRK14970 DNA polymerase III su 91.9 1.5 3.2E-05 42.3 10.3 17 137-153 40-56 (367)
476 KOG2543 Origin recognition com 91.9 2.7 5.9E-05 39.7 11.3 46 245-290 114-161 (438)
477 COG1618 Predicted nucleotide k 91.6 0.19 4.1E-06 41.3 3.2 27 137-164 6-32 (179)
478 COG1132 MdlB ABC-type multidru 91.5 0.43 9.2E-06 49.0 6.5 39 244-282 481-519 (567)
479 TIGR03878 thermo_KaiC_2 KaiC d 91.4 0.61 1.3E-05 42.5 6.7 38 135-180 35-72 (259)
480 COG0210 UvrD Superfamily I DNA 91.3 0.63 1.4E-05 48.7 7.6 71 121-197 2-72 (655)
481 cd01125 repA Hexameric Replica 91.3 1.7 3.7E-05 38.9 9.6 60 137-197 2-65 (239)
482 PF10412 TrwB_AAD_bind: Type I 91.3 0.31 6.8E-06 47.2 5.0 47 134-188 13-59 (386)
483 KOG0740 AAA+-type ATPase [Post 91.3 0.89 1.9E-05 43.9 7.8 55 245-299 244-311 (428)
484 PRK03992 proteasome-activating 91.3 1.1 2.3E-05 43.6 8.6 17 136-152 165-181 (389)
485 PRK08006 replicative DNA helic 91.3 3.7 8E-05 40.9 12.5 115 135-259 223-349 (471)
486 PRK05636 replicative DNA helic 91.2 1.2 2.6E-05 44.7 9.0 18 137-154 266-283 (505)
487 TIGR03743 SXT_TraD conjugative 91.1 0.76 1.6E-05 47.5 7.7 55 136-198 176-232 (634)
488 KOG0333 U5 snRNP-like RNA heli 91.0 0.98 2.1E-05 44.2 7.8 70 172-251 517-590 (673)
489 COG4555 NatA ABC-type Na+ tran 91.0 1.8 3.9E-05 37.3 8.5 54 244-297 149-202 (245)
490 TIGR00596 rad1 DNA repair prot 90.9 0.31 6.8E-06 51.4 4.9 40 327-366 268-317 (814)
491 PRK05564 DNA polymerase III su 90.9 2.3 5E-05 39.9 10.4 40 244-284 91-130 (313)
492 TIGR03754 conj_TOL_TraD conjug 90.9 0.89 1.9E-05 46.6 7.9 55 136-198 180-236 (643)
493 cd03238 ABC_UvrA The excision 90.9 0.6 1.3E-05 39.7 5.7 39 247-285 108-147 (176)
494 KOG0344 ATP-dependent RNA heli 90.9 3.8 8.2E-05 40.8 11.7 98 144-256 365-466 (593)
495 KOG0331 ATP-dependent RNA heli 90.9 1.2 2.7E-05 44.1 8.5 72 171-252 340-415 (519)
496 PRK13822 conjugal transfer cou 90.8 0.31 6.7E-06 50.2 4.6 51 136-196 224-274 (641)
497 PRK13876 conjugal transfer cou 90.8 0.22 4.8E-06 51.4 3.6 50 136-195 144-193 (663)
498 COG3973 Superfamily I DNA and 90.8 1.4 3.1E-05 44.0 8.8 125 278-420 589-717 (747)
499 PRK05748 replicative DNA helic 90.8 1.8 3.9E-05 42.9 9.9 115 135-259 202-327 (448)
500 TIGR00763 lon ATP-dependent pr 90.7 0.88 1.9E-05 48.5 8.0 17 136-152 347-363 (775)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-77 Score=561.90 Aligned_cols=380 Identities=62% Similarity=1.003 Sum_probs=355.9
Q ss_pred CCCCCccccccccChhhccCCHHHHHHHHHhcCceeccCC-CCCCCCCCcCC----------------------------
Q 013965 54 DGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRD-VPKPVKSFRDV---------------------------- 104 (433)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~~~---------------------------- 104 (433)
..+.++.+++|.+++........+...++..+++.+++.+ +|.|..+|++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 5678899999999999999999999999999999998876 88887776544
Q ss_pred -CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhc-CCCCCCCCCCEEEEEecCH
Q 013965 105 -GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA-QPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 105 -~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~~lil~Ptr 182 (433)
++++.+...++..||..|+|+|.++||.+++|+|++.+|.||||||++|++|++.++.. +.....+++|++||++|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 45566677777999999999999999999999999999999999999999999999998 5667788899999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC
Q 013965 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (433)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~ 262 (433)
|||.|+.+++.+++....+++.|+|||.+...|.+.+.++.+|+|+||++|+++++....+|+++.|+|+||||+|+++|
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCC-CcccccceeeeeeccChhHHHHHHHHHHHh
Q 013965 263 FEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP-DLKANHAIRQHVDIVSESQKYNKLVKLLED 340 (433)
Q Consensus 263 ~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 340 (433)
|++++++|+.++ ++++|++++|||||.+++.++..|+.+|..+.++.. +..++.++.|.+..+++.+|...|.++|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 777899999999999999999999999999998866 778999999999999999999999999998
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE
Q 013965 341 IM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII 416 (433)
Q Consensus 341 ~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~ 416 (433)
.. .++|+||||+|++.|++|+..|+..++++.+|||+.+|.+|+.+++.|++|+..||||||+++||||| +++|||
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe
Confidence 86 45599999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EcCCCcccccccCCCCC
Q 013965 417 VLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 417 ~d~p~~~~~~l~~~~~~ 433 (433)
||+|.+...|+=+-.+|
T Consensus 416 ydfP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 416 YDFPNNVEDYVHRIGRT 432 (519)
T ss_pred CCCCCCHHHHHhhcCcc
Confidence 99999999998766554
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-72 Score=562.01 Aligned_cols=389 Identities=63% Similarity=0.992 Sum_probs=360.8
Q ss_pred CCCCCCC-CCCCCCCCccccccccChhhccCCHHHHHHHHHhcCcee-ccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCC
Q 013965 44 GAESPRK-LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFE 121 (433)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~ 121 (433)
+..+++. |+...++++++++|.+++.+..+++++++.+++.+.|.+ ++.++|+|+.+|++++|++.+++.|.++||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 3344444 988899999999999999999999999999999999986 79999999999999999999999999999999
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
|+|+|.++||.+++|+|+|++||||||||++|++|++.++..++....+.++.+|||+||||||.|+.+++.+++...++
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999988766555566899999999999999999999999998899
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEE
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 281 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l 281 (433)
++.+++|+.+...+...+..+++|+|+||++|.+++......+.++++||+||||+|++++|..++++++..+++++|++
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE
Confidence 99999999999888888999999999999999999998888899999999999999999999999999999999999999
Q ss_pred EEEeccchHHHHHHHHhcC-CCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHH
Q 013965 282 YWSATWPKEVEHLARQYLY-NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQ 359 (433)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~ 359 (433)
++|||+|.+++.+++.++. ++..+.++.........+.+.+..+.+.+|...|.+++.... ...++||||++++.|+.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 9999999999999999886 578777776665666778888888888889999999998765 56799999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 360 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
++..|+..++.+..+||++++++|++++++|++|+.+|||||+++++|||+ +++||+||+|.++..|+.+.-+
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGR 467 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999877654
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-69 Score=482.30 Aligned_cols=378 Identities=44% Similarity=0.745 Sum_probs=352.7
Q ss_pred CCCCCCccccccccChhhccCCHHHHHHHHHhc-Ccee------ccCCCCCCCCCCcCC-CCCHHHHHHHHHCCCCCCcH
Q 013965 53 LDGLTPFEKNFYVESPSVAAMSEREVEEYRQQR-EITV------EGRDVPKPVKSFRDV-GFPDYVMQEISKAGFFEPTP 124 (433)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~------~~~~~p~~~~~f~~~-~l~~~l~~~l~~~g~~~~~~ 124 (433)
..++||..++||.++++.+.++.+++.++++++ .|.. +...+|+|..+|++. .-.+++++++.+.||.+|+|
T Consensus 166 W~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtP 245 (629)
T KOG0336|consen 166 WAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTP 245 (629)
T ss_pred cccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCc
Confidence 357899999999999999999999999999985 4443 244689999999874 57789999999999999999
Q ss_pred HHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC-CCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceE
Q 013965 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKS 203 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~ 203 (433)
+|+||||.+++|.|++.+|+||+|||++|++|.+.++..++.. ....++.+|+++|||+|+.|+.-++.++. ..+++.
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ks 324 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKS 324 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcce
Confidence 9999999999999999999999999999999999999887653 34458999999999999999999988875 457899
Q ss_pred EEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 013965 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 204 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~ 283 (433)
.|++||.+...++.++..+.+|+++||++|.++...+.+++..+.+||+||||+|+|++|++++++|+..++|++|+++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHH
Q 013965 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQ 363 (433)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~ 363 (433)
|||||+.+..++..|+.+|..+.++..++.+...+.|.+.+..+.+|...+..+++...+..++||||..+..|+.|...
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd 484 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSD 484 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccch
Confidence 99999999999999999999999999999999999999988889999988888999988889999999999999999999
Q ss_pred HHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 364 LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 364 L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
|.-.|+....+||+-.+.+|+..++.|++|+.+||||||+++||||+ +.||+|||+|.++..|+-+.-
T Consensus 485 ~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvG 554 (629)
T KOG0336|consen 485 FCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVG 554 (629)
T ss_pred hhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999 999999999999999975543
No 4
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-67 Score=481.98 Aligned_cols=379 Identities=46% Similarity=0.733 Sum_probs=362.7
Q ss_pred CCCCCCccccccccChhhccCCHHHHHHHHHhcCceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh
Q 013965 53 LDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM 132 (433)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~ 132 (433)
...+++++++||.++.++..+...+...++....+.+.+...|+|+.+|+++++.+.++.++.+..|++|||+|.+++|.
T Consensus 177 ~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalpt 256 (731)
T KOG0339|consen 177 EIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPT 256 (731)
T ss_pred hccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccC
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 212 (433)
+++|++++.+|.||||||.+|+.|++.|+..++.+.++++|..||++|||+||.|++.++++|++..+++++++|||.+.
T Consensus 257 alsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk 336 (731)
T KOG0339|consen 257 ALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSK 336 (731)
T ss_pred ccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcH
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHH
Q 013965 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
++|...+..++.||||||+||++++.-...++.++++||+|||++|.++||+++++.|...+++++|+|+||||++..++
T Consensus 337 ~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe 416 (731)
T KOG0339|consen 337 WEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE 416 (731)
T ss_pred HHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCcccccceeeeeecc-ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCce
Q 013965 293 HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 371 (433)
.+++.+|.+|+.+..+... ..+..+.|.+.++ ++..|..+|+..|-.....+++|||+.-+..+++++..|+.+++.+
T Consensus 417 ~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v 495 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNV 495 (731)
T ss_pred HHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccccee
Confidence 9999999999999888665 7788888888766 5678899999999888888899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 372 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 372 ~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
..+||+|.+.+|.+++.+|++++..|||+||++++|+|| ...||+||+..++..+.-++-+
T Consensus 496 ~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigr 558 (731)
T KOG0339|consen 496 SLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGR 558 (731)
T ss_pred eeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhh
Confidence 999999999999999999999999999999999999999 9999999999999887655443
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-67 Score=465.54 Aligned_cols=328 Identities=38% Similarity=0.536 Sum_probs=309.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
...+|.++++.+.+++++++.|+..||++|+++||.++.|+||++.|+||||||.+|++|+++++..++. .+.+|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999998653 58999
Q ss_pred EEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHH-cCCcccccceeEeeccc
Q 013965 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEA 255 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~lVvDEa 255 (433)
|++||||||.|+.+.++.++...++++.++.||.+...|...+.+.++|+|+|||+|.+++. ...++++.++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 56778999999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHH
Q 013965 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (433)
Q Consensus 256 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (433)
|++++++|.+.+.+|+..++..+|+++||||++..+.++.+..+.+|..+...... ..-..+.|.+..+....|...|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999998877665 55567888888899999999999
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCe
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CAC 413 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~ 413 (433)
.++++. .+..+||||++..+++.++-.|+..|+.+..+||+|+++.|.-.++.|++|...||||||+++||+|+ +++
T Consensus 293 ~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 999875 55889999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcCCCcccccccCCC
Q 013965 414 VIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 414 Vi~~d~p~~~~~~l~~~~ 431 (433)
|||||+|.+...|+=+.-
T Consensus 372 VVNyDiP~~skDYIHRvG 389 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVG 389 (476)
T ss_pred EEecCCCCcHHHHHHHcc
Confidence 999999999999875543
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2e-65 Score=470.95 Aligned_cols=362 Identities=43% Similarity=0.696 Sum_probs=339.2
Q ss_pred hhccCCHHHHHHHHHhcCceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCc
Q 013965 69 SVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSG 148 (433)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsG 148 (433)
....|++.++..|+....|.++|..+|+|+.+|++.+||.++++.+.+.||..|+|+|.++||..++.+|+|..|+||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 45677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCC----CCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCc
Q 013965 149 KTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 224 (433)
Q Consensus 149 KT~~~~l~~l~~~~~~~~~~----~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (433)
||++|++|++..+...|... .-.||.++|++|||+|++|+.++-.+|+..++++++.+.||.+..++--.+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999998776432 33599999999999999999999999999999999999999999999888999999
Q ss_pred EEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC-------------------------CCc
Q 013965 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-------------------------DRQ 279 (433)
Q Consensus 225 Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-------------------------~~~ 279 (433)
|+|+||++|++.+.+..+.++.+.+||+||||+|.|+||++++.+++.+++. -+|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 9999999999999998888999999999999999999999999999998852 179
Q ss_pred EEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHH
Q 013965 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 359 (433)
Q Consensus 280 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~ 359 (433)
+++||||+|+.++.+++.|+.+|..+.++... .....++|.++++.+.+|...|.+++++. -..++|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHH
Confidence 99999999999999999999999999999877 66678899999999999999999999886 45689999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 360 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
||+.|.+.|+.+..+||+.++++|+.+++.|++|...||||||+++||||| |.+|||||++.++..|+-+.-+
T Consensus 533 lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 533 LAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred HHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999 9999999999999998755443
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.7e-63 Score=492.76 Aligned_cols=378 Identities=35% Similarity=0.560 Sum_probs=341.0
Q ss_pred CCCCCCccccccccChhhcc-CCHHHHHHHHHhcCceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHH
Q 013965 53 LDGLTPFEKNFYVESPSVAA-MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWP 131 (433)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~ 131 (433)
..+++++++++|..++.... ++.++++.+++...|.+.|.+.|.|+.+|+++++++.+++.|.+.||..|+|+|.++||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip 153 (518)
T PLN00206 74 PKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIP 153 (518)
T ss_pred hhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 45678889999998887755 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCC--CCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECC
Q 013965 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF--LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG 209 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~--~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~ 209 (433)
.+++|+|++++||||||||++|++|++.++..... .....++++|||+|||+||.|+.+.++.+....++++..++||
T Consensus 154 ~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG 233 (518)
T PLN00206 154 AALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGG 233 (518)
T ss_pred HHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECC
Confidence 99999999999999999999999999998764321 1223578999999999999999999999998888999999999
Q ss_pred ccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
.....+...+..+++|+|+||++|.+++......+.++++||+||||+|++++|...+..++..+ ++.|++++|||+++
T Consensus 234 ~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~ 312 (518)
T PLN00206 234 DAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSP 312 (518)
T ss_pred cchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCH
Confidence 99888888888899999999999999999888889999999999999999999999999999888 57899999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHh-C
Q 013965 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRM-D 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~lVF~~s~~~~~~l~~~L~~-~ 367 (433)
+++.++..++.++..+.++... .....+.+.+..+....+...+.+++..... ..++||||+++..|+.++..|.. .
T Consensus 313 ~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~ 391 (518)
T PLN00206 313 EVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT 391 (518)
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc
Confidence 9999999999999888776654 4455677777777778888888888876433 35899999999999999999975 5
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 368 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+ +++||+||+|.+...|+.+.-+
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGR 458 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999 9999999999999998876554
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-65 Score=454.75 Aligned_cols=369 Identities=40% Similarity=0.630 Sum_probs=342.5
Q ss_pred ccccccChhhccCCHHHHHHHHHhcCceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEE
Q 013965 61 KNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLI 140 (433)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~l 140 (433)
+..|..+.-+..||+++-+..+++..|.++|+++|.|+.+|.++.+|..+++.|++.|+.+|||+|.+.+|.+++|+|++
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 34566677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCchhHHHHHHHHHHHhcCC---CCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC------CCceEEEEECCcc
Q 013965 141 GIAETGSGKTLAYLLPAIVHVNAQP---FLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS------SKIKSTCIYGGVP 211 (433)
Q Consensus 141 v~a~TGsGKT~~~~l~~l~~~~~~~---~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~ 211 (433)
.+|-||||||++|.+|++.....+. ....+.||..||+||+|+||.|.++.+..+... ..+++..+.||.+
T Consensus 212 GIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 212 GIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred eEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 9999999999999999988776543 235667999999999999999999888776432 3478899999999
Q ss_pred ChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHH
Q 013965 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEV 291 (433)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 291 (433)
...+...++.+.+|+|+||++|.+++.....+|.-++++++||||||.|+||+..++.++..++..+|+++||||+|..+
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KI 371 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKI 371 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCce
Q 013965 292 EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPA 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 371 (433)
+.+++.-+..|+.++++... .++.++.|.++++.++.|+..|++.|++. ..++||||..+.+++.++++|--.|..+
T Consensus 372 Q~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEYLLlKGVEa 448 (610)
T KOG0341|consen 372 QNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEYLLLKGVEA 448 (610)
T ss_pred HHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHHHHHHcccee
Confidence 99999999999999999877 77788889999999999999999999874 4689999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 372 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 372 ~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+.+||+.++++|...++.|+.|+.+||||||+++.|+|+ +.+|||||+|..+.-|+-+.-+
T Consensus 449 vaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 449 VAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred EEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999 9999999999999888755443
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-62 Score=480.72 Aligned_cols=328 Identities=41% Similarity=0.646 Sum_probs=302.5
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
..|+++++++.+++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|++.++.... ... ...+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~-~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERK-YVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccC-CCceEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999976421 111 1119999
Q ss_pred ecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
+||||||.|+++++.+++... ++++.+++||.+...+...+..+++|+|+||+||++++....+++..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999998999999999999999999989999999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCc-ccccceeeeeeccChhH-HHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQ-KYNKLV 335 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~ 335 (433)
|+++||...+..|+..+++++|+++||||+|..+..+++.++.+|..+.+..... .....+.|.+..+...+ |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888774432 36778888888887765 999999
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCe
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CAC 413 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~ 413 (433)
.++..... .++||||+|+..|+.++..|...|+.+..+||+|++++|.++++.|++|+.+||||||+++||||| +.+
T Consensus 266 ~ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCC-CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 99987543 479999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcCCCcccccccCC
Q 013965 414 VIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 414 Vi~~d~p~~~~~~l~~~ 430 (433)
|||||+|.+...|+-+-
T Consensus 345 VinyD~p~~~e~yvHRi 361 (513)
T COG0513 345 VINYDLPLDPEDYVHRI 361 (513)
T ss_pred eEEccCCCCHHHheecc
Confidence 99999999999998654
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-62 Score=488.84 Aligned_cols=377 Identities=44% Similarity=0.744 Sum_probs=357.7
Q ss_pred CCCCCCccccccccChhhccCCHHHHHHHHHhcC-ceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHH
Q 013965 53 LDGLTPFEKNFYVESPSVAAMSEREVEEYRQQRE-ITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWP 131 (433)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~ 131 (433)
.....+|.++||.+.+++..|+..+++.++.... |.+.+...|+|+.+|.+.+++..++..++++||..|+|||.+|||
T Consensus 318 ~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP 397 (997)
T KOG0334|consen 318 KISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIP 397 (997)
T ss_pred cccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcc
Confidence 4567889999999999999999999999999977 999999999999999999999999999999999999999999999
Q ss_pred hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 013965 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 211 (433)
+++.|+|||.+|.||||||++|++|++.|+..++....++||.+||++|||+|+.|+.+++.+|...++++++++||+..
T Consensus 398 ~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~ 477 (997)
T KOG0334|consen 398 AIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSG 477 (997)
T ss_pred hhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHhhcCCcEEEeChHHHHHHHHcCC---cccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
..+++.++.+++.|+|||||++++++-... .++.++.++|+||||+|++++|.+++..|+..+++++|++++|||+|
T Consensus 478 ~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 478 ISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred HHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhh
Confidence 999999999999999999999999886543 35677779999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC
Q 013965 289 KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD 367 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 367 (433)
..++.+++..+..|+.++++... .+...+.+.+.++. +.+|+..|+++|.......++||||...+.|+.+.+.|.+.
T Consensus 558 r~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a 636 (997)
T KOG0334|consen 558 RSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA 636 (997)
T ss_pred HHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc
Confidence 99999999999999998888554 78888999988888 99999999999999888899999999999999999999999
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 368 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
|+.|..+||+.++.+|+.++++|+++...+||||+++++|+|+ ...|||||+|+.+..|.=++
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 99999999999988776443
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-61 Score=410.14 Aligned_cols=331 Identities=32% Similarity=0.542 Sum_probs=305.8
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 013965 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (433)
Q Consensus 93 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (433)
...+++.+|++++|.+++++.++..||++|+.+|+.|++.+++|+|++++|+.|+|||.+|.+.++..+.-.. +.
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~-----r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV-----RE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc-----ce
Confidence 3455678999999999999999999999999999999999999999999999999999999888887664322 25
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEee
Q 013965 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (433)
Q Consensus 173 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVv 252 (433)
.++||++||||||.|+.+.+..++...++.+..+.||.+..+.++.+..+.+++.+|||++.+++....+..+.+.++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhH-HH
Q 013965 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQ-KY 331 (433)
Q Consensus 253 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~ 331 (433)
||||.|++.+|..++-.+++.++++.|++++|||+|.++.+....|+.+|+.+.+..+++ ..+.+.|++..++.++ |.
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel-tlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL-TLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC-chhhhhhheeeechhhhhH
Confidence 999999999999999999999999999999999999999999999999999999988874 4455667666665555 99
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
+.|.++...+ .-.+++|||+|+..++.|.+.+++.++.+.++||+|++++|++++++|++|+.+|||+||+.+||+|+
T Consensus 255 dtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 255 DTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 9999988765 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcccccccCC
Q 013965 411 -CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~~ 430 (433)
+.+|||||+|++...|+-+.
T Consensus 334 qVslviNYDLP~nre~YIHRI 354 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRI 354 (400)
T ss_pred eeEEEEecCCCccHHHHhhhh
Confidence 99999999999999997554
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-61 Score=445.35 Aligned_cols=354 Identities=40% Similarity=0.640 Sum_probs=322.3
Q ss_pred HHHHHHHhcCce--eccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHH
Q 013965 77 EVEEYRQQREIT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 77 ~~~~~~~~~~i~--~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~ 154 (433)
....+.+.+.+. +.|.+.|.++..|.+..+.+.+..+++..+|..|+|+|+.+||.+..|+++++||+||||||.+|+
T Consensus 50 ~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 50 TGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFL 129 (482)
T ss_pred hhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHH
Confidence 344455555554 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC----CC-CCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeC
Q 013965 155 LPAIVHVNAQPFLA----PG-DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIAT 229 (433)
Q Consensus 155 l~~l~~~~~~~~~~----~~-~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~T 229 (433)
+|++.++....... .+ ..|.+||++|||||+.|++++++++.....+++...||+.+...+.+.+.++|+|+|||
T Consensus 130 iPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaT 209 (482)
T KOG0335|consen 130 IPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVAT 209 (482)
T ss_pred HHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEec
Confidence 99999998764311 11 25999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcC----CCCcEEEEEeccchHHHHHHHHhcCC-Ce
Q 013965 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIR----PDRQTLYWSATWPKEVEHLARQYLYN-PY 303 (433)
Q Consensus 230 p~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~~~~-~~ 303 (433)
||+|.++++...+.|.+++++||||||+|+| ++|++++++|+.... ..+|.++||||+|.++..++..++.+ ++
T Consensus 210 pGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi 289 (482)
T KOG0335|consen 210 PGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYI 289 (482)
T ss_pred CchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccce
Confidence 9999999999999999999999999999999 999999999998874 37899999999999999999999887 77
Q ss_pred EEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc---CCC-----eEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGS-----RILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~-----~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
.+.++... ....++.|.+..+.+.+|...|++++.... ..+ +++|||.+++.|++++.+|...++++..+|
T Consensus 290 ~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIh 368 (482)
T KOG0335|consen 290 FLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIH 368 (482)
T ss_pred EEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeec
Confidence 77776666 778899999999999999999999997544 233 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
|+.++.+|++.++.|++|+..+||||++++||||+ |++||+||+|.+...|+=+--
T Consensus 369 g~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIG 426 (482)
T KOG0335|consen 369 GDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIG 426 (482)
T ss_pred chhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhcc
Confidence 99999999999999999999999999999999999 999999999999999875543
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-61 Score=444.00 Aligned_cols=331 Identities=33% Similarity=0.469 Sum_probs=301.5
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
..+|.+++|+..+++++..+||..|||+|..+||.++-|+|++.||.||||||.+|++|+|.+++-.|.. -...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999987642 33678999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-CcccccceeEeeccch
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEAD 256 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvDEah 256 (433)
++|||+|+.|++...++++....+.+.++.||.+...|...++..+||+|+|||+|++++.+. .+++.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 999999999999999999999999999999999999999999999999999999999999875 4679999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeecc---ChhHHHHH
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---SESQKYNK 333 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~~ 333 (433)
||++.+|..++..|+..++.++|+++||||++.++.+++.-.+..|+.+.+.... .....+.|.+.-+ .+.++...
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999988776 4455555554422 34456666
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--c
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--C 411 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~ 411 (433)
|..++.... ..++|||+.|++.|..+.-+|--.|+.+.-+||.++|.+|.+.++.|++++++||||||+++||||| +
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 666776654 4579999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CeEEEEcCCCcccccccCCCC
Q 013965 412 ACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 412 ~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
.+||||++|.+...|+-+.-+
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGR 516 (691)
T ss_pred eEEEeccCchhHHHHHHHhhh
Confidence 999999999999999866543
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-58 Score=447.51 Aligned_cols=333 Identities=35% Similarity=0.502 Sum_probs=299.6
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC--CCCCCCEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIV 175 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~~ 175 (433)
-.+|++++|++.+++++.++||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+.. ....++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4689999999999999999999999999999999999999999999999999999999999988764421 11236899
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEa 255 (433)
|||+||++||.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999999888888888888999999999999999988888999999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCC--CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHH
Q 013965 256 DRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (433)
Q Consensus 256 h~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (433)
|++++++|...+..++..++. .++.+++|||++..+..++..++.+|..+.+.... .....+.+.+......+|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHH
Confidence 999999999999999998874 56789999999999999999999999887765544 344556666666677788888
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--c
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--C 411 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~ 411 (433)
|..++... ...++||||++++.|+.++..|...++.+..+||+|++.+|..++++|++|+.+|||||+++++|||+ +
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 88888654 45689999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CeEEEEcCCCcccccccCCCC
Q 013965 412 ACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 412 ~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
++||+||+|.+...|+.+.-+
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR 345 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGR 345 (423)
T ss_pred CEEEEeCCCCchhheEecccc
Confidence 999999999999999887654
No 15
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-59 Score=431.92 Aligned_cols=334 Identities=32% Similarity=0.482 Sum_probs=307.7
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEE
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 175 (433)
..+..|.+++|+...++.|++.+|..+|.+|+++||.++.|+|++..|.||||||+||++|+|.++....| ...+|.-+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCcee
Confidence 34578999999999999999999999999999999999999999999999999999999999999987655 55668999
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC-cccccceeEeecc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 254 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~lVvDE 254 (433)
|||+||||||.|+++.+.+.+....+.+..+.||.+...+...+ ..++|+|||||||++++.... ++..++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 459999999999999987754 4678899999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCC-cccccceeeeeeccChhHHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD-LKANHAIRQHVDIVSESQKYNK 333 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~ 333 (433)
||++++|||...+..|+..+++.+|+++||||....+.++++-.+.+|..+.+.... ...+.++.|.+.++...+|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 999999999999999999999999999999999999999999999999999887444 5778889999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
|..+|+.+. ..++|||+.|.+++..+++.+++. |+++..+||.|+|..|.+++++|...+..||+|||+++||||+
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 999999874 468999999999999999999864 8999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcccccccCCCC
Q 013965 411 -CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
++.||.+|||.++..|+-+.-+
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhh
Confidence 9999999999999999866543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-57 Score=448.02 Aligned_cols=332 Identities=36% Similarity=0.596 Sum_probs=297.7
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC-CCCCCCEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 177 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~li 177 (433)
++|++++|++.+++.|.++||..|+|+|.++||.++.++|++++||||+|||++|++|++..+...... .....+++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 368999999999999999999999999999999999999999999999999999999999998654321 1123468999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
|+||++||.|+.+.+..+....++++..++|+.+...+...+..+++|+|+||++|.+++......++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999998889999999999998888888888999999999999999988888899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (433)
+++++|...++.++..++...|++++|||+++++..++..++.+|..+.+.... .....+.+.+..++...+...+..+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877665443 3445667777777777777666666
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEE
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVI 415 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi 415 (433)
+... ...++||||++++.++.+++.|...++.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+ +++||
T Consensus 240 ~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 240 IGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 6543 44689999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEcCCCcccccccCCCC
Q 013965 416 IVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 416 ~~d~p~~~~~~l~~~~~ 432 (433)
+||+|.+...|+.+.-+
T Consensus 319 ~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 319 NYELPNVPEDYVHRIGR 335 (456)
T ss_pred EeCCCCCHHHhhhhccc
Confidence 99999999999876644
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-57 Score=453.61 Aligned_cols=333 Identities=36% Similarity=0.553 Sum_probs=298.1
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC--CCCCCCEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIV 175 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~~ 175 (433)
..+|++++|++.+++.|.++||..|+|+|.++||.+++|+|++++||||||||++|++|++..+...+.. ....++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999988754321 12235899
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-CcccccceeEeecc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDE 254 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvDE 254 (433)
|||+||++|+.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|++++... ...+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999988888888888999999999999998765 35688899999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCC--CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 332 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (433)
||+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.... .....+.+.+......+|..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHH
Confidence 9999999999999999998876 78999999999999999999999988777665544 34455677777777888888
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
.+..++... ...++||||++++.|+.+++.|...++.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+
T Consensus 247 ~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 888887653 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCCcccccccCCCC
Q 013965 411 CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 ~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++||+||+|.++..|+.+.-+
T Consensus 326 V~~VInyd~P~s~~~yvqRiGR 347 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGR 347 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcc
Confidence 9999999999999999877644
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-57 Score=446.78 Aligned_cols=326 Identities=37% Similarity=0.564 Sum_probs=298.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
.+|++++|++.+++++.++||..|+|+|.++||.++.|+|++++||||||||++|++|++.++.... ..+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999886432 25689999
Q ss_pred ecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987654 6899999999999888888889999999999999999998888899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (433)
|++++|...+..++..+++.+|++++|||+|+.+..++..++.+|..+.+.... ....+.+.+..+...+|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776543 334467777777777888888888
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEE
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVI 415 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi 415 (433)
+... ...++||||++++.|+.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+ +++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 8764 44689999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEcCCCcccccccCCCC
Q 013965 416 IVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 416 ~~d~p~~~~~~l~~~~~ 432 (433)
++|+|.+...|+.+.-+
T Consensus 316 ~~d~p~~~~~yiqR~GR 332 (460)
T PRK11776 316 NYELARDPEVHVHRIGR 332 (460)
T ss_pred EecCCCCHhHhhhhccc
Confidence 99999999999877654
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.4e-57 Score=452.88 Aligned_cols=328 Identities=36% Similarity=0.556 Sum_probs=298.2
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
..+|.+++|++.++++|.++||.+|+|+|.++||.++.++|+|++||||+|||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887542 23679999
Q ss_pred EecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 178 LAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
|+||++||.|+++++.++.... ++++..++|+.+...+...+..+++|+|+||++|++++......++++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999987654 789999999998888888888899999999999999999888889999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
.|++++|...+..++..++...|+++||||+|+.+..+++.++.+|..+.+.... .....+.+.+..+....|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888776554 344456666666777788888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
++... ...++||||+|+..++.+++.|...++.+..+||+|++.+|++++++|++|+.+|||||+++++|||+ +++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88754 44689999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCcccccccCCCC
Q 013965 415 IIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~~~ 432 (433)
|+||+|.+...|+.+.-+
T Consensus 318 I~~d~P~~~e~yvqRiGR 335 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGR 335 (629)
T ss_pred EEeCCCCCHHHHHHHhcc
Confidence 999999999999876543
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-58 Score=404.62 Aligned_cols=329 Identities=33% Similarity=0.447 Sum_probs=299.3
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
...|+.+++++++.+.++.+|+.+|||+|..+||.++.|+||+.+|.||||||.+|.+|+|..+...+. +..+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~-----giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY-----GIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC-----cceEEE
Confidence 467999999999999999999999999999999999999999999999999999999999999987653 889999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC----cccccceeEeec
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLD 253 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~~~~lVvD 253 (433)
++||||||.|+.+.|..++...++++.+++||++.-.+...+...++++|+|||++.+++..+. ..++++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999988762 247889999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEe-CCCCcccccceeeeeeccChhHHHH
Q 013965 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII-GSPDLKANHAIRQHVDIVSESQKYN 332 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (433)
|||++++..|-..++.+++.++..+|.++||||+.+.+.++.......++.+.. ..++....+.+.+.+..++...|..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 999999999999999999999999999999999988877766554444322222 2244567778888888999999999
Q ss_pred HHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 333 KLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 333 ~l~~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
.|..+|..... .+.++||+++..+|+.|+..|+..++.+..+||.|+|.+|...+.+|+++..+||||||+++||+||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999987655 6689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cCeEEEEcCCCcccccccCCC
Q 013965 411 --CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 411 --~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
++.|||+|+|.+...|+-+.-
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvG 343 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVG 343 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhc
Confidence 999999999999999876543
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-57 Score=416.49 Aligned_cols=336 Identities=33% Similarity=0.476 Sum_probs=305.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
....|++..|++..++++.++||..+|++|+.+++.++.|+|+++.|.||+|||+||++|+++.+...++... .+..+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3456888999999999999999999999999999999999999999999999999999999999987765443 588999
Q ss_pred EEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeecc
Q 013965 177 VLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDE 254 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDE 254 (433)
|||||||||.|++.+++++.... ++.+..+.||++.......+..+++|+|+|||+|++++++... ..++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999988877 8999999999999999999999999999999999999998654 456678999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCC-CeEEEeCCCC-cccccceeeeeeccChhHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPD-LKANHAIRQHVDIVSESQKYN 332 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~ 332 (433)
||+++++||+..+++|+..++..+|.++||||.+++++++++..+.. +..+...... ......+.|.+.+++...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999987765 6666554433 244566778788888888889
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
.+..+|++.....++||||+|...+..+++.|+...++|..+||+++|..|..+..+|.+.+.-||||||+++||+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 999999988777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCCcccccccCCCCC
Q 013965 411 CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 411 ~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
++.||.||+|.+...|+=++-+|
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999999998776554
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-55 Score=431.06 Aligned_cols=330 Identities=32% Similarity=0.504 Sum_probs=292.7
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 179 (433)
+|+++++++.+++.+.++||.+|+++|.++|+.+++|+|++++||||+|||++|++|++.++...+. .....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999875432 222357899999
Q ss_pred cCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 180 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||+||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999999888888888889999999999999999888889999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEEeccch-HHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC-hhHHHHHHHHH
Q 013965 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKL 337 (433)
Q Consensus 260 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 337 (433)
+++|...+..+...++...|+++||||++. .+..+...++.++..+...... .....+.+.+.... ...+...|..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999985 5788888888888877665443 33344555554444 45666666666
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEE
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVI 415 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi 415 (433)
+.. ....++||||+++++|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+ +++||
T Consensus 240 ~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 240 LKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred Hhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 654 245689999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEcCCCcccccccCCCC
Q 013965 416 IVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 416 ~~d~p~~~~~~l~~~~~ 432 (433)
+||+|.+...|+.+.-+
T Consensus 319 ~~d~p~s~~~yiqr~GR 335 (434)
T PRK11192 319 NFDMPRSADTYLHRIGR 335 (434)
T ss_pred EECCCCCHHHHhhcccc
Confidence 99999999998877544
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=405.05 Aligned_cols=332 Identities=32% Similarity=0.472 Sum_probs=291.9
Q ss_pred CCCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 99 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
.+|++++ |+++++.++.++||...||+|..+||.++.++|+++.|+||||||+||++|++..+..+....+.....+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566664 66999999999999999999999999999999999999999999999999999998544322222246799
Q ss_pred EEecCHHHHHHHHHHHHHhccC-CCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCc--ccccceeEee
Q 013965 177 VLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVL 252 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lVv 252 (433)
||+|||||+.|+.+.+..|... .++.+.++.||.........+ ..++.|+|+|||+|.++++.... +++.++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999887766 678899999998776665554 45789999999999999988544 4559999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCc-ccccceeeeeeccChhHHH
Q 013965 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL-KANHAIRQHVDIVSESQKY 331 (433)
Q Consensus 253 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 331 (433)
||||+++++||...++.|+..+|.++++=+||||...++.++++..+.+|..+.+..... ..+..+..++..+....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887663 2455677777788999999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCC
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLG 409 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gld 409 (433)
..++++|... ..+++|||++|...++..+..|... ...+..+||.|.+..|..++++|.+....+|+|||+++||||
T Consensus 244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 9999999874 5578999999999999999888653 678899999999999999999999988899999999999999
Q ss_pred c--cCeEEEEcCCCcccccccCCC
Q 013965 410 N--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 410 i--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
| ++.||+||+|.+.+.|.-+.-
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~G 346 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCG 346 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcc
Confidence 9 999999999999998875543
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-58 Score=397.39 Aligned_cols=325 Identities=28% Similarity=0.477 Sum_probs=304.8
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
..|+++.|..+++..+.+.||+.|+|+|.++||.++.|+|+++.|..|+|||.+|.+|+|..+... ....+++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 468889999999999999999999999999999999999999999999999999999999988643 236789999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+||||||.|+.+.++.+++..++++.+.+||++....+..+....+++|+|||+++++..++-..++++.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999888888999999999999999999998889999999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHH
Q 013965 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (433)
++.+|.+.+++++..+++++|++++|||+|-.+..+...++.+|+.+....+ -....+.|++.++.+.+|..-|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999877654 55677889999999999998888888
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE
Q 013965 339 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII 416 (433)
Q Consensus 339 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~ 416 (433)
..+. -.+.||||+|...++.+|..+.+.|+.|..+|+.|.++.|.+++.+|++|.++.|||||.+.||||+ +++|||
T Consensus 318 skLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 7663 4579999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EcCCCcccccccCCC
Q 013965 417 VLCTFVLYLTLGPLS 431 (433)
Q Consensus 417 ~d~p~~~~~~l~~~~ 431 (433)
||+|.+...||-+.-
T Consensus 397 FDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIG 411 (459)
T ss_pred cCCCCCHHHHHHHcc
Confidence 999999999986543
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-56 Score=399.59 Aligned_cols=335 Identities=28% Similarity=0.406 Sum_probs=306.2
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC-CCCCCCEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLV 177 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~li 177 (433)
.+|++++|.+.+++++.+.||.+||-+|+.|||.+++|+|+++.|.||||||.+|++|+++.+.+.... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999876554 3445899999
Q ss_pred EecCHHHHHHHHHHHHHhccCC--CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC-cccccceeEeecc
Q 013965 178 LAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDE 254 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~lVvDE 254 (433)
++||+|||.|++..+.++.... .+++.-+....+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999998876543 356666665665555667778889999999999999999877 5678899999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (433)
||.++..||+..+.++...+++..|.++||||++.++..+.+.++.+|+.+.....+......+.|+...+.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc------------
Q 013965 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD------------ 402 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~------------ 402 (433)
..+++...-.+++|||+|+.+.|..|.-+|.+.|++.++++|.|+...|..+++.|+.|-++|+||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 99998766778999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------ccccCCCc--cCeEEEEcCCCcccccccCCCCC
Q 013965 403 -----------------------VAARGLGN--CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 403 -----------------------~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
-++||||+ +.+|+|||+|.+...|+-+.-+|
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 24689999 99999999999999998665443
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-54 Score=423.96 Aligned_cols=334 Identities=35% Similarity=0.494 Sum_probs=295.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCC--CCCCCE
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA--PGDGPI 174 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~--~~~~~~ 174 (433)
....|.+++|++.+.+.|.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346788999999999999999999999999999999999999999999999999999999999987653211 112578
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
+|||+||++|+.|+.+.+..+....++++..++||.+...+...+. ..++|+|+||++|.+++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999998888899999999988777766664 468999999999999998888889999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCC--CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH
Q 013965 254 EADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 331 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (433)
|||++++++|...++.++..++. +.|++++|||++.++..+++.++.++..+.+.... .....+.+.+......++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHH
Confidence 99999999999999999988854 67999999999999999999999999887665544 3334556666666777788
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
..+..++... ...++||||+++++++.+++.|...++.+..+||++++++|.++++.|++|+++|||||+++++|||+
T Consensus 324 ~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 324 KLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 8887777653 44689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcccccccCCCC
Q 013965 411 -CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++||++|+|.+...|+.+.-+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GR 425 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGR 425 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCc
Confidence 9999999999999999877654
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-54 Score=399.24 Aligned_cols=335 Identities=31% Similarity=0.476 Sum_probs=289.9
Q ss_pred CCCCcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCC-CCCCCCCCEE
Q 013965 98 VKSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIV 175 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~~ 175 (433)
-..|..++|++.+.+.|.. +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+...+ ...+.+|+.+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 3468999999999999984 8999999999999999999999999999999999999999999997654 4567789999
Q ss_pred EEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-CcccccceeEeec
Q 013965 176 LVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 253 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvD 253 (433)
||++||||||.|+++.+.++...+ ++--..+.||.....+...++.|++|+|+|||||++++.+. .+.++++++||+|
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 999999999999999999988775 34456788898888888899999999999999999999874 4578899999999
Q ss_pred cchhhhcCCcHHHHHHHHHhc-------------CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCC----------
Q 013965 254 EADRMLDMGFEPQIKKILSQI-------------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP---------- 310 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~-------------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------- 310 (433)
|||++++.||+..+..|+..+ ++..|.+++|||+...+.+++...+.+|..+..+..
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 999999999999999998766 224788999999999999999999999988762110
Q ss_pred --------------CcccccceeeeeeccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHhC------
Q 013965 311 --------------DLKANHAIRQHVDIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMD------ 367 (433)
Q Consensus 311 --------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~------ 367 (433)
....++.+.|.+.+++..-++..|..+|.+.. ...++|||+.+.+.+++-+..|...
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 02344566777888888888888888876533 3448999999999999999888651
Q ss_pred ----------------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 368 ----------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 368 ----------------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+.++..+||+|.|++|..+++.|...+..||+|||+++||||+ +++||.||+|.+...|+-+
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 2457789999999999999999999999999999999999999 9999999999999999865
Q ss_pred CCC
Q 013965 430 LSF 432 (433)
Q Consensus 430 ~~~ 432 (433)
.-+
T Consensus 535 vGR 537 (708)
T KOG0348|consen 535 VGR 537 (708)
T ss_pred hhh
Confidence 443
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.5e-52 Score=405.11 Aligned_cols=328 Identities=30% Similarity=0.518 Sum_probs=288.9
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
..+|+++++++.+.+++.+.||..|+|+|.++|+.+++++|++++||||||||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887532 12678999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
++||++|+.|+.+.+..++....+.+..+.|+.........+..+++|+|+||++|.+++......++++++||+||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988888888889999887777777788899999999999999988778899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC-hhHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVK 336 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~ 336 (433)
+++.+|...+..++..++++.|++++|||+|++...+...++.++..+.+..... ....+.+.+.... ...+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888776655442 2233444444333 3445666666
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
++... ...++||||+++++++.+++.|...++.+..+||++++.+|..++++|++|+.+|||||+++++|+|+ +++|
T Consensus 261 ~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 66543 45689999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCcccccccCCCC
Q 013965 415 IIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~~~ 432 (433)
|++|+|.+...|+.+.-+
T Consensus 340 I~~~~p~s~~~y~qr~GR 357 (401)
T PTZ00424 340 INYDLPASPENYIHRIGR 357 (401)
T ss_pred EEECCCCCHHHEeecccc
Confidence 999999999999876544
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-52 Score=375.03 Aligned_cols=330 Identities=33% Similarity=0.489 Sum_probs=310.8
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
.-.|+.++|+..+++++.+.||..|+|+|++.+|.++++++++..+-||||||.||++|+++++.... ..|.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999998753 34789999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
+.|||+|+.|..+.++.++...++++++++|+....++...+..++|||++||+++.++.-...+.|+.+.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999988777778899999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (433)
++.+||.+++.+++..++.++|+++||||+|..+-.+++.-+.+|..+....+. .....++..+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998866554 6677777788888999999999999
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEE
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVI 415 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi 415 (433)
+......++++|||.|+.+++.+...|+..|+.+..++|.|++..|..-+.+|..++..+||.|++++||+|| .+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 9988777799999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEcCCCcccccccCCCC
Q 013965 416 IVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 416 ~~d~p~~~~~~l~~~~~ 432 (433)
|||+|..-.+|+=++++
T Consensus 335 nyd~p~~~klFvhRVgr 351 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGR 351 (529)
T ss_pred cccCCCCCceEEEEecc
Confidence 99999999999877664
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-53 Score=391.61 Aligned_cols=335 Identities=32% Similarity=0.443 Sum_probs=271.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCC-------
Q 013965 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPF------- 166 (433)
Q Consensus 95 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~------- 166 (433)
+..+..|..+.+|..++.+|..+||..||++|..++|.+..| .|++..|.||||||+||-||++..+.+...
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 445778999999999999999999999999999999999999 799999999999999999999995544221
Q ss_pred -CCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc---
Q 013965 167 -LAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--- 242 (433)
Q Consensus 167 -~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--- 242 (433)
......+.+||++||||||.|+.+.+..+....++++..++||.....|.+.+...++|||+|||||..++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 1111234599999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccccceeEeeccchhhhcCCcHHHHHHHHHhcC-----CCCcEEEEEeccchHH---------------------HHHHH
Q 013965 243 NLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKEV---------------------EHLAR 296 (433)
Q Consensus 243 ~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~~---------------------~~~~~ 296 (433)
+++++.++|+||+|||++.|....+.+++..+. +.+|++.||||+.-.. +.+.+
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 567889999999999999998888888887664 5789999999984322 22222
Q ss_pred H--hcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 013965 297 Q--YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (433)
Q Consensus 297 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 374 (433)
. +...|..+...... .....+......|...+|...|..+|.. ..+++|||||+++.+..|+-+|...++....+
T Consensus 417 ~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 2 12233322222211 2222222222223333333333333332 34689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 375 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 375 h~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
|+.|.|.+|.+.+++|++....||||||+++||||| +.|||||..|.+...|+-+--+
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGR 553 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGR 553 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccc
Confidence 999999999999999999999999999999999999 9999999999999999865433
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=357.81 Aligned_cols=319 Identities=27% Similarity=0.434 Sum_probs=282.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCC
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 173 (433)
-.+.+|+++.|.|++++.+..++|..|+.+|..|+|.++.. ++++.++..|+|||.||.+.+|.++...- .-|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-----~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-----VVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc-----cCC
Confidence 45788999999999999999999999999999999999974 89999999999999999999999886532 268
Q ss_pred EEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc-CCcccccceeEee
Q 013965 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVL 252 (433)
Q Consensus 174 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lVv 252 (433)
.++||+|||+||.|+-+.+.+.++..++......-+.... +--.-..+|+|+||+.+.+++.. ....++.+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc---cCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 8999999999999999999999998887777666554111 11111358999999999999887 6677899999999
Q ss_pred ccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH
Q 013965 253 DEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 331 (433)
Q Consensus 253 DEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (433)
||||.|++. ||..+-..|...++++.|+++||||+...+..++.....++..+.+...++.....-+.++.+..+.+|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 999988764 6999999999999999999999999999999999999999999999998877766666666777888999
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
+.|.++.... .-++.||||.|++.|..++..|...|+.+.++||+|..++|..++++|+.|..+|||+|++++||||+
T Consensus 319 ~~l~~lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVNLYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHHHHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 9999966554 45679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcc
Q 013965 411 -CACVIIVLCTFVL 423 (433)
Q Consensus 411 -~~~Vi~~d~p~~~ 423 (433)
+..|||||+|...
T Consensus 398 qVs~VvNydlP~~~ 411 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKY 411 (477)
T ss_pred eEEEEEecCCcccc
Confidence 9999999999743
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-49 Score=356.11 Aligned_cols=324 Identities=31% Similarity=0.505 Sum_probs=295.7
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+.+|++++|++.+++.++..||.+|+.+|+.||..+..|.|+++++++|+|||.+|.++++..+... .+...+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999999999987432 23667999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
++|+|+||.|+++....++...+.++..+.||.....+...+ ...++|+++||+++.+++....+....+.++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999999998877554444 4468999999999999999988878889999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
.|+..+|..++..++..++++.|++++|||.|.++....+.++.+|..+.+...++. ...+.|.+..+...+|...|.+
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999888854 5666677766677779999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
+.. .-.+.+|||++++.++.+...|...++.+.++|++|.+.+|+.++++|+.|..+|||+|+.+++|+|+ +..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 888 33568999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCcccccccCC
Q 013965 415 IIVLCTFVLYLTLGPL 430 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~ 430 (433)
||||+|.....|+=+.
T Consensus 336 inydlP~~~~~yihR~ 351 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRI 351 (397)
T ss_pred eeeccccchhhhhhhc
Confidence 9999999888886443
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.1e-48 Score=395.87 Aligned_cols=313 Identities=19% Similarity=0.235 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH
Q 013965 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (433)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 184 (433)
.+++.+.+.|.+.||.+|+++|.++|+.+++|+|+++++|||||||+||++|++..+...+ ++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~------~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP------RATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC------CcEEEEEcChHHH
Confidence 4899999999999999999999999999999999999999999999999999999987542 6799999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC----CcccccceeEeeccchhhhc
Q 013965 185 AVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH----NTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 185 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~~~~lVvDEah~~~~ 260 (433)
+.|+.+.++++. ..++++..+.|+++. .+...+..+++|+|+||++|...+... ...++++++||+||||++.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 446888887777764 444566778999999999987533221 12378899999999999876
Q ss_pred CCcHHHHHHHHHh-------cCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeecc--------
Q 013965 261 MGFEPQIKKILSQ-------IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV-------- 325 (433)
Q Consensus 261 ~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 325 (433)
. |+..+..++.. .+.++|++++|||+++..+ +++.++..+..+. .... .........+...
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccc
Confidence 3 77766555444 3567899999999987754 6777787776543 2222 1111111111100
Q ss_pred --------ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHH
Q 013965 326 --------SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSE 389 (433)
Q Consensus 326 --------~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~r~~~~~~ 389 (433)
...++...+..++. .+.++||||+|++.|+.++..|+.. +..+..+||++++++|.+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 01234444444443 3578999999999999999988753 5678899999999999999999
Q ss_pred HhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 390 FKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 390 f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
|++|+.++||||+++++|||+ +++||++|+|.+...|+.+.-+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGR 369 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGR 369 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccc
Confidence 999999999999999999999 9999999999999999876544
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-49 Score=368.08 Aligned_cols=349 Identities=31% Similarity=0.416 Sum_probs=301.2
Q ss_pred HHHHhcCceeccCCCCCCCCCCcCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHH
Q 013965 80 EYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 80 ~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l 155 (433)
..++.+.+.+.|.++|.|+.+|.++ ...+.++.++...+|..|+|+|.+|+|.++.+++++.|+|||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 4455678899999999999999984 588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc--cCCCceEEEEECCccCh-HhHHHhhcCCcEEEeChHH
Q 013965 156 PAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG--ASSKIKSTCIYGGVPKG-PQVRDLQKGVEIVIATPGR 232 (433)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~Iiv~Tp~~ 232 (433)
|++.++..........|-+++|+.|||+||.|++.++.++. ...+.++..+....... .........++|++.||-+
T Consensus 193 Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 193 PILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 99999987543334458899999999999999999999998 66666665554432222 2222233468999999999
Q ss_pred HHHHHHcCC--cccccceeEeeccchhhhcC-CcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 233 LIDMLESHN--TNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 233 l~~~l~~~~--~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
+...+.... +.+..+.++|+||||++.+. .|..++..|+..+ .++..+-+||||++..++++++....++..+.++
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg 352 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG 352 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe
Confidence 999998866 57899999999999999998 8999999998766 3677888999999999999999999999999998
Q ss_pred CCCcccccceee-eeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH-HhCCCceEEEcCCCCHHHHHHH
Q 013965 309 SPDLKANHAIRQ-HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL-RMDGWPALSIHGDKSQAERDWV 386 (433)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~lh~~~~~~~r~~~ 386 (433)
..+.. ...+.| .+....+..|...+.+++... -..++|||+++.+.|.+|...| .-.++.+.++||..++.+|+++
T Consensus 353 ~~~sa-~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 353 LRNSA-NETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred cchhH-hhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHH
Confidence 88744 445554 445567788999999999876 3468999999999999999999 7778999999999999999999
Q ss_pred HHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 387 LSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 387 ~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
+++|+.|+++|||||++++||+|+ +++|||||+|.+...|+=+.
T Consensus 431 ~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrI 476 (593)
T KOG0344|consen 431 MERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRI 476 (593)
T ss_pred HHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHh
Confidence 999999999999999999999999 99999999999998887543
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.1e-46 Score=378.07 Aligned_cols=309 Identities=21% Similarity=0.228 Sum_probs=241.1
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 104 VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 104 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
++....+...++. +|+..++|+|.++|+.++.|+|+++++|||+|||+||++|++.. +..+|||+|++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLi 510 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 510 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHH
Confidence 4455566666654 79999999999999999999999999999999999999999863 45799999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh------cCCcEEEeChHHHHH--HHHcC---CcccccceeEe
Q 013965 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ------KGVEIVIATPGRLID--MLESH---NTNLRRVTYLV 251 (433)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Iiv~Tp~~l~~--~l~~~---~~~l~~~~~lV 251 (433)
+|+.++...+... ++++..+.++.....+...+. ..++|+|+||++|.. .+... ......+.+||
T Consensus 511 SLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 511 SLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 9998766666553 588888998887665544433 468999999999852 22211 11234589999
Q ss_pred eccchhhhcCC--cHHHHHHH--HHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccCh
Q 013965 252 LDEADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (433)
Q Consensus 252 vDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (433)
|||||++++|| |++.++.+ +....++.+++++|||++..+...+...+.......+.... ...++...+.. ..
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf--~RpNL~y~Vv~-k~ 663 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF--NRPNLWYSVVP-KT 663 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc--CccceEEEEec-cc
Confidence 99999999998 88888764 55556789999999999999887666655433222222211 11223222221 22
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccC
Q 013965 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 407 (433)
......+.+++.....+.+.||||.++++|+.++..|...|+.+..+||+|++++|..++++|.+|+++|||||+++++|
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 22345666666654445689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc--cCeEEEEcCCCcccccccCC
Q 013965 408 LGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 408 ldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
||+ +++|||||+|.++..|+...
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQri 768 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQEC 768 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhh
Confidence 999 99999999999999998654
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.2e-47 Score=356.29 Aligned_cols=330 Identities=27% Similarity=0.405 Sum_probs=293.5
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 013965 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (433)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (433)
+..+.....|+++.|...++..|+..+|..|+++|..|||+++.+-|+||++..|+|||++|.+.++..+..+ ..
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~ 92 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SS 92 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cC
Confidence 3456667789999999999999999999999999999999999999999999999999999998888877543 23
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccC-CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGAS-SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
.++++||+||||+|.|+.+.+.+++.. .+.++.+..||+.......++ +.++|+|+||||+.+++..+.++...++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEE
Confidence 788999999999999999999999875 489999999999877665554 458999999999999999999999999999
Q ss_pred eeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh-
Q 013965 251 VLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES- 328 (433)
Q Consensus 251 VvDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (433)
|+||||.+++. .|..++..|+..++..+|++.+|||.|..+..++..++.+|..+.....+ .....++|++..++..
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCc
Confidence 99999999984 49999999999999999999999999999999999999999998887776 4556677777665432
Q ss_pred -------HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc
Q 013965 329 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (433)
Q Consensus 329 -------~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT 401 (433)
.|.+.|-.++..+ +-.+.||||+....|+-++..|...|+.|.++.|.|++.+|..+++.++.-..+|||+|
T Consensus 251 nsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 3566666666654 44579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 402 DVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 402 ~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
|..+||||- ++.|||+|.|.+-.-|+-+
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HR 359 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHR 359 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHH
Confidence 999999999 9999999999998887643
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-45 Score=360.61 Aligned_cols=295 Identities=24% Similarity=0.298 Sum_probs=231.5
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999999853 456999999999999999988875
Q ss_pred ccCCCceEEEEECCccChHhHH---Hh-hcCCcEEEeChHHHHH---HHHcCCcccccceeEeeccchhhhcCC--cHHH
Q 013965 196 GASSKIKSTCIYGGVPKGPQVR---DL-QKGVEIVIATPGRLID---MLESHNTNLRRVTYLVLDEADRMLDMG--FEPQ 266 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~---~l~~~~~~l~~~~~lVvDEah~~~~~~--~~~~ 266 (433)
+ +.+..+.++....++.. .+ ....+|+++||+++.. ++.. .....++++|||||||++++|+ |++.
T Consensus 75 g----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccccccHHH
Confidence 3 66777777665443322 22 2358999999999753 2211 1146789999999999999987 7777
Q ss_pred HHHH--HHhcCCCCcEEEEEeccchHHHHHHHHhcC--CCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc
Q 013965 267 IKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYLY--NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (433)
Q Consensus 267 ~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (433)
+..+ +....++.+++++|||+++.+.......+. ++..+.. ... ..++...+.. ........+.+++....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD---RPNLYYEVRR-KTPKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC---CCCcEEEEEe-CCccHHHHHHHHHHHhc
Confidence 7665 334457889999999999988766655543 3433322 111 1222222221 12245566777776555
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCC
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCT 420 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p 420 (433)
.+.++||||+++++|+.++..|+..|+.+..+||+|++++|..++++|++|+.+|||||+++++|||+ +++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 66678999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CcccccccCCC
Q 013965 421 FVLYLTLGPLS 431 (433)
Q Consensus 421 ~~~~~~l~~~~ 431 (433)
.++..|+...-
T Consensus 305 ~s~~~y~Qr~G 315 (470)
T TIGR00614 305 KSMESYYQESG 315 (470)
T ss_pred CCHHHHHhhhc
Confidence 99998876543
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-45 Score=337.33 Aligned_cols=319 Identities=25% Similarity=0.362 Sum_probs=263.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhHhc---------CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 110 VMQEISKAGFFEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~~l~---------g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
+...+.++++....|+|..++|+++. .+|+.|.||||||||++|.||+++.+..++. +..++|||+|
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavVivP 223 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVVIVP 223 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEEEee
Confidence 44558899999999999999999863 5799999999999999999999999887542 3578999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcC-----CcEEEeChHHHHHHHHc-CCcccccceeEeecc
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-----VEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lVvDE 254 (433)
|++|+.|++..|.++....++.++.+.|..+...+.+.+... .||+|+|||||++++.+ ..+.|++++|+||||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEech
Confidence 999999999999999999999999999998888877777652 48999999999999995 567899999999999
Q ss_pred chhhhcCCcHHHHHHHHHhc----------------------------------CCCCcEEEEEeccchHHHHHHHHhcC
Q 013965 255 ADRMLDMGFEPQIKKILSQI----------------------------------RPDRQTLYWSATWPKEVEHLARQYLY 300 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~----------------------------------~~~~~~l~~SAT~~~~~~~~~~~~~~ 300 (433)
||||++..|...+..+...+ .+..+.+.+|||+..+-..+..--+.
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 99999876655444433222 12345788999998888888777788
Q ss_pred CCeEEEeCC---CCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH----hCCCceEE
Q 013965 301 NPYKVIIGS---PDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALS 373 (433)
Q Consensus 301 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~ 373 (433)
.|....+.. .-...+..+.+.........|...+..++... ...++|+|+++...+..++..|+ +.++.+..
T Consensus 384 ~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~ 462 (620)
T KOG0350|consen 384 IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSE 462 (620)
T ss_pred CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhh
Confidence 885444332 22244555555555666667777787877764 45689999999999999999886 44677788
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCCC
Q 013965 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 374 lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
+.|.++...|.+.+++|..|++.||||+|+++||+|+ +++|||||+|.+...|+-+.-+|
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 9999999999999999999999999999999999999 99999999999999998765544
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.6e-44 Score=373.16 Aligned_cols=323 Identities=21% Similarity=0.219 Sum_probs=242.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC-CCCCCCEEEEEecCHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL-APGDGPIVLVLAPTREL 184 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~~lil~Ptr~L 184 (433)
+++.+.+.+.+ +|..|+|+|.++|+.+++|+|++++||||||||++|++|++.++...... ....++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777666655 78999999999999999999999999999999999999999988753211 11347889999999999
Q ss_pred HHHHHHHHHH-------h----ccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc--ccccceeE
Q 013965 185 AVQIQQESTK-------F----GASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYL 250 (433)
Q Consensus 185 ~~q~~~~~~~-------~----~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~l 250 (433)
++|+++.+.. + +... ++++...+|+++...+...+...++|+||||++|..++.+... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 2 2233 6788999999988877777778899999999999888765433 47889999
Q ss_pred eeccchhhhcCCcHHHHHHHH----HhcCCCCcEEEEEeccchHHHHHHHHhcCC-------CeEEEeCCCCccccccee
Q 013965 251 VLDEADRMLDMGFEPQIKKIL----SQIRPDRQTLYWSATWPKEVEHLARQYLYN-------PYKVIIGSPDLKANHAIR 319 (433)
Q Consensus 251 VvDEah~~~~~~~~~~~~~i~----~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 319 (433)
|+||+|.+.+..++..+...+ ...++..|++++|||+++ .+.++...... +..+..... .....+.
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~ 253 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIK 253 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCC--CccceEE
Confidence 999999999877666555443 333468899999999975 34444433221 122211110 1111111
Q ss_pred ee-----eeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhC------CCceEEEcCCCCHHHHHHHH
Q 013965 320 QH-----VDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVL 387 (433)
Q Consensus 320 ~~-----~~~~~~~~k~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~r~~~~ 387 (433)
.. +...........+...+.. ....+++||||+|++.|+.++..|++. +..+.++||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 0001111222333333333 234578999999999999999999862 46799999999999999999
Q ss_pred HHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 388 SEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 388 ~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+.|++|+.+|||||+++++|||+ +++||+++.|.+...|+++.-+
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGR 380 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGR 380 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhccc
Confidence 99999999999999999999999 9999999999999999987654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.5e-43 Score=355.34 Aligned_cols=301 Identities=21% Similarity=0.277 Sum_probs=231.8
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHH
Q 013965 108 DYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (433)
Q Consensus 108 ~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~ 186 (433)
+...+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 333444443 79999999999999999999999999999999999999999854 346899999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCccChHhHHH---hh-cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC
Q 013965 187 QIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (433)
Q Consensus 187 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~ 262 (433)
|+.+.+..++ +.+..+.++......... +. ...+++++||+++........+...++++|||||||++++|+
T Consensus 80 dqv~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 80 DQVDQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccccc
Confidence 9999988753 666666666554443222 22 357899999999873211112334578999999999999987
Q ss_pred --cHHHHHHH--HHhcCCCCcEEEEEeccchHHHHHHHHhc--CCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 263 --FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 263 --~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
|++.++.+ +....++.+++++|||+++.........+ .+|... ..... ..++. +.......+...+..
T Consensus 156 ~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~--~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIR--YTLVEKFKPLDQLMR 229 (607)
T ss_pred CcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcce--eeeeeccchHHHHHH
Confidence 77777655 33344789999999999988766544443 344332 22211 11222 122223344556666
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
++... .+.++||||+|+++|+.++..|+..++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+ +++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 66543 45789999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCcccccccCC
Q 013965 415 IIVLCTFVLYLTLGPL 430 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~ 430 (433)
|+||+|.++..|+...
T Consensus 309 I~~d~P~s~~~y~Qr~ 324 (607)
T PRK11057 309 VHFDIPRNIESYYQET 324 (607)
T ss_pred EEeCCCCCHHHHHHHh
Confidence 9999999999887654
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-43 Score=365.72 Aligned_cols=302 Identities=21% Similarity=0.280 Sum_probs=231.6
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+.|++++||+.+.+.+.+.||.+|+|+|.++++. +++|+|++++||||||||++|.+|++..+.. +.++||
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~ 72 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALY 72 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEE
Confidence 3578899999999999999999999999999998 7789999999999999999999999998853 668999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
++|+++||.|+++.++++.. .++++..++|+...... ....++|+||||+++..++.+....++++++||+||+|.
T Consensus 73 i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 73 IVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred EeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 99999999999999998753 47899999988765432 234689999999999999887666688999999999999
Q ss_pred hhcCCcHHHHHHHHHhc---CCCCcEEEEEeccchHHHHHHHHhcCCC-------eEEE--eCCCCcccccceeeeeecc
Q 013965 258 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNP-------YKVI--IGSPDLKANHAIRQHVDIV 325 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~ 325 (433)
+.+.+++..++.++..+ .++.|++++|||+++ ..+++.+..... ..+. +..............+...
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~ 227 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVP 227 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCc
Confidence 99988998888876655 578999999999975 344554432211 1110 0000000000000001000
Q ss_pred ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC------------------------------------CC
Q 013965 326 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------------GW 369 (433)
Q Consensus 326 ~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------------~~ 369 (433)
........+.+ ....++++||||+|+++|+.++..|... ..
T Consensus 228 ~~~~~~~~~~~---~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 228 SKDDTLNLVLD---TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred cchHHHHHHHH---HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 11122222222 2335679999999999999998887542 13
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE
Q 013965 370 PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII 416 (433)
Q Consensus 370 ~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~ 416 (433)
.+.++|++|++.+|..+++.|++|.++|||||+++++|+|+ ...||+
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI 352 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVII 352 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEE
Confidence 68899999999999999999999999999999999999999 545554
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-42 Score=352.53 Aligned_cols=293 Identities=21% Similarity=0.264 Sum_probs=233.2
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.+..++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999853 3468999999999999999988863
Q ss_pred cCCCceEEEEECCccChHhHHH----hhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC--cHHHHHHH
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i 270 (433)
+.+..+.++.+....... .....+|+++||+++............++++|||||||++++|+ |++.+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 677777777665543322 23468999999999864332223445679999999999999877 88877766
Q ss_pred HHh--cCCCCcEEEEEeccchHHHHHHHHhcCC--CeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCe
Q 013965 271 LSQ--IRPDRQTLYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSR 346 (433)
Q Consensus 271 ~~~--~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 346 (433)
... .-+..+++++|||++..+.......+.. +..+ .... ...++. +.......+...+.+.+.... +.+
T Consensus 154 ~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~---~r~nl~--~~v~~~~~~~~~l~~~l~~~~-~~~ 226 (591)
T TIGR01389 154 GSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITSF---DRPNLR--FSVVKKNNKQKFLLDYLKKHR-GQS 226 (591)
T ss_pred HHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC---CCCCcE--EEEEeCCCHHHHHHHHHHhcC-CCC
Confidence 432 2345669999999999888776666543 3222 1111 111222 222233456667777776643 578
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCccc
Q 013965 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
+||||+|++.|+.+++.|...++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+ +++||++++|.++.
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~ 306 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLE 306 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred ccccCCC
Q 013965 425 LTLGPLS 431 (433)
Q Consensus 425 ~~l~~~~ 431 (433)
.|+...-
T Consensus 307 ~y~Q~~G 313 (591)
T TIGR01389 307 SYYQEAG 313 (591)
T ss_pred HHhhhhc
Confidence 8876543
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.6e-42 Score=346.99 Aligned_cols=320 Identities=24% Similarity=0.242 Sum_probs=260.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
|++.+.+.++.. |.+|||.|.+|||.+.+|+|++++||||||||+++.+|++..+.........++..+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999988 9999999999999999999999999999999999999999999876433444588999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc--ccccceeEeeccchhhhcCCc
Q 013965 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lVvDEah~~~~~~~ 263 (433)
+++...+..++...++.+.+-+|+++.....+...+.+||+|+||+.|.-++..... .|.++.++||||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999988888899999999999999888766432 588999999999999887665
Q ss_pred HHHHHHHHHh---cCCCCcEEEEEeccchHHHHHHHHhcCC--CeEEEeCCCCcccccceeeeeecc-------ChhHHH
Q 013965 264 EPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIV-------SESQKY 331 (433)
Q Consensus 264 ~~~~~~i~~~---~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~k~ 331 (433)
+.++---++. +.++.|.|++|||.. +.+..++.+... +..+...... ....+.-..... ......
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~--k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAA--KKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccC--CcceEEEEecCCccccccchhHHHH
Confidence 5544433322 223899999999996 455566655554 3333322221 111111111110 112334
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC-CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
..+.+++++ ...+|||+||+..++.++..|++.+ ..+..+||+++.+.|..+.++|++|+.+.+|||+.++-|||+
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 445555544 3479999999999999999999886 899999999999999999999999999999999999999999
Q ss_pred --cCeEEEEcCCCcccccccCCCC
Q 013965 411 --CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 --~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
++.||++.-|.++..++++.-|
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGR 344 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGR 344 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccc
Confidence 9999999999999999887654
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.1e-42 Score=355.20 Aligned_cols=300 Identities=20% Similarity=0.230 Sum_probs=233.4
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
+|+++++++.+.+.+++.||.+|+|+|.++++. +++|+|+++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 577889999999999999999999999999986 78899999999999999999999999887642 5689999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+|+++|+.|+++.+.++. ..++++..++|+.+.... ....++|+|+||+++..++......++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 457899999998765432 2356899999999999988876667899999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccc-eeeeeeccCh-------hHH
Q 013965 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHA-IRQHVDIVSE-------SQK 330 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~k 330 (433)
.+.+++..++.++..+....|++++|||+++ ..+++.++ ....... .......... ..+....... ...
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl-~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWL-NAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh-CCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 9988999999999999999999999999975 45666543 3221110 0000000000 0011111111 111
Q ss_pred HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---------------------------------CCceEEEcCC
Q 013965 331 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSIHGD 377 (433)
Q Consensus 331 ~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lh~~ 377 (433)
...+.+.+ ..++++||||+|++.|+.++..|... ...+.++|++
T Consensus 228 ~~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 228 ESLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 12222333 34678999999999999887666321 2358999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE
Q 013965 378 KSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII 416 (433)
Q Consensus 378 ~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~ 416 (433)
|++++|..+++.|++|.++|||||+++++|+|+ ...||+
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI 344 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVII 344 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEE
Confidence 999999999999999999999999999999999 444444
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.6e-42 Score=345.49 Aligned_cols=294 Identities=22% Similarity=0.234 Sum_probs=228.7
Q ss_pred CCCCCCcHHHHHHHHhHhcCC-cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE-EecCHHHHHHHHHHHHH
Q 013965 117 AGFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV-LAPTRELAVQIQQESTK 194 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~-~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li-l~Ptr~L~~q~~~~~~~ 194 (433)
.||. |+|||.++++.++.|+ ++++++|||||||.++.++.+.. .. ....++.|| ++|||+|+.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5887 9999999999999998 67888999999999766555422 11 112455555 77999999999999999
Q ss_pred hccCC-----------------------CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc---------
Q 013965 195 FGASS-----------------------KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--------- 242 (433)
Q Consensus 195 ~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--------- 242 (433)
++... .+++.+++||.+...+...+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 88644 4889999999999999999999999999995 45544443
Q ss_pred -------ccccceeEeeccchhhhcCCcHHHHHHHHHhc--CCC---CcEEEEEeccchHHHHHHHHhcCCCeEEEeCCC
Q 013965 243 -------NLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RPD---RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (433)
Q Consensus 243 -------~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~~---~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (433)
.+.++++||+|||| ++++|...+..|+..+ ++. +|+++||||++.++..+...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 6889999999999964 332 699999999999888888888877766555443
Q ss_pred CcccccceeeeeeccChhHHHHHHHHHHHh--hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHH----
Q 013965 311 DLKANHAIRQHVDIVSESQKYNKLVKLLED--IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERD---- 384 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~---- 384 (433)
.. ....+.+.+ ......|...+...+.. ...++++||||+|++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223333433 33344444444433322 12456899999999999999999998876 8999999999999
Q ss_pred -HHHHHHhc----CC-------CCEEEEccccccCCCc-cCeEEEEcCCCcccccccC
Q 013965 385 -WVLSEFKA----GK-------SPIMTATDVAARGLGN-CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 385 -~~~~~f~~----g~-------~~iLvaT~~~~~Gldi-~~~Vi~~d~p~~~~~~l~~ 429 (433)
.++++|++ |. .+|||||+++++|||| .++||+...|. ..|+.+
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP~--esyIQR 370 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAPF--ESMQQR 370 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCCH--HHHHHH
Confidence 88999987 44 6799999999999999 99999877763 455544
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8.6e-42 Score=351.43 Aligned_cols=302 Identities=21% Similarity=0.261 Sum_probs=235.2
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 179 (433)
.|++++|++.+++.+.+.+|. ++++|.++++.+.+++++++++|||||||+++.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577889999999999999986 999999999999999999999999999999999999988764 56799999
Q ss_pred cCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 180 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
|+++||.|+++++.++. ..+.++...+|+...... ....++|+|+||+++..++.++...+.++++||+||+|++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999864 457888888887654332 23468999999999999988877778999999999999999
Q ss_pred cCCcHHHHHHHHHh---cCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee-----ccC-hhHH
Q 013965 260 DMGFEPQIKKILSQ---IRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-----IVS-ESQK 330 (433)
Q Consensus 260 ~~~~~~~~~~i~~~---~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~k 330 (433)
+.+++..++.++.. ++++.|++++|||+++ ..++++++...... ... .+..+...+. ... ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~----~~~--r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIK----SNF--RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccC----CCC--CCCCeEEEEEecCeeeecccccc
Confidence 88888888777554 4678999999999975 45566543222111 000 0111110000 010 0001
Q ss_pred HHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhC-------------------------CCceEEEcCCCCHHHHH
Q 013965 331 YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-------------------------GWPALSIHGDKSQAERD 384 (433)
Q Consensus 331 ~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lh~~~~~~~r~ 384 (433)
...+..++.. ...++++||||+++++|+.++..|... ...+..+||+|++++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 1113333433 345679999999999999999888653 12578899999999999
Q ss_pred HHHHHHhcCCCCEEEEccccccCCCc-cCeEEEEcCCC
Q 013965 385 WVLSEFKAGKSPIMTATDVAARGLGN-CACVIIVLCTF 421 (433)
Q Consensus 385 ~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~ 421 (433)
.+++.|++|.++|||||+++++|+|+ ...||+.|.|.
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~ 339 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITR 339 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceE
Confidence 99999999999999999999999999 88888888764
No 47
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-42 Score=291.94 Aligned_cols=291 Identities=27% Similarity=0.443 Sum_probs=258.1
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
.-|.++-|.|++++++...||..|+.+|.++||.+.-|.|++++|..|.|||.+|.++.|+.+.-- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 347778899999999999999999999999999999999999999999999999999999887531 225789999
Q ss_pred ecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
|.|||||-|+.++..+|.... ++++.+.+||.+.......+.+-++|+|+|||+++.+.++..+++++++++|+||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999988887664 5899999999998887788888899999999999999999999999999999999998
Q ss_pred hhcC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 258 MLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 258 ~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
|+.+ +.+..+..|++..+.+.|+++||||++++++..++.++.+|..+.+..+..-.-+.++|++....+.+|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 7653 478889999999999999999999999999999999999999999888777777888899988999999999999
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
+|..+ .-.+++||+.+... | . | ..+ +|||++++||+|| ++.|
T Consensus 277 LLd~L-eFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 277 LLDVL-EFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhhh-hhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceee
Confidence 98775 55789999988654 0 0 3 223 8999999999999 9999
Q ss_pred EEEcCCCcccccccCC
Q 013965 415 IIVLCTFVLYLTLGPL 430 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~ 430 (433)
+|||+|.+.+.||-+.
T Consensus 321 ~NYdmp~~~DtYlHrv 336 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRV 336 (387)
T ss_pred eccCCCCCchHHHHHh
Confidence 9999999999988543
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.2e-40 Score=348.28 Aligned_cols=287 Identities=22% Similarity=0.270 Sum_probs=224.9
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 111 MQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 111 ~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
.+.+++ .|+ +|+++|.+++|.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+.|++
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHH
Confidence 334443 466 8999999999999999999999999999996 55665555433 2788999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCccC-----hHhHHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc---
Q 013965 190 QESTKFGASSKIKSTCIYGGVPK-----GPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD--- 260 (433)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~--- 260 (433)
+.+++++...++.+..++|+... ..+...+. ..++|+|+||++|.+++. .+...++++||+||||++++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999998888888888776542 22233334 358999999999999876 34456799999999999986
Q ss_pred --------CCcH-HHHHHHHHhcCC------------------------CCcEEEEEeccchH-HHHHHHHhcCCCeEEE
Q 013965 261 --------MGFE-PQIKKILSQIRP------------------------DRQTLYWSATWPKE-VEHLARQYLYNPYKVI 306 (433)
Q Consensus 261 --------~~~~-~~~~~i~~~~~~------------------------~~~~l~~SAT~~~~-~~~~~~~~~~~~~~~~ 306 (433)
.||. ..+.+++..++. ..|++++|||+++. +.. .++.++..+.
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~ 295 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFE 295 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEE
Confidence 6784 677777776654 68999999999864 332 2233444455
Q ss_pred eCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHHhCCCceEEEcCCCCHHHH
Q 013965 307 IGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQAER 383 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~~~r 383 (433)
++... ....++.+.+.... ++...|.+++... +.++||||++++. |+.+++.|+..|+++..+||+|
T Consensus 296 v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 296 VGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred ecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 55443 23345555554443 5677777877654 3579999999888 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEE----ccccccCCCc---cCeEEEEcCCC
Q 013965 384 DWVLSEFKAGKSPIMTA----TDVAARGLGN---CACVIIVLCTF 421 (433)
Q Consensus 384 ~~~~~~f~~g~~~iLva----T~~~~~Gldi---~~~Vi~~d~p~ 421 (433)
.+.+++|++|+.+|||| |++++||||+ +++|||||+|.
T Consensus 366 ~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 366 ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 23459999999999999 6999999999 68999999998
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.7e-39 Score=333.58 Aligned_cols=291 Identities=21% Similarity=0.202 Sum_probs=227.1
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 106 FPDYVMQEISK-AGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 106 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
.+..+.+.+.+ .+| +|||+|.+||+.++++ +|++++|+||+|||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 44566666655 577 5999999999999874 799999999999999999999988764 6789999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHH---Hhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeecc
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR---DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDE 254 (433)
+||++||.|+++.++++....++++..++|+....++.. .+.. .++|+|+||.. + .....++++++||+||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDE 581 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeec
Confidence 999999999999999988888899999988776544332 3333 58999999942 2 2356688999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (433)
+|++ ....+..+..++++.|+++||||+.+....++.....++..+...... ...+...+..........
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~~i~~-- 651 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPELVRE-- 651 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHHHHHH--
Confidence 9983 445566677788899999999998776666655555555544332211 112333332222211111
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
.++.....+++++|||+++++++.+++.|++. ++++..+||+|++.+|++++++|++|+.+|||||+++++|||+
T Consensus 652 -~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 652 -AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred -HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 22333445789999999999999999999874 7889999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCC
Q 013965 411 CACVIIVLCTF 421 (433)
Q Consensus 411 ~~~Vi~~d~p~ 421 (433)
+++||+++.|.
T Consensus 731 v~~VIi~~a~~ 741 (926)
T TIGR00580 731 ANTIIIERADK 741 (926)
T ss_pred CCEEEEecCCC
Confidence 99999999976
No 50
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.6e-39 Score=346.41 Aligned_cols=299 Identities=19% Similarity=0.210 Sum_probs=231.8
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHH
Q 013965 109 YVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (433)
Q Consensus 109 ~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q 187 (433)
++.+.+++ .|| +|+++|.++++.+++|+|++++||||+|||++++++++.... ++.++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 45566665 799 699999999999999999999999999999976666654432 26789999999999999
Q ss_pred HHHHHHHhccCC--CceEEEEECCccChHhHH---Hhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc-
Q 013965 188 IQQESTKFGASS--KIKSTCIYGGVPKGPQVR---DLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD- 260 (433)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~- 260 (433)
+++.+..++... ++++..++|+.+..++.. .+.. .++|+|+||++|.+.+... . ..++++||+||||+|++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccc
Confidence 999999987764 467778888887765533 3334 4899999999998876542 1 26799999999999986
Q ss_pred ----------CCcHHHHHH----HHH----------------------hcCCCCc-EEEEEeccchHHHHHHHHhcCCCe
Q 013965 261 ----------MGFEPQIKK----ILS----------------------QIRPDRQ-TLYWSATWPKEVEHLARQYLYNPY 303 (433)
Q Consensus 261 ----------~~~~~~~~~----i~~----------------------~~~~~~~-~l~~SAT~~~~~~~~~~~~~~~~~ 303 (433)
+||.+++.. ++. .++...| ++++|||+++.. ....++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 588888864 322 2234555 567999998531 1123345666
Q ss_pred EEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCccc---HHHHHHHHHhCCCceEEEcCCCCH
Q 013965 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKG---CDQITRQLRMDGWPALSIHGDKSQ 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~lh~~~~~ 380 (433)
.+.++... ....++.+.+.......+ ..+.++++.. +..+||||++++. |+.+++.|+..|+++..+||+
T Consensus 294 ~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66666554 344455555554554444 5677777764 4679999999886 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCCCEEEEc----cccccCCCc---cCeEEEEcCCC---cccccccC
Q 013965 381 AERDWVLSEFKAGKSPIMTAT----DVAARGLGN---CACVIIVLCTF---VLYLTLGP 429 (433)
Q Consensus 381 ~~r~~~~~~f~~g~~~iLvaT----~~~~~Gldi---~~~Vi~~d~p~---~~~~~l~~ 429 (433)
|..++++|++|+.+||||| ++++||||+ +++|||+|+|. ++..|..+
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~ 423 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPT 423 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccc
Confidence 8899999999999999999 599999999 79999999999 77766543
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.9e-39 Score=338.89 Aligned_cols=284 Identities=20% Similarity=0.207 Sum_probs=223.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 109 YVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
...+....++| +||+.|.+||+.++.+ +|++++|+||+|||.+|+.+++..+.. +++++|++||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT~ 659 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 33444456777 7999999999999986 899999999999999999888776543 78899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+||.|+++.+.+.....++++.+++++.+..++...+. ..++|+|+||+.+ . ....+.++++|||||+|++
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc
Confidence 99999999999877777788888888887766654432 3689999999643 2 3456788999999999996
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHH
Q 013965 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLL 338 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 338 (433)
++. ....+..+++++|+++||||+++....++...+.++..+...... ...+...+........ ...++
T Consensus 735 ---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~---k~~il 803 (1147)
T PRK10689 735 ---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVV---REAIL 803 (1147)
T ss_pred ---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHH---HHHHH
Confidence 332 345567788899999999999888888888778888766543221 1223333222222111 12234
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 339 EDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 339 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
.....+++++|||++++.++.+++.|.+. +.++.++||+|++.+|++++++|++|+.+|||||+++++|||+ +++|
T Consensus 804 ~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 44445679999999999999999999886 7889999999999999999999999999999999999999999 9999
Q ss_pred EEE
Q 013965 415 IIV 417 (433)
Q Consensus 415 i~~ 417 (433)
|+.
T Consensus 884 Ii~ 886 (1147)
T PRK10689 884 IIE 886 (1147)
T ss_pred EEe
Confidence 943
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.5e-39 Score=342.25 Aligned_cols=290 Identities=21% Similarity=0.231 Sum_probs=217.1
Q ss_pred EEccCCCchhHHHHHHHHHHHhcCCCC-----CCCCCCEEEEEecCHHHHHHHHHHHHHhc------------cCCCceE
Q 013965 141 GIAETGSGKTLAYLLPAIVHVNAQPFL-----APGDGPIVLVLAPTRELAVQIQQESTKFG------------ASSKIKS 203 (433)
Q Consensus 141 v~a~TGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~~lil~Ptr~L~~q~~~~~~~~~------------~~~~~~~ 203 (433)
|+||||||||++|.+|++..+..++.. ...+++++|||+|+++|++|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 12346899999999999999999886411 1346899
Q ss_pred EEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-CcccccceeEeeccchhhhcCCcH----HHHHHHHHhcCCCC
Q 013965 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADRMLDMGFE----PQIKKILSQIRPDR 278 (433)
Q Consensus 204 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvDEah~~~~~~~~----~~~~~i~~~~~~~~ 278 (433)
...+|+++..++.+.+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++ ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777788999999999999887653 246899999999999999876544 44555555566789
Q ss_pred cEEEEEeccchHHHHHHHHhcCC-CeEEEeCCCCcccccceeeeeeccChh-------------------HH-HHHHHHH
Q 013965 279 QTLYWSATWPKEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVDIVSES-------------------QK-YNKLVKL 337 (433)
Q Consensus 279 ~~l~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~k-~~~l~~~ 337 (433)
|+|++|||+++ .+++++.+... +..+.. ... .....+...+...+.. .. ......+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~-~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPA-MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCC-CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999976 46666544332 444432 211 1122222111111000 00 0011233
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCC---------------------------------CceEEEcCCCCHHHHH
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDG---------------------------------WPALSIHGDKSQAERD 384 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lh~~~~~~~r~ 384 (433)
+.......++||||||++.|+.++..|++.. +.+.+|||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444456789999999999999999987531 1256899999999999
Q ss_pred HHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCCC
Q 013965 385 WVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 385 ~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
.+++.|++|++++||||+++++|||+ +++||+++.|.++..|+.+.-++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCC
Confidence 99999999999999999999999999 99999999999999999876543
No 53
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.4e-38 Score=335.38 Aligned_cols=292 Identities=18% Similarity=0.272 Sum_probs=221.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHH
Q 013965 108 DYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (433)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q 187 (433)
.++.+.+.+.....|+++|..+++.++.|+|++++||||+|||+ |.+|++..+... ++++|||+||++||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHH
Confidence 34555555544558999999999999999999999999999997 677776665432 7899999999999999
Q ss_pred HHHHHHHhccCCCceEE---EEECCccChHhH---HHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 188 IQQESTKFGASSKIKST---CIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
+++.+.+++...++.+. .++|+.+...+. ..+.. +++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 99999999877666544 467877665442 22333 59999999999998876522 1 799999999999998
Q ss_pred -----------CCcHHH-HHHHH----------------------HhcCCCCc--EEEEEec-cchHHHHHHHHhcCCCe
Q 013965 261 -----------MGFEPQ-IKKIL----------------------SQIRPDRQ--TLYWSAT-WPKEVEHLARQYLYNPY 303 (433)
Q Consensus 261 -----------~~~~~~-~~~i~----------------------~~~~~~~~--~l~~SAT-~~~~~~~~~~~~~~~~~ 303 (433)
+||..+ +..++ ..++..+| ++++||| +|..+.. .++.+..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccccc
Confidence 678764 44433 23344555 5678999 5655432 2344554
Q ss_pred EEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCc---ccHHHHHHHHHhCCCceEEEcCCCCH
Q 013965 304 KVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTK---KGCDQITRQLRMDGWPALSIHGDKSQ 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~lh~~~~~ 380 (433)
.+.++... ....++.+.+..... +...|.++++.. +.++||||+++ +.|+.++..|+..|+++..+||++++
T Consensus 291 ~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 291 GFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred ceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 55555443 333455555443332 245567777654 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHHhcCCCCEEEE----ccccccCCCc---cCeEEEEcCCCc
Q 013965 381 AERDWVLSEFKAGKSPIMTA----TDVAARGLGN---CACVIIVLCTFV 422 (433)
Q Consensus 381 ~~r~~~~~~f~~g~~~iLva----T~~~~~Gldi---~~~Vi~~d~p~~ 422 (433)
.++++|++|+.+|||| |++++||||+ +++||+||+|..
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 6899999999999999 5999999999 689999999975
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.4e-39 Score=310.20 Aligned_cols=292 Identities=21% Similarity=0.243 Sum_probs=229.0
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+||..+++-|.++|..+++++|+++.+|||.||++||++|++.. ...+|||+|..+|...+.+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~G 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAAG 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999865 2268999999999999999998876
Q ss_pred cCCCceEEEEECCccChHhHHHh---h-cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC--cHHHHHHH
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKI 270 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i 270 (433)
+.+..+.+..+..+....+ . ...++++-+|++|..-.....+.-.++.++||||||++++|| |++.++.+
T Consensus 82 ----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 82 ----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred ----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 7777777765554443322 2 247999999999863221112224568999999999999998 99999987
Q ss_pred HHh--cCCCCcEEEEEeccchHHHHHHHHhcCCCe-EEEeCCCCcccccceeeeeeccC-hhHHHHHHHHHHHhhcCCCe
Q 013965 271 LSQ--IRPDRQTLYWSATWPKEVEHLARQYLYNPY-KVIIGSPDLKANHAIRQHVDIVS-ESQKYNKLVKLLEDIMDGSR 346 (433)
Q Consensus 271 ~~~--~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~ 346 (433)
-.. .-++.+++.+|||.++.+...+...+.... .+...+.+ ..++...+.... ...+...+.+ ......+.
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~fi~~--~~~~~~~~ 232 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLAFLAT--VLPQLSKS 232 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHHHHHh--hccccCCC
Confidence 432 235889999999999999888777664432 23333321 233333232222 2333332222 11334557
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCccc
Q 013965 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
.||||.|++.++.+++.|...|+.+..+|++|+.++|..+.++|..++.+|+|||.++++|||. +++|||||+|.|+.
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred cccc
Q 013965 425 LTLG 428 (433)
Q Consensus 425 ~~l~ 428 (433)
.|..
T Consensus 313 sYyQ 316 (590)
T COG0514 313 SYYQ 316 (590)
T ss_pred HHHH
Confidence 8863
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.3e-37 Score=316.26 Aligned_cols=290 Identities=20% Similarity=0.241 Sum_probs=216.0
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 108 DYVMQEIS-KAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 108 ~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
..+.+.+. ..+| +||++|.++++.+..+ .+++++||||||||++|++|++..+.. +.+++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEec
Confidence 34444444 4566 6999999999999876 489999999999999999999988754 788999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccChHh---HHHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
|++||.|+++.+++++...++++..++|+...... ...+.. .++|+|+||+.+.+ ...+.+++++|+||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 99999999999999998889999999999875433 333444 59999999987643 3457889999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
++ ....+..+.......++++||||+.+....+.. ..+.....+.... .....+...+.... +...+.+
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p-~~r~~i~~~~~~~~---~~~~~~~ 462 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELP-PGRKPITTVVIPDS---RRDEVYE 462 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCC-CCCCCcEEEEeCcc---cHHHHHH
Confidence 85 333444455555678999999998665444332 2222211222111 11222333332222 2233333
Q ss_pred HHH-hhcCCCeEEEEeCCcc--------cHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccc
Q 013965 337 LLE-DIMDGSRILIFMDTKK--------GCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (433)
Q Consensus 337 ~l~-~~~~~~~~lVF~~s~~--------~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 405 (433)
.+. ....+.+++|||+..+ .++.+++.|... ++++..+||+|++.+|++++++|++|+.+|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 333 3345679999999654 455677777765 47899999999999999999999999999999999999
Q ss_pred cCCCc--cCeEEEEcCCCc
Q 013965 406 RGLGN--CACVIIVLCTFV 422 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~p~~ 422 (433)
+|+|+ +++||+++.|..
T Consensus 543 ~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 543 VGVDVPNATVMVIENAERF 561 (681)
T ss_pred eCcccCCCcEEEEeCCCCC
Confidence 99999 999999999973
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.2e-37 Score=310.72 Aligned_cols=288 Identities=20% Similarity=0.258 Sum_probs=212.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 109 YVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.+.+.+...+| +||++|.++++.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHH
Confidence 34455567788 7999999999999875 368999999999999999999988764 77899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccChHh---HHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+||.|+++.+.+++...++++..++|+...... ...+. ..++|+|+||+.+.+ ...+.++++||+||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 999999999999998889999999999876543 22333 357999999987643 345788999999999985
Q ss_pred hcCCcHHHHHHHHHhcCC---CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHH
Q 013965 259 LDMGFEPQIKKILSQIRP---DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (433)
.. ..+..+..... .+++++||||+.+....+.. ..+.....+.... .....+...+. ....+ ..+.
T Consensus 370 g~-----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~~--~~~~~-~~~~ 438 (630)
T TIGR00643 370 GV-----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVLI--KHDEK-DIVY 438 (630)
T ss_pred cH-----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEEe--CcchH-HHHH
Confidence 32 22222222222 68999999997664433322 2221111111111 11122222222 22222 3444
Q ss_pred HHHHh-hcCCCeEEEEeCCcc--------cHHHHHHHHHh--CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccc
Q 013965 336 KLLED-IMDGSRILIFMDTKK--------GCDQITRQLRM--DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (433)
Q Consensus 336 ~~l~~-~~~~~~~lVF~~s~~--------~~~~l~~~L~~--~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 404 (433)
+.+.. ...+.+++|||+..+ .++.+++.|.. .++.+..+||+|++++|..++++|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 44433 345678999999864 45667777765 36889999999999999999999999999999999999
Q ss_pred ccCCCc--cCeEEEEcCCC
Q 013965 405 ARGLGN--CACVIIVLCTF 421 (433)
Q Consensus 405 ~~Gldi--~~~Vi~~d~p~ 421 (433)
++|||+ +++||+++.|.
T Consensus 519 e~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAER 537 (630)
T ss_pred ecCcccCCCcEEEEeCCCc
Confidence 999999 99999999986
No 57
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=313.75 Aligned_cols=304 Identities=21% Similarity=0.248 Sum_probs=242.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHhHh-cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 104 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
+.+++.+.+.+...++.++.+.|+.++...+ +++|+|+++|||||||+.+++.++..+.+. +.++|||||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3477788888888888888888888886654 569999999999999999999999998864 56899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC
Q 013965 183 ELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (433)
Q Consensus 183 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~ 262 (433)
+||.+.++++.+ ....++++...+|+.+...+ ...+++|+|+||+++...+++....+.++++||+||+|.+.+..
T Consensus 87 ALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999993 45678999999999876542 23569999999999999999888888899999999999988887
Q ss_pred cHHHHHHHHHhcC---CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh-------HHHH
Q 013965 263 FEPQIKKILSQIR---PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES-------QKYN 332 (433)
Q Consensus 263 ~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~ 332 (433)
.++.++.++..++ ...|++++|||+|+ ..+++.+.-.++.........+.......+.+...... ....
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 8888888876654 34799999999975 67888887766553233333333333333333332211 2234
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-------------------------------------CCceEEEc
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIH 375 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh 375 (433)
.+...+..+..++++||||+|++.+...+..|+.. ...+..||
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 44445556667889999999999999999998730 03467899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEEcC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIVLC 419 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~ 419 (433)
++++.++|..+.+.|+.|+++||+||.++++|+|+ +++||+-|.
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~ 366 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDT 366 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeee
Confidence 99999999999999999999999999999999999 999998664
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7.7e-38 Score=291.94 Aligned_cols=318 Identities=21% Similarity=0.260 Sum_probs=255.4
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
...+++.+|+.+...|+..|++++.|+|.-++.. +++|.|.+|+++|+||||++..++-+..+... |.+.|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~Kmlf 266 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLF 266 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEE
Confidence 4467788999999999999999999999999987 77999999999999999999999988887763 778999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh----HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ----VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
++|..+||+|.++.|++-...+++++..-.|....... .......+||||+|++-+..+++.+ ..+.++..||+|
T Consensus 267 LvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 267 LVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred EehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 99999999999999998777888888776664332211 1222346899999999999999887 568999999999
Q ss_pred cchhhhcCCcHHHHHHHH---HhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC-hhH
Q 013965 254 EADRMLDMGFEPQIKKIL---SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQ 329 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~---~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (433)
|+|.+-+...++.+.-++ +.+.++.|+|.+|||..+ -+.+++.+....+... ..+..+..++.+.. +.+
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~e 418 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYD------ERPVPLERHLVFARNESE 418 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeec------CCCCChhHeeeeecCchH
Confidence 999988877666666554 455689999999999954 5677877766654432 33444555555554 778
Q ss_pred HHHHHHHHHHhh-------cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 330 KYNKLVKLLEDI-------MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 330 k~~~l~~~l~~~-------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
|.+.+.++.+.. ...+++|||++|++.|..++..|...|+++.++|++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 888877777542 1235899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCc-cCeEEEEcCCCcccccccCCCC
Q 013965 403 VAARGLGN-CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 403 ~~~~Gldi-~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++.|+|+ +..||. +-=-.-..||+|..|
T Consensus 499 AL~AGVDFPASQVIF-EsLaMG~~WLs~~EF 528 (830)
T COG1202 499 ALAAGVDFPASQVIF-ESLAMGIEWLSVREF 528 (830)
T ss_pred hhhcCCCCchHHHHH-HHHHcccccCCHHHH
Confidence 99999999 555543 322233445555444
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.6e-36 Score=300.70 Aligned_cols=276 Identities=17% Similarity=0.185 Sum_probs=200.7
Q ss_pred HHHHHHHHhHhcCCcEEEEccCCCchhHH---------HHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 124 PIQAQGWPMALKGRDLIGIAETGSGKTLA---------YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 124 ~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
.+|.++++.++++++++++|+||||||++ |++|.+..+..-. ......+++|++|||+||.|+..++.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999996 3344444432110 122356899999999999999999887
Q ss_pred hccC---CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHH
Q 013965 195 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (433)
Q Consensus 195 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 271 (433)
.... .+..+.+.+|+... .+........+|+|+|++. ....+.++++||+||||++...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 5433 35677888998763 2223333468999999752 11247889999999999876654 3344444
Q ss_pred HhcC-CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC----------hhHHHHHHHHHHHh
Q 013965 272 SQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS----------ESQKYNKLVKLLED 340 (433)
Q Consensus 272 ~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~ 340 (433)
.... ..+|+++||||++.+++.+ ..++.++..+.+... ....+++.+.... ..++ ..+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHH
Confidence 4432 3459999999999888777 578888877766432 1233333332111 1122 223344433
Q ss_pred hc--CCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHH-hcCCCCEEEEccccccCCCc--cCe
Q 013965 341 IM--DGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEF-KAGKSPIMTATDVAARGLGN--CAC 413 (433)
Q Consensus 341 ~~--~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f-~~g~~~iLvaT~~~~~Gldi--~~~ 413 (433)
.. .++++||||+++++|+.+++.|.+. ++.+..+||++++. ++++++| ++|+.+|||||+++++|||| +++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 21 3468999999999999999999876 68999999999975 5677777 78999999999999999999 999
Q ss_pred EEEEc
Q 013965 414 VIIVL 418 (433)
Q Consensus 414 Vi~~d 418 (433)
||+++
T Consensus 468 VID~G 472 (675)
T PHA02653 468 VYDTG 472 (675)
T ss_pred EEECC
Confidence 99998
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-35 Score=294.87 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=207.4
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
...|+++|.++++.++.+++.++++|||+|||+++...+ ....... ..++||++||++|+.||.+++.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~------~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY------EGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC------CCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 358999999999999999999999999999999754332 2222221 348999999999999999999998755
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
....+..+.+|.... .+.+|+|+||+++..... ..+.++++||+||||++... .+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 445566667765432 357999999999876542 23678999999999998654 4567777777788
Q ss_pred cEEEEEeccchHHHHH--HHHhcCCCeEEEeCCCCc------------------ccc-------cceeeee-eccChhHH
Q 013965 279 QTLYWSATWPKEVEHL--ARQYLYNPYKVIIGSPDL------------------KAN-------HAIRQHV-DIVSESQK 330 (433)
Q Consensus 279 ~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------~~~-------~~~~~~~-~~~~~~~k 330 (433)
++++||||++...... ...++++ +...+...+. ... ......+ .......+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 9999999986532211 1111111 1111100000 000 0000000 11223334
Q ss_pred HHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc-cccccCC
Q 013965 331 YNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGL 408 (433)
Q Consensus 331 ~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gl 408 (433)
...+.+++.... .+.+++|||.+.++++.+++.|.+.+.++..+||++++++|..+++.|++|+..||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 444555544432 45689999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred Cc--cCeEEEEcCCCcccccc
Q 013965 409 GN--CACVIIVLCTFVLYLTL 427 (433)
Q Consensus 409 di--~~~Vi~~d~p~~~~~~l 427 (433)
|+ +++||+.++|.+...|+
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~ 430 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVL 430 (501)
T ss_pred ccccccEEEEecCCcchhhhh
Confidence 99 99999999998865443
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-35 Score=304.54 Aligned_cols=272 Identities=20% Similarity=0.204 Sum_probs=208.3
Q ss_pred HHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEEE
Q 013965 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTC 205 (433)
Q Consensus 127 ~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~~ 205 (433)
.+.+..+.++++++++|+||||||++|.++++.... .+++++|++|||++|.|+++++.+ ++...+..+..
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 445566667899999999999999999999987752 156899999999999999999864 44445555554
Q ss_pred EECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHH-HHHHHhcCCCCcEEEE
Q 013965 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQI-KKILSQIRPDRQTLYW 283 (433)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~-~~i~~~~~~~~~~l~~ 283 (433)
...+.. .....++|+|+|||+|++++.++ ..+.++++|||||+| ++++.++...+ ..+...++++.|+++|
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 444332 22346899999999999998874 569999999999999 68887776544 4555667889999999
Q ss_pred EeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH-----HHHHHHHHhhcCCCeEEEEeCCcccHH
Q 013965 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY-----NKLVKLLEDIMDGSRILIFMDTKKGCD 358 (433)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~lVF~~s~~~~~ 358 (433)
|||++.+. ...++.++..+..... ...+++.+......++. ..+..++.. ..+++||||+++++++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEIR 223 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHH
Confidence 99998653 3556665444433221 12233333333333222 223333322 3568999999999999
Q ss_pred HHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCc
Q 013965 359 QITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFV 422 (433)
Q Consensus 359 ~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~ 422 (433)
.+++.|++ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||| +++||++++|..
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 99999987 47889999999999999999999999999999999999999999 999999999974
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.6e-36 Score=287.85 Aligned_cols=272 Identities=21% Similarity=0.214 Sum_probs=190.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccCh----
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG---- 213 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---- 213 (433)
+++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+.++... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 589999999999999999999876542 2568999999999999999999996432 233333322210
Q ss_pred --------HhHHHh------hcCCcEEEeChHHHHHHHHcCCc----ccc--cceeEeeccchhhhcCCcHHHHHHHHHh
Q 013965 214 --------PQVRDL------QKGVEIVIATPGRLIDMLESHNT----NLR--RVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (433)
Q Consensus 214 --------~~~~~~------~~~~~Iiv~Tp~~l~~~l~~~~~----~l~--~~~~lVvDEah~~~~~~~~~~~~~i~~~ 273 (433)
...... ....+|+|+||+++...+..... .+. ..++||+||+|++.+.++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 000000 12368999999999887665211 111 23799999999988765444 5555544
Q ss_pred cC-CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee--ccChhHHHHHHHHHHHhhcCCCeEEEE
Q 013965 274 IR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD--IVSESQKYNKLVKLLEDIMDGSRILIF 350 (433)
Q Consensus 274 ~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~l~~~l~~~~~~~~~lVF 350 (433)
+. .+.|+++||||+|+.+.+++......+......... ......+.+. ......+...+.++++....++++|||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 43 578999999999988777776654332111111100 0001111111 111223455566666655567899999
Q ss_pred eCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHH----HHHHHhcCCCCEEEEccccccCCCc-cCeEEEEcCCC
Q 013965 351 MDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDW----VLSEFKAGKSPIMTATDVAARGLGN-CACVIIVLCTF 421 (433)
Q Consensus 351 ~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~----~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~ 421 (433)
|+++++|+.++..|++.+. .+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|+ +++||+++.|.
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~~~~~ 306 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMITELAPI 306 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEEcCCCH
Confidence 9999999999999988765 4899999999999976 4899999999999999999999999 89999987773
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.1e-35 Score=301.32 Aligned_cols=272 Identities=19% Similarity=0.236 Sum_probs=206.6
Q ss_pred HHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEEE
Q 013965 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTC 205 (433)
Q Consensus 127 ~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~~ 205 (433)
.+.+..+.++++++++|+||||||++|.++++..... ..+++|++|||++|.|+++.+.+ ++...+..+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 3455566678999999999999999999998875321 34899999999999999999865 55556667766
Q ss_pred EECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh-hhcCCcHH-HHHHHHHhcCCCCcEEEE
Q 013965 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMGFEP-QIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~-~~~~~~~~-~~~~i~~~~~~~~~~l~~ 283 (433)
..++... .....+|+|+|||+|.+++..+ ..+.++++|||||+|. .++.++.. .+..++..++++.|+++|
T Consensus 83 ~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 6665432 1235689999999999998874 4689999999999995 56655432 344566678899999999
Q ss_pred EeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHH-----HHHHHHHhhcCCCeEEEEeCCcccHH
Q 013965 284 SATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN-----KLVKLLEDIMDGSRILIFMDTKKGCD 358 (433)
Q Consensus 284 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~lVF~~s~~~~~ 358 (433)
|||++.+. + ..++.++..+..... ...+.+.+......++.. .+..++.. ..+.+||||+++++++
T Consensus 156 SATl~~~~--l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 156 SATLDNDR--L-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred ecCCCHHH--H-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHHH
Confidence 99998642 3 456655444433221 122444443333333332 23333322 3578999999999999
Q ss_pred HHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCc
Q 013965 359 QITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFV 422 (433)
Q Consensus 359 ~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~ 422 (433)
.+++.|+. .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||| +++||++++|..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 99999987 57889999999999999999999999999999999999999999 999999888864
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.8e-34 Score=270.55 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=200.3
Q ss_pred HHHHHHHhHhcCCc--EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC----
Q 013965 125 IQAQGWPMALKGRD--LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS---- 198 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~--~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~---- 198 (433)
+|.++++.+.++.+ ++++||||||||.+|++|++.. +.++++++|+++|++|+.+.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998864 8889999999999999998842 345899999999999999999887632
Q ss_pred CCceEEEEECCccChHh--H------------------HHhhcCCcEEEeChHHHHHHHHcCC--------cccccceeE
Q 013965 199 SKIKSTCIYGGVPKGPQ--V------------------RDLQKGVEIVIATPGRLIDMLESHN--------TNLRRVTYL 250 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~--~------------------~~~~~~~~Iiv~Tp~~l~~~l~~~~--------~~l~~~~~l 250 (433)
.+..+..+.|.+..+.+ . ......+.|++|||+.|..++.... ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 34566666665322200 0 0112368899999999976654321 125789999
Q ss_pred eeccchhhhcCC-----cHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHh--cCCCeEEEeCCCCc-----------
Q 013965 251 VLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY--LYNPYKVIIGSPDL----------- 312 (433)
Q Consensus 251 VvDEah~~~~~~-----~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 312 (433)
|+||+|.+..+. +......++.......+++++|||+++.+....... +..+.....+..-.
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876433 122334444444445799999999999888877765 44554333333000
Q ss_pred c------cccceeeeeeccChhHHHH---HHHHHHHh-h--cCCCeEEEEeCCcccHHHHHHHHHhCC--CceEEEcCCC
Q 013965 313 K------ANHAIRQHVDIVSESQKYN---KLVKLLED-I--MDGSRILIFMDTKKGCDQITRQLRMDG--WPALSIHGDK 378 (433)
Q Consensus 313 ~------~~~~~~~~~~~~~~~~k~~---~l~~~l~~-~--~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~lh~~~ 378 (433)
. ....+.+.+.. ....+.. .+.+.+.+ . ..++++||||+|++.++.++..|+..+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 00123333322 2222222 23333322 1 245689999999999999999999764 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEEcCCCcccccccCCCCC
Q 013965 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
++.+|.++ ++.+|||||+++++|||+ .++|| ++ |.+...|+.+.-+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi-~~-p~~~~~yiqR~GR~ 356 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRDWLI-FS-ARDAAAFWQRLGRL 356 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCceEE-EC-CCCHHHHhhhcccC
Confidence 99998765 378899999999999999 55665 66 89999998876554
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-33 Score=259.48 Aligned_cols=306 Identities=22% Similarity=0.223 Sum_probs=225.0
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
..+++.||......++.+ |++++.|||.|||..+++-+...+...+ + ++|+++||+.|+.|.++.|.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 347799999999888866 9999999999999998888887777642 4 8999999999999999999998877
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
..-.++.++|......... .....+|+|+||+.+..-+..+..++.++.++|+|||||-....-...+.+.+.....++
T Consensus 85 p~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 85 PEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred ChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCc
Confidence 6778888888887665544 445689999999999999999999999999999999998654433334444444556778
Q ss_pred cEEEEEeccchHHHHHHH---HhcCCCeEE--------------------------------------------------
Q 013965 279 QTLYWSATWPKEVEHLAR---QYLYNPYKV-------------------------------------------------- 305 (433)
Q Consensus 279 ~~l~~SAT~~~~~~~~~~---~~~~~~~~~-------------------------------------------------- 305 (433)
.++++|||+..+.+.+.. .+.-..+.+
T Consensus 164 ~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 164 LILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred eEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999996433222211 110000000
Q ss_pred -EeCCCCccc-----------------ccceeeee---------------------------------------------
Q 013965 306 -IIGSPDLKA-----------------NHAIRQHV--------------------------------------------- 322 (433)
Q Consensus 306 -~~~~~~~~~-----------------~~~~~~~~--------------------------------------------- 322 (433)
......... .....+.+
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 000000000 00000000
Q ss_pred ------------------eccChhHHHHHHHHHHHhhc---CCCeEEEEeCCcccHHHHHHHHHhCCCceE-EE------
Q 013965 323 ------------------DIVSESQKYNKLVKLLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPAL-SI------ 374 (433)
Q Consensus 323 ------------------~~~~~~~k~~~l~~~l~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l------ 374 (433)
...-...|+..+.+++++.. .+.++|||++.+++|+.+.++|.+.+..+. .+
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r 403 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASR 403 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccc
Confidence 00011234555666665533 345999999999999999999999887774 22
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCCC
Q 013965 375 --HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 375 --h~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
..+|+|.++.++++.|++|++.|||||+++++|||| ++.||+|+.-.|..-++++.-+|
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRT 466 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRT 466 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcc
Confidence 257999999999999999999999999999999999 99999999999998888776554
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.3e-33 Score=276.93 Aligned_cols=296 Identities=20% Similarity=0.220 Sum_probs=227.2
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++..... ++.++|++||++||.|.++++..+.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 344 68999999999999998 999999999999999999987654 7789999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCC-------------------------cccccceeE
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN-------------------------TNLRRVTYL 250 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-------------------------~~l~~~~~l 250 (433)
...++++.+++|+.+. +.+....+++|+|+|...| .++|.... .....+.+.
T Consensus 169 ~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 9999999999999753 4455567899999999887 44444321 113567899
Q ss_pred eeccchhhh-cCC-----------------cHH--------------------------------HHHHHHHh-------
Q 013965 251 VLDEADRML-DMG-----------------FEP--------------------------------QIKKILSQ------- 273 (433)
Q Consensus 251 VvDEah~~~-~~~-----------------~~~--------------------------------~~~~i~~~------- 273 (433)
||||+|.++ |.. +.. .+++++..
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999743 100 000 00000000
Q ss_pred -----------c------C---------------------------------------------C---------------
Q 013965 274 -----------I------R---------------------------------------------P--------------- 276 (433)
Q Consensus 274 -----------~------~---------------------------------------------~--------------- 276 (433)
+ . +
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 0 0 0
Q ss_pred -CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCc
Q 013965 277 -DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTK 354 (433)
Q Consensus 277 -~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~ 354 (433)
-.++.+||||.+...+++...|..++..+...... .....+.+.+++..+|...|.+.+.... .+.++||||+|+
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 12567999999988888888888887665444332 2223344556678889999999987743 356899999999
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cC--------eEEEEcCCCccc
Q 013965 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CA--------CVIIVLCTFVLY 424 (433)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~--------~Vi~~d~p~~~~ 424 (433)
+.++.++..|.+.|+++..+||++. +|+..+..|+.+...|+|||++++||+|| .. +||++|+|.+..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999865 55555666666667799999999999999 22 899999999988
Q ss_pred ccccCC
Q 013965 425 LTLGPL 430 (433)
Q Consensus 425 ~~l~~~ 430 (433)
.|+.+.
T Consensus 562 ~y~hr~ 567 (656)
T PRK12898 562 IDRQLA 567 (656)
T ss_pred HHHHhc
Confidence 776554
No 67
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=282.41 Aligned_cols=298 Identities=22% Similarity=0.247 Sum_probs=228.4
Q ss_pred CCCCCCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCC--CCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 117 AGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQP--FLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
++|..+..+|++++|.+++ +.|++||||||+|||..|++.+|..+..+. ..-..++.+++||+|+++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5778899999999999986 679999999999999999999999887521 2233458899999999999999999999
Q ss_pred HhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC---cccccceeEeeccchhhhcCCcHHHHHHH
Q 013965 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN---TNLRRVTYLVLDEADRMLDMGFEPQIKKI 270 (433)
Q Consensus 194 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~~~~lVvDEah~~~~~~~~~~~~~i 270 (433)
+-....++++..++|++...... -..++|+|+||++|.-.-++.. ..++.+.+||+||+|.+-+ ..++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHH
Confidence 87778899999999998765432 3459999999999864433322 2357799999999997655 477877777
Q ss_pred HHhc-------CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh---HHH-----HHHH
Q 013965 271 LSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKY-----NKLV 335 (433)
Q Consensus 271 ~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~~l~ 335 (433)
+.++ ....+++++|||+|+ .++++..+..+|..-.+..+....+..+.+.+...... ... ....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 6544 357789999999975 78888887777544333333334555566555433222 111 1122
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC-----------------------CceEEEcCCCCHHHHHHHHHHHhc
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-----------------------WPALSIHGDKSQAERDWVLSEFKA 392 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----------------------~~~~~lh~~~~~~~r~~~~~~f~~ 392 (433)
+.++.+..+.+++|||.++..+...|+.|.+.. .....+|++|...+|..+.+.|..
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~ 420 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE 420 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc
Confidence 233444567899999999999999999886521 345689999999999999999999
Q ss_pred CCCCEEEEccccccCCCc-cCeEEEEcC
Q 013965 393 GKSPIMTATDVAARGLGN-CACVIIVLC 419 (433)
Q Consensus 393 g~~~iLvaT~~~~~Gldi-~~~Vi~~d~ 419 (433)
|.++||+||..+++|+|+ +.+||+-+-
T Consensus 421 G~i~vL~cTaTLAwGVNLPA~aViIKGT 448 (1230)
T KOG0952|consen 421 GHIKVLCCTATLAWGVNLPAYAVIIKGT 448 (1230)
T ss_pred CCceEEEecceeeeccCCcceEEEecCC
Confidence 999999999999999999 777776443
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=288.90 Aligned_cols=314 Identities=21% Similarity=0.256 Sum_probs=241.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
....+..++.+.|...|+++|.+|+..+.+|+|+||+.+||||||.+|++|+++++...+ ..++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhH
Confidence 344567888889999999999999999999999999999999999999999999999865 34789999999999
Q ss_pred HHHHHHHHHhccCCC--ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc----ccccceeEeeccchhhh
Q 013965 186 VQIQQESTKFGASSK--IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT----NLRRVTYLVLDEADRML 259 (433)
Q Consensus 186 ~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~----~l~~~~~lVvDEah~~~ 259 (433)
+.+.+++.++....+ +.+..+.|++........+.+.++|++|||.+|..++..... .++++++||+||+|-.-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999887776 778888888887766677788999999999999885544332 36779999999999532
Q ss_pred cCCcHHHHHHHHH----hc---CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC------
Q 013965 260 DMGFEPQIKKILS----QI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ 326 (433)
Q Consensus 260 ~~~~~~~~~~i~~----~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 326 (433)
-.|+..+..+++ .+ +...|+|+.|||+.. ..+++..+........+... .........+....
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~~~--g~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVDED--GSPRGLRYFVRREPPIRELA 284 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcceeeccCC--CCCCCceEEEEeCCcchhhh
Confidence 225544444433 32 457899999999954 45666777666655532222 22222222222222
Q ss_pred ---hhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH----HHHHhCC----CceEEEcCCCCHHHHHHHHHHHhcCC
Q 013965 327 ---ESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT----RQLRMDG----WPALSIHGDKSQAERDWVLSEFKAGK 394 (433)
Q Consensus 327 ---~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~lh~~~~~~~r~~~~~~f~~g~ 394 (433)
..++...+..++... ..+-++|+|+.+++.++.++ ..+...+ ..+..+++++..++|.++...|++|+
T Consensus 285 ~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 123344444444332 34569999999999999997 4444445 56889999999999999999999999
Q ss_pred CCEEEEccccccCCCc--cCeEEEEcCCC-cccccccC
Q 013965 395 SPIMTATDVAARGLGN--CACVIIVLCTF-VLYLTLGP 429 (433)
Q Consensus 395 ~~iLvaT~~~~~Gldi--~~~Vi~~d~p~-~~~~~l~~ 429 (433)
..++++|++++-|+|| ++.||+...|. ++..+...
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~ 402 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQR 402 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHh
Confidence 9999999999999999 99999999999 76666543
No 69
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=260.34 Aligned_cols=255 Identities=29% Similarity=0.440 Sum_probs=200.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHh---ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccce
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKF---GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVT 248 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (433)
.|.++|+-|.|||++|.+..+++| ..+..++...+.||.-...|...+..+.+|+|+||+|+.+.+..+...+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 478999999999999999855554 45556788889999999999999999999999999999999999999999999
Q ss_pred eEeeccchhhhcCCcHHHHHHHHHhcC------CCCcEEEEEeccch-HHHHHHHHhcCCCeEEEeCCCCcccccceeee
Q 013965 249 YLVLDEADRMLDMGFEPQIKKILSQIR------PDRQTLYWSATWPK-EVEHLARQYLYNPYKVIIGSPDLKANHAIRQH 321 (433)
Q Consensus 249 ~lVvDEah~~~~~~~~~~~~~i~~~~~------~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (433)
++|+|||+.++..++...+..+..+++ ...|.++.|||+.. ++..+....+..|.-+.....+ ..++..+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHV 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccc
Confidence 999999999999888888888877765 24689999999743 3455566666666666554444 222222222
Q ss_pred eeccC------------------------------hhHHHHHHHHHH---------HhhcCCCeEEEEeCCcccHHHHHH
Q 013965 322 VDIVS------------------------------ESQKYNKLVKLL---------EDIMDGSRILIFMDTKKGCDQITR 362 (433)
Q Consensus 322 ~~~~~------------------------------~~~k~~~l~~~l---------~~~~~~~~~lVF~~s~~~~~~l~~ 362 (433)
+..+. ..+......+++ +. ....+.||||.|+.+|+.|.+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-HAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-hccCceEEEEeccccchHHHH
Confidence 21110 000111111222 22 234589999999999999999
Q ss_pred HHHhCC---CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCccccccc
Q 013965 363 QLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 363 ~L~~~~---~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
++.+.| +.|.++||+..+.+|.+.++.|+.+..++|||||+++||+|| +.++||+-+|..-.-|+-
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvh 594 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVH 594 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhh
Confidence 998764 789999999999999999999999999999999999999999 999999999987776653
No 70
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.5e-33 Score=245.07 Aligned_cols=202 Identities=52% Similarity=0.868 Sum_probs=184.7
Q ss_pred CcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 101 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 101 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999887642 123789999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
+++|+.|+.+.+.++....++.+..++|+.........+..+++|+|+||++|.+++.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999887777666667899999999999999988888889999999999999998
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEE
Q 013965 261 MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (433)
Q Consensus 261 ~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 305 (433)
.++...+..++..++.++|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999999999999999999999999999999988764
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.2e-32 Score=286.81 Aligned_cols=304 Identities=23% Similarity=0.254 Sum_probs=223.7
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
..+|+++|.+++..++.+ ++++++|||+|||++++++++..+.. .+.++|||+||++|+.|+.+.++++...
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 347899999999988877 99999999999999999888877632 2568999999999999999999997655
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
...++..+.|+..... ...+..+++|+|+||+.+...+......+.++++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4557777887766543 344556789999999999887777777788999999999999865443334444444455677
Q ss_pred cEEEEEeccchHH---HHHHHHhcCCCeEEE--------------------eCCCC------------------------
Q 013965 279 QTLYWSATWPKEV---EHLARQYLYNPYKVI--------------------IGSPD------------------------ 311 (433)
Q Consensus 279 ~~l~~SAT~~~~~---~~~~~~~~~~~~~~~--------------------~~~~~------------------------ 311 (433)
++++||||+.... ......+......+. +....
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999973222 222222111000000 00000
Q ss_pred cc--cc------------cceeee--------------------------------------------------------
Q 013965 312 LK--AN------------HAIRQH-------------------------------------------------------- 321 (433)
Q Consensus 312 ~~--~~------------~~~~~~-------------------------------------------------------- 321 (433)
.. .. ..+...
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 00 000000
Q ss_pred ----------------eeccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC-----
Q 013965 322 ----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD----- 377 (433)
Q Consensus 322 ----------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~----- 377 (433)
........|...|.++++.. ..+.++||||+++++|+.+++.|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 00011234555666666553 356799999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 378 ---KSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 378 ---~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
|++.+|.+++++|++|+.+|||||+++++|+|+ +++||+||+|.+...|+.+..
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~G 462 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKG 462 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999999988876543
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-33 Score=288.08 Aligned_cols=297 Identities=20% Similarity=0.225 Sum_probs=238.5
Q ss_pred HHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 115 ~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..+|...++|.|.++|...+.|+|+++.+|||.||++||++|++.. +...|||.|..+|...+...+..
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 3579999999999999999999999999999999999999998765 55899999999999888777644
Q ss_pred hccCCCceEEEEECCccChHh---HHHhhc---CCcEEEeChHHHHH--HHHcCCccccc---ceeEeeccchhhhcCC-
Q 013965 195 FGASSKIKSTCIYGGVPKGPQ---VRDLQK---GVEIVIATPGRLID--MLESHNTNLRR---VTYLVLDEADRMLDMG- 262 (433)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~---~~~Iiv~Tp~~l~~--~l~~~~~~l~~---~~~lVvDEah~~~~~~- 262 (433)
. ++....+.++....++ .+.+.. ..+|++.||+++.. .+......+.. +.++|+||||+.+.|+
T Consensus 327 ~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 327 K----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred c----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3 4777777777655433 233333 47999999999853 12211222333 8999999999999998
Q ss_pred -cHHHHHHHH--HhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHH
Q 013965 263 -FEPQIKKIL--SQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLE 339 (433)
Q Consensus 263 -~~~~~~~i~--~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 339 (433)
|++.++++- ..-.+...++.+|||....+...+-..+.-.....+... ....++...+......+....+...++
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~~~~~~~~~~~ 480 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKDALLDILEESK 480 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCccchHHHHHHhh
Confidence 999998873 333456899999999999888877776654433333332 223445555554444555666667777
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEE
Q 013965 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIV 417 (433)
Q Consensus 340 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~ 417 (433)
.......+||||.++.+|+.++..|+..++.+..||++|+..+|..|.++|..++.+|+|||=++++|||. |+.||||
T Consensus 481 ~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 481 LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEEC
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCCCccccccc
Q 013965 418 LCTFVLYLTLG 428 (433)
Q Consensus 418 d~p~~~~~~l~ 428 (433)
.+|.++..|..
T Consensus 561 ~lPks~E~YYQ 571 (941)
T KOG0351|consen 561 SLPKSFEGYYQ 571 (941)
T ss_pred CCchhHHHHHH
Confidence 99999998863
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-33 Score=253.63 Aligned_cols=300 Identities=22% Similarity=0.287 Sum_probs=220.2
Q ss_pred HHHHHHH-CCCCCC-cHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHH
Q 013965 110 VMQEISK-AGFFEP-TPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (433)
Q Consensus 110 l~~~l~~-~g~~~~-~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~ 186 (433)
+.++|++ +|+.++ ++.|.+|+..+.. .+||.|++|||+||++||++|+|.+ +...||+.|..+|..
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 3444544 455443 7999999999876 5799999999999999999999876 458999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCccChHhH---HHh---hcCCcEEEeChHHHH-----HHHHcCCcccccceeEeeccc
Q 013965 187 QIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDL---QKGVEIVIATPGRLI-----DMLESHNTNLRRVTYLVLDEA 255 (433)
Q Consensus 187 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~---~~~~~Iiv~Tp~~l~-----~~l~~~~~~l~~~~~lVvDEa 255 (433)
.+.+.+.++. +++..+..-.+..+.. .++ .....+++.||+... .+|+. ..+-..+.++|+|||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechh
Confidence 9999888864 4444444333332222 222 236789999999753 23322 222345899999999
Q ss_pred hhhhcCC--cHHHHHHH--HHhcCCCCcEEEEEeccchHHHHHHHH--hcCCCeEEEeCCCCcccccceeeeeeccC-hh
Q 013965 256 DRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQ--YLYNPYKVIIGSPDLKANHAIRQHVDIVS-ES 328 (433)
Q Consensus 256 h~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 328 (433)
|+.+.|| |++++.++ ++..-++...+.++||.++.+++.+-. .+.+|+.+.-.. ....++-..+.+.+ -.
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP---~FR~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP---TFRDNLFYDNHMKSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc---chhhhhhHHHHHHHHhh
Confidence 9999998 99988876 445557889999999999998775544 355665443211 11111111111111 12
Q ss_pred HHHHHHHHHHHhhc------------CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCC
Q 013965 329 QKYNKLVKLLEDIM------------DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396 (433)
Q Consensus 329 ~k~~~l~~~l~~~~------------~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~ 396 (433)
+-...|.++..... ..+-.||||.|+++|++++-.|...|+++..+|+++...+|.++.++|.+++..
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 22333444332211 113589999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCc--cCeEEEEcCCCccccccc
Q 013965 397 IMTATDVAARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 397 iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
|++||..+++|+|- +++|||.+.|.++..|..
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQ 341 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQ 341 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHH
Confidence 99999999999999 999999999999988853
No 74
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=245.72 Aligned_cols=312 Identities=19% Similarity=0.247 Sum_probs=246.3
Q ss_pred cCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 102 RDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 102 ~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
++++.+.+..+-|++ +...+++|.|..+|+..+.+.+++++.|||.||++||.+|+|.. ...+||++|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 456788888887775 56778999999999999999999999999999999999999875 567999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH---h---hcCCcEEEeChHHHHH---HHHc--CCccccccee
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---L---QKGVEIVIATPGRLID---MLES--HNTNLRRVTY 249 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~---~~~~~Iiv~Tp~~l~~---~l~~--~~~~l~~~~~ 249 (433)
..+|++.+.-.++.++ +....+....++....+. + .....+++.||+++.. ++.+ .......+.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999999999898876 544555544444332111 1 2346799999998852 2221 1334567899
Q ss_pred EeeccchhhhcCC--cHHHHHH--HHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeecc
Q 013965 250 LVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV 325 (433)
Q Consensus 250 lVvDEah~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (433)
+.+||+|+-..|| |++.+.. ++..-.++..+++++||....+...++..+.-...+.+.......+...+......
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCC
Confidence 9999999999887 8887765 46666688999999999998888888776654333333332212222222222233
Q ss_pred ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccc
Q 013965 326 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (433)
Q Consensus 326 ~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 405 (433)
++.+-.+.+.++++....+...||||-++++|++++..|+..|+.+..+|..|.+++|.-+-+.|.+|+++|+|||-.++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 55677888888887766777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc--cCeEEEEcCCCccccccc
Q 013965 406 RGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
+|||- +++|||..+|.++.-|..
T Consensus 379 mgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHH
Confidence 99999 999999999999988865
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-31 Score=270.52 Aligned_cols=298 Identities=17% Similarity=0.187 Sum_probs=220.1
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+++|..+++.+++|+ ++.+.||+|||++|++|++..... |+.++|++||++||.|.++.+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 465 78999999999888886 999999999999999999876664 7789999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCC------cccccceeEeeccchhhhcCC-------
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRMLDMG------- 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lVvDEah~~~~~~------- 262 (433)
...++++.++.|+.+...+.+. ..+++|+++||++| .+++.... ..++.+.++||||||+|+-..
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 9999999999999884333333 35699999999999 55555432 246789999999999854100
Q ss_pred ---------cHHHHHHHHHhcCC---------------------------------------------------------
Q 013965 263 ---------FEPQIKKILSQIRP--------------------------------------------------------- 276 (433)
Q Consensus 263 ---------~~~~~~~i~~~~~~--------------------------------------------------------- 276 (433)
+...+..++..+..
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 00011111111100
Q ss_pred ------------------------------------------------------------CCcEEEEEeccchHHHHHHH
Q 013965 277 ------------------------------------------------------------DRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 277 ------------------------------------------------------------~~~~l~~SAT~~~~~~~~~~ 296 (433)
-.++.+||.|...+.+++..
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 01455666666544444544
Q ss_pred HhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 297 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
.|.-+-..+ .... ...........+....+|...+.+.+... ..+.++||||+|++.++.++..|.+.|+++..+|
T Consensus 383 ~Y~l~v~~I--Pt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~ 459 (790)
T PRK09200 383 VYNMEVVQI--PTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLN 459 (790)
T ss_pred HhCCcEEEC--CCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEec
Confidence 443322211 1111 11111112234457788999999988664 4567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-----cC-----eEEEEcCCCcccccccCCC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-----CA-----CVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-----~~-----~Vi~~d~p~~~~~~l~~~~ 431 (433)
|++.+.++..+..++..| .|+|||++++||+|| +. +||++|+|.+...|+.+.-
T Consensus 460 ~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~G 523 (790)
T PRK09200 460 AKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRG 523 (790)
T ss_pred CCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhc
Confidence 999998888888887766 699999999999999 44 9999999999988876543
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-31 Score=264.31 Aligned_cols=296 Identities=20% Similarity=0.201 Sum_probs=220.5
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+++|..+...++.|+ ++.++||+|||++|.+|++..... |..++|++||++||.|.++.+..+.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 354 67889998888888776 999999999999999999654443 4569999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC------CcccccceeEeeccchhhhcCCcH-H---
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRMLDMGFE-P--- 265 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lVvDEah~~~~~~~~-~--- 265 (433)
..+++++.+++|+.+...+... -.++|+|+||++| .+++... ...++.+.++|+||+|+++-...+ +
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 9999999999999876544333 3589999999999 8888765 245788999999999986521000 0
Q ss_pred --------------------------------------------HHHHHH------------------Hhc------C--
Q 013965 266 --------------------------------------------QIKKIL------------------SQI------R-- 275 (433)
Q Consensus 266 --------------------------------------------~~~~i~------------------~~~------~-- 275 (433)
.+++++ ..+ .
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 011100 000 0
Q ss_pred -------------------------------------------C----------------CCcEEEEEeccchHHHHHHH
Q 013965 276 -------------------------------------------P----------------DRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 276 -------------------------------------------~----------------~~~~l~~SAT~~~~~~~~~~ 296 (433)
+ -.++.+||.|...+..++..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 0 12455777777655555555
Q ss_pred HhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 297 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
.|.-+-..+.... ...........+....+|...+.+.+.. +..+.|+||||+|++.++.++..|.+.|+++..+|
T Consensus 360 iY~l~vv~IPtnk---p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Ln 436 (745)
T TIGR00963 360 IYNLEVVVVPTNR---PVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLN 436 (745)
T ss_pred HhCCCEEEeCCCC---CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEee
Confidence 5543322221111 1111112223355677788888776644 44577999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccC---------eEEEEcCCCcccccccCC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCA---------CVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~---------~Vi~~d~p~~~~~~l~~~ 430 (433)
+. +.+|+..+.+|..+...|+|||++++||+||.. +||++++|.+...+....
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~ 498 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLR 498 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHh
Confidence 99 889999999999999999999999999999955 999999999988776543
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=261.92 Aligned_cols=303 Identities=24% Similarity=0.225 Sum_probs=215.6
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
...+|.||.+.+..++ |+|++|++|||+|||.++...++.++...+ ..++|+++|++-|+.|+...+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3478999999999999 999999999999999999999999988765 578999999999999999888888766
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcc-cccceeEeeccchhhhcCC-cHHHHHHHHHhcCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTN-LRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP 276 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~-l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~ 276 (433)
..+....||.........+-...+|+|+||+.+...+.+.... |+.+.++||||||+-.... +...++..+..-..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 5566666664444344466677999999999999888775443 5889999999999865443 44455555555445
Q ss_pred CCcEEEEEeccchHHHHHHHH--------------------------------------------------hcC-----C
Q 013965 277 DRQTLYWSATWPKEVEHLARQ--------------------------------------------------YLY-----N 301 (433)
Q Consensus 277 ~~~~l~~SAT~~~~~~~~~~~--------------------------------------------------~~~-----~ 301 (433)
..|+|++|||+..+.++.... ++. +
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 559999999975433222110 000 0
Q ss_pred CeEEEeCC--CCc-------ccccc--eeee--e------------------e---------------------------
Q 013965 302 PYKVIIGS--PDL-------KANHA--IRQH--V------------------D--------------------------- 323 (433)
Q Consensus 302 ~~~~~~~~--~~~-------~~~~~--~~~~--~------------------~--------------------------- 323 (433)
........ .+. ....+ -.+. + .
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 00000000 000 00000 0000 0 0
Q ss_pred -------------------ccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEc---
Q 013965 324 -------------------IVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIH--- 375 (433)
Q Consensus 324 -------------------~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~lh--- 375 (433)
......|++.+.+++.+. .+..++||||.+++.|+.|..+|.+ .+++...+-
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 001234555555555443 2445999999999999999999873 234444433
Q ss_pred -----CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 376 -----GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 376 -----~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
.+|++.++.++++.|++|++.|||||+++++|||| ++.||.||+-.+....+.+.
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrr 512 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRR 512 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHh
Confidence 37999999999999999999999999999999999 99999999999987776653
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.4e-31 Score=262.60 Aligned_cols=289 Identities=16% Similarity=0.121 Sum_probs=204.3
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
++|+|.|++..+..++..++.++||+|||++|++|++..... +..++|++|+++||.|+++.+..+...+++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 456666666655555557999999999999999998776654 556999999999999999999999999999
Q ss_pred eEEEEECCcc---ChHhHHHhhcCCcEEEeChHHH-HHHHHc------CCcccccceeEeeccchhhhcCC---------
Q 013965 202 KSTCIYGGVP---KGPQVRDLQKGVEIVIATPGRL-IDMLES------HNTNLRRVTYLVLDEADRMLDMG--------- 262 (433)
Q Consensus 202 ~~~~~~g~~~---~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~------~~~~l~~~~~lVvDEah~~~~~~--------- 262 (433)
++.+++++.. .....+....+++|+++||++| .+++.. ....++.+.++|+||||.|+-..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9998887632 2223334446899999999999 555533 22346789999999999865211
Q ss_pred -------cHHHHHHHHHhcCC-----------------------------------------------------------
Q 013965 263 -------FEPQIKKILSQIRP----------------------------------------------------------- 276 (433)
Q Consensus 263 -------~~~~~~~i~~~~~~----------------------------------------------------------- 276 (433)
+......++..+.+
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 01111111111111
Q ss_pred ----------------------------------------------------------CCcEEEEEeccchHHHHHHHHh
Q 013965 277 ----------------------------------------------------------DRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 277 ----------------------------------------------------------~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
-.++.+||.|...+..++...|
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 0234556666544444444333
Q ss_pred cCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC
Q 013965 299 LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 377 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~ 377 (433)
.-+ +..+ .... +..........+....+|...+.+.+.+. ..+.++||||+|++.++.++..|.+.|+++..+||+
T Consensus 381 ~l~-v~~I-Pt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~ 457 (762)
T TIGR03714 381 SLS-VVKI-PTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ 457 (762)
T ss_pred CCC-EEEc-CCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 222 1111 1110 11111122234567788999999888764 456799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEccccccCCCcc-----------CeEEEEcCCCcc
Q 013965 378 KSQAERDWVLSEFKAGKSPIMTATDVAARGLGNC-----------ACVIIVLCTFVL 423 (433)
Q Consensus 378 ~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~-----------~~Vi~~d~p~~~ 423 (433)
+.+.++..+.++++.| .|+|||++++||+||. .+|+++++|...
T Consensus 458 ~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r 512 (762)
T TIGR03714 458 NAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR 512 (762)
T ss_pred ChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcH
Confidence 9999988887777776 6999999999999995 788999999854
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=3.3e-30 Score=269.65 Aligned_cols=267 Identities=22% Similarity=0.280 Sum_probs=187.5
Q ss_pred HHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC----HHHHHHHHHHHHH-hccCC
Q 013965 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT----RELAVQIQQESTK-FGASS 199 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt----r~L~~q~~~~~~~-~~~~~ 199 (433)
+..+.+..+..++.++++|+||||||+ ++|.+...... +....+++..|+ ++||.++++++.. ++...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 334555666678889999999999999 68855443211 112357777885 4777777777764 44433
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHH-HHHHHHhcCCC
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPD 277 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~-~~~i~~~~~~~ 277 (433)
++.+ .... ....+++|+|+|||+|++.+..+.. +.++++||||||| ++++.+|... +..++ ..+++
T Consensus 151 GY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL-~~rpd 218 (1294)
T PRK11131 151 GYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELL-PRRPD 218 (1294)
T ss_pred ceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhh-hcCCC
Confidence 3322 1111 1235689999999999999987554 8999999999999 7889888764 33333 33478
Q ss_pred CcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccCh------hHHHHHHHHHHHhh--cCCCeEEE
Q 013965 278 RQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE------SQKYNKLVKLLEDI--MDGSRILI 349 (433)
Q Consensus 278 ~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~--~~~~~~lV 349 (433)
.|+|+||||++. +.+.+.+...|. +.+.... ..+...+..... .+....++..+..+ ...+.+||
T Consensus 219 lKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999974 466666665564 3332221 122222222211 23344444443322 23468999
Q ss_pred EeCCcccHHHHHHHHHhCCCc---eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcC
Q 013965 350 FMDTKKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLC 419 (433)
Q Consensus 350 F~~s~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~ 419 (433)
||+++.+++.+++.|.+.+++ +..+||++++++|..+++. .|..+|||||+++++|||| +++||++++
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl 364 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGT 364 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCC
Confidence 999999999999999987765 6789999999999999986 5788999999999999999 999999864
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=9e-30 Score=254.40 Aligned_cols=285 Identities=18% Similarity=0.171 Sum_probs=194.1
Q ss_pred CCCcHHHHHHHHhHhc-C--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..++|+|.+++..+.. + +..++++|||+|||++.+..+ ..+ +.++|||||+.+|+.||.+++.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4689999999998774 4 478999999999999865443 333 2359999999999999999999986
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC--------CcccccceeEeeccchhhhcCCcHHHHH
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------NTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~l~~~~~lVvDEah~~~~~~~~~~~~ 268 (433)
......+..++|+... .......|+|+|+..+.....+. .+.-..+++||+||||++.. ..++
T Consensus 323 ~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 5444556666654321 11234789999998775321110 11224689999999999754 4566
Q ss_pred HHHHhcCCCCcEEEEEeccchHHHH--HHHHhcCCCeEEEeCCCCc-----ccccce---------------------ee
Q 013965 269 KILSQIRPDRQTLYWSATWPKEVEH--LARQYLYNPYKVIIGSPDL-----KANHAI---------------------RQ 320 (433)
Q Consensus 269 ~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~---------------------~~ 320 (433)
+++..+ .....+++|||+..+... ....+++ |......-.++ .+.... ..
T Consensus 394 ~il~~l-~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIV-QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhc-CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 666666 345689999998543221 1222222 22211111000 000000 00
Q ss_pred eeeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC-CCCEE
Q 013965 321 HVDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG-KSPIM 398 (433)
Q Consensus 321 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~iL 398 (433)
.........|...+..+++.+. .+.++||||.+...++.++..|. +..+||++++.+|.+++++|++| ..++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 0011123345556555665442 56799999999999999988873 56799999999999999999975 78999
Q ss_pred EEccccccCCCc--cCeEEEEcCCC-cccccccCCC
Q 013965 399 TATDVAARGLGN--CACVIIVLCTF-VLYLTLGPLS 431 (433)
Q Consensus 399 vaT~~~~~Gldi--~~~Vi~~d~p~-~~~~~l~~~~ 431 (433)
|+|+++.+|||+ +++||+++.|. |...|+.++-
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlG 582 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLG 582 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 999999999999 99999999984 8887776653
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.4e-28 Score=236.25 Aligned_cols=289 Identities=21% Similarity=0.266 Sum_probs=219.2
Q ss_pred CCHHHHHHH-HHCCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 106 FPDYVMQEI-SKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 106 l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
....+++.+ ....| +||..|++++..+... .+-++++..|||||++++++++..+.. |.++.++
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALM 317 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALM 317 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEe
Confidence 344444444 44555 7899999999998863 468999999999999999999988876 8899999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH---HHhhcC-CcEEEeChHHHHHHHHcCCcccccceeEeecc
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDE 254 (433)
+||..||.|.++.+.++....++++..++|........ ..+.++ .+|+|+| +.+..+...++++.++|+||
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEec
Confidence 99999999999999999999999999999987654443 333444 8999999 56666778899999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCC-CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHH
Q 013965 255 ADRMLDMGFEPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (433)
-|| |+-.-+..+..... .+.+++||||+-+. .++-..+.+-..-.+.... .-...+...+. .. ++...
T Consensus 393 QHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP-~GRkpI~T~~i--~~-~~~~~ 461 (677)
T COG1200 393 QHR-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELP-PGRKPITTVVI--PH-ERRPE 461 (677)
T ss_pred ccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCC-CCCCceEEEEe--cc-ccHHH
Confidence 999 78778888877777 78999999998654 3444444443332333222 11133333332 22 33333
Q ss_pred HHH-HHHhhcCCCeEEEEeCCcccHH--------HHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 334 LVK-LLEDIMDGSRILIFMDTKKGCD--------QITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 334 l~~-~l~~~~~~~~~lVF~~s~~~~~--------~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+++ +.++...+.++.|.|+-.++.+ .+++.|+.. ++++..+||.|+..++++++++|++|+.+|||||.
T Consensus 462 v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT 541 (677)
T COG1200 462 VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT 541 (677)
T ss_pred HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 333 3445567889999999887654 455566532 56799999999999999999999999999999999
Q ss_pred ccccCCCc--cCeEEEEcC
Q 013965 403 VAARGLGN--CACVIIVLC 419 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~~d~ 419 (433)
+.+.|||+ +.++|+.+.
T Consensus 542 VIEVGVdVPnATvMVIe~A 560 (677)
T COG1200 542 VIEVGVDVPNATVMVIENA 560 (677)
T ss_pred EEEecccCCCCeEEEEech
Confidence 99999999 666666654
No 82
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=249.45 Aligned_cols=313 Identities=18% Similarity=0.232 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCC---CCCEEEEEec
Q 013965 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG---DGPIVLVLAP 180 (433)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~~lil~P 180 (433)
.+|.+-..++ .|...+.++|....+.++.+ .++++|||||+|||.++++-+|+.+..+.....+ ...+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4666666655 35667999999999999876 6899999999999999999999999876542222 2458999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC--cccccceeEeeccchhh
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRM 258 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~lVvDEah~~ 258 (433)
.++|+..|...+.+....+++++.-.+|+.....+. ..+..|+||||+++.-.-++.. ...+-++++|+||+|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999998899999999999987654332 2468999999999855544422 23456899999999965
Q ss_pred hcCCcHHHHHHHHHhc-------CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh---
Q 013965 259 LDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES--- 328 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 328 (433)
-| +.++.++.|+.+. ...+.++++|||+|+ .++.+.-+..++..+...... ..+..+.|.+.-+.+.
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~s-yRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSS-YRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcc-cCcCCccceEeccccCCch
Confidence 44 4777777775443 347899999999986 444444444444333222222 4455566655544332
Q ss_pred HHHHH----HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh-------------------------------------C
Q 013965 329 QKYNK----LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-------------------------------------D 367 (433)
Q Consensus 329 ~k~~~----l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~-------------------------------------~ 367 (433)
.+.+. ..+.+-+....+++|||+.+++++.+.|..++. .
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 22222 222222333457999999999999999988873 1
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccCeEEEEcCCCcccc
Q 013965 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCACVIIVLCTFVLYL 425 (433)
Q Consensus 368 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~~Vi~~d~p~~~~~ 425 (433)
.+..+.+|++|+..+|+.+.+.|..|.++|||+|..+++|+|++.+.|++..|...+.
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~p 664 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDP 664 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCc
Confidence 2678899999999999999999999999999999999999999544455455544443
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.4e-27 Score=243.36 Aligned_cols=282 Identities=18% Similarity=0.188 Sum_probs=196.5
Q ss_pred CCcHHHHHHHHhHhcC---CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 121 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g---~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.+++.|+++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 5899999999999874 789999999999999998887766653 6789999999999999999998854
Q ss_pred CCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC---cHHHHHH-
Q 013965 198 SSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---FEPQIKK- 269 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~---~~~~~~~- 269 (433)
+.++..++++.+..++...+ ....+|+|+|++.+. ..+.++++||+||+|...... .....+.
T Consensus 215 --g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 215 --GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred --CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 46788889887765543332 245899999998763 347889999999999765332 1111222
Q ss_pred -HHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh------HHHHHHHHHHHh-h
Q 013965 270 -ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES------QKYNKLVKLLED-I 341 (433)
Q Consensus 270 -i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l~~~l~~-~ 341 (433)
++.....+.+++++|||++.+....+.. +....+.............-..+...... .....+++.+++ .
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 2334457899999999987665544432 11111212111100000011111111100 012345555544 3
Q ss_pred cCCCeEEEEeCCcc------------------------------------------------------------cHHHHH
Q 013965 342 MDGSRILIFMDTKK------------------------------------------------------------GCDQIT 361 (433)
Q Consensus 342 ~~~~~~lVF~~s~~------------------------------------------------------------~~~~l~ 361 (433)
..++++|||++++. .+++++
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 34568999988632 456777
Q ss_pred HHHHhC--CCceEEEcCCCCH--HHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCc
Q 013965 362 RQLRMD--GWPALSIHGDKSQ--AERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFV 422 (433)
Q Consensus 362 ~~L~~~--~~~~~~lh~~~~~--~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~ 422 (433)
+.|.+. +.++..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+ +++|+++|....
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchh
Confidence 778765 7889999999864 679999999999999999999999999999 999987776543
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.2e-28 Score=249.96 Aligned_cols=296 Identities=19% Similarity=0.220 Sum_probs=190.2
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
...|+|+|..+.........+++.||||+|||.++++++...+... ....++|..||+++++|+++++.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 3479999998865544566799999999999999777655433221 2467999999999999999998764322
Q ss_pred C--CceEEEEECCccChHhH--------------------HHhh----c---CCcEEEeChHHHHHHHHc-CCcccccc-
Q 013965 199 S--KIKSTCIYGGVPKGPQV--------------------RDLQ----K---GVEIVIATPGRLIDMLES-HNTNLRRV- 247 (433)
Q Consensus 199 ~--~~~~~~~~g~~~~~~~~--------------------~~~~----~---~~~Iiv~Tp~~l~~~l~~-~~~~l~~~- 247 (433)
. ...+..++|........ ..+. + -.+|+|||+.+++..... ....++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 1 24566666654321110 0111 1 269999999998754332 22223333
Q ss_pred ---eeEeeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHH-HHhcCC-C------eEEE--eCCC---
Q 013965 248 ---TYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLA-RQYLYN-P------YKVI--IGSP--- 310 (433)
Q Consensus 248 ---~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~-~~~~~~-~------~~~~--~~~~--- 310 (433)
++|||||+|.+ +......+..+++.+ .....+|+||||+|....+.. +.+-.. + +... ....
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 58999999975 332344555555544 346789999999998876543 333211 0 0000 0000
Q ss_pred C--ccc-----ccceeeeeecc--Ch-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC---CceEEEcCC
Q 013965 311 D--LKA-----NHAIRQHVDIV--SE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG---WPALSIHGD 377 (433)
Q Consensus 311 ~--~~~-----~~~~~~~~~~~--~~-~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~lh~~ 377 (433)
. ... .......+... .. ......+..+++....++++||||||++.|+.+++.|++.+ ..+..+||.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0 000 00001111111 11 11122233334444567899999999999999999998764 679999999
Q ss_pred CCHHHH----HHHHHHH-hcCC---CCEEEEccccccCCCc-cCeEEEEcCCC
Q 013965 378 KSQAER----DWVLSEF-KAGK---SPIMTATDVAARGLGN-CACVIIVLCTF 421 (433)
Q Consensus 378 ~~~~~r----~~~~~~f-~~g~---~~iLvaT~~~~~Gldi-~~~Vi~~d~p~ 421 (433)
+...+| .++++.| ++|+ ..|||||+++++|||| ++++|...+|.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~DvlItdlaPi 649 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFDWLITQLCPV 649 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCCeEEECCCCH
Confidence 999999 4577888 6666 4699999999999999 99999988884
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=9.4e-28 Score=252.26 Aligned_cols=270 Identities=21% Similarity=0.228 Sum_probs=190.0
Q ss_pred HHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEE
Q 013965 128 QGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIY 207 (433)
Q Consensus 128 ~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~ 207 (433)
+.+..+..++.++++|+||||||+ ++|.+..-.. .+...+++++.|+|.-|..+++.+.+... ..+...+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~RvA~elg---~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRIAEELG---TPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHHHHHhC---CCcceEE
Confidence 445556667889999999999999 6676544322 11234788899999988888877766332 2222233
Q ss_pred CC-ccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHH-HHHHHHhcCCCCcEEEEE
Q 013965 208 GG-VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQ-IKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 208 g~-~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~-~~~i~~~~~~~~~~l~~S 284 (433)
|. ...+.+ ....+.|.|+|+|.|++.+..+. .+.++++||||||| ++++.+|... ++++ ...+++.|+|+||
T Consensus 144 GY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~i-l~~rpdLKlIlmS 218 (1283)
T TIGR01967 144 GYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQL-LPRRPDLKIIITS 218 (1283)
T ss_pred eeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHH-HhhCCCCeEEEEe
Confidence 32 111111 23468999999999999988754 48999999999999 7999988876 4444 3445789999999
Q ss_pred eccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC------hhHHHHHHHHHHHhhc--CCCeEEEEeCCccc
Q 013965 285 ATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS------ESQKYNKLVKLLEDIM--DGSRILIFMDTKKG 356 (433)
Q Consensus 285 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~~--~~~~~lVF~~s~~~ 356 (433)
||++. +.+++.+...|... +..... .+...+.... ..++...+...+.... ..+.+|||++++.+
T Consensus 219 ATld~--~~fa~~F~~apvI~-V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPIIE-VSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred CCcCH--HHHHHHhcCCCEEE-ECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 99964 56676665556433 222111 1222221111 1234444554444322 34689999999999
Q ss_pred HHHHHHHHHhCC---CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCC
Q 013965 357 CDQITRQLRMDG---WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTF 421 (433)
Q Consensus 357 ~~~l~~~L~~~~---~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~ 421 (433)
++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+|||||+++++|||| +++||+++++.
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 999999998764 4588999999999999997654 346899999999999999 99999999775
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.3e-28 Score=235.94 Aligned_cols=286 Identities=22% Similarity=0.250 Sum_probs=192.8
Q ss_pred CCCcHHHHHHHHhHhc----CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 120 FEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+|+++|.+++..+.+ .+..++++|||+|||.+++..+ ..+ ...+|||+||++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999988 8899999999999999755443 333 223999999999999999887776
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 275 (433)
.... ..+. .+++..... .. ..|+|+|.+.+.............+++||+||||++....+ +.+...+.
T Consensus 104 ~~~~-~~~g-~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~~~ 171 (442)
T COG1061 104 LLLN-DEIG-IYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILELLS 171 (442)
T ss_pred cCCc-cccc-eecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHHHhhh
Confidence 5332 1222 333322211 11 46999999988764211122234699999999999876533 33333333
Q ss_pred CCCcEEEEEeccchHHH---HHHHHhcCCCeEEEeCCCCc-----ccccceee-ee------------------------
Q 013965 276 PDRQTLYWSATWPKEVE---HLARQYLYNPYKVIIGSPDL-----KANHAIRQ-HV------------------------ 322 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~------------------------ 322 (433)
....+++||||++.... .....+++ +........+. .++..... ..
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 32339999999764321 11111111 11111110000 00000000 00
Q ss_pred -----------eccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh
Q 013965 323 -----------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK 391 (433)
Q Consensus 323 -----------~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~ 391 (433)
.......+...+..++.....+.+++|||.+..+++.++..+...+. +..+.+..+..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 00111223333334443332456899999999999999999998887 889999999999999999999
Q ss_pred cCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 392 AGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 392 ~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
.|.+++||++.++.+|+|+ ++++|....+.|...|++++
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~l 370 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRL 370 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHh
Confidence 9999999999999999999 99999999999998887765
No 87
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=3.9e-28 Score=207.72 Aligned_cols=165 Identities=33% Similarity=0.546 Sum_probs=143.1
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCce
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 202 (433)
||+|.++++.+.+++++++.||||+|||++|++|++..+.... ..++++++|+++|+.|+.+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK------DARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS------SSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC------CceEEEEeecccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998887631 4589999999999999999999998888889
Q ss_pred EEEEECCccCh-HhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC--CCCc
Q 013965 203 STCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR--PDRQ 279 (433)
Q Consensus 203 ~~~~~g~~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~--~~~~ 279 (433)
+..++++.... .....+..+++|+|+||++|.+++.....++.++++||+||+|.+..+.+...+..++..+. .+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999888755 34444556799999999999999998666777899999999999999888888999888873 3689
Q ss_pred EEEEEeccchHHHH
Q 013965 280 TLYWSATWPKEVEH 293 (433)
Q Consensus 280 ~l~~SAT~~~~~~~ 293 (433)
++++|||+++.++.
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999966654
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.1e-27 Score=239.22 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=197.4
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|.++|.-+--.+..| -++.++||+|||++|.+|++..+.. +..++||+||++||.|.++++..+...++
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 4556665555444444 5889999999999999999987754 45699999999999999999999999999
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCC-ccc-----ccceeEeeccchhhhcCC-----------
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN-TNL-----RRVTYLVLDEADRMLDMG----------- 262 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~-~~l-----~~~~~lVvDEah~~~~~~----------- 262 (433)
+++.+++|+.+...+.... .++|+|+||++| .+++.... ..+ +.+.++||||||+|+-..
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998766554433 689999999999 89888762 333 579999999999855100
Q ss_pred -----cHHHHHHHHHhcCC-------------------------------------------------------------
Q 013965 263 -----FEPQIKKILSQIRP------------------------------------------------------------- 276 (433)
Q Consensus 263 -----~~~~~~~i~~~~~~------------------------------------------------------------- 276 (433)
....+..++..+..
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 00001111110000
Q ss_pred ---------------------------------------------------------------------CCcEEEEEecc
Q 013965 277 ---------------------------------------------------------------------DRQTLYWSATW 287 (433)
Q Consensus 277 ---------------------------------------------------------------------~~~~l~~SAT~ 287 (433)
-.++-+||.|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 01334555555
Q ss_pred chHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHh
Q 013965 288 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRM 366 (433)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~ 366 (433)
..+..++..-|--+-+.+. ...+....-.....+....+|...+.+.+... ..+.|+||||+|++.++.++..|.+
T Consensus 390 ~te~~Ef~~iY~l~Vv~IP---tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVIP---TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCCCEEECC---CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 4444444444332221111 11111111122344567788888888877554 4567999999999999999999999
Q ss_pred CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 367 DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 367 ~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
.|+++..+|+.+.+.+++.+.++|+.|. |+|||++++||+||
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI 508 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDI 508 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcce
Confidence 9999999999999999999999999995 99999999999999
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.6e-26 Score=230.94 Aligned_cols=181 Identities=18% Similarity=0.260 Sum_probs=142.5
Q ss_pred ChhhccCCHHHHHHHHHhcCcee-ccCCCCCCCCCCcCCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHhHhcCC
Q 013965 67 SPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEIS-----KAGFFEP---TPIQAQGWPMALKGR 137 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~~l~g~ 137 (433)
.+....++++++..-........ .+..+-. + --+.+.+.+++.+.+. ..||..| +|+|.++++.+..++
T Consensus 31 e~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~-~-l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~ 108 (970)
T PRK12899 31 DEKFSSLSDDELRNKTAELKQRYQDGESLDK-L-LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHK 108 (970)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCchHH-H-HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCC
Confidence 35677778777754332211111 1111110 0 0245678888888877 5799988 999999999999999
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 217 (433)
++++.++||+|||++|++|++..+.. +..++||+||++||.|.++.+..+....++++.+++||.+...+..
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~ 180 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKE 180 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 99999999999999999999987764 2248999999999999999999999999999999999998887765
Q ss_pred HhhcCCcEEEeChHHH-HHHHHcCCcccc-------cceeEeeccchhhh
Q 013965 218 DLQKGVEIVIATPGRL-IDMLESHNTNLR-------RVTYLVLDEADRML 259 (433)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l-~~~l~~~~~~l~-------~~~~lVvDEah~~~ 259 (433)
.+ +++|+|+||++| .++++.....++ .+.++||||||.|+
T Consensus 181 ~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 181 IY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred Hc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 54 599999999999 999988755554 45899999999876
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=6.1e-27 Score=230.22 Aligned_cols=277 Identities=17% Similarity=0.170 Sum_probs=211.6
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
+|.++|++||-++.+|..|+|.|+|.+|||+++..++...-.+ +.+++|.+|.++|.+|.++.|+.-....+
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h--------~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH--------MTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh--------ccceEecchhhhhccchHHHHHHhccccc
Confidence 7899999999999999999999999999999988776554443 77899999999999999999988554433
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
.++|+... ...+.++|+|.+.|..++-++..-++++.+||+||+|.+.|...+..|+.++-.++++.++
T Consensus 369 ----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 67777643 4568999999999999999988888999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHHhcCC--CeEEEeCCCCcccccceeeeeecc---------------------------------
Q 013965 281 LYWSATWPKEVEHLARQYLYN--PYKVIIGSPDLKANHAIRQHVDIV--------------------------------- 325 (433)
Q Consensus 281 l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 325 (433)
|++|||.|+.. +++.+...- .....+... ..+..+++++...
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999998754 455544321 111111110 1111111111100
Q ss_pred ------------------------------ChhHHH--HHHHHHHHhhcCC--CeEEEEeCCcccHHHHHHHHHhCC---
Q 013965 326 ------------------------------SESQKY--NKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQLRMDG--- 368 (433)
Q Consensus 326 ------------------------------~~~~k~--~~l~~~l~~~~~~--~~~lVF~~s~~~~~~l~~~L~~~~--- 368 (433)
....+. ...+.++..+... -|+||||-+++.|++.++.|...+
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 000011 1244444443322 389999999999999999986521
Q ss_pred ------------------------------------CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-c
Q 013965 369 ------------------------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-C 411 (433)
Q Consensus 369 ------------------------------------~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~ 411 (433)
-.++++||++-+--++-+.-.|..|-++||+||.++++|+|. +
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 246789999999999999999999999999999999999999 8
Q ss_pred CeEEEEcC
Q 013965 412 ACVIIVLC 419 (433)
Q Consensus 412 ~~Vi~~d~ 419 (433)
++||+-.+
T Consensus 675 RtvVF~Sl 682 (1248)
T KOG0947|consen 675 RTVVFSSL 682 (1248)
T ss_pred eeEEeeeh
Confidence 88777554
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.5e-26 Score=232.86 Aligned_cols=278 Identities=19% Similarity=0.216 Sum_probs=205.0
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+++|.-+.-.+..| -++.++||+|||+++.+|++..... |..+-|++||..||.|.++.+..+.
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 344 5678887777666666 4899999999999999999644443 3457799999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCCc------ccccceeEeeccchhhhcCC-------
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHNT------NLRRVTYLVLDEADRMLDMG------- 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~------~l~~~~~lVvDEah~~~~~~------- 262 (433)
..+++++.++.|+.+...+...+ .++|+++||++| .+++..... .++.+.++||||||.|+-..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999998876665554 489999999999 888876542 36779999999999854100
Q ss_pred ---------cHHHHHHHHHhcC----------------------------------------------------------
Q 013965 263 ---------FEPQIKKILSQIR---------------------------------------------------------- 275 (433)
Q Consensus 263 ---------~~~~~~~i~~~~~---------------------------------------------------------- 275 (433)
....+..++..+.
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0011111111110
Q ss_pred -------------------------------------------C----------------CCcEEEEEeccchHHHHHHH
Q 013965 276 -------------------------------------------P----------------DRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 276 -------------------------------------------~----------------~~~~l~~SAT~~~~~~~~~~ 296 (433)
+ -.++.+||.|...+..++..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 0 12455777777655555555
Q ss_pred HhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 297 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
.|.-+-..+.... ...........+....+|...+.+.+... ..+.|+||||+|++.++.++..|.+.++++..+|
T Consensus 385 iY~l~vv~IPtnk---p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLn 461 (830)
T PRK12904 385 IYNLDVVVIPTNR---PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLN 461 (830)
T ss_pred HhCCCEEEcCCCC---CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEecc
Confidence 5543322221111 11111112334557788999999888663 4567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CA 412 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~ 412 (433)
+. +.+|+..+.+|+.+...|+|||++++||+|| ..
T Consensus 462 ak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~Lg 497 (830)
T PRK12904 462 AK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLG 497 (830)
T ss_pred Cc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCC
Confidence 96 8899999999999999999999999999999 43
No 92
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=4.1e-26 Score=235.92 Aligned_cols=299 Identities=15% Similarity=0.104 Sum_probs=189.5
Q ss_pred CCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
.|.|+|.+++..++.. ..+++..++|.|||..+.+.+-..+... ...++|||||. .|..||..++.+...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF~- 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRFN- 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHhC-
Confidence 5899999999877653 4799999999999998655444333321 24579999997 899999999976432
Q ss_pred CCceEEEEECCccChHhH--HHhhcCCcEEEeChHHHHHHHH-cCCcccccceeEeeccchhhhcCC--cHHHHHHHHHh
Q 013965 199 SKIKSTCIYGGVPKGPQV--RDLQKGVEIVIATPGRLIDMLE-SHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQ 273 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i~~~ 273 (433)
+....+.++....... .......+++|+|.+.+...-. .....-..+++|||||||++-... -...+..+...
T Consensus 224 --l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 224 --LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred --CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 3333333221110000 0111246899999887753110 001112468999999999985211 11122222222
Q ss_pred cCCCCcEEEEEeccch-HH------------------HHHH-------------H-----------------HhcCCCe-
Q 013965 274 IRPDRQTLYWSATWPK-EV------------------EHLA-------------R-----------------QYLYNPY- 303 (433)
Q Consensus 274 ~~~~~~~l~~SAT~~~-~~------------------~~~~-------------~-----------------~~~~~~~- 303 (433)
......++++|||+-. .. ..+. . .++.+..
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 2234578999999631 00 0000 0 0110000
Q ss_pred --------------------------------EEEeCCCC--c-ccccceeeeee-------------------------
Q 013965 304 --------------------------------KVIIGSPD--L-KANHAIRQHVD------------------------- 323 (433)
Q Consensus 304 --------------------------------~~~~~~~~--~-~~~~~~~~~~~------------------------- 323 (433)
.+.+.... . ..+....+.+.
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 00000000 0 00000000000
Q ss_pred ------------ccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHH-hCCCceEEEcCCCCHHHHHHHHHHH
Q 013965 324 ------------IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAERDWVLSEF 390 (433)
Q Consensus 324 ------------~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~lh~~~~~~~r~~~~~~f 390 (433)
......|...|.++++.. ...|+||||+++..+..+++.|+ ..|+.+..+||+|++.+|+++++.|
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 011124566777777664 36789999999999999999994 6799999999999999999999999
Q ss_pred hcC--CCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 391 KAG--KSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 391 ~~g--~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
+++ ..+|||||+++++|+|+ +++||+||+|++...|..+.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRI 584 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRI 584 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHh
Confidence 984 58999999999999999 99999999999999887654
No 93
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.2e-25 Score=229.30 Aligned_cols=292 Identities=20% Similarity=0.215 Sum_probs=230.3
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhc----C--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 105 GFPDYVMQEISK-AGFFEPTPIQAQGWPMALK----G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 105 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~----g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+.+....+.+.. ++| +-||-|..||..+.+ + .|-++||..|-|||.+++=+++..+.. |++|.|
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAv 648 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAV 648 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEE
Confidence 455566666665 455 459999999999885 3 489999999999999999898888775 889999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
++||--||+|.++.|++-..+.++++..+.-=.+..++...+. ...||||+| +.+-+..+.++++.++|||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEe
Confidence 9999999999999999988899999998877666666544443 368999999 4444557789999999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHH
Q 013965 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNK 333 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (433)
|-|| |+-.-+.-++.++.+.-++-||||+-+....++-.-+++-..+.... .....++.++.-.++.--.+
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP---~~R~pV~T~V~~~d~~~ire- 794 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP---EDRLPVKTFVSEYDDLLIRE- 794 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC---CCCcceEEEEecCChHHHHH-
Confidence 9999 66667777788889999999999987777777766555533322111 22233333333333322222
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
.+++++..++++-..+|..++.+.+++.|+.. ..++.+.||.|+..+-++++.+|-+|+.+|||||.+.+.||||
T Consensus 795 --AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 795 --AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred --HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 34556667899999999999999999999875 5678999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCC
Q 013965 411 -CACVIIVLCTF 421 (433)
Q Consensus 411 -~~~Vi~~d~p~ 421 (433)
++++|+-+...
T Consensus 873 nANTiIIe~AD~ 884 (1139)
T COG1197 873 NANTIIIERADK 884 (1139)
T ss_pred CCceEEEecccc
Confidence 88888876543
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.1e-25 Score=218.50 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=174.3
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh
Q 013965 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (433)
Q Consensus 140 lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 219 (433)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +.++..++++.+..+....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 468999999999987665444432 6689999999999999999998754 35677888877655443332
Q ss_pred ----hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC---cHHHHH--HHHHhcCCCCcEEEEEeccchH
Q 013965 220 ----QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---FEPQIK--KILSQIRPDRQTLYWSATWPKE 290 (433)
Q Consensus 220 ----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~---~~~~~~--~i~~~~~~~~~~l~~SAT~~~~ 290 (433)
....+|+|+|+..+. ..+.++++|||||+|....+. .....+ .++.....+.+++++|||++.+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 235799999997663 247789999999999765433 111111 2223334688999999997655
Q ss_pred HHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh---HHHHHHHHHHHh-hcCCCeEEEEeCCccc----------
Q 013965 291 VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES---QKYNKLVKLLED-IMDGSRILIFMDTKKG---------- 356 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~~lVF~~s~~~---------- 356 (433)
....+.. +....+..............+.+....+. .-...+++.+++ ...++++|||+|++..
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 4444322 11111111110000001111111111111 112345555544 3456789999887653
Q ss_pred --------------------------------------------------HHHHHHHHHhC--CCceEEEcCCCCHHHH-
Q 013965 357 --------------------------------------------------CDQITRQLRMD--GWPALSIHGDKSQAER- 383 (433)
Q Consensus 357 --------------------------------------------------~~~l~~~L~~~--~~~~~~lh~~~~~~~r- 383 (433)
++++++.|.+. +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 57788888775 7789999999987655
Q ss_pred -HHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCC
Q 013965 384 -DWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTF 421 (433)
Q Consensus 384 -~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~ 421 (433)
+.++++|++|+.+|||+|+++++|+|+ +++|+++|...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc
Confidence 899999999999999999999999999 88887776654
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.8e-25 Score=227.81 Aligned_cols=283 Identities=19% Similarity=0.239 Sum_probs=214.7
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
..+| +|.++|++++-.+.++.+|+++||||+|||++...++...+.. +.+++|++|.++|.+|.+.++...
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHH
Confidence 3455 6899999999999999999999999999999988888777665 667999999999999999988764
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 275 (433)
.....-.+..++|+... ..++.++|+|.+.|..++..+...+..+.+||+||+|.|.|...+..++.++..++
T Consensus 186 fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 186 FGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 43222334566776543 45689999999999999999888899999999999999999999999999999999
Q ss_pred CCCcEEEEEeccchHHHHHHHHhc---CCCeEEEeCCCCcccccceeeeeec-------cChhH----------------
Q 013965 276 PDRQTLYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVDI-------VSESQ---------------- 329 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------------- 329 (433)
.+.++++||||+|+. +++..++- ..|..++... ..+..+.+++.. +++..
T Consensus 259 ~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~---~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 259 DHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTE---HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred CCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeec---CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 999999999999764 55555543 3344443332 222222222211 11100
Q ss_pred -------------------------------HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-----------
Q 013965 330 -------------------------------KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD----------- 367 (433)
Q Consensus 330 -------------------------------k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------- 367 (433)
+...++..+... ..-++|+|+-+++.|+..+..+...
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 001122222211 2348999999999999998776520
Q ss_pred -----------------CC-------------ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE
Q 013965 368 -----------------GW-------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII 416 (433)
Q Consensus 368 -----------------~~-------------~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~ 416 (433)
++ .+.++|++|-+..+..+.+.|..|-.+|++||.+++.|+|. ++.|+.
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~ 493 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF 493 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee
Confidence 12 13479999999999999999999999999999999999999 888887
Q ss_pred EcC
Q 013965 417 VLC 419 (433)
Q Consensus 417 ~d~ 419 (433)
..+
T Consensus 494 ~~l 496 (1041)
T COG4581 494 TSL 496 (1041)
T ss_pred eee
Confidence 543
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=4.5e-26 Score=219.09 Aligned_cols=273 Identities=18% Similarity=0.211 Sum_probs=212.5
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
++.|+|.+||.++-++++++|+|.|.+|||.++..++...+.. +-+++|..|-++|.+|-++++..-....
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 6789999999999999999999999999999999998888876 5689999999999999999988755433
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
...+|+... ...+..+|+|.+.|..++-++.--++.+.+||+||+|.|-|...+-.|+.-+-.++++.+.
T Consensus 200 ---GLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 200 ---GLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred ---ceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 345555432 3568899999999999999988888999999999999999998888888888889999999
Q ss_pred EEEEeccchHHHHHHHHhc---CCCeEEEeCCCCcccccceeeeeec---------cCh-----hH--------------
Q 013965 281 LYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHVDI---------VSE-----SQ-------------- 329 (433)
Q Consensus 281 l~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~-------------- 329 (433)
+++|||+|+. .+++.+.. ..|-++...... +..+++++.. +++ ++
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 9999999864 55666543 345555443322 2222222210 000 00
Q ss_pred ------------------------HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC-----------------
Q 013965 330 ------------------------KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG----------------- 368 (433)
Q Consensus 330 ------------------------k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~----------------- 368 (433)
....+.+++-.. ...++|||+-++++|+.+|-.+.+..
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 122333333222 33589999999999999997776521
Q ss_pred ----------------------CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEE
Q 013965 369 ----------------------WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIV 417 (433)
Q Consensus 369 ----------------------~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~ 417 (433)
-.+.++||++-+--++-+.-.|.+|-+++|+||.+++.|+|. ++.|+.-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 246789999999999999999999999999999999999999 7777653
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.8e-24 Score=228.62 Aligned_cols=298 Identities=15% Similarity=0.185 Sum_probs=187.7
Q ss_pred CCCcHHHHHHHHhHhc-----CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 120 FEPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..++++|.+|+..+.. .+.++++++||||||.+++ .++..+.... ...++|+|+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 3589999999987652 3679999999999998743 3444444321 246899999999999999999998
Q ss_pred hccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-----CcccccceeEeeccchhhhc--C------
Q 013965 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLD--M------ 261 (433)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~lVvDEah~~~~--~------ 261 (433)
+..........+++...... ........|+|+|+++|...+... ...+..+++||+||||+... .
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 75332212111221110010 111345799999999998765321 13467899999999998531 0
Q ss_pred -------CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHH--------------HHhcCC---CeEEEeCCCC--cccc
Q 013965 262 -------GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLA--------------RQYLYN---PYKVIIGSPD--LKAN 315 (433)
Q Consensus 262 -------~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~--------------~~~~~~---~~~~~~~~~~--~~~~ 315 (433)
.+...+++++..+ +...|+||||+......+. ..++.+ |+.+...... ....
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 1245778888765 4578999999854332211 112221 2222210000 0000
Q ss_pred cc--e------eeee--eccCh---------------hHHHHHHHH-HHHhh--cCCCeEEEEeCCcccHHHHHHHHHhC
Q 013965 316 HA--I------RQHV--DIVSE---------------SQKYNKLVK-LLEDI--MDGSRILIFMDTKKGCDQITRQLRMD 367 (433)
Q Consensus 316 ~~--~------~~~~--~~~~~---------------~~k~~~l~~-~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~ 367 (433)
.. + ...+ ....+ .+....+.+ +++.. ...+++||||.++++|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0 0000 00000 011111222 11111 12368999999999999999887652
Q ss_pred ------C---CceEEEcCCCCHHHHHHHHHHHhcCCC-CEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 368 ------G---WPALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 368 ------~---~~~~~lh~~~~~~~r~~~~~~f~~g~~-~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+ ..+..+||+++ ++..++++|+++.. +|+|+++++.+|+|+ +.+||+++.+.|...|+..
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Qm 793 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQM 793 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHH
Confidence 2 24567899875 56789999999887 599999999999999 9999999999999988653
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.4e-23 Score=181.96 Aligned_cols=262 Identities=20% Similarity=0.232 Sum_probs=186.8
Q ss_pred CCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+++|.|..+-..+. +.++.++.|-||+|||.. +.+.++....+ |..+.+.+|+...+.+.+.+++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 68999988877655 468999999999999985 66667776664 8889999999999999999998854
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
. +..+.+++|+.+... ...++|+|..+|+++-+. ++++|+||+|.+.-..-......+-+..+.
T Consensus 169 ~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred c--cCCeeeEecCCchhc-------cccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 4 367788898765421 278999999999888654 899999999976433222222223334456
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH------HHHHHHHHhh-cCCCeEEE
Q 013965 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY------NKLVKLLEDI-MDGSRILI 349 (433)
Q Consensus 277 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~-~~~~~~lV 349 (433)
..-+|.+|||.+++.+.-+..--..+ +.+.......+..+-..+...+...++ ..|...|+.. ..+.+++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 77899999999887765554322111 211111111111222222333333332 2466666554 34669999
Q ss_pred EeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 350 FMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 350 F~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
|+++++..+++++.|++. ...+..+|+. ...|.+..++|++|+..+||+|.+++||+.+
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTf 371 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTF 371 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhccccc
Confidence 999999999999999543 3455788987 4578999999999999999999999999999
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.3e-23 Score=210.09 Aligned_cols=273 Identities=19% Similarity=0.232 Sum_probs=190.7
Q ss_pred HHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceE
Q 013965 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~ 203 (433)
...+.+..+.+++.++++||||||||+ ++|.+..- ..+ +.+.++.++.|+|.-|..+++++.+ ++...+-.|
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle--~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLE--EGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHh--hhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 444555666778999999999999999 55543321 111 2356899999999888888887765 444334333
Q ss_pred EEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHHHH-HHHhcCCCCcEE
Q 013965 204 TCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKK-ILSQIRPDRQTL 281 (433)
Q Consensus 204 ~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~-i~~~~~~~~~~l 281 (433)
....-..+ .......|-++|.|.|+.++..+.. |+.+++||+||+| |.++.++.-.+.+ ++...+++.++|
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI 199 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI 199 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE
Confidence 32211111 1234578999999999999998665 8999999999999 6777776655444 466677789999
Q ss_pred EEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeee-eccChhH-HHHHHHHHHHhhc--CCCeEEEEeCCcccH
Q 013965 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSESQ-KYNKLVKLLEDIM--DGSRILIFMDTKKGC 357 (433)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-k~~~l~~~l~~~~--~~~~~lVF~~s~~~~ 357 (433)
.||||+. .+.+...+..-|+..+-+... .++..+ ....... -...+...+.... ..+.+|||.+...++
T Consensus 200 imSATld--~~rfs~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 200 IMSATLD--AERFSAYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEecccC--HHHHHHHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999985 455655555455544433321 222222 1111222 3344444443332 356899999999999
Q ss_pred HHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccCeEEEEc
Q 013965 358 DQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCACVIIVL 418 (433)
Q Consensus 358 ~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~~Vi~~d 418 (433)
+.+++.|.+ ....+.++||.++.+++.++++--..|+.+|++||++++++|+|...++++|
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 999999997 3477899999999999999998888888889999999999999944444444
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=8.2e-24 Score=212.78 Aligned_cols=273 Identities=18% Similarity=0.199 Sum_probs=195.1
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|+++|.-+--.+. +.-++.++||.|||++|.+|++..... +..|.||+|+..||.|..+++..+...++
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 45666665544444 446889999999999999999887765 55599999999999999999999999999
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC-Cccc-----ccceeEeeccchhhhcCC-----------
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH-NTNL-----RRVTYLVLDEADRMLDMG----------- 262 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~-~~~l-----~~~~~lVvDEah~~~~~~----------- 262 (433)
+++.++.++.+... +.-.-.++|+++||+.| .+++..+ .... +.+.++||||||.++-..
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999998876532 22223699999999999 8888775 2222 678999999999755211
Q ss_pred -----cHHH-------------------------------------------HHHHH---H------hc-----------
Q 013965 263 -----FEPQ-------------------------------------------IKKIL---S------QI----------- 274 (433)
Q Consensus 263 -----~~~~-------------------------------------------~~~i~---~------~~----------- 274 (433)
.... +++.+ . .+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 0000 00111 0 00
Q ss_pred -----------C---------------------------------------------C----------------CCcEEE
Q 013965 275 -----------R---------------------------------------------P----------------DRQTLY 282 (433)
Q Consensus 275 -----------~---------------------------------------------~----------------~~~~l~ 282 (433)
. + -.++.+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 0 0 013445
Q ss_pred EEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHH
Q 013965 283 WSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQIT 361 (433)
Q Consensus 283 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~ 361 (433)
||.|...+..++..-|--+-+.+.... .....-.....+....+|..++++-+... ..+.|+||||.|++.++.++
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPTnk---p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPTNR---PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCCCC---CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 555554444444444433322221111 11111122234556788888888877654 45679999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 362 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
..|...++++..+|+.+.+.+++.+.++|+.|. |+|||++++||+||
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDI 513 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDI 513 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcce
Confidence 999999999999999999999999999999999 99999999999999
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=8.2e-24 Score=209.60 Aligned_cols=309 Identities=21% Similarity=0.239 Sum_probs=217.5
Q ss_pred HHHHHCCCCCCcHHHHHHH--HhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 112 QEISKAGFFEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i--~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
-..+..|...+..+|.+++ +.++.++|.+..+||+.|||+++.+-++..+... ...++.+.|..+.+..-.
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceeehhHHHH
Confidence 3344578888999999998 6688899999999999999999999998887764 456899999999998888
Q ss_pred HHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc--CCcccccceeEeeccchhhhcCCcHHHH
Q 013965 190 QESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES--HNTNLRRVTYLVLDEADRMLDMGFEPQI 267 (433)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~l~~~~~lVvDEah~~~~~~~~~~~ 267 (433)
..+..+....|+.+...+|..+.... +...++.|||.++-..+++. ..-.+..+.+|||||.|.+.+.+.+..+
T Consensus 287 ~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 287 SALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 88888988999999888877665432 34578999999987655443 1123567899999999999999988887
Q ss_pred HHHHHhc-----CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH-----------
Q 013965 268 KKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY----------- 331 (433)
Q Consensus 268 ~~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----------- 331 (433)
+.++.++ ....|+|+||||+|+ +..+..++-...+...+....+.....+-..+.......-.
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N-~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPN-NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCC-hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhc
Confidence 7776543 345689999999975 33333322211111111111100000000000000000001
Q ss_pred -----HHHHHHHH-hhcCCCeEEEEeCCcccHHHHHHHHHhC--------------------------------------
Q 013965 332 -----NKLVKLLE-DIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------- 367 (433)
Q Consensus 332 -----~~l~~~l~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------- 367 (433)
+.+..++. ....+.++||||++++.|+.++..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 11222221 2334457999999999999998666431
Q ss_pred CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccCeEEEEcCCCcccccccCCCC
Q 013965 368 GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 368 ~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
.+.++++|++++.++|+.+...|+.|...|++||+.++.|+|++..-|++..|.-...++..+.|
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Y 586 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEY 586 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhH
Confidence 25678999999999999999999999999999999999999995555667778777766666544
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=4e-23 Score=214.57 Aligned_cols=297 Identities=20% Similarity=0.239 Sum_probs=197.6
Q ss_pred CCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.++++|.+++.++. .|.+.|++.++|.|||+. .+.++.++.... +....+|||||. ++..+|.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ-aIalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ-TISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH-HHHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 57999999999876 478899999999999997 444455544321 113358999996 77889999999998
Q ss_pred cCCCceEEEEECCccChHhHHH---hhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRD---LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 273 (433)
+. +++..++|.......... .....+|+|+|++.+...... +.--.+++|||||||++-.. ...+.+.+..
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 54 566666665432222111 123579999999988654322 11234789999999997653 3344455555
Q ss_pred cCCCCcEEEEEeccch-HHHHH---HH---------------H----------------------h------------cC
Q 013965 274 IRPDRQTLYWSATWPK-EVEHL---AR---------------Q----------------------Y------------LY 300 (433)
Q Consensus 274 ~~~~~~~l~~SAT~~~-~~~~~---~~---------------~----------------------~------------~~ 300 (433)
+. ....+++|+|+-. ...++ +. . + +.
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 54 4456889999521 11110 00 0 0 00
Q ss_pred CCeEEE--eCCCCc--ccccce---------------------ee----------------------eeeccChhHHHHH
Q 013965 301 NPYKVI--IGSPDL--KANHAI---------------------RQ----------------------HVDIVSESQKYNK 333 (433)
Q Consensus 301 ~~~~~~--~~~~~~--~~~~~~---------------------~~----------------------~~~~~~~~~k~~~ 333 (433)
...... +..... .....+ .+ .-..+....|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 000000 000000 000000 00 0001122456666
Q ss_pred HHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEccccccCCC
Q 013965 334 LVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARGLG 409 (433)
Q Consensus 334 l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~---~~iLvaT~~~~~Gld 409 (433)
|.+++..+. .+.++|||++.....+.|.+.|...++....+||+++..+|..+++.|++.. ..+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 666776543 4569999999999999999999999999999999999999999999998633 357999999999999
Q ss_pred c--cCeEEEEcCCCcccccccCC
Q 013965 410 N--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 410 i--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
+ +++||+||.|++....+++.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAi 578 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQ 578 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHH
Confidence 9 99999999999988776543
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.5e-23 Score=208.88 Aligned_cols=292 Identities=18% Similarity=0.191 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|++.|.-+.-.+..|+ ++.+.||+|||+++.+|++..... |..+-|++|+.-||.|-++.+..+...++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 57888887776666665 899999999999999999888776 77899999999999999999999999999
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-HHHHcCC------cccccceeEeeccchhhh-cCC----------
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESHN------TNLRRVTYLVLDEADRML-DMG---------- 262 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~------~~l~~~~~lVvDEah~~~-~~~---------- 262 (433)
+++.++.++.+...... .-.++|+++|...|- ++|+... ...+.+.+.||||+|.++ |..
T Consensus 150 l~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred CeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 99999988765544332 346899999998763 4444321 124568899999999744 100
Q ss_pred -----cHHHHHHHHHhcC--------------------------------------------------------------
Q 013965 263 -----FEPQIKKILSQIR-------------------------------------------------------------- 275 (433)
Q Consensus 263 -----~~~~~~~i~~~~~-------------------------------------------------------------- 275 (433)
+...+..++..+.
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0000111110000
Q ss_pred --------------------------------------------------C----------------CCcEEEEEeccch
Q 013965 276 --------------------------------------------------P----------------DRQTLYWSATWPK 289 (433)
Q Consensus 276 --------------------------------------------------~----------------~~~~l~~SAT~~~ 289 (433)
+ -.++.+||.|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 0 0144566666655
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCC
Q 013965 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDG 368 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~ 368 (433)
+..++...|.-+-+.+ .... +..........+....+|...+.+.+... ..+.|+||||+|++.++.++..|.+.+
T Consensus 388 e~~Ef~~iY~l~vv~I--Ptnk-p~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVITI--PTNR-PVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEEc--CCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4444444443332211 1110 11111112334556788888998888653 456799999999999999999999999
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-----cC-----eEEEEcCCCcccccccC
Q 013965 369 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-----CA-----CVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 369 ~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-----~~-----~Vi~~d~p~~~~~~l~~ 429 (433)
+++..+|+++...++..+.++++.|. |+|||++++||+|| +. +||++++|.+...+...
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999888888888887777 99999999999999 45 99999999998777544
No 104
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=8.5e-23 Score=206.26 Aligned_cols=285 Identities=18% Similarity=0.192 Sum_probs=204.3
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCc
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKI 201 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~ 201 (433)
...+.+.+..+.+.+.++++++||||||+..-..+|+...... ..+.++|..|+|--|..+++++.. .+...+-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 5667778888889999999999999999976666677665432 477899999999999999988775 3333332
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
.+..-....+ .......+++||.|.|++.+.. ...+..+++||+||+| |-.+.+|...+.+.+...+++.++
T Consensus 250 ~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 2221111111 1123478999999999999988 4558999999999999 667778888888888888899999
Q ss_pred EEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccc--------------cceeee------------eeccC---hhHHH
Q 013965 281 LYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKAN--------------HAIRQH------------VDIVS---ESQKY 331 (433)
Q Consensus 281 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~------------~~~~~---~~~k~ 331 (433)
|+||||+. .+.+...|...|...+.+....... ....+. +.... +.+-+
T Consensus 323 ILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 323 ILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred EEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999986 4444444444444433222110000 000000 01111 12233
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccc
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 404 (433)
..++..+......+.+|||.+++.++..+.+.|... .+-+.++|+.|+..++..+++....|..+|++||+++
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 344444444444568999999999999999999642 2567789999999999999999999999999999999
Q ss_pred ccCCCccCeEEEEcCCC
Q 013965 405 ARGLGNCACVIIVLCTF 421 (433)
Q Consensus 405 ~~Gldi~~~Vi~~d~p~ 421 (433)
+.+|.|.++|+++|.=.
T Consensus 481 ETSITIdDVvyVIDsG~ 497 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGL 497 (924)
T ss_pred hhcccccCeEEEEecCe
Confidence 99999977777776544
No 105
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1e-21 Score=188.65 Aligned_cols=268 Identities=21% Similarity=0.244 Sum_probs=184.1
Q ss_pred HHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceE
Q 013965 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKS 203 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~ 203 (433)
+-.+.+..+.+++.+++.|+||||||+ ++|-+.. +..+.. ..++.|..|+|.-|..+++++.. .+...|-.+
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~--eaG~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLA--EAGFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHH--hccccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 345666677788999999999999999 5664332 222212 22399999999988888877654 333333333
Q ss_pred EE--EECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 204 TC--IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 204 ~~--~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
.. -+.+.. .....|.+.|.|.|++.+..++. |+++++||+|||| |-+..+..--+.+-+.+.+++.++
T Consensus 128 GY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 128 GYTIRFEDST--------SKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred eeEEEecccC--------CCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 22 222211 23478999999999998877554 8999999999999 544444433333334455688999
Q ss_pred EEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHH----HHHHhhcCCCeEEEEeCCccc
Q 013965 281 LYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV----KLLEDIMDGSRILIFMDTKKG 356 (433)
Q Consensus 281 l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~----~~l~~~~~~~~~lVF~~s~~~ 356 (433)
|++|||+. .+.+...|...|+..+.+.. ..++..+...+..+-....+ ++... .+.+-+|||....++
T Consensus 199 IimSATld--a~kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 199 IIMSATLD--AEKFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLT-EPPGDILVFLTGQEE 270 (674)
T ss_pred EEEeeeec--HHHHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHcc-CCCCCEEEEeCCHHH
Confidence 99999984 45555555554655544432 22333333333333333333 33333 344579999999999
Q ss_pred HHHHHHHHHhC------C--CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE
Q 013965 357 CDQITRQLRMD------G--WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII 416 (433)
Q Consensus 357 ~~~l~~~L~~~------~--~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~ 416 (433)
++.+++.|.+. + .-+.++||.++.+++.++++.-..|..+|++||+++++.|.| +.+||.
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 99999999764 1 135789999999999999999999999999999999999999 555544
No 106
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.89 E-value=1.3e-21 Score=171.61 Aligned_cols=187 Identities=44% Similarity=0.637 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 117 AGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.++..++++|.++++.++.. +++++.++||+|||.++..+++..+.... ..++||++|+++++.|+...+.++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 46778999999999999998 99999999999999998888888776532 467999999999999999999988
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCC-cEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 274 (433)
+...........++.........+..+. +++++|++.+.+.+........+++++|+||+|.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7665534455555555455555555666 999999999999988876667889999999999988766888899998888
Q ss_pred CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCC
Q 013965 275 RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (433)
Q Consensus 275 ~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (433)
++..+++++|||+++........++.....+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88999999999999999999998888766665443
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=1.1e-21 Score=202.29 Aligned_cols=294 Identities=17% Similarity=0.197 Sum_probs=193.1
Q ss_pred CcHHHHHHHHhHhcC---C-cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 122 PTPIQAQGWPMALKG---R-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g---~-~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
..+.|..++..+.+. . .+++.||||+|||.+.+++++..+... .....+++++.|+++++++++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 488999999888753 4 789999999999999998888776652 12478999999999999999999998655
Q ss_pred CCCceEEEEECCccChHhHHH-----h---------hcCCcEEEeChHHHHHHHHcCC-cc-c--ccceeEeeccchhhh
Q 013965 198 SSKIKSTCIYGGVPKGPQVRD-----L---------QKGVEIVIATPGRLIDMLESHN-TN-L--RRVTYLVLDEADRML 259 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~-----~---------~~~~~Iiv~Tp~~l~~~l~~~~-~~-l--~~~~~lVvDEah~~~ 259 (433)
...+.....++.......... . .....+.++||-.+........ .. + -..+.+|+||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 433322212222111100000 0 0123455556554444221111 11 1 124789999999877
Q ss_pred cCCcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcc-ccc-ceeeeeeccChhHH--HHHH
Q 013965 260 DMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLK-ANH-AIRQHVDIVSESQK--YNKL 334 (433)
Q Consensus 260 ~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k--~~~l 334 (433)
+......+..++..+ .-+..+|++|||+|+...+.....+.....+........ ... .+.+. ...+..+. ....
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~ 430 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK-ERVDVEDGPQEELI 430 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc-cchhhhhhhhHhhh
Confidence 663333444443333 457899999999999999888887766544433211100 000 11110 00111111 1223
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHh----cCCCCEEEEccccccCCCc
Q 013965 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFK----AGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~----~g~~~iLvaT~~~~~Gldi 410 (433)
.........+++++|.|||++.|..++..|+..+.++..+||.+...+|.+.+++.. .+...|+|||++.+.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 333445566789999999999999999999998778999999999999998887654 5678899999999999999
Q ss_pred -cCeEEEEcCC
Q 013965 411 -CACVIIVLCT 420 (433)
Q Consensus 411 -~~~Vi~~d~p 420 (433)
.+.+|-==.|
T Consensus 511 dfd~mITe~aP 521 (733)
T COG1203 511 DFDVLITELAP 521 (733)
T ss_pred ccCeeeecCCC
Confidence 8887753333
No 108
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=1.3e-20 Score=198.19 Aligned_cols=303 Identities=21% Similarity=0.231 Sum_probs=189.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
+++.+.+.+...||. +||.|.+.+. .+..++++++.||||+|||++|++|++.... . +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-------CCeEEEEeCc
Confidence 344667777778886 7999998666 4456889999999999999999999988765 1 4579999999
Q ss_pred HHHHHHHHH-HHHHhccCC--CceEEEEECCccCh---------------H-----------------------------
Q 013965 182 RELAVQIQQ-ESTKFGASS--KIKSTCIYGGVPKG---------------P----------------------------- 214 (433)
Q Consensus 182 r~L~~q~~~-~~~~~~~~~--~~~~~~~~g~~~~~---------------~----------------------------- 214 (433)
++|..|+.. ++..+.... .++++.+.|..+.- .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 455443332 36666655532210 0
Q ss_pred ---------------------------hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-----
Q 013965 215 ---------------------------QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----- 262 (433)
Q Consensus 215 ---------------------------~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~----- 262 (433)
..+.....++||||+...|+..+.....-+...+++||||||++.+.-
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 001111247899999998887665443335667899999999865310
Q ss_pred --c-----HHH----------------------------------------------------------------HHHHH
Q 013965 263 --F-----EPQ----------------------------------------------------------------IKKIL 271 (433)
Q Consensus 263 --~-----~~~----------------------------------------------------------------~~~i~ 271 (433)
+ ... +...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 00000
Q ss_pred Hh---------------------c---------------------------CCCCcEEEEEeccchH-HHHHHHHhcCCC
Q 013965 272 SQ---------------------I---------------------------RPDRQTLYWSATWPKE-VEHLARQYLYNP 302 (433)
Q Consensus 272 ~~---------------------~---------------------------~~~~~~l~~SAT~~~~-~~~~~~~~~~~~ 302 (433)
.. . +....+|++|||+... -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0124678999999631 122333333321
Q ss_pred -eE-EEeCCCCcccccceeeeeec---------cChhHHHHHHHHHHHhh--cCCCeEEEEeCCcccHHHHHHHHHh---
Q 013965 303 -YK-VIIGSPDLKANHAIRQHVDI---------VSESQKYNKLVKLLEDI--MDGSRILIFMDTKKGCDQITRQLRM--- 366 (433)
Q Consensus 303 -~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~k~~~l~~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~--- 366 (433)
.. ...... ......+..+.+ .+..+....+.+.|... ...+++|||++|.+..+.++..|..
T Consensus 622 ~~~~~~~~~s--pf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIEPT--PLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceecCC--CCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 11 111100 111011111111 11223333444444332 1346899999999999999999975
Q ss_pred -CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc----cCeEEEEcCCCc
Q 013965 367 -DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 367 -~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi----~~~Vi~~d~p~~ 422 (433)
.++. .+..+.. .+|..++++|++++..||++|+.+++|||+ ..+||+..+|..
T Consensus 700 ~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 700 FEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred ccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCC
Confidence 2333 3333333 578999999999999999999999999999 778899999964
No 109
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.1e-20 Score=180.06 Aligned_cols=275 Identities=19% Similarity=0.226 Sum_probs=197.6
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hc----c
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FG----A 197 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~----~ 197 (433)
.++-.+.+.++..++.++|.|+||||||+ ++|-+.+- ... ...|.++-|..|+|.-|..++.++.+ .+ .
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~E--aGy--tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYE--AGY--TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHh--ccc--ccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 45666777788889999999999999999 67754432 211 12255699999999999998877654 32 2
Q ss_pred CCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHHHHHHHhcCC
Q 013965 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~ 276 (433)
..|+++. +.+ ......-|-++|.|+|++-+... ..|.++++||||||| |-+..+..-.+.+-+..++|
T Consensus 341 eVGYsIR--FEd--------cTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 341 EVGYSIR--FED--------CTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred ccceEEE--ecc--------ccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 2232221 111 11234678899999999877764 448999999999999 66666666667777788899
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 013965 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (433)
Q Consensus 277 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s 353 (433)
+.++++.|||+. .+.+...|-.-|+....+.. ..+...+...++.+-+++.+.-+.++ .+.+-+|||...
T Consensus 410 dLKllIsSAT~D--AekFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltG 482 (902)
T KOG0923|consen 410 DLKLLISSATMD--AEKFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTG 482 (902)
T ss_pred cceEEeeccccC--HHHHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEecc
Confidence 999999999984 45555554445655544332 22334445556666666655544332 244679999999
Q ss_pred cccHHHHHHHHHhC---------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccCeEEEEcCCC
Q 013965 354 KKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCACVIIVLCTF 421 (433)
Q Consensus 354 ~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~~Vi~~d~p~ 421 (433)
.++.+...+.|... .+-++++|+.++.+.+..|++--..|-.+|++||+++++.|.|...++++|.-.
T Consensus 483 QeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 483 QEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred HHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 99999888887642 356788999999999999999999999999999999999999955555555443
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.87 E-value=1.6e-20 Score=181.74 Aligned_cols=292 Identities=23% Similarity=0.290 Sum_probs=199.8
Q ss_pred CCcHHHHHHHHhHhc----CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+++||.+.++++.+ |-++|+..++|.|||+. .|++|.++.... .-.|| -||+||...|. .|..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GP-fLVi~P~StL~-NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGP-FLVIAPKSTLD-NWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCC-eEEEeeHhhHH-HHHHHHHHhC
Confidence 589999999998764 77899999999999997 667777766521 11255 58999987665 5888999998
Q ss_pred cCCCceEEEEECCccChHhH-HHh--hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh
Q 013965 197 ASSKIKSTCIYGGVPKGPQV-RDL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ 273 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~-~~~--~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~ 273 (433)
+. +++.+++|+....... +.+ ....+|+|||++..+.--. .+.--.++++|||||||+-.. ...+.++++.
T Consensus 241 P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 PS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred CC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 76 7888888876433221 111 2368999999998764311 111234799999999997654 3334455555
Q ss_pred cCCCCcEEEEEeccch-HHH------------------------------------------------------------
Q 013965 274 IRPDRQTLYWSATWPK-EVE------------------------------------------------------------ 292 (433)
Q Consensus 274 ~~~~~~~l~~SAT~~~-~~~------------------------------------------------------------ 292 (433)
+..+. .+++|.|+-. ++.
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 54333 3556666210 000
Q ss_pred ---------------------------------------------HHHHHhcCCCeEEEeCCCCcccccceeeeeeccCh
Q 013965 293 ---------------------------------------------HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (433)
Q Consensus 293 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (433)
-..+..+.+|+.+.. .+.... ....-..+..
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg~p---yttdehLv~n 469 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPGPP---YTTDEHLVTN 469 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCCCC---CCcchHHHhc
Confidence 001122223322211 100000 0001112334
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEccc
Q 013965 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDV 403 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~---~~iLvaT~~ 403 (433)
..|+..|-++|..+. .+++||||.+-....+-|.++..-.++....+.|.++.++|...++.|+... .-+|++|.+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 566777777776644 4679999999999999999998888999999999999999999999999765 338999999
Q ss_pred cccCCCc--cCeEEEEcCCCcccccccC
Q 013965 404 AARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 404 ~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
.+-|||+ +++||.||-.++.-.-|++
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQA 577 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQA 577 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHH
Confidence 9999999 9999999998887666553
No 111
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=8.8e-20 Score=182.21 Aligned_cols=287 Identities=23% Similarity=0.308 Sum_probs=197.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 110 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
+.+.+++.....|+..|.--...+..|++.-+.||||.|||+- .+.+-..+... |.++++|+||..|+.|+.
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~k-------gkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAKK-------GKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHhc-------CCeEEEEecCHHHHHHHH
Confidence 3444454444489999998888999999999999999999973 33333333322 779999999999999999
Q ss_pred HHHHHhccCCC-ceEEEEECCc-cChHh---HHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-
Q 013965 190 QESTKFGASSK-IKSTCIYGGV-PKGPQ---VRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG- 262 (433)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~~g~~-~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~- 262 (433)
+.+++++...+ ..+..+|.+. +.... ...+. .+.||+|+|.+-|...+..-. --+++++++|++|.++..+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccc
Confidence 99999886655 4444434433 33322 22222 368999999876665554311 1369999999999766432
Q ss_pred ----------cHHH-------HHHHHHhc------------------------CCCCcEEEEEeccchH--HHHHHHHhc
Q 013965 263 ----------FEPQ-------IKKILSQI------------------------RPDRQTLYWSATWPKE--VEHLARQYL 299 (433)
Q Consensus 263 ----------~~~~-------~~~i~~~~------------------------~~~~~~l~~SAT~~~~--~~~~~~~~~ 299 (433)
|... +.++...+ ....+++..|||..+. ...+.+.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 2221 11111111 2346889999997442 334556655
Q ss_pred CCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCC---cccHHHHHHHHHhCCCceEEEcC
Q 013965 300 YNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDT---KKGCDQITRQLRMDGWPALSIHG 376 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~lh~ 376 (433)
+.. ++... ....++...+. ...-...+.++++.... -.|||++. ++.++++++.|+..|+.+..+|+
T Consensus 301 gFe----vG~~~-~~LRNIvD~y~---~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 GFE----VGSGG-EGLRNIVDIYV---ESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred CCc----cCccc-hhhhheeeeec---cCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 432 22221 11122222221 12556666777777644 47999999 99999999999999999999998
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEc----cccccCCCc---cCeEEEEcCCC
Q 013965 377 DKSQAERDWVLSEFKAGKSPIMTAT----DVAARGLGN---CACVIIVLCTF 421 (433)
Q Consensus 377 ~~~~~~r~~~~~~f~~g~~~iLvaT----~~~~~Gldi---~~~Vi~~d~p~ 421 (433)
. ..+.++.|..|++++||.. .++-||||+ ++++|.++.|.
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 4 3678999999999999987 489999999 99999999994
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2e-19 Score=172.04 Aligned_cols=265 Identities=19% Similarity=0.203 Sum_probs=183.1
Q ss_pred hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEE--EEEC
Q 013965 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKST--CIYG 208 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~--~~~g 208 (433)
.+..++.+++.++||||||+. +|-+ +... .-.++..+-|..|+|.-|..+++++.. ++...+-.+. .-+.
T Consensus 367 ~ir~n~vvvivgETGSGKTTQ--l~Qy--L~ed---GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 367 VIRENQVVVIVGETGSGKTTQ--LAQY--LYED---GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFE 439 (1042)
T ss_pred HHhhCcEEEEEecCCCCchhh--hHHH--HHhc---ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEee
Confidence 344578899999999999994 4432 2222 222355889999999999999988765 4333332221 1111
Q ss_pred CccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch-hhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 209 GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD-RMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 209 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
+.. .....|-++|-|.|++..-.+. .|.++++||+|||| +-+..+...-+.+.+..-+.+.++|..|||+
T Consensus 440 dvT--------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 440 DVT--------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred ecC--------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccc
Confidence 111 1346799999999987655533 48889999999999 5555555555556666667899999999998
Q ss_pred chHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHH
Q 013965 288 PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQL 364 (433)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L 364 (433)
+.+.+...|.+.|...+.+... .+...+...+.++-.++.+.-.-.+ ...+-+|||....++++..+..+
T Consensus 511 --~a~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i 583 (1042)
T KOG0924|consen 511 --DAQKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDII 583 (1042)
T ss_pred --cHHHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHH
Confidence 4566776666677665544422 2223333334444444443322111 13356999999999888777666
Q ss_pred Hh----------CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcC
Q 013965 365 RM----------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLC 419 (433)
Q Consensus 365 ~~----------~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~ 419 (433)
.. .++.+.++++.++..-+.++++.-..|..+++|||+++++.|.| +.+||.-++
T Consensus 584 ~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 584 KEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred HHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 53 25788999999999999999999999999999999999999999 777776443
No 113
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=6.6e-19 Score=171.51 Aligned_cols=290 Identities=20% Similarity=0.218 Sum_probs=194.3
Q ss_pred CCcHHHHHHHHhHhc----CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+.++|++++.++.+ +..-|+-..+|.|||.. .+..|..+.+.... -..+|||||. .+..||..++..|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 357999999999874 55688899999999986 55555555543211 2459999996 78899999999998
Q ss_pred cCCCceEEEEECCccCh--------Hh-----HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 197 ASSKIKSTCIYGGVPKG--------PQ-----VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~--------~~-----~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
+. .++..+++..+.. .. .+.......|+|+|++.+.-. ...+.-..++++|+||.|++-...
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc-
Confidence 76 6677777655421 01 111123567999998665322 222333458999999999875543
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeccch-HHH--------------------------------------------------
Q 013965 264 EPQIKKILSQIRPDRQTLYWSATWPK-EVE-------------------------------------------------- 292 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~SAT~~~-~~~-------------------------------------------------- 292 (433)
..+-..+.++ +..+.+++|.|+-. .+.
T Consensus 354 -s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 2233333333 23445556666210 000
Q ss_pred ---------------------------------------HHHH--------------------------HhcCCCeEEEe
Q 013965 293 ---------------------------------------HLAR--------------------------QYLYNPYKVII 307 (433)
Q Consensus 293 ---------------------------------------~~~~--------------------------~~~~~~~~~~~ 307 (433)
.+.. ..+.+|....-
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0000 11111111100
Q ss_pred CCCCcccccceeeee---eccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHH-hCCCceEEEcCCCCHHH
Q 013965 308 GSPDLKANHAIRQHV---DIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLR-MDGWPALSIHGDKSQAE 382 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~---~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~lh~~~~~~~ 382 (433)
.. ....+.- .......|+..+.+++.... .+.++|+|.+++...+.+..+|. ..++.+..+.|..+...
T Consensus 512 ~~------~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 512 RD------EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred cc------cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 00 0000000 12234567888888887754 46699999999999999999999 68999999999999999
Q ss_pred HHHHHHHHhcCCCC--EEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 383 RDWVLSEFKAGKSP--IMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 383 r~~~~~~f~~g~~~--iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
|..++++|+++... +|++|.+.+-|+|+ ++.||+||+.++.+.-.+.
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QA 636 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQA 636 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHH
Confidence 99999999987754 79999999999999 9999999999988765543
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=2.6e-19 Score=182.84 Aligned_cols=284 Identities=15% Similarity=0.140 Sum_probs=163.5
Q ss_pred CcHHHHHHHHhHhc----------CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH
Q 013965 122 PTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~----------g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~ 191 (433)
++++|.+|+..+.. .+..++.++||||||++.+..+. .+... ...+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 68999999987642 25799999999999997554443 33221 2368999999999999999999
Q ss_pred HHHhccCCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcCC--ccccc-ceeEeeccchhhhcCCcHHHH
Q 013965 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRR-VTYLVLDEADRMLDMGFEPQI 267 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~-~~~lVvDEah~~~~~~~~~~~ 267 (433)
+.+++.... .+..+...-...+. ....|+|+|.++|...+.... ..... -.+||+||||+.... .+
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 999764210 11111111112222 246899999999986443311 11111 138999999986433 33
Q ss_pred HHHHHhcCCCCcEEEEEeccchHHHHHHHHhc----CCCeEEE-----------------eCCCCccc-cccee----ee
Q 013965 268 KKILSQIRPDRQTLYWSATWPKEVEHLARQYL----YNPYKVI-----------------IGSPDLKA-NHAIR----QH 321 (433)
Q Consensus 268 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~----~~~~~~~-----------------~~~~~~~~-~~~~~----~~ 321 (433)
.+.+...-++...++||||+-..........+ +++.... ........ ...+. ..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 34443333678899999998432111000111 1111111 00000000 00000 00
Q ss_pred eec-----------------------cChhHHHHHHHHHH----HhhcC--CCeEEEEeCCcccHHHHHHHHHhC-----
Q 013965 322 VDI-----------------------VSESQKYNKLVKLL----EDIMD--GSRILIFMDTKKGCDQITRQLRMD----- 367 (433)
Q Consensus 322 ~~~-----------------------~~~~~k~~~l~~~l----~~~~~--~~~~lVF~~s~~~~~~l~~~L~~~----- 367 (433)
+.. .........+.+.+ ..... ..+++|||.++.+|..+++.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 00001111222211 11112 368999999999999999988654
Q ss_pred CCceEEEcCCCCHH---------------------HHHHHHHHHhc-CCCCEEEEccccccCCCc-cCeEEEEcCCC
Q 013965 368 GWPALSIHGDKSQA---------------------ERDWVLSEFKA-GKSPIMTATDVAARGLGN-CACVIIVLCTF 421 (433)
Q Consensus 368 ~~~~~~lh~~~~~~---------------------~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~ 421 (433)
+..+..+++....+ ....++++|++ +..+|||+++++.+|+|. .-.++.+|-|.
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccc
Confidence 24456666654332 22478889976 688999999999999999 44445555554
No 115
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.4e-18 Score=169.04 Aligned_cols=273 Identities=19% Similarity=0.243 Sum_probs=176.8
Q ss_pred HHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hcc-CCCceEE
Q 013965 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGA-SSKIKST 204 (433)
Q Consensus 127 ~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~-~~~~~~~ 204 (433)
++.++++..+..+||||+||||||+ ++|-+.+-..-.......+..+=|..|+|.-|..+++++.. ++. ...+...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4555667778889999999999999 56654332211111112244788999999998888877654 333 2223444
Q ss_pred EEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh-hhcCC----cHHHHHHHHHhcC----
Q 013965 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-MLDMG----FEPQIKKILSQIR---- 275 (433)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~-~~~~~----~~~~~~~i~~~~~---- 275 (433)
.-+.++- .....|.++|.|.|+.-+.++ +.|.+++.||+||||. -...+ ....+-.+-....
T Consensus 340 IRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444432 245789999999999998884 4589999999999993 22222 2222222222222
Q ss_pred --CCCcEEEEEeccchHHHHHHH--HhcCC-CeEEEeCCCCcccccceeeeeeccCh----hHHHHHHHHHHHhhcCCCe
Q 013965 276 --PDRQTLYWSATWPKEVEHLAR--QYLYN-PYKVIIGSPDLKANHAIRQHVDIVSE----SQKYNKLVKLLEDIMDGSR 346 (433)
Q Consensus 276 --~~~~~l~~SAT~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~k~~~l~~~l~~~~~~~~ 346 (433)
...++|+||||+. +.++.. .++.. |..+.+...... +..++..... .+.......+.+.+ +.+.
T Consensus 411 ~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP----VsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP----VSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGG 483 (1172)
T ss_pred ccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc----eEEEeccCCCchHHHHHHHHHHHHhhcC-CCCc
Confidence 2568999999984 344432 22222 222333322211 1222221111 22344444455554 5567
Q ss_pred EEEEeCCcccHHHHHHHHHhC-----------------------------------------------------------
Q 013965 347 ILIFMDTKKGCDQITRQLRMD----------------------------------------------------------- 367 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~----------------------------------------------------------- 367 (433)
+|||+....+++.|+..|++.
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 999999999999999999861
Q ss_pred ----------------------------------------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccC
Q 013965 368 ----------------------------------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (433)
Q Consensus 368 ----------------------------------------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 407 (433)
..-+.++++-++.+++.++++.-..|..=++|||+++++.
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 0235678888999999999999999999999999999999
Q ss_pred CCc--cCeEEEE
Q 013965 408 LGN--CACVIIV 417 (433)
Q Consensus 408 ldi--~~~Vi~~ 417 (433)
|.| +.+||..
T Consensus 644 LTIPgIkYVVD~ 655 (1172)
T KOG0926|consen 644 LTIPGIKYVVDC 655 (1172)
T ss_pred cccCCeeEEEec
Confidence 999 6666653
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.82 E-value=3.3e-19 Score=175.54 Aligned_cols=282 Identities=17% Similarity=0.155 Sum_probs=174.1
Q ss_pred CCCcHHHHHHHHhHh----cC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 120 FEPTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l----~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..+|.+|..||..+. .| +.+++++.||+|||.+ .+.++..+... +.-.++|+|+-+++|+.|....+.+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 368999999997755 34 4599999999999998 44555555533 2367899999999999999999999
Q ss_pred hccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-----CcccccceeEeeccchhhhcCCcHHHHHH
Q 013965 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-----NTNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (433)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~~~~lVvDEah~~~~~~~~~~~~~ 269 (433)
+.+.... +..+.+ .. ....++|.++|++++...+... .+....+++||+|||||- ....+..
T Consensus 238 ~~P~~~~-~n~i~~-~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~ 304 (875)
T COG4096 238 FLPFGTK-MNKIED-KK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSS 304 (875)
T ss_pred hCCCccc-eeeeec-cc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHH
Confidence 8766432 112211 11 1125899999999999877654 234556899999999984 3445557
Q ss_pred HHHhcCCCCcEEEEEeccchHHHHHHHHhc-CCCeEEEe----------------------CCCCcccccce----e---
Q 013965 270 ILSQIRPDRQTLYWSATWPKEVEHLARQYL-YNPYKVII----------------------GSPDLKANHAI----R--- 319 (433)
Q Consensus 270 i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~~~~~~~----------------------~~~~~~~~~~~----~--- 319 (433)
|+..+..-. ++++||+......-.-.++ +.|...+. ..... .+... .
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~-~~~~~serek~~g 381 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGW-KPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCc-CcCccchhhhhhc
Confidence 766663333 3449998664433333333 33322211 00000 00000 0
Q ss_pred -------eeeecc------ChhHHHHHHHHHHHhhcC-------CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEE
Q 013965 320 -------QHVDIV------SESQKYNKLVKLLEDIMD-------GSRILIFMDTKKGCDQITRQLRMD-----GWPALSI 374 (433)
Q Consensus 320 -------~~~~~~------~~~~k~~~l~~~l~~~~~-------~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l 374 (433)
+.+... .-....+.+...+.+.+. -+|+||||.+..+|+.+...|... +--+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 000000 001123333333333222 248999999999999999999764 3446677
Q ss_pred cCCCCHHHHHHHHHHHhc--CCCCEEEEccccccCCCc--cCeEEEEcCCCcccc
Q 013965 375 HGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLGN--CACVIIVLCTFVLYL 425 (433)
Q Consensus 375 h~~~~~~~r~~~~~~f~~--g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~ 425 (433)
.++..+ -...++.|.. .-.+|.|+.+++.+|+|+ +-++|.+..=.|...
T Consensus 462 T~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktk 514 (875)
T COG4096 462 TGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTK 514 (875)
T ss_pred eccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHH
Confidence 777443 2334555554 334589999999999999 666665555444443
No 117
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=7.9e-20 Score=185.07 Aligned_cols=352 Identities=20% Similarity=0.252 Sum_probs=213.4
Q ss_pred CccccccccChhhccCCHHHHHHHHHhcC-ce--eccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHh
Q 013965 58 PFEKNFYVESPSVAAMSEREVEEYRQQRE-IT--VEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL 134 (433)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~--~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l 134 (433)
+++.+.|.....+...-..++..+..... .. ..+...-.+...|..+...+..+. | .+++.+|.+.+++++
T Consensus 310 pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~ 383 (1373)
T KOG0384|consen 310 PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLL 383 (1373)
T ss_pred CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHH
Confidence 34555555555555554555555544321 11 111122122233444433333322 2 579999999999876
Q ss_pred ----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCc
Q 013965 135 ----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (433)
Q Consensus 135 ----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 210 (433)
.++++|+..++|.|||+. .+..|..+..... -.|| .|||+|...+ ..|..++..+. .+++++++|..
T Consensus 384 ~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gp-flvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~ 454 (1373)
T KOG0384|consen 384 YSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGP-FLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNL 454 (1373)
T ss_pred HHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCC-eEEEeehhhh-HHHHHHHHHHh---hhceeeeecch
Confidence 478999999999999986 5555555543211 1255 5888997555 45788888877 58899999988
Q ss_pred cChHhHHHhh----c-----CCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEE
Q 013965 211 PKGPQVRDLQ----K-----GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTL 281 (433)
Q Consensus 211 ~~~~~~~~~~----~-----~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l 281 (433)
...+.++... . ..+++++|++.++.-... +.--.+.++++||||++-.. ...+...+..++-+. .+
T Consensus 455 ~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rl 529 (1373)
T KOG0384|consen 455 ESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RL 529 (1373)
T ss_pred hHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-ee
Confidence 7776665542 1 478999999887642211 11123689999999997654 233333344444333 45
Q ss_pred EEEeccc-hHHHHHHHHh-cCCCeEEEe--------------------------------CCCCcccccceeeeee----
Q 013965 282 YWSATWP-KEVEHLARQY-LYNPYKVII--------------------------------GSPDLKANHAIRQHVD---- 323 (433)
Q Consensus 282 ~~SAT~~-~~~~~~~~~~-~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~---- 323 (433)
++|.|+- +.++++..-. +-.|..+.. ...+...+...++.+.
T Consensus 530 litgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels 609 (1373)
T KOG0384|consen 530 LITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELS 609 (1373)
T ss_pred eecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehh
Confidence 5666632 2222221100 000000000 0000000000000000
Q ss_pred --------------------------------------------------------------------ccChhHHHHHHH
Q 013965 324 --------------------------------------------------------------------IVSESQKYNKLV 335 (433)
Q Consensus 324 --------------------------------------------------------------------~~~~~~k~~~l~ 335 (433)
++..+.|+..|-
T Consensus 610 ~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLD 689 (1373)
T KOG0384|consen 610 DLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLD 689 (1373)
T ss_pred HHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHH
Confidence 000011111222
Q ss_pred HHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEccccccCCCc-
Q 013965 336 KLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK---SPIMTATDVAARGLGN- 410 (433)
Q Consensus 336 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~---~~iLvaT~~~~~Gldi- 410 (433)
++|..+. .+++||||.+-....+-|+++|...+|+.-.|.|.+..+.|...++.|++.. ..+|+||.+.+-|||+
T Consensus 690 KLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 690 KLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred HHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 3333333 4579999999999999999999999999999999999999999999999744 5599999999999999
Q ss_pred -cCeEEEEcCCCcccccccC
Q 013965 411 -CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~ 429 (433)
+++||+||-.++.---|++
T Consensus 770 tADTVIIFDSDWNPQNDLQA 789 (1373)
T KOG0384|consen 770 TADTVIIFDSDWNPQNDLQA 789 (1373)
T ss_pred ccceEEEeCCCCCcchHHHH
Confidence 9999999998877655543
No 118
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=3.5e-17 Score=170.18 Aligned_cols=287 Identities=20% Similarity=0.207 Sum_probs=179.1
Q ss_pred CCCCCCcHHHHHHHHhH----hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH-HHH
Q 013965 117 AGFFEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQE 191 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~----l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~-~~~ 191 (433)
.|| ++|+-|.+....+ ..++.+++.|+||+|||++|++|++.... ++++||++||++|+.|+ .+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~---------~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD---------QRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC---------CCcEEEEeCcHHHHHHHHHHH
Confidence 344 6799999955443 34788999999999999999999887531 56899999999999999 466
Q ss_pred HHHhccCCCceEEEEECCccChHh--------------------------------------------------------
Q 013965 192 STKFGASSKIKSTCIYGGVPKGPQ-------------------------------------------------------- 215 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------------------------- 215 (433)
+..+....++++.++.|+.+.-..
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 777766667777666654321000
Q ss_pred ---------------HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-----c-------HH---
Q 013965 216 ---------------VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----F-------EP--- 265 (433)
Q Consensus 216 ---------------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-----~-------~~--- 265 (433)
.+.-...++|+|++..-|...+.... .+...+++||||||++.+.. . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 00001236899999988777664443 36779999999999865311 0 00
Q ss_pred -----------------------------------------------HHHHH-----------HHh------c-------
Q 013965 266 -----------------------------------------------QIKKI-----------LSQ------I------- 274 (433)
Q Consensus 266 -----------------------------------------------~~~~i-----------~~~------~------- 274 (433)
.+..+ +.. +
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 00000 000 0
Q ss_pred --------------------CCCCcEEEEEeccc--hHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeec--------
Q 013965 275 --------------------RPDRQTLYWSATWP--KEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI-------- 324 (433)
Q Consensus 275 --------------------~~~~~~l~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 324 (433)
+....+|++|||++ +.. .+.+. ++-......... ....-.+.+..
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~-lGl~~~~~~~~~---~~~~~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADL-LGFEEYLFHKIE---KDKKQDQLVVVDQDMPLVT 625 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHH-cCCCccceecCC---CChHHccEEEeCCCCCCCC
Confidence 01236788888884 222 23322 222111100000 00111111111
Q ss_pred -cChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 325 -VSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 325 -~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..+.+..+.+.+.+... ..+++++|+++|.+..+.+++.|....+.+ ...|... .+..++++|++++..||++|+
T Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 11233344455544332 245789999999999999999997654444 4444322 256689999999889999999
Q ss_pred ccccCCCc----cCeEEEEcCCCc
Q 013965 403 VAARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 403 ~~~~Gldi----~~~Vi~~d~p~~ 422 (433)
.+.+|||+ ...||+..+|..
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFD 726 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCC
Confidence 99999999 456788888854
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.1e-17 Score=165.81 Aligned_cols=283 Identities=19% Similarity=0.207 Sum_probs=188.5
Q ss_pred CCcHHHHHHHHhHhcC----CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g----~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+++-|+.++..+... ...++.+.||||||.+|+-.+-..+.. |..+|+++|-.+|..|+.++++...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHHh
Confidence 5688999999998765 679999999999999988776666654 7899999999999999999999855
Q ss_pred cCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcC---CcHHHHHH
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM---GFEPQIKK 269 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~---~~~~~~~~ 269 (433)
. .++..++++.+..+....+ .....|+|+|-.. -...++++.+|||||-|.-... +.....+.
T Consensus 270 g---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-------lF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 G---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-------LFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred C---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-------hcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 3 6677777777666554444 3578999999321 1345789999999999954321 12222222
Q ss_pred --HHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHH-----HHHHHHHHHh-h
Q 013965 270 --ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQK-----YNKLVKLLED-I 341 (433)
Q Consensus 270 --i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~l~~~l~~-~ 341 (433)
++..-..++++|+-|||+.-+ ...+..-+....+........+.......+.+..+... ...|++.+++ .
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 233334688999999997544 44443222223333222221111112222332222222 2456666654 3
Q ss_pred cCCCeEEEEeCCcccHHHHH------------------------------------------------------------
Q 013965 342 MDGSRILIFMDTKKGCDQIT------------------------------------------------------------ 361 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~------------------------------------------------------------ 361 (433)
..+.++|+|.|.+.-+-.+.
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 45679999998886554442
Q ss_pred HHHHh--CCCceEEEcCCCCHH--HHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcc
Q 013965 362 RQLRM--DGWPALSIHGDKSQA--ERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVL 423 (433)
Q Consensus 362 ~~L~~--~~~~~~~lh~~~~~~--~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~ 423 (433)
+.|.+ .+.++..+.++.... .-+..++.|.+|+.+|||.|++++.|.|+ +..|.++|....+
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L 565 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL 565 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh
Confidence 22211 135566777766543 35678999999999999999999999999 8888888765543
No 120
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=4.6e-18 Score=157.18 Aligned_cols=301 Identities=18% Similarity=0.188 Sum_probs=187.7
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHH--HHHhcCCCCCCCCCCEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI--VHVNAQPFLAPGDGPIV 175 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l--~~~~~~~~~~~~~~~~~ 175 (433)
++.|...++++...+-+++..---.+..+.+.+..+.+++-++++++||||||+ ++|-+ ...... ...+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~-------~~~v 94 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSH-------LTGV 94 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhh-------ccce
Confidence 677888899998888887653333355666667777889999999999999998 55543 333322 2458
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEa 255 (433)
.+..|.|.-|.+++.++..-.+ +....-.|-. .. ...-.....=+-+||.+.|++...++.. +.++++||+|||
T Consensus 95 ~CTQprrvaamsva~RVadEMD---v~lG~EVGys-Ir-fEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDea 168 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMD---VTLGEEVGYS-IR-FEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEA 168 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhc---cccchhcccc-cc-ccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechh
Confidence 9999999999998877765322 1111111100 00 0000001122346777777766655444 789999999999
Q ss_pred h-hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHH
Q 013965 256 D-RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKL 334 (433)
Q Consensus 256 h-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 334 (433)
| |-+..+...-+.+-+..-+++.+++.+|||+- ..++ ..|+.++..+.+... ..++..+....+.+..+..
T Consensus 169 hERtlATDiLmGllk~v~~~rpdLk~vvmSatl~--a~Kf-q~yf~n~Pll~vpg~-----~PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNRPDLKLVVMSATLD--AEKF-QRYFGNAPLLAVPGT-----HPVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCCceEEEeecccc--hHHH-HHHhCCCCeeecCCC-----CceEEEecCCCChhHHHHH
Confidence 9 55554444444444444568999999999973 3333 445555444443321 2222233333344444444
Q ss_pred HHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhC---------CCceEEEcCCCCHHHHHHHHHHHhc---C--CCCE
Q 013965 335 VKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMD---------GWPALSIHGDKSQAERDWVLSEFKA---G--KSPI 397 (433)
Q Consensus 335 ~~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~lh~~~~~~~r~~~~~~f~~---g--~~~i 397 (433)
+..+-++ ...+-+|||..+.++++..++.+... ...+.++| +.++..+++--.. | ..+|
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 4333221 12457999999999999999988753 26678888 4455555543332 2 3569
Q ss_pred EEEccccccCCCccCeEEEEcCCCcccc
Q 013965 398 MTATDVAARGLGNCACVIIVLCTFVLYL 425 (433)
Q Consensus 398 LvaT~~~~~Gldi~~~Vi~~d~p~~~~~ 425 (433)
+|+|++++..+.+...|+++|.-.+.-.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqk 344 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQK 344 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhc
Confidence 9999999999999666666666554433
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3.8e-17 Score=161.33 Aligned_cols=275 Identities=19% Similarity=0.188 Sum_probs=188.7
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|++.|.-+.-.++.|+ |+.+.||+|||+++.+|++..... |..+-|++|+..||.|-++.+..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 344 67889988888888774 779999999999999998877765 7789999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-HHHHcCC------cccccceeEeeccchhhhcCC-------
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESHN------TNLRRVTYLVLDEADRMLDMG------- 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~------~~l~~~~~lVvDEah~~~~~~------- 262 (433)
..+++++.++.++.+....... -.|||+++|...+- ++|+... ...+.+.+.||||+|.++-..
T Consensus 144 ~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 9999999999887665433333 35899999987653 3333321 124568899999999744100
Q ss_pred --------cHHHHHHHHHhcC-----------------------------------------------------------
Q 013965 263 --------FEPQIKKILSQIR----------------------------------------------------------- 275 (433)
Q Consensus 263 --------~~~~~~~i~~~~~----------------------------------------------------------- 275 (433)
....+..++..+.
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0000000110000
Q ss_pred -----------------------------------------------------------CCCcEEEEEeccchHHHHHHH
Q 013965 276 -----------------------------------------------------------PDRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 276 -----------------------------------------------------------~~~~~l~~SAT~~~~~~~~~~ 296 (433)
--.++.+||.|...+.+++.+
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~ 381 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQ 381 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHH
Confidence 012456777777666665555
Q ss_pred HhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 297 QYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
-|--+-..+ .... ...........+....+|..++++-+... ..+.||||.|.|.+..+.++..|.+.|++...++
T Consensus 382 iY~l~Vv~I--Ptnk-p~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 382 FYDLGVSVI--PPNK-PNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred HhCCcEEEC--CCCC-CceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 554332211 1111 11111112234556778888888877554 5677999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCEEEEccccccCCCc
Q 013965 376 GDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLGN 410 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~-~~iLvaT~~~~~Gldi 410 (433)
+.-...+-+.+- ..|+ ..|-|||++++||-||
T Consensus 459 Ak~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDI 491 (764)
T PRK12326 459 AKNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDI 491 (764)
T ss_pred cCchHhHHHHHH---hcCCCCcEEEEecCCCCccCe
Confidence 874433322222 2343 3499999999999999
No 122
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.77 E-value=1.9e-17 Score=136.67 Aligned_cols=144 Identities=44% Similarity=0.577 Sum_probs=112.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... ...+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4689999999999998777776665431 2568999999999999999999987765 67777777776665555
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
.......+|+++|++.+...+.........++++|+||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567899999999999888877655566789999999999877655444333344456788999999995
No 123
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.76 E-value=7.1e-17 Score=157.31 Aligned_cols=293 Identities=23% Similarity=0.283 Sum_probs=191.1
Q ss_pred CCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
++.+||.-+++++. .+-+.|+..++|.|||.. .++.|..+..... .||+ |||||...| ..|..++.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~----~gpH-LVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN----PGPH-LVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC----CCCc-EEEecchhH-HHHHHHHHHhC
Confidence 47899999998865 356789999999999987 6666777665321 2554 888998666 55888999999
Q ss_pred cCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHc-CCcccccceeEeeccchhhhcCCcHHHHHHHH
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 271 (433)
+. +++...||......+++... .+.+|+++|+.-...--.. ..+.-.++.++|+||+|.+-+.. ...++.++
T Consensus 472 Ps--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 PS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred Cc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 86 78888888765544444332 2689999998654310000 01112458899999999866543 22233322
Q ss_pred HhcCCCCcEEEEEeccch-H------------------------------------------------------------
Q 013965 272 SQIRPDRQTLYWSATWPK-E------------------------------------------------------------ 290 (433)
Q Consensus 272 ~~~~~~~~~l~~SAT~~~-~------------------------------------------------------------ 290 (433)
. + +..+.+++|.|+-. +
T Consensus 549 ~-I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 S-I-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred c-c-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 2 1 24455666666210 0
Q ss_pred -----------------------------HHHHHHHhcCCCeEEEeC--CCC--------ccccccee--eee-------
Q 013965 291 -----------------------------VEHLARQYLYNPYKVIIG--SPD--------LKANHAIR--QHV------- 322 (433)
Q Consensus 291 -----------------------------~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~--~~~------- 322 (433)
...++..+.......... ... ..+++.+. .++
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 000000000000000000 000 00000000 000
Q ss_pred ------------------------------------------------eccChhHHHHHHHHHHHhhcC-CCeEEEEeCC
Q 013965 323 ------------------------------------------------DIVSESQKYNKLVKLLEDIMD-GSRILIFMDT 353 (433)
Q Consensus 323 ------------------------------------------------~~~~~~~k~~~l~~~l~~~~~-~~~~lVF~~s 353 (433)
...-++.|+..|..+|..... +.+||||.+.
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 001235677888888877654 5799999999
Q ss_pred cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC--CEEEEccccccCCCc--cCeEEEEcCCCcccc
Q 013965 354 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS--PIMTATDVAARGLGN--CACVIIVLCTFVLYL 425 (433)
Q Consensus 354 ~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~--~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~ 425 (433)
....+-|...|...++....+.|.+.-.+|..+++.|...+- -+|++|.+.+.|||+ +++||++|+..+..-
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~d 862 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYD 862 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcc
Confidence 999999999999999999999999999999999999987653 379999999999999 999999999887654
No 124
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.76 E-value=1.2e-16 Score=159.56 Aligned_cols=305 Identities=21% Similarity=0.228 Sum_probs=187.5
Q ss_pred CCcHHHHHHHHhHhc---CC-------cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHH
Q 013965 121 EPTPIQAQGWPMALK---GR-------DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~---g~-------~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~ 190 (433)
.++|+|++++..+.. |. .+++.-.+|+|||+..+..+...+...|... .--.++|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~-~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAK-PLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcc-ccccccEEEccH-HHHHHHHH
Confidence 469999999988764 22 4888889999999984444444443333111 112679999995 89999999
Q ss_pred HHHHhccCCCceEEEEECCccC-hHhHH------HhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 191 ESTKFGASSKIKSTCIYGGVPK-GPQVR------DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~------~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
+|.+|.....+....+++.... ..... .-.-..-|++.+++.+.+.+.. +....+++||+||.|++-..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--
Confidence 9999987656777777776653 11111 1112356888899988766654 33567999999999986543
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeccch-H---------------------------------------------------H
Q 013965 264 EPQIKKILSQIRPDRQTLYWSATWPK-E---------------------------------------------------V 291 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~SAT~~~-~---------------------------------------------------~ 291 (433)
...+.+.+..+.. .+.|++|.|+=. + +
T Consensus 392 ~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 3445556666643 345667888310 0 0
Q ss_pred HHHHHHh------------cCCCeEEEeC--CCC----------------------c-----------------------
Q 013965 292 EHLARQY------------LYNPYKVIIG--SPD----------------------L----------------------- 312 (433)
Q Consensus 292 ~~~~~~~------------~~~~~~~~~~--~~~----------------------~----------------------- 312 (433)
..+...+ +.......+. ... +
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 1111111 1100000000 000 0
Q ss_pred ----ccc-------cceeeeeeccChhHHHHHHHHHHHhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 013965 313 ----KAN-------HAIRQHVDIVSESQKYNKLVKLLEDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (433)
Q Consensus 313 ----~~~-------~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 379 (433)
... ..............|+..|..++..... ..++++..+-+...+.+....+-.|+.+..+||.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 000 0000000001123455666666643321 113333334444444455555556999999999999
Q ss_pred HHHHHHHHHHHhcCCCC---EEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 380 QAERDWVLSEFKAGKSP---IMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 380 ~~~r~~~~~~f~~g~~~---iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
..+|+.+++.|++.... +|.+|.+.+.||++ +..||.||.+++.+.-.++.++
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR 688 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMAR 688 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHH
Confidence 99999999999985544 67888999999999 9999999999999887766553
No 125
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.76 E-value=6.8e-16 Score=153.82 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=63.5
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc----CCCCEEEEccccccCCCc--------
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA----GKSPIMTATDVAARGLGN-------- 410 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~----g~~~iLvaT~~~~~Gldi-------- 410 (433)
.+++++|.+.|....+.+++.|...---...+.|+.+ .+...+++|++ |...||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4568999999999999999999754223345566543 35668888887 478899999999999999
Q ss_pred ----cCeEEEEcCCCcc
Q 013965 411 ----CACVIIVLCTFVL 423 (433)
Q Consensus 411 ----~~~Vi~~d~p~~~ 423 (433)
+.+||+..+|...
T Consensus 547 ~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGL 563 (636)
T ss_pred CCCcccEEEEEeCCCCc
Confidence 7899999999764
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.3e-16 Score=161.34 Aligned_cols=275 Identities=18% Similarity=0.206 Sum_probs=183.0
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|.++|.-+--.+. +.-|+.+.||+|||+++.+|++..... |..|-|++|+..||.+-++.+..+.
T Consensus 79 lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 353 45666765544444 446889999999999999999877665 7789999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCCc------ccccceeEeeccchhhh-cCC------
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHNT------NLRRVTYLVLDEADRML-DMG------ 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~~------~l~~~~~lVvDEah~~~-~~~------ 262 (433)
..+++++.++.++.+.......+ .++|+++|..-+ .++|+.... ..+.+.++||||+|.++ |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 99999999998876654433333 399999998876 344443211 23778999999999854 100
Q ss_pred ----------------cHH------------------------------------HHHHHH------------------H
Q 013965 263 ----------------FEP------------------------------------QIKKIL------------------S 272 (433)
Q Consensus 263 ----------------~~~------------------------------------~~~~i~------------------~ 272 (433)
+-. .+++++ .
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 000 000101 0
Q ss_pred h-------cC---------------------------------------------------C----------------CC
Q 013965 273 Q-------IR---------------------------------------------------P----------------DR 278 (433)
Q Consensus 273 ~-------~~---------------------------------------------------~----------------~~ 278 (433)
. ++ + -.
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence 0 00 0 01
Q ss_pred cEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccH
Q 013965 279 QTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGC 357 (433)
Q Consensus 279 ~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~ 357 (433)
++.+||.|...+..++..-|--+-+.+.... +....-.....+....+|..++++-+... ..+.||||-|.|.+..
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnk---P~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVVIPPNK---PLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEECCCCC---CcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 3446666665544444444433322221111 11111122234567788888888877654 4567999999999999
Q ss_pred HHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-CCEEEEccccccCCCc
Q 013965 358 DQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLGN 410 (433)
Q Consensus 358 ~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~-~~iLvaT~~~~~Gldi 410 (433)
+.++..|.+.+++..++++.....+-+.+- ..|+ ..|-|||++|+||-||
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDI 513 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDI 513 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCE
Confidence 999999999999998888874433333332 3453 4599999999999999
No 127
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=158.98 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=116.2
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC-
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS- 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~- 199 (433)
.|..+|.+.+..+-.+..++++|||.+|||.+--.++ +.+.. ..+...+|+++||++|++|+...+.......
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLR-----esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLR-----ESDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHh-----hcCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 4788999999999999999999999999998633333 33332 2346789999999999999988887754322
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc---CCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES---HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
-.+...+.|....+.++. .-.|+|+|+-|+.+..++.+ .....++++++|+||+|.+....-...++.++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 233344555444333322 22699999999999988877 33457889999999999987766555555555444
Q ss_pred CCcEEEEEeccc
Q 013965 277 DRQTLYWSATWP 288 (433)
Q Consensus 277 ~~~~l~~SAT~~ 288 (433)
.+.++++|||+.
T Consensus 661 ~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 PCPFLVLSATIG 672 (1330)
T ss_pred CCCeeEEecccC
Confidence 578999999974
No 128
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=1.4e-15 Score=161.07 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013965 331 YNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (433)
Q Consensus 331 ~~~l~~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 406 (433)
...+.+.|.... .++++|||++|.+..+.+++.|..... ....+.-+++...|.+++++|++++..||++|..+.+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 445555554322 356899999999999999999975422 1222332333346788999999998899999999999
Q ss_pred CCCc----cCeEEEEcCCCc
Q 013965 407 GLGN----CACVIIVLCTFV 422 (433)
Q Consensus 407 Gldi----~~~Vi~~d~p~~ 422 (433)
|||+ ..+||+..+|..
T Consensus 817 GVD~pg~~l~~viI~kLPF~ 836 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFA 836 (928)
T ss_pred ccccCCCceEEEEEecCCCC
Confidence 9999 689999999973
No 129
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.4e-16 Score=160.09 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred ccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 324 IVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+....+|...+.+.+... ..+.++||||+|++.++.|+..|...++++..+|+ .+.+|+..+..|..+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 456678999999988664 34679999999999999999999999999999997 588999999999999999999999
Q ss_pred ccccCCCc--cC--------eEEEEcCCCccccccc
Q 013965 403 VAARGLGN--CA--------CVIIVLCTFVLYLTLG 428 (433)
Q Consensus 403 ~~~~Gldi--~~--------~Vi~~d~p~~~~~~l~ 428 (433)
+++||+|| .. +||..+.|.+.-.|..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Q 690 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQ 690 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHH
Confidence 99999999 22 4588888887755543
No 130
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=7.8e-17 Score=139.54 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHhHhc-------CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 121 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~-------g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+... .. ++++++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 579999999998884 5889999999999999866544433 21 69999999999999999997
Q ss_pred HhccCCCceEEE-----------EECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC-----------cccccceeEe
Q 013965 194 KFGASSKIKSTC-----------IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-----------TNLRRVTYLV 251 (433)
Q Consensus 194 ~~~~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-----------~~l~~~~~lV 251 (433)
.+.......... ..................+++++|...|........ ......++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111110 011111112222334568899999999987765321 2245678999
Q ss_pred eccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 252 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 252 vDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
+||||++.... .++.++. .+...+|+||||+.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999865432 1555555 56788999999975
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.72 E-value=8.4e-16 Score=142.65 Aligned_cols=291 Identities=16% Similarity=0.198 Sum_probs=191.6
Q ss_pred CCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+.|+|.+.+..+++ |..+++..++|.|||+.++..+-....++ -.|||||. ++-..|++.+.+|.+..
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw---------plliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW---------PLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC---------cEEEEecH-HHhHHHHHHHHHhcccc
Confidence 457999999988774 78899999999999998655444444443 37999996 67788999999988664
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~ 279 (433)
.- +.++.++.+... .+-....|.|.+++.+..+-.. +.-..+.+||+||.|.+-+.. ....+.++..+....+
T Consensus 268 ~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred cc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 32 555555444321 1223467999999887654332 223458999999999876542 2335555555556678
Q ss_pred EEEEEecc----ch---------------HHHHHHHHhcCCCeE-EEe--CC-CCc----------------------cc
Q 013965 280 TLYWSATW----PK---------------EVEHLARQYLYNPYK-VII--GS-PDL----------------------KA 314 (433)
Q Consensus 280 ~l~~SAT~----~~---------------~~~~~~~~~~~~~~~-~~~--~~-~~~----------------------~~ 314 (433)
+|++|.|+ |. +..+++..|+.-... .-. .. .++ ..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999995 11 223344444322100 000 00 000 00
Q ss_pred ccceeeeeecc--------------------------------------ChhHHHHHHHHHHHh-----hcCCCeEEEEe
Q 013965 315 NHAIRQHVDIV--------------------------------------SESQKYNKLVKLLED-----IMDGSRILIFM 351 (433)
Q Consensus 315 ~~~~~~~~~~~--------------------------------------~~~~k~~~l~~~l~~-----~~~~~~~lVF~ 351 (433)
+.. ++.+.+. ....|...+.+.|.. ..+..|.+|||
T Consensus 421 PpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 421 PPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred Ccc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 000 1111110 001122333333333 11344899999
Q ss_pred CCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-CCE-EEEccccccCCCc--cCeEEEEcCCCcccccc
Q 013965 352 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SPI-MTATDVAARGLGN--CACVIIVLCTFVLYLTL 427 (433)
Q Consensus 352 ~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~-~~i-LvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l 427 (433)
.-....+.+...+.+.++....+.|..+..+|....+.|+..+ .+| +++-.+++.|+++ .+.||+..++++...-+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 9999999999999999999999999999999999999999654 443 5556789999999 99999999999987766
Q ss_pred cC
Q 013965 428 GP 429 (433)
Q Consensus 428 ~~ 429 (433)
+.
T Consensus 580 QA 581 (689)
T KOG1000|consen 580 QA 581 (689)
T ss_pred ec
Confidence 53
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=2.2e-16 Score=146.67 Aligned_cols=266 Identities=20% Similarity=0.242 Sum_probs=168.2
Q ss_pred CCCcHHHHHHHHhHhc-C--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 120 FEPTPIQAQGWPMALK-G--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..++|+|..++..+.- | +.-+++.|+|+|||++-+- +...+ ...+||+|.+-..+.||..+++.|.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT-Aa~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT-AACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee-eeeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 5789999999988874 3 6789999999999997433 33333 4469999999999999999999987
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-------------HHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-------------DMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-------------~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
.-..-.+...+.+.. .....++.|+|+|+.++. +++. -+.+.++++||+|.+...-|
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~-----~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR-----GREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh-----cCeeeeEEeehhccchHHHH
Confidence 655555555544322 123457999999996653 2332 35589999999998776545
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHH-hcCCCe--------------EEEeCCCCcccccc-----------
Q 013965 264 EPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ-YLYNPY--------------KVIIGSPDLKANHA----------- 317 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~----------- 317 (433)
+..+..+-. .+ -++++||+-.+...+..- |+-.|. .-.+.-.+.+.+-.
T Consensus 440 RRVlsiv~a----Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~ 514 (776)
T KOG1123|consen 440 RRVLSIVQA----HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLREN 514 (776)
T ss_pred HHHHHHHHH----Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhh
Confidence 544443322 22 488999985443322211 111111 00111111110000
Q ss_pred -eeeeeeccChhHH---HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 013965 318 -IRQHVDIVSESQK---YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (433)
Q Consensus 318 -~~~~~~~~~~~~k---~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 393 (433)
-+.....+-...| .+.|++..+. .+.++|||..+.=.....|-.|. --.++|..++.+|.+|++.|+-+
T Consensus 515 t~kr~lLyvMNP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 515 TRKRMLLYVMNPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTN 587 (776)
T ss_pred hhhhheeeecCcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccC
Confidence 0001111112223 3344444443 46799999876544444433332 35789999999999999999964
Q ss_pred -CCCEEEEccccccCCCc--cCeEEEEc
Q 013965 394 -KSPIMTATDVAARGLGN--CACVIIVL 418 (433)
Q Consensus 394 -~~~iLvaT~~~~~Gldi--~~~Vi~~d 418 (433)
.+..++-+.++...+|+ ++++|.+.
T Consensus 588 ~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 588 PKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CccceEEEeeccCccccCCcccEEEEEc
Confidence 56788888999999999 77777654
No 133
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.70 E-value=6.4e-15 Score=149.19 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013965 328 SQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (433)
Q Consensus 328 ~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 406 (433)
..+...|++.+... ..+.++||||+|++.++.+++.|...|+.+..+||++++.+|.++++.|+.|+..|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44556666666554 35679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--cCeEEEEc-----CCCcccccccC
Q 013965 407 GLGN--CACVIIVL-----CTFVLYLTLGP 429 (433)
Q Consensus 407 Gldi--~~~Vi~~d-----~p~~~~~~l~~ 429 (433)
|+|+ +++||++| .|.+...|+..
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqr 534 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQT 534 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHH
Confidence 9999 99999999 78766655543
No 134
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=160.11 Aligned_cols=333 Identities=16% Similarity=0.178 Sum_probs=224.1
Q ss_pred ccccccChhhccCCHHHHHHHHHhcCceeccCCCCCCCCCCcCCC---CCHHHHHHHHHCCCCCCcHHHHHHHHhHhc-C
Q 013965 61 KNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVG---FPDYVMQEISKAGFFEPTPIQAQGWPMALK-G 136 (433)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-g 136 (433)
..+|..--+..++..++.......+.|..+....|.+...+..++ +.+.....+ |....|+|.++++.+.+ +
T Consensus 1084 P~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~l----f~~~n~iqtqVf~~~y~~n 1159 (1674)
T KOG0951|consen 1084 PQYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETL----FQDFNPIQTQVFTSLYNTN 1159 (1674)
T ss_pred CceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhh----ccccCCceEEEEeeeeccc
Confidence 344444445666666666677777777777777777777776654 333333333 33448999999999876 5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEEEEECCccChHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 215 (433)
+++++.+|+|||||.|+.++++. +....++++++|..+.+..+++.+.+ +....|..++.+.|..+.+..
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH
Confidence 78999999999999998888775 12266899999999999998887765 666778899998888776533
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-----cHHHHHHHHHhcCCCCcEEEEEeccchH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FEPQIKKILSQIRPDRQTLYWSATWPKE 290 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-----~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 290 (433)
+....+|+|+||+++..+ + +.+.+++.|+||+|.+.+.. .--.++.+-.++-+..+++.+|..+.+
T Consensus 1231 ---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lan- 1301 (1674)
T KOG0951|consen 1231 ---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLAN- 1301 (1674)
T ss_pred ---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhcc-
Confidence 345689999999998665 2 57789999999999877432 111277777788888999999988754
Q ss_pred HHHHHHHhcCCCeEEEeCCCCccccccee-eeeeccChhHHHHH-----HHHHHHhhcCCCeEEEEeCCcccHHHHHHHH
Q 013965 291 VEHLARQYLYNPYKVIIGSPDLKANHAIR-QHVDIVSESQKYNK-----LVKLLEDIMDGSRILIFMDTKKGCDQITRQL 364 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~-----l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L 364 (433)
..++ ..+...-.+.+.......+..++ +.+........... ...+.+....+++.+||++++++|..++..|
T Consensus 1302 a~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1302 ARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDL 1379 (1674)
T ss_pred chhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhcc
Confidence 2333 11111111222222112222222 11222222222211 1122233345679999999999999887554
Q ss_pred Hh----------------------CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEEc
Q 013965 365 RM----------------------DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIVL 418 (433)
Q Consensus 365 ~~----------------------~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d 418 (433)
-. ...+..+=|-+++..+...+...|..|.++|+|...- -.|+-. .+.||+.+
T Consensus 1380 ~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmg 1455 (1674)
T KOG0951|consen 1380 VTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMG 1455 (1674)
T ss_pred chhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEec
Confidence 22 1122233388999999999999999999999998866 888888 77777654
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.70 E-value=1.6e-15 Score=153.94 Aligned_cols=300 Identities=19% Similarity=0.211 Sum_probs=189.6
Q ss_pred CCcHHHHHHHHhHh--c--CCcEEEEccCCCchhHHHHHHHHHHHhcC-CCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 121 EPTPIQAQGWPMAL--K--GRDLIGIAETGSGKTLAYLLPAIVHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l--~--g~~~lv~a~TGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+|.||++.+.++. + +-+-|+|..+|.|||+..+-.+......+ ....+-...-.|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 45899999998854 2 45889999999999997433332222222 11111123337999996 7999999999999
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR 275 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~ 275 (433)
.+. +++....|.-......+.-.+..+|+|+.++.+..-+.. +.-.++-|+|+||-|-+-+. ...+.+.+++++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 987 677777776555555555555689999999877532211 01134779999999976543 445666666665
Q ss_pred CCCcEEEEEeccc-------------------------------------------------------------------
Q 013965 276 PDRQTLYWSATWP------------------------------------------------------------------- 288 (433)
Q Consensus 276 ~~~~~l~~SAT~~------------------------------------------------------------------- 288 (433)
.+. .+.+|.|+-
T Consensus 1128 a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444 455788821
Q ss_pred ----------hHH------------HHHHHHhcCC---CeEEEeCCCCccccc---ceeeeee-----------------
Q 013965 289 ----------KEV------------EHLARQYLYN---PYKVIIGSPDLKANH---AIRQHVD----------------- 323 (433)
Q Consensus 289 ----------~~~------------~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~----------------- 323 (433)
+.+ .++.+.+-.. -....+......... ++-|...
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000 0000010000 000000000000000 0000000
Q ss_pred ------------------ccChhHHHHHHHHHHHhhc---------------CCCeEEEEeCCcccHHHHHHHHHhCCC-
Q 013965 324 ------------------IVSESQKYNKLVKLLEDIM---------------DGSRILIFMDTKKGCDQITRQLRMDGW- 369 (433)
Q Consensus 324 ------------------~~~~~~k~~~l~~~l~~~~---------------~~~~~lVF~~s~~~~~~l~~~L~~~~~- 369 (433)
......|+.+|-++|.+-. .++++||||+-+..++.+.+-|.+...
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0122346677777775421 345999999999999999988765433
Q ss_pred ce--EEEcCCCCHHHHHHHHHHHhcC-CCCE-EEEccccccCCCc--cCeEEEEcCCCccccccc
Q 013965 370 PA--LSIHGDKSQAERDWVLSEFKAG-KSPI-MTATDVAARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 370 ~~--~~lh~~~~~~~r~~~~~~f~~g-~~~i-LvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
.+ ..+.|..++.+|.++.++|+++ -++| |++|-+.+-|+|+ +++||+++-.++..--|+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQ 1431 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1431 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHH
Confidence 33 3789999999999999999998 5665 6677999999999 999999998887765444
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.69 E-value=1.5e-15 Score=153.08 Aligned_cols=276 Identities=21% Similarity=0.179 Sum_probs=181.6
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|++.|.-+.-.+ .+..++.+.||.|||+++.+|++..... |..|-||+++..||.+-++.+..+.
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 454 3677776665444 4568899999999999999998655543 6679999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-HHHHcCC------cccccceeEeeccchhhh-cCC------
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESHN------TNLRRVTYLVLDEADRML-DMG------ 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~------~~l~~~~~lVvDEah~~~-~~~------ 262 (433)
..+|+.+.++.++.+...... .-.++|+++|...+- ++|+... ...+.+.+.||||+|.++ |..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 999999999888766544333 345899999997553 3443321 124668999999999743 100
Q ss_pred ---------cHH--------------------------------HHHHHH-----------------Hhc------C---
Q 013965 263 ---------FEP--------------------------------QIKKIL-----------------SQI------R--- 275 (433)
Q Consensus 263 ---------~~~--------------------------------~~~~i~-----------------~~~------~--- 275 (433)
... .+++++ ..+ .
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 000 001100 000 0
Q ss_pred ----------------------------------------------------------CCCcEEEEEeccchHHHHHHHH
Q 013965 276 ----------------------------------------------------------PDRQTLYWSATWPKEVEHLARQ 297 (433)
Q Consensus 276 ----------------------------------------------------------~~~~~l~~SAT~~~~~~~~~~~ 297 (433)
--.++.+||.|...+..++...
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~i 379 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKI 379 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHH
Confidence 0124567777775555555444
Q ss_pred hcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcC
Q 013965 298 YLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG 376 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~ 376 (433)
|--+-+.+.... +..........+....+|..++.+-+.. +..+.||||-|.|.+..+.++..|.+.|++..++++
T Consensus 380 Y~l~vv~IPtnk---p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNA 456 (870)
T CHL00122 380 YNLEVVCIPTHR---PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNA 456 (870)
T ss_pred hCCCEEECCCCC---CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeC
Confidence 433322211111 1111111233455677788777776544 456779999999999999999999999999999999
Q ss_pred CCCHHHH-HHHHHHHhcCC-CCEEEEccccccCCCc
Q 013965 377 DKSQAER-DWVLSEFKAGK-SPIMTATDVAARGLGN 410 (433)
Q Consensus 377 ~~~~~~r-~~~~~~f~~g~-~~iLvaT~~~~~Gldi 410 (433)
.-...++ .+++.. +|+ ..|-|||++|+||.||
T Consensus 457 k~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 457 KPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred CCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 7322222 223332 444 4499999999999999
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=7.3e-15 Score=147.36 Aligned_cols=287 Identities=18% Similarity=0.183 Sum_probs=191.1
Q ss_pred CCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
|+ .|+++|.-+--.+..| -|..+.||-|||+++.+|++...+. |..|-||+..--||..=++++..+..
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHH
Confidence 44 5678887777666656 4799999999999999998766554 55677788888999999999999888
Q ss_pred CCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-HHHHcCC------cccccceeEeeccchhhh-cCC-------
Q 013965 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESHN------TNLRRVTYLVLDEADRML-DMG------- 262 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~------~~l~~~~~lVvDEah~~~-~~~------- 262 (433)
.+|+.+.++..+.+....... -.|||+++|...|- ++|+... ...+.+.+.||||+|.++ |..
T Consensus 145 fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIIS 222 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIIS 222 (925)
T ss_pred HhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccccc
Confidence 899999998876655443333 35999999998763 4554432 124668899999999744 100
Q ss_pred --------cHHHHHHHHHhcC-----------------------------------------------------------
Q 013965 263 --------FEPQIKKILSQIR----------------------------------------------------------- 275 (433)
Q Consensus 263 --------~~~~~~~i~~~~~----------------------------------------------------------- 275 (433)
+...+..++..+.
T Consensus 223 g~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~d 302 (925)
T PRK12903 223 GGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVE 302 (925)
T ss_pred CCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0011111111110
Q ss_pred -----------------------------------------C----------------CCcEEEEEeccchHHHHHHHHh
Q 013965 276 -----------------------------------------P----------------DRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 276 -----------------------------------------~----------------~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
+ -.++.+||.|...+..++..-|
T Consensus 303 YiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY 382 (925)
T PRK12903 303 YIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY 382 (925)
T ss_pred eEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh
Confidence 0 0134566666655545555444
Q ss_pred cCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC
Q 013965 299 LYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 377 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~ 377 (433)
.-+-+.+.... +....-.....+....+|..++++-+... ..+.|+||.|.|.+.++.++..|.+.|++..++++.
T Consensus 383 ~l~Vv~IPTnk---P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 383 NMRVNVVPTNK---PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred CCCEEECCCCC---CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 33322211111 11111112234556778888888877654 467799999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHHhcCC-CCEEEEccccccCCCc-cC---------eEEEEcCCCcc
Q 013965 378 KSQAERDWVLSEFKAGK-SPIMTATDVAARGLGN-CA---------CVIIVLCTFVL 423 (433)
Q Consensus 378 ~~~~~r~~~~~~f~~g~-~~iLvaT~~~~~Gldi-~~---------~Vi~~d~p~~~ 423 (433)
-. +++..+-. .+|. ..|.|||++++||-|| .. +||....|.|.
T Consensus 460 ~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSr 513 (925)
T PRK12903 460 QN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESR 513 (925)
T ss_pred ch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchH
Confidence 33 33333332 4564 4599999999999999 44 88888877654
No 138
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.67 E-value=3.9e-15 Score=139.83 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=110.1
Q ss_pred CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHh-hcCCCeEEEEeCCcc
Q 013965 277 DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLED-IMDGSRILIFMDTKK 355 (433)
Q Consensus 277 ~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~lVF~~s~~ 355 (433)
..|++.+|||+.+.-.+... +.-+..++....+ +...+.+.+.....+.|+.-++. ...+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGL-----lDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGL-----LDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCC-----CCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999998654332221 1222223332221 12223333444456666665544 456779999999999
Q ss_pred cHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCC--------cccc
Q 013965 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTF--------VLYL 425 (433)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~--------~~~~ 425 (433)
.|+.|.++|...|+++..+|++...-+|.+++.+.+.|..+|||.-+.+-+|||+ |..|.++|... |+..
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999764 6666
Q ss_pred cccCCC
Q 013965 426 TLGPLS 431 (433)
Q Consensus 426 ~l~~~~ 431 (433)
.+|+..
T Consensus 538 tIGRAA 543 (663)
T COG0556 538 TIGRAA 543 (663)
T ss_pred HHHHHh
Confidence 666643
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.9e-14 Score=144.95 Aligned_cols=273 Identities=18% Similarity=0.197 Sum_probs=179.6
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|.++|.-+--.+ .+.-|+.+.||-|||+++.+|++...+. |..|-||+++..||..=++++..+...+|
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4566665555444 4457889999999999999998876665 66799999999999999999999999999
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHH-----HHHHHc--CCcccccceeEeeccchhhh-cCC----------
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-----IDMLES--HNTNLRRVTYLVLDEADRML-DMG---------- 262 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~--~~~~l~~~~~lVvDEah~~~-~~~---------- 262 (433)
+.+.++.++.+... +...-.|||+++|...| .+.+.. .....+.+.+.||||+|.++ |..
T Consensus 155 Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~ 232 (939)
T PRK12902 155 LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQV 232 (939)
T ss_pred CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCC
Confidence 99999887665433 33345799999999887 333322 11235678999999999754 110
Q ss_pred -----cHHHHHHHHHhcC--------------------------------------------------------------
Q 013965 263 -----FEPQIKKILSQIR-------------------------------------------------------------- 275 (433)
Q Consensus 263 -----~~~~~~~i~~~~~-------------------------------------------------------------- 275 (433)
.......+...+.
T Consensus 233 ~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~ 312 (939)
T PRK12902 233 ERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIK 312 (939)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhc
Confidence 0000000000000
Q ss_pred ------------------------------------------------------------CCCcEEEEEeccchHHHHHH
Q 013965 276 ------------------------------------------------------------PDRQTLYWSATWPKEVEHLA 295 (433)
Q Consensus 276 ------------------------------------------------------------~~~~~l~~SAT~~~~~~~~~ 295 (433)
--.++.+||.|...+..++.
T Consensus 313 d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~ 392 (939)
T PRK12902 313 DVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFE 392 (939)
T ss_pred CCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHH
Confidence 00144566666554444444
Q ss_pred HHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 013965 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 374 (433)
.-|--+-+.+.... +..........+....+|..++++-+... ..+.|+||-|.|.+..+.++..|.+.|++..++
T Consensus 393 ~iY~l~Vv~IPTnk---P~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 393 KTYKLEVTVIPTNR---PRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHhCCcEEEcCCCC---CeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 44433322221111 11111122234556678888888766554 467799999999999999999999999999999
Q ss_pred cCCCCHHHH-HHHHHHHhcCC-CCEEEEccccccCCCc
Q 013965 375 HGDKSQAER-DWVLSEFKAGK-SPIMTATDVAARGLGN 410 (433)
Q Consensus 375 h~~~~~~~r-~~~~~~f~~g~-~~iLvaT~~~~~Gldi 410 (433)
++.-...++ .+++.. +|+ ..|-|||++++||-||
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCE
Confidence 997322222 223332 454 3499999999999999
No 140
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.64 E-value=6.7e-14 Score=142.84 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccC
Q 013965 329 QKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (433)
Q Consensus 329 ~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 407 (433)
.+...+++.+... ..+.++||||++++.++.+++.|...|+++..+||++++.+|..+++.|+.|+..|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455666666554 346789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc--cCeEEEEcC-----CCccccccc
Q 013965 408 LGN--CACVIIVLC-----TFVLYLTLG 428 (433)
Q Consensus 408 ldi--~~~Vi~~d~-----p~~~~~~l~ 428 (433)
+|+ +++||++|. |.+...|+.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiq 537 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQ 537 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHH
Confidence 999 999999986 555544443
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=4.9e-16 Score=152.77 Aligned_cols=314 Identities=17% Similarity=0.185 Sum_probs=184.3
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC----CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g----~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
..|+.+.. .++..++.-..-.+|+|+|++|+..++++ ..-=+++.+|+|||...+ -+.+.+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 34444322 34555555556678999999999998874 234455679999999743 3334433 357
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH-------------------------hhcCCcEEEeC
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD-------------------------LQKGVEIVIAT 229 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------------------~~~~~~Iiv~T 229 (433)
+|+++|+.+|..|..+++..-. ...++...++.+.....-..+ ...+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 9999999999999998887643 345666665554332211111 11245699999
Q ss_pred hHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC-----CCCcEEEEEeccchH---H----------
Q 013965 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-----PDRQTLYWSATWPKE---V---------- 291 (433)
Q Consensus 230 p~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~---~---------- 291 (433)
++.+...-......+..+++||+|||||.........=...+..+. ...+.+.|+||+.-- .
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999877666666788899999999998432111100000011110 123456788885211 1
Q ss_pred --------------------HHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH------HHhh-c--
Q 013965 292 --------------------EHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL------LEDI-M-- 342 (433)
Q Consensus 292 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~------l~~~-~-- 342 (433)
+...+.++.++..+...-++......+..........-..+..-++ |... .
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 1122233334333332222211111111111111111111111111 1110 0
Q ss_pred -----------CCCeEEEEeCCcccHHHHHHHHHh-------------CCCceE--EEcCCCCHHHHHHHHH---HHhcC
Q 013965 343 -----------DGSRILIFMDTKKGCDQITRQLRM-------------DGWPAL--SIHGDKSQAERDWVLS---EFKAG 393 (433)
Q Consensus 343 -----------~~~~~lVF~~s~~~~~~l~~~L~~-------------~~~~~~--~lh~~~~~~~r~~~~~---~f~~g 393 (433)
+..+.|-||.++++...+++.+.. .++.+. -+.|.|...+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 112789999999998888766532 234444 4668899988855543 34567
Q ss_pred CCCEEEEccccccCCCc--cCeEEEEcCCCccc
Q 013965 394 KSPIMTATDVAARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 394 ~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
+++||--...+++|+|+ .+.||.||.-+++.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smV 560 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMV 560 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHH
Confidence 88999999999999999 99999999877654
No 142
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.63 E-value=1.3e-15 Score=152.07 Aligned_cols=290 Identities=23% Similarity=0.334 Sum_probs=183.4
Q ss_pred CCcHHHHHHHHhHhc----CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
++.+||...+.++.+ +-+-++..+||.|||.+ .+.++.++.+.. ...|| -||++|+-.|.+ |..++.+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCC-eEEeccccccCC-chhhccccc
Confidence 688999999988764 45789999999999987 666666666542 22256 488999988876 677788887
Q ss_pred cCCCceEEEEECCccChH--hHHHhhcCCcEEEeChHHHHHHHHcCCcccc--cceeEeeccchhhhcCC----------
Q 013965 197 ASSKIKSTCIYGGVPKGP--QVRDLQKGVEIVIATPGRLIDMLESHNTNLR--RVTYLVLDEADRMLDMG---------- 262 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~--~~~~lVvDEah~~~~~~---------- 262 (433)
+. +......|.-.... +........+|+++|++.++. +...|. ++.++||||.|+|....
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 54 44444333221111 112223578999999988764 122222 36799999999965321
Q ss_pred cH----------------HHHHHHHHhcCCC---------------CcEEE--EEec-----------------------
Q 013965 263 FE----------------PQIKKILSQIRPD---------------RQTLY--WSAT----------------------- 286 (433)
Q Consensus 263 ~~----------------~~~~~i~~~~~~~---------------~~~l~--~SAT----------------------- 286 (433)
+. +.+..++..+-|+ .+..+ ..+|
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 11 1222222221110 01111 1111
Q ss_pred -------cchHHHHHH------------------------------------------HHhcCCCeEEEeCCCCcccccc
Q 013965 287 -------WPKEVEHLA------------------------------------------RQYLYNPYKVIIGSPDLKANHA 317 (433)
Q Consensus 287 -------~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 317 (433)
+|..++... +..+.+|+.+.- +...
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~------ve~~ 695 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN------VENS 695 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh------hccc
Confidence 111111111 111112211100 0000
Q ss_pred eeee---eeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 013965 318 IRQH---VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (433)
Q Consensus 318 ~~~~---~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 393 (433)
.... ...+....|.+.|-.++-++. .++++|.||+...-.+-+..+|.-.++....+.|....++|...++.|+..
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 0000 012233456666666665543 478999999999999999999998999999999999999999999999986
Q ss_pred CCC---EEEEccccccCCCc--cCeEEEEcCCCccccccc
Q 013965 394 KSP---IMTATDVAARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 394 ~~~---iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
... +|.+|...+.|+|+ ++.||+||-.++...++.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~q 815 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 815 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHH
Confidence 644 89999999999999 999999999998877654
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=5.2e-14 Score=132.75 Aligned_cols=238 Identities=17% Similarity=0.132 Sum_probs=159.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
.+-++-++||.||||-- +|+++.. ....++.-|.|.||.++++.+.+.+ +.+..++|.......
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecC
Confidence 34577789999999975 4556554 4457999999999999999998876 666666664332111
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHH-hcCCCCcEEEEEeccchHHHHH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIRPDRQTLYWSATWPKEVEHL 294 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~-~~~~~~~~l~~SAT~~~~~~~~ 294 (433)
-. ...+..+-||-++ +.- -..+++.|+||+++|.|...+-.+.+.+. ......++.+= +.+..+
T Consensus 255 ~~--~~~a~hvScTVEM----~sv----~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldl 319 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEM----VSV----NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDL 319 (700)
T ss_pred CC--CCcccceEEEEEE----eec----CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHH
Confidence 00 1235666666432 111 24589999999999988876666655432 22233333321 234444
Q ss_pred HHHhcCC---CeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCc-
Q 013965 295 ARQYLYN---PYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP- 370 (433)
Q Consensus 295 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~- 370 (433)
++..+.. ...+ ..++-.....-.+.++.-+..+.++.-++ |-|++++..+...+.+.+..
T Consensus 320 V~~i~k~TGd~vev--------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV--~FSkk~I~~~k~kIE~~g~~k 383 (700)
T KOG0953|consen 320 VRKILKMTGDDVEV--------------REYERLSPLVVEETALGSLSNLKPGDCVV--AFSKKDIFTVKKKIEKAGNHK 383 (700)
T ss_pred HHHHHhhcCCeeEE--------------EeecccCcceehhhhhhhhccCCCCCeEE--EeehhhHHHHHHHHHHhcCcc
Confidence 5444321 1111 11111111111224555566666666444 44788999999999887655
Q ss_pred eEEEcCCCCHHHHHHHHHHHhc--CCCCEEEEccccccCCCc-cCeEEEEcCC
Q 013965 371 ALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLGN-CACVIIVLCT 420 (433)
Q Consensus 371 ~~~lh~~~~~~~r~~~~~~f~~--g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p 420 (433)
+++++|+++++.|..--..|++ ++.+||||||+.++|+|+ ++.||.+++-
T Consensus 384 ~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~ 436 (700)
T KOG0953|consen 384 CAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLI 436 (700)
T ss_pred eEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecc
Confidence 9999999999999999999998 899999999999999999 9999998875
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.56 E-value=4.1e-12 Score=130.79 Aligned_cols=89 Identities=20% Similarity=0.374 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhc----CCCCEEEEccc
Q 013965 330 KYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKA----GKSPIMTATDV 403 (433)
Q Consensus 330 k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~----g~~~iLvaT~~ 403 (433)
....+.+.+.... ..+.+|||++|.+..+.++..|... +.. ...+|.. .+..+++.|++ ++..||++|..
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~s 594 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecc
Confidence 3444444443321 3446899999999999999998743 333 4446642 46778877764 67789999999
Q ss_pred cccCCCc----cCeEEEEcCCCc
Q 013965 404 AARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 404 ~~~Gldi----~~~Vi~~d~p~~ 422 (433)
+.+|||+ +.+||+..+|..
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCC
Confidence 9999999 899999999964
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=4.6e-12 Score=131.43 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCCCCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 118 GFFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|+|.+..+.+ ..+++++++.|.+-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 35667999999887655 5789999999999999999999998876432 24689999999999999999998
Q ss_pred Hh
Q 013965 194 KF 195 (433)
Q Consensus 194 ~~ 195 (433)
+.
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 84
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=3e-12 Score=132.55 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=62.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCCHHHHHHHHHHHhcCCC-CEEEEccccccCCCc----cCeEEEE
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKSQAERDWVLSEFKAGKS-PIMTATDVAARGLGN----CACVIIV 417 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~~~~r~~~~~~f~~g~~-~iLvaT~~~~~Gldi----~~~Vi~~ 417 (433)
.+++|||++|.+..+.+++.+...... ....+|..+ +...++.|.++.- .++|+|..+++|||+ ...||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 347999999999999999999876542 345555544 4478888887665 899999999999999 7899999
Q ss_pred cCCCc
Q 013965 418 LCTFV 422 (433)
Q Consensus 418 d~p~~ 422 (433)
.+|.-
T Consensus 556 ~lPfp 560 (654)
T COG1199 556 GLPFP 560 (654)
T ss_pred ecCCC
Confidence 99975
No 147
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=3.3e-13 Score=127.55 Aligned_cols=302 Identities=12% Similarity=0.017 Sum_probs=199.0
Q ss_pred HHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 115 SKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 115 ~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
.++.-+....+|.+++..+.+|+++.+.-.|.+||.++|.+.....+...+ ....+++.|+.+++....+.+.-
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEE
Confidence 334445668899999999999999999999999999999988877665432 45579999999998765443321
Q ss_pred hccC---CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC----cccccceeEeeccchhhhcC-C--cH
Q 013965 195 FGAS---SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDM-G--FE 264 (433)
Q Consensus 195 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~~~~lVvDEah~~~~~-~--~~ 264 (433)
.... ..--++-.+.+.....+....+.+.+++++.|.......-... ..+-...++++||+|..+-. + ..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 1111 0111223344444444555566789999999988765433222 22334568899999954322 1 22
Q ss_pred HHHHHHHHhc-----CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeecc---------ChhHH
Q 013965 265 PQIKKILSQI-----RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIV---------SESQK 330 (433)
Q Consensus 265 ~~~~~i~~~~-----~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~k 330 (433)
.+++.+...+ ..+.|++-.|||+...++-...-+.-+.......... . ......+... ..+.+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-P--s~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-P--SSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-C--CccceEEEeCCCCCCcchhhhhhH
Confidence 3444444332 3578999999999776665544443333333221111 1 1111222111 12334
Q ss_pred HHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhC----C----CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc
Q 013965 331 YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD----G----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (433)
Q Consensus 331 ~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~----~----~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT 401 (433)
......++.+ ...+-++|-||.+++-|+.+....+.. + -.+..+.|+...++|.++..+.=.|+..-+|||
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 4444444433 334569999999999999886655431 1 134568899999999999999999999999999
Q ss_pred cccccCCCc--cCeEEEEcCCCcccc
Q 013965 402 DVAARGLGN--CACVIIVLCTFVLYL 425 (433)
Q Consensus 402 ~~~~~Gldi--~~~Vi~~d~p~~~~~ 425 (433)
++++-|||| .+.|++.++|-|+.-
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aN 616 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIAN 616 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHH
Confidence 999999999 999999999998753
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.50 E-value=2.3e-12 Score=130.37 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC--CEEEEccc
Q 013965 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS--PIMTATDV 403 (433)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~--~iLvaT~~ 403 (433)
+..|++.|.-+|+++. .++++|||++-.+..+.|..+|.-.|+....+.|....++|...+++|+.... .++++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 4557777777777654 46799999999999999999999999999999999999999999999998653 47899999
Q ss_pred cccCCCc--cCeEEEEcCCCccc
Q 013965 404 AARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 404 ~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
.+.|||+ ++.||+||-.++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPt 1360 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPT 1360 (1958)
T ss_pred CccccccccCceEEEecCCCCch
Confidence 9999999 99999999877654
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=7.7e-12 Score=128.36 Aligned_cols=288 Identities=20% Similarity=0.196 Sum_probs=160.6
Q ss_pred cHHHHHHHHhHhc----C--C--cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 123 TPIQAQGWPMALK----G--R--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 123 ~~~Q~~~i~~~l~----g--~--~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..+|-+|+..+.. . + =+|-.|.||||||++ =.-++..+.. ...|++..|..-.|.|..|.-..+++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd-----~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRD-----DKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCC-----CCCCceEEEEccccceeccchHHHHH
Confidence 5689999988764 1 1 266669999999996 3333333332 23477888888888888888777776
Q ss_pred hccCCCceEEEEECCccChHh-------------------------------------------HHHhh--------cCC
Q 013965 195 FGASSKIKSTCIYGGVPKGPQ-------------------------------------------VRDLQ--------KGV 223 (433)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~-------------------------------------------~~~~~--------~~~ 223 (433)
-..-..-..+++.|+....+- ...+. -..
T Consensus 484 rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~a 563 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAA 563 (1110)
T ss_pred hcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcC
Confidence 443333333444443111000 00000 025
Q ss_pred cEEEeChHHHHHHHHcC---Ccccc--c--ceeEeeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHH-
Q 013965 224 EIVIATPGRLIDMLESH---NTNLR--R--VTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHL- 294 (433)
Q Consensus 224 ~Iiv~Tp~~l~~~l~~~---~~~l~--~--~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~- 294 (433)
.++|||+++++...... ...+. . -+.|||||+|..-.. ....+..++... .-...+++||||+|+.+.+.
T Consensus 564 pv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 564 PVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred CeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 79999999998766321 11111 1 368999999964222 223344444322 24678999999999887543
Q ss_pred HHHh----------cCC---CeEEE---eCCCCccc-----c---------------------ccee-eeeeccC-----
Q 013965 295 ARQY----------LYN---PYKVI---IGSPDLKA-----N---------------------HAIR-QHVDIVS----- 326 (433)
Q Consensus 295 ~~~~----------~~~---~~~~~---~~~~~~~~-----~---------------------~~~~-~~~~~~~----- 326 (433)
.+.| .+. +..+. +....... . ...+ -.+..+.
T Consensus 643 ~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~ 722 (1110)
T TIGR02562 643 FRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRE 722 (1110)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccc
Confidence 2222 121 11111 11100000 0 0000 0000011
Q ss_pred hhHHHHHHHHHH--------Hhhc-----CCCe---EEEEeCCcccHHHHHHHHHhC------CCceEEEcCCCCHHHHH
Q 013965 327 ESQKYNKLVKLL--------EDIM-----DGSR---ILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERD 384 (433)
Q Consensus 327 ~~~k~~~l~~~l--------~~~~-----~~~~---~lVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~r~ 384 (433)
.......+.+.+ +.+. .+++ .+|-+++++.+-.++..|... .+.+.++|+..+...|.
T Consensus 723 ~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs 802 (1110)
T TIGR02562 723 NESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRS 802 (1110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHH
Confidence 111222222222 1111 1122 477778888888888887653 24577899999887777
Q ss_pred HHHHHH----------------------hc----CCCCEEEEccccccCCCc-cCeEEEE
Q 013965 385 WVLSEF----------------------KA----GKSPIMTATDVAARGLGN-CACVIIV 417 (433)
Q Consensus 385 ~~~~~f----------------------~~----g~~~iLvaT~~~~~Gldi-~~~Vi~~ 417 (433)
.+++.. .+ +...|+|+|++.+.|+|+ .+.+|.-
T Consensus 803 ~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~ 862 (1110)
T TIGR02562 803 YIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD 862 (1110)
T ss_pred HHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec
Confidence 766442 11 356799999999999999 8877653
No 150
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.45 E-value=2e-12 Score=105.21 Aligned_cols=105 Identities=33% Similarity=0.498 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013965 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 406 (433)
..|...+.+++.... .++++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|+++..+||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 368888888887654 4679999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 407 GLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 407 Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
|+|+ +++||+++.|.+...++....+
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR 118 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGR 118 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccc
Confidence 9999 9999999999998877765543
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.43 E-value=1.3e-11 Score=123.54 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=166.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
..-.++-+|+|+|||.+ ++..+.....++ +.++|+|+.+++|+.+....++..+-. +.. .|.+.... .
T Consensus 49 ~~V~vVRSpMGTGKTta-Li~wLk~~l~~~------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-~ 116 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTA-LIRWLKDALKNP------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-I 116 (824)
T ss_pred CCeEEEECCCCCCcHHH-HHHHHHHhccCC------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-c
Confidence 34578889999999987 455555543222 678999999999999999999875321 111 11111110 0
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHH-------HHHHhcCCCCcEEEEEeccc
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK-------KILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~-------~i~~~~~~~~~~l~~SAT~~ 288 (433)
.. ....+-+++..+.|.++. ...+.++++|||||+-..+..-|.+.++ .+...++....+|++-|++.
T Consensus 117 i~--~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 117 ID--GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred cc--ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 00 113466777777775553 2246779999999998655443333222 23344577889999999999
Q ss_pred hHHHHHHHHhcCC-CeEEEeCCCCcccccceeeeee----------------------------------ccChhHHHHH
Q 013965 289 KEVEHLARQYLYN-PYKVIIGSPDLKANHAIRQHVD----------------------------------IVSESQKYNK 333 (433)
Q Consensus 289 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~k~~~ 333 (433)
...-++...+..+ .+.+++......-...-+..+. .....+....
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9999998887654 3334332211100000000000 0000112233
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc---
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--- 410 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--- 410 (433)
.-.++..+..++++-||+.|..-++.++++.......+..++|..+..+. +. -++.+|++-|.++..|+++
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchh
Confidence 44455566678899999999999999999998888899999987766532 22 4678899999999999999
Q ss_pred -cCeEEEE
Q 013965 411 -CACVIIV 417 (433)
Q Consensus 411 -~~~Vi~~ 417 (433)
.+.|+.|
T Consensus 346 HF~~~f~y 353 (824)
T PF02399_consen 346 HFDSMFAY 353 (824)
T ss_pred hceEEEEE
Confidence 6666666
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.43 E-value=1.9e-11 Score=114.07 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhhcC---CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCC-CC-EEEEcc
Q 013965 328 SQKYNKLVKLLEDIMD---GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGK-SP-IMTATD 402 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~~---~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~-~~-iLvaT~ 402 (433)
+.|+++|.+-|..+.. .-+.|||.+...-.+.+.-.|.+.|+.|+-+-|+|++..|+..++.|++.- +. +|++-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 4466667665544332 238999999999999999999999999999999999999999999999754 34 466667
Q ss_pred ccccCCCc--cCeEEEEcCCCccc
Q 013965 403 VAARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
+.+.-+|+ +.+|+++|+=++..
T Consensus 699 AGGVALNLteASqVFmmDPWWNpa 722 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPA 722 (791)
T ss_pred cCceEeeechhceeEeecccccHH
Confidence 77777888 99999999866543
No 153
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.42 E-value=7.6e-11 Score=112.29 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=172.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCC-Cce----EEEEEC--------------CccChHhHHHhh------------
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASS-KIK----STCIYG--------------GVPKGPQVRDLQ------------ 220 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~----~~~~~g--------------~~~~~~~~~~~~------------ 220 (433)
.|+||||+|+|..|.++.+.+.++.... .+. ...-+| ...+......+.
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 6899999999999999998888765441 100 000011 001111111121
Q ss_pred -------------cCCcEEEeChHHHHHHHHc------CCcccccceeEeeccchhhhcCCcHHHHHHHHHhc---C---
Q 013965 221 -------------KGVEIVIATPGRLIDMLES------HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---R--- 275 (433)
Q Consensus 221 -------------~~~~Iiv~Tp~~l~~~l~~------~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~---~--- 275 (433)
..+|||||+|=-|...+.. +...|+.+.++|+|.||.|+..+|. .+..++..+ +
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCCC
Confidence 1479999999888877764 2335899999999999977654433 334444333 2
Q ss_pred ------------------CCCcEEEEEeccchHHHHHHHHhcCCCeEE---EeCCCC----cccccceeeeeecc-----
Q 013965 276 ------------------PDRQTLYWSATWPKEVEHLARQYLYNPYKV---IIGSPD----LKANHAIRQHVDIV----- 325 (433)
Q Consensus 276 ------------------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~----- 325 (433)
.-+|+|++|+...+++..+....+.+..-. ...... ......+.|.+.-.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 136999999999999999999877653221 111110 12233444544322
Q ss_pred --ChhHHHHHHHH-HHHhhc---CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 326 --SESQKYNKLVK-LLEDIM---DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 326 --~~~~k~~~l~~-~l~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
....+.+.+.+ ++..+. ..+.+|||++|.=+--.|...|++.++....+|-..++.+..++-..|..|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 12334444443 333332 345899999999999999999999999999999999999999999999999999999
Q ss_pred Ecccc--ccCCCc--cCeEEEEcCCCccccc
Q 013965 400 ATDVA--ARGLGN--CACVIIVLCTFVLYLT 426 (433)
Q Consensus 400 aT~~~--~~Gldi--~~~Vi~~d~p~~~~~~ 426 (433)
.|.-+ =+=..| +.+||.|.+|....-|
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY 386 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFY 386 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHH
Confidence 99533 223445 9999999999987665
No 154
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=4.5e-12 Score=122.75 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc--CCCC-EEEEc
Q 013965 327 ESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA--GKSP-IMTAT 401 (433)
Q Consensus 327 ~~~k~~~l~~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~--g~~~-iLvaT 401 (433)
..-|+..+++.++... ...+++|..+=.....-+...|.+.|+....+||.....+|..+++.|+. |..+ .|++-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 3456666777776652 34466666655555566777899999999999999999999999999985 3334 45555
Q ss_pred cccccCCCc--cCeEEEEcCCCccccc
Q 013965 402 DVAARGLGN--CACVIIVLCTFVLYLT 426 (433)
Q Consensus 402 ~~~~~Gldi--~~~Vi~~d~p~~~~~~ 426 (433)
...+.|||+ .+|+|.+|+-++..+.
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLE 833 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALE 833 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHH
Confidence 788889999 9999999999987653
No 155
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.42 E-value=2.4e-12 Score=102.37 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=82.3
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
+|+-.++...+|+|||.-.+.-++...... +.++|||.|||.++..+.+.++.. .+++..-.- .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~--~--- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNAR--M--- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTS--S---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccCceee--e---
Confidence 456678899999999997454455544443 778999999999999988888653 233221100 0
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEEeccchHH
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEV 291 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 291 (433)
.....+.-|-++|...+.+++.+ ...+.++++||+||||..-... +.-.+... .. .....+|++|||+|-..
T Consensus 67 --~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 --RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT--
T ss_pred --ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCC
Confidence 12234567899999999888776 5668899999999999632211 12222222 11 23467999999998654
No 156
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.41 E-value=2.5e-12 Score=120.38 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=93.0
Q ss_pred HHHHHHHhHh-------------cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH
Q 013965 125 IQAQGWPMAL-------------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (433)
Q Consensus 125 ~Q~~~i~~~l-------------~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~ 191 (433)
+|.+++.+++ ..+.++++.++|+|||...+ .++..+..... ......+|||+|. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i-~~~~~l~~~~~--~~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAI-ALISYLKNEFP--QRGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHH-HHHHHHHHCCT--TSS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhh-hhhhhhhhccc--cccccceeEeecc-chhhhhhhh
Confidence 5777777653 23679999999999999844 44444433211 1112259999999 888999999
Q ss_pred HHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHH--------HHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI--------DMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~--------~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
+.++.....+++..+.+...............+++|+|++.+. ..+.. .++++||+||+|.+-+.
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~-- 149 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK-- 149 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT--
T ss_pred hccccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc--
Confidence 9999866556766666554122222233456899999999988 22222 34899999999998433
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecc
Q 013965 264 EPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
.....+.+..+. ....+++|||+
T Consensus 150 ~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 150 DSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp TSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccccccc-cceEEeecccc
Confidence 333444444454 67788899996
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.38 E-value=1.6e-11 Score=119.03 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCC-EEEEccc
Q 013965 326 SESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP-IMTATDV 403 (433)
Q Consensus 326 ~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~-iLvaT~~ 403 (433)
.++.|+..|-++|..+. .++++|+|++-.+..+.+.++|...++....+.|.....+|..++.+|+..++- +|++|.+
T Consensus 1025 tdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1025 TDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred ccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 45667777777776654 467999999999999999999999999999999999999999999999986654 6899999
Q ss_pred cccCCCc--cCeEEEEcCCCccccccc
Q 013965 404 AARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 404 ~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
.+-|||+ ++.||+||-.++..+-+.
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~Q 1131 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQ 1131 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhH
Confidence 9999999 999999999887765543
No 158
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.29 E-value=5.1e-11 Score=109.84 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHh----HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 121 ~~~~~Q~~~i~~----~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
+|+|.|.+.+.. +..+.++++.||||+|||++|++|++.++..... ...+.+++++++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~--~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE--RIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc--cccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995544 5568999999999999999999999987765321 002348999999999999988777765
No 159
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.29 E-value=5.1e-11 Score=109.84 Aligned_cols=73 Identities=26% Similarity=0.202 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHh----HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 121 ~~~~~Q~~~i~~----~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
+|+|.|.+.+.. +..+.++++.||||+|||++|++|++.++..... ...+.+++++++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~--~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE--RIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc--cccccceeEEeccHHHHHHHHHHHHhc
Confidence 469999995544 5568999999999999999999999987765321 002348999999999999988777765
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.29 E-value=1.3e-10 Score=116.03 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHh----------------------CCCceEEEcCCCCHHHHHH
Q 013965 329 QKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRM----------------------DGWPALSIHGDKSQAERDW 385 (433)
Q Consensus 329 ~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~----------------------~~~~~~~lh~~~~~~~r~~ 385 (433)
.|+-.|+++|+... -+.++|||.++....+.+..+|.. .|.....|.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 34556667765432 367999999999999999998864 1345677899999999999
Q ss_pred HHHHHhcCC----CCEEEEccccccCCCc--cCeEEEEcCCCcccccc
Q 013965 386 VLSEFKAGK----SPIMTATDVAARGLGN--CACVIIVLCTFVLYLTL 427 (433)
Q Consensus 386 ~~~~f~~g~----~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l 427 (433)
..+.|++-. .-.||+|.+.+-|||+ ++.||+||..++.+.-+
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt 1253 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDT 1253 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccch
Confidence 999998742 2289999999999999 99999999988876443
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.29 E-value=2.9e-10 Score=115.30 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=94.5
Q ss_pred EccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh--
Q 013965 142 IAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-- 219 (433)
Q Consensus 142 ~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 219 (433)
.+.+|||||.+|+-.+-..+.. |..+||++|...|+.|+.+.+++.+.. ..+..++++....+..+.+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHH
Confidence 3446999999987766655554 778999999999999999999986531 4577788776665544333
Q ss_pred --hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC---cHHHHHHH--HHhcCCCCcEEEEEeccchHHH
Q 013965 220 --QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG---FEPQIKKI--LSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 220 --~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~---~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
.....|+|+|-. .-...+.++.+|||||-|.-.-.. ...+.+.+ +.....+..+|+-|||++-+..
T Consensus 236 ~~~G~~~IViGtRS-------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRS-------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcce-------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 335789999931 123357899999999999433221 22222322 2333468899999999876655
Q ss_pred HHHH
Q 013965 293 HLAR 296 (433)
Q Consensus 293 ~~~~ 296 (433)
..+.
T Consensus 309 ~~~~ 312 (665)
T PRK14873 309 ALVE 312 (665)
T ss_pred HHHh
Confidence 4443
No 162
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.26 E-value=9.2e-12 Score=91.33 Aligned_cols=69 Identities=28% Similarity=0.378 Sum_probs=64.3
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 362 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
++|+..++.+..+||++++.+|..+++.|++++..|||||+++++|+|+ +++||++++|.+...|....
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~ 71 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRI 71 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHh
Confidence 3688899999999999999999999999999999999999999999999 99999999999988876543
No 163
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.5e-10 Score=118.63 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=90.0
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
++|+=.|.+-.+.-.+.-+..+.||-|||+++.+|++...+. |.-|-||+..--||..=++++..+...+|+
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fLGL 239 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHhCC
Confidence 344444455444444557889999999999999998777665 444666677778998888888888888899
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC------CcccccceeEeeccchhhh
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lVvDEah~~~ 259 (433)
.+.++....... ..+.-.-.|||+++|..-| .++|+.+ ....+.+.+.||||+|.++
T Consensus 240 svg~i~~~~~~~-~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 240 SVDCIDKHQPNS-EARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ceeecCCCCCCH-HHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 999886533222 2333345799999998765 2344332 1124568899999999754
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.21 E-value=1.4e-10 Score=115.35 Aligned_cols=277 Identities=17% Similarity=0.189 Sum_probs=167.8
Q ss_pred HhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh-ccCCCceEEEEECC
Q 013965 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF-GASSKIKSTCIYGG 209 (433)
Q Consensus 131 ~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~-~~~~~~~~~~~~g~ 209 (433)
..+..++.+++-+.||+|||..+.--+|+.+..+. .+....+.+..|+|..+..+++.+..- +...+-.+ |
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~er~e~~g~tv----g- 459 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVANERGEEVGETC----G- 459 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHHhhHHhhcccc----c-
Confidence 34445677888999999999999999999888763 233455888899998888887766542 11111110 0
Q ss_pred ccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh-hcCCcHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~-~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
++.......-+.-.-|.+||-+-+++++.+. +..+.++|+||.|.. .+.+|...+..-+..+.++..++++|||+.
T Consensus 460 y~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 460 YNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred ccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 0000000011123469999999999998875 566899999999953 333355444444444455666666666653
Q ss_pred hH--------------------HHHHHHHhcCCCeEEEeCCCC----------cccccc-eeeee---------------
Q 013965 289 KE--------------------VEHLARQYLYNPYKVIIGSPD----------LKANHA-IRQHV--------------- 322 (433)
Q Consensus 289 ~~--------------------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~--------------- 322 (433)
.+ +..+....+..+......... .....+ -....
T Consensus 537 Td~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~a 616 (1282)
T KOG0921|consen 537 TDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTA 616 (1282)
T ss_pred hhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhh
Confidence 32 222222222221111100000 000000 00000
Q ss_pred -eccCh----hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-------CCceEEEcCCCCHHHHHHHHHHH
Q 013965 323 -DIVSE----SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------GWPALSIHGDKSQAERDWVLSEF 390 (433)
Q Consensus 323 -~~~~~----~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~lh~~~~~~~r~~~~~~f 390 (433)
....+ ..-.+.++..+....-.+.++||.+.+.....|...|... .+.+...|+.....++.++++..
T Consensus 617 m~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~ 696 (1282)
T KOG0921|consen 617 MSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV 696 (1282)
T ss_pred hhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc
Confidence 00011 1122333333333223457999999999999999887542 47788999999999999999999
Q ss_pred hcCCCCEEEEccccccCCCccCeEEEEc
Q 013965 391 KAGKSPIMTATDVAARGLGNCACVIIVL 418 (433)
Q Consensus 391 ~~g~~~iLvaT~~~~~Gldi~~~Vi~~d 418 (433)
..|..+++++|.+++..+.+.+.|.+.|
T Consensus 697 p~gv~kii~stniaetsiTidd~v~vid 724 (1282)
T KOG0921|consen 697 PEGVTKIILSTNIAETSITIDDVVYVID 724 (1282)
T ss_pred cccccccccccceeeEeeeecceeEEEe
Confidence 9999999999999999999944444333
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.20 E-value=1.4e-09 Score=116.90 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=86.8
Q ss_pred HHHHHHHHHH-Hh-hcCCC--eEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC--CCCEEEEcc
Q 013965 329 QKYNKLVKLL-ED-IMDGS--RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG--KSPIMTATD 402 (433)
Q Consensus 329 ~k~~~l~~~l-~~-~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g--~~~iLvaT~ 402 (433)
.|...+.+++ .. ...+. ++|||++.....+.+...|...++....++|.++..+|...+++|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5777777777 33 33455 899999999999999999999988899999999999999999999996 445788889
Q ss_pred ccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 403 VAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+++.|+|+ +++||++|..++.....+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHH
Confidence 99999999 9999999999887766543
No 166
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.18 E-value=4.5e-12 Score=127.86 Aligned_cols=260 Identities=20% Similarity=0.217 Sum_probs=164.1
Q ss_pred CCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 121 EPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
...|+|.+.+..... ..+.++-+|||+|||++|.++++..+...+ +.++++++|..+|+..-...+.+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 446677777766554 568999999999999999999988877654 6789999999999998888887755555
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc--ccccceeEeeccchhhhcCCcHHHHHHHHH-----
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVLDEADRMLDMGFEPQIKKILS----- 272 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lVvDEah~~~~~~~~~~~~~i~~----- 272 (433)
++++.-+.|+...+.. -...++++|+||+++..+.+++.. .+++++.+|+||.|++.+. .++.++.+..
T Consensus 1001 g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 8999999888766522 124589999999999988876543 4788999999999976543 4444333322
Q ss_pred --hcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee-------ccChhHHHHHHHHHHHhhcC
Q 013965 273 --QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-------IVSESQKYNKLVKLLEDIMD 343 (433)
Q Consensus 273 --~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~k~~~l~~~l~~~~~ 343 (433)
...+..+.+++|--+ ....+++.+.-..+. ..+. ....+..+...+. +.....+.....+.++...+
T Consensus 1077 s~~t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~--~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFR--PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCC--cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 223345555555332 334555554433222 1111 1111122222221 12223445556677788888
Q ss_pred CCeEEEEeCCcccHHHHHHHH----HhCCCceEEEcCCCCHHHHHHHHHHHhcCCCC
Q 013965 344 GSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~ 396 (433)
..+++||+.+++...--+..| ....-+...++.+ ..+-+.++..-++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 899999999887654443333 2222233444444 45555555555554433
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=5.9e-09 Score=110.55 Aligned_cols=282 Identities=12% Similarity=0.125 Sum_probs=155.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
+..+|.=-||||||++ .+-+...+... ...|.+++|+-++.|-.|..+++..+........ ...+...-.
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999997 33333333332 3488999999999999999999999875432211 222333333
Q ss_pred HHhhcC-CcEEEeChHHHHHHHHcCC--cccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHH
Q 013965 217 RDLQKG-VEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (433)
Q Consensus 217 ~~~~~~-~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 293 (433)
+.+..+ ..|+|||.++|-....... ..-.+=-+||+|||||--.......+ ...-++...++||.|+-..-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~----~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL----KKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH----HHHhccceEEEeeCCccccccc
Confidence 444433 4899999999988876641 11223347899999984322122222 2333458899999997332222
Q ss_pred H-HHHhcCCCeEEEeCCCCcccccceeeeeec------------------------cCh-------------------hH
Q 013965 294 L-ARQYLYNPYKVIIGSPDLKANHAIRQHVDI------------------------VSE-------------------SQ 329 (433)
Q Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~-------------------~~ 329 (433)
. ....++.++..+...+.......+...+.. ..+ ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 2 133333333333222211111111000000 000 00
Q ss_pred H----HHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhCCC---------c--------------eEEEcCCCCHH
Q 013965 330 K----YNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMDGW---------P--------------ALSIHGDKSQA 381 (433)
Q Consensus 330 k----~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------~--------------~~~lh~~~~~~ 381 (433)
+ ...+.+.... .....++++.|.++.-|..+++....... . ....|.. ...
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 578 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKD 578 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHH
Confidence 0 0111111222 22344777777777745444444322100 0 0000111 122
Q ss_pred HHHHHHHH--HhcCCCCEEEEccccccCCCc-cCeEEEEcCCCcccccccCCCCC
Q 013965 382 ERDWVLSE--FKAGKSPIMTATDVAARGLGN-CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 382 ~r~~~~~~--f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
.+.....+ .+....++||.++++-+|.|. +-+++-+|-|.-.+.-++..|+|
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK~Lk~H~L~QAisRt 633 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKPLKYHNLIQAISRT 633 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEeccccccchHHHHHHHh
Confidence 33344444 345678899999999999999 88888889887666666666553
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.08 E-value=3.3e-09 Score=95.27 Aligned_cols=127 Identities=26% Similarity=0.295 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|++.|.-++-.+..|+ ++.+.||-|||++..+|++..... |..|=|++....||..=++++..+...++
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 68899998887776666 999999999999988888777665 77799999999999999999999999999
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHH-HHHHcCCc------ccccceeEeeccchhhh
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLI-DMLESHNT------NLRRVTYLVLDEADRML 259 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~~------~l~~~~~lVvDEah~~~ 259 (433)
+.+..++.+.+....... -.++|+++|...+. +++..... ..+.+.++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999988765433222 24789999999885 44543211 14678999999999654
No 169
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.06 E-value=5.6e-10 Score=82.48 Aligned_cols=72 Identities=32% Similarity=0.420 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 359 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 359 ~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
.+++.|+..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+ +++||++++|.+...|....
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~ 75 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRI 75 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhh
Confidence 4677888889999999999999999999999999999999999999999999 99999999999988876543
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=8.5e-09 Score=97.49 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=196.3
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEcc-CCCch--hHHHHHHHHHHHhcCC--------C-CCC--------------CCCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAE-TGSGK--TLAYLLPAIVHVNAQP--------F-LAP--------------GDGP 173 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~-TGsGK--T~~~~l~~l~~~~~~~--------~-~~~--------------~~~~ 173 (433)
..+|+.|.+.+..+.+.+|++..-. .+.|+ +-.|.+.+|.|+.... . ... -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4689999999999999999876422 23454 4578888998875321 0 011 1268
Q ss_pred EEEEEecCHHHHHHHHHHHHHhccCCCc---------eEEEEECCc--------cChHhHHHh-----------------
Q 013965 174 IVLVLAPTRELAVQIQQESTKFGASSKI---------KSTCIYGGV--------PKGPQVRDL----------------- 219 (433)
Q Consensus 174 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~---------~~~~~~g~~--------~~~~~~~~~----------------- 219 (433)
+||||||+|+-|..+...+..++.+..- +...-+++. .+....+.+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999988887433221 111111110 000001111
Q ss_pred --------hcCCcEEEeChHHHHHHHHcC------CcccccceeEeeccchhhhcCCcHHHHHHHHHhcC---C------
Q 013965 220 --------QKGVEIVIATPGRLIDMLESH------NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR---P------ 276 (433)
Q Consensus 220 --------~~~~~Iiv~Tp~~l~~~l~~~------~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~---~------ 276 (433)
....||+||+|=-|..++.+. ...|+.+.++|||-||.++...|+ .+.-++..+. .
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 125799999998887777632 224788999999999988766554 3444444332 1
Q ss_pred ---------------CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCc------ccccceee---eeec----cChh
Q 013965 277 ---------------DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDL------KANHAIRQ---HVDI----VSES 328 (433)
Q Consensus 277 ---------------~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~----~~~~ 328 (433)
-+|+++||+--.+....+...++.+..-......-. .....+.| .+.+ ....
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 248888888877777777777776532221111000 01111111 1211 1123
Q ss_pred HHHHHHHHHH-HhhcC--CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccc-
Q 013965 329 QKYNKLVKLL-EDIMD--GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA- 404 (433)
Q Consensus 329 ~k~~~l~~~l-~~~~~--~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~- 404 (433)
.+...+...| -.+.+ ..-+|||.++.=+--.+..++++..+....+|.-.++..-.++-+-|-.|+..||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 3444433322 22211 2358999999999999999999988888888888888888888889999999999999644
Q ss_pred -ccCCCc--cCeEEEEcCCCccccc
Q 013965 405 -ARGLGN--CACVIIVLCTFVLYLT 426 (433)
Q Consensus 405 -~~Gldi--~~~Vi~~d~p~~~~~~ 426 (433)
-+-.+| +..||+|.+|+...-|
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FY 638 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFY 638 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHH
Confidence 344666 9999999999987665
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.00 E-value=1.2e-08 Score=103.32 Aligned_cols=127 Identities=23% Similarity=0.216 Sum_probs=93.1
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCce
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 202 (433)
+|+=.|.+-.+.-...-+.-+.||-|||+++.+|+.-..+. |..+.+++..--||..-++++..+...+++.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 44445555555555667889999999999999998665554 5567888888889999999999999999999
Q ss_pred EEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC------CcccccceeEeeccchhhh
Q 013965 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lVvDEah~~~ 259 (433)
+.+...+.+...+... -.|||.++|-..| .+.+..+ ......+.+.|+||+|.++
T Consensus 152 vG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 9998888765544333 3589999998766 2333221 1124457899999999644
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.70 E-value=1e-07 Score=85.73 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=51.3
Q ss_pred CcHHHHHHHHhHhcCCc-EEEEccCCCchhHHHHHHHHHHHhcCC-CCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 122 PTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~-~lv~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
+.+.|.+|+..+++... .+|.||.|+|||.+ +..++..+.... ......+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57899999999999988 99999999999975 444444441100 00122378899999999999999999888
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.70 E-value=3e-07 Score=95.44 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=86.0
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH---------HhccCCCceEEEEEC
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST---------KFGASSKIKSTCIYG 208 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~---------~~~~~~~~~~~~~~g 208 (433)
++.+.++||+|||.+|+-.++....... -.+.||+||+.+....+.+.+. .......++...+.+
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S 134 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINA 134 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEec
Confidence 7899999999999998877766544322 4579999999988877765543 212222344444433
Q ss_pred Cc-------cChHhHHHhhc-------CCcEEEeChHHHHHHHH--cC--------C-cccccc----eeEeeccchhhh
Q 013965 209 GV-------PKGPQVRDLQK-------GVEIVIATPGRLIDMLE--SH--------N-TNLRRV----TYLVLDEADRML 259 (433)
Q Consensus 209 ~~-------~~~~~~~~~~~-------~~~Iiv~Tp~~l~~~l~--~~--------~-~~l~~~----~~lVvDEah~~~ 259 (433)
+. +....++.... ...|+|+|.+.|..-.. .. . ..+..+ -+||+||.|++.
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 22 11222222221 47899999988754211 10 0 111111 379999999974
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 260 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
.. ...+..| ..+.|.. ++.+|||.+.
T Consensus 215 ~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 215 RD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred cc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 42 2234443 5666655 5669999986
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.62 E-value=2.3e-07 Score=80.72 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHhHhcCC--cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 121 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~--~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
++++-|.+++..++.+. -+++.++.|+|||.+ +..+...+... +.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 36889999999997543 577889999999985 44455555442 6789999999888877655521
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC----cccccceeEeeccchhhhcCCcHHHHHHHHHhc
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN----TNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 274 (433)
+. ..|..+++....... ..+...++||||||-.+. ...+..++...
T Consensus 68 --~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 11 112111111111100 115567899999999764 34677777777
Q ss_pred CC-CCcEEEEEe
Q 013965 275 RP-DRQTLYWSA 285 (433)
Q Consensus 275 ~~-~~~~l~~SA 285 (433)
+. +.+++++-=
T Consensus 118 ~~~~~klilvGD 129 (196)
T PF13604_consen 118 KKSGAKLILVGD 129 (196)
T ss_dssp -T-T-EEEEEE-
T ss_pred HhcCCEEEEECC
Confidence 66 566665543
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.51 E-value=2.6e-06 Score=76.94 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhc----------CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 105 GFPDYVMQEISKAGFFEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 105 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~----------g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
.||+.+.+. ..++..|.+++-.+-+ +.-.++-..||.||--...-.+++.+... ..+
T Consensus 27 ~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r 93 (303)
T PF13872_consen 27 HLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKR 93 (303)
T ss_pred CCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCc
Confidence 677765553 2468899998865532 34578888999999986555556665542 346
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC---Cccc-------
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH---NTNL------- 244 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~---~~~l------- 244 (433)
+|.+..+..|-....+.+..++.. .+.+..+..-... ....-...|+++|+..|....... ...+
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 899999999999999999988754 3444433321111 011224579999999887765321 1111
Q ss_pred -cc-ceeEeeccchhhhcCCc--------HHHHHHHHHhcCCCCcEEEEEeccchHHH
Q 013965 245 -RR-VTYLVLDEADRMLDMGF--------EPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 245 -~~-~~~lVvDEah~~~~~~~--------~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
.+ =.+||+||||......- ...+..+-..+ |+.+++.+|||--.+.+
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 11 25899999998754422 23444444555 56669999999755443
No 176
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.48 E-value=2.4e-06 Score=74.39 Aligned_cols=127 Identities=20% Similarity=0.379 Sum_probs=87.3
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhc---CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK---GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~---g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
.|+....|.+++=.+... --.|+.|.+....+.+ ++|.+.++-+|.|||.+ ++|++..+.++. ..-+.
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 567777888887776533 2579999999988875 57999999999999998 999998888753 34566
Q ss_pred EEecCHHHHHHHHHHHHH-hccCCCceEEEE--ECCccChH----hH----HHhhcCCcEEEeChHHHHHH
Q 013965 177 VLAPTRELAVQIQQESTK-FGASSKIKSTCI--YGGVPKGP----QV----RDLQKGVEIVIATPGRLIDM 236 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~-~~~~~~~~~~~~--~g~~~~~~----~~----~~~~~~~~Iiv~Tp~~l~~~ 236 (433)
+++| ++|..|..+.+.. ++.-.+-++..+ .-....+. .. ........|+++||+.++.+
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 6677 5899999988876 433333333222 22222211 11 12334678999999988654
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.47 E-value=1.3e-06 Score=75.37 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=73.7
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
.++.|..++.+++...-+++.||.|+|||+.++..++..+... .-.+++|+-|..+.... +--+-....-
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~----lGflpG~~~e 74 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGED----LGFLPGDLEE 74 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT--------SS------
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccc----cccCCCCHHH
Confidence 4789999999999888999999999999999888888887653 25678898887643211 1110000000
Q ss_pred eEEEE-------ECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc
Q 013965 202 KSTCI-------YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (433)
Q Consensus 202 ~~~~~-------~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 274 (433)
+.... ............+.....|-+..+. +++- -.+. -.+||+|||+.+. ..+++.++.++
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~----~iRG--rt~~-~~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLA----FIRG--RTFD-NAFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGG----GGTT----B--SEEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehh----hhcC--cccc-ceEEEEecccCCC----HHHHHHHHccc
Confidence 00000 0000001112222233444444421 1111 1122 3899999999753 55888999999
Q ss_pred CCCCcEEEEEe
Q 013965 275 RPDRQTLYWSA 285 (433)
Q Consensus 275 ~~~~~~l~~SA 285 (433)
..+.+++++.-
T Consensus 144 g~~skii~~GD 154 (205)
T PF02562_consen 144 GEGSKIIITGD 154 (205)
T ss_dssp -TT-EEEEEE-
T ss_pred CCCcEEEEecC
Confidence 88888887653
No 178
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.33 E-value=2.2e-05 Score=78.02 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=68.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCC------------------ceEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMDGW------------------PALSIHGDKSQAERDWVLSEFKAGK---SPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~~~------------------~~~~lh~~~~~~~r~~~~~~f~~g~---~~iLvaT~ 402 (433)
+.++|||.+.....+.+.+.|.+..+ .-..+.|..+..+|++.++.|++.- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45899999999999999988876422 2245788899999999999998743 24899999
Q ss_pred ccccCCCc--cCeEEEEcCCCccccccc
Q 013965 403 VAARGLGN--CACVIIVLCTFVLYLTLG 428 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~~d~p~~~~~~l~ 428 (433)
...-|||+ .+.+|+||+-++...-.+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaq 826 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQ 826 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccch
Confidence 99999999 889999999877665554
No 179
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.31 E-value=7.8e-06 Score=82.72 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=88.4
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCce
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 202 (433)
.++|.+|+-.++.++-+++.+++|+|||.+ +..++..+... .......+++++||..-|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~---~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQL---ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHh---cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999999999999999999986 33344433321 11124679999999988888887766533222110
Q ss_pred EEEEECCccChHhHHHhhcCCcEEEeChHHHHHHH------HcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l------~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
. ........-..|..+|+... .....+.-.+++|||||+-++- ...+..++..+++
T Consensus 230 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPP 291 (615)
T ss_pred -----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhccc
Confidence 0 00001111233433433221 1111233457999999998642 4566777888888
Q ss_pred CCcEEEEEec
Q 013965 277 DRQTLYWSAT 286 (433)
Q Consensus 277 ~~~~l~~SAT 286 (433)
+.++|++.=.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888877533
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.31 E-value=1.7e-06 Score=84.32 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=65.9
Q ss_pred HHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 113 EISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
.+...++.++..-|..|+.+++...-.++++|+|+|||.+ ...++.++..+. +..+||++|+..-+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~~------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQH------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHhc------CCceEEEcccchhHHHHHHHH
Confidence 4555678889999999999999999999999999999997 444455554432 567999999999999999888
Q ss_pred HHhccCCCceEEEE
Q 013965 193 TKFGASSKIKSTCI 206 (433)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (433)
.+.+ ++++-+
T Consensus 475 h~tg----LKVvRl 484 (935)
T KOG1802|consen 475 HKTG----LKVVRL 484 (935)
T ss_pred HhcC----ceEeee
Confidence 7754 555443
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.29 E-value=4.5e-06 Score=79.77 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=68.7
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 217 (433)
.++|.|..|||||+. ++-++..+. ....+..++++++..+|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~-----~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQ-----NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhh-----ccccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 478999999999997 444444441 1122677999999999999888887663200
Q ss_pred HhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-------cHHHHHHHHHh
Q 013965 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-------FEPQIKKILSQ 273 (433)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-------~~~~~~~i~~~ 273 (433)
......+..+..+...+.........+++|||||||++...+ ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 011223344444444333223346779999999999998732 24566666655
No 182
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.26 E-value=1.4e-05 Score=80.74 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=87.3
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCce
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIK 202 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 202 (433)
.+.|..|+..++.++-+++.|+.|+|||.+ +..++..+..... .. ...++++++||---|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~-~~-~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP-KQ-GKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc-cc-CCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 379999999999999999999999999986 3334443332210 00 13579999999888887777665533221110
Q ss_pred EEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHH------cCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 203 STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE------SHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~------~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
. .......+-..|..+|+.... ....+...+++||||||-++. ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 000111122344444433211 111223468999999998653 3467778888888
Q ss_pred CCcEEEEE
Q 013965 277 DRQTLYWS 284 (433)
Q Consensus 277 ~~~~l~~S 284 (433)
..++|++.
T Consensus 286 ~~rlIlvG 293 (586)
T TIGR01447 286 NTKLILLG 293 (586)
T ss_pred CCEEEEEC
Confidence 88888765
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.22 E-value=1e-05 Score=82.74 Aligned_cols=67 Identities=22% Similarity=0.208 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 120 FEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..+++.|.+|+..++.. ..+++.||+|+|||.+ +..++.++... +.++|+++||..-+.++.+.+.+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998876 6788999999999986 44444444432 66899999999999999888876
No 184
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.20 E-value=1.9e-05 Score=82.15 Aligned_cols=124 Identities=19% Similarity=0.131 Sum_probs=78.6
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
..+++.|.+|+..+..++-+++.++.|+|||.+ +-.++..+.... ....+++++||-.-|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc-------
Confidence 478999999999999989999999999999985 334444443320 0156889999977776443321
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc-----CCcccccceeEeeccchhhhcCCcHHHHHHHHHhc
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-----HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-----~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 274 (433)
+... .|..+++.+... ........++||||||+++.. ..+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 1110 121122111000 001134578999999997642 3556677778
Q ss_pred CCCCcEEEEE
Q 013965 275 RPDRQTLYWS 284 (433)
Q Consensus 275 ~~~~~~l~~S 284 (433)
+.+.+++++.
T Consensus 441 ~~~~rlilvG 450 (720)
T TIGR01448 441 PDHARLLLVG 450 (720)
T ss_pred CCCCEEEEEC
Confidence 8888888764
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.18 E-value=3.1e-05 Score=68.91 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH-------H
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-------Q 189 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~-------~ 189 (433)
.++.-.+..|...+.++.+...+++.||+|+|||+.+...++..+.... -.+++|.-|+.+....+ .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~------~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD------VDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC------eeEEEEeCCCCCchhhhCcCCCCHH
Confidence 3445568899999999988888999999999999986666665554321 34566666664322110 1
Q ss_pred HHH----HHhccCCCceEEEEECCccChHhHHHh--hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 190 QES----TKFGASSKIKSTCIYGGVPKGPQVRDL--QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 190 ~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
+.+ .-+.+.+.. +.+. .....+ .....|-|.. +.+++-.. +. -++||+|||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~----l~ymRGrt--l~-~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAP----FAYMRGRT--FE-NAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEec----HHHhcCCc--cc-CCEEEEechhcCC----
Confidence 111 111111000 0010 111111 1123344444 23333322 22 4899999999753
Q ss_pred HHHHHHHHHhcCCCCcEEEE
Q 013965 264 EPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~ 283 (433)
..++..++..+..+.++++.
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEe
Confidence 36788888888888877654
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.17 E-value=9.5e-06 Score=78.87 Aligned_cols=65 Identities=26% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHhHhcCCc-EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 121 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~-~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
.+.+-|.+|+..+.+.++ .++.||+|+|||.+....+.+.+.. +.++||++||.+-+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 467889999999988754 7778999999999844444444443 6789999999999998888644
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.10 E-value=1.8e-05 Score=56.94 Aligned_cols=60 Identities=32% Similarity=0.333 Sum_probs=40.2
Q ss_pred HHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 129 GWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 129 ~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
++...+. +.-++|.+|.|+|||...+ ..+..+.... ... +.++||++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLA-ARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHH-HHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444 4446669999999997633 3333333210 112 567999999999999998888
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.96 E-value=6.3e-05 Score=76.22 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHhHhc----CCcEEEEccCCCchhHHHHHHHHHHHhcCC-----------C-----CCC-----------
Q 013965 121 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPAIVHVNAQP-----------F-----LAP----------- 169 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~----g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~-----------~-----~~~----------- 169 (433)
+|++.|...+..+++ .++.++..|||+|||++.+-..|.+..... . ...
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999888777664 688999999999999975444443332111 0 000
Q ss_pred -------CCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 170 -------GDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 170 -------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
-.-|++.+-.-|..-..|+.+++++.+-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01578888888888899999999886543
No 189
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.93 E-value=0.00017 Score=75.31 Aligned_cols=121 Identities=21% Similarity=0.151 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 121 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+++-|.+|+..++.+ +-+++.++.|+|||.. +-.+...+... +..+++++||--.+..+.+. .
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~~~-------~ 416 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQAE-------S 416 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHHhc-------c
Confidence 5799999999998874 6789999999999985 33343333332 67899999996655444321 1
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh-cCCCC
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDR 278 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~-~~~~~ 278 (433)
++.. .|..++...+......+...++||||||-++... .+..++.. .....
T Consensus 417 g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~ 468 (744)
T TIGR02768 417 GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGA 468 (744)
T ss_pred CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCC
Confidence 1111 1222332222222334667899999999976433 23344442 23456
Q ss_pred cEEEEE
Q 013965 279 QTLYWS 284 (433)
Q Consensus 279 ~~l~~S 284 (433)
++|++.
T Consensus 469 kliLVG 474 (744)
T TIGR02768 469 KVVLVG 474 (744)
T ss_pred EEEEEC
Confidence 666655
No 190
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.88 E-value=0.00013 Score=77.60 Aligned_cols=123 Identities=22% Similarity=0.121 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHhHhcCC-cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 121 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~-~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+++-|.+|+..++.++ -+++.+..|+|||.. +-++...+... +.+++.++||-.-+....+ ..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L~e-------~t 410 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA-------GYEVRGAALSGIAAENLEG-------GS 410 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEecCcHHHHHHHhh-------cc
Confidence 68999999999999865 578999999999985 44444444332 7789999999655543321 11
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc-CCCC
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDR 278 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~ 278 (433)
++. -.|..+|+.-.......+...++|||||+-++... .+..++... +...
T Consensus 411 Gi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~ga 462 (988)
T PRK13889 411 GIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGA 462 (988)
T ss_pred Ccc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCC
Confidence 111 11333332222223334667899999999975433 444555433 4566
Q ss_pred cEEEEEec
Q 013965 279 QTLYWSAT 286 (433)
Q Consensus 279 ~~l~~SAT 286 (433)
++|++.=+
T Consensus 463 rvVLVGD~ 470 (988)
T PRK13889 463 KVVLVGDP 470 (988)
T ss_pred EEEEECCH
Confidence 77766533
No 191
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.80 E-value=7.6e-05 Score=75.41 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=77.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH-------H-HHhccCCCceEEEEEC
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE-------S-TKFGASSKIKSTCIYG 208 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~-------~-~~~~~~~~~~~~~~~g 208 (433)
-++=|.++||+|||.||+-.++.....-. -.+.+|||||.+.-.-+... | +....+..+....+
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG------~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~-- 146 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG------LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIY-- 146 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC------ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEee--
Confidence 36888999999999999877765433211 34689999998866553322 2 22222222222221
Q ss_pred CccChHhHHHhhcCCcEEEeChHHHHHH------HHcCCcc--------------cccc-eeEeeccchhhhcCCcHHHH
Q 013965 209 GVPKGPQVRDLQKGVEIVIATPGRLIDM------LESHNTN--------------LRRV-TYLVLDEADRMLDMGFEPQI 267 (433)
Q Consensus 209 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~------l~~~~~~--------------l~~~-~~lVvDEah~~~~~~~~~~~ 267 (433)
+.......-.....+.+++.|...+..- +.+.... +..+ -++|+||-|+|... -..+
T Consensus 147 ~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~ 224 (985)
T COG3587 147 DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTY 224 (985)
T ss_pred chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHH
Confidence 1111111112234577777776554321 2111111 1111 37999999998653 2223
Q ss_pred HHHHHhcCCCCcEEEEEeccchHHH
Q 013965 268 KKILSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 268 ~~i~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
..+ ..+. ..-++=++||++++..
T Consensus 225 ~~i-~~l~-pl~ilRfgATfkd~y~ 247 (985)
T COG3587 225 GAI-KQLN-PLLILRFGATFKDEYN 247 (985)
T ss_pred HHH-HhhC-ceEEEEecccchhhhc
Confidence 222 2232 2336678999987665
No 192
>PRK04296 thymidine kinase; Provisional
Probab=97.76 E-value=7.2e-05 Score=64.76 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=58.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC---HHHHHHHHHHHHHhccCCCceEEEEECCccC
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT---RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt---r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 212 (433)
|.-.++.+|+|+|||+..+ -++..+... +.+++++-|. +....+ +....++...
T Consensus 2 g~i~litG~~GsGKTT~~l-~~~~~~~~~-------g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~-------- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELL-QRAYNYEER-------GMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE-------- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHH-HHHHHHHHc-------CCeEEEEeccccccccCCc-------EecCCCCccc--------
Confidence 3457889999999998644 334333322 6678888663 211111 1111111100
Q ss_pred hHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
.+.+..+..+.+.+.. .-.++++|||||+|.+. ..++..++..+.+....+++++-
T Consensus 59 -----------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -----------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0123445555555544 23468999999998642 23455566664444444545443
No 193
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.73 E-value=0.0002 Score=73.44 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=86.1
Q ss_pred cCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCc-EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 102 RDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 102 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~-~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
....+.|.+.+. -+..+..-|++|+-.++..+| .+|.|=+|+|||.. +..++..+... |.+||+.+=
T Consensus 654 ~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~-------gkkVLLtsy 721 (1100)
T KOG1805|consen 654 LSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVAL-------GKKVLLTSY 721 (1100)
T ss_pred cccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHc-------CCeEEEEeh
Confidence 344566666553 234678999999999988766 67778899999985 22223332222 778999999
Q ss_pred CHHHHHHHHHHHHHhccCCCceEEEEECCccCh-----------------HhHHHhhcCCcEEEeChHHHHHHHHcCCcc
Q 013965 181 TRELAVQIQQESTKFGASSKIKSTCIYGGVPKG-----------------PQVRDLQKGVEIVIATPGRLIDMLESHNTN 243 (433)
Q Consensus 181 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~-----------------~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 243 (433)
|..-+..+.-.++.+... +.-+..+.... .........+.||.||---+.+-+ +.
T Consensus 722 ThsAVDNILiKL~~~~i~----~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~ 793 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGFGIY----ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FV 793 (1100)
T ss_pred hhHHHHHHHHHHhccCcc----eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hh
Confidence 998888887777765422 21111111111 112233346778888853332222 23
Q ss_pred cccceeEeeccchhhh
Q 013965 244 LRRVTYLVLDEADRML 259 (433)
Q Consensus 244 l~~~~~lVvDEah~~~ 259 (433)
.+.|++.|+|||-.++
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 4669999999999755
No 194
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.72 E-value=0.00047 Score=73.81 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 120 FEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
..+++-|.+++..+.. ++-++++|+.|+|||.. +-++...+... |..++.++||-.-+....+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgkAA~~L~e~------- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGKAAEGLEKE------- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHHHHHHHHHh-------
Confidence 3689999999998764 56789999999999985 44444444332 77899999996555443221
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC-CC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PD 277 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-~~ 277 (433)
.++.. .|..+|+.........+..-++||||||.++.. ..+..++.... ..
T Consensus 445 ~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEAVTRAG 496 (1102)
T ss_pred hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 12221 122222111112233466678999999996543 34445555553 46
Q ss_pred CcEEEEEec
Q 013965 278 RQTLYWSAT 286 (433)
Q Consensus 278 ~~~l~~SAT 286 (433)
.++|++.=+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 677766543
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00043 Score=65.00 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=43.1
Q ss_pred ccceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
..+++|++|.+.++. +......++++.....++..++.++||...+....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 347899999999875 3446778888888888888899999998777666666654
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.64 E-value=0.0032 Score=72.48 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=128.6
Q ss_pred CCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
.+++-|.+++..++.+ +-.++.++.|+|||.. +-.++..+... |..+++++||-.-+....+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-------GYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 5789999999998875 6789999999999985 44444444332 7789999999776655544322110
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc-CCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPD 277 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~ 277 (433)
..+ ......+.. ..-..|...++ .....+..-++||||||-++.. ..+..++... +.+
T Consensus 499 -----~Ti------~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 499 -----STF------ITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHN 557 (1960)
T ss_pred -----hhH------HHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcC
Confidence 000 000000011 11112222222 2233356789999999997643 3555666544 467
Q ss_pred CcEEEEEec--cch----HHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc-CCCeEEEE
Q 013965 278 RQTLYWSAT--WPK----EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM-DGSRILIF 350 (433)
Q Consensus 278 ~~~l~~SAT--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF 350 (433)
.++|++.=+ ++. .+..++.... -+.. ...... .....+ .+....+.++...+.+.+.... ...+++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~-~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGG-VTTY-AWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCC-CcEE-Eeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 888877644 221 2233333321 1111 111110 111111 1222334455556666555544 33469999
Q ss_pred eCCcccHHHHHHHHHh----CC------CceEEEc-CCCCHHHHHHHHHHHhcCC
Q 013965 351 MDTKKGCDQITRQLRM----DG------WPALSIH-GDKSQAERDWVLSEFKAGK 394 (433)
Q Consensus 351 ~~s~~~~~~l~~~L~~----~~------~~~~~lh-~~~~~~~r~~~~~~f~~g~ 394 (433)
..+.++...|...++. .| +....+. ..++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9999998888877754 22 2233333 35666666643 6666655
No 197
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00051 Score=66.96 Aligned_cols=142 Identities=20% Similarity=0.147 Sum_probs=70.2
Q ss_pred EEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCh----Hh
Q 013965 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA-SSKIKSTCIYGGVPKG----PQ 215 (433)
Q Consensus 141 v~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~----~~ 215 (433)
..++||||||++..-.+|..... . ....|+.|..-..+......+..-.. ..-..-...+++.... ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-g------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-G------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-c------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 35789999999755444444332 1 33466666654444433322211000 0000000111111110 00
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCC---c---ccccce-eEeeccchhhhcCC-------------cHHHHHHHHHhcC
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHN---T---NLRRVT-YLVLDEADRMLDMG-------------FEPQIKKILSQIR 275 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~---~l~~~~-~lVvDEah~~~~~~-------------~~~~~~~i~~~~~ 275 (433)
......+..|+++|.+.|...+.+.. + ++.+.. +++-||||++-... ++..+...+ .-.
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-~~n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-EQN 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-hcC
Confidence 11123467899999999876554422 2 244444 45679999875321 222222222 234
Q ss_pred CCCcEEEEEeccchH
Q 013965 276 PDRQTLYWSATWPKE 290 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~ 290 (433)
++.-++.+|||.|++
T Consensus 154 kd~~~lef~at~~k~ 168 (812)
T COG3421 154 KDNLLLEFSATIPKE 168 (812)
T ss_pred CCceeehhhhcCCcc
Confidence 566788899999843
No 198
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.63 E-value=8.4e-05 Score=62.87 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=57.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhCCC--ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc--ccccCCCc----cCeEE
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMDGW--PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD--VAARGLGN----CACVI 415 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~--~~~~Gldi----~~~Vi 415 (433)
.+.+|||++|.+..+.+.+.+..... ....+.. ...++..+++.|++++..||+++. .+++|||+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 47899999999999999999976531 1222332 255788999999999999999998 99999999 88999
Q ss_pred EEcCCC
Q 013965 416 IVLCTF 421 (433)
Q Consensus 416 ~~d~p~ 421 (433)
+..+|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 999996
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00033 Score=56.57 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=12.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
+++.+++.|++|+|||..
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 356789999999999986
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.59 E-value=0.00056 Score=63.05 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=86.8
Q ss_pred CCCCCCcHHHHHHHHhHhcCC--cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH----H
Q 013965 117 AGFFEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ----Q 190 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~--~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~----~ 190 (433)
+|+.-..-.|.-|+..++... =|.+.++.|+|||+.++.+.+.....++. ..++||.=|+..+-..+- .
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCc
Confidence 566666778999999988754 47788999999999988888888776532 456888888765543320 0
Q ss_pred HHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCccccc----------ceeEeeccchhhhc
Q 013965 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRR----------VTYLVLDEADRMLD 260 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~----------~~~lVvDEah~~~~ 260 (433)
+-+++.+..+ +.......+.. .-=++.+.+...+....+.+.. =.+||+|||+.+
T Consensus 299 eEeKm~PWmq----------~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL-- 363 (436)
T COG1875 299 EEEKMGPWMQ----------AIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL-- 363 (436)
T ss_pred hhhhccchHH----------HHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc--
Confidence 0000000000 00000011111 1111233444454444332221 168999999976
Q ss_pred CCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 261 MGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 261 ~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
-..++.-|+.+..++.+++++.
T Consensus 364 --TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 --TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred --CHHHHHHHHHhccCCCEEEEcC
Confidence 3568888999998888888754
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.58 E-value=0.00024 Score=66.84 Aligned_cols=123 Identities=20% Similarity=0.104 Sum_probs=73.8
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
+++-|.+++.. ...+++|.|..|||||.+.+--++..+.... .+..++|++++|+..+..+.+++.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47889999988 6778999999999999985544444444321 22456999999999999999999885432210
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHH-HcCCccc-ccceeEeeccch
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML-ESHNTNL-RRVTYLVLDEAD 256 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l-~~~~~~l-~~~~~lVvDEah 256 (433)
. ................+.|+|...+...+ ....... -.-.+-++|+..
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 00000111222234678899988776433 3211111 112456667766
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0021 Score=61.65 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=70.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEE-EEEecC-HHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV-LVLAPT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~-lil~Pt-r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
+.+++++|||+|||++..-.+ .++... ....+.++ ++-+-+ |.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~---~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGIN---SDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA--------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhh---hccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe---------
Confidence 568899999999999643222 222211 00013333 343433 3333333 44444444443322
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhcCCC-CcEEEEEeccch-HH
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPD-RQTLYWSATWPK-EV 291 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~~-~~~l~~SAT~~~-~~ 291 (433)
+-++..+...+.. +.++++|++|++.++.... ....+..++....++ -.++.+|||... ++
T Consensus 239 ------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 ------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred ------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 1234445444443 4568999999999865321 234555666655443 467889999853 34
Q ss_pred HHHHHHh
Q 013965 292 EHLARQY 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
.+.+..|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 4555555
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00056 Score=64.91 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
+..+++++|||+|||+.....+....... + ..++.++. +...-.--.+.++.++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G-~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~---------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-----G-ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA---------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----C-CCeEEEEe-cccccccHHHHHHHHHHHcCCceEe----------
Confidence 56899999999999996433332222221 0 12343333 2222111223344443333333222
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEEeccchHH-HH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEV-EH 293 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~ 293 (433)
+.+++.+...+.. +.+.++|+||++-+..... ....+..+.....+...++.+|||...+. .+
T Consensus 200 -----------~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 200 -----------VKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred -----------cCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 2333334333332 4567999999997543221 23333333232334456888999985443 44
Q ss_pred HHHHhc
Q 013965 294 LARQYL 299 (433)
Q Consensus 294 ~~~~~~ 299 (433)
.+..|.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 555553
No 204
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.52 E-value=0.00027 Score=67.83 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=43.5
Q ss_pred CcHHHHHHHHhH------hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 122 PTPIQAQGWPMA------LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 122 ~~~~Q~~~i~~~------l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
+++-|++++..+ .++.++++.|+-|+|||.. +-.+...... .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 578899998888 5688999999999999984 4343333322 267899999997655444
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.0014 Score=53.62 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999974
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0038 Score=59.26 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=71.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec--CH-HHHHHHHHHHHHhccCCCceEEEEECCccCh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP--TR-ELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P--tr-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 213 (433)
+.+++++|||+|||+.....+. .+..+ +.++.++.. .| ..+.|+. .++...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~-------GkkVglI~aDt~RiaAvEQLk----~yae~lg------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK-------KKTVGFITTDHSRIGTVQQLQ----DYVKTIG------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc-------CCcEEEEecCCcchHHHHHHH----HHhhhcC-------------
Confidence 5688999999999996433332 33221 444444432 23 2333333 3322222
Q ss_pred HhHHHhhcCCcEE-EeChHHHHHHHHcCCcccccceeEeeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccc-hH
Q 013965 214 PQVRDLQKGVEIV-IATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (433)
Q Consensus 214 ~~~~~~~~~~~Ii-v~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~-~~ 290 (433)
+.++ +.+|..+.+.+..-.. -.++++|++|-+=+.... .....+.+++....++..++.+|||.. .+
T Consensus 297 ---------ipv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 297 ---------FEVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ---------CcEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 2222 3466666665543111 124899999999765432 134455666666666666777998764 45
Q ss_pred HHHHHHHhc
Q 013965 291 VEHLARQYL 299 (433)
Q Consensus 291 ~~~~~~~~~ 299 (433)
+...++.|-
T Consensus 367 ~~~i~~~F~ 375 (436)
T PRK11889 367 MIEIITNFK 375 (436)
T ss_pred HHHHHHHhc
Confidence 566776654
No 207
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00044 Score=62.16 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=41.0
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcC
Q 013965 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (433)
Q Consensus 93 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~ 164 (433)
.+|..+.+|+++++|+-+.+.+.. ...=++|.+|||||||+. +.+++.++..+
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 578888999999999877763321 122388999999999998 78888888765
No 208
>PRK08181 transposase; Validated
Probab=97.34 E-value=0.0032 Score=57.38 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=61.9
Q ss_pred cHHHHHHHH----hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 123 TPIQAQGWP----MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 123 ~~~Q~~~i~----~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
.+.|..++. ++..++++++.||+|+|||-.+. ++...+... +..++++. ..+|..++......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~-------g~~v~f~~-~~~L~~~l~~a~~~---- 155 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN-------GWRVLFTR-TTDLVQKLQVARRE---- 155 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc-------CCceeeee-HHHHHHHHHHHHhC----
Confidence 445554442 34468899999999999997422 333333332 44565554 34555544321100
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc-HHHHHHHHHhcCCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF-EPQIKKILSQIRPD 277 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~-~~~~~~i~~~~~~~ 277 (433)
.+...++.. +.++++|||||.+......+ ...+-.++......
T Consensus 156 -----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 156 -----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred -----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 022222222 44588999999996543322 23444555443334
Q ss_pred CcEEEEEeccch
Q 013965 278 RQTLYWSATWPK 289 (433)
Q Consensus 278 ~~~l~~SAT~~~ 289 (433)
..+|+.|-..+.
T Consensus 200 ~s~IiTSN~~~~ 211 (269)
T PRK08181 200 RSILITANQPFG 211 (269)
T ss_pred CCEEEEcCCCHH
Confidence 455555544433
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.33 E-value=0.0051 Score=58.22 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
++.+.+.||||.|||++..=.+...... .++...+||...|-=.. .+++++.+++-+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 6789999999999998633222222211 11244566666552221 2344555544434333
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccc-hHHHH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 293 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~ 293 (433)
.++-+|.-|...+.. +.++++|.||=+-+-. |.....+++.++....+..-.+.+|||.. .++..
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 344456666665554 6778999999887532 22245566666666656666788999974 34556
Q ss_pred HHHHhcCCC
Q 013965 294 LARQYLYNP 302 (433)
Q Consensus 294 ~~~~~~~~~ 302 (433)
....|-.-+
T Consensus 331 i~~~f~~~~ 339 (407)
T COG1419 331 IIKQFSLFP 339 (407)
T ss_pred HHHHhccCC
Confidence 666665443
No 210
>PRK06526 transposase; Provisional
Probab=97.33 E-value=0.0013 Score=59.49 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.1
Q ss_pred HhHhcCCcEEEEccCCCchhHHHH
Q 013965 131 PMALKGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 131 ~~~l~g~~~lv~a~TGsGKT~~~~ 154 (433)
..+..++++++.||+|+|||..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 344567899999999999998533
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00064 Score=55.20 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46799999999999985
No 212
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.28 E-value=0.0029 Score=60.90 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=46.9
Q ss_pred CCCCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 119 FFEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
|....|-|.+-+..+. .+.++++.+|+|+|||.+.+-.++....+.+. .-.+.++..-|..=++...++++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 4456777877665544 35689999999999999855555555544331 234567776666555555555554
Q ss_pred h
Q 013965 195 F 195 (433)
Q Consensus 195 ~ 195 (433)
+
T Consensus 90 l 90 (755)
T KOG1131|consen 90 L 90 (755)
T ss_pred H
Confidence 4
No 213
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.23 E-value=0.00082 Score=59.96 Aligned_cols=86 Identities=28% Similarity=0.369 Sum_probs=65.7
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCc-cChHhHHHhhc-CCcEEEeChHHHHHHHHcCCcccccce
Q 013965 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV-PKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVT 248 (433)
Q Consensus 171 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~ 248 (433)
..|.+|||+..-.-|..+.+.+..+.. -+..++-++.-. ...+++..+.. ..+|.||||+|+..++..+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 479999999987788888887777631 123444444333 44566666663 689999999999999999999999999
Q ss_pred eEeeccchh
Q 013965 249 YLVLDEADR 257 (433)
Q Consensus 249 ~lVvDEah~ 257 (433)
+||||--|+
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998764
No 214
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.21 E-value=0.0025 Score=65.21 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=74.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCC-CCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQP-FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
+-.|+....|-|||..-+..++.+-...+ ..........||+||+ ++..||..++.+......+.+...+| .. .
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~---k 227 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RT---K 227 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-cc---c
Confidence 35888899999999974443333221111 0011235568999997 67888998887666666677777666 11 1
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG 262 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~ 262 (433)
........+||++||+.+.. ....--.+-.+|+||||.+....
T Consensus 228 d~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 228 DKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred ccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcc
Confidence 12223467899999977653 12212346689999999877653
No 215
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.21 E-value=0.0013 Score=59.35 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=33.0
Q ss_pred CcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 241 NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 241 ~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
......+..+|+||||.|... -...+++.++.......+++.+--+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 344667899999999987654 4556777777766667777766553
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.0048 Score=53.50 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=37.7
Q ss_pred ccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHh
Q 013965 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
+++++|++|-+-+... ......+.+++....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4588999999976432 23456777888888888888999999876654444443
No 217
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0064 Score=59.37 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHH-hcCCCCCCCCCCEEEEE-ecC-HHHHHHHHHHHHHhccCCCceEEEEECCccC
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHV-NAQPFLAPGDGPIVLVL-APT-RELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~~lil-~Pt-r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 212 (433)
++.+++.+|||+|||+...-.+.... ... +.++.++ +.+ |.-+ .+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~-------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE-------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccHHHH---HHHHHHHHHHhCCceE--------
Confidence 46789999999999986433222222 121 3344444 333 3222 2333333322222221
Q ss_pred hHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHh-cCCCCcEEEEEeccch-
Q 013965 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQ-IRPDRQTLYWSATWPK- 289 (433)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~- 289 (433)
.+.++..+...+.. +.++++|+||.+-+... ......+..++.. ..+....+++|||...
T Consensus 283 -------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 283 -------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred -------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 22345555555543 34689999999865322 1123455566552 2344557889998764
Q ss_pred HHHHHHHHhc
Q 013965 290 EVEHLARQYL 299 (433)
Q Consensus 290 ~~~~~~~~~~ 299 (433)
++.+....|-
T Consensus 346 ~l~~~~~~f~ 355 (424)
T PRK05703 346 DLKDIYKHFS 355 (424)
T ss_pred HHHHHHHHhC
Confidence 4455555543
No 218
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.011 Score=53.70 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec-CH--HHHHHHHHHHHHhccCCCceEEEEECCcc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP-TR--ELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P-tr--~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 211 (433)
.+..+++.+++|+|||..+...+.. +..+ +..+.++.- +. ..+.|+...... .++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~---------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IGF---------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhh----cCc----------
Confidence 3478999999999999965443322 2221 334444433 22 355555433332 222
Q ss_pred ChHhHHHhhcCCcEEE-eChHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccc-
Q 013965 212 KGPQVRDLQKGVEIVI-ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWP- 288 (433)
Q Consensus 212 ~~~~~~~~~~~~~Iiv-~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~- 288 (433)
.+.. .++..+.+.+..- ....+++++++|-+=+... ......+.+++....++..++.+|||..
T Consensus 132 ------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 132 ------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 2222 2455554444321 1123589999999976532 2234456666666667666778999864
Q ss_pred hHHHHHHHHhc
Q 013965 289 KEVEHLARQYL 299 (433)
Q Consensus 289 ~~~~~~~~~~~ 299 (433)
.+..+.++.|-
T Consensus 199 ~d~~~~~~~f~ 209 (270)
T PRK06731 199 KDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHhC
Confidence 46667777664
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=97.11 E-value=0.0022 Score=57.50 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=29.4
Q ss_pred ccceeEeeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
.++++||+|++|.+... .+...+-.++.........++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35689999999976433 3455566777666554455667776544
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.0018 Score=57.90 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=29.9
Q ss_pred cccceeEeeccchhhhc-CCcHHHHHHHHHhcCC-CCcEEEEEeccchH
Q 013965 244 LRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRP-DRQTLYWSATWPKE 290 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~ 290 (433)
+.+.++||+||+|.+.. ..+...+..++..... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34678999999998753 2244455555555543 34567788776443
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.011 Score=52.95 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=55.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
..+++.+++|+|||.. +.++..++... +..++++ +..+|...+...+..
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~~---------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLR-------GKSVLII-TVADIMSAMKDTFSN---------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHhh----------------------
Confidence 4799999999999975 33444455432 5566666 333333332222110
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHH-HHHHHHHh-cCCCCcEEEEEec
Q 013965 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP-QIKKILSQ-IRPDRQTLYWSAT 286 (433)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~-~~~~i~~~-~~~~~~~l~~SAT 286 (433)
. -.+.+.+++. +.++++|||||++......+.. .+..|+.. ......+++.|--
T Consensus 149 ------~---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 ------S---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ------c---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 0 0122223322 4568999999999765544443 23334432 2334556655544
No 222
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.07 E-value=0.0026 Score=57.11 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=24.9
Q ss_pred cceeEeeccchhhhcC-CcHHHHHHHHHhcCC-CCcEEEEEeccch
Q 013965 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPK 289 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~-~~~~l~~SAT~~~ 289 (433)
++++|++||+|.+... .+...+..++..... ....+++|++.|+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3578999999987533 244455555554432 2323445555443
No 223
>PRK06921 hypothetical protein; Provisional
Probab=97.03 E-value=0.014 Score=53.36 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ 187 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q 187 (433)
.+.++++.|++|+|||.. +.++...+..+. +..++++.. .++..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~~------g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRKK------GVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhhc------CceEEEEEH-HHHHHH
Confidence 357899999999999974 334444444321 455666653 344443
No 224
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.02 E-value=0.0041 Score=65.36 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.++|-|.+++... ...++|.|..|||||.+ +..-+.++..... -...++|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 5799999999753 46799999999999998 4444445543211 113469999999999999999998865
No 225
>PRK08727 hypothetical protein; Validated
Probab=97.02 E-value=0.0042 Score=55.62 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=26.2
Q ss_pred cccceeEeeccchhhhcCC-cHHHHHHHHHhcCC-CCcEEEEEeccchHH
Q 013965 244 LRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP-DRQTLYWSATWPKEV 291 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~ 291 (433)
+.++++||+||+|.+.... ....+-.++..... ..++|+.|-..|.+.
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 3456899999999875432 22334444444332 334555454444443
No 226
>PHA02533 17 large terminase protein; Provisional
Probab=97.01 E-value=0.0059 Score=61.25 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=84.3
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|.|+|.+.+..+..++-.++..+=..|||.+....++......+ +..+++++|++.-|..+.+.++.......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~------~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK------DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 478999999987766666678888999999976654544443322 56899999999999998888876443221
Q ss_pred --ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC--
Q 013965 201 --IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-- 276 (433)
Q Consensus 201 --~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-- 276 (433)
++.. +... ......+.++..|.+.|.. .+...=....++++||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~-i~~~---~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPG-IVEW---NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcc-eeec---CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 1100 0000 0011112345666555421 1111123467899999997543 23333333333322
Q ss_pred CCcEEEEEec
Q 013965 277 DRQTLYWSAT 286 (433)
Q Consensus 277 ~~~~l~~SAT 286 (433)
..+++.+|..
T Consensus 200 ~~r~iiiSTp 209 (534)
T PHA02533 200 SSKIIITSTP 209 (534)
T ss_pred CceEEEEECC
Confidence 2345555544
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.01 E-value=0.003 Score=66.41 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..+++-|.+++.. ....++|.|..|||||.+ +..-+.++..+.. -+..++|+|+-|+..|..+.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3579999999965 346799999999999998 4444455544211 124479999999999999999998865
No 228
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.99 E-value=0.01 Score=51.12 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+++.||+|+|||...+-.+...+.. +..+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999998644444443332 566888765 466777777777664
No 229
>PRK12377 putative replication protein; Provisional
Probab=96.99 E-value=0.0089 Score=53.76 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~ 190 (433)
..++++.|++|+|||-. +.++...+... +..++++ +..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK-------GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCeEEE-EHHHHHHHHHH
Confidence 36799999999999974 33444444432 4445444 44566655543
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.98 E-value=0.025 Score=47.16 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=22.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
+++.|++|+|||..... ++..+.. .+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcc
Confidence 68899999999985332 2233222 1556777766443
No 231
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.014 Score=53.45 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~ 190 (433)
..+++.|++|+|||.. +.++...+..+ +..++++. ..++...+..
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~-------~~~v~~~~-~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK-------GVPVIFVN-FPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEE-HHHHHHHHHH
Confidence 3499999999999985 33455555542 34455553 4455544433
No 232
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.94 E-value=8.4e-05 Score=74.96 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc---CCCCEEEEccc
Q 013965 328 SQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA---GKSPIMTATDV 403 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~---g~~~iLvaT~~ 403 (433)
..|...|..+++.+. .+++|+||.+-.+..+-+.+++...+ ....+.|.....+|...+++|+. ....+|.+|..
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 456666777776654 46699999999999999999999888 88899999999999999999994 34558999987
Q ss_pred cccC
Q 013965 404 AARG 407 (433)
Q Consensus 404 ~~~G 407 (433)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 7655
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.91 E-value=0.0062 Score=54.29 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=25.0
Q ss_pred cceeEeeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
..++|||||+|.+... .+...+..++.........+++|++.+
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 3568999999987543 234555555554432223455666543
No 234
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.013 Score=60.57 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE-ecC-HHHHHHHHHHHHHhccCCCceEEEEECCccCh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL-APT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~Pt-r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 213 (433)
++-+.+++|||+|||++....+....... + +.++.++ +.+ |.=+ .+.++.++...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G-~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv---------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-----G-ADQLALLTTDSFRIGA---LEQLRIYGRILGVPV---------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-----C-CCeEEEecCcccchHH---HHHHHHHHHhCCCCc----------
Confidence 45688999999999986433332221111 0 1244443 332 2112 233343333322221
Q ss_pred HhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccc-hHH
Q 013965 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWP-KEV 291 (433)
Q Consensus 214 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~ 291 (433)
.++.+|..+.+.+.. +.+.++|+||=+=+... ......+..+.....+...++.+|||.. +.+
T Consensus 246 -----------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 246 -----------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred -----------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 123366666666654 45678999998886542 2234455555555567777888999874 334
Q ss_pred HHHHHHhc
Q 013965 292 EHLARQYL 299 (433)
Q Consensus 292 ~~~~~~~~ 299 (433)
.+.++.|-
T Consensus 311 ~~i~~~f~ 318 (767)
T PRK14723 311 NEVVHAYR 318 (767)
T ss_pred HHHHHHHh
Confidence 55666553
No 235
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.037 Score=54.77 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=64.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE-ec-CHHHHHHHHHHHHHhccCCCceEEEEECCccC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL-AP-TRELAVQIQQESTKFGASSKIKSTCIYGGVPK 212 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil-~P-tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 212 (433)
.|+.+.+++|||+|||+.....+....... .+.++.++ +. .|..+. +.+..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 467889999999999986432222221111 02234333 32 233222 2233333332322211
Q ss_pred hHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEEeccc-hH
Q 013965 213 GPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWP-KE 290 (433)
Q Consensus 213 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~-~~ 290 (433)
+.+++.+...+.. +.++++|+||.+-+..... ....+..+. .......+++++++.. .+
T Consensus 413 --------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhH
Confidence 1233445555543 4568999999997542211 122233222 2234456788888864 34
Q ss_pred HHHHHHHh
Q 013965 291 VEHLARQY 298 (433)
Q Consensus 291 ~~~~~~~~ 298 (433)
....++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 55555554
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.85 E-value=0.0074 Score=67.14 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
.+++-|.+|+..++.+ +-+++.+..|+|||... -.++..+... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l---~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML---PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH---hhccCceEEEEechHHHHHHH
Confidence 6899999999999965 67999999999999862 2222222110 111256799999996665544
No 237
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.83 E-value=0.0061 Score=60.85 Aligned_cols=149 Identities=18% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHHHHHHhHhc-----C----CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 124 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 124 ~~Q~~~i~~~l~-----g----~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
|+|.-.+-.++- | +.+++.-|=+-|||......++..+... ...+..+++++++++.|..+++.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 567766665551 2 3588888999999985544444444432 22378899999999999999999988
Q ss_pred hccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC--CcccccceeEeeccchhhhcCCcHHHHHHHHH
Q 013965 195 FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (433)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~ 272 (433)
+............ ...... ....|.....+..+..+... ...=.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~~------~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRKK------PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccchh------hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 7654221110000 000000 01122222222222222221 12223578999999998765433333333333
Q ss_pred hcCCCCcEEEEE
Q 013965 273 QIRPDRQTLYWS 284 (433)
Q Consensus 273 ~~~~~~~~l~~S 284 (433)
. +++.+++..|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 3 4566666654
No 238
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.014 Score=56.87 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=35.1
Q ss_pred ceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHh
Q 013965 247 VTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 247 ~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
.++||+|.+-++. +......+..+.....++.-++.++||...+....++.+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 4889999995542 222445566666666777788888888876665555554
No 239
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.82 E-value=0.0052 Score=65.15 Aligned_cols=151 Identities=17% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCC----------CCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEE
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQP----------FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTC 205 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~----------~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~ 205 (433)
|+++++.-.+|.|||.+-+...+...-... ........-.|||+|. ++..||.+++.+-.... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 567899999999999975554443321100 0001113458999996 78899999999876543 56665
Q ss_pred EECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC--------------Cc----cccc--ceeEeeccchhhhcCCcHH
Q 013965 206 IYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH--------------NT----NLRR--VTYLVLDEADRMLDMGFEP 265 (433)
Q Consensus 206 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------------~~----~l~~--~~~lVvDEah~~~~~~~~~ 265 (433)
..|=.....-.....-.+|||+||+..|..-+... .. .|-. +=-|++|||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 55532211111122236999999999986544221 00 1111 22489999997543 233
Q ss_pred HHHHHHHhcCCCCcEEEEEeccchHH
Q 013965 266 QIKKILSQIRPDRQTLYWSATWPKEV 291 (433)
Q Consensus 266 ~~~~i~~~~~~~~~~l~~SAT~~~~~ 291 (433)
...+.+..+ +....=.+|.|+-..+
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhh
Confidence 444444444 3445667888864433
No 240
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.01 Score=55.82 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=29.4
Q ss_pred CcHHHHHHHHhHhcC----CcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 122 PTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g----~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
+.|+|...|..+... +..++.||.|.|||..+.. +...+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 479999999887753 3588999999999986433 334444
No 241
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.79 E-value=0.0058 Score=63.27 Aligned_cols=72 Identities=24% Similarity=0.201 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
..+++-|.+|+-.. ..+++|.|..|||||.+ ++.-+.++.... ......+|+++.|+..|..+.+++.+...
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~v-l~~r~ayLl~~~---~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSV-LVARAGWLLARG---QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHH-HHHHHHHHHHhC---CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 36899999998643 35689999999999998 444444444321 11245799999999999999998877543
No 242
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.76 E-value=0.014 Score=65.75 Aligned_cols=65 Identities=25% Similarity=0.215 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
..+++.|.+|+..++.+ +-+++.+..|+|||.. +-.++..+... ....+..++.++||---+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 36899999999999975 5799999999999985 33333333211 111256789999996655443
No 243
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.71 E-value=0.00074 Score=56.95 Aligned_cols=124 Identities=22% Similarity=0.197 Sum_probs=52.7
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh
Q 013965 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL 219 (433)
Q Consensus 140 lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 219 (433)
|+.|+-|-|||.+.-+.+. .+... ...+++|.+|+.+-+....+.+..-....+++..... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a-~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAA-ALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCC-CSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccc
Confidence 5789999999986444332 22211 1357999999999888887766654443333320000 000000111
Q ss_pred hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 220 QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 220 ~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
.....|-+..|+.+...- ...+++|||||=.+. .+.+.+++. ....++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHh----hCCEEEEEeecc
Confidence 124567777775543321 235899999998653 345555543 334677788863
No 244
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.66 E-value=0.0046 Score=64.32 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+++-|.+|+.. ....++|.|..|||||.+ +..-+.++..+. .-+..++|+|+-|+..|.++.+++.++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 468999999875 346789999999999998 444444444321 1123469999999999999999998764
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.65 E-value=0.03 Score=58.33 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHh
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
++|.|+||+|||++ +--++..+.
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 45999999999997 444455543
No 246
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.022 Score=53.30 Aligned_cols=143 Identities=21% Similarity=0.181 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHhHhc----CC---cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 120 FEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~----g~---~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
..++|+|..+|..+.. ++ ..++.||.|.||+..+ ..+...+........ + .|+.. +.+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~~--~-----~c~~c-------~~~ 67 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDPA--A-----AQRTR-------QLI 67 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCCC--C-----cchHH-------HHH
Confidence 4578999999987663 33 5899999999999853 334444444321000 0 11110 111
Q ss_pred HHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHH
Q 013965 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS 272 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~ 272 (433)
. -+...++......-+.... .....|.|-..-.+.+.+..... ....+++||||||.|... -...+.|+++
T Consensus 68 ~-~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 68 A-AGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred h-cCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1 1112223222101000000 00012222222223333332222 346899999999998543 4556777777
Q ss_pred hcCCCCcEEEEEec
Q 013965 273 QIRPDRQTLYWSAT 286 (433)
Q Consensus 273 ~~~~~~~~l~~SAT 286 (433)
.-+++..+|+.|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 76667777776654
No 247
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.60 E-value=0.019 Score=56.91 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=27.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
..+++.||+|+|||.. +-++...+..+. .+..++++.. .++..+.
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~-----~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKN-----PNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhC-----CCCeEEEEEH-HHHHHHH
Confidence 4589999999999985 334444444321 1456666644 3454443
No 248
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.58 E-value=0.034 Score=46.67 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=30.6
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
...+++|+||||.|... ....+.+.++.-+.+..++++|...
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999987544 5667778888777777777766554
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.074 Score=50.04 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
.+.++++.|+||+|||.. +.++...+... +..|+++. ..+|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~-------g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDR-------GKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHC-------CCeEEEEE-HHHHHHHH
Confidence 357899999999999974 33444444432 55666654 34454444
No 250
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.48 E-value=0.073 Score=54.01 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=47.0
Q ss_pred cHHHHHHHHhH---hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 123 TPIQAQGWPMA---LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 123 ~~~Q~~~i~~~---l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.|.=.+=|..+ ++.+-.++.+|=|.|||.+..+.++ .+... .+.+++|++|...-+.++.+.+++...
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 44444444443 3456788899999999997544433 33321 167899999999999998888777654
No 251
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.47 E-value=0.031 Score=53.07 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=25.5
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
...++||+||+|.+... ....+..++...++...+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987432 3445666666665566655543
No 252
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.011 Score=55.47 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHHH
Q 013965 137 RDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~ 154 (433)
.++|+.+|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 479999999999998544
No 253
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.049 Score=51.70 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE-EEecC-HHHHHHHHHHHHHhccCCCceEEEEECCccCh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL-VLAPT-RELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l-il~Pt-r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 213 (433)
++.+++++|+|+|||+...-.+. .+..+ +.++. |-+-+ |.=+ .++++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~--------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGA---VEQFQGYADKLDVELI--------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccH---HHHHHHHhhcCCCCEE---------
Confidence 46788999999999986433332 22222 33444 33333 3211 2233333333222211
Q ss_pred HhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccch-HH
Q 013965 214 PQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPK-EV 291 (433)
Q Consensus 214 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~ 291 (433)
+..+|..+.+.+..-. ....+++|+||=+=+... ......+..+.....++.-++.+||+... ++
T Consensus 266 ------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 266 ------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred ------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 2235655555443211 124578899998876432 22344555566556665556677876543 44
Q ss_pred HHHHHHh
Q 013965 292 EHLARQY 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
...+..|
T Consensus 333 ~~i~~~f 339 (407)
T PRK12726 333 MTILPKL 339 (407)
T ss_pred HHHHHhc
Confidence 4444443
No 254
>PTZ00293 thymidine kinase; Provisional
Probab=96.44 E-value=0.033 Score=48.45 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
|+--++.||++||||.-.+- .+...... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~a-------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTYS-------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHHc-------CCceEEEEec
Confidence 55678899999999986333 33333221 5678888885
No 255
>PF13173 AAA_14: AAA domain
Probab=96.43 E-value=0.034 Score=44.62 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=25.8
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
.-.+|++||+|.+.+ +...+..+...- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 467899999998753 566777776644 45666654443
No 256
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.42 E-value=0.012 Score=51.20 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+.+.+|+||||.|-+ |-...+++.++......++.+..-+
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 36788999999998754 3555666666555455555444443
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.42 E-value=0.019 Score=56.43 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
..+++.||+|+|||.. +-++...+... +.+++++.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~-------~~~v~yi~~-~~f~~~~~~~l~~--------------~------- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES-------GGKILYVRS-ELFTEHLVSAIRS--------------G------- 191 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc-------CCCEEEeeH-HHHHHHHHHHHhc--------------c-------
Confidence 4589999999999974 33444444432 456777754 3343333222211 0
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhc-CCCCcEEEEEeccchHHHH
Q 013965 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI-RPDRQTLYWSATWPKEVEH 293 (433)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~ 293 (433)
..+.+... +.++++|++||+|.+.... ....+..++..+ ....++++.|-+.|.+...
T Consensus 192 ------------~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 192 ------------EMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ------------hHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 01111111 3457899999999876432 233444444433 2345665555555555443
No 258
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.41 E-value=0.011 Score=57.15 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=24.4
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHH
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~ 153 (433)
.......+..+..++++++.+|+|+|||..+
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3445556666778999999999999999854
No 259
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.38 E-value=0.03 Score=55.20 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=58.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
..+++.|++|+|||.. +-++...+... ..+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 3588999999999963 33444444321 11556777665 455555544433200
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhcCC-CCcEEEEEeccchHH
Q 013965 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP-DRQTLYWSATWPKEV 291 (433)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~ 291 (433)
+.+..+... +.++++||+||+|.+.... ....+..++..+.. ..|+|+.|-..|...
T Consensus 195 --------------~~~~~~~~~----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKNE----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHHH----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111122211 3468899999999765322 33445555544433 345555444444333
No 260
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.36 E-value=0.026 Score=59.04 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=52.2
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
+++-|.+++.. ...+++|.|..|||||.+ ++--+.++..+. .-+..++|+|+.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~---~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNC---GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899999865 356899999999999998 444444444321 11245799999999999999999987553
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.015 Score=52.58 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=33.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
++.++++.|++|+|||.. +.++...+... |..+++ +++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~-------g~sv~f-~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLKA-------GISVLF-ITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEE-EEHHHHHHHHHHHHhc
Confidence 678999999999999985 33333444421 445444 5666777766654443
No 262
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.34 E-value=0.017 Score=56.38 Aligned_cols=145 Identities=12% Similarity=0.218 Sum_probs=81.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH-HHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
-.++.+..|||||.+..+-++..+... .++.+++|+-|+.. |...+...+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 367889999999998887777777653 12678999999887 66666677766544444321111111100 11
Q ss_pred HHhhc-CCcEEEeCh-HHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC--CCcEEEEEeccchHHH
Q 013965 217 RDLQK-GVEIVIATP-GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP--DRQTLYWSATWPKEVE 292 (433)
Q Consensus 217 ~~~~~-~~~Iiv~Tp-~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~ 292 (433)
.+.. +..|++..- +.... +. ....+.++.+|||..+... .+..++..++. ....+++|.+++....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1112 445666543 11111 11 1233689999999987433 44455444542 2224788888765333
Q ss_pred HHHHHhc
Q 013965 293 HLARQYL 299 (433)
Q Consensus 293 ~~~~~~~ 299 (433)
-+.+.+.
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3444443
No 263
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.33 E-value=0.091 Score=51.38 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=24.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
..+++.|++|+|||.. +.++...+... ..+..++++..
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~-----~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILEN-----NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCcEEEEEH
Confidence 3588999999999985 34444444432 11456777743
No 264
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.32 E-value=0.027 Score=57.79 Aligned_cols=149 Identities=20% Similarity=0.212 Sum_probs=85.3
Q ss_pred HHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHH
Q 013965 113 EISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQ 190 (433)
Q Consensus 113 ~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~ 190 (433)
.+.....+.+..-|.+.+..++.. +-+++.|.-|=|||.+.-+.+....... ....++|++|+.+-+....+
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~------~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA------GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc------CCceEEEeCCCHHHHHHHHH
Confidence 344444444444555555556653 4688899999999998766653222221 04579999999999888887
Q ss_pred HHHHhccCCCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHH
Q 013965 191 ESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKK 269 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~ 269 (433)
.+.+-....+++-.+...... ..... .....|=+-+|.... ..-++||||||=.+. .+.+.+
T Consensus 280 fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHH
Confidence 776654444433221111100 00000 012234455553221 116899999998653 455666
Q ss_pred HHHhcCCCCcEEEEEeccc
Q 013965 270 ILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 270 i~~~~~~~~~~l~~SAT~~ 288 (433)
++... +.++||.|+.
T Consensus 343 l~~~~----~rv~~sTTIh 357 (758)
T COG1444 343 LLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHhhc----CceEEEeeec
Confidence 65543 4688888863
No 265
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.12 Score=50.20 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=81.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
++.+.++||||+|||+.....+-..+... +.....++.+.+.-. -..+.+..++...++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~---------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS---------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcch--hHHHHHHHHHHHcCCceec----------
Confidence 56789999999999995432222222211 012234555555222 1122233333333333222
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccc-hHHHH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWP-KEVEH 293 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~-~~~~~ 293 (433)
+.++..+...+.. +.+.+.+++|.+=+... ......+..+.....+...++.+|||.. ..+.+
T Consensus 254 -----------v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 254 -----------IKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred -----------CCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 2233333333322 55678899998743211 1122334333222334556788999974 44555
Q ss_pred HHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcc
Q 013965 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 355 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~ 355 (433)
.+..|-..++. ...+...++..+.-.++.++... +-++..++...+
T Consensus 319 ~~~~f~~~~~~--------------~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 319 VISAYQGHGIH--------------GCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHhcCCCCC--------------EEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 55555322111 11122234444555566666543 345555555443
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.31 E-value=0.027 Score=48.09 Aligned_cols=146 Identities=18% Similarity=0.096 Sum_probs=79.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
....+++..++|.|||.+++--++..+.. |.+|+++.=.+--.. ..+...+....++.......+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC
Confidence 45689999999999999877666666554 777888764332110 11111111111222222111100000
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHH
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
...+--.......+..... .+.-..+++||+||+-..++.++ ...+..++..-++..-+|+..-..|+++.
T Consensus 91 ------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 91 ------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0000000011111222111 11235689999999998888774 55777778777677777777677788777
Q ss_pred HHHHH
Q 013965 293 HLARQ 297 (433)
Q Consensus 293 ~~~~~ 297 (433)
+.+..
T Consensus 164 e~ADl 168 (191)
T PRK05986 164 EAADL 168 (191)
T ss_pred HhCch
Confidence 66543
No 267
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.038 Score=58.42 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=28.0
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.+++++||||+|+|... -...+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 56899999999998654 3346667777766666666654
No 268
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.26 E-value=0.025 Score=65.37 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHH---HHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 120 FEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYL---LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
..+++.|.+|+..++.+ +-+++++..|+|||.... -++...+.. .+..++.++||-.-+...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 46899999999998865 557888999999998531 223333322 167899999996555444
No 269
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.26 E-value=0.049 Score=52.87 Aligned_cols=53 Identities=13% Similarity=0.274 Sum_probs=28.9
Q ss_pred cceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHh
Q 013965 246 RVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 246 ~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
.+++||+|=+-++.. ......+.++.....++..++.++||...+....++.|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 356666666654322 12334555555555566666677777655555455444
No 270
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.057 Score=45.87 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=52.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
++=.++.+|+.||||.. +|-.+...... +.++++..|... . ..+...+.-.-|..
T Consensus 4 g~l~~i~gpM~SGKT~e-Ll~r~~~~~~~-------g~~v~vfkp~iD----------~---R~~~~~V~Sr~G~~---- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE-LLRRARRYKEA-------GMKVLVFKPAID----------T---RYGVGKVSSRIGLS---- 58 (201)
T ss_pred EEEEEEEccCcCcchHH-HHHHHHHHHHc-------CCeEEEEecccc----------c---ccccceeeeccCCc----
Confidence 44578999999999996 33333333222 677888888521 1 00111111111111
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
...++|-.+..+.+.+......+. +++|.+|||+-+
T Consensus 59 ------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 59 ------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred ------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 134666677777777776433222 899999999953
No 271
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.056 Score=55.69 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=25.5
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.+++++||||+|+|....+ ..+.++++.-+++..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4589999999998865433 34556666655555555444
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.23 E-value=0.029 Score=50.06 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=26.2
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCc-EEEEEeccch
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ-TLYWSATWPK 289 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~-~l~~SAT~~~ 289 (433)
..++||+||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4678999999986432 33445555554443333 5677777543
No 273
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.22 E-value=0.074 Score=44.17 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=41.2
Q ss_pred cccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHHHHHH
Q 013965 244 LRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 296 (433)
...+++||+||+-..+..++ ...+..+++.-++..-+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45689999999997766663 557777888777777888888888888776654
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.20 E-value=0.073 Score=48.78 Aligned_cols=55 Identities=25% Similarity=0.391 Sum_probs=35.9
Q ss_pred ccceeEeeccchhhhc-CCcHHHHHHHHHhcC------CCCcEEEEEeccchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRMLD-MGFEPQIKKILSQIR------PDRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~------~~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
..+++||+|=+-++.. .....++.++..... ++-.++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 4578999998876532 223445666665554 677788999997665555555544
No 275
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.20 E-value=0.028 Score=58.67 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc-ccccC
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARG 407 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~~G 407 (433)
.+..++.....+.+++|.++|+.-|.+.++.+++ .++++..+||+++..+|.++++...+|+..|+|+|. .+...
T Consensus 299 a~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 299 AALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred HHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 3344444555677999999999999988887764 368899999999999999999999999999999995 44445
Q ss_pred CCc--cCeEEE
Q 013965 408 LGN--CACVII 416 (433)
Q Consensus 408 ldi--~~~Vi~ 416 (433)
+.+ +.+||+
T Consensus 379 v~~~~l~lvVI 389 (681)
T PRK10917 379 VEFHNLGLVII 389 (681)
T ss_pred chhcccceEEE
Confidence 555 666554
No 276
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.057 Score=55.26 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=25.0
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~ 283 (433)
.+++++||||+|+|.... ...+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999886543 34555566655455555544
No 277
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.16 E-value=0.022 Score=53.20 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=43.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHhHh-cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 112 QEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~~l-~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
+.+.+.|. +++.|.+.+..+. .+.+++++|+||||||+. +-+++..+...+ .+.+++++-.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 34445554 4677887776654 567999999999999984 444445443211 144788888777764
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.16 E-value=0.026 Score=53.12 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=26.5
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..++||+||+|.+........+..+++..+.+.++++.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998733334556666677766666666544
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=96.14 E-value=0.057 Score=49.14 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.9
Q ss_pred HhcCCcEEEEccCCCchhHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~ 153 (433)
+..+.++++.||+|+|||..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456889999999999999743
No 280
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.12 Score=49.82 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=31.8
Q ss_pred ccceeEeeccchhhh-cCCcHHHHHHHHHhcC---CCCcEEEEEeccch-HHHHHHHHh
Q 013965 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIR---PDRQTLYWSATWPK-EVEHLARQY 298 (433)
Q Consensus 245 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~-~~~~~~~~~ 298 (433)
..+++|+||=+-+.. +..-...+.+++.... +.-.++.+|||... ++.+.++.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 457899999766542 2223334455554432 33467888999866 555555554
No 281
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.13 E-value=0.034 Score=62.01 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=76.0
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
+|+-|.++|.. .+++++|.|..|||||.+..--++..+... .+--++|+|+=|+..|..+.+++.+..... +
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 58999999973 688999999999999998555555555432 112359999999999999888887643211 0
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHHHH-HHHcCCcccc-cceeEeeccchh
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID-MLESHNTNLR-RVTYLVLDEADR 257 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~-~l~~~~~~l~-~~~~lVvDEah~ 257 (433)
. .........+.+..-...-|+|...+.. +++.....+. +-.+=|.||...
T Consensus 74 ~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0001111122233335677899888864 3443221110 113456888874
No 282
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.12 E-value=0.055 Score=49.41 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHHH
Q 013965 137 RDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~ 154 (433)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999998643
No 283
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.12 E-value=0.028 Score=55.34 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
++.+.++||||+|||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4568899999999999643
No 284
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.12 E-value=0.036 Score=50.87 Aligned_cols=53 Identities=26% Similarity=0.169 Sum_probs=31.7
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
..|..+++.|++|+|||...+..+...+.. .+..++++.- .+-..++...+..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc-ccCHHHHHHHHHH
Confidence 457889999999999998533333333222 1556777764 2334445544443
No 285
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.033 Score=54.66 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.0
Q ss_pred cEEEEccCCCchhHHHHH
Q 013965 138 DLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l 155 (433)
.+++.||.|+|||.++.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999996443
No 286
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.11 E-value=0.019 Score=50.09 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
++++.||+|+|||+.
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999984
No 287
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.10 E-value=0.02 Score=60.20 Aligned_cols=69 Identities=17% Similarity=0.046 Sum_probs=59.2
Q ss_pred cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 221 KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 221 ~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
....|+++||..|..-+-.+.+++..++.|||||||++....-...+.+++..-.+..-+.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 457899999999987667778889999999999999998777777788888888888889999999754
No 288
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.09 E-value=0.1 Score=41.67 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.5
Q ss_pred EEEEccCCCchhHH
Q 013965 139 LIGIAETGSGKTLA 152 (433)
Q Consensus 139 ~lv~a~TGsGKT~~ 152 (433)
+++.||.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58899999999984
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.07 E-value=0.086 Score=47.07 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=33.8
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..|..+++.+++|+|||+..+.. +.....+ +.++++++. .+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~-~~~~~~~-------g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRL-AYGFLQN-------GYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHH-HHHHHhC-------CCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 35778999999999999853333 3333221 566788884 344455555555543
No 290
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.011 Score=54.54 Aligned_cols=62 Identities=27% Similarity=0.186 Sum_probs=45.6
Q ss_pred CCCCCcHHHHHHHHhHhcCC-cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 118 GFFEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~g~-~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
.|...++-|...+..+...+ |+++++.||||||+ ++-++...... .-+++++--|.||-.+.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~~-------~eRvItiEDtaELql~~ 216 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFIDS-------DERVITIEDTAELQLAH 216 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCCC-------cccEEEEeehhhhccCC
Confidence 35678899999998888765 99999999999998 44333332211 33899999998886544
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.05 E-value=0.037 Score=46.53 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=40.4
Q ss_pred ccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHHHHHH
Q 013965 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 296 (433)
..+++||+||+-..++.++ ...+..++..-++...+|+..-..|+++.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5689999999998877774 456777787777777888777778887776654
No 292
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.042 Score=55.51 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=28.9
Q ss_pred cccceeEeeccchhhhcCC-cHHHHHHHHHhcCC-CCcEEEEEeccchHH
Q 013965 244 LRRVTYLVLDEADRMLDMG-FEPQIKKILSQIRP-DRQTLYWSATWPKEV 291 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~ 291 (433)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|.++
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4458999999999875443 23444455554433 466666554444443
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.054 Score=54.29 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=27.4
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.+++++||||+|+|....+ ..+.+.++..++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4689999999998865433 45666777766666666544
No 294
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.064 Score=53.47 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.9
Q ss_pred CcEEEEccCCCchhHHHHH
Q 013965 137 RDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l 155 (433)
+.++++||.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3699999999999997544
No 295
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.035 Score=54.92 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=26.0
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|++....+ ..+.+.++..++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 45789999999998765433 34556666555555555443
No 296
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.99 E-value=0.05 Score=53.85 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCHH-HHHHHHHCCCCCCcH----HHHHHHHhHh--cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 105 GFPDY-VMQEISKAGFFEPTP----IQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 105 ~l~~~-l~~~l~~~g~~~~~~----~Q~~~i~~~l--~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+..++ +...|.++.-.+++. +|.+-=..+. .++-++|+|..|||||.+++--+...+.... ..-.+..|||
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R--~~l~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR--GPLQAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc--cccccCceEE
Confidence 34433 445555543333332 3333333333 3567999999999999985543333332221 1111334999
Q ss_pred EecCHHHHHHHHHHHHHhccC
Q 013965 178 LAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~ 198 (433)
+.|.+.++.-+...+-.++..
T Consensus 266 l~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EcCcHHHHHHHHHhchhhccC
Confidence 999999999999988888754
No 297
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.99 E-value=0.041 Score=58.11 Aligned_cols=72 Identities=24% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
..++|-|.+++.. ....++|.|..|||||.+ ++--+.++...... ...++|+++-|+..|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3579999999975 346799999999999998 44444444432111 124699999999999999999988654
No 298
>PLN03025 replication factor C subunit; Provisional
Probab=95.96 E-value=0.093 Score=49.48 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.2
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
...+++|+||+|.|... -...+.++++..+....++ ++++
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeC
Confidence 35789999999987543 3445566666544445444 4444
No 299
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.064 Score=54.42 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.4
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEe
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 285 (433)
..+++++||||+|+|....+ ..+.+.++.-+.+..+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 35689999999999865534 345556665555666665553
No 300
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.95 E-value=0.084 Score=47.42 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=38.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.|..+++.|++|+|||+-.+-.+...+.. +.++++++ +.+-..++.+.+..++-
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 46789999999999998655445544432 56788887 45677777777776653
No 301
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.94 E-value=0.038 Score=48.92 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=59.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 217 (433)
.+++.||+|+|||-. +-++...+.... .+.+++++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~~-~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSAE-EFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEHH-HHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecHH-HHHHHHHHHHHc-----------------------
Confidence 489999999999983 444444444321 15567777542 333333222222
Q ss_pred HhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC-cHHHHHHHHHhcC-CCCcEEEEEeccchHH
Q 013965 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKILSQIR-PDRQTLYWSATWPKEV 291 (433)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~ 291 (433)
.....+.+. +..+++|+||++|.+.... +...+..++..+. .+.++|+.|...|.+.
T Consensus 86 ----------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011222222 4568999999999876542 3445555555443 4566666666666543
No 302
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.89 E-value=0.13 Score=45.84 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|..+++.+++|+|||......+...+.. +..++++.- .+...++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 46789999999999998544333333322 445777764 344555555555443
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.13 Score=49.38 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=24.4
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.+.+++|+||+|.+....+ ..+.+.++..++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4578999999998865323 23555555544555555543
No 304
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.87 E-value=0.15 Score=50.34 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=24.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
..+++.||+|+|||.. +-++...+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhC-----CCCeEEEEEH
Confidence 3589999999999985 334444444321 1456777754
No 305
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.045 Score=57.42 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=25.2
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~ 283 (433)
.+.+++||||||+|... -...+.++++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE
Confidence 46889999999988543 334556666665555555554
No 306
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.83 E-value=0.069 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=18.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.++++.||+|+|||.. +-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 6799999999999986 444445443
No 307
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.1 Score=48.89 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.3
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
-...+++|+|+||+|... -...+.|+++.-+++..+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356899999999998654 455677777776666655555543
No 308
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.12 Score=46.09 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHCCCCC----------CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 105 GFPDYVMQEISKAGFFE----------PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 105 ~l~~~l~~~l~~~g~~~----------~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
++++.+-+.-.+.||.. ++|. .+...-+..|.-++|.|++|+|||+-.+-.+...+.. |.+
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~ 94 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRT 94 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCe
Confidence 34444444444566654 3442 2223334457789999999999998644444444332 556
Q ss_pred EEEEecCHHHHHHHHHHHHHhc
Q 013965 175 VLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
++|++- .+-..|+.+++..++
T Consensus 95 vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 95 GVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred EEEEEE-eCCHHHHHHHHHHcC
Confidence 777754 344677777777764
No 309
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.80 E-value=0.061 Score=54.33 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=78.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC--CceEEEEECCccCh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS--KIKSTCIYGGVPKG 213 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~--~~~~~~~~g~~~~~ 213 (433)
.+-.++..|=-.|||.... +++..+...- .|.++++++|.+..+..+.+++....... +-.+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI- 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE-
Confidence 4668899999999999644 5555444210 18899999999999999999988754421 111212222 110
Q ss_pred HhHHHhhcC--CcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 214 PQVRDLQKG--VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 214 ~~~~~~~~~--~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
.-...++ ..|.+++. -..+...=..++++|||||+-+.+.-+. .+.-.+. ..+.++|++|.|
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~-~ilp~l~--~~n~k~I~ISS~ 389 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQ-TIMGFLN--QTNCKIIFVSST 389 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHH-HHHHHHh--ccCccEEEEecC
Confidence 0011223 25566531 1112222356999999999977654222 2222222 238889999987
No 310
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.80 E-value=0.15 Score=42.90 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=65.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 218 (433)
+.+--..|-|||++++=-++..+-+ |.+|+++.=.+-- ....+...+..-.++.+...-.+.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~--------G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~ 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH--------GMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEE 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT--------T--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC--------CCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcH
Confidence 4445568999999877777766554 7789998765541 11122222211112332221111100000000
Q ss_pred hhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHHHHHH
Q 013965 219 LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 219 ~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 296 (433)
.+ .......++.... ...-..+++||+||+-..++.++ ...+..++..-++..-+|+.--.+|+++.+.+.
T Consensus 76 ----~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 ----ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp ----HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ----HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 0011111222222 12235699999999998888775 456777788777777788777777877776654
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.079 Score=49.96 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=27.0
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEe
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 285 (433)
....++|+||||.|... -...+.+.++.-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56899999999987652 45566666665555555555443
No 312
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.75 E-value=0.047 Score=56.57 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccc-cccCC
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV-AARGL 408 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~-~~~Gl 408 (433)
++.++.....+.+++|.++|+.-|.++++.+++ .++++..+||+++..+|..+++...+|+..|+|+|.. +...+
T Consensus 274 ~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~ 353 (630)
T TIGR00643 274 ALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV 353 (630)
T ss_pred HHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc
Confidence 444555555677999999999999998887764 3789999999999999999999999999999999954 33345
Q ss_pred Cc--cCeEEE
Q 013965 409 GN--CACVII 416 (433)
Q Consensus 409 di--~~~Vi~ 416 (433)
.+ +.+||+
T Consensus 354 ~~~~l~lvVI 363 (630)
T TIGR00643 354 EFKRLALVII 363 (630)
T ss_pred cccccceEEE
Confidence 55 665554
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.75 E-value=0.07 Score=47.52 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=69.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC-----ceEEEEECC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK-----IKSTCIYGG 209 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-----~~~~~~~g~ 209 (433)
.|..+++.+++|+|||+-.+-.+...+... +-++++++- .+-..++.+.++.++-... -....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 467899999999999986554455554430 335777774 4556777777776642210 001111100
Q ss_pred ccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC----cHHHHHHHHHhcCCCCcEEEEEe
Q 013965 210 VPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG----FEPQIKKILSQIRPDRQTLYWSA 285 (433)
Q Consensus 210 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~----~~~~~~~i~~~~~~~~~~l~~SA 285 (433)
.... ... -..++.+...+..... -.+.+.+|+|-...+.... +...+..+...++....+.++++
T Consensus 90 ~~~~--------~~~--~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERI--------GWS--PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGS--------T-T--SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccc--------ccc--ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 0000 000 1233344433332111 1223899999999772222 45556666666655556666766
Q ss_pred cc
Q 013965 286 TW 287 (433)
Q Consensus 286 T~ 287 (433)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.72 E-value=0.49 Score=40.02 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=31.8
Q ss_pred ccceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHh
Q 013965 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 245 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
...+++|+|...... +......+..+.....++.-++.++|.-+.+..+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 357889999988642 222344444444444566667777776555554555444
No 315
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.71 E-value=0.045 Score=44.65 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=38.8
Q ss_pred EcCCCCHHHHHHHHHHHhcCC-CCEEEEccccccCCCc----cCeEEEEcCCCc
Q 013965 374 IHGDKSQAERDWVLSEFKAGK-SPIMTATDVAARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 374 lh~~~~~~~r~~~~~~f~~g~-~~iLvaT~~~~~Gldi----~~~Vi~~d~p~~ 422 (433)
+.-+....+...++++|++.. ..||++|.-+++|+|+ +++||+..+|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 333445556788999998754 3799999889999999 789999999963
No 316
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.69 E-value=0.041 Score=51.53 Aligned_cols=67 Identities=25% Similarity=0.289 Sum_probs=44.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhH-hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 111 MQEISKAGFFEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~~-l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
++.+.+.|+ +++.|.+.+..+ ..+++++++|+||||||.. +-.++..+...+ ...+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 445555565 457788888654 4578999999999999974 444444432111 145688888887763
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.68 E-value=0.11 Score=51.38 Aligned_cols=92 Identities=22% Similarity=0.313 Sum_probs=53.5
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.+++|+|||+..+..+. .+..+ +.+++|+.- .+-..|+...+.+++.... + ..+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~-~~a~~-------g~~vlYvs~-Ees~~qi~~ra~rlg~~~~-~-l~~~~e----- 142 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAA-RLAAA-------GGKVLYVSG-EESASQIKLRAERLGLPSD-N-LYLLAE----- 142 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HHHhc-------CCeEEEEEc-cccHHHHHHHHHHcCCChh-c-EEEeCC-----
Confidence 356789999999999985333332 32221 557888875 4566777777766543211 0 111100
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
...+.+...+.. .+.++||+|+++.+..
T Consensus 143 -------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122344444432 3478999999997654
No 318
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.1 Score=49.28 Aligned_cols=42 Identities=21% Similarity=0.106 Sum_probs=28.1
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++|||+||+|... -...+.|.++.-+++..+|+.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECC
Confidence 456899999999998543 445666667665555555555544
No 319
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.64 E-value=0.036 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=20.3
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.+..+++++|||||||+. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 466899999999999985 444555554
No 320
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.096 Score=49.51 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=28.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++|||+||+|... -...+.|+++.-+++..+++.|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456899999999998654 455677777765555555555543
No 321
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.13 Score=52.76 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=26.4
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|... -...+.+.++..+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 356799999999987543 2335666666655566666544
No 322
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.56 E-value=0.15 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=18.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.++++.||+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999986 444444443
No 323
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.56 E-value=0.096 Score=54.64 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccc
Q 013965 328 SQKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (433)
Q Consensus 328 ~~k~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 405 (433)
..|....+..+.. ...+.++||.++++.-+.++.+.|++. +..+..+||+++..+|.+.+.+..+|+.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 3444444443332 334678999999999999999999763 77899999999999999999999999999999996433
Q ss_pred cCCCc--cCeEEEEcC
Q 013965 406 RGLGN--CACVIIVLC 419 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~ 419 (433)
. +.+ +..||+-+.
T Consensus 253 ~-~p~~~l~liVvDEe 267 (679)
T PRK05580 253 F-LPFKNLGLIIVDEE 267 (679)
T ss_pred c-ccccCCCEEEEECC
Confidence 2 333 666666553
No 324
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.2 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.6
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|....+ ..+.+.++..+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35688999999998765432 34556666655566566554
No 325
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.19 Score=51.48 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=23.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+.++|||||+|.|.... ...+.+.++..++.. ++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4568899999999876432 233444455444443 3334443
No 326
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.16 Score=51.82 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=26.4
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|... -...+.+.++..++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 456899999999987643 2345666666655555555444
No 327
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.15 Score=47.97 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=25.7
Q ss_pred cHHHHHHHHhHhc--C---CcEEEEccCCCchhHHHHH
Q 013965 123 TPIQAQGWPMALK--G---RDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 123 ~~~Q~~~i~~~l~--g---~~~lv~a~TGsGKT~~~~l 155 (433)
+|+|+..|..+.. + ..+++.||.|+|||..+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 6888888887764 3 3589999999999986443
No 328
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.51 E-value=0.2 Score=42.30 Aligned_cols=142 Identities=20% Similarity=0.150 Sum_probs=74.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH-HHHHHHhccCCCceEEEEECCccChHhHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGASSKIKSTCIYGGVPKGPQVR 217 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 217 (433)
++|.-..|-|||++++--++..+.+ |.+++|+.=.+--...= ...+.++ ...+....+-.+..-..+.+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh--------G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH--------GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC--------CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCc
Confidence 5666778889999977777776654 77888876332211111 1112222 11122222111111111100
Q ss_pred HhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHHHHH
Q 013965 218 DLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLA 295 (433)
Q Consensus 218 ~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 295 (433)
+ .++ ............ .+.-.++++||+||.--.+..++ ...+..++..-+++..+|+..-..|+++.+.+
T Consensus 101 ~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 101 E----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred H----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 0 022 122222211111 11123589999999998777774 44666777766667777766667788877766
Q ss_pred HH
Q 013965 296 RQ 297 (433)
Q Consensus 296 ~~ 297 (433)
..
T Consensus 174 Dl 175 (198)
T COG2109 174 DL 175 (198)
T ss_pred HH
Confidence 53
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.51 E-value=0.068 Score=49.73 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=42.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhHh-cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~~l-~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
++.+.+.|. +++.|.+.+..+. .+++++++|+||||||+. +-.++..+...+ ...+++++-.+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 444545554 4556666665544 567999999999999984 444444443211 145788888887774
No 330
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.21 Score=50.80 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=26.9
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|... -...+.+.++..+....+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 356899999999988654 3335566666655555555544
No 331
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.47 E-value=0.13 Score=47.01 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHhHh----cCC-cEEEEccCCCchhHH
Q 013965 121 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLA 152 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~-~~lv~a~TGsGKT~~ 152 (433)
.+++.+.+++..+. .+. .+++.||+|+|||+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 34666666776543 233 588999999999985
No 332
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.14 Score=52.20 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=26.0
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.+.+++||||+|+|.... ...+.++++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 457899999999876543 345666666655555555543
No 333
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.46 E-value=0.13 Score=50.45 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
..+++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37999999999999853
No 334
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.45 E-value=0.09 Score=54.30 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-C-CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccc
Q 013965 327 ESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-G-WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (433)
Q Consensus 327 ~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~ 403 (433)
.+.|.+..++++.... .++++||.++.+..+.++.+.|+.. + ..+..+|++++..+|.+.+.+..+|+.+|+|.|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 3467777777776643 4678999999999999999999864 3 56899999999999999999999999999999965
Q ss_pred cc
Q 013965 404 AA 405 (433)
Q Consensus 404 ~~ 405 (433)
+.
T Consensus 250 Av 251 (665)
T PRK14873 250 AV 251 (665)
T ss_pred eE
Confidence 43
No 335
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.44 E-value=0.16 Score=46.63 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=57.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHh-cCCCCCCC---CCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEEEEECCcc
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVN-AQPFLAPG---DGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTCIYGGVP 211 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~-~~~~~~~~---~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~ 211 (433)
.+++++|+|+-|||... .+.. .++..... .-|.+++-+|...-....+..+-. ++.... ...
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~--------~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR--------PRD 128 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC--------CCC
Confidence 58999999999999842 2222 12211111 236777777776655555544433 332211 000
Q ss_pred ChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHH--HHHHHHHhcCCCCc
Q 013965 212 KGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP--QIKKILSQIRPDRQ 279 (433)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~--~~~~i~~~~~~~~~ 279 (433)
..... -.+..+++.. -.+++|||||+|.++...... .+...++.+.+..+
T Consensus 129 ~~~~~-------------~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 129 RVAKL-------------EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred CHHHH-------------HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 00000 0011233332 347899999999987655332 33344455544433
No 336
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.41 E-value=0.17 Score=48.44 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=27.5
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
-....++||||+|.|... -...+.+.++..++...+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999987432 344566666665555556655544
No 337
>PRK10436 hypothetical protein; Provisional
Probab=95.40 E-value=0.06 Score=53.08 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=27.4
Q ss_pred cHHHHHHHHhHhc--CCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 123 ~~~Q~~~i~~~l~--g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.+.|.+.+..+.. +.-+++++|||||||+. +..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 4556666655543 44689999999999996 455666654
No 338
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.37 E-value=0.034 Score=56.39 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH-HHHHHhcc
Q 013965 121 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ-QESTKFGA 197 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~-~~~~~~~~ 197 (433)
..+|+|.+.+.++-.. +.++++.++-+|||.+ ++.++-+...+. ...+|++.||.++|..+. .++..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4589999999888764 6799999999999996 444444433331 345899999999999886 44554433
Q ss_pred CCCceEEEEEC---CccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 198 SSKIKSTCIYG---GVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 198 ~~~~~~~~~~g---~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
....-...+.. .............+..+.++.... ...+.-..++++++||+|.+..
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 22110011111 001111111112244555554211 1112234578999999998743
No 339
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.36 E-value=0.058 Score=51.56 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=27.5
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 184 (433)
.+..+++++|||||||+. +-.++.++.... ...+++.+-...|+
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~-----~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETY-----PDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcC-----CCceEEEEecCchh
Confidence 345689999999999985 555666665321 13355655444343
No 340
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.36 E-value=0.056 Score=50.23 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..+|+.+|.|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 3699999999999984
No 341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.35 E-value=0.12 Score=54.00 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=24.2
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchH
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKE 290 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 290 (433)
+..++||||+|++... ....++..+ .+.++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4678999999986432 222233323 345678888875443
No 342
>PHA00729 NTP-binding motif containing protein
Probab=95.31 E-value=0.15 Score=44.82 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=38.4
Q ss_pred CcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcC-CcH----HHHHHHHHhcCCCCcEEEEEeccchHHHHHHHH
Q 013965 223 VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFE----PQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (433)
Q Consensus 223 ~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~-~~~----~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 297 (433)
...++.+.+.|...+........+++++|+||+-.-+.. .|. ..+..+...++...+++.+...-+.++...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 345566666666655432112234678999994311111 011 122233333444556677776666666666655
No 343
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.19 Score=48.86 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=23.9
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++||||+|+|....+ ..+.+.++..++...+| +.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~I-l~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFI-FATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEE-EEeC
Confidence 46678999999999864322 23444444443444444 4444
No 344
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.18 Score=47.25 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=29.3
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++|||+||+|... -...+.|.++.-+++..+|+.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456899999999998643 455677777776666656655544
No 345
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.25 E-value=0.23 Score=47.26 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=27.1
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.....++||||||.|... -...+.+.++..+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 356889999999987543 3445667777655555555555
No 346
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.25 Score=49.75 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=26.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|... -...+.+.++..+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999997654 3345666666655556565544
No 347
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.24 E-value=0.053 Score=52.91 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=31.7
Q ss_pred cHHHHHHHHhHhcCC--cEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 123 TPIQAQGWPMALKGR--DLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~--~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
.+.|.+.+..+++.. =+++.||||||||+. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 678888887777643 488889999999997 7777777765
No 348
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.21 E-value=0.051 Score=44.42 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCC---CEEEEccc--cccCCCc----cCeEEEEcCCCc
Q 013965 381 AERDWVLSEFKAGKS---PIMTATDV--AARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 381 ~~r~~~~~~f~~g~~---~iLvaT~~--~~~Gldi----~~~Vi~~d~p~~ 422 (433)
.+...++++|++... .||+++.- +++|||+ +++||++.+|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 345778888887543 69999877 9999999 689999999963
No 349
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.18 E-value=0.15 Score=49.42 Aligned_cols=80 Identities=16% Similarity=0.053 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 109 YVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 109 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
.+++.+++. +..+...|.++.-..-.|.- .+.+=.|||||...+.-+ .++.. .....++++.+=|+.|+.++
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~-----knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHS-----KNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhc-----CCCCceEEEEeehHHHHHHH
Confidence 445555432 33445677776655445554 667889999998533322 23322 22377899999999999999
Q ss_pred HHHHHHhc
Q 013965 189 QQESTKFG 196 (433)
Q Consensus 189 ~~~~~~~~ 196 (433)
...+.+|+
T Consensus 223 r~lv~~F~ 230 (660)
T COG3972 223 RTLVPEFF 230 (660)
T ss_pred HHHHHHHH
Confidence 88887764
No 350
>CHL00181 cbbX CbbX; Provisional
Probab=95.17 E-value=0.16 Score=47.04 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
+.++++.||+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998644
No 351
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.16 E-value=0.11 Score=55.86 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=64.0
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc-ccccCCCc-
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLGN- 410 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~~Gldi- 410 (433)
++.....+.+++|.++|+.-|.+.++.+++ .++.+..++|..+..++.++++.+++|+.+|+|+|. .+...+.+
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 344444567999999999999999988765 356788899999999999999999999999999995 44445555
Q ss_pred -cCeEEE
Q 013965 411 -CACVII 416 (433)
Q Consensus 411 -~~~Vi~ 416 (433)
+.++|+
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 666554
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.16 E-value=0.39 Score=45.09 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=34.1
Q ss_pred ccceeEeeccchhhhcC-CcHHHHHHHHHhc------CCCCcEEEEEeccchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRMLDM-GFEPQIKKILSQI------RPDRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~------~~~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
.++++||+|=+-++... .....+.++...+ .++..++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 55899999999875422 2334555554432 3455678899997665444455553
No 353
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.35 Score=49.22 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+..++||||+|+|....+. .+.+.++..+... ++++.+|
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt 157 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATT 157 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeC
Confidence 456899999999987544222 4444454433333 3333444
No 354
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.032 Score=52.97 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=24.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.|+++.+|||||||+. .--|..+.. -|.+|+=|-|
T Consensus 227 SNvLllGPtGsGKTll--aqTLAr~ld--------VPfaIcDcTt 261 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL--AQTLARVLD--------VPFAICDCTT 261 (564)
T ss_pred ccEEEECCCCCchhHH--HHHHHHHhC--------CCeEEecccc
Confidence 5799999999999984 334555554 4556665554
No 355
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.18 Score=51.52 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=27.2
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|+|.... ...+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4568999999999886542 335556666666666666654
No 356
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.10 E-value=0.07 Score=50.33 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=29.9
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
+..+.+++++|+||||||+. +-+++..+.. ..+++.+--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34578999999999999984 4444444322 44677776666654
No 357
>PRK06620 hypothetical protein; Validated
Probab=95.09 E-value=0.054 Score=47.76 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 358
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.29 Score=47.08 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=39.0
Q ss_pred cceeEeeccchhhhcC-CcHHHHHHHHHhcCC-CCcEEEEEeccchHHH---HHHHHhcCCCeEEEeCCC
Q 013965 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQIRP-DRQTLYWSATWPKEVE---HLARQYLYNPYKVIIGSP 310 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~ 310 (433)
+++++++|.++.+... .....+-.++..+.. +.|+++.|..+|.+.. ...+.-+.....+.+...
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC
Confidence 6899999999987655 245555556655544 3477777767776654 223333334444444443
No 359
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.2 Score=49.69 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHHHH
Q 013965 138 DLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l 155 (433)
.+++.||+|+|||+.+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986443
No 360
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.097 Score=54.13 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=70.2
Q ss_pred eeccChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 322 VDIVSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 322 ~~~~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
+.-+..+.|.+..++++.... .++.+||.++-+....++.+.|+.. |.++..+|+++++.+|..++.+..+|+.+|+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 344566777788888887644 4669999999999999998888754 78899999999999999999999999999999
Q ss_pred Ecccc
Q 013965 400 ATDVA 404 (433)
Q Consensus 400 aT~~~ 404 (433)
.|..+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 99544
No 361
>PRK04195 replication factor C large subunit; Provisional
Probab=95.02 E-value=0.12 Score=51.85 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999985
No 362
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.02 E-value=0.24 Score=47.57 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=52.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.+++|+|||+..+.. +..+... +.+++|+.-. +-..|+...+.+++-.. ....+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~-a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e----- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQV-AARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE----- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHH-HHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc-----
Confidence 3577999999999999853333 2333221 4578888754 44567766666654211 00011110
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
...+.+...+.. .+.++||||+++.+.
T Consensus 145 -------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 123344444432 347899999999774
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=95.02 E-value=0.3 Score=47.73 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 013965 138 DLIGIAETGSGKTLAYL 154 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~ 154 (433)
.+++++++|+|||++..
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47888999999998643
No 364
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.19 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=17.1
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.+++.||.|+|||+++. .+...+.
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHh
Confidence 35999999999999744 3344443
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.00 E-value=0.29 Score=47.79 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHHH
Q 013965 138 DLIGIAETGSGKTLAYL 154 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~ 154 (433)
.+++++++|+|||++..
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999998643
No 366
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.99 E-value=0.07 Score=45.93 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhHh-cCCcEEEEccCCCchhHH
Q 013965 122 PTPIQAQGWPMAL-KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 122 ~~~~Q~~~i~~~l-~g~~~lv~a~TGsGKT~~ 152 (433)
.++-|.+.+.... .+..+++++|||||||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4577777776655 578999999999999984
No 367
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.14 Score=52.40 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=25.2
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+++++||||+|+|....|. .+.+.++..+....+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 356899999999998655333 3455555544445555443
No 368
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.66 Score=44.42 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=19.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
.++++-|+||+|||.+ .--++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4799999999999986 4444555543
No 369
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.92 E-value=0.27 Score=44.18 Aligned_cols=40 Identities=30% Similarity=0.158 Sum_probs=26.6
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
..|+-+++.|++|+|||.-.+-.++..+... +..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 3577899999999999985333333333321 556788873
No 370
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.88 E-value=0.089 Score=50.10 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=27.3
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 184 (433)
.+..++++||||||||+. +-.++..+... .+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 356799999999999985 34444444321 13456666555444
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.88 E-value=0.57 Score=41.90 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=34.4
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|.-+++.+++|+|||.-....+...+.. +.+++++.-- +-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 35779999999999998544444433332 5567777654 34456666666654
No 372
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.82 E-value=0.5 Score=44.37 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=24.9
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
...+|++||+|.+... ....+..++....+...+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987543 2345666666666666666544
No 373
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.21 Score=48.34 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=26.1
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++||||+|+|... ....+.+.++.-+++. ++++.+|
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~ 155 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAP 155 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEEC
Confidence 356789999999998544 3345666666544444 4445554
No 374
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.77 E-value=0.044 Score=51.80 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=30.2
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
+..+.+++++|+||||||+. +-.++..+.. ..+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 44578999999999999984 3333333321 34677788887764
No 375
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.74 E-value=0.39 Score=50.50 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
..++++.||+|+|||..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998643
No 376
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.73 E-value=0.03 Score=47.59 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=25.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.++.||+.||||.- ++-.+...... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~-------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA-------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT-------T-EEEEEEES
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC-------CCeEEEEEec
Confidence 57889999999986 54444444432 6789999886
No 377
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.70 E-value=0.16 Score=50.91 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHh-hcCCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccccc
Q 013965 329 QKYNKLVKLLED-IMDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAAR 406 (433)
Q Consensus 329 ~k~~~l~~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~ 406 (433)
.|-...+.++.. ...++++||.++++.-+.++++.|++. +..+..+||+++..+|.+++.+..+|+.+|+|+|..+-.
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 344444444433 234668999999999999999999764 677899999999999999999999999999999964432
Q ss_pred CCCc--cCeEEEEc
Q 013965 407 GLGN--CACVIIVL 418 (433)
Q Consensus 407 Gldi--~~~Vi~~d 418 (433)
+.+ ...||+-+
T Consensus 89 -~p~~~l~lIIVDE 101 (505)
T TIGR00595 89 -LPFKNLGLIIVDE 101 (505)
T ss_pred -CcccCCCEEEEEC
Confidence 233 56666544
No 378
>PF05729 NACHT: NACHT domain
Probab=94.69 E-value=0.33 Score=40.44 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=17.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
-++|.|+.|+|||.. +.-+...+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 478999999999985 3344444443
No 379
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.67 E-value=0.48 Score=43.94 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=74.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec--CHHHHHHHHHHHHHhccCCCceEEEE-ECCccChH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP--TRELAVQIQQESTKFGASSKIKSTCI-YGGVPKGP 214 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P--tr~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 214 (433)
.+++++-.|+|||+. +.=+..++..+ |.++++.+- .|+-|.++.+.+.+ ..++.+..- +|..+..
T Consensus 141 Vil~vGVNG~GKTTT-IaKLA~~l~~~-------g~~VllaA~DTFRAaAiEQL~~w~e---r~gv~vI~~~~G~DpAa- 208 (340)
T COG0552 141 VILFVGVNGVGKTTT-IAKLAKYLKQQ-------GKSVLLAAGDTFRAAAIEQLEVWGE---RLGVPVISGKEGADPAA- 208 (340)
T ss_pred EEEEEecCCCchHhH-HHHHHHHHHHC-------CCeEEEEecchHHHHHHHHHHHHHH---HhCCeEEccCCCCCcHH-
Confidence 478889999999995 33333333332 666666654 35555444444433 334444431 2222211
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcC-CcHHHHHHHHHhcCCCC------cEEEEEecc
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDR------QTLYWSATW 287 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~------~~l~~SAT~ 287 (433)
...+.++.. .-+++++|++|=|-||-.. +....+++|.+-+.+.. -++.+-||.
T Consensus 209 -----------------VafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 209 -----------------VAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred -----------------HHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 112223221 1356889999999887543 36678888877776554 344458998
Q ss_pred chHHHHHHHHh
Q 013965 288 PKEVEHLARQY 298 (433)
Q Consensus 288 ~~~~~~~~~~~ 298 (433)
-.+.-.-++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 77766666654
No 380
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.67 E-value=0.11 Score=54.63 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC----C-CceEE-EcCCCCHHHHHHHHHHHhcCCCCEEEEcccc-ccCCCc-----
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMD----G-WPALS-IHGDKSQAERDWVLSEFKAGKSPIMTATDVA-ARGLGN----- 410 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~----~-~~~~~-lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~-~~Gldi----- 410 (433)
.++++++.++|.--+.++++.|.+. + ..+.. +|+.|+..++++++++|.+|+.+|||+|+.+ ..-.+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 4679999999999999998888754 2 44433 9999999999999999999999999999654 333332
Q ss_pred cCeEEEEcC
Q 013965 411 CACVIIVLC 419 (433)
Q Consensus 411 ~~~Vi~~d~ 419 (433)
.+.|++-|.
T Consensus 204 FdfifVDDV 212 (1187)
T COG1110 204 FDFIFVDDV 212 (1187)
T ss_pred CCEEEEccH
Confidence 555555543
No 381
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.66 E-value=0.3 Score=45.60 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
++.+++.|++|+|||.. +.++...+.
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999974 333444443
No 382
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.22 Score=51.01 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.6
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4568899999999886432 234555555544444444444
No 383
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.59 E-value=0.25 Score=49.83 Aligned_cols=160 Identities=14% Similarity=0.234 Sum_probs=92.2
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcC-CCeEEEeCCCC-c-----------
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLY-NPYKVIIGSPD-L----------- 312 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~----------- 312 (433)
.+.++.+|-|.++ ...+. ..+-+++...|+.+ +.++...++. .+..+...+.. .
T Consensus 526 ~lky~lL~pA~~f-----~evv~-------earavvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv 592 (821)
T KOG1133|consen 526 TLKYMLLNPAKHF-----AEVVL-------EARAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVV 592 (821)
T ss_pred eEEEEecCcHHHH-----HHHHH-------HhheeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeee
Confidence 3678888888762 22222 23447777888754 4445444443 12111111110 0
Q ss_pred ---ccccceeeeeeccChhHHHHHHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHHhCCC-------ceEEEcCCCC
Q 013965 313 ---KANHAIRQHVDIVSESQKYNKLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRMDGW-------PALSIHGDKS 379 (433)
Q Consensus 313 ---~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~lh~~~~ 379 (433)
.....+...+..-.....+..|-..+.. ..++ -+++|++|.+-...+...+.+.|+ +.+.+-..-+
T Consensus 593 ~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPg-GvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~ 671 (821)
T KOG1133|consen 593 SSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPG-GVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT 671 (821)
T ss_pred ccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCC-cEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc
Confidence 1111222223333344445555555543 3344 499999999999999988876653 2233333333
Q ss_pred HHHHHHHHHHHh----cCCCCEEEEc--cccccCCCc----cCeEEEEcCCCc
Q 013965 380 QAERDWVLSEFK----AGKSPIMTAT--DVAARGLGN----CACVIIVLCTFV 422 (433)
Q Consensus 380 ~~~r~~~~~~f~----~g~~~iLvaT--~~~~~Gldi----~~~Vi~~d~p~~ 422 (433)
-+.+++.|. .|...+|+|. .-+++|||+ .++||++++|..
T Consensus 672 ---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 672 ---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred ---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCC
Confidence 355677665 4565677776 688999999 999999999875
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.29 Score=50.29 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=22.4
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 282 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~ 282 (433)
..+.+++||||||+|... -...+.+.++.-+....+|+
T Consensus 119 ~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 119 QARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred cCCceEEEEECccccCHH-HHHHHHHHHhcCCcCeEEEE
Confidence 356789999999987543 23344555554333333333
No 385
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.56 E-value=0.28 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=40.7
Q ss_pred ccceeEeeccchhhhcCCc--HHHHHHHHHhcCCCCcEEEEEeccchHHHHHHH
Q 013965 245 RRVTYLVLDEADRMLDMGF--EPQIKKILSQIRPDRQTLYWSATWPKEVEHLAR 296 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 296 (433)
..+++||+||+-..++.++ ...+..+++.-++...+|+.--..|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 5689999999998888774 457777888877777888777778887766653
No 386
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.53 E-value=0.35 Score=41.64 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~ 283 (433)
.....++||||+|++... ....+.+.++..++...+++.
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999987543 233455555554444444443
No 387
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.50 E-value=0.14 Score=47.31 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999864
No 388
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.46 E-value=0.28 Score=49.19 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=28.0
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..+.+++||||||+|... -...+.+.++..++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 456899999999987643 3345667777666666666555
No 389
>PRK13764 ATPase; Provisional
Probab=94.45 E-value=0.096 Score=53.11 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.++++++++|||||||+. +.+++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999984 455555554
No 390
>PRK04328 hypothetical protein; Provisional
Probab=94.44 E-value=0.43 Score=43.16 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=36.1
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|..+++.+++|+|||.-.+-.+...+.. +..+++++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46789999999999997544444444433 55677776 4556666777776665
No 391
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.12 Score=52.60 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 013965 137 RDLIGIAETGSGKTLAYLLP 156 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~ 156 (433)
..+|+.+|.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999975443
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.36 E-value=0.092 Score=48.48 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
++.+++++|||+|||+..
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999863
No 393
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.39 Score=45.05 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=35.6
Q ss_pred EEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 225 IVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 225 Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
|-|-....+.+.+...+. ....+++|||+||.|... -...+.++++..+ +..++++|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 333333345555554433 357899999999987543 3456667776655 5555555543
No 394
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.27 E-value=0.29 Score=49.65 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=23.6
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
...+++|+||||.|... -...+.+.++..++...+|+.+
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 45789999999987543 2334555555544444444433
No 395
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.26 E-value=0.25 Score=45.04 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=68.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.=+++.|.+|.|||..++-.+...+... +..+++++.- .-..++..++-..... +....+..+.....
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlE-m~~~~l~~R~la~~s~--v~~~~i~~g~l~~~ 87 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLE-MSEEELAARLLARLSG--VPYNKIRSGDLSDE 87 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESS-S-HHHHHHHHHHHHHT--STHHHHHCCGCHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCC-CCHHHHHHHHHHHhhc--chhhhhhccccCHH
Confidence 356688999999999986444444444432 4678888763 1222333333222111 11111111211112
Q ss_pred hHHHh------hcCCcEEE-e----ChHHHHHHHHcCCcccccceeEeeccchhhhcC----CcHHHHHHHHHhcC----
Q 013965 215 QVRDL------QKGVEIVI-A----TPGRLIDMLESHNTNLRRVTYLVLDEADRMLDM----GFEPQIKKILSQIR---- 275 (433)
Q Consensus 215 ~~~~~------~~~~~Iiv-~----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~----~~~~~~~~i~~~~~---- 275 (433)
+...+ .....+.| . |++.+...+.........+++||||=.|.+... +....+..+...++
T Consensus 88 e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 88 EFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 21111 11223333 3 344555544432222267899999999987653 23444444433332
Q ss_pred -CCCcEEEEEec
Q 013965 276 -PDRQTLYWSAT 286 (433)
Q Consensus 276 -~~~~~l~~SAT 286 (433)
.+..++++|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 25556665554
No 396
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.25 E-value=0.36 Score=47.75 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHhHhc------C----CcEEEEccCCCchhHHHH-HHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 121 EPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLAYL-LPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~------g----~~~lv~a~TGsGKT~~~~-l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
.+-|+|.-.+-.++- + +..++..|-+-|||..+. +.....+..+ ..+..+.|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 457899999988772 1 358899999999997433 2222222221 23778999999999998888
Q ss_pred HHHHHhccCCC-ceEEEEECCccChHhHHHhhcCCc---EEEeChHHHHHHHHcC--CcccccceeEeeccchhhhcCCc
Q 013965 190 QESTKFGASSK-IKSTCIYGGVPKGPQVRDLQKGVE---IVIATPGRLIDMLESH--NTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~---Iiv~Tp~~l~~~l~~~--~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
..++....... ++. ......+ |.+.-....+..+... ...-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 136 NPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 87776543321 110 0000111 1111111112222222 2233457899999999865442
Q ss_pred HHHHHHHHHhc--CCCCcEEEEEe
Q 013965 264 EPQIKKILSQI--RPDRQTLYWSA 285 (433)
Q Consensus 264 ~~~~~~i~~~~--~~~~~~l~~SA 285 (433)
..+..+..-+ +++.+++..|-
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEec
Confidence 3333333322 46777777665
No 397
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.24 E-value=0.057 Score=53.94 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=40.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+++++||||||||..+++|.+... ...++|+=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999987432 2258999999999888877777654
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.22 E-value=0.14 Score=46.80 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=32.2
Q ss_pred cHHHHHHHHhHhc--CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 123 TPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 123 ~~~Q~~~i~~~l~--g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
.+.|.+.+..++. +..++++++||||||+. +-.++..+... +.+++.+-...|
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~~-------~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNTP-------EKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCCC-------CCeEEEECCCce
Confidence 4556666655543 34689999999999985 44455554321 335666544444
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.20 E-value=0.46 Score=47.61 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
|..+++.+|+|+|||+..+..+...+.. +.+++|++ ..|-..|+...++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 4679999999999998644444333332 56788877 5678888888888875
No 400
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.15 E-value=0.8 Score=48.45 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
..++++.||+|+|||....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999998633
No 401
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.06 E-value=0.39 Score=42.66 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=19.2
Q ss_pred HhcCC-cEEEEccCCCchhHHHHHHHHHH
Q 013965 133 ALKGR-DLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 133 ~l~g~-~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
+-.++ -+.++++-|||||...- +++..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 33455 78899999999998754 34433
No 402
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.06 E-value=0.5 Score=46.46 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=30.0
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHh-cCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVN-AQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~-~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
..|.-+++.|++|+|||.. .+-+..++. .+ +..+++++. ..-..|+..++-
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia~~~a~~~-------g~~v~~fSl-Em~~~~l~~Rl~ 243 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIAENVALRE-------GKPVLFFSL-EMSAEQLGERLL 243 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHHHHHHHhC-------CCcEEEEEC-CCCHHHHHHHHH
Confidence 3466789999999999985 444443332 22 445777762 234444444443
No 403
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.02 E-value=0.055 Score=48.38 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.3
Q ss_pred EEEEccCCCchhHH
Q 013965 139 LIGIAETGSGKTLA 152 (433)
Q Consensus 139 ~lv~a~TGsGKT~~ 152 (433)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.98 E-value=0.17 Score=52.42 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=37.9
Q ss_pred ceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 247 ~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
-=++|+|+-|++.+...-..++.+++..+++..+++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 4589999999999988888999999999999999999877543
No 405
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.93 E-value=0.31 Score=53.72 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=61.0
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc-ccccCCCc--cCeE
Q 013965 342 MDGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGLGN--CACV 414 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~~Gldi--~~~V 414 (433)
..+.+++|.|+|+.-|.++++.+++. ++.+..+++..+..++..+++..++|..+|+|+|. .+...+.+ +.++
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 45679999999999999999888652 46778899999999999999999999999999995 44444555 6665
Q ss_pred EE
Q 013965 415 II 416 (433)
Q Consensus 415 i~ 416 (433)
|+
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 54
No 406
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.85 E-value=0.15 Score=43.46 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
.+.+++++++.|++|+|||..+ .++...+... +..++++. ..+|...+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEEE-HHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEee-cCceeccc
Confidence 3446789999999999999863 3344444432 55666654 44555443
No 407
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.82 E-value=0.14 Score=52.18 Aligned_cols=45 Identities=36% Similarity=0.440 Sum_probs=31.3
Q ss_pred HHHCCCCCCcHHHHHHHHhHhc--CCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 114 ISKAGFFEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~~l~--g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
|.+.|| .+.|.+.+..+.. ...++++||||||||+. +..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 445565 5677777766554 34688999999999986 455666653
No 408
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.79 E-value=1.1 Score=48.33 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHHH
Q 013965 137 RDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~ 154 (433)
.+.++.||+|+|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999998643
No 409
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.75 E-value=0.085 Score=52.97 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
+|+.+|.+.+..+. .|+--+..+|||+|||+..+=.++.++..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 67899998887755 58999999999999999866666666543
No 410
>PRK06904 replicative DNA helicase; Validated
Probab=93.73 E-value=1.2 Score=44.43 Aligned_cols=116 Identities=17% Similarity=0.076 Sum_probs=58.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECC-ccCh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGG-VPKG 213 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~-~~~~ 213 (433)
.|.=+++.|.+|.|||.- .+-+...+... .+..+++.+. ..-..|+..++-..... +....+..+ .-..
T Consensus 220 ~G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~g~~l~~ 289 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASLSR--VDQTKIRTGQNLDQ 289 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHhccCCCCCH
Confidence 355688889999999984 44444433221 1445666654 35556666555443222 222112222 1112
Q ss_pred HhH-------HHhhcCCcEEE-----eChHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 214 PQV-------RDLQKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 214 ~~~-------~~~~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
... ..+.....+.| .|+..+...+......-..+++||||-.+.|..
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 221 12222344555 355555443332111112488999999997753
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.51 Score=47.99 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=23.6
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+.+++|+||+|+|... ....+.+.++..++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~~-vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPYI-VFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHH-HHHHHHHhhccCCCCE-EEEEecC
Confidence 456899999999987643 2233444455433333 3334334
No 412
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.69 E-value=0.15 Score=50.86 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=29.9
Q ss_pred HHHCCCCCCcHHHHHHHHhHhcC-C-cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 114 ISKAGFFEPTPIQAQGWPMALKG-R-DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 114 l~~~g~~~~~~~Q~~~i~~~l~g-~-~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
|...|+ .+-|.+.+..+... + -++++||||||||+. +..++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 344554 56777777666543 3 478999999999996 444555543
No 413
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.66 E-value=0.54 Score=51.22 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.7
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccch
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPK 289 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 289 (433)
.--+||||++|.+.+......+..++...+++..+++.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34689999999876555667888888888889999888877543
No 414
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.64 E-value=0.38 Score=48.17 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=76.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc-cCCCce-EEEEECCccCh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG-ASSKIK-STCIYGGVPKG 213 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~-~~~~~~-~~~~~g~~~~~ 213 (433)
.+-.+..-|--.|||+ |+.|++..++..- .+.++.|+++-+--++-+.+++..-+ +..+-+ +...
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-------
Confidence 4567888899999998 5888887776532 38899999999988888777765422 111111 1111
Q ss_pred HhHHHhhcCCcEEEeChHHH-----HHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEEec
Q 013965 214 PQVRDLQKGVEIVIATPGRL-----IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSAT 286 (433)
Q Consensus 214 ~~~~~~~~~~~Iiv~Tp~~l-----~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT 286 (433)
.+..|.+.-|+.= ..-.+.+...=+++.+++|||||-+- ...+..|+..+ ..+.++|..|.|
T Consensus 269 -------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 -------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1123333333211 01112233345678999999999543 22444444443 357788888877
No 415
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.62 E-value=0.41 Score=47.77 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999984
No 416
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.61 E-value=0.089 Score=53.62 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=41.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
++++++||||||||..+++|.+... +..++|+=|--|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 5799999999999999999988763 2348999999999988887777754
No 417
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.58 E-value=0.11 Score=44.43 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=28.3
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCC-CCcEEEEEe
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSA 285 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-~~~~l~~SA 285 (433)
.+.+++++||...-+|......+.+.+..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45689999999987877666666666665533 356665544
No 418
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.57 E-value=0.41 Score=44.78 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
.++++.||.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999974
No 419
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.55 E-value=0.46 Score=45.60 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|+.+++.+|+|+|||+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 589999999999999984
No 420
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.85 Score=46.97 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=26.2
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
....+++||||+|+|... -...+.+.++..+.... +++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 567899999999998653 23356666665544444 444444
No 421
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.51 E-value=0.77 Score=45.43 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=53.1
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.+++|+|||+..+. ++..+... +.+++|+..- +-..|+...+.+++-.. ....+..
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg~~~--~~l~~~~------ 155 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLGLPE--PNLYVLS------ 155 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcCCCh--HHeEEcC------
Confidence 367799999999999985443 33333221 4468888764 55667776666654211 0001110
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
-.+.+.+...+.. .+.++||||.+..+.
T Consensus 156 ------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 156 ------------ETNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ------------CCCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 0233455555543 246899999999764
No 422
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.50 E-value=0.13 Score=47.18 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=30.3
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
..+.+++++|+||||||+. +-.++..+... ..+++++-.+.|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEecccccee
Confidence 4578999999999999985 44555554431 35788888776654
No 423
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.49 E-value=0.06 Score=52.25 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=38.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+++++|+||+|||.++++|.+... ...++|+=|.-++........++.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHcC
Confidence 478999999999999998876542 2358999999999887776665543
No 424
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.094 Score=47.94 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
..|+++.+|||||||+.+ -.|..++.
T Consensus 97 KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 458999999999999843 34555554
No 425
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.45 E-value=0.58 Score=41.54 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=35.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|..+++.+++|+|||...+-.+...+.. +..++++.-. +-..++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 36779999999999997534333333332 5567777654 56777777777764
No 426
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.35 E-value=0.048 Score=46.40 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCc--ccccceeEeeccchhhhcC
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVLDEADRMLDM 261 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lVvDEah~~~~~ 261 (433)
.+.....++|||+++..|++-...... ...+-.+|||||||.+.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 344556799999999988754322111 1234579999999987653
No 427
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.35 E-value=2.3 Score=40.65 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=63.2
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH----HHHHHHhccC-CCceEEEEECCccChH
Q 013965 140 IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI----QQESTKFGAS-SKIKSTCIYGGVPKGP 214 (433)
Q Consensus 140 lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~----~~~~~~~~~~-~~~~~~~~~g~~~~~~ 214 (433)
++.++.|+|||.+..+.++.++...+. ...++++ |+..-+... ...+..+... ..+.........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK---- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc----
Confidence 467899999999877777777765431 2455555 655544442 2333333333 122211111110
Q ss_pred hHHHhhcCCcEEEeChHHH--HHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc--chH
Q 013965 215 QVRDLQKGVEIVIATPGRL--IDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW--PKE 290 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l--~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~--~~~ 290 (433)
..+.++..|.+.+...- ..-+. =..++++++||+-.+.+..+...+........ ....+++|.|. ...
T Consensus 71 --~~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 71 --IILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGW 142 (384)
T ss_dssp --EEETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSH
T ss_pred --EEecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCc
Confidence 00135566666663321 11111 14578999999887655434444433333222 22222444443 334
Q ss_pred HHHHHHHhcCCC
Q 013965 291 VEHLARQYLYNP 302 (433)
Q Consensus 291 ~~~~~~~~~~~~ 302 (433)
...+......+.
T Consensus 143 ~~~~~~~~~~~~ 154 (384)
T PF03237_consen 143 FYEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHHCTS
T ss_pred eeeeeehhhcCC
Confidence 555555555444
No 428
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.44 Score=47.55 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=24.0
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+..++|+||||.|....+ ..+.+.+...++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 45678999999998754322 34445555444444 3334334
No 429
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.33 E-value=0.68 Score=49.74 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
.++++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999854
No 430
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.27 E-value=0.24 Score=46.94 Aligned_cols=64 Identities=23% Similarity=0.260 Sum_probs=40.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhHh-cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 111 MQEISKAGFFEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 111 ~~~l~~~g~~~~~~~Q~~~i~~~l-~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
++.+.+.|+ +.+.+.+.+..+. .+.+++++++||+|||.. +.++..... ...+++++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl--l~al~~~i~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL--LSALLALVA-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHccCC-------CCCcEEEECCcceec
Confidence 455555665 3567777776655 467999999999999983 333322221 134577777776663
No 431
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.23 E-value=0.77 Score=45.45 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=23.6
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYW 283 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~ 283 (433)
.+.+++||||+|.|... -...+.+.++..++...+|+.
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEE
Confidence 56789999999987543 233455555554444444443
No 432
>PTZ00146 fibrillarin; Provisional
Probab=93.22 E-value=1.5 Score=40.34 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHhHhcC--------CcEEEEccCCCchhHHHHH
Q 013965 119 FFEPTPIQAQGWPMALKG--------RDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g--------~~~lv~a~TGsGKT~~~~l 155 (433)
|....|++++.--+++.+ .+.|+-.-+|+|=|+.++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 445566776666555543 3467777788887765443
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.22 E-value=0.33 Score=43.76 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCchhH
Q 013965 134 LKGRDLIGIAETGSGKTL 151 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~ 151 (433)
-.|+.+++.+|.|+|||+
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 368999999999999997
No 434
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.71 Score=43.62 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.++..+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999983
No 435
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.20 E-value=1.4 Score=42.17 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
.+.+.+.|+.|+|||. ++-++.....-. .+.+ ++.-+...++++.+.++. ++.+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~-----~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK-----RKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP--- 116 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc-----cccc----ccccHHHHHHHHHHHHHh-----------CCCcc---
Confidence 4679999999999998 444443322110 1111 133466677777776643 11110
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc-CCCCcEEEEEeccchHH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEV 291 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~ 291 (433)
...+.+.+ .....+|.+||.|. .|-+-...+.+++..+ ....-+++.|-+.|.++
T Consensus 117 --------------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 --------------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --------------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00111222 24467999999993 2322233445555443 45667777777777654
No 436
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.19 E-value=1 Score=48.25 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchhHHHHH
Q 013965 137 RDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l 155 (433)
.++++.||+|+|||..+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5899999999999986443
No 437
>PHA00012 I assembly protein
Probab=93.19 E-value=2.9 Score=38.92 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=31.4
Q ss_pred ccceeEeeccchhhhcC-Cc----HHHHHHHHHhcCC-CCcEEEEEeccchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRMLDM-GF----EPQIKKILSQIRP-DRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~-~~----~~~~~~i~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
..-.++|+||||..+.. .+ ...+...+...+. ..-++++|-.+ ..+...++..+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p-s~VDs~IR~ll 139 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI-SIMDKQAREAL 139 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH-HHHhHHHHHhh
Confidence 56789999999987642 12 2335555555444 34455555554 45555555443
No 438
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.97 E-value=0.26 Score=46.09 Aligned_cols=56 Identities=23% Similarity=0.162 Sum_probs=38.4
Q ss_pred CCcHHHHHHHH-hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 121 EPTPIQAQGWP-MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 121 ~~~~~Q~~~i~-~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
.+.+.|..-+. ++..+++++++++||||||.. +.+++..+-. ..+++.+--|.++.
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~~ 183 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPELK 183 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEecccccc
Confidence 45666655554 455689999999999999985 6666655543 34577776666553
No 439
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.97 E-value=1.7 Score=46.78 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=20.2
Q ss_pred HHHHHHhHh----c--CCcEEEEccCCCchhHHH
Q 013965 126 QAQGWPMAL----K--GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 126 Q~~~i~~~l----~--g~~~lv~a~TGsGKT~~~ 153 (433)
|.+-+..+. + ..++++.||.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555443 2 358999999999999854
No 440
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.96 E-value=0.6 Score=47.32 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHH----HhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc-c
Q 013965 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQL----RMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-D 402 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L----~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT-~ 402 (433)
-.-...++.++.....+.++..-++|.--|++.+..+ ...|+++..+.|.+...+|.++++...+|+++++|.| .
T Consensus 295 GKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA 374 (677)
T COG1200 295 GKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA 374 (677)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch
Confidence 3445667777777778889999999976666665544 4568999999999999999999999999999999999 5
Q ss_pred ccccCCCc--cCeEEE
Q 013965 403 VAARGLGN--CACVII 416 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~ 416 (433)
.+...+++ ...||+
T Consensus 375 LiQd~V~F~~LgLVIi 390 (677)
T COG1200 375 LIQDKVEFHNLGLVII 390 (677)
T ss_pred hhhcceeecceeEEEE
Confidence 66777888 555554
No 441
>PRK09087 hypothetical protein; Validated
Probab=92.93 E-value=0.36 Score=42.93 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=23.2
Q ss_pred eeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 248 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 248 ~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
++|++|++|.+.. -...+..++..+......++++++.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 4799999997532 2455666666555544445555553
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.92 E-value=0.17 Score=43.99 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=23.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
+++++|||||||+. +..++..+... .+.+++.+....|
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~------~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN------KTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc------CCcEEEEEcCCcc
Confidence 78999999999985 34445454322 1345666555434
No 443
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.91 E-value=0.76 Score=47.73 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.5
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
..+.+++|+||||.|... -...+.+.++..++...+| +.+|
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifI-LaTt 156 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFI-LATT 156 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEE-EEcC
Confidence 457899999999987543 2334555555544444334 3344
No 444
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.91 E-value=0.65 Score=49.19 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35699999999999984
No 445
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.83 E-value=0.18 Score=44.97 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=18.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
=++++++|||||++. +..++.+-.+
T Consensus 129 LviiVGaTGSGKSTt-mAaMi~yRN~ 153 (375)
T COG5008 129 LVIIVGATGSGKSTT-MAAMIGYRNK 153 (375)
T ss_pred eEEEECCCCCCchhh-HHHHhccccc
Confidence 488889999999987 5555555433
No 446
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.83 E-value=0.83 Score=43.70 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=17.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
+.+++.||.|+|||.. ...+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~-a~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI-ARIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhc
Confidence 3578999999999985 333344443
No 447
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.93 Score=42.90 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=28.1
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEe
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 285 (433)
....+++||||||+|... -...+.+.++..+++..+++.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 456799999999987654 34466777776656666665443
No 448
>PRK07004 replicative DNA helicase; Provisional
Probab=92.77 E-value=0.75 Score=45.66 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=54.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.|.+|+|||.- .+-+..++... .+..+++.+. ..-..|+..++-.... ++....+..+.-...
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~~------~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAVE------YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHHH------cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHH
Confidence 356688899999999975 44333333211 1445666643 3344455444432111 111111111222222
Q ss_pred hHHHh------hcCCcEEE-----eChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QVRDL------QKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~~~~------~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
+...+ .....+.| .|+..+...+.+-......+++||||=.+.|.
T Consensus 282 e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 22111 12345555 24444444332211112347899999999875
No 449
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.71 E-value=0.72 Score=44.16 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHhHh---cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 124 PIQAQGWPMAL---KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 124 ~~Q~~~i~~~l---~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
+.=..+|..+. .|+..++.||.|+|||+. +-.+...+.
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~ 194 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSIT 194 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHH
Confidence 34445555444 589999999999999974 333444443
No 450
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.65 E-value=0.96 Score=47.95 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 357899999999999974
No 451
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.63 E-value=0.26 Score=50.06 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=27.0
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
+++-+++|+||+=.-+|...+..+.+.+....+++-+++.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45667888888877677666667766666665555555443
No 452
>PRK08506 replicative DNA helicase; Provisional
Probab=92.62 E-value=0.85 Score=45.46 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=56.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.|.||.|||.- .+-++.++..+ +..+++++. ..-..|+..++-..... +....+..+.-...
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAKTS--IPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHHhcCCCCHH
Confidence 356688899999999975 44444444321 445666654 34556666555442222 21111111211111
Q ss_pred hH-------HHhhcCCcEEEe-----ChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QV-------RDLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~-------~~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
.. ..+. ...+.|- |+..+...+..-......+++||||=.+.|.
T Consensus 260 e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 260 EWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 11 1122 2344442 4455544433211112358999999999775
No 453
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.62 E-value=1.3 Score=43.79 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=55.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.|++|+|||.- .+-++.++... .+..+++++. ..-..|+.+++......... ..+..+.-...
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~--~~~~~g~l~~~ 263 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSESRVDS--QKLRTGKLSDE 263 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHhcCCCH--HHhccCCCCHH
Confidence 356688999999999975 44333333221 1445666654 34455555555443322211 11111211111
Q ss_pred hH-------HHhhcCCcEEE-----eChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QV-------RDLQKGVEIVI-----ATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~-------~~~~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
+. ..+. ...+.| .|+..+...+...... ..+++||||=.+.+.
T Consensus 264 ~~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 11 1122 233444 2444554433321111 247899999998764
No 454
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.3 Score=46.33 Aligned_cols=16 Identities=31% Similarity=0.575 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+|++.-+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999984
No 455
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.55 E-value=0.34 Score=43.78 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred hHHHHHHHHcCCcccccceeEeeccchhhhc
Q 013965 230 PGRLIDMLESHNTNLRRVTYLVLDEADRMLD 260 (433)
Q Consensus 230 p~~l~~~l~~~~~~l~~~~~lVvDEah~~~~ 260 (433)
|+-|..++.+ ++.-+++.+||+|++.-
T Consensus 91 ~gDlaaiLt~----Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 91 PGDLAAILTN----LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred hhhHHHHHhc----CCcCCeEEEehhhhcCh
Confidence 4445555544 66778999999999653
No 456
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.91 Score=44.66 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHh----Hh---cC-----CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 013965 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPM----AL---KG-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (433)
Q Consensus 104 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~----~l---~g-----~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (433)
++.+++-++.+...|+....|.=.+.+.. +. .. ..+++.+|.|||||..+. -+..- .+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA--~iA~~--------S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA--KIALS--------SD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH--HHHhh--------cC
Confidence 46777777777777766555444444432 11 11 259999999999996322 22211 12
Q ss_pred CCEEEEEecC
Q 013965 172 GPIVLVLAPT 181 (433)
Q Consensus 172 ~~~~lil~Pt 181 (433)
=|.+=++.|.
T Consensus 564 FPFvKiiSpe 573 (744)
T KOG0741|consen 564 FPFVKIISPE 573 (744)
T ss_pred CCeEEEeChH
Confidence 5667777774
No 457
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.51 E-value=0.86 Score=37.29 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.5
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhc
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQI 274 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~ 274 (433)
..+-+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3456899999998777776677777777666
No 458
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.47 E-value=0.24 Score=46.31 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~ 186 (433)
.|+-+.+.+|+|+|||...+ .++...... +..++++..-..+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL-~~~~~~~~~-------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLAL-HAIAEAQKA-------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHHc-------CCcEEEEcccchhHH
Confidence 46789999999999998644 334333322 556777765444443
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.47 E-value=0.1 Score=44.01 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=20.6
Q ss_pred ccceeEeeccchhhh--cCCcHHHHHHHHHhcCCCCcEE
Q 013965 245 RRVTYLVLDEADRML--DMGFEPQIKKILSQIRPDRQTL 281 (433)
Q Consensus 245 ~~~~~lVvDEah~~~--~~~~~~~~~~i~~~~~~~~~~l 281 (433)
...+++|+||+=.|- ..+|...+..++. ++..+|
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi 129 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVI 129 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEE
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEE
Confidence 467899999998663 3448888888776 444444
No 460
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.45 E-value=6.5 Score=36.73 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc---CCCCcEEEEEecc--chHHHHHHHHhcCC
Q 013965 231 GRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI---RPDRQTLYWSATW--PKEVEHLARQYLYN 301 (433)
Q Consensus 231 ~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~--~~~~~~~~~~~~~~ 301 (433)
..|+..+..+....+---++|+||.|..........+-.++... +..+-++++|.-+ -+-.++.++.-+..
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFsh 197 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSH 197 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccc
Confidence 34566666655444444678999999755444333333443332 3344455555443 22334444444433
No 461
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=3.5 Score=40.11 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH-HHHHHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR-ELAVQIQQ 190 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr-~L~~q~~~ 190 (433)
+...-|++.+|+|||.+ +--++.++... ...+.++++--+. ..+..++.
T Consensus 175 ~gSlYVsG~PGtgkt~~-l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL-LSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CcceEeeCCCCcchHHH-HHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 46799999999999986 33344444332 1244555555442 34444443
No 462
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.41 E-value=0.35 Score=45.76 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..+++.||+|+|||..
T Consensus 52 ~~~ll~GppG~GKT~l 67 (328)
T PRK00080 52 DHVLLYGPPGLGKTTL 67 (328)
T ss_pred CcEEEECCCCccHHHH
Confidence 5799999999999985
No 463
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.33 E-value=0.3 Score=43.27 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=30.1
Q ss_pred ChHHHHHHHHcCCcccccceeEeeccchhhh-c----CCcHHHHHHHHHhcC-CCCcEEEEEecc
Q 013965 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRML-D----MGFEPQIKKILSQIR-PDRQTLYWSATW 287 (433)
Q Consensus 229 Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~-~----~~~~~~~~~i~~~~~-~~~~~l~~SAT~ 287 (433)
+...+...+...... -+||+||+|.+. . ..+...+..++.... .....+.++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 444455555543221 789999999988 2 225556666666632 233344566664
No 464
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.31 E-value=0.44 Score=41.24 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=27.1
Q ss_pred cceeEeeccchhhhcCC-cH----HHHHHHHHhcCCCC-cEEEEEeccchHHHHHHHHh
Q 013965 246 RVTYLVLDEADRMLDMG-FE----PQIKKILSQIRPDR-QTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~-~~----~~~~~i~~~~~~~~-~~l~~SAT~~~~~~~~~~~~ 298 (433)
.-.++|+||||...... +. +.+...+...+... -++++|-. +..+...++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHHH
Confidence 46799999999876543 21 23335555555544 44555544 45555555543
No 465
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.28 E-value=0.13 Score=53.12 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=39.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.++++++||||||||..+++|-+... ...++|+=|--|+........++.+
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 35899999999999999999987653 2248888888888877666555543
No 466
>PRK08840 replicative DNA helicase; Provisional
Probab=92.19 E-value=2.3 Score=42.24 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=54.9
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccCh
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 213 (433)
..|.=+++.|.+|.|||.-+ +-+...+..+ .+..+++.+.- .-..|+..++-..... +....+..+.-..
T Consensus 215 ~~g~LiviaarPg~GKTafa-lnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~~ 284 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFA-MNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLSR--VDQTKIRTGQLDD 284 (464)
T ss_pred CCCceEEEEeCCCCchHHHH-HHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHHhcCCCCH
Confidence 34566888899999999753 3333333211 14456666542 3455555554432211 2111111222112
Q ss_pred HhHH-------HhhcCCcEEEe-----ChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 214 PQVR-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 214 ~~~~-------~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
.... .+.....+.|- |...+...+..-......+++||||-.|.|.
T Consensus 285 ~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 285 EDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2211 22123344442 3334443332211111247899999999774
No 467
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.19 E-value=0.21 Score=34.09 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.|...++.+++|+|||. ++-++..+.
T Consensus 22 ~g~~tli~G~nGsGKST--llDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKST--LLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHH--HHHHHHHHH
Confidence 35579999999999998 444444433
No 468
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.57 Score=47.78 Aligned_cols=86 Identities=24% Similarity=0.306 Sum_probs=51.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
|.-+++.+|+|.|||. |+..+++.+.+- -+..-.||.....+
T Consensus 350 GpILcLVGPPGVGKTS--------------------------------LgkSIA~al~Rk------fvR~sLGGvrDEAE 391 (782)
T COG0466 350 GPILCLVGPPGVGKTS--------------------------------LGKSIAKALGRK------FVRISLGGVRDEAE 391 (782)
T ss_pred CcEEEEECCCCCCchh--------------------------------HHHHHHHHhCCC------EEEEecCccccHHH
Confidence 4567788999999996 233333333331 12223466655544
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFE 264 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~ 264 (433)
++-.++ .-|=+-||++++-+..-... =-++++||+|.|...-.+
T Consensus 392 IRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rG 435 (782)
T COG0466 392 IRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRG 435 (782)
T ss_pred hccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCC
Confidence 443333 23446799999887764331 237999999998765333
No 469
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.05 E-value=0.42 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=20.2
Q ss_pred HhHhcCCcEEEEccCCCchhHHHH
Q 013965 131 PMALKGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 131 ~~~l~g~~~lv~a~TGsGKT~~~~ 154 (433)
+.+.++.|++..+|+|+|||-.|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 566678999999999999996544
No 470
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.03 E-value=0.78 Score=45.84 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..+.+||.+++++-+......|...++.+..++++.+..++..++.....++.+|+++|.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 456799999999999988889999999999999999999999999999999999999995
No 471
>PRK14701 reverse gyrase; Provisional
Probab=91.98 E-value=0.63 Score=53.11 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMD------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~ 403 (433)
.+.++||.++|+.-+.++++.|+.. +..+..+||+++..++.++++.+.+|+.+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988762 456788999999999999999999999999999963
No 472
>PRK08760 replicative DNA helicase; Provisional
Probab=91.96 E-value=1.2 Score=44.54 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=55.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
|.-+++.|.+|.|||.- .+-++..+..+ .+..+++.+. ..-..|+..++......... ..+..+.-...+
T Consensus 229 G~LivIaarPg~GKTaf-al~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~--~~i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTTF-ALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNGRINA--QRLRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhHH-HHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhCCCcH--HHHhcCCCCHHH
Confidence 34578889999999975 44343333211 1445666654 34455666665543322211 111112211221
Q ss_pred HHHh------hcCCcEEEe-----ChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 216 VRDL------QKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 216 ~~~~------~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
...+ .....+.|. |++.+...+..... -..+++||||=.+.|.
T Consensus 299 ~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1111 112344443 44555444332111 1347899999999774
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.95 E-value=0.28 Score=45.92 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+..+.+++++++||||||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34578999999999999983
No 474
>PF12846 AAA_10: AAA-like domain
Probab=91.89 E-value=0.29 Score=45.43 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~ 186 (433)
+++++++|+||+|||.... .++..+... +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 3579999999999998755 555554443 677888877755544
No 475
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=1.5 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.+++.||.|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999853
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.87 E-value=2.7 Score=39.74 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=34.0
Q ss_pred ccceeEeeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEEeccchH
Q 013965 245 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKE 290 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 290 (433)
...-++|+|-|+.+-|++ ..+.+.++-+.++.+.-.+.+|++..+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 346789999999988877 4455666666666667778899997654
No 477
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.64 E-value=0.19 Score=41.31 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcC
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQ 164 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~ 164 (433)
..+++.+++|+|||+. ++-+...+...
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc
Confidence 3689999999999985 55555566543
No 478
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.50 E-value=0.43 Score=48.99 Aligned_cols=39 Identities=38% Similarity=0.482 Sum_probs=28.7
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLY 282 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~ 282 (433)
+++-.++|+|||-.-+|...+..+.+.+..+..++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455589999999988888888888887776655554444
No 479
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.36 E-value=0.61 Score=42.47 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=26.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
.|.-+++.+++|+|||.-.+-.+...+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 46789999999999998544444433322 556788773
No 480
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.35 E-value=0.63 Score=48.70 Aligned_cols=71 Identities=20% Similarity=0.145 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.+++-|.+|+... ...++|.|..|||||.+..--+ .++....... ...+|+++=|+-.|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ri-a~li~~~~v~---p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERI-AYLIAAGGVD---PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHH-HHHHHcCCcC---hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4789999999776 5678899999999999844333 4444332111 22489999999999999999998765
No 481
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.33 E-value=1.7 Score=38.95 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=32.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCC----CCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLA----PGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~----~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.-.++.||.|+|||...+-.++......++.. ...+.+|||++-- .=..++.+++..++.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E-d~~~~i~~Rl~~i~~ 65 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE-DPREEIHRRLEAILQ 65 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC-CCHHHHHHHHHHHHh
Confidence 34689999999999865444443332222211 1235678888732 222344455555443
No 482
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=91.29 E-value=0.31 Score=47.21 Aligned_cols=47 Identities=28% Similarity=0.455 Sum_probs=32.1
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
...+++++.|.||+|||.+ +-.++..+..+ +-+++|.=|.-+.....
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRAR-------GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-------T-EEEEEEETTHHHHHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-------CCEEEEEECCchHHHHh
Confidence 4568999999999999974 66777777664 55677777776655433
No 483
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.89 Score=43.95 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=32.0
Q ss_pred ccceeEeeccchhhhcCC--------cHHHHHHHHH----hcCCCCcEEEEEec-cchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRMLDMG--------FEPQIKKILS----QIRPDRQTLYWSAT-WPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~--------~~~~~~~i~~----~~~~~~~~l~~SAT-~~~~~~~~~~~~~ 299 (433)
....++++||+|.++..- .....+.++. ...++-++++++|| .|.+..+.++..+
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf 311 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRF 311 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHh
Confidence 346788899999876421 1222222222 23456688999999 4555555555433
No 484
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.27 E-value=1.1 Score=43.62 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 35799999999999985
No 485
>PRK08006 replicative DNA helicase; Provisional
Probab=91.25 E-value=3.7 Score=40.90 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=55.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.=+++.|.+|.|||.- .+-+...+... .+..++|.+. ..-..|+..++-..... +....+..+.-...
T Consensus 223 ~G~LiiIaarPgmGKTaf-alnia~~~a~~------~g~~V~~fSl-EM~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~ 292 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTF-AMNLCENAAML------QDKPVLIFSL-EMPGEQIMMRMLASLSR--VDQTRIRTGQLDDE 292 (471)
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHH
Confidence 345678889999999974 44443333211 1445666654 24445555554432221 22221222221222
Q ss_pred hHH-------HhhcCCcEEEe-----ChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QVR-------DLQKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~~-------~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
+.. .+.....+.|- |+..+...+..-......+++||||=.|.|.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 211 12123445543 4444444333211111258999999999774
No 486
>PRK05636 replicative DNA helicase; Provisional
Probab=91.16 E-value=1.2 Score=44.73 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHHH
Q 013965 137 RDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~ 154 (433)
.-+++.|.+|.|||.-.+
T Consensus 266 ~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 266 QMIIVAARPGVGKSTLAL 283 (505)
T ss_pred ceEEEEeCCCCCHHHHHH
Confidence 447888999999997433
No 487
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.11 E-value=0.76 Score=47.45 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=38.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH--HHHHHHHHHHHhccC
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE--LAVQIQQESTKFGAS 198 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~--L~~q~~~~~~~~~~~ 198 (433)
..++++.|+||+|||..+.+.+.+.+.. +..++++=|--. |...+...+++.+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~--------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR--------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4689999999999998754444333332 556777777754 777777777776543
No 488
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.02 E-value=0.98 Score=44.24 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=54.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh---hc-CCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---QK-GVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
.|.++|.+.++.-|..+++.+.+.+ +++..++|+...++....+ +. ..+|+|||. .. -..++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g----~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vA-gRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG----YKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VA-GRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc----ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----cc-ccCCCCCcc
Confidence 5678999999999998888888875 8999999998877664444 33 689999993 33 335667888
Q ss_pred eeEe
Q 013965 248 TYLV 251 (433)
Q Consensus 248 ~~lV 251 (433)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8875
No 489
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.01 E-value=1.8 Score=37.27 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=42.2
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHH
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 297 (433)
.++-+.+|+||.-.=+|--....+..++.+++...+.++||.-.=++++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 466789999999876666577788888889988788888888766777766654
No 490
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=90.93 E-value=0.31 Score=51.43 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHhhc----------CCCeEEEEeCCcccHHHHHHHHHh
Q 013965 327 ESQKYNKLVKLLEDIM----------DGSRILIFMDTKKGCDQITRQLRM 366 (433)
Q Consensus 327 ~~~k~~~l~~~l~~~~----------~~~~~lVF~~s~~~~~~l~~~L~~ 366 (433)
+..|...|.++|++.. ..+++||||+..++|.+|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4556666666665432 235799999999999999998865
No 491
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.92 E-value=2.3 Score=39.91 Aligned_cols=40 Identities=5% Similarity=0.075 Sum_probs=25.9
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
....+++||||+|.|... -...+.+.++..+++..+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 456899999999987543 3445666666554455455444
No 492
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=90.92 E-value=0.89 Score=46.56 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH--HHHHHHHHHHHHhccC
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR--ELAVQIQQESTKFGAS 198 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr--~L~~q~~~~~~~~~~~ 198 (433)
..+++|.|+||+|||..+.+.+.+.+.. +..++++=|-. ++...+...+++.+..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 4689999999999999765554444432 56788888876 5777778888877664
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.88 E-value=0.6 Score=39.70 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=26.2
Q ss_pred ceeEeeccchhhhcCCcHHHHHHHHHhcCC-CCcEEEEEe
Q 013965 247 VTYLVLDEADRMLDMGFEPQIKKILSQIRP-DRQTLYWSA 285 (433)
Q Consensus 247 ~~~lVvDEah~~~~~~~~~~~~~i~~~~~~-~~~~l~~SA 285 (433)
-+++++||.-.-+|......+..++..+.. ...+++.|-
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 689999999877777666777777666542 344444333
No 494
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.88 E-value=3.8 Score=40.82 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=71.8
Q ss_pred cCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh---h
Q 013965 144 ETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q 220 (433)
Q Consensus 144 ~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 220 (433)
-.++||+..-++++.+.+... -.|.+||.+-+.+-|.|.++++.. ..++.+.+++|..+..+....+ +
T Consensus 365 lvF~gse~~K~lA~rq~v~~g------~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG------FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhcc------CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHh
Confidence 358888888676665555432 367789999999999999988872 3458899999986654443332 2
Q ss_pred -cCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 221 -KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 221 -~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
....++||| +.+.++ +++..+.+||-++.-
T Consensus 436 ~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 357899999 677775 779999999997765
No 495
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.85 E-value=1.2 Score=44.10 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=54.8
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCccccc
Q 013965 171 DGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRR 246 (433)
Q Consensus 171 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 246 (433)
.+.++||.|-|+--|.++...+...+ +.+.+++|+.+..+....+. ..+.|+|||- +....+++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 36789999999999998888887754 78899999988766554443 3689999993 3344667788
Q ss_pred ceeEee
Q 013965 247 VTYLVL 252 (433)
Q Consensus 247 ~~~lVv 252 (433)
+++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 888864
No 496
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.84 E-value=0.31 Score=50.23 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=39.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..++++.||||+|||..+++|.+... +..++|+=|.-|+........++.+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~----------~gS~VV~DpKgEl~~~Ta~~R~~~G 274 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW----------GGPLVVLDPSTEVAPMVSEHRRDAG 274 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 36899999999999999999976532 3347888899998877766665543
No 497
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.84 E-value=0.22 Score=51.38 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+++++.||||||||..+++|-|.... ..+||+=|.-|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHhC
Confidence 368999999999999999999877542 24788888888877666655554
No 498
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.83 E-value=1.4 Score=44.04 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=69.7
Q ss_pred CcEEEEEecc--chHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc--CCCeEEEEeCC
Q 013965 278 RQTLYWSATW--PKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDT 353 (433)
Q Consensus 278 ~~~l~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~lVF~~s 353 (433)
.-.+.++++- +.++.++++.++.+. ....+.......-+.+.....+...+.+.+++.... ..+.+.|.|.+
T Consensus 589 ~e~v~l~~syrSt~eI~efan~~l~d~----~~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt 664 (747)
T COG3973 589 FEYVGLIASYRSTAEIDEFANSLLPDR----FRIHPLTRSGEKPAVIMSVANEELVQRNPDIIPRMKKRGSETIAVICKT 664 (747)
T ss_pred chhhhhhhhhcChHHHHHHHHHhccCC----CccchhhcCCCCceeeeccchHHHHHhhHHHHHHHHhcCCCceEEECCc
Confidence 3445555554 456677888887641 111112222223334445555555555555554432 34579999999
Q ss_pred cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCccCeEEEEcCC
Q 013965 354 KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGNCACVIIVLCT 420 (433)
Q Consensus 354 ~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi~~~Vi~~d~p 420 (433)
-.+|..+.+.|+... ++......=+.|..|..-+.+ -.+.||. .++||++|+.
T Consensus 665 ~~d~~~~~d~lre~~----------~~r~I~k~nq~f~~~~~vipv---y~aKGlE-FD~viv~d~s 717 (747)
T COG3973 665 DHDCKAVMDSLREKD----------SQRTIAKENQRFHHGSDVIPV---YDAKGLE-FDHVIVVDPS 717 (747)
T ss_pred HHHHHHHHHHHhhcc----------hhhHHHhhcccccCCceEEEe---eecccce-eeeEEEecch
Confidence 999999999998542 111111222334445443333 3455644 6788888875
No 499
>PRK05748 replicative DNA helicase; Provisional
Probab=90.80 E-value=1.8 Score=42.92 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=55.9
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.|.||.|||.- .+-++.++..+ .+..+++++. ..-..|+..++...... +....+..+.-...
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~~--v~~~~i~~~~l~~~ 271 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEGN--IDAQRLRTGQLTDD 271 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHH
Confidence 356688899999999974 44444443211 1445666643 34555665555322111 11111111221222
Q ss_pred hHHHh------hcCCcEEEe-----ChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 215 QVRDL------QKGVEIVIA-----TPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 215 ~~~~~------~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
....+ .....+.|. |+..+...+.........+++||||=.|.+.
T Consensus 272 e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 21111 122344442 4445544333211111258899999999774
No 500
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.66 E-value=0.88 Score=48.46 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.+|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999984
Done!