Query 013965
Match_columns 433
No_of_seqs 326 out of 2937
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 03:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 8.7E-62 3E-66 476.4 40.0 344 86-432 43-390 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.6E-56 2.9E-60 433.0 37.3 345 86-431 2-365 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.4E-53 4.7E-58 416.5 34.4 332 93-431 31-365 (410)
4 3eiq_A Eukaryotic initiation f 100.0 8.2E-52 2.8E-56 404.4 32.2 334 93-432 34-370 (414)
5 1xti_A Probable ATP-dependent 100.0 4.2E-51 1.4E-55 396.3 35.5 326 99-430 8-338 (391)
6 3i5x_A ATP-dependent RNA helic 100.0 7.8E-52 2.7E-56 420.1 31.6 325 106-431 79-431 (563)
7 1s2m_A Putative ATP-dependent 100.0 4.5E-51 1.5E-55 397.4 34.6 327 96-430 18-346 (400)
8 3pey_A ATP-dependent RNA helic 100.0 5E-50 1.7E-54 389.0 35.6 322 97-429 3-336 (395)
9 3fht_A ATP-dependent RNA helic 100.0 7.5E-50 2.6E-54 390.2 36.5 317 95-421 21-345 (412)
10 1hv8_A Putative ATP-dependent 100.0 1.3E-49 4.4E-54 382.3 35.0 320 98-431 5-327 (367)
11 3sqw_A ATP-dependent RNA helic 100.0 3.2E-50 1.1E-54 408.7 30.9 325 106-431 28-380 (579)
12 1fuu_A Yeast initiation factor 100.0 6.4E-51 2.2E-55 395.4 23.4 331 94-432 16-349 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 1.8E-50 6.3E-55 401.9 23.2 333 88-430 78-427 (479)
14 2v1x_A ATP-dependent DNA helic 100.0 1.1E-47 3.8E-52 387.1 29.6 312 101-430 23-355 (591)
15 2z0m_A 337AA long hypothetical 100.0 9.5E-47 3.3E-51 358.2 33.2 302 106-430 1-304 (337)
16 3fho_A ATP-dependent RNA helic 100.0 9.9E-48 3.4E-52 383.8 19.5 331 90-431 110-452 (508)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.7E-46 1.3E-50 372.4 26.2 310 99-430 2-324 (523)
18 3fe2_A Probable ATP-dependent 100.0 2.7E-44 9.3E-49 324.9 27.3 239 73-311 3-241 (242)
19 3oiy_A Reverse gyrase helicase 100.0 1.9E-44 6.6E-49 352.1 22.1 293 110-430 10-342 (414)
20 2ykg_A Probable ATP-dependent 100.0 8E-44 2.7E-48 370.2 24.6 316 112-430 4-499 (696)
21 2va8_A SSO2462, SKI2-type heli 100.0 8.3E-43 2.8E-47 362.9 30.3 314 98-429 7-386 (715)
22 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-43 8.1E-48 357.5 24.0 310 118-430 4-491 (556)
23 2zj8_A DNA helicase, putative 100.0 2.3E-43 8E-48 366.9 24.0 308 100-428 2-364 (720)
24 2p6r_A Afuhel308 helicase; pro 100.0 2.1E-43 7.1E-48 366.3 20.8 307 100-428 2-365 (702)
25 3tbk_A RIG-I helicase domain; 100.0 9E-42 3.1E-46 345.7 31.3 308 120-431 3-491 (555)
26 3l9o_A ATP-dependent RNA helic 100.0 4.6E-43 1.6E-47 374.7 22.3 303 99-424 162-562 (1108)
27 1tf5_A Preprotein translocase 100.0 1.6E-42 5.4E-47 350.2 21.0 357 51-431 17-527 (844)
28 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-41 6E-46 356.1 27.2 311 117-430 244-732 (797)
29 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-41 7.9E-46 361.5 26.5 287 116-430 74-400 (1104)
30 4a2w_A RIG-I, retinoic acid in 100.0 7.3E-41 2.5E-45 355.0 24.2 312 116-430 243-732 (936)
31 2xgj_A ATP-dependent RNA helic 100.0 1.2E-39 4.2E-44 345.4 31.4 287 117-428 83-476 (1010)
32 3iuy_A Probable ATP-dependent 100.0 8.5E-40 2.9E-44 292.8 23.7 216 90-306 10-227 (228)
33 1wp9_A ATP-dependent RNA helic 100.0 3.7E-39 1.3E-43 321.0 29.5 299 121-429 9-456 (494)
34 1wrb_A DJVLGB; RNA helicase, D 100.0 1.2E-39 4.1E-44 296.6 22.9 234 86-320 8-251 (253)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 4.6E-41 1.6E-45 359.4 13.8 275 116-420 53-352 (1054)
36 4gl2_A Interferon-induced heli 100.0 2.1E-41 7.1E-46 352.2 10.7 307 120-429 6-501 (699)
37 2fsf_A Preprotein translocase 100.0 4.3E-40 1.5E-44 331.5 19.7 339 67-430 24-564 (853)
38 4f92_B U5 small nuclear ribonu 100.0 1.3E-39 4.5E-44 359.5 23.7 321 85-417 887-1263(1724)
39 3dkp_A Probable ATP-dependent 100.0 4.8E-39 1.6E-43 291.2 22.7 230 77-310 3-243 (245)
40 4f92_B U5 small nuclear ribonu 100.0 1E-39 3.5E-44 360.3 21.0 292 118-416 76-427 (1724)
41 4a4z_A Antiviral helicase SKI2 100.0 9.8E-39 3.4E-43 338.6 26.3 279 121-421 39-453 (997)
42 3bor_A Human initiation factor 100.0 9.2E-39 3.2E-43 287.6 22.1 212 92-308 23-235 (237)
43 3ber_A Probable ATP-dependent 100.0 1.9E-38 6.5E-43 287.3 23.7 208 96-308 40-248 (249)
44 3fmo_B ATP-dependent RNA helic 100.0 4E-38 1.4E-42 292.6 25.3 215 86-308 76-298 (300)
45 2oxc_A Probable ATP-dependent 100.0 3.6E-38 1.2E-42 282.5 23.7 210 91-306 16-227 (230)
46 1q0u_A Bstdead; DEAD protein, 100.0 1.9E-38 6.4E-43 282.2 21.6 208 97-309 2-213 (219)
47 1vec_A ATP-dependent RNA helic 100.0 8.5E-38 2.9E-42 275.4 25.1 202 99-305 3-205 (206)
48 2pl3_A Probable ATP-dependent 100.0 1.6E-37 5.6E-42 279.5 27.1 212 95-308 21-233 (236)
49 1nkt_A Preprotein translocase 100.0 3.8E-38 1.3E-42 317.7 25.1 280 116-410 107-524 (922)
50 2gxq_A Heat resistant RNA depe 100.0 2E-37 6.7E-42 273.3 25.5 204 100-307 2-205 (207)
51 1qde_A EIF4A, translation init 100.0 1.1E-37 3.9E-42 278.2 24.0 212 92-309 7-218 (224)
52 2eyq_A TRCF, transcription-rep 100.0 5.2E-37 1.8E-41 330.0 30.1 299 104-427 586-900 (1151)
53 3ly5_A ATP-dependent RNA helic 100.0 2.5E-37 8.7E-42 282.1 22.9 204 99-303 52-258 (262)
54 1gm5_A RECG; helicase, replica 100.0 2.9E-38 1E-42 325.1 17.7 294 108-426 356-674 (780)
55 2oca_A DAR protein, ATP-depend 100.0 1.8E-37 6.2E-42 310.8 21.7 292 120-429 112-435 (510)
56 1t6n_A Probable ATP-dependent 100.0 9.3E-37 3.2E-41 271.5 22.8 207 95-306 10-219 (220)
57 2whx_A Serine protease/ntpase/ 100.0 8.9E-38 3E-42 315.9 7.5 282 104-430 155-458 (618)
58 2xau_A PRE-mRNA-splicing facto 100.0 9E-36 3.1E-40 308.6 21.3 304 96-419 69-396 (773)
59 2fwr_A DNA repair protein RAD2 100.0 1.6E-36 5.3E-41 301.1 15.0 272 120-429 92-431 (472)
60 2jlq_A Serine protease subunit 100.0 5.1E-37 1.8E-41 301.5 11.2 268 118-430 1-291 (451)
61 3o8b_A HCV NS3 protease/helica 100.0 1.4E-35 4.6E-40 297.4 10.2 256 122-430 218-497 (666)
62 2wv9_A Flavivirin protease NS2 100.0 8.4E-36 2.9E-40 303.3 6.5 273 114-430 203-513 (673)
63 3h1t_A Type I site-specific re 100.0 3.6E-34 1.2E-38 291.6 16.8 293 121-429 178-536 (590)
64 1yks_A Genome polyprotein [con 100.0 1.6E-36 5.6E-41 296.6 -0.6 246 132-430 4-279 (440)
65 2v6i_A RNA helicase; membrane, 100.0 6.3E-34 2.2E-38 277.7 15.8 252 135-430 1-271 (431)
66 2z83_A Helicase/nucleoside tri 100.0 2.3E-34 7.7E-39 283.1 7.9 256 127-430 12-293 (459)
67 3rc3_A ATP-dependent RNA helic 100.0 2.8E-31 9.5E-36 269.3 20.2 245 131-419 150-398 (677)
68 1z63_A Helicase of the SNF2/RA 100.0 1.7E-30 5.8E-35 259.6 23.9 288 121-429 37-431 (500)
69 3dmq_A RNA polymerase-associat 100.0 5.6E-31 1.9E-35 279.8 16.8 298 120-429 152-593 (968)
70 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.8E-29 1.3E-33 263.9 24.7 297 120-433 270-689 (1038)
71 3mwy_W Chromo domain-containin 100.0 1.3E-28 4.3E-33 258.0 22.5 355 58-431 176-664 (800)
72 1z3i_X Similar to RAD54-like; 100.0 9.3E-28 3.2E-32 245.4 25.9 302 121-430 55-507 (644)
73 3jux_A Protein translocase sub 100.0 1.1E-26 3.6E-31 229.9 28.1 298 117-430 72-568 (822)
74 2ipc_A Preprotein translocase 100.0 3E-26 1E-30 230.7 27.9 130 117-259 76-215 (997)
75 3b6e_A Interferon-induced heli 99.9 1.5E-26 5.2E-31 204.8 12.5 166 118-286 30-216 (216)
76 3llm_A ATP-dependent RNA helic 99.9 1.9E-24 6.5E-29 193.7 16.6 180 110-303 50-232 (235)
77 1rif_A DAR protein, DNA helica 99.9 2E-25 7E-30 205.8 8.2 156 120-292 112-267 (282)
78 1c4o_A DNA nucleotide excision 99.9 9.7E-23 3.3E-27 208.2 19.1 145 276-429 379-531 (664)
79 3crv_A XPD/RAD3 related DNA he 99.9 1.4E-20 4.8E-25 189.1 29.3 281 121-423 3-475 (551)
80 2vl7_A XPD; helicase, unknown 99.9 1.4E-21 4.8E-26 195.7 21.8 127 117-259 4-188 (540)
81 2d7d_A Uvrabc system protein B 99.9 7.2E-22 2.5E-26 201.6 16.5 145 276-429 385-537 (661)
82 2fz4_A DNA repair protein RAD2 99.9 8.8E-21 3E-25 169.6 15.4 139 120-290 92-231 (237)
83 4a15_A XPD helicase, ATP-depen 99.8 1.2E-18 4.3E-23 176.3 20.8 83 120-209 2-88 (620)
84 2p6n_A ATP-dependent RNA helic 99.8 9.3E-20 3.2E-24 157.2 10.0 133 296-431 9-143 (191)
85 2hjv_A ATP-dependent RNA helic 99.8 8.9E-19 3E-23 147.4 13.7 118 314-432 6-125 (163)
86 1t5i_A C_terminal domain of A 99.8 1.3E-18 4.4E-23 147.6 12.6 113 316-429 4-118 (172)
87 2jgn_A DBX, DDX3, ATP-dependen 99.8 5E-19 1.7E-23 151.9 10.1 119 313-431 15-135 (185)
88 1fuk_A Eukaryotic initiation f 99.8 3.3E-18 1.1E-22 144.2 14.5 115 317-432 3-120 (165)
89 2rb4_A ATP-dependent RNA helic 99.8 4.3E-18 1.5E-22 145.0 11.7 115 315-430 5-128 (175)
90 3eaq_A Heat resistant RNA depe 99.7 1.5E-17 5.1E-22 146.0 11.1 111 319-430 7-119 (212)
91 3i32_A Heat resistant RNA depe 99.7 2.7E-17 9.2E-22 151.3 11.5 112 318-430 3-116 (300)
92 2yjt_D ATP-dependent RNA helic 99.5 2.7E-18 9.1E-23 145.5 0.0 115 317-432 3-120 (170)
93 1z5z_A Helicase of the SNF2/RA 99.5 9.3E-14 3.2E-18 126.1 11.3 108 325-432 92-205 (271)
94 1w36_D RECD, exodeoxyribonucle 99.1 1.8E-10 6.2E-15 116.5 9.7 146 123-286 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.6 1.6E-06 5.5E-11 84.8 19.1 69 117-192 21-94 (459)
96 3e1s_A Exodeoxyribonuclease V, 98.5 6E-07 2.1E-11 89.9 12.2 125 121-284 189-313 (574)
97 2gk6_A Regulator of nonsense t 98.5 1.9E-06 6.5E-11 87.5 15.2 70 119-195 178-247 (624)
98 4b3f_X DNA-binding protein smu 98.5 3E-07 1E-11 94.0 8.5 68 121-196 189-257 (646)
99 2xzl_A ATP-dependent helicase 98.4 1.9E-06 6.5E-11 89.6 12.3 71 119-196 358-428 (802)
100 3lfu_A DNA helicase II; SF1 he 98.4 3.3E-05 1.1E-09 79.0 21.4 71 120-196 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.4 4.4E-06 1.5E-10 86.8 14.4 71 119-196 354-424 (800)
102 3vkw_A Replicase large subunit 97.4 0.00051 1.7E-08 65.6 9.9 107 137-285 162-268 (446)
103 2o0j_A Terminase, DNA packagin 97.4 0.00027 9.3E-09 66.6 8.0 70 121-196 163-232 (385)
104 2orw_A Thymidine kinase; TMTK, 97.4 0.0002 6.9E-09 60.4 5.8 40 135-182 2-41 (184)
105 3cpe_A Terminase, DNA packagin 97.3 0.003 1E-07 63.5 14.0 73 121-199 163-235 (592)
106 3ec2_A DNA replication protein 97.2 0.0011 3.8E-08 55.5 8.3 30 123-152 16-54 (180)
107 2b8t_A Thymidine kinase; deoxy 97.2 0.00056 1.9E-08 59.4 6.5 91 135-258 11-101 (223)
108 1xx6_A Thymidine kinase; NESG, 97.2 0.00076 2.6E-08 57.1 7.1 40 135-182 7-46 (191)
109 3te6_A Regulatory protein SIR3 97.1 0.004 1.4E-07 57.1 11.9 27 136-163 45-71 (318)
110 2j9r_A Thymidine kinase; TK1, 97.1 0.00053 1.8E-08 58.7 5.0 39 136-182 28-66 (214)
111 2kjq_A DNAA-related protein; s 96.9 0.00041 1.4E-08 56.3 3.0 18 135-152 35-52 (149)
112 2orv_A Thymidine kinase; TP4A 96.9 0.0028 9.5E-08 54.8 7.7 40 135-182 18-57 (234)
113 3kl4_A SRP54, signal recogniti 96.8 0.0036 1.2E-07 59.8 8.9 55 245-299 178-235 (433)
114 1l8q_A Chromosomal replication 96.7 0.008 2.7E-07 55.5 10.2 17 136-152 37-53 (324)
115 3hgt_A HDA1 complex subunit 3; 96.7 0.0071 2.4E-07 55.1 9.3 95 326-425 106-208 (328)
116 1w4r_A Thymidine kinase; type 96.6 0.0032 1.1E-07 53.0 6.2 39 135-181 19-57 (195)
117 1a5t_A Delta prime, HOLB; zinc 96.6 0.0065 2.2E-07 56.4 8.8 40 122-162 3-49 (334)
118 1uaa_A REP helicase, protein ( 96.6 0.0028 9.7E-08 64.9 6.9 71 121-197 2-72 (673)
119 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0026 8.8E-08 54.4 5.2 40 135-182 27-66 (219)
120 1pjr_A PCRA; DNA repair, DNA r 96.5 0.007 2.4E-07 62.5 9.0 71 120-196 10-80 (724)
121 2zpa_A Uncharacterized protein 96.5 0.0087 3E-07 60.1 9.1 112 121-287 175-288 (671)
122 1d2n_A N-ethylmaleimide-sensit 96.4 0.034 1.2E-06 49.7 12.3 17 137-153 65-81 (272)
123 2p65_A Hypothetical protein PF 96.3 0.019 6.5E-07 47.7 9.5 17 136-152 43-59 (187)
124 3u4q_A ATP-dependent helicase/ 96.3 0.0071 2.4E-07 66.2 8.4 70 121-194 10-79 (1232)
125 2v1u_A Cell division control p 96.2 0.014 4.7E-07 55.0 9.0 17 136-152 44-60 (387)
126 2chg_A Replication factor C sm 96.2 0.077 2.6E-06 45.2 13.1 39 245-284 101-139 (226)
127 1g5t_A COB(I)alamin adenosyltr 96.2 0.037 1.3E-06 46.5 10.3 141 137-296 29-172 (196)
128 2z4s_A Chromosomal replication 96.2 0.031 1E-06 53.9 11.3 40 246-285 194-235 (440)
129 3dm5_A SRP54, signal recogniti 96.2 0.016 5.5E-07 55.4 9.0 131 137-298 101-235 (443)
130 1jbk_A CLPB protein; beta barr 96.2 0.12 4.2E-06 42.7 13.8 17 136-152 43-59 (195)
131 2w58_A DNAI, primosome compone 96.2 0.034 1.2E-06 47.2 10.3 16 137-152 55-70 (202)
132 3bos_A Putative DNA replicatio 96.2 0.0083 2.8E-07 52.4 6.5 18 135-152 51-68 (242)
133 3h4m_A Proteasome-activating n 96.0 0.045 1.6E-06 49.2 10.7 52 98-152 13-67 (285)
134 3u61_B DNA polymerase accessor 96.0 0.032 1.1E-06 51.3 9.7 40 245-284 104-143 (324)
135 1fnn_A CDC6P, cell division co 95.9 0.017 5.8E-07 54.5 7.9 15 138-152 46-60 (389)
136 3syl_A Protein CBBX; photosynt 95.9 0.014 4.9E-07 53.2 7.0 18 136-153 67-84 (309)
137 2qgz_A Helicase loader, putati 95.7 0.038 1.3E-06 50.5 9.1 17 136-152 152-168 (308)
138 1gm5_A RECG; helicase, replica 95.6 0.032 1.1E-06 57.7 9.0 85 334-418 407-498 (780)
139 2qby_B CDC6 homolog 3, cell di 95.6 0.055 1.9E-06 50.9 9.9 17 136-152 45-61 (384)
140 2qby_A CDC6 homolog 1, cell di 95.4 0.055 1.9E-06 50.7 9.3 17 136-152 45-61 (386)
141 2dr3_A UPF0273 protein PH0284; 95.3 0.086 3E-06 46.0 9.6 52 135-195 22-73 (247)
142 2gno_A DNA polymerase III, gam 95.2 0.094 3.2E-06 47.7 9.8 40 244-284 80-119 (305)
143 3oiy_A Reverse gyrase helicase 95.2 0.07 2.4E-06 50.8 9.3 65 338-402 58-125 (414)
144 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.41 1.4E-05 43.8 14.1 50 97-152 7-61 (322)
145 4b4t_M 26S protease regulatory 95.1 0.13 4.3E-06 49.2 10.7 55 95-152 174-231 (434)
146 1njg_A DNA polymerase III subu 94.9 0.35 1.2E-05 41.6 12.5 15 138-152 47-61 (250)
147 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.15 5.2E-06 43.9 10.0 18 135-152 22-39 (235)
148 3pfi_A Holliday junction ATP-d 94.9 0.089 3E-06 48.6 8.9 16 137-152 56-71 (338)
149 4b4t_J 26S protease regulatory 94.8 0.25 8.5E-06 46.5 11.6 53 97-152 143-198 (405)
150 1iqp_A RFCS; clamp loader, ext 94.8 0.11 3.6E-06 47.6 9.1 39 245-284 109-147 (327)
151 1sxj_E Activator 1 40 kDa subu 94.6 0.091 3.1E-06 48.8 8.2 42 245-287 133-174 (354)
152 3eie_A Vacuolar protein sortin 94.5 0.12 4.1E-06 47.4 8.7 49 98-152 14-67 (322)
153 1sxj_D Activator 1 41 kDa subu 94.5 0.24 8.3E-06 45.7 10.8 39 245-284 132-170 (353)
154 3cf0_A Transitional endoplasmi 94.4 0.12 4.1E-06 46.9 8.3 53 97-152 10-65 (301)
155 1jr3_A DNA polymerase III subu 94.3 0.31 1.1E-05 45.4 11.2 40 244-284 117-156 (373)
156 2px0_A Flagellar biosynthesis 94.1 0.17 5.8E-06 45.8 8.5 19 135-153 104-122 (296)
157 1sxj_A Activator 1 95 kDa subu 94.0 0.15 5E-06 50.3 8.6 41 245-287 147-189 (516)
158 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.4 1.4E-05 42.1 10.5 17 136-152 39-55 (262)
159 1sxj_C Activator 1 40 kDa subu 93.9 0.2 6.9E-06 46.2 8.9 39 245-284 109-147 (340)
160 3uk6_A RUVB-like 2; hexameric 93.9 0.88 3E-05 42.3 13.4 17 136-152 70-86 (368)
161 1hqc_A RUVB; extended AAA-ATPa 93.8 0.14 4.7E-06 46.9 7.4 17 136-152 38-54 (324)
162 2qp9_X Vacuolar protein sortin 93.6 0.48 1.6E-05 44.1 10.9 17 136-152 84-100 (355)
163 3vfd_A Spastin; ATPase, microt 93.6 0.22 7.4E-06 47.1 8.6 18 136-153 148-165 (389)
164 2p6n_A ATP-dependent RNA helic 93.5 0.56 1.9E-05 39.2 10.3 73 172-254 54-130 (191)
165 4b4t_H 26S protease regulatory 93.5 0.67 2.3E-05 44.4 11.7 54 96-152 203-259 (467)
166 4b4t_K 26S protease regulatory 93.5 0.64 2.2E-05 44.2 11.5 53 97-152 167-222 (428)
167 1w5s_A Origin recognition comp 93.4 0.19 6.4E-06 47.6 8.0 17 136-152 50-68 (412)
168 1ls1_A Signal recognition part 93.4 0.63 2.2E-05 42.0 11.1 53 245-297 179-232 (295)
169 3pvs_A Replication-associated 93.4 0.19 6.5E-06 48.4 7.9 16 137-152 51-66 (447)
170 2q6t_A DNAB replication FORK h 93.4 0.23 8E-06 47.8 8.6 50 135-192 199-248 (444)
171 2r6a_A DNAB helicase, replicat 93.3 0.29 1E-05 47.2 9.2 39 135-180 202-240 (454)
172 2ehv_A Hypothetical protein PH 93.3 0.076 2.6E-06 46.5 4.7 43 245-287 134-181 (251)
173 4ddu_A Reverse gyrase; topoiso 93.3 0.22 7.5E-06 53.7 8.9 64 339-402 116-182 (1104)
174 3d8b_A Fidgetin-like protein 1 93.2 0.51 1.8E-05 43.9 10.4 17 136-152 117-133 (357)
175 4b4t_I 26S protease regulatory 93.2 0.72 2.5E-05 43.7 11.2 17 136-152 216-232 (437)
176 1sxj_B Activator 1 37 kDa subu 93.2 0.21 7.2E-06 45.5 7.6 38 246-284 107-144 (323)
177 3hu3_A Transitional endoplasmi 93.1 0.35 1.2E-05 47.1 9.4 42 247-288 298-349 (489)
178 2rb4_A ATP-dependent RNA helic 93.1 0.51 1.7E-05 38.7 9.3 72 172-253 34-109 (175)
179 2l8b_A Protein TRAI, DNA helic 92.7 0.1 3.5E-06 43.0 4.1 120 123-286 36-158 (189)
180 4a1f_A DNAB helicase, replicat 92.7 0.22 7.7E-06 45.8 6.9 49 135-192 45-93 (338)
181 1nlf_A Regulatory protein REPA 92.6 0.69 2.3E-05 41.2 10.1 23 133-155 27-49 (279)
182 1oyw_A RECQ helicase, ATP-depe 92.4 0.51 1.8E-05 46.4 9.6 60 343-402 64-123 (523)
183 3bh0_A DNAB-like replicative h 92.3 0.37 1.3E-05 44.0 7.9 51 135-194 67-117 (315)
184 2eyq_A TRCF, transcription-rep 92.2 0.49 1.7E-05 51.3 9.9 78 339-416 647-731 (1151)
185 3m6a_A ATP-dependent protease 92.1 0.17 5.8E-06 50.1 5.7 18 135-152 107-124 (543)
186 2hjv_A ATP-dependent RNA helic 92.0 0.6 2.1E-05 37.8 8.1 74 172-255 35-112 (163)
187 2fna_A Conserved hypothetical 92.0 5.8 0.0002 36.1 16.0 53 229-286 123-178 (357)
188 1n0w_A DNA repair protein RAD5 91.9 0.82 2.8E-05 39.5 9.5 20 135-154 23-42 (243)
189 2eyu_A Twitching motility prot 91.7 0.14 4.7E-06 45.5 4.1 20 133-152 22-41 (261)
190 1vma_A Cell division protein F 91.6 2.3 7.9E-05 38.4 12.2 17 136-152 104-120 (306)
191 3cmu_A Protein RECA, recombina 91.5 0.25 8.6E-06 55.9 6.8 40 135-182 1426-1465(2050)
192 3hjh_A Transcription-repair-co 91.5 1 3.6E-05 43.6 10.4 53 135-198 13-65 (483)
193 2v1x_A ATP-dependent DNA helic 91.4 0.55 1.9E-05 47.0 8.6 60 343-402 83-144 (591)
194 2zan_A Vacuolar protein sortin 91.3 0.53 1.8E-05 45.3 8.2 53 97-152 129-183 (444)
195 1fuk_A Eukaryotic initiation f 91.2 1.4 4.7E-05 35.6 9.6 74 172-255 30-107 (165)
196 2zr9_A Protein RECA, recombina 91.2 0.15 5.1E-06 47.4 3.9 39 135-181 60-98 (349)
197 2ffh_A Protein (FFH); SRP54, s 90.8 2.5 8.5E-05 40.1 12.0 17 136-152 98-114 (425)
198 3e70_C DPA, signal recognition 90.7 0.89 3E-05 41.7 8.6 54 246-299 211-265 (328)
199 3co5_A Putative two-component 90.6 0.19 6.7E-06 39.8 3.7 20 133-152 24-43 (143)
200 2chq_A Replication factor C sm 90.6 0.19 6.4E-06 45.7 4.1 15 138-152 40-54 (319)
201 3n70_A Transport activator; si 90.5 0.21 7E-06 39.8 3.7 20 133-152 21-40 (145)
202 3eaq_A Heat resistant RNA depe 90.3 0.89 3.1E-05 38.7 7.9 71 172-252 31-105 (212)
203 3jvv_A Twitching mobility prot 90.3 0.52 1.8E-05 43.8 6.8 18 135-152 122-139 (356)
204 1qvr_A CLPB protein; coiled co 90.2 0.46 1.6E-05 49.9 7.1 17 136-152 191-207 (854)
205 1p9r_A General secretion pathw 90.0 0.43 1.5E-05 45.4 6.1 18 135-152 166-183 (418)
206 1t5i_A C_terminal domain of A 89.9 2.5 8.7E-05 34.4 10.1 75 172-256 31-109 (172)
207 1xp8_A RECA protein, recombina 89.7 0.73 2.5E-05 42.9 7.3 39 135-181 73-111 (366)
208 2jgn_A DBX, DDX3, ATP-dependen 89.6 1.1 3.8E-05 37.1 7.7 73 172-254 46-122 (185)
209 2ce7_A Cell division protein F 89.6 1.6 5.5E-05 42.2 9.8 16 137-152 50-65 (476)
210 2z43_A DNA repair and recombin 89.3 0.54 1.9E-05 43.0 6.0 58 136-195 107-165 (324)
211 1e9r_A Conjugal transfer prote 88.8 0.38 1.3E-05 46.1 4.8 44 135-186 52-95 (437)
212 1r6b_X CLPA protein; AAA+, N-t 88.8 1.9 6.4E-05 44.5 10.3 17 136-152 207-223 (758)
213 3pxi_A Negative regulator of g 88.7 2.1 7E-05 44.3 10.6 16 138-153 523-538 (758)
214 2yhs_A FTSY, cell division pro 88.6 1.8 6.3E-05 41.8 9.3 53 246-298 375-434 (503)
215 1t6n_A Probable ATP-dependent 88.3 1 3.6E-05 38.2 6.9 55 345-402 83-142 (220)
216 1pzn_A RAD51, DNA repair and r 88.3 1.5 5.2E-05 40.5 8.4 17 136-152 131-147 (349)
217 3cmw_A Protein RECA, recombina 88.0 0.77 2.6E-05 51.3 7.0 119 136-289 1431-1569(1706)
218 3b85_A Phosphate starvation-in 88.0 0.68 2.3E-05 39.3 5.3 30 123-152 9-38 (208)
219 3cf2_A TER ATPase, transitiona 88.0 0.89 3.1E-05 46.9 7.1 54 96-152 471-527 (806)
220 2i4i_A ATP-dependent RNA helic 87.9 2.2 7.5E-05 40.1 9.6 71 172-252 276-350 (417)
221 3io5_A Recombination and repai 87.7 0.88 3E-05 41.3 6.0 43 136-185 29-71 (333)
222 2j37_W Signal recognition part 87.6 2.4 8.1E-05 41.3 9.5 16 138-153 103-118 (504)
223 2oap_1 GSPE-2, type II secreti 87.5 0.6 2.1E-05 45.7 5.3 39 112-152 237-276 (511)
224 1j8m_F SRP54, signal recogniti 87.2 5.8 0.0002 35.6 11.3 53 245-297 179-234 (297)
225 1ypw_A Transitional endoplasmi 87.2 2.4 8.2E-05 44.0 9.9 18 135-152 237-254 (806)
226 3ber_A Probable ATP-dependent 87.1 2.4 8.3E-05 36.9 8.7 55 344-402 111-169 (249)
227 3gk5_A Uncharacterized rhodane 86.5 0.67 2.3E-05 34.6 4.0 44 335-378 46-89 (108)
228 3cmu_A Protein RECA, recombina 86.4 1.5 5.3E-05 49.7 8.2 47 134-189 1079-1125(2050)
229 3i32_A Heat resistant RNA depe 86.3 1.9 6.5E-05 38.9 7.6 74 172-255 28-105 (300)
230 3g5j_A Putative ATP/GTP bindin 85.1 1.1 3.9E-05 34.5 4.9 48 333-380 77-126 (134)
231 2gza_A Type IV secretion syste 85.0 0.58 2E-05 43.6 3.6 26 133-160 172-197 (361)
232 3i5x_A ATP-dependent RNA helic 84.9 8.6 0.00029 37.8 12.4 77 172-255 339-419 (563)
233 1kgd_A CASK, peripheral plasma 84.8 0.63 2.2E-05 38.4 3.4 18 135-152 4-21 (180)
234 2oxc_A Probable ATP-dependent 84.8 1.4 4.8E-05 37.8 5.8 54 344-402 92-150 (230)
235 3cf2_A TER ATPase, transitiona 84.8 3.1 0.00011 42.9 9.1 16 137-152 239-254 (806)
236 3u4q_B ATP-dependent helicase/ 84.7 2.4 8.1E-05 46.2 8.7 87 139-256 4-91 (1166)
237 3fe2_A Probable ATP-dependent 84.5 2.3 7.9E-05 36.7 7.1 55 344-402 102-160 (242)
238 4f4c_A Multidrug resistance pr 84.5 1.1 3.8E-05 49.3 6.1 41 244-284 1233-1273(1321)
239 1lvg_A Guanylate kinase, GMP k 84.1 0.74 2.5E-05 38.7 3.6 18 135-152 3-20 (198)
240 2zts_A Putative uncharacterize 83.8 0.78 2.7E-05 39.8 3.8 53 135-195 29-81 (251)
241 4ag6_A VIRB4 ATPase, type IV s 83.2 1.1 3.6E-05 42.3 4.6 42 135-184 34-75 (392)
242 3fht_A ATP-dependent RNA helic 82.8 3.3 0.00011 38.7 8.0 73 172-254 266-342 (412)
243 2jtq_A Phage shock protein E; 82.8 3.1 0.00011 29.1 6.0 44 336-379 31-76 (85)
244 3sqw_A ATP-dependent RNA helic 82.8 12 0.00041 37.0 12.4 78 172-256 288-369 (579)
245 2pl3_A Probable ATP-dependent 82.6 3.7 0.00013 35.2 7.6 55 343-402 96-154 (236)
246 1tf7_A KAIC; homohexamer, hexa 82.4 7.5 0.00026 38.0 10.5 126 134-287 279-417 (525)
247 2pt7_A CAG-ALFA; ATPase, prote 82.3 0.66 2.3E-05 42.6 2.7 26 133-160 168-193 (330)
248 1xti_A Probable ATP-dependent 82.2 2.5 8.7E-05 39.2 6.9 56 344-402 76-136 (391)
249 1yks_A Genome polyprotein [con 82.2 2.1 7.3E-05 40.9 6.4 68 172-251 177-245 (440)
250 3pey_A ATP-dependent RNA helic 82.1 4.2 0.00014 37.7 8.4 75 172-256 243-321 (395)
251 3flh_A Uncharacterized protein 82.0 1.1 3.9E-05 34.2 3.6 43 336-378 63-107 (124)
252 4b4t_L 26S protease subunit RP 82.0 1.2 4.1E-05 42.5 4.4 17 136-152 215-231 (437)
253 3vaa_A Shikimate kinase, SK; s 82.0 0.87 3E-05 38.2 3.2 18 135-152 24-41 (199)
254 2xxa_A Signal recognition part 82.0 11 0.00038 35.7 11.3 17 137-153 101-117 (433)
255 1hv8_A Putative ATP-dependent 81.9 4.3 0.00015 37.2 8.3 73 172-254 238-314 (367)
256 3tr0_A Guanylate kinase, GMP k 81.5 1 3.4E-05 37.8 3.4 18 135-152 6-23 (205)
257 1gmx_A GLPE protein; transfera 81.4 1.8 6E-05 32.1 4.4 44 336-379 50-94 (108)
258 2ewv_A Twitching motility prot 81.3 0.79 2.7E-05 42.9 2.9 19 134-152 134-152 (372)
259 3a8t_A Adenylate isopentenyltr 81.1 0.78 2.7E-05 42.0 2.7 17 136-152 40-56 (339)
260 2db3_A ATP-dependent RNA helic 81.0 5 0.00017 38.1 8.6 68 175-252 303-374 (434)
261 1z6g_A Guanylate kinase; struc 81.0 1.2 4E-05 38.1 3.7 19 134-152 21-39 (218)
262 3bor_A Human initiation factor 81.0 4.5 0.00015 34.7 7.5 56 343-401 97-156 (237)
263 3lda_A DNA repair protein RAD5 80.8 3.2 0.00011 39.0 6.9 18 136-153 178-195 (400)
264 3iij_A Coilin-interacting nucl 80.1 1 3.5E-05 36.9 2.9 19 134-152 9-27 (180)
265 3tau_A Guanylate kinase, GMP k 80.1 1.1 3.7E-05 37.9 3.2 18 135-152 7-24 (208)
266 2d7d_A Uvrabc system protein B 80.1 11 0.00037 38.1 11.0 77 172-258 445-525 (661)
267 3a00_A Guanylate kinase, GMP k 80.1 1.3 4.4E-05 36.7 3.6 17 136-152 1-17 (186)
268 1rj9_A FTSY, signal recognitio 80.0 1.8 6E-05 39.2 4.7 26 135-162 101-126 (304)
269 2bjv_A PSP operon transcriptio 79.9 1.4 4.8E-05 38.7 4.0 18 135-152 28-45 (265)
270 3trf_A Shikimate kinase, SK; a 79.7 1.1 3.9E-05 36.8 3.1 18 136-153 5-22 (185)
271 2j0s_A ATP-dependent RNA helic 79.7 5.3 0.00018 37.3 8.2 73 172-254 276-352 (410)
272 3iuy_A Probable ATP-dependent 79.6 4.9 0.00017 34.1 7.3 56 343-402 93-151 (228)
273 1vec_A ATP-dependent RNA helic 79.6 3.7 0.00013 34.2 6.4 55 344-402 71-130 (206)
274 3ney_A 55 kDa erythrocyte memb 79.6 1.3 4.5E-05 37.1 3.4 18 135-152 18-35 (197)
275 3hws_A ATP-dependent CLP prote 79.5 3.3 0.00011 38.3 6.5 18 135-152 50-67 (363)
276 1qhx_A CPT, protein (chloramph 79.5 0.9 3.1E-05 37.1 2.4 17 136-152 3-19 (178)
277 1znw_A Guanylate kinase, GMP k 79.4 1.3 4.6E-05 37.3 3.5 21 132-152 16-36 (207)
278 1s2m_A Putative ATP-dependent 79.3 5.2 0.00018 37.2 8.0 73 172-254 258-334 (400)
279 2qmh_A HPR kinase/phosphorylas 79.2 1 3.5E-05 37.8 2.6 18 135-152 33-50 (205)
280 1s96_A Guanylate kinase, GMP k 79.0 1.4 4.8E-05 37.7 3.5 27 133-161 13-39 (219)
281 2x8a_A Nuclear valosin-contain 78.9 1.1 3.8E-05 39.8 2.9 53 97-152 5-60 (274)
282 1zp6_A Hypothetical protein AT 78.9 0.91 3.1E-05 37.6 2.3 19 134-152 7-25 (191)
283 3nbx_X ATPase RAVA; AAA+ ATPas 78.8 2.5 8.4E-05 41.2 5.6 26 127-152 32-57 (500)
284 3exa_A TRNA delta(2)-isopenten 78.6 1.1 3.6E-05 40.7 2.7 16 137-152 4-19 (322)
285 3iwh_A Rhodanese-like domain p 78.5 1.3 4.5E-05 32.7 2.8 38 341-378 53-90 (103)
286 1c4o_A DNA nucleotide excision 78.3 14 0.00047 37.4 11.1 76 172-257 439-518 (664)
287 1lv7_A FTSH; alpha/beta domain 78.2 3.7 0.00013 35.8 6.1 17 136-152 45-61 (257)
288 2j41_A Guanylate kinase; GMP, 78.1 1.3 4.5E-05 37.0 3.1 19 134-152 4-22 (207)
289 2cvh_A DNA repair and recombin 78.0 2.2 7.5E-05 36.0 4.5 20 135-154 19-38 (220)
290 1kag_A SKI, shikimate kinase I 77.9 1.5 5.3E-05 35.4 3.4 17 136-152 4-20 (173)
291 4akg_A Glutathione S-transfera 77.9 3 0.0001 49.0 6.7 49 106-155 890-942 (2695)
292 1wp9_A ATP-dependent RNA helic 77.8 12 0.0004 35.5 10.2 96 145-256 340-447 (494)
293 3foz_A TRNA delta(2)-isopenten 77.6 1.3 4.4E-05 40.1 2.9 15 138-152 12-26 (316)
294 2qor_A Guanylate kinase; phosp 77.6 1.4 4.7E-05 37.1 3.0 20 133-152 9-28 (204)
295 2gxq_A Heat resistant RNA depe 77.5 4.6 0.00016 33.6 6.4 55 344-402 72-128 (207)
296 4a74_A DNA repair and recombin 77.5 1.9 6.6E-05 36.7 4.0 18 135-152 24-41 (231)
297 3foj_A Uncharacterized protein 77.4 1.4 4.8E-05 32.2 2.7 38 341-378 53-90 (100)
298 3eme_A Rhodanese-like domain p 77.3 1.5 5.1E-05 32.2 2.8 37 342-378 54-90 (103)
299 3lw7_A Adenylate kinase relate 77.2 1.1 3.7E-05 36.3 2.2 16 138-153 3-18 (179)
300 2ze6_A Isopentenyl transferase 77.2 1.3 4.5E-05 38.8 2.9 16 138-153 3-18 (253)
301 2r8r_A Sensor protein; KDPD, P 77.0 2.7 9.2E-05 36.0 4.6 17 138-154 8-24 (228)
302 3b9q_A Chloroplast SRP recepto 76.8 1.7 5.8E-05 39.2 3.6 18 135-152 99-116 (302)
303 1ofh_A ATP-dependent HSL prote 76.8 5.6 0.00019 35.4 7.2 17 136-152 50-66 (310)
304 1cr0_A DNA primase/helicase; R 76.6 2.7 9.1E-05 37.7 4.8 20 134-153 33-52 (296)
305 2yjt_D ATP-dependent RNA helic 78.0 0.53 1.8E-05 38.4 0.0 73 172-254 30-106 (170)
306 1y63_A LMAJ004144AAA protein; 76.0 1.7 5.8E-05 35.8 3.1 18 135-152 9-26 (184)
307 1u0j_A DNA replication protein 76.0 5.7 0.0002 34.9 6.6 44 107-153 72-121 (267)
308 1u94_A RECA protein, recombina 76.0 2.5 8.7E-05 39.1 4.6 39 135-181 62-100 (356)
309 2r44_A Uncharacterized protein 75.9 1.7 5.9E-05 39.6 3.4 21 132-152 42-62 (331)
310 1kht_A Adenylate kinase; phosp 75.4 1.4 4.7E-05 36.3 2.4 17 136-152 3-19 (192)
311 3c8u_A Fructokinase; YP_612366 75.3 1.7 6E-05 36.6 3.1 18 135-152 21-38 (208)
312 4gp7_A Metallophosphoesterase; 75.3 1.2 4.1E-05 36.3 1.9 18 135-152 8-25 (171)
313 1ojl_A Transcriptional regulat 75.3 1.9 6.4E-05 39.0 3.4 18 135-152 24-41 (304)
314 1gku_B Reverse gyrase, TOP-RG; 75.1 4.6 0.00016 43.3 6.9 58 343-402 98-163 (1054)
315 1ex7_A Guanylate kinase; subst 75.0 1.6 5.3E-05 36.3 2.6 16 137-152 2-17 (186)
316 3ipz_A Monothiol glutaredoxin- 74.9 15 0.00051 27.0 7.9 66 335-400 8-79 (109)
317 3hr8_A Protein RECA; alpha and 74.9 2.6 8.9E-05 39.0 4.3 42 135-184 60-101 (356)
318 2i3b_A HCR-ntpase, human cance 74.8 2.4 8.2E-05 35.3 3.7 41 244-287 103-145 (189)
319 1ixz_A ATP-dependent metallopr 74.6 1.4 4.7E-05 38.5 2.3 52 97-152 11-65 (254)
320 1wrb_A DJVLGB; RNA helicase, D 74.6 9.6 0.00033 32.9 7.9 54 345-402 101-158 (253)
321 1ye8_A Protein THEP1, hypothet 74.6 2.2 7.5E-05 35.1 3.4 15 138-152 2-16 (178)
322 1qde_A EIF4A, translation init 74.6 2 6.8E-05 36.5 3.3 55 343-402 81-139 (224)
323 3crm_A TRNA delta(2)-isopenten 74.3 1.7 5.9E-05 39.5 2.9 17 137-153 6-22 (323)
324 2wv9_A Flavivirin protease NS2 74.3 5.7 0.0002 40.2 7.0 68 172-251 410-478 (673)
325 4eun_A Thermoresistant glucoki 74.2 2 7E-05 35.9 3.2 18 135-152 28-45 (200)
326 1f2t_A RAD50 ABC-ATPase; DNA d 74.2 2.3 7.9E-05 33.8 3.3 15 138-152 25-39 (149)
327 2l82_A Designed protein OR32; 74.1 13 0.00045 27.0 6.9 46 347-392 5-50 (162)
328 3kta_A Chromosome segregation 73.9 2.1 7.3E-05 35.0 3.2 22 138-161 28-49 (182)
329 3b9p_A CG5977-PA, isoform A; A 73.8 1.8 6.3E-05 38.7 3.0 17 136-152 54-70 (297)
330 2xau_A PRE-mRNA-splicing facto 73.8 17 0.0006 37.4 10.6 75 172-252 303-393 (773)
331 2v9p_A Replication protein E1; 73.8 2.1 7.2E-05 38.6 3.3 26 135-162 125-150 (305)
332 3tif_A Uncharacterized ABC tra 73.6 1.7 5.8E-05 37.6 2.6 17 135-151 30-46 (235)
333 3cm0_A Adenylate kinase; ATP-b 73.5 1.5 5.1E-05 36.0 2.2 19 135-153 3-21 (186)
334 3nwj_A ATSK2; P loop, shikimat 73.5 2.4 8.2E-05 37.1 3.5 18 135-152 47-64 (250)
335 1xjc_A MOBB protein homolog; s 73.4 3.8 0.00013 33.3 4.5 24 138-162 6-29 (169)
336 2og2_A Putative signal recogni 73.3 2.3 7.9E-05 39.4 3.5 17 136-152 157-173 (359)
337 1htw_A HI0065; nucleotide-bind 73.2 2 6.7E-05 34.6 2.7 27 134-162 31-57 (158)
338 3kb2_A SPBC2 prophage-derived 72.6 2.1 7.2E-05 34.5 2.8 15 138-152 3-17 (173)
339 3bgw_A DNAB-like replicative h 72.5 3.8 0.00013 39.2 5.0 50 135-193 196-245 (444)
340 1ly1_A Polynucleotide kinase; 72.5 1.7 5.7E-05 35.4 2.2 15 138-152 4-18 (181)
341 2v6i_A RNA helicase; membrane, 72.5 5.2 0.00018 38.0 5.9 68 172-250 171-238 (431)
342 1sky_E F1-ATPase, F1-ATP synth 72.3 8.7 0.0003 36.8 7.3 20 133-152 148-167 (473)
343 1zuh_A Shikimate kinase; alpha 72.2 2.3 7.8E-05 34.3 2.9 19 136-154 7-25 (168)
344 1w36_B RECB, exodeoxyribonucle 72.1 6.7 0.00023 42.7 7.3 58 138-195 18-79 (1180)
345 1nij_A Hypothetical protein YJ 72.0 2.7 9.2E-05 38.2 3.6 15 138-152 6-20 (318)
346 3hix_A ALR3790 protein; rhodan 71.9 3.2 0.00011 30.6 3.5 39 340-378 48-87 (106)
347 1knq_A Gluconate kinase; ALFA/ 71.9 2.1 7.1E-05 34.8 2.6 17 136-152 8-24 (175)
348 3d3q_A TRNA delta(2)-isopenten 71.8 2.1 7.3E-05 39.2 2.9 16 138-153 9-24 (340)
349 1fuu_A Yeast initiation factor 71.7 7.8 0.00027 35.8 7.0 55 343-402 88-146 (394)
350 2c9o_A RUVB-like 1; hexameric 71.7 4 0.00014 39.2 5.0 18 136-153 63-80 (456)
351 3uie_A Adenylyl-sulfate kinase 71.5 2.1 7.3E-05 35.7 2.7 19 134-152 23-41 (200)
352 3zyw_A Glutaredoxin-3; metal b 71.4 18 0.0006 26.8 7.6 66 335-400 6-77 (111)
353 1tq1_A AT5G66040, senescence-a 71.4 2.4 8.1E-05 32.7 2.7 39 341-379 79-118 (129)
354 1iy2_A ATP-dependent metallopr 71.4 1.8 6.1E-05 38.4 2.2 16 137-152 74-89 (278)
355 2c95_A Adenylate kinase 1; tra 71.4 2.8 9.5E-05 34.6 3.4 19 134-152 7-25 (196)
356 2yvu_A Probable adenylyl-sulfa 71.2 3.1 0.0001 34.2 3.5 19 135-153 12-30 (186)
357 2k0z_A Uncharacterized protein 71.1 7.2 0.00025 28.8 5.3 39 341-379 53-91 (110)
358 3tbk_A RIG-I helicase domain; 71.0 4.7 0.00016 39.4 5.5 55 344-402 52-110 (555)
359 2cbz_A Multidrug resistance-as 70.8 2.1 7.3E-05 37.0 2.6 17 135-151 30-46 (237)
360 2ius_A DNA translocase FTSK; n 70.7 6 0.00021 38.5 5.9 23 136-159 167-189 (512)
361 4a2q_A RIG-I, retinoic acid in 70.6 7.9 0.00027 40.1 7.3 55 344-402 296-354 (797)
362 2fsf_A Preprotein translocase 70.5 10 0.00035 39.1 7.7 62 335-402 106-171 (853)
363 1sgw_A Putative ABC transporte 70.4 2.4 8.1E-05 36.1 2.7 17 135-151 34-50 (214)
364 1q0u_A Bstdead; DEAD protein, 70.4 2.5 8.7E-05 35.7 2.9 55 344-402 72-134 (219)
365 4f4c_A Multidrug resistance pr 70.3 7.1 0.00024 43.0 7.0 41 244-284 570-610 (1321)
366 3t15_A Ribulose bisphosphate c 70.1 2.4 8.3E-05 38.0 2.9 16 137-152 37-52 (293)
367 2jlq_A Serine protease subunit 70.1 8.4 0.00029 36.8 6.8 68 172-251 188-256 (451)
368 1wv9_A Rhodanese homolog TT165 70.0 3.5 0.00012 29.5 3.2 37 342-379 52-88 (94)
369 4a2p_A RIG-I, retinoic acid in 69.9 6.3 0.00022 38.5 6.1 55 344-402 55-113 (556)
370 3nwn_A Kinesin-like protein KI 69.8 3.1 0.00011 38.4 3.6 24 129-152 96-121 (359)
371 2v54_A DTMP kinase, thymidylat 69.6 2.6 9E-05 35.1 2.8 18 135-152 3-20 (204)
372 2bdt_A BH3686; alpha-beta prot 69.4 2 7E-05 35.4 2.1 16 137-152 3-18 (189)
373 1um8_A ATP-dependent CLP prote 69.3 2.9 9.8E-05 39.0 3.3 17 136-152 72-88 (376)
374 3eph_A TRNA isopentenyltransfe 69.2 2.5 8.6E-05 39.7 2.8 16 138-153 4-19 (409)
375 3ly5_A ATP-dependent RNA helic 69.2 22 0.00074 30.9 8.9 56 343-402 125-184 (262)
376 3asz_A Uridine kinase; cytidin 69.2 3 0.0001 35.0 3.1 18 135-152 5-22 (211)
377 2yan_A Glutaredoxin-3; oxidore 69.1 19 0.00066 26.1 7.3 62 338-399 10-77 (105)
378 3gfo_A Cobalt import ATP-bindi 69.0 2.3 8E-05 37.7 2.5 17 135-151 33-49 (275)
379 1zu4_A FTSY; GTPase, signal re 69.0 4.6 0.00016 36.7 4.5 17 136-152 105-121 (320)
380 1via_A Shikimate kinase; struc 69.0 3.1 0.00011 33.7 3.1 17 137-153 5-21 (175)
381 2pcj_A ABC transporter, lipopr 69.0 2.4 8.3E-05 36.3 2.5 17 135-151 29-45 (224)
382 3lnc_A Guanylate kinase, GMP k 68.9 2.1 7.3E-05 36.7 2.1 19 134-152 25-43 (231)
383 2pze_A Cystic fibrosis transme 68.9 2.4 8.4E-05 36.4 2.5 17 135-151 33-49 (229)
384 1m7g_A Adenylylsulfate kinase; 68.8 2.7 9.2E-05 35.4 2.7 30 123-153 13-42 (211)
385 2ghi_A Transport protein; mult 68.8 2.5 8.5E-05 37.2 2.6 17 135-151 45-61 (260)
386 3tqc_A Pantothenate kinase; bi 68.8 9.1 0.00031 34.7 6.4 23 138-162 94-116 (321)
387 2ff7_A Alpha-hemolysin translo 68.6 2.5 8.5E-05 36.9 2.5 17 135-151 34-50 (247)
388 2rhm_A Putative kinase; P-loop 68.6 2.1 7.1E-05 35.3 2.0 17 136-152 5-21 (193)
389 1ak2_A Adenylate kinase isoenz 68.3 3.1 0.00011 35.7 3.1 19 135-153 15-33 (233)
390 1bg2_A Kinesin; motor protein, 68.3 3.6 0.00012 37.5 3.6 23 130-152 70-94 (325)
391 3o8b_A HCV NS3 protease/helica 68.2 7.2 0.00025 39.3 6.0 66 172-251 396-461 (666)
392 1v5w_A DMC1, meiotic recombina 68.1 7.5 0.00026 35.7 5.8 58 136-195 122-180 (343)
393 3t61_A Gluconokinase; PSI-biol 68.1 3 0.0001 34.8 2.9 16 137-152 19-34 (202)
394 1qxn_A SUD, sulfide dehydrogen 68.0 5.3 0.00018 31.1 4.1 39 340-378 78-117 (137)
395 2bwj_A Adenylate kinase 5; pho 68.0 3.5 0.00012 34.0 3.3 18 135-152 11-28 (199)
396 2qt1_A Nicotinamide riboside k 67.7 1.7 5.9E-05 36.5 1.3 20 133-152 18-37 (207)
397 1tf5_A Preprotein translocase 67.7 15 0.0005 37.9 8.2 55 342-402 122-180 (844)
398 2iut_A DNA translocase FTSK; n 67.6 7.3 0.00025 38.4 5.8 41 137-181 215-255 (574)
399 1g6h_A High-affinity branched- 67.4 2.7 9.2E-05 36.9 2.5 17 135-151 32-48 (257)
400 1f9v_A Kinesin-like protein KA 67.3 4.2 0.00014 37.4 3.8 25 129-153 76-102 (347)
401 3t0q_A AGR253WP; kinesin, alph 67.3 4.1 0.00014 37.5 3.8 25 129-153 77-103 (349)
402 4g1u_C Hemin import ATP-bindin 67.2 2.7 9.4E-05 37.1 2.5 17 135-151 36-52 (266)
403 2zu0_C Probable ATP-dependent 67.1 3 0.0001 36.8 2.7 17 135-151 45-61 (267)
404 1b0u_A Histidine permease; ABC 67.1 2.8 9.6E-05 36.9 2.6 17 135-151 31-47 (262)
405 1tev_A UMP-CMP kinase; ploop, 67.1 2.9 9.9E-05 34.4 2.6 18 136-153 3-20 (196)
406 3dc4_A Kinesin-like protein NO 67.0 3.7 0.00013 37.7 3.4 23 130-152 87-111 (344)
407 1ji0_A ABC transporter; ATP bi 66.9 2.8 9.7E-05 36.3 2.5 17 135-151 31-47 (240)
408 2olj_A Amino acid ABC transpor 66.8 2.9 9.9E-05 36.9 2.6 17 135-151 49-65 (263)
409 2fsx_A RV0390, COG0607: rhodan 66.7 7.6 0.00026 30.5 4.9 38 342-379 78-116 (148)
410 1v8k_A Kinesin-like protein KI 66.7 4.2 0.00014 38.3 3.7 22 131-152 148-171 (410)
411 1vpl_A ABC transporter, ATP-bi 66.5 3 0.0001 36.6 2.6 17 135-151 40-56 (256)
412 1mv5_A LMRA, multidrug resista 66.5 2.5 8.5E-05 36.7 2.1 17 135-151 27-43 (243)
413 3ice_A Transcription terminati 66.4 16 0.00054 34.2 7.4 32 122-153 157-191 (422)
414 1in4_A RUVB, holliday junction 66.4 3.4 0.00012 37.7 3.1 16 137-152 52-67 (334)
415 1gvn_B Zeta; postsegregational 66.3 2.5 8.6E-05 37.8 2.1 16 137-152 34-49 (287)
416 2d2e_A SUFC protein; ABC-ATPas 66.2 3.1 0.00011 36.3 2.7 17 135-151 28-44 (250)
417 2iyv_A Shikimate kinase, SK; t 66.0 4.1 0.00014 33.2 3.3 17 137-153 3-19 (184)
418 3b6u_A Kinesin-like protein KI 65.9 4.2 0.00014 37.8 3.6 23 130-152 94-118 (372)
419 2h58_A Kinesin-like protein KI 65.9 4.5 0.00016 36.9 3.7 25 128-152 71-97 (330)
420 1zak_A Adenylate kinase; ATP:A 65.9 4 0.00014 34.6 3.3 18 136-153 5-22 (222)
421 1aky_A Adenylate kinase; ATP:A 65.8 3.9 0.00013 34.6 3.2 18 136-153 4-21 (220)
422 2vvg_A Kinesin-2; motor protei 65.8 4.3 0.00015 37.4 3.6 22 131-152 83-106 (350)
423 2ixe_A Antigen peptide transpo 65.8 3.1 0.00011 36.8 2.6 17 135-151 44-60 (271)
424 4etp_A Kinesin-like protein KA 65.8 4.7 0.00016 38.0 3.9 25 129-153 132-158 (403)
425 2nr8_A Kinesin-like protein KI 65.8 4.5 0.00015 37.4 3.7 24 129-152 95-120 (358)
426 3qks_A DNA double-strand break 65.7 4.2 0.00014 34.1 3.3 23 138-162 25-47 (203)
427 4fcw_A Chaperone protein CLPB; 65.7 3.2 0.00011 37.3 2.7 17 137-153 48-64 (311)
428 2qi9_C Vitamin B12 import ATP- 65.6 3.1 0.00011 36.3 2.5 17 135-151 25-41 (249)
429 1t5c_A CENP-E protein, centrom 65.6 4.6 0.00016 37.2 3.7 24 130-153 70-95 (349)
430 3umf_A Adenylate kinase; rossm 65.6 2.9 9.9E-05 35.6 2.3 20 135-154 28-47 (217)
431 1goj_A Kinesin, kinesin heavy 65.6 4.3 0.00015 37.5 3.6 22 131-152 74-97 (355)
432 3pxg_A Negative regulator of g 65.6 7.6 0.00026 37.3 5.5 18 136-153 201-218 (468)
433 1zd8_A GTP:AMP phosphotransfer 65.6 3.8 0.00013 34.9 3.1 17 136-152 7-23 (227)
434 2y65_A Kinesin, kinesin heavy 65.5 4.4 0.00015 37.6 3.6 22 131-152 78-101 (365)
435 2ihy_A ABC transporter, ATP-bi 65.5 3.1 0.00011 37.0 2.5 17 135-151 46-62 (279)
436 4a14_A Kinesin, kinesin-like p 65.4 4.4 0.00015 37.2 3.6 23 130-152 76-100 (344)
437 3nh6_A ATP-binding cassette SU 65.3 2.4 8.3E-05 38.3 1.8 17 135-151 79-95 (306)
438 3lre_A Kinesin-like protein KI 65.2 4.4 0.00015 37.4 3.6 22 131-152 99-122 (355)
439 3gbj_A KIF13B protein; kinesin 65.2 4.7 0.00016 37.2 3.7 24 129-152 84-109 (354)
440 1nks_A Adenylate kinase; therm 65.1 3.7 0.00013 33.6 2.9 15 138-152 3-17 (194)
441 2pez_A Bifunctional 3'-phospho 65.1 3.5 0.00012 33.5 2.7 18 135-152 4-21 (179)
442 1e6c_A Shikimate kinase; phosp 65.0 4.2 0.00014 32.7 3.1 17 137-153 3-19 (173)
443 2zfi_A Kinesin-like protein KI 65.0 4.8 0.00016 37.3 3.7 23 130-152 82-106 (366)
444 2r2a_A Uncharacterized protein 64.8 4.4 0.00015 34.0 3.2 17 138-154 7-23 (199)
445 2yz2_A Putative ABC transporte 64.7 3.3 0.00011 36.5 2.6 17 135-151 32-48 (266)
446 1x88_A Kinesin-like protein KI 64.7 4.5 0.00015 37.4 3.5 24 129-152 80-105 (359)
447 3fb4_A Adenylate kinase; psych 64.5 3.9 0.00013 34.5 2.9 16 138-153 2-17 (216)
448 2f1r_A Molybdopterin-guanine d 64.5 2.8 9.5E-05 34.2 1.9 15 138-152 4-18 (171)
449 2nq2_C Hypothetical ABC transp 64.4 3.3 0.00011 36.2 2.4 17 135-151 30-46 (253)
450 1tue_A Replication protein E1; 64.4 3.9 0.00013 34.5 2.7 50 108-160 28-81 (212)
451 2plr_A DTMP kinase, probable t 64.4 3.5 0.00012 34.5 2.6 18 135-152 3-20 (213)
452 2whx_A Serine protease/ntpase/ 64.2 15 0.00051 36.8 7.5 68 172-251 355-423 (618)
453 1cke_A CK, MSSA, protein (cyti 64.2 4.1 0.00014 34.5 3.0 18 136-153 5-22 (227)
454 1qf9_A UMP/CMP kinase, protein 64.1 4 0.00014 33.4 2.9 16 137-152 7-22 (194)
455 3sr0_A Adenylate kinase; phosp 64.0 4.1 0.00014 34.4 2.9 17 138-154 2-18 (206)
456 3auy_A DNA double-strand break 64.0 4.3 0.00015 37.8 3.3 49 369-418 306-359 (371)
457 3qf7_A RAD50; ABC-ATPase, ATPa 64.0 4.2 0.00014 37.7 3.2 16 138-153 25-40 (365)
458 1c9k_A COBU, adenosylcobinamid 63.7 8.6 0.00029 31.6 4.7 43 139-193 2-44 (180)
459 2cdn_A Adenylate kinase; phosp 63.7 4.6 0.00016 33.6 3.2 17 136-152 20-36 (201)
460 2heh_A KIF2C protein; kinesin, 63.5 5 0.00017 37.5 3.5 24 130-153 127-152 (387)
461 3dl0_A Adenylate kinase; phosp 63.4 4.1 0.00014 34.3 2.9 16 138-153 2-17 (216)
462 3nhv_A BH2092 protein; alpha-b 63.4 5.6 0.00019 31.3 3.4 37 342-378 70-108 (144)
463 2i1q_A DNA repair and recombin 63.3 6.5 0.00022 35.6 4.3 19 136-154 98-116 (322)
464 2wbe_C Bipolar kinesin KRP-130 63.2 4.8 0.00016 37.4 3.4 22 131-152 94-117 (373)
465 2z0m_A 337AA long hypothetical 63.1 15 0.00051 32.9 6.8 54 344-402 56-113 (337)
466 3cob_A Kinesin heavy chain-lik 63.0 4.6 0.00016 37.5 3.2 24 129-152 71-96 (369)
467 2r62_A Cell division protease 63.0 2 7E-05 37.7 0.8 17 136-152 44-60 (268)
468 1k2d_P MBP peptide, myelin bas 62.8 5.2 0.00018 20.1 1.9 13 8-20 3-15 (26)
469 2jaq_A Deoxyguanosine kinase; 62.7 4.4 0.00015 33.6 2.9 15 138-152 2-16 (205)
470 1ukz_A Uridylate kinase; trans 62.5 3.5 0.00012 34.4 2.2 16 137-152 16-31 (203)
471 2v3c_C SRP54, signal recogniti 62.3 5.7 0.00019 37.8 3.8 17 137-153 100-116 (432)
472 3u06_A Protein claret segregat 62.3 5.1 0.00017 37.8 3.4 24 129-152 130-155 (412)
473 3l9o_A ATP-dependent RNA helic 62.3 13 0.00043 40.2 6.9 69 338-417 221-297 (1108)
474 1vee_A Proline-rich protein fa 62.2 9.8 0.00033 29.3 4.6 37 343-379 73-110 (134)
475 2wwf_A Thymidilate kinase, put 62.1 4.9 0.00017 33.6 3.1 19 135-153 9-27 (212)
476 4e22_A Cytidylate kinase; P-lo 62.0 4.9 0.00017 35.0 3.1 18 135-152 26-43 (252)
477 3be4_A Adenylate kinase; malar 61.9 5 0.00017 33.9 3.1 17 136-152 5-21 (217)
478 1rz3_A Hypothetical protein rb 61.8 5.8 0.0002 33.0 3.5 17 136-152 22-38 (201)
479 4anj_A Unconventional myosin-V 61.6 15 0.00051 39.1 7.1 85 70-154 65-162 (1052)
480 1np6_A Molybdopterin-guanine d 61.5 9.2 0.00031 31.1 4.5 16 137-152 7-22 (174)
481 3vkg_A Dynein heavy chain, cyt 61.5 20 0.00067 43.0 8.6 48 106-154 873-924 (3245)
482 3k1j_A LON protease, ATP-depen 61.5 6.8 0.00023 39.1 4.4 21 132-152 56-76 (604)
483 3f9v_A Minichromosome maintena 61.2 4.8 0.00016 40.1 3.2 15 138-152 329-343 (595)
484 2rep_A Kinesin-like protein KI 61.2 6.1 0.00021 36.7 3.7 24 129-152 107-132 (376)
485 2vli_A Antibiotic resistance p 61.2 4.2 0.00014 33.0 2.4 18 136-153 5-22 (183)
486 1jjv_A Dephospho-COA kinase; P 61.2 4.9 0.00017 33.5 2.9 15 138-152 4-18 (206)
487 3fvq_A Fe(3+) IONS import ATP- 61.0 4.4 0.00015 37.5 2.7 24 135-160 29-52 (359)
488 2pt5_A Shikimate kinase, SK; a 60.8 5.1 0.00018 32.0 2.9 15 138-152 2-16 (168)
489 1nn5_A Similar to deoxythymidy 60.8 5.4 0.00019 33.3 3.2 19 135-153 8-26 (215)
490 2bbs_A Cystic fibrosis transme 60.8 4.3 0.00015 36.3 2.6 17 135-151 63-79 (290)
491 2if2_A Dephospho-COA kinase; a 60.8 4.9 0.00017 33.4 2.8 15 138-152 3-17 (204)
492 2owm_A Nckin3-434, related to 60.8 6.1 0.00021 37.6 3.7 24 130-153 129-154 (443)
493 1e4v_A Adenylate kinase; trans 60.7 4.8 0.00016 33.9 2.8 16 138-153 2-17 (214)
494 3bfn_A Kinesin-like protein KI 60.7 5.3 0.00018 37.3 3.2 21 132-152 93-115 (388)
495 3gx8_A Monothiol glutaredoxin- 60.6 37 0.0013 25.5 7.6 64 336-399 7-79 (121)
496 1g8p_A Magnesium-chelatase 38 60.6 2.8 9.4E-05 38.4 1.3 17 136-152 45-61 (350)
497 3aez_A Pantothenate kinase; tr 60.4 5.3 0.00018 36.2 3.1 26 135-162 89-114 (312)
498 2bbw_A Adenylate kinase 4, AK4 60.4 5.3 0.00018 34.5 3.1 17 136-152 27-43 (246)
499 1q57_A DNA primase/helicase; d 60.3 5.8 0.0002 38.6 3.6 40 133-179 239-278 (503)
500 2oca_A DAR protein, ATP-depend 60.1 48 0.0016 31.9 10.3 88 153-256 335-426 (510)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.7e-62 Score=476.45 Aligned_cols=344 Identities=36% Similarity=0.606 Sum_probs=316.8
Q ss_pred CceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCC
Q 013965 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (433)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~ 165 (433)
.+.+.+.+.|.|+.+|++++|++.+++++.++||.+|+|+|.++||.+++|+|++++||||||||++|++|++.++...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccc
Q 013965 166 FLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLR 245 (433)
Q Consensus 166 ~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~ 245 (433)
......++++||++|||+|+.|+++++.+++...++++.+++|+.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 43344578999999999999999999999998888999999999998888888888999999999999999998888899
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhc--CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQI--RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 323 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
++++||+||||+|++++|...++.++..+ ++++|+++||||+|+.++.++..++.++..+.+.... .....+.+.+.
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~ 281 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIY 281 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEE
Confidence 99999999999999999999999999875 6789999999999999999999999999888877655 45567788888
Q ss_pred ccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccc
Q 013965 324 IVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDV 403 (433)
Q Consensus 324 ~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~ 403 (433)
.+....|...|.+++.... .++||||++++.|+.+++.|...++.+..+||++++.+|.+++++|++|+.+|||||++
T Consensus 282 ~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v 359 (434)
T 2db3_A 282 EVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359 (434)
T ss_dssp ECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG
T ss_pred EeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh
Confidence 8888899999999998753 34999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 404 AARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 404 ~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++|||+ +++||+||+|.+...|+.+.-+
T Consensus 360 ~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR 390 (434)
T 2db3_A 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGR 390 (434)
T ss_dssp GTSSCCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred hhCCCCcccCCEEEEECCCCCHHHHHHHhcc
Confidence 9999999 9999999999999988765443
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-56 Score=433.00 Aligned_cols=345 Identities=42% Similarity=0.656 Sum_probs=307.8
Q ss_pred CceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCC
Q 013965 86 EITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQP 165 (433)
Q Consensus 86 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~ 165 (433)
.+.+.|.+.|.++.+|+++++++.+.++|...||..|+|+|.++|+.++.++++++++|||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred CC-------------CCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHH
Q 013965 166 FL-------------APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (433)
Q Consensus 166 ~~-------------~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~ 232 (433)
.. ....++++||++||++|+.|+++++.+++...++++..++|+.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11224789999999999999999999998888899999999998888888888899999999999
Q ss_pred HHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh--cCC--CCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ--IRP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 233 l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~--~~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
|.+++......+.++++||+||||++.+++|...+..++.. +++ ..|++++|||+++.+..++..++.++..+...
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999988888899999999999999999999999999874 332 68999999999999999999999998877765
Q ss_pred CCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHH
Q 013965 309 SPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLS 388 (433)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~ 388 (433)
... .....+.+.+.......+...+.+++.....++++||||+++++++.+++.|...++.+..+||++++++|.++++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 544 4455677777778888899999999988766789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 389 EFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 389 ~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
+|++|+.+|||||+++++|+|+ +++||++|+|.+...|+.+.-
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~G 365 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 365 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcC
Confidence 9999999999999999999999 999999999999988876543
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.4e-53 Score=416.46 Aligned_cols=332 Identities=30% Similarity=0.511 Sum_probs=295.5
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 013965 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (433)
Q Consensus 93 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (433)
..+.+..+|+++++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 334556789999999999999999999999999999999999999999999999999999999999876432 236
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEee
Q 013965 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (433)
Q Consensus 173 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVv 252 (433)
+++||++||++|+.|+++++.+++...++++..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 78999999999999999999999988899999999999888888888889999999999999999988888899999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccC-hhHHH
Q 013965 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS-ESQKY 331 (433)
Q Consensus 253 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~ 331 (433)
||||++.+++|...+..++..++++.|++++|||+++.+..+...++.+|..+...... .....+.+.+.... ...+.
T Consensus 186 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 186 DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp ETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHH
T ss_pred ccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999999998888999998877655443 23344555544444 44588
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
..+.+++... ..+++||||++++.++.+++.|...++.+..+||++++.+|.+++++|++|+.+|||||+++++|+|+
T Consensus 265 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 265 DTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 8888888775 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcccccccCCC
Q 013965 411 -CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
+++||++|+|.+...|+.+.-
T Consensus 344 ~v~~Vi~~~~p~s~~~~~Qr~G 365 (410)
T 2j0s_A 344 QVSLIINYDLPNNRELYIHRIG 365 (410)
T ss_dssp TEEEEEESSCCSSHHHHHHHHT
T ss_pred cCCEEEEECCCCCHHHHHHhcc
Confidence 999999999999888876543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.2e-52 Score=404.37 Aligned_cols=334 Identities=28% Similarity=0.472 Sum_probs=287.4
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 013965 93 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (433)
Q Consensus 93 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (433)
..+....+|+++++++.+++.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 445667889999999999999999999999999999999999999999999999999999999999887542 136
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeEe
Q 013965 173 PIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (433)
Q Consensus 173 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 251 (433)
.++||++||++|+.|+.+++.+++...+..+..++|+.....+...+. .+++|+|+||++|.+++......+.++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888899999999888776666655 6789999999999999998888888999999
Q ss_pred eccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHH
Q 013965 252 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKY 331 (433)
Q Consensus 252 vDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 331 (433)
+||||++.+++|...+..++..++++.|++++|||++..+..+...++.++..+........................+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999988776655533333333333344455588
Q ss_pred HHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-
Q 013965 332 NKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN- 410 (433)
Q Consensus 332 ~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi- 410 (433)
..+.+++... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 269 ~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 269 DTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 8888888765 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCeEEEEcCCCcccccccCCCC
Q 013965 411 -CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 -~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++||++|+|.+...|+.+.-+
T Consensus 348 ~v~~Vi~~~~p~s~~~~~Qr~GR 370 (414)
T 3eiq_A 348 QVSLVINYDLPTNRENYIHRIGR 370 (414)
T ss_dssp GCSCEEESSCCSSTHHHHHHSCC
T ss_pred CCCEEEEeCCCCCHHHhhhhcCc
Confidence 9999999999999888766543
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.2e-51 Score=396.29 Aligned_cols=326 Identities=26% Similarity=0.435 Sum_probs=290.7
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
.+|+++++++.+++.|.++||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999876532 226689999
Q ss_pred ecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
+||++|+.|+.+++.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987765 7889999998877666555554 47999999999999998887788999999999999
Q ss_pred hhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHH
Q 013965 257 RMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (433)
Q Consensus 257 ~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (433)
++.++ ++...+..++...++..|++++|||+++....++..++.+|..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 68888999998888899999999999999999999999999888776655445556677777778888889998
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCe
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CAC 413 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~ 413 (433)
+++... ..+++||||+++++++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+ +++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888775 66799999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcCCCcccccccCC
Q 013965 414 VIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 414 Vi~~d~p~~~~~~l~~~ 430 (433)
||++|+|.+...|+.+.
T Consensus 322 Vi~~~~p~s~~~~~Qr~ 338 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRV 338 (391)
T ss_dssp EEESSCCSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhc
Confidence 99999999998886544
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.8e-52 Score=420.11 Aligned_cols=325 Identities=30% Similarity=0.427 Sum_probs=267.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHh--cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
+++.+++.+.+.||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998765421 223678999999999
Q ss_pred HHHHHHHHHHHhccC----CCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcC-CcccccceeEeeccchh
Q 013965 184 LAVQIQQESTKFGAS----SKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (433)
Q Consensus 184 L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvDEah~ 257 (433)
|+.|+++++.++... ....+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+.++++||+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999986432 246688888888776666655 448999999999999988764 23578899999999999
Q ss_pred hhcCCcHHHHHHHHHhc-------CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCC---cccccceeeeeeccCh
Q 013965 258 MLDMGFEPQIKKILSQI-------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKANHAIRQHVDIVSE 327 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~-------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 327 (433)
+++++|...+..++..+ .+++|+++||||+++.+..++..++.++..+.+.... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999999887665 3478999999999999999999999888776653322 1223334444433322
Q ss_pred -hHH----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 328 -SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 328 -~~k----~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
..+ ...+...+.....+.++||||++++.|+.+++.|+.. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 222 2333334444456779999999999999999999876 89999999999999999999999999999999
Q ss_pred EccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 400 ATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 400 aT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
||+++++|||+ +++||++|+|.+...|+.+.-
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 431 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcC
Confidence 99999999999 999999999999988876543
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.5e-51 Score=397.37 Aligned_cols=327 Identities=28% Similarity=0.468 Sum_probs=291.2
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEE
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 175 (433)
.+..+|+++++++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 345689999999999999999999999999999999999999999999999999999999999886532 136689
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEA 255 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEa 255 (433)
||++|+++|+.|+.+.+.+++...++++..++|+.....+...+...++|+|+||++|.+++......+.++++||+|||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988889999999998877777777788999999999999999887778899999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHH
Q 013965 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLV 335 (433)
Q Consensus 256 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 335 (433)
|++.+.+|...+..++..+++..|++++|||++..+......++..+..+..... .....+.+.+.......+...+.
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~ 250 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLN 250 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHH
Confidence 9999888999999999999899999999999999999999999988876644332 33455666777777888888888
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCe
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CAC 413 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~ 413 (433)
.++... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+ +++
T Consensus 251 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 251 TLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 888764 56799999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcCCCcccccccCC
Q 013965 414 VIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 414 Vi~~d~p~~~~~~l~~~ 430 (433)
||++|+|.+...|+.+.
T Consensus 330 Vi~~~~p~s~~~~~Qr~ 346 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRI 346 (400)
T ss_dssp EEESSCCSSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHhc
Confidence 99999999988776543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5e-50 Score=389.04 Aligned_cols=322 Identities=28% Similarity=0.446 Sum_probs=278.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
...+|+++++++.+++.+.+.||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999998 9999999999999999999999887542 23678
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeecc
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDE 254 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDE 254 (433)
+||++||++|+.|+++.+.+++...++.+...+++...... ..+++|+|+||++|.+++......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988888888888877544322 34689999999999999988888899999999999
Q ss_pred chhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee-ccChhHHHH
Q 013965 255 ADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD-IVSESQKYN 332 (433)
Q Consensus 255 ah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~ 332 (433)
||++.+ .++...+..+...++++.|++++|||+++.+..++..++.++..+........ ...+.+.+. ......+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999887 67889999999999999999999999999999999999988877765544422 333444433 345566777
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
.+..++... ..+++||||+++++++.+++.|+..++.+..+||++++.+|.+++++|++|+.+|||||+++++|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 676666554 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCC------cccccccC
Q 013965 411 CACVIIVLCTF------VLYLTLGP 429 (433)
Q Consensus 411 ~~~Vi~~d~p~------~~~~~l~~ 429 (433)
+++||++|+|. +...|+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr 336 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHR 336 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHH
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHh
Confidence 99999999998 65555543
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.5e-50 Score=390.18 Aligned_cols=317 Identities=26% Similarity=0.405 Sum_probs=274.4
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 013965 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDG 172 (433)
Q Consensus 95 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~ 172 (433)
+.++.+|+++++++.+++.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 355788999999999999999999999999999999999987 9999999999999999999999887542 236
Q ss_pred CEEEEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc-CCcccccceeE
Q 013965 173 PIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYL 250 (433)
Q Consensus 173 ~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~l 250 (433)
+++||++||++|+.|+++.+.++.... ++.+....++...... ....++|+|+||++|.+++.+ ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999987653 5777777777654322 134689999999999999865 45567899999
Q ss_pred eeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeee-eccChh
Q 013965 251 VLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIVSES 328 (433)
Q Consensus 251 VvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 328 (433)
|+||||++.+ .++...+..+...++++.|++++|||+++.+..++..++.++..+...... .....+.+.+ ......
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChH
Confidence 9999999987 678889999999999999999999999999999999999998877665544 3334444444 344556
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCC
Q 013965 329 QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGL 408 (433)
Q Consensus 329 ~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gl 408 (433)
.+...+.+++... ..+++||||+++++|+.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 252 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 7888888887765 557899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc--cCeEEEEcCCC
Q 013965 409 GN--CACVIIVLCTF 421 (433)
Q Consensus 409 di--~~~Vi~~d~p~ 421 (433)
|+ +++||++|+|.
T Consensus 331 dip~~~~Vi~~~~p~ 345 (412)
T 3fht_A 331 DVEQVSVVINFDLPV 345 (412)
T ss_dssp CCTTEEEEEESSCCB
T ss_pred CccCCCEEEEECCCC
Confidence 99 99999999995
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-49 Score=382.35 Aligned_cols=320 Identities=35% Similarity=0.547 Sum_probs=285.2
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC-CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
..+|+++++++.+.+.+.+.||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .+.++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 467999999999999999999999999999999999988 7999999999999999999998876542 367899
Q ss_pred EEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
|++|+++|+.|+.+++.++....++++..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999887666555544 69999999999999998887788999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
++.+++|...+..++..++++.+++++|||++.........++.++..+.... ...+.+.+......++...+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888776554332 2345556666777888888888
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACV 414 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~V 414 (433)
++. ..+.++||||+++++++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+ +++|
T Consensus 233 ~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 876 356689999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCcccccccCCC
Q 013965 415 IIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 415 i~~d~p~~~~~~l~~~~ 431 (433)
|++++|.+...|+.+.-
T Consensus 311 i~~~~~~s~~~~~Q~~G 327 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIG 327 (367)
T ss_dssp EESSCCSCHHHHHHHST
T ss_pred EEecCCCCHHHhhhccc
Confidence 99999999888876544
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-50 Score=408.65 Aligned_cols=325 Identities=30% Similarity=0.430 Sum_probs=269.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHh--cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l--~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
|++.+++.+.++||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 68899999999999999999999998876532 2233678999999999
Q ss_pred HHHHHHHHHHHhcc----CCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcC-CcccccceeEeeccchh
Q 013965 184 LAVQIQQESTKFGA----SSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLDEADR 257 (433)
Q Consensus 184 L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvDEah~ 257 (433)
|+.|+++++.++.. ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998753 23467888899888777666664 47999999999999988764 33578899999999999
Q ss_pred hhcCCcHHHHHHHHHhcC-------CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCC---cccccceeeeeeccCh
Q 013965 258 MLDMGFEPQIKKILSQIR-------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD---LKANHAIRQHVDIVSE 327 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~-------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 327 (433)
+++++|...+..++..++ +++|+++||||+++.+..++..++.++..+.+.... ......+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999999998876653 378999999999999999999999988776553322 1223344444433332
Q ss_pred -hHH----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 328 -SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---GWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 328 -~~k----~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
..+ ...+...+.....+.++||||++++.|+.+++.|+.. ++.+..+||+|++.+|.+++++|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 222 2333334444345679999999999999999999876 89999999999999999999999999999999
Q ss_pred EccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 400 ATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 400 aT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
||+++++|||+ +++||++|+|.+...|+.+.-
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~G 380 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 380 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHT
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcc
Confidence 99999999999 999999999999988876543
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.4e-51 Score=395.38 Aligned_cols=331 Identities=30% Similarity=0.479 Sum_probs=189.8
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCC
Q 013965 94 VPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGP 173 (433)
Q Consensus 94 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~ 173 (433)
..++..+|+++++++.+.+.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45667889999999999999999999999999999999999999999999999999999999999887542 2367
Q ss_pred EEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 174 IVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 174 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
++||++|+++|+.|+.+++.++....++++..++|+.........+. +++|+|+||++|.+.+......+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999998888899999999887665554444 68999999999999998877778899999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccCh-hHHHH
Q 013965 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSE-SQKYN 332 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~ 332 (433)
|||++.+++|...+..++..+++..|++++|||+++....+...++.+|..+....... ....+.+.+..... ..+..
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHHH
Confidence 99999999999999999999999999999999999999999999999998887765442 22333333333333 33666
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
.+.+++... ..+++||||+++++++.+++.|+..++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 666666554 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEcCCCcccccccCCCC
Q 013965 411 CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 411 ~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+++||++|+|.+...|+.+.-+
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR 349 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGR 349 (394)
T ss_dssp ----------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCc
Confidence 9999999999998888776543
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=401.95 Aligned_cols=333 Identities=27% Similarity=0.403 Sum_probs=181.1
Q ss_pred eeccCCCCCC---CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 88 TVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 88 ~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.+.+.+.+.| +.+|++++|++.+++.+.++||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~ 157 (479)
T 3fmp_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (479)
T ss_dssp EEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC
T ss_pred eecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh
Confidence 3444444544 568999999999999999999999999999999999987 99999999999999999999998765
Q ss_pred cCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc-C
Q 013965 163 AQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-H 240 (433)
Q Consensus 163 ~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~ 240 (433)
.. ..++++|||+||++|+.|+++.+.++.... ++.+....++...... ....++|+|+||++|.+++.+ .
T Consensus 158 ~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 158 PA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp TT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC
T ss_pred hc-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcC
Confidence 42 236689999999999999999999887653 5677777776554322 134679999999999999866 3
Q ss_pred CcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCccccccee
Q 013965 241 NTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR 319 (433)
Q Consensus 241 ~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (433)
...+.++++||+||||++++ .++...+..+...+++++|++++|||++..+..++..++.++..+.+.... .....+.
T Consensus 230 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 308 (479)
T 3fmp_B 230 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIK 308 (479)
T ss_dssp CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------
T ss_pred CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCce
Confidence 45678999999999999987 678889999999999999999999999999999999999999888776654 3334444
Q ss_pred eeeeccC-hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 013965 320 QHVDIVS-ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (433)
Q Consensus 320 ~~~~~~~-~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iL 398 (433)
+.+..+. ...+...+..++... ...++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 309 QYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 4444333 355666666666554 45689999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCc--cCeEEEEcCCC------cccccccCC
Q 013965 399 TATDVAARGLGN--CACVIIVLCTF------VLYLTLGPL 430 (433)
Q Consensus 399 vaT~~~~~Gldi--~~~Vi~~d~p~------~~~~~l~~~ 430 (433)
|||+++++|+|+ +++||++|+|. +...|+.+.
T Consensus 388 v~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp ----------------------------------------
T ss_pred EEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 999999999999 99999999994 445555443
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-47 Score=387.14 Aligned_cols=312 Identities=20% Similarity=0.233 Sum_probs=255.6
Q ss_pred CcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe
Q 013965 101 FRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (433)
Q Consensus 101 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 179 (433)
+.++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 3457889999999998 69999999999999999999999999999999999999999752 45899999
Q ss_pred cCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH------hhcCCcEEEeChHHHH------HHHHcCCcccccc
Q 013965 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD------LQKGVEIVIATPGRLI------DMLESHNTNLRRV 247 (433)
Q Consensus 180 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~Iiv~Tp~~l~------~~l~~~~~~l~~~ 247 (433)
|+++|+.|+.+.+.++ ++++..+.++......... ....++|+|+||++|. +.+.. ...+.++
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 9999999999999997 4778888888765544322 2357899999999874 23332 3346789
Q ss_pred eeEeeccchhhhcCC--cHHHHHH--HHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeee
Q 013965 248 TYLVLDEADRMLDMG--FEPQIKK--ILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVD 323 (433)
Q Consensus 248 ~~lVvDEah~~~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
++|||||||++++|+ |.+.+.. ++....++.+++++|||+++.+...+..++..+....+.... ...++...+.
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~ 244 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVR 244 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEE
Confidence 999999999999988 8887765 455556789999999999999888888877655333332221 1223333333
Q ss_pred cc--ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc
Q 013965 324 IV--SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (433)
Q Consensus 324 ~~--~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT 401 (433)
.. ...++...+.+++.....+.++||||++++.++.+++.|...++.+..+||+|++.+|.+++++|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 22 2345667777777655567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 402 DVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 402 ~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
+++++|||+ +++||++|+|.++..|+...
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~ 355 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQES 355 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHH
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHh
Confidence 999999999 99999999999998887543
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.5e-47 Score=358.15 Aligned_cols=302 Identities=29% Similarity=0.470 Sum_probs=259.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
|++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++.. +.++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998864 56799999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHH
Q 013965 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEP 265 (433)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~ 265 (433)
.|+.+++.+++...++++..++|+.....+...+. .++|+|+||++|.+++......+.++++||+||||++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999887766655554 49999999999999988877778999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCC
Q 013965 266 QIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGS 345 (433)
Q Consensus 266 ~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 345 (433)
.+..++...+...+++++|||+++........++.++..+... .....+.+.+.......+ .....+.. ..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHh-CCCC
Confidence 9999999999999999999999999999999998887665322 222334444333333222 22234433 3567
Q ss_pred eEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcc
Q 013965 346 RILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVL 423 (433)
Q Consensus 346 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~ 423 (433)
++||||+++++++.+++.|. .+..+||+++..+|.+++++|++|+.+|||||+++++|+|+ +++||++++|.+.
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999999886 58899999999999999999999999999999999999999 9999999999999
Q ss_pred cccccCC
Q 013965 424 YLTLGPL 430 (433)
Q Consensus 424 ~~~l~~~ 430 (433)
..|+.+.
T Consensus 298 ~~~~Q~~ 304 (337)
T 2z0m_A 298 RTYIHRI 304 (337)
T ss_dssp HHHHHHH
T ss_pred HHhhHhc
Confidence 8776543
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-48 Score=383.76 Aligned_cols=331 Identities=27% Similarity=0.416 Sum_probs=233.3
Q ss_pred ccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCC
Q 013965 90 EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL 167 (433)
Q Consensus 90 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~ 167 (433)
.....|.++..|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||+|||++|++|++..+...
T Consensus 110 ~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--- 186 (508)
T 3fho_A 110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--- 186 (508)
T ss_dssp -----------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---
T ss_pred cccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---
Confidence 33344556667777889999999999999999999999999999998 9999999999999999999999887543
Q ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 168 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
..++++||++|+++|+.|+.+++.+++...++.+....++.... .....++|+|+||++|.+.+......+.++
T Consensus 187 --~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 187 --VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp --CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred --CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 23668999999999999999999999887777766666554332 223468999999999999998888888999
Q ss_pred eeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeee-ecc
Q 013965 248 TYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV-DIV 325 (433)
Q Consensus 248 ~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 325 (433)
++||+||||++.+ .++...+..++..++++.|++++|||+++.++.+...++.++..+......... ..+.+.+ ...
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 339 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQ 339 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC-
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECC
Confidence 9999999999887 679999999999999999999999999999999999999998777655544322 2333333 333
Q ss_pred ChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccc
Q 013965 326 SESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (433)
Q Consensus 326 ~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 405 (433)
....+...+.+++... ..+++||||+++++|+.++..|.+.++.+.++||++++.+|..+++.|++|+.+|||||++++
T Consensus 340 ~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~ 418 (508)
T 3fho_A 340 SEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 418 (508)
T ss_dssp -CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC---
T ss_pred chHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhh
Confidence 4566777777766554 557899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc--cCeEEEEcCC------CcccccccCCC
Q 013965 406 RGLGN--CACVIIVLCT------FVLYLTLGPLS 431 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~p------~~~~~~l~~~~ 431 (433)
+|+|+ +++||++|+| .+...|+.+.-
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G 452 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 452 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTS
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhh
Confidence 99999 9999999999 66777665543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.7e-46 Score=372.36 Aligned_cols=310 Identities=19% Similarity=0.246 Sum_probs=249.4
Q ss_pred CCCcCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 99 KSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
.+|+++++++.+.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 89999999999999999999999999999999999999999853 457999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH----hhcCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD----LQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
|+|+++|+.|+.+.+.++ ++.+..+.++......... .....+|+|+||++|............++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 3777788777665443221 23468999999999853211111234679999999
Q ss_pred cchhhhcCC--cHHHHHHH--HHhcCCCCcEEEEEeccchHHHHHHHHhc--CCCeEEEeCCCCcccccceeeeeeccCh
Q 013965 254 EADRMLDMG--FEPQIKKI--LSQIRPDRQTLYWSATWPKEVEHLARQYL--YNPYKVIIGSPDLKANHAIRQHVDIVSE 327 (433)
Q Consensus 254 Eah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (433)
|||++.+++ |.+.+..+ +....++.+++++|||+++.+.......+ .++..+ ..... ..++... ....
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~~~--v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRYM--LMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEEEE--EEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceEEE--EEeC
Confidence 999999887 77776654 22334679999999999988766444433 344433 32221 2233322 2233
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccC
Q 013965 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 407 (433)
..+...+.+++... .+.++||||+|+++++.+++.|+..++.+..+||+|++++|.+++++|++|+.+|||||+++++|
T Consensus 221 ~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~G 299 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299 (523)
T ss_dssp SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTT
T ss_pred CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCC
Confidence 55677788888764 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc--cCeEEEEcCCCcccccccCC
Q 013965 408 LGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 408 ldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
||+ +++||++|+|.++..|+...
T Consensus 300 iD~p~v~~VI~~~~p~s~~~y~Qr~ 324 (523)
T 1oyw_A 300 INKPNVRFVVHFDIPRNIESYYQET 324 (523)
T ss_dssp TCCTTCCEEEESSCCSSHHHHHHHH
T ss_pred CCccCccEEEEECCCCCHHHHHHHh
Confidence 999 99999999999998886543
No 18
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.7e-44 Score=324.88 Aligned_cols=239 Identities=65% Similarity=1.097 Sum_probs=221.6
Q ss_pred CCHHHHHHHHHhcCceeccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 73 MSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
++++++..+++.+.|.+.+.+.|+|+.+|+++++++.+++.+.+.||..|+|+|.++++.+++|+++++++|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHH
Q 013965 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232 (433)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~ 232 (433)
|++|++.++...+......++++||++||++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987655555568899999999999999999999998888899999999999888888888899999999999
Q ss_pred HHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCC
Q 013965 233 LIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPD 311 (433)
Q Consensus 233 l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (433)
|.+++......+.++++||+||||++++++|...+..++..+++++|+++||||+|++++.+++.++.+|..+.++..+
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC--
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCCC
Confidence 9999998888899999999999999999999999999999999999999999999999999999999999998877643
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.9e-44 Score=352.08 Aligned_cols=293 Identities=22% Similarity=0.254 Sum_probs=234.6
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH
Q 013965 110 VMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI 188 (433)
Q Consensus 110 l~~~l~~-~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~ 188 (433)
+.+.+++ .|| +|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ++++||++||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHHH
Confidence 4444554 355 8999999999999999999999999999999999998876632 77899999999999999
Q ss_pred HHHHHHhccCCCceEEEEECCccC---hHhHHHhhcC-CcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhc----
Q 013965 189 QQESTKFGASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---- 260 (433)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~---- 260 (433)
++.+.+++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++.+
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 999999987 78999999999887 4455666665 99999999999888764 5567899999999986653
Q ss_pred -------CCcHHH-HHHHHHhcC-----------CCCcEEEEEec-cchHHH-HHHHHhcCCCeEEEeCCCCccccccee
Q 013965 261 -------MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIR 319 (433)
Q Consensus 261 -------~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (433)
++|... +..++..++ ++.|++++||| +|..+. .+...++. +.+.... .....+.
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~ 232 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNIT 232 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccch
Confidence 678777 788888776 88999999999 565544 33333333 1111111 2334455
Q ss_pred eeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhcCCCCEE
Q 013965 320 QHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIM 398 (433)
Q Consensus 320 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~r~~~~~~f~~g~~~iL 398 (433)
+.+... ++...+.++++.. ++++||||+++++|+.+++.|+..++.+. .+||+ +|. +++|++|+.+||
T Consensus 233 ~~~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vL 301 (414)
T 3oiy_A 233 HVRISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINIL 301 (414)
T ss_dssp EEEESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEE
T ss_pred heeecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEE
Confidence 555444 3555667777663 47899999999999999999999999998 89985 444 999999999999
Q ss_pred EE----ccccccCCCc---cCeEEEEcCC--CcccccccCC
Q 013965 399 TA----TDVAARGLGN---CACVIIVLCT--FVLYLTLGPL 430 (433)
Q Consensus 399 va----T~~~~~Gldi---~~~Vi~~d~p--~~~~~~l~~~ 430 (433)
|| |+++++|+|+ +++||++|+| .+...|+.+.
T Consensus 302 vat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~ 342 (414)
T 3oiy_A 302 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQAS 342 (414)
T ss_dssp EEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHH
T ss_pred EEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHh
Confidence 99 9999999999 3899999999 8888887543
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8e-44 Score=370.21 Aligned_cols=316 Identities=22% Similarity=0.267 Sum_probs=213.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH
Q 013965 112 QEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (433)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~ 191 (433)
..+..+||.+|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+ .+.+.++|||+||++|+.|+.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999998887643 12246899999999999999999
Q ss_pred HHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeeccchhhhcCC-cHHHHHH
Q 013965 192 STKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKK 269 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDEah~~~~~~-~~~~~~~ 269 (433)
+.+++...++++..++|+.....+...+..+++|+|+||++|.+.+..... .+.++++|||||||++.... +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999988888999999999877666667777899999999999999988766 68899999999999987554 2222222
Q ss_pred HHHh-----cCCCCcEEEEEeccc-------hH-HHHHHH---------------------HhcCCCeEEEeCCCCccc-
Q 013965 270 ILSQ-----IRPDRQTLYWSATWP-------KE-VEHLAR---------------------QYLYNPYKVIIGSPDLKA- 314 (433)
Q Consensus 270 i~~~-----~~~~~~~l~~SAT~~-------~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~- 314 (433)
.+.. .++..++++||||+. .+ ...+.. .+...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 11 122111 111222211110000000
Q ss_pred --------------------------------------------------------------------------------
Q 013965 315 -------------------------------------------------------------------------------- 314 (433)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (433)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------ccceeeeee----------------ccChhHHHHHHHHHHHhh---cCCCe
Q 013965 315 -----------------------------NHAIRQHVD----------------IVSESQKYNKLVKLLEDI---MDGSR 346 (433)
Q Consensus 315 -----------------------------~~~~~~~~~----------------~~~~~~k~~~l~~~l~~~---~~~~~ 346 (433)
...+.+.+. ......|...|.+++... ..+.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 001345777788888765 25678
Q ss_pred EEEEeCCcccHHHHHHHHHhCC----CceEEE--------cCCCCHHHHHHHHHHHhc-CCCCEEEEccccccCCCc--c
Q 013965 347 ILIFMDTKKGCDQITRQLRMDG----WPALSI--------HGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLGN--C 411 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~~----~~~~~l--------h~~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi--~ 411 (433)
+||||++++.++.+++.|+..+ +.+..+ ||+|++.+|.+++++|++ |+.+|||||+++++|||+ +
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999 9
Q ss_pred CeEEEEcCCCcccccccCC
Q 013965 412 ACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 412 ~~Vi~~d~p~~~~~~l~~~ 430 (433)
++||+||+|.+...|+.+.
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~ 499 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTR 499 (696)
T ss_dssp SEEEEESCC--CCCC----
T ss_pred CEEEEeCCCCCHHHHHHhh
Confidence 9999999999999988754
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.3e-43 Score=362.86 Aligned_cols=314 Identities=20% Similarity=0.201 Sum_probs=242.9
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
..+|+++++++.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||++|.++++..+... +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 46799999999999999999999999999999999 77899999999999999999999999887643 67999
Q ss_pred EEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
|++|+++|+.|++++++++. ..++++..++|+...... ....++|+|+||++|..++.+....+.++++||+||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999996554 347888888888765432 12368999999999999998877678999999999999
Q ss_pred hhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCccccccee--------eeeeccC--
Q 013965 257 RMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIR--------QHVDIVS-- 326 (433)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-- 326 (433)
++.+..+...++.++..++ +.|++++|||+++ .+.++..+. .+. +............+. ..+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 9988889999999888776 8999999999975 455555443 221 111100000000000 0111111
Q ss_pred ------hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCC--------------------------------
Q 013965 327 ------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDG-------------------------------- 368 (433)
Q Consensus 327 ------~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-------------------------------- 368 (433)
...+...+.+.+ ..++++||||+++++++.++..|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 133334343333 356899999999999999999998642
Q ss_pred ----CceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE----Ec-------CCCcccccccC
Q 013965 369 ----WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII----VL-------CTFVLYLTLGP 429 (433)
Q Consensus 369 ----~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~----~d-------~p~~~~~~l~~ 429 (433)
..+..+||+|++++|..+++.|++|..+|||||+++++|||+ +++||+ || .|.+...|+++
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr 386 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQM 386 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHH
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHH
Confidence 348999999999999999999999999999999999999999 777777 77 67766666543
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-43 Score=357.50 Aligned_cols=310 Identities=20% Similarity=0.205 Sum_probs=196.7
Q ss_pred CCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
+..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.|+.+++.+++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345799999999999999999999999999999999999999887643 22367899999999999999999999988
Q ss_pred CCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeeccchhhhcCCcHHHH-HHHHHh--
Q 013965 198 SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQI-KKILSQ-- 273 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDEah~~~~~~~~~~~-~~i~~~-- 273 (433)
..++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++||+||||++.+++....+ ...+..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 778999999999877777777777899999999999999988776 7899999999999999887643333 222221
Q ss_pred --cCCCCcEEEEEeccch-----------HHHHHHHH------------------hcCCCeEEEeCCCCccccc------
Q 013965 274 --IRPDRQTLYWSATWPK-----------EVEHLARQ------------------YLYNPYKVIIGSPDLKANH------ 316 (433)
Q Consensus 274 --~~~~~~~l~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~------ 316 (433)
..+..+++++|||++. .+..+... +...|..............
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1467899999999843 11112111 1122221111111000000
Q ss_pred ----cee--------------------------eee--------------------------------------------
Q 013965 317 ----AIR--------------------------QHV-------------------------------------------- 322 (433)
Q Consensus 317 ----~~~--------------------------~~~-------------------------------------------- 322 (433)
.+. +.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 000
Q ss_pred ---------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeCCc
Q 013965 323 ---------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDTK 354 (433)
Q Consensus 323 ---------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s~ 354 (433)
.......|...|.+++... ..+.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 0001244667777777654 4567999999999
Q ss_pred ccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEccccccCCCc--cCeEEEEcC
Q 013965 355 KGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLGN--CACVIIVLC 419 (433)
Q Consensus 355 ~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi--~~~Vi~~d~ 419 (433)
+.++.+++.|... |.....+||+|++.+|.+++++|++ |+.+|||||+++++|||+ +++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 5556677888999999999999999 999999999999999999 999999999
Q ss_pred CCcccccccCC
Q 013965 420 TFVLYLTLGPL 430 (433)
Q Consensus 420 p~~~~~~l~~~ 430 (433)
|.+...|+.+.
T Consensus 481 p~s~~~~~Qr~ 491 (556)
T 4a2p_A 481 SGNVTKMIQVR 491 (556)
T ss_dssp CSCHHHHHHC-
T ss_pred CCCHHHHHHhc
Confidence 99999988764
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.3e-43 Score=366.87 Aligned_cols=308 Identities=18% Similarity=0.191 Sum_probs=244.1
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
+|+++++++.+.+.+.+.||..|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 688999999999999999999999999999998 88899999999999999999999999887642 6789999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+|+++|+.|++++++++.. .++++..++|+...... ....++|+|+||++|..++......++++++||+||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976653 47889999998765433 2346899999999999998887666899999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeee------eeccC-----h
Q 013965 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQH------VDIVS-----E 327 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~ 327 (433)
.++++...+..++..++.+.|++++|||+++ .+.++..+ ..+. +.... .+..+... +.... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~----rp~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVSDW----RPVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EECCC----CSSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCC----CCCcceEEEEeCCeeeccccchhhh
Confidence 9988999999999988778999999999975 45555543 3211 11100 01111111 11111 1
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC---------------------------------CCceEEE
Q 013965 328 SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------------------------GWPALSI 374 (433)
Q Consensus 328 ~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~l 374 (433)
..+...+.+.+ ..++++||||+++++|+.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 22333444433 35689999999999999999998752 1248999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE----Ec----CCCccccccc
Q 013965 375 HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII----VL----CTFVLYLTLG 428 (433)
Q Consensus 375 h~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~----~d----~p~~~~~~l~ 428 (433)
||+|++++|..+++.|++|.++|||||+++++|||+ +++||+ || .|.+...|++
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 999999999999999999999999999999999999 666666 55 4666555543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.1e-43 Score=366.26 Aligned_cols=307 Identities=17% Similarity=0.211 Sum_probs=238.9
Q ss_pred CCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 100 SFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 100 ~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+|++++ +++.+.+.+++.||.+|+|+|.++++.+++++++++++|||||||++|.+|++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988764 568999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
++|+++|+.|++++++++. ..++++..++|+...... ....++|+|+||++|..++.+....++++++||+||||+
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 457899999998765432 124789999999999999988776789999999999999
Q ss_pred hhcCCcHHHHHHHHHhc---CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeee------eccChh
Q 013965 258 MLDMGFEPQIKKILSQI---RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHV------DIVSES 328 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 328 (433)
+.++++...+..++..+ +++.|++++|||+++ .+.++..+ ..+. +..... +..+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r----~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWR----PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCC----SSCEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCC----CccceEEEeeCCeeeccCcc
Confidence 99988888888876655 678999999999985 55565543 3322 111111 11111111 011111
Q ss_pred -------HHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC------------------------------CCce
Q 013965 329 -------QKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD------------------------------GWPA 371 (433)
Q Consensus 329 -------~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~~~ 371 (433)
.+...+.+.+ ..++++||||+++++++.++..|... +..+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 1344444444 35679999999999999999988742 2458
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE----Ec---CCCccccccc
Q 013965 372 LSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII----VL---CTFVLYLTLG 428 (433)
Q Consensus 372 ~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~----~d---~p~~~~~~l~ 428 (433)
..+||+|++++|..+++.|++|+.+|||||+++++|||+ +++||+ || .|.+...|+.
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Q 365 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQ 365 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHH
Confidence 899999999999999999999999999999999999999 666666 55 4555555543
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9e-42 Score=345.73 Aligned_cols=308 Identities=20% Similarity=0.253 Sum_probs=213.2
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.|+.+++.+++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3689999999999999999999999999999999999999887643 2236789999999999999999999998888
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeeccchhhhcCC-cHHHHHHHHHhc---
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMG-FEPQIKKILSQI--- 274 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDEah~~~~~~-~~~~~~~i~~~~--- 274 (433)
++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++||+||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999877766667777899999999999999988766 78899999999999998765 333333333322
Q ss_pred --CCCCcEEEEEeccchH-----------HHHHHHHh------------------cCCCeEEEeCCCCcccccceee---
Q 013965 275 --RPDRQTLYWSATWPKE-----------VEHLARQY------------------LYNPYKVIIGSPDLKANHAIRQ--- 320 (433)
Q Consensus 275 --~~~~~~l~~SAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~--- 320 (433)
.+..+++++|||++.. +..+...+ ...|.......... .......
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHHHHH
Confidence 2568999999998542 11111111 11111111100000 0000000
Q ss_pred -----------------------------------e--------------------------------------------
Q 013965 321 -----------------------------------H-------------------------------------------- 321 (433)
Q Consensus 321 -----------------------------------~-------------------------------------------- 321 (433)
.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0
Q ss_pred ---------------------------------------------eeccChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 013965 322 ---------------------------------------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (433)
Q Consensus 322 ---------------------------------------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s 353 (433)
........|...|.+++... ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00001244666777777654 345799999999
Q ss_pred cccHHHHHHHHHhCC------------CceEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEccccccCCCc--cCeEEEEc
Q 013965 354 KKGCDQITRQLRMDG------------WPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLGN--CACVIIVL 418 (433)
Q Consensus 354 ~~~~~~l~~~L~~~~------------~~~~~lh~~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi--~~~Vi~~d 418 (433)
++.++.+++.|...+ .....+||+|++.+|.+++++|++ |+.+|||||+++++|||+ +++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999998763 344556679999999999999999 999999999999999999 99999999
Q ss_pred CCCcccccccCCC
Q 013965 419 CTFVLYLTLGPLS 431 (433)
Q Consensus 419 ~p~~~~~~l~~~~ 431 (433)
+|.+...|+.+.-
T Consensus 479 ~p~s~~~~~Qr~G 491 (555)
T 3tbk_A 479 YVGNVIKMIQTRG 491 (555)
T ss_dssp CCSSCCCEECSSC
T ss_pred CCCCHHHHHHhcC
Confidence 9999999987653
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-43 Score=374.66 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=241.7
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
..|...++++.+...+...++..|+|+|.++++.++.+++++++||||||||++|++|++..+.. +.++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666777777766666677778999999999999999999999999999999999999988754 6799999
Q ss_pred ecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 179 APTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
+||++|+.|+++.+.+++. .+..++|+... ..+++|+|+||++|.+++......+.++++|||||||++
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 9999999999999999775 56677887653 346899999999999999988777899999999999999
Q ss_pred hcCCcHHHHHHHHHhcCCCCcEEEEEeccchH--HHHHHHHhcCCCeEEEeCCCCcccccceeeeeec---------cC-
Q 013965 259 LDMGFEPQIKKILSQIRPDRQTLYWSATWPKE--VEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDI---------VS- 326 (433)
Q Consensus 259 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~- 326 (433)
.+++|...+..++..+++..|+++||||+|+. +..+.......+..+....... ..+..++.. ..
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEET
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeecc
Confidence 99999999999999999999999999999764 3355555566665554433221 111111110 00
Q ss_pred ---------------------------------------------hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 013965 327 ---------------------------------------------ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (433)
Q Consensus 327 ---------------------------------------------~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~ 361 (433)
...+...++..+... ...++||||++++.|+.++
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-TCCCEEEEESCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHH
Confidence 022333344444332 3458999999999999999
Q ss_pred HHHHhCCCc---------------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 362 RQLRMDGWP---------------------------------------ALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 362 ~~L~~~~~~---------------------------------------~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..|...++. +..+||+|++.+|..+++.|++|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 988643221 78999999999999999999999999999999
Q ss_pred ccccCCCc--cCeEEEEcCCCccc
Q 013965 403 VAARGLGN--CACVIIVLCTFVLY 424 (433)
Q Consensus 403 ~~~~Gldi--~~~Vi~~d~p~~~~ 424 (433)
++++|||+ +++||+++.|.+..
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~ 562 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQ 562 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSS
T ss_pred HHhcCCCCCCceEEEecCcccCcc
Confidence 99999999 88888777765543
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.6e-42 Score=350.21 Aligned_cols=357 Identities=17% Similarity=0.195 Sum_probs=265.2
Q ss_pred CCCCCCCCccccccccChhhccCCHHHHHHHHHhcCcee-ccCCCCCCCCCCcCCCCCHHHHHHH-----HHCCCCCCcH
Q 013965 51 LDLDGLTPFEKNFYVESPSVAAMSEREVEEYRQQREITV-EGRDVPKPVKSFRDVGFPDYVMQEI-----SKAGFFEPTP 124 (433)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l-----~~~g~~~~~~ 124 (433)
+....+.+..+.+....+.+..++++++.....+....+ .|.. ++++ +++. ...+ ...|| .|+|
T Consensus 17 r~~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld~~-l~ea-~a~vrea~~r~lG~-~pt~ 86 (844)
T 1tf5_A 17 RTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TDDL-LVEA-FAVVREASRRVTGM-FPFK 86 (844)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HHHH-HHHH-HHHHHHHHHHHHSC-CCCH
T ss_pred HHHHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hHHH-HHHH-HHHHHHHHHHHcCC-CCcH
Confidence 344556666777778889999999999977666543332 2221 1211 2222 2211 24799 9999
Q ss_pred HHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEE
Q 013965 125 IQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKST 204 (433)
Q Consensus 125 ~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~ 204 (433)
+|..++|.+++|+ ++.|+||+|||++|.+|++..... ++.++||+||++||.|.++++..++...++++.
T Consensus 87 VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 87 VQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9999999999998 999999999999999999865443 567999999999999999999999998999999
Q ss_pred EEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC------CcccccceeEeeccchhhh-cCC--------------
Q 013965 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DMG-------------- 262 (433)
Q Consensus 205 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lVvDEah~~~-~~~-------------- 262 (433)
+++||.+... +....+++|+|+||++| .+++... ...++.+.++||||||+|+ |++
T Consensus 157 ~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 157 LNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp ECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 9999986543 34445799999999999 6766543 2457889999999999988 664
Q ss_pred -cHHHHHHHHHhcC---------CCCcEE-----------------EEEeccchH---HHHH--HHHhcC-CCeEE----
Q 013965 263 -FEPQIKKILSQIR---------PDRQTL-----------------YWSATWPKE---VEHL--ARQYLY-NPYKV---- 305 (433)
Q Consensus 263 -~~~~~~~i~~~~~---------~~~~~l-----------------~~SAT~~~~---~~~~--~~~~~~-~~~~~---- 305 (433)
|...+..++..++ +.+|++ ++|||.+.. +... +..++. +...+
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 6788999999987 367887 899998643 3332 222221 11111
Q ss_pred ---EeCCCC----------------------cc------cccce------------------------------------
Q 013965 306 ---IIGSPD----------------------LK------ANHAI------------------------------------ 318 (433)
Q Consensus 306 ---~~~~~~----------------------~~------~~~~~------------------------------------ 318 (433)
++.... .. ....+
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~ 394 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT 394 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE
Confidence 110000 00 00000
Q ss_pred -----------eeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHH
Q 013965 319 -----------RQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 386 (433)
Q Consensus 319 -----------~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~ 386 (433)
.+.+.+....+|...+.+.+... ..+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+
T Consensus 395 IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 395 IPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQII 474 (844)
T ss_dssp CCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHH
T ss_pred ecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHH
Confidence 01133456788999999888653 356789999999999999999999999999999999988888777
Q ss_pred HHHHhcCCCCEEEEccccccCCCcc----------CeEEEEcCCCcccccccCCC
Q 013965 387 LSEFKAGKSPIMTATDVAARGLGNC----------ACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 387 ~~~f~~g~~~iLvaT~~~~~Gldi~----------~~Vi~~d~p~~~~~~l~~~~ 431 (433)
.++|+.| .|+||||+++||+||. .+||++|+|.+...|..+.-
T Consensus 475 ~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~G 527 (844)
T 1tf5_A 475 EEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 527 (844)
T ss_dssp TTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHT
T ss_pred HHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcC
Confidence 7666665 6999999999999993 39999999999988875543
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-41 Score=356.12 Aligned_cols=311 Identities=20% Similarity=0.203 Sum_probs=201.2
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+|+..|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ .+.++++|||+||++|+.|+.+++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999887642 2236789999999999999999999998
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeeccchhhhcCCcHHH-HHHHHHh-
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGFEPQ-IKKILSQ- 273 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDEah~~~~~~~~~~-~~~i~~~- 273 (433)
...++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++|||||||++...+.... +..++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8778999999999987777777778899999999999999988766 788999999999999887653222 2233222
Q ss_pred ---cCCCCcEEEEEeccch-----------HHHHHHH------------------HhcCCCeEEEeCCCCccccc-----
Q 013965 274 ---IRPDRQTLYWSATWPK-----------EVEHLAR------------------QYLYNPYKVIIGSPDLKANH----- 316 (433)
Q Consensus 274 ---~~~~~~~l~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~----- 316 (433)
..+..+++++|||++. .+..+.. .++..|..............
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 1567899999999852 2222221 12222221111110000000
Q ss_pred ------------c---------ee----------eee-------------------------------------------
Q 013965 317 ------------A---------IR----------QHV------------------------------------------- 322 (433)
Q Consensus 317 ------------~---------~~----------~~~------------------------------------------- 322 (433)
. +. +.+
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 000
Q ss_pred ----------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeCC
Q 013965 323 ----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMDT 353 (433)
Q Consensus 323 ----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s 353 (433)
.......|...|.+++... ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0000234666677777652 356799999999
Q ss_pred cccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEccccccCCCc--cCeEEEEc
Q 013965 354 KKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLGN--CACVIIVL 418 (433)
Q Consensus 354 ~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi--~~~Vi~~d 418 (433)
++.++.+++.|+.. |.....+||+|++.+|..++++|++ |+.+|||||+++++|||+ +++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566778999999999999999999 999999999999999999 99999999
Q ss_pred CCCcccccccCC
Q 013965 419 CTFVLYLTLGPL 430 (433)
Q Consensus 419 ~p~~~~~~l~~~ 430 (433)
+|.+...|+.+.
T Consensus 721 ~p~s~~~~iQr~ 732 (797)
T 4a2q_A 721 YSGNVTKMIQVR 732 (797)
T ss_dssp CCSCHHHHHTC-
T ss_pred CCCCHHHHHHhc
Confidence 999999998764
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.3e-41 Score=361.47 Aligned_cols=287 Identities=23% Similarity=0.254 Sum_probs=234.2
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
..|| +|+|+|.++++.+++|+|++++||||||||++|+++++..+.. ++++||++||++||.|+++.+.++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHHHHHHh
Confidence 3677 6999999999999999999999999999999888888776632 778999999999999999999998
Q ss_pred ccCCCceEEEEECCccC---hHhHHHhhcC-CcEEEeChHHHHHHHHcCCcccccceeEeeccchhh----------hc-
Q 013965 196 GASSKIKSTCIYGGVPK---GPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM----------LD- 260 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~----------~~- 260 (433)
+ ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++ ++
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 7 778999999999987 5566667665 99999999999888764 55788999999999754 45
Q ss_pred CCcHHH-HHHHHHhcC-----------CCCcEEEEEec-cchHHH-HHHHHhcCCCeEEEeCCCCcccccceeeeeeccC
Q 013965 261 MGFEPQ-IKKILSQIR-----------PDRQTLYWSAT-WPKEVE-HLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVS 326 (433)
Q Consensus 261 ~~~~~~-~~~i~~~~~-----------~~~~~l~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (433)
++|... +..++..++ ++.|++++||| .|..+. .+....+. +.+.... ....++.+.+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec-
Confidence 888888 888888777 88999999999 565544 23344433 1112111 2344555555544
Q ss_pred hhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceE-EEcCCCCHHHHHHHHHHHhcCCCCEEEE----c
Q 013965 327 ESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPAL-SIHGDKSQAERDWVLSEFKAGKSPIMTA----T 401 (433)
Q Consensus 327 ~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~lh~~~~~~~r~~~~~~f~~g~~~iLva----T 401 (433)
++...|.+++... ++++||||++++.|+.++..|+..++.+. .+||. |.+ +++|++|+.+|||| |
T Consensus 296 --~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp --CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTH
T ss_pred --CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCC
Confidence 3556667777663 47899999999999999999999999998 99992 555 99999999999999 9
Q ss_pred cccccCCCc---cCeEEEEcCCC---cccccccCC
Q 013965 402 DVAARGLGN---CACVIIVLCTF---VLYLTLGPL 430 (433)
Q Consensus 402 ~~~~~Gldi---~~~Vi~~d~p~---~~~~~l~~~ 430 (433)
+++++|||+ +++||+||+|. |+..+++|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~ 400 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPR 400 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCH
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHH
Confidence 999999999 48999999999 777666654
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.3e-41 Score=355.05 Aligned_cols=312 Identities=20% Similarity=0.205 Sum_probs=201.5
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
-.|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+...+ .+.+.++|||+||++|+.|+.++++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999988776532 223678999999999999999999999
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc-ccccceeEeeccchhhhcCCc-HHHHHHHHHh
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT-NLRRVTYLVLDEADRMLDMGF-EPQIKKILSQ 273 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~-~l~~~~~lVvDEah~~~~~~~-~~~~~~i~~~ 273 (433)
+...++++..++|+.....+...+..+++|+|+||++|.+++..... .+.++++||+||||++...+. ...+..++..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88888999999999877766666677899999999999999988766 688999999999999887653 2223233322
Q ss_pred ----cCCCCcEEEEEeccch-----------HHHHHH------------------HHhcCCCeEEEeCCCCccccc----
Q 013965 274 ----IRPDRQTLYWSATWPK-----------EVEHLA------------------RQYLYNPYKVIIGSPDLKANH---- 316 (433)
Q Consensus 274 ----~~~~~~~l~~SAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~---- 316 (433)
..+..+++++|||+.. .+..+. ..+...|..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1567899999999842 111211 122222322221111000000
Q ss_pred -------------c---------ee----------eee------------------------------------------
Q 013965 317 -------------A---------IR----------QHV------------------------------------------ 322 (433)
Q Consensus 317 -------------~---------~~----------~~~------------------------------------------ 322 (433)
. .. +.+
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 000
Q ss_pred -----------------------------------------------eccChhHHHHHHHHHHHhh---cCCCeEEEEeC
Q 013965 323 -----------------------------------------------DIVSESQKYNKLVKLLEDI---MDGSRILIFMD 352 (433)
Q Consensus 323 -----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~ 352 (433)
.......|...|.++|... ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000234666677777654 34579999999
Q ss_pred CcccHHHHHHHHHhC------------CCceEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEccccccCCCc--cCeEEEE
Q 013965 353 TKKGCDQITRQLRMD------------GWPALSIHGDKSQAERDWVLSEFKA-GKSPIMTATDVAARGLGN--CACVIIV 417 (433)
Q Consensus 353 s~~~~~~l~~~L~~~------------~~~~~~lh~~~~~~~r~~~~~~f~~-g~~~iLvaT~~~~~Gldi--~~~Vi~~ 417 (433)
+++.++.+++.|... |.....+||+|++.+|.+++++|++ |+.+|||||+++++|||+ +++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999976 5556677899999999999999999 999999999999999999 9999999
Q ss_pred cCCCcccccccCC
Q 013965 418 LCTFVLYLTLGPL 430 (433)
Q Consensus 418 d~p~~~~~~l~~~ 430 (433)
|+|.+...|+.+.
T Consensus 720 D~p~s~~~~iQr~ 732 (936)
T 4a2w_A 720 EYSGNVTKMIQVR 732 (936)
T ss_dssp SCCSCSHHHHCC-
T ss_pred CCCCCHHHHHHhc
Confidence 9999999988764
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=345.45 Aligned_cols=287 Identities=16% Similarity=0.164 Sum_probs=227.6
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+| +|+|+|.++++.+++++++++++|||+|||++|.+|++..+.. +.++||++||++|++|+++++.+++
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 455 4999999999999999999999999999999999999887753 6799999999999999999999976
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
. .+..++|+.... ..++|+|+||++|..++.++...+.++++|||||||++.+++++..+..++..+++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 4 567788876543 35899999999999998887778899999999999999999999999999999999
Q ss_pred CCcEEEEEeccchHHHHHHHH---hcCCCeEEEeCCCCcccccceeeeeec---------cCh-----------------
Q 013965 277 DRQTLYWSATWPKEVEHLARQ---YLYNPYKVIIGSPDLKANHAIRQHVDI---------VSE----------------- 327 (433)
Q Consensus 277 ~~~~l~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----------------- 327 (433)
+.|++++|||+++.. +++.+ ....+..+...... ...+.+.+.. ...
T Consensus 223 ~~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r---p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR---PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp TCEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC---SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC---cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 999999999998643 33333 33445554443321 1112222111 000
Q ss_pred -----------------------------hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCC---------
Q 013965 328 -----------------------------SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------- 369 (433)
Q Consensus 328 -----------------------------~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------- 369 (433)
......++..+... ...++||||++++.|+.++..|...++
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11223344444332 345899999999999999999876443
Q ss_pred ------------------------------ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEE-
Q 013965 370 ------------------------------PALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVII- 416 (433)
Q Consensus 370 ------------------------------~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~- 416 (433)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+ +++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 27889999999999999999999999999999999999999 888888
Q ss_pred ---EcC----CCccccccc
Q 013965 417 ---VLC----TFVLYLTLG 428 (433)
Q Consensus 417 ---~d~----p~~~~~~l~ 428 (433)
||. |.+...|+.
T Consensus 458 ~~kfd~~~~rp~s~~~y~Q 476 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQ 476 (1010)
T ss_dssp SEEECSSCEEECCHHHHHH
T ss_pred CcccCCcCCccCCHHHHhH
Confidence 888 667666653
No 32
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.5e-40 Score=292.84 Aligned_cols=216 Identities=51% Similarity=0.894 Sum_probs=189.5
Q ss_pred ccCCCCCCCCCCcC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCC-
Q 013965 90 EGRDVPKPVKSFRD-VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL- 167 (433)
Q Consensus 90 ~~~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~- 167 (433)
+....|+|..+|++ +++++.+++.+.+.||.+|+|+|.++++.+++|+++++++|||+|||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 45678999999999 7999999999999999999999999999999999999999999999999999999887643211
Q ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 168 APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 168 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
....++++||++||++|+.|+.+++.++. ..++++..++|+.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12347889999999999999999999986 45788999999998888888888899999999999999998888889999
Q ss_pred eeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEE
Q 013965 248 TYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (433)
Q Consensus 248 ~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (433)
++||+||||++.+++|...+..++..++++.|++++|||+|++++++++.++.+|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999998765
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-39 Score=320.98 Aligned_cols=299 Identities=20% Similarity=0.226 Sum_probs=230.5
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+... +.++|||+|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY-------GGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS-------CSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999999 999999999999999999988877621 66899999999999999999999875555
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
.++..++|+...... ......++|+|+||++|...+......+.++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 688888887765543 3334568999999999999988877778899999999999988665555566666666788999
Q ss_pred EEEEeccchH---HHHHHHHhcCCCeEEEeCCCCccccc-----ceeee-------------------------------
Q 013965 281 LYWSATWPKE---VEHLARQYLYNPYKVIIGSPDLKANH-----AIRQH------------------------------- 321 (433)
Q Consensus 281 l~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------------------------------- 321 (433)
+++|||+... +..+...+........ ......... .....
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYR-SENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEEC-CTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeecc-CCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999743 3333333222111111 000000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 013965 322 -------------------------------------------------------------------------------- 321 (433)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (433)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred -----------------eeccChhHHHHHHHHHHHhh---cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcC-----
Q 013965 322 -----------------VDIVSESQKYNKLVKLLEDI---MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHG----- 376 (433)
Q Consensus 322 -----------------~~~~~~~~k~~~l~~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~----- 376 (433)
........|...+.+++... ..+.++||||++++.++.+++.|...++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 00002345667777777764 36779999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 377 ---DKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 377 ---~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+|+..+|.+++++|++|+.+|||||+++++|+|+ +++||++|+|.+...|+.+
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr 456 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQR 456 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999998777654
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-39 Score=296.57 Aligned_cols=234 Identities=42% Similarity=0.719 Sum_probs=200.7
Q ss_pred CceeccCCCCC--CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 86 EITVEGRDVPK--PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 86 ~i~~~~~~~p~--~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
.+.+++...|. ++.+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 35567777777 8999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCC----CCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc
Q 013965 164 QPFL----APGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239 (433)
Q Consensus 164 ~~~~----~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 239 (433)
.... ....++++||++||++|+.|+.+++.+++...++++..++|+.....+...+..+++|+|+||++|.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp TCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT
T ss_pred hccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 4311 122357899999999999999999999988888999999999988888888888999999999999999998
Q ss_pred CCcccccceeEeeccchhhhcCCcHHHHHHHHHhc--CC--CCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccc
Q 013965 240 HNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI--RP--DRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKAN 315 (433)
Q Consensus 240 ~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (433)
....+.++++||+||||++++++|...+..++..+ +. +.|++++|||++++++.+++.++.+|..+.++... ...
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~ 246 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG-STS 246 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------
T ss_pred CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC-CCc
Confidence 88888999999999999999999999999999853 33 78999999999999999999999999988877654 233
Q ss_pred cceee
Q 013965 316 HAIRQ 320 (433)
Q Consensus 316 ~~~~~ 320 (433)
.+++|
T Consensus 247 ~~i~q 251 (253)
T 1wrb_A 247 DSIKQ 251 (253)
T ss_dssp -----
T ss_pred CCcee
Confidence 44443
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.6e-41 Score=359.40 Aligned_cols=275 Identities=19% Similarity=0.265 Sum_probs=219.6
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+||. | |+|.++|+.++.|+|++++||||||||+ |.+|++..+... ++++||++||++|+.|+++.+.++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHH
Confidence 47999 9 9999999999999999999999999998 899998887653 678999999999999999999999
Q ss_pred ccCCCc----eEEEEECCccChHh---HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHH
Q 013965 196 GASSKI----KSTCIYGGVPKGPQ---VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (433)
Q Consensus 196 ~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~ 268 (433)
+...++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ +...++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887663 344455 99999999999988765 66899999999999998 567778
Q ss_pred HHHHhc-----------CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH
Q 013965 269 KILSQI-----------RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (433)
Q Consensus 269 ~i~~~~-----------~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (433)
.++..+ +...|++++|||++.. ..++..++.++..+.+.... .....+.+.+. ..++...|.++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHH
Confidence 777666 3568999999999887 54444443333322222222 22233444433 34455566666
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEE----ccccccCCCc--c
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA----TDVAARGLGN--C 411 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLva----T~~~~~Gldi--~ 411 (433)
+... ++++||||++++.|+.+++.|+.. +.+..+||++ ..++++|++|+.+|||| |+++++|||+ +
T Consensus 271 l~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 271 LEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp HTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTT
T ss_pred Hhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCc
Confidence 6653 568999999999999999999988 9999999998 37899999999999999 9999999999 6
Q ss_pred -CeEEEEcCC
Q 013965 412 -ACVIIVLCT 420 (433)
Q Consensus 412 -~~Vi~~d~p 420 (433)
++||++|+|
T Consensus 343 I~~VI~~~~P 352 (1054)
T 1gku_B 343 IRFAVFVGCP 352 (1054)
T ss_dssp CCEEEEESCC
T ss_pred ccEEEEeCCC
Confidence 999999999
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=352.23 Aligned_cols=307 Identities=22% Similarity=0.271 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHH-HHHHHHhccC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQI-QQESTKFGAS 198 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~-~~~~~~~~~~ 198 (433)
..|+|+|.++++.+++|+++++++|||+|||++|++|++..+.... ..+.+.++|||+|+++|+.|+ .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK--KASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH--HHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc--ccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 3689999999999999999999999999999999999998776431 011236799999999999999 9999998865
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHH------HcCCcccccceeEeeccchhhhcCC-cHHHHHHHH
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDML------ESHNTNLRRVTYLVLDEADRMLDMG-FEPQIKKIL 271 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l------~~~~~~l~~~~~lVvDEah~~~~~~-~~~~~~~i~ 271 (433)
++++..++|+.....+...+...++|+|+||++|.+.+ ......+.++++|||||||++.... +...+...+
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 58899999998777666777788999999999999888 3445678899999999999885543 222222222
Q ss_pred Hh----cC---------CCCcEEEEEeccchH-----------HHHHHHHh------------------cCCCeEEEeCC
Q 013965 272 SQ----IR---------PDRQTLYWSATWPKE-----------VEHLARQY------------------LYNPYKVIIGS 309 (433)
Q Consensus 272 ~~----~~---------~~~~~l~~SAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~ 309 (433)
.. .. +..+++++|||+... +..+...+ ...|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 11 12 678999999999762 12222211 12222111100
Q ss_pred CCccccc----------------ce---eeee------------------------------------------------
Q 013965 310 PDLKANH----------------AI---RQHV------------------------------------------------ 322 (433)
Q Consensus 310 ~~~~~~~----------------~~---~~~~------------------------------------------------ 322 (433)
....... .+ ...-
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 0000
Q ss_pred ---------------------------ecc-------------------------ChhHHHHHHHHHHHhhc---C-CCe
Q 013965 323 ---------------------------DIV-------------------------SESQKYNKLVKLLEDIM---D-GSR 346 (433)
Q Consensus 323 ---------------------------~~~-------------------------~~~~k~~~l~~~l~~~~---~-~~~ 346 (433)
... ....|...|.++|.... . +.+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 01122223333443321 2 679
Q ss_pred EEEEeCCcccHHHHHHHHHhC------CCceEEEcCC--------CCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--
Q 013965 347 ILIFMDTKKGCDQITRQLRMD------GWPALSIHGD--------KSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-- 410 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~------~~~~~~lh~~--------~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-- 410 (433)
+||||++++.++.+++.|... |+.+..+||+ |++.+|.+++++|++|+.+|||||+++++|||+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 999999999999999999999999999999999
Q ss_pred cCeEEEEcCCCcccccccC
Q 013965 411 CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 411 ~~~Vi~~d~p~~~~~~l~~ 429 (433)
+++||+||+|.+...|+++
T Consensus 483 v~~VI~~d~p~s~~~~~Qr 501 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQA 501 (699)
T ss_dssp CCCCEEESCCCCHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 9999999999999888764
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.3e-40 Score=331.52 Aligned_cols=339 Identities=18% Similarity=0.202 Sum_probs=228.7
Q ss_pred ChhhccCCHHHHHHHHHhcCceec-cCCCCCCCCCCcCCCCCHHHHHHHHH-----CCCCCCcHHHHHHHHhHhcCCcEE
Q 013965 67 SPSVAAMSEREVEEYRQQREITVE-GRDVPKPVKSFRDVGFPDYVMQEISK-----AGFFEPTPIQAQGWPMALKGRDLI 140 (433)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p~~~~~f~~~~l~~~l~~~l~~-----~g~~~~~~~Q~~~i~~~l~g~~~l 140 (433)
.+....++++++.....+....+. |. ++++ +.++....+.+ .|+ .|+|+|..+++.++.|+ +
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~-------~ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--I 91 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE-------VLEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--I 91 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC-------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--E
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC-------Chhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--e
Confidence 456777888887655544222221 11 1222 22333333333 464 89999999999999998 9
Q ss_pred EEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh
Q 013965 141 GIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ 220 (433)
Q Consensus 141 v~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 220 (433)
+.++||+|||++|.+|++..... ++.++|++||++||.|+++.+..++...++++.+++||.+.. .+.+.
T Consensus 92 aem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~ 161 (853)
T 2fsf_A 92 AEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREA 161 (853)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHH
T ss_pred eeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHh
Confidence 99999999999999999866543 567999999999999999999999999999999999998753 44455
Q ss_pred cCCcEEEeChHHH-HHHHHcCC------cccccceeEeeccchhhh-cCC---------------cHHHHHHHHHhcCC-
Q 013965 221 KGVEIVIATPGRL-IDMLESHN------TNLRRVTYLVLDEADRML-DMG---------------FEPQIKKILSQIRP- 276 (433)
Q Consensus 221 ~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~~~~lVvDEah~~~-~~~---------------~~~~~~~i~~~~~~- 276 (433)
.+++|+|+||++| .+++.... ..++++.++|+||||+|+ +.+ |...+..++..+++
T Consensus 162 ~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~ 241 (853)
T 2fsf_A 162 YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQ 241 (853)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------
T ss_pred cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhh
Confidence 5799999999999 78887543 457889999999999998 543 56778888877764
Q ss_pred -------------------CCcEE------------------------EEEeccchHHHHH-----HHHhcC--------
Q 013965 277 -------------------DRQTL------------------------YWSATWPKEVEHL-----ARQYLY-------- 300 (433)
Q Consensus 277 -------------------~~~~l------------------------~~SAT~~~~~~~~-----~~~~~~-------- 300 (433)
.+|++ ++|||.+.....+ +..++.
T Consensus 242 ~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~ 321 (853)
T 2fsf_A 242 EKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVK 321 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceee
Confidence 45654 8999976422211 111110
Q ss_pred CC-----------------------------eEEEeCCCCccccccee--------------------------------
Q 013965 301 NP-----------------------------YKVIIGSPDLKANHAIR-------------------------------- 319 (433)
Q Consensus 301 ~~-----------------------------~~~~~~~~~~~~~~~~~-------------------------------- 319 (433)
++ ..+.+.... .....+.
T Consensus 322 d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~ 400 (853)
T 2fsf_A 322 DGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD 400 (853)
T ss_dssp -----------------------------------CCCCC-EEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE
T ss_pred cCcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc
Confidence 00 011111111 0011111
Q ss_pred ---------------eeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHH
Q 013965 320 ---------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAER 383 (433)
Q Consensus 320 ---------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r 383 (433)
+.+.+....+|...+.+.+... ..+.++||||+|++.++.|+..|++.|+++.++||++.+.++
T Consensus 401 vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa 480 (853)
T 2fsf_A 401 TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEA 480 (853)
T ss_dssp EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHH
T ss_pred EEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 1123457788999999988664 456789999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCCCEEEEccccccCCCc-c--------------------------------------CeEEEEcCCCccc
Q 013965 384 DWVLSEFKAGKSPIMTATDVAARGLGN-C--------------------------------------ACVIIVLCTFVLY 424 (433)
Q Consensus 384 ~~~~~~f~~g~~~iLvaT~~~~~Gldi-~--------------------------------------~~Vi~~d~p~~~~ 424 (433)
..+.++|+.| .|+|||++++||+|| . .+||++++|.+..
T Consensus 481 ~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~r 558 (853)
T 2fsf_A 481 AIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR 558 (853)
T ss_dssp HHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHH
T ss_pred HHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHH
Confidence 8888899888 599999999999999 4 3999999999988
Q ss_pred ccccCC
Q 013965 425 LTLGPL 430 (433)
Q Consensus 425 ~~l~~~ 430 (433)
.|..+.
T Consensus 559 iy~qr~ 564 (853)
T 2fsf_A 559 IDNQLR 564 (853)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 876544
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-39 Score=359.46 Aligned_cols=321 Identities=17% Similarity=0.183 Sum_probs=243.7
Q ss_pred cCceeccCCCCCCCCCCcCCC---CCHHHHHHHHHCCCCCCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHH
Q 013965 85 REITVEGRDVPKPVKSFRDVG---FPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 85 ~~i~~~~~~~p~~~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
+.+..+....+.++..+..++ |.+...+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..
T Consensus 887 ~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~ 966 (1724)
T 4f92_B 887 HLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRM 966 (1724)
T ss_dssp TCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHH
T ss_pred cccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHH
Confidence 344444445555666666554 667788888888999999999999999975 5789999999999999999999999
Q ss_pred HhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH-hccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc
Q 013965 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK-FGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 239 (433)
+...+ +.++||++|+++||.|+++.+.+ ++...++++..++|+...+.. ....++|+|||||+|..++.+
T Consensus 967 l~~~~------~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~ 1037 (1724)
T 4f92_B 967 LLQSS------EGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRR 1037 (1724)
T ss_dssp HHHCT------TCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTT
T ss_pred HHhCC------CCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhC
Confidence 87643 66899999999999999999976 666788999999987654322 234689999999999888876
Q ss_pred CC--cccccceeEeeccchhhhcCCcHHHHHHHHH-------hcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCC
Q 013965 240 HN--TNLRRVTYLVLDEADRMLDMGFEPQIKKILS-------QIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSP 310 (433)
Q Consensus 240 ~~--~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 310 (433)
.. ..++++++||+||+|++.+. .+..++.++. ..+++.|++++|||+++ .++++.++...+..+.....
T Consensus 1038 ~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~ 1115 (1724)
T 4f92_B 1038 WKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP 1115 (1724)
T ss_dssp TTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG
T ss_pred cccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC
Confidence 43 34789999999999988764 6666665544 34678999999999975 67777776554432222222
Q ss_pred CcccccceeeeeeccCh---hHH----HHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC----------------
Q 013965 311 DLKANHAIRQHVDIVSE---SQK----YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD---------------- 367 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~---~~k----~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------- 367 (433)
. ..+..++..+..... ..+ ...+...+.....++++||||+|++.|+.++..|...
T Consensus 1116 ~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 1194 (1724)
T 4f92_B 1116 N-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEK 1194 (1724)
T ss_dssp G-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHH
T ss_pred C-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHH
Confidence 2 233334444332221 111 2234455666677889999999999999988776421
Q ss_pred ------------------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEE
Q 013965 368 ------------------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIV 417 (433)
Q Consensus 368 ------------------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~ 417 (433)
...+..+|++|++.+|..+++.|++|.++|||||+++++|||+ +..||+.
T Consensus 1195 ~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1195 DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM 1263 (1724)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE
T ss_pred HHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe
Confidence 2458899999999999999999999999999999999999999 7777763
No 39
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=291.22 Aligned_cols=230 Identities=33% Similarity=0.564 Sum_probs=199.5
Q ss_pred HHHHHHHhcCceeccCCCCCCCCCCcCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 77 EVEEYRQQREITVEGRDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 77 ~~~~~~~~~~i~~~~~~~p~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
++..+++++.+.+++.+.|.|+.+|+++ ++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH-HHhhcCCcEEEeChH
Q 013965 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV-RDLQKGVEIVIATPG 231 (433)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~Iiv~Tp~ 231 (433)
|++|++..+... ...++++||++||++|+.|+++++.+++...++++..+.|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 234778999999999999999999999888888888777654322221 222457899999999
Q ss_pred HHHHHHHcC--CcccccceeEeeccchhhhc---CCcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHHHHhcCCCeEE
Q 013965 232 RLIDMLESH--NTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (433)
Q Consensus 232 ~l~~~l~~~--~~~l~~~~~lVvDEah~~~~---~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 305 (433)
+|.+++... ...+.++++||+||||++.+ .+|...+..++..+ +++.|+++||||+|++++.+++.++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999876 45688999999999999988 56889999988776 4578999999999999999999999999998
Q ss_pred EeCCC
Q 013965 306 IIGSP 310 (433)
Q Consensus 306 ~~~~~ 310 (433)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 87654
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-39 Score=360.29 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=222.6
Q ss_pred CCCCCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCC---CCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 118 GFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPF---LAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~---~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
||++++++|++++|.++. ++|++++||||||||++|.+|++..+..... ....++.++||++|+++||+|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999875 7899999999999999999999999875432 122347899999999999999999999
Q ss_pred HhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCc--ccccceeEeeccchhhhcCCcHHHHHHHH
Q 013965 194 KFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNT--NLRRVTYLVLDEADRMLDMGFEPQIKKIL 271 (433)
Q Consensus 194 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~~~~lVvDEah~~~~~~~~~~~~~i~ 271 (433)
+.....++++..++|+.....+ ....++|+|||||+|..++.+... .++++++||+||+|.+.+ +.+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998865432 234689999999999777665432 378899999999997765 5777666555
Q ss_pred H-------hcCCCCcEEEEEeccchHHHHHHHHhcCCCeE--EEeCCCCcccccceeeeeeccCh---hHHHH----HHH
Q 013965 272 S-------QIRPDRQTLYWSATWPKEVEHLARQYLYNPYK--VIIGSPDLKANHAIRQHVDIVSE---SQKYN----KLV 335 (433)
Q Consensus 272 ~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~k~~----~l~ 335 (433)
. ..+++.|+|++|||+|+ .+++++++..++.. ..+... ..+..+++.+..... ..+.. .+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 4 34688999999999975 66777665443211 112211 233344444332222 11222 222
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC-------------------------------------CCceEEEcCCC
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMD-------------------------------------GWPALSIHGDK 378 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lh~~~ 378 (433)
+.+.+...++++||||+|++.|+.++..|.+. ...+.++||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 33334445679999999999999999887531 24588999999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE
Q 013965 379 SQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII 416 (433)
Q Consensus 379 ~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~ 416 (433)
++++|..+++.|++|.++|||||+++++|||+ +..||+
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI 427 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 427 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEE
Confidence 99999999999999999999999999999999 666665
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.8e-39 Score=338.55 Aligned_cols=279 Identities=18% Similarity=0.166 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
+|+|+|.++++.+++|++++++||||+|||++|+++++..+.. +.++||++|+++|+.|+++++.++.. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 5899999999999999999999999999999999998876653 67899999999999999999998654 4
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
+++..++|+.... ..++|+|+||++|..++......+.++++|||||||++.++++...+..++..++++.|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7888888876533 458999999999999998877778999999999999999999999999999999999999
Q ss_pred EEEEeccchHHHHHHHHhc---CCCeEEEeCCCCcccccceeeee-----------------------------------
Q 013965 281 LYWSATWPKEVEHLARQYL---YNPYKVIIGSPDLKANHAIRQHV----------------------------------- 322 (433)
Q Consensus 281 l~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 322 (433)
+++|||+++.. +++.++. ..+..+...... ...+.+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 99999997643 4444432 122222211111 00111100
Q ss_pred ----------------------------------------------------------eccChhHHHHHHHHHHHhhcCC
Q 013965 323 ----------------------------------------------------------DIVSESQKYNKLVKLLEDIMDG 344 (433)
Q Consensus 323 ----------------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~ 344 (433)
.......+...+++.+... ..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~ 336 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-EL 336 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CC
Confidence 0011223455666666654 44
Q ss_pred CeEEEEeCCcccHHHHHHHHHhCCC---------------------------------------ceEEEcCCCCHHHHHH
Q 013965 345 SRILIFMDTKKGCDQITRQLRMDGW---------------------------------------PALSIHGDKSQAERDW 385 (433)
Q Consensus 345 ~~~lVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lh~~~~~~~r~~ 385 (433)
.++||||++++.|+.++..|...++ .+..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 6899999999999999999977655 5799999999999999
Q ss_pred HHHHHhcCCCCEEEEccccccCCCc-cCeEEEEcCCC
Q 013965 386 VLSEFKAGKSPIMTATDVAARGLGN-CACVIIVLCTF 421 (433)
Q Consensus 386 ~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d~p~ 421 (433)
+++.|++|..+|||||+++++|||+ ...||+.++|.
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k 453 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRK 453 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEE
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCCceEEEecccc
Confidence 9999999999999999999999999 77778766665
No 42
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=9.2e-39 Score=287.60 Aligned_cols=212 Identities=31% Similarity=0.507 Sum_probs=180.4
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 013965 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (433)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (433)
.+.|.+..+|+++++++.+++.+.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~ 97 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FK 97 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SC
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999887532 23
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcC-CcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKG-VEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
++++||++||++|+.|+.+++++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++......+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 678999999999999999999999888888999999988776666666555 8999999999999998877788899999
Q ss_pred eeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 251 VLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 251 VvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
|+||||++.+++|...+..++..+++..|++++|||+++++.++++.++.+|..+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999877543
No 43
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=287.30 Aligned_cols=208 Identities=46% Similarity=0.709 Sum_probs=190.7
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEE
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIV 175 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~ 175 (433)
.+..+|+++++++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+.... .++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 3467899999999999999999999999999999999999999999999999999999999999887542 26789
Q ss_pred EEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc-CCcccccceeEeecc
Q 013965 176 LVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDE 254 (433)
Q Consensus 176 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lVvDE 254 (433)
||++||++|+.|+.+++++++...++++..++|+.....+...+..+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888999999999888777777788999999999999998876 445688999999999
Q ss_pred chhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 255 ADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 255 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
||++.+++|...+..++..+++++|+++||||++++++++++.++.+|..+.+.
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999887643
No 44
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=292.58 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=188.0
Q ss_pred CceeccCCCCCC---CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHH
Q 013965 86 EITVEGRDVPKP---VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 86 ~i~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
.+.+.+.+.+.| ..+|++++|++.+++.|.++||..|+++|.++||.++.+ +|++++||||||||++|++|++.+
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 344555555554 578999999999999999999999999999999999987 999999999999999999999998
Q ss_pred HhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc
Q 013965 161 VNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES 239 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~ 239 (433)
+... ..++++||++|||+||.|+++.+.+++... ++.+..++|+....... ..+++|+|+||++|.+++.+
T Consensus 156 l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~ 227 (300)
T 3fmo_B 156 VEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSK 227 (300)
T ss_dssp CCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTT
T ss_pred hhcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHh
Confidence 7543 237789999999999999999999988754 68888888887654322 45789999999999999966
Q ss_pred -CCcccccceeEeeccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 240 -HNTNLRRVTYLVLDEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 240 -~~~~l~~~~~lVvDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
....+.++++|||||||+|++ .+|...+..++..+++++|+++||||+++.+..+++.++.+|..+.+.
T Consensus 228 ~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 228 LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred cCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 456789999999999999998 689999999999999999999999999999999999999999888764
No 45
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.6e-38 Score=282.51 Aligned_cols=210 Identities=31% Similarity=0.486 Sum_probs=183.7
Q ss_pred cCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCC
Q 013965 91 GRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPG 170 (433)
Q Consensus 91 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~ 170 (433)
++..|.+..+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567788899999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCEEEEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCccccccee
Q 013965 171 DGPIVLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTY 249 (433)
Q Consensus 171 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~ 249 (433)
.++++||++||++|+.|+++++.+++... ++++..++|+.....+...+ .+++|+|+||++|.+++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 36789999999999999999999987664 78899999988766655544 47999999999999999887778899999
Q ss_pred EeeccchhhhcCC-cHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEE
Q 013965 250 LVLDEADRMLDMG-FEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (433)
Q Consensus 250 lVvDEah~~~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (433)
||+||||++.+++ |...+..++..+++..|++++|||+++++.+++..++.+|..+.
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999997 99999999999998999999999999999999999999987664
No 46
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-38 Score=282.23 Aligned_cols=208 Identities=35% Similarity=0.578 Sum_probs=186.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
+..+|+++++++.+.+.+.+.||.+|+++|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 34679999999999999999999999999999999999999999999999999999999999887542 2367899
Q ss_pred EEecCHHHHHHHHHHHHHhccCC----CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEee
Q 013965 177 VLAPTRELAVQIQQESTKFGASS----KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVv 252 (433)
|++||++|+.|+.+++.++.... ++++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999988765 68888899988766655555668999999999999999887778899999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCC
Q 013965 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (433)
Q Consensus 253 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (433)
||||++.+++|...+..++..++++.|++++|||+++++.++++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999998876544
No 47
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.5e-38 Score=275.38 Aligned_cols=202 Identities=33% Similarity=0.576 Sum_probs=186.0
Q ss_pred CCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEE
Q 013965 99 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVL 178 (433)
Q Consensus 99 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil 178 (433)
.+|+++++++.+++.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886532 236789999
Q ss_pred ecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 179 APTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 179 ~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
+||++|+.|+.+.+.++.... ++++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999988766 7889999999888777777778899999999999999998877889999999999999
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEE
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV 305 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 305 (433)
+.+.+|...+..++..++++.|++++|||+|+++..+++.++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999998764
No 48
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=279.48 Aligned_cols=212 Identities=35% Similarity=0.547 Sum_probs=188.3
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 95 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
+.++.+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 456788999999999999999999999999999999999999999999999999999999999988865322 1223778
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcC-CcccccceeEeec
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH-NTNLRRVTYLVLD 253 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~~~~lVvD 253 (433)
+||++||++|+.|+.+++++++...++++..++|+.....+...+ .+++|+|+||++|.+++... ...+.++++||+|
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999999988889999999998877665554 57999999999999988764 4567889999999
Q ss_pred cchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeC
Q 013965 254 EADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIG 308 (433)
Q Consensus 254 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 308 (433)
|||++.+++|...+..++..+++++|++++|||+++.++.+++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999887654
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.8e-38 Score=317.74 Aligned_cols=280 Identities=19% Similarity=0.244 Sum_probs=219.6
Q ss_pred HCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 116 KAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 116 ~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
..|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... +..++||+||++||.|.++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3688 99999999999999998 999999999999999999765543 557999999999999999999999
Q ss_pred ccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcC------CcccccceeEeeccchhhh-cC------
Q 013965 196 GASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESH------NTNLRRVTYLVLDEADRML-DM------ 261 (433)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~~~~lVvDEah~~~-~~------ 261 (433)
...+++++.+++||.+.. .+....+++|+|+||++| .+++... ...++.+.++||||||+|+ |.
T Consensus 176 ~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 999999999999998743 334445799999999999 7877654 3457889999999999998 42
Q ss_pred ---------CcHHHHHHHHHhcC---------CCCcEE-----------------EEEeccchHH---HHHH--HHhcC-
Q 013965 262 ---------GFEPQIKKILSQIR---------PDRQTL-----------------YWSATWPKEV---EHLA--RQYLY- 300 (433)
Q Consensus 262 ---------~~~~~~~~i~~~~~---------~~~~~l-----------------~~SAT~~~~~---~~~~--~~~~~- 300 (433)
+|...+..++..++ +.+|++ ++|||.+... .... ..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47889999999997 678888 8999987533 3222 22221
Q ss_pred C-------CeEEEeCCCC----------------------cc------ccccee--------------------------
Q 013965 301 N-------PYKVIIGSPD----------------------LK------ANHAIR-------------------------- 319 (433)
Q Consensus 301 ~-------~~~~~~~~~~----------------------~~------~~~~~~-------------------------- 319 (433)
+ +..+++.... .. ....+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 1111111100 00 000011
Q ss_pred ---------------------eeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCC
Q 013965 320 ---------------------QHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGD 377 (433)
Q Consensus 320 ---------------------~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~ 377 (433)
..+.+....+|...+.+.+... ..+.++||||+|++.++.|+..|.+.|+++.++||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 1123456778998888888654 356689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 378 KSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 378 ~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
+.+.++..+.++|+.| .|+|||++++||+||
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI 524 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDI 524 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCC
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccc
Confidence 8888888888888877 699999999999999
No 50
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2e-37 Score=273.27 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=186.8
Q ss_pred CCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe
Q 013965 100 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (433)
Q Consensus 100 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 179 (433)
+|+++++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999876432 223478899999
Q ss_pred cCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhh
Q 013965 180 PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRML 259 (433)
Q Consensus 180 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~ 259 (433)
||++|+.|+.+++.++... +++..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998765 77888999988887777788899999999999999998877788999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEe
Q 013965 260 DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVII 307 (433)
Q Consensus 260 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 307 (433)
+++|...+..++..++++.|++++|||++++++.+++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999987654
No 51
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-37 Score=278.25 Aligned_cols=212 Identities=30% Similarity=0.529 Sum_probs=184.0
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 013965 92 RDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGD 171 (433)
Q Consensus 92 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~ 171 (433)
...|+++.+|+++++++.+++.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467778899999999999999999999999999999999999999999999999999999999999887542 23
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEe
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 251 (433)
++++||++||++|+.|+.+++.++....++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999988888999999998876665555444 99999999999999988888889999999
Q ss_pred eccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCC
Q 013965 252 LDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGS 309 (433)
Q Consensus 252 vDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 309 (433)
+||||++.+++|...+..++..++++.|++++|||+++++..+++.++.+|..+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998776544
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.2e-37 Score=329.99 Aligned_cols=299 Identities=20% Similarity=0.206 Sum_probs=231.0
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHhc----CC--cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 104 VGFPDYVMQEISK-AGFFEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 104 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~----g~--~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
++.+..+.+.+.. ++| ++||+|.++++.++. ++ ++++++|||+|||++|+++++..+.. +.+++
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEE
Confidence 3566777777754 566 479999999999886 65 99999999999999999998876653 67999
Q ss_pred EEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH---HHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEee
Q 013965 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVv 252 (433)
|++||++|+.|+++.+.++....++++..+.+......+. ..+.. .++|+|+||+.+. ....+.++++||+
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 9999999999999999998877788888888766544332 33334 5999999997552 3456889999999
Q ss_pred ccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHH
Q 013965 253 DEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 332 (433)
Q Consensus 253 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (433)
||+|++ ......++..++.+.++++||||+++....++...+.++..+ .... .....+...+..... ..
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~-~~r~~i~~~~~~~~~---~~ 800 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPP-ARRLAVKTFVREYDS---MV 800 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCC-CBCBCEEEEEEECCH---HH
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCC-CCccccEEEEecCCH---HH
Confidence 999993 445566677777889999999999877776666555443322 1111 122233333333332 22
Q ss_pred HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc
Q 013965 333 KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN 410 (433)
Q Consensus 333 ~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi 410 (433)
....++.....+++++|||+++++++.+++.|++. ++.+..+||+|++.+|++++++|++|+.+|||||+++++|||+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 23344455556789999999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred --cCeEEEEcCC-Ccccccc
Q 013965 411 --CACVIIVLCT-FVLYLTL 427 (433)
Q Consensus 411 --~~~Vi~~d~p-~~~~~~l 427 (433)
+++||+++.+ .++..+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~ 900 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLH 900 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHH
T ss_pred cCCcEEEEeCCCCCCHHHHH
Confidence 8899988874 4544443
No 53
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=282.07 Aligned_cols=204 Identities=38% Similarity=0.584 Sum_probs=181.6
Q ss_pred CCCcCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEE
Q 013965 99 KSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVL 176 (433)
Q Consensus 99 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~l 176 (433)
.+|++++ +++.+++.+.++||..|+++|.++++.++.+++++++||||+|||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566665 9999999999999999999999999999999999999999999999999999998876432 122377899
Q ss_pred EEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC-cccccceeEeeccc
Q 013965 177 VLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN-TNLRRVTYLVLDEA 255 (433)
Q Consensus 177 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~~~~lVvDEa 255 (433)
|++||++|+.|+++.+++++...+..+..++|+.....+...+..+++|+|+||++|.+++.... ..+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888899999999998888888888889999999999999887653 56889999999999
Q ss_pred hhhhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCe
Q 013965 256 DRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 303 (433)
Q Consensus 256 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~ 303 (433)
|++++++|...+..++..+++.+|+++||||++++++.+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999887654
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.9e-38 Score=325.06 Aligned_cols=294 Identities=19% Similarity=0.224 Sum_probs=217.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhHhcC------CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g------~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
+.+.+.+...+| +||++|.++++.++++ .+++++||||||||++|++|++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344455567899 9999999999998875 589999999999999999999988765 6789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccChHhH---HHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 182 RELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV---RDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 182 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
++||.|+++.+.++....++++..++|+....... ..+.. .++|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 99999999999999888889999999998765433 33334 49999999987744 35578899999999998
Q ss_pred hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKL 337 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 337 (433)
+.. ..+..+.......++++||||+++....+. +..+.....+.... .....+...+. ...+...+.+.
T Consensus 502 ~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~~~~~---~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGV-----KQREALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQTMLV---PMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCEECCC---CSSTHHHHHHH
T ss_pred hhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceEEEEe---ccchHHHHHHH
Confidence 532 122233334467899999999876554433 23332212222111 11112222221 22233445555
Q ss_pred HHh-hcCCCeEEEEeCCcc--------cHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccc
Q 013965 338 LED-IMDGSRILIFMDTKK--------GCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAA 405 (433)
Q Consensus 338 l~~-~~~~~~~lVF~~s~~--------~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~ 405 (433)
+.. ...+.+++|||++.+ .++.+++.|.. .++.+..+||+|++.+|+.++++|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 543 445678999999764 47888888887 478899999999999999999999999999999999999
Q ss_pred cCCCc--cCeEEEEcCCC-ccccc
Q 013965 406 RGLGN--CACVIIVLCTF-VLYLT 426 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~p~-~~~~~ 426 (433)
+|+|+ +++||++|.|. ++..+
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l 674 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQL 674 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHH
Confidence 99999 99999999996 44433
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.8e-37 Score=310.82 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=221.2
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+|+|+|.++++.+++++++++++|||+|||++|+++++..+... +.++|||+||++|+.|+.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999999999999999988777542 4489999999999999999999987766
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~ 279 (433)
+.++..++++.....+ +...++|+|+||+.|... ....+.++++||+||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7788888888766544 456799999999976432 234578899999999999765 567788888888899
Q ss_pred EEEEEeccchHHHHHHH-HhcCCCeEEEeCCCCc-----ccccceeeee---------------------eccChhHHHH
Q 013965 280 TLYWSATWPKEVEHLAR-QYLYNPYKVIIGSPDL-----KANHAIRQHV---------------------DIVSESQKYN 332 (433)
Q Consensus 280 ~l~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~---------------------~~~~~~~k~~ 332 (433)
+++||||++........ ..+..+........+. .....+.... .......+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999765432211 1112222211111100 0000000000 1112233445
Q ss_pred HHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc-cccccCCC
Q 013965 333 KLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLG 409 (433)
Q Consensus 333 ~l~~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gld 409 (433)
.+.+++.... .+.++||||+ .++++.+++.|...+..+..+||++++.+|+++++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 5666665542 2345666666 899999999999988899999999999999999999999999999999 99999999
Q ss_pred c--cCeEEEEcCCCcccccccC
Q 013965 410 N--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 410 i--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+ +++||+++.|.++..|++.
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~ 435 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQT 435 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHH
T ss_pred cccCcEEEEeCCCCCHHHHHHH
Confidence 9 9999999999998877643
No 56
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-37 Score=271.55 Aligned_cols=207 Identities=28% Similarity=0.524 Sum_probs=182.4
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 95 PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 95 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
+....+|+++++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999886532 22568
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCC-CceEEEEECCccChHhHHHhhc-CCcEEEeChHHHHHHHHcCCcccccceeEee
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASS-KIKSTCIYGGVPKGPQVRDLQK-GVEIVIATPGRLIDMLESHNTNLRRVTYLVL 252 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVv 252 (433)
+||++||++|+.|++++++++.... ++++..++|+.....+...+.. .++|+|+||+++.+++......+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999999988765 7889999998877666666554 4799999999999999888778899999999
Q ss_pred ccchhhhc-CCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEE
Q 013965 253 DEADRMLD-MGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVI 306 (433)
Q Consensus 253 DEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 306 (433)
||||++++ .+|...+..++..++++.|++++|||++++++++++.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 4788899999999988999999999999999999999999998764
No 57
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8.9e-38 Score=315.94 Aligned_cols=282 Identities=17% Similarity=0.114 Sum_probs=207.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH
Q 013965 104 VGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE 183 (433)
Q Consensus 104 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~ 183 (433)
+++++.+.+.+... ...++|+|+++++.++++++++++||||||||++|++|++..+... ++++||++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 44555555544432 4778999998999999999999999999999999999999888753 678999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 184 LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 184 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
||.|+.+.+.. ..+. +.+.... .....+..+.++|.+.+...+... ..+.++++||+||||++ +.+|
T Consensus 227 La~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 99999988863 2222 1111100 011234567788888888766654 45889999999999997 6667
Q ss_pred HHHHHHHHHhcC-CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhc
Q 013965 264 EPQIKKILSQIR-PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIM 342 (433)
Q Consensus 264 ~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 342 (433)
...+..++..++ +++|+++||||++..+..++. .++..+.+.... . ..+...++..+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~--------------~~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-P--------------ERSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-C--------------SSCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-C--------------HHHHHHHHHHHHh--
Confidence 878888877764 789999999999876543222 122222221110 0 0001122233333
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeE-------
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACV------- 414 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~V------- 414 (433)
..+++||||+++++|+.+++.|++.++.+..+||+ +|.+++++|++|+.+|||||+++++|||+ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~ 429 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCL 429 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCEEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccCceEEEECccee
Confidence 35689999999999999999999999999999985 78889999999999999999999999999 8887
Q ss_pred -------------EEEcCCCcccccccCC
Q 013965 415 -------------IIVLCTFVLYLTLGPL 430 (433)
Q Consensus 415 -------------i~~d~p~~~~~~l~~~ 430 (433)
|++|+|.+...|+.+.
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~ 458 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRR 458 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred cceecccCCCceEEcccccCCHHHHHHhc
Confidence 7888899888887654
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9e-36 Score=308.59 Aligned_cols=304 Identities=15% Similarity=0.179 Sum_probs=219.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHhc-CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCE
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPI 174 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~-g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 174 (433)
.++.+|+++++++.+.+.+...+ ..|++.|+++|+.++. +++++++||||||||+ ++|++...... ..+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCce
Confidence 35678999999999999999887 7899999999988775 5789999999999999 56665332211 1112668
Q ss_pred EEEEecCHHHHHHHHHHHHHhc-cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeec
Q 013965 175 VLVLAPTRELAVQIQQESTKFG-ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLD 253 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvD 253 (433)
++|++|+++|+.|+++.+.... ...+..+..-..... ......+|+++|||++.+.+... ..+.++++||+|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999998776543 222222221111100 11246899999999999887764 448899999999
Q ss_pred cchh-hhcCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHH
Q 013965 254 EADR-MLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYN 332 (433)
Q Consensus 254 Eah~-~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 332 (433)
|+|. .++.++...+.+.+....++.|++++|||++. +.+.. ++.+...+.+.... ..+.+.+......+...
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT----YPVELYYTPEFQRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC----CCEEEECCSSCCSCHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc----cceEEEEecCCchhHHH
Confidence 9994 66654333333333344578999999999964 34444 44443333332221 23444443333333333
Q ss_pred HHHHHHHh---hcCCCeEEEEeCCcccHHHHHHHHHh-----------CCCceEEEcCCCCHHHHHHHHHHHh-----cC
Q 013965 333 KLVKLLED---IMDGSRILIFMDTKKGCDQITRQLRM-----------DGWPALSIHGDKSQAERDWVLSEFK-----AG 393 (433)
Q Consensus 333 ~l~~~l~~---~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~lh~~~~~~~r~~~~~~f~-----~g 393 (433)
..+..+.. ....+++||||+++++++.+++.|.+ .++.+..+||+|++++|.++++.|+ +|
T Consensus 289 ~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 289 SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 33332222 12467999999999999999999975 5788999999999999999999999 99
Q ss_pred CCCEEEEccccccCCCc--cCeEEEEcC
Q 013965 394 KSPIMTATDVAARGLGN--CACVIIVLC 419 (433)
Q Consensus 394 ~~~iLvaT~~~~~Gldi--~~~Vi~~d~ 419 (433)
..+|||||+++++|||+ +++||++++
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSE
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCC
Confidence 99999999999999999 999999877
No 59
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-36 Score=301.13 Aligned_cols=272 Identities=18% Similarity=0.152 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
..|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.||.+++.++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 37899999999999999999999999999999999887754 457999999999999999999995
Q ss_pred Cce-EEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 200 ~~~-~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
+++ +..+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 477 7777776542 4799999999987765431 2458999999999998877654 34444 568
Q ss_pred cEEEEEeccch-------------------HHHHHHHHhcCCCeEEE--eCCCCc-----------------------cc
Q 013965 279 QTLYWSATWPK-------------------EVEHLARQYLYNPYKVI--IGSPDL-----------------------KA 314 (433)
Q Consensus 279 ~~l~~SAT~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~~-----------------------~~ 314 (433)
+++++|||+.. ...++...++..+.... +..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999862 22333222333222111 110000 00
Q ss_pred ccceeeee---------------------eccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEE
Q 013965 315 NHAIRQHV---------------------DIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (433)
Q Consensus 315 ~~~~~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 373 (433)
...+.+.+ .......|...+.+++.. ..+.++||||++++.++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000 012344677888888877 456799999999999999999884 667
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 374 lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+||+++..+|.+++++|++|+.+|||||+++++|+|+ +++||++|.|.+...|+++
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~ 431 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQR 431 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999998887654
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.1e-37 Score=301.47 Aligned_cols=268 Identities=17% Similarity=0.101 Sum_probs=196.4
Q ss_pred CCCCCcHHHHHHHHhHhcCCcE-EEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 118 GFFEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~g~~~-lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++.++... ++++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcC--
Confidence 6788999985 79999998877 8899999999999999999877653 67899999999999999998853
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHH-hcC
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILS-QIR 275 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~-~~~ 275 (433)
+.+......... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+.. ...
T Consensus 71 ----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 222211111100 12335679999999998887664 45889999999999976 3333333333322 235
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcc
Q 013965 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKK 355 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~ 355 (433)
++.|+++||||++.....+ +..++..+..... .+. ..+. .+.+.+.. ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~---~p~---~~~~---------~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE---IPE---RSWN---------TGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC---CCS---SCCS---------SSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCcc---CCc---hhhH---------HHHHHHHh--CCCCEEEEcCCHH
Confidence 6899999999998754322 2223332222210 000 0000 01222333 3568999999999
Q ss_pred cHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEEEc----------------
Q 013965 356 GCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVIIVL---------------- 418 (433)
Q Consensus 356 ~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~~d---------------- 418 (433)
+|+.+++.|+..++.+..+|+++. .++++.|++|+.+|||||+++++|||+ .++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~~~VI~~~~~~~~~~d~~~~~~l~ 275 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVI 275 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCCSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCCCEEEECCCcccccccccccceee
Confidence 999999999999999999999764 579999999999999999999999999 89999988
Q ss_pred ----CCCcccccccCC
Q 013965 419 ----CTFVLYLTLGPL 430 (433)
Q Consensus 419 ----~p~~~~~~l~~~ 430 (433)
.|.+...|+.+.
T Consensus 276 ~~~~~p~s~~~y~Qr~ 291 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRR 291 (451)
T ss_dssp EEEEEECCHHHHHHHH
T ss_pred ecccccCCHHHHHHhc
Confidence 888888776543
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.4e-35 Score=297.37 Aligned_cols=256 Identities=19% Similarity=0.151 Sum_probs=190.5
Q ss_pred CcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCc
Q 013965 122 PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKI 201 (433)
Q Consensus 122 ~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 201 (433)
+.++|.++++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+... .
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~g---~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHG---I 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHHS---C
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHhC---C
Confidence 345666666666688999999999999999999988762 55899999999999999998876542 3
Q ss_pred eEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCc--
Q 013965 202 KSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ-- 279 (433)
Q Consensus 202 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~-- 279 (433)
.+...+|+.. +..+++|+|+||++| +......+.++++|||||||+ ++.+|...+..++..++...+
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSE
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCce
Confidence 4555666543 346789999999997 455566788899999999974 566788889999998887766
Q ss_pred EEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHH
Q 013965 280 TLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQ 359 (433)
Q Consensus 280 ~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~ 359 (433)
++++|||++..+. ...+....+... ....+. ....... + .....+++||||+++++++.
T Consensus 353 lil~SAT~~~~i~------~~~p~i~~v~~~---~~~~i~----~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 353 VVLATATPPGSVT------VPHPNIEEVALS---NTGEIP----FYGKAIP-------I-EAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEEESSCTTCCC------CCCTTEEEEECB---SCSSEE----ETTEEEC-------G-GGSSSSEEEEECSCHHHHHH
T ss_pred EEEECCCCCcccc------cCCcceEEEeec---ccchhH----HHHhhhh-------h-hhccCCcEEEEeCCHHHHHH
Confidence 7788999987321 111111111000 000010 0000000 1 12256799999999999999
Q ss_pred HHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEE----------EEc----------
Q 013965 360 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVI----------IVL---------- 418 (433)
Q Consensus 360 l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi----------~~d---------- 418 (433)
+++.|++.++.+..+||+|++++ |.++..+|||||+++++|||+ +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccc
Confidence 99999999999999999999875 456777999999999999999 99888 677
Q ss_pred -CCCcccccccCC
Q 013965 419 -CTFVLYLTLGPL 430 (433)
Q Consensus 419 -~p~~~~~~l~~~ 430 (433)
+|.+...|+.+.
T Consensus 485 ~~P~s~~syiQRi 497 (666)
T 3o8b_A 485 TVPQDAVSRSQRR 497 (666)
T ss_dssp EEECBHHHHHHHH
T ss_pred cCcCCHHHHHHHh
Confidence 888888887654
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.4e-36 Score=303.31 Aligned_cols=273 Identities=18% Similarity=0.193 Sum_probs=189.7
Q ss_pred HHHCCCC-----CCcHHHH-----HHHHhHh------cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEE
Q 013965 114 ISKAGFF-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLV 177 (433)
Q Consensus 114 l~~~g~~-----~~~~~Q~-----~~i~~~l------~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~li 177 (433)
+..+||. .|+++|+ ++||.++ ++++++++||||||||++|++|++..+... ++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3445666 8999999 9999988 899999999999999999999999887653 678999
Q ss_pred EecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh
Q 013965 178 LAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR 257 (433)
Q Consensus 178 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~ 257 (433)
++||++||.|+++.+..+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||||+
T Consensus 276 laPTr~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 9999999999999887652 21 1000000 000112234455556665555543 5688999999999999
Q ss_pred hhcCCcHHHHHHHHHhc-CCCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHH
Q 013965 258 MLDMGFEPQIKKILSQI-RPDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVK 336 (433)
Q Consensus 258 ~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 336 (433)
+ +..+...+..+.... +.+.|+++||||++..+..+... ..++...... .... ....++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~-~~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDR-AWSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSS-CCSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee---------------cCHH-HHHHHHH
Confidence 7 222222333333333 36899999999998664322211 1121111110 0000 0111222
Q ss_pred HHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEE
Q 013965 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVI 415 (433)
Q Consensus 337 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi 415 (433)
.+.. .++++||||+++++++.+++.|+..++.+..+||+ +|++++++|++|+.+|||||+++++|||+ +++||
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDipv~~VI 478 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVI 478 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeCCcEEE
Confidence 2322 46789999999999999999999999999999994 79999999999999999999999999999 99999
Q ss_pred E--------------------EcCCCcccccccCC
Q 013965 416 I--------------------VLCTFVLYLTLGPL 430 (433)
Q Consensus 416 ~--------------------~d~p~~~~~~l~~~ 430 (433)
+ +|+|.+...|+.+.
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHh
Confidence 8 56888877776543
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-34 Score=291.57 Aligned_cols=293 Identities=17% Similarity=0.171 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHhHhc----C-CcEEEEccCCCchhHHHHHHHHHHHhcCCCC--CCCCCCEEEEEecCHHHHHHHH-HHH
Q 013965 121 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLAYLLPAIVHVNAQPFL--APGDGPIVLVLAPTRELAVQIQ-QES 192 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~----g-~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~~lil~Ptr~L~~q~~-~~~ 192 (433)
.|+|+|.++++.++. + +++++++|||+|||++++. ++..+....+. ....++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 4 6699999999999999554 44444432211 1124788999999999999999 777
Q ss_pred HHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHc----CCcccccceeEeeccchhhhcCCcHHHHH
Q 013965 193 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES----HNTNLRRVTYLVLDEADRMLDMGFEPQIK 268 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~----~~~~l~~~~~lVvDEah~~~~~~~~~~~~ 268 (433)
+.++. .+..+.++ ....+.+|+|+||++|...... ..+....+++||+||||++...+ ...++
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 77653 23333322 2235689999999999887642 22345678999999999987542 24566
Q ss_pred HHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCeEE-----------------E-eCCCCcc----c--------ccce
Q 013965 269 KILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPYKV-----------------I-IGSPDLK----A--------NHAI 318 (433)
Q Consensus 269 ~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~----~--------~~~~ 318 (433)
.++..++ ..++++||||+..........++..+... . +...... . ...+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777764 57899999998744333233333332211 1 1000000 0 0000
Q ss_pred eeeeeccCh-------hHHHH----HHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCC--------ceEEEcCCCC
Q 013965 319 RQHVDIVSE-------SQKYN----KLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW--------PALSIHGDKS 379 (433)
Q Consensus 319 ~~~~~~~~~-------~~k~~----~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------~~~~lh~~~~ 379 (433)
......... ..+.. .+.+++......+++||||+++++|+.+++.|.+.+. .+..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000000000 11122 2334444444567999999999999999999976532 3778999976
Q ss_pred HHHHHHHHHHHhcCCCC---EEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 380 QAERDWVLSEFKAGKSP---IMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 380 ~~~r~~~~~~f~~g~~~---iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
. +|.+++++|++|+.+ |||||+++++|+|+ +++||+++.|.+...|+..
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~ 536 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQI 536 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHH
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHH
Confidence 4 799999999998866 89999999999999 9999999999999987644
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.6e-36 Score=296.59 Aligned_cols=246 Identities=16% Similarity=0.142 Sum_probs=167.1
Q ss_pred hHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCcc
Q 013965 132 MALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVP 211 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 211 (433)
++++|+++++++|||||||++|++|++..+... ++++||++||++||.|+++.+..+. + .. ..+.-
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~-~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGLD----V--KF-HTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC----E--EE-ESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcCC----e--EE-ecccc
Confidence 467899999999999999999999999887653 6789999999999999999887542 2 21 11110
Q ss_pred ChHhHHHhhcCCcEEEeChHHHH---------HHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhc-CCCCcEE
Q 013965 212 KGPQVRDLQKGVEIVIATPGRLI---------DMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQI-RPDRQTL 281 (433)
Q Consensus 212 ~~~~~~~~~~~~~Iiv~Tp~~l~---------~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~-~~~~~~l 281 (433)
-.++||+++. ..+.. ...+.++++||+||||++ +.++...+..+.... +++.|++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 0256665443 22222 344789999999999997 333333333322222 4679999
Q ss_pred EEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 013965 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (433)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~ 361 (433)
+||||+++.+..++.. ..+...... . ..... ...++..+.. .++++||||++++.|+.++
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~~------------~---~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQT------------D---IPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEEC------------C---CCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEeCCCCchhhhhhhc--CCCeeEeee------------c---cChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 9999998764433221 111111110 0 00000 0111222322 3578999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE-------------------EcCCC
Q 013965 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII-------------------VLCTF 421 (433)
Q Consensus 362 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~-------------------~d~p~ 421 (433)
+.|+..++.+..+|| ++|.+++++|++|+.+|||||+++++|||+ +++||+ ++.|.
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccCceEEEeCCccceeeecccccceeecccccc
Confidence 999999999999999 468899999999999999999999999999 888886 89999
Q ss_pred cccccccCC
Q 013965 422 VLYLTLGPL 430 (433)
Q Consensus 422 ~~~~~l~~~ 430 (433)
+...|+.+.
T Consensus 271 ~~~~~~Qr~ 279 (440)
T 1yks_A 271 SASSAAQRR 279 (440)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHhc
Confidence 988887554
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.3e-34 Score=277.70 Aligned_cols=252 Identities=15% Similarity=0.104 Sum_probs=178.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
+|+++++++|||||||++|++|++..+... ++++||++||++|+.|+++.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 378999999999999999999999766543 6789999999999999998775 2444443333111
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh-cCCCCcEEEEEeccchHHHH
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQTLYWSATWPKEVEH 293 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~ 293 (433)
.-..+.-+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+... .+++.|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1123456778899988776666 556889999999999996 33233333333333 25789999999999874322
Q ss_pred HHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEE
Q 013965 294 LARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALS 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 373 (433)
+... ..+....... + ...+...+.+.+.. ..+++||||+++++++.+++.|++.++.+..
T Consensus 141 ~~~~--~~~i~~~~~~------------~----~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIIDEETR------------I----PDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEEEECC------------C----CSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceeecccc------------C----CHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1110 1111111000 0 00111122333433 3568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCe-----------------EEEEcCCCcccccccCC
Q 013965 374 IHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CAC-----------------VIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 374 lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~-----------------Vi~~d~p~~~~~~l~~~ 430 (433)
+||+ +|++++++|++|+.+|||||+++++|+|+ +.+ ||+++.|.++..|..+.
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHH
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhh
Confidence 9997 57889999999999999999999999999 555 67888999888876543
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.3e-34 Score=283.11 Aligned_cols=256 Identities=17% Similarity=0.153 Sum_probs=178.2
Q ss_pred HHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEE
Q 013965 127 AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCI 206 (433)
Q Consensus 127 ~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~ 206 (433)
.+....+.+++++++++|||||||++|++|++..+... ++++||++||++|+.|+++.+.. +.+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~ 78 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRG------LPVRYQ 78 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTT------SCEEEC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcC------ceEeEE
Confidence 33344566789999999999999999999999887653 67899999999999999998873 222211
Q ss_pred ECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchh-----hhcCCcHHHHHHHHHhcCCCCcEE
Q 013965 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADR-----MLDMGFEPQIKKILSQIRPDRQTL 281 (433)
Q Consensus 207 ~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~-----~~~~~~~~~~~~i~~~~~~~~~~l 281 (433)
.+.... .-..+.-+.++|.+.+...+... ..+.++++||+||||+ ++..+|..... ..++.|++
T Consensus 79 ~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred eccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 111100 01234567888999888776654 4588999999999998 44444433222 23689999
Q ss_pred EEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHH
Q 013965 282 YWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT 361 (433)
Q Consensus 282 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~ 361 (433)
+||||++..+..+... ..|+........ .. +...+...+.. ..+++||||++++.|+.++
T Consensus 148 l~SAT~~~~~~~~~~~--~~pi~~~~~~~~---~~-------------~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~ 207 (459)
T 2z83_A 148 FMTATPPGTTDPFPDS--NAPIHDLQDEIP---DR-------------AWSSGYEWITE--YAGKTVWFVASVKMGNEIA 207 (459)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECCCC---SS-------------CCSSCCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEEcCCCcchhhhccC--CCCeEEecccCC---cc-------------hhHHHHHHHHh--cCCCEEEEeCChHHHHHHH
Confidence 9999998764332211 223322111100 00 00011222333 2578999999999999999
Q ss_pred HHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc-cCeEEE--------------------EcCC
Q 013965 362 RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN-CACVII--------------------VLCT 420 (433)
Q Consensus 362 ~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi-~~~Vi~--------------------~d~p 420 (433)
+.|+..++.+..+|++ +|.++++.|++|+.+|||||+++++|||+ .++||+ ||.|
T Consensus 208 ~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 208 MCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCCCEEEECCcccccccccccccccccccCCC
Confidence 9999999999999995 68889999999999999999999999999 888888 6789
Q ss_pred CcccccccCC
Q 013965 421 FVLYLTLGPL 430 (433)
Q Consensus 421 ~~~~~~l~~~ 430 (433)
.+...|+.+.
T Consensus 284 ~s~~~~~QR~ 293 (459)
T 2z83_A 284 ITSASAAQRR 293 (459)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHhc
Confidence 8888776543
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=2.8e-31 Score=269.33 Aligned_cols=245 Identities=18% Similarity=0.085 Sum_probs=181.9
Q ss_pred HhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCc
Q 013965 131 PMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (433)
Q Consensus 131 ~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 210 (433)
...+++++++++||||||||+. ++..+.. ....+|++|||+||.|+++.+.+. ++++..++|+.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 3456789999999999999983 3333333 223599999999999999999886 47788888876
Q ss_pred cChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcC-CCCcEEEEEeccch
Q 013965 211 PKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIR-PDRQTLYWSATWPK 289 (433)
Q Consensus 211 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~ 289 (433)
..-. ..-....+++++|++.+. ....+++||+||||++.+.+|+..+..++..++ ...+++++|||. +
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~ 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-D 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-H
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-H
Confidence 5310 000113678888874432 246789999999999999999999999998887 788999999996 3
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCC
Q 013965 290 EVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 369 (433)
.+..++... .....+..... . .......... ..+... ....+|||+++++++.+++.|.+.++
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r--~--~~l~~~~~~l----------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKR--L--TPISVLDHAL----------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCC--S--SCEEECSSCC----------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CCceEEEEeee--c--chHHHHHHHH----------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 455555443 33333322111 1 1111100000 011111 23458999999999999999999999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhc--CCCCEEEEccccccCCCc-cCeEEEEcC
Q 013965 370 PALSIHGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLGN-CACVIIVLC 419 (433)
Q Consensus 370 ~~~~lh~~~~~~~r~~~~~~f~~--g~~~iLvaT~~~~~Gldi-~~~Vi~~d~ 419 (433)
.+..+||+|++++|.++++.|++ |+.+|||||+++++|||+ +++||++++
T Consensus 346 ~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~ 398 (677)
T 3rc3_A 346 ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSL 398 (677)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCS
T ss_pred CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCc
Confidence 99999999999999999999999 889999999999999999 999999999
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.7e-30 Score=259.60 Aligned_cols=288 Identities=18% Similarity=0.223 Sum_probs=198.4
Q ss_pred CCcHHHHHHHHhHh----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+|+|.++++++. .++++++.++||+|||++++. ++..+... +...++|||||+ +|+.||.+++.++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKFA 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHHC
Confidence 68999999998774 578999999999999998554 44444432 124579999995 69999999999987
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCC
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRP 276 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~ 276 (433)
.. +++..+.|+... ......+|+|+||+++..... .....+++||+||||++.+.. ....+.+..+ +
T Consensus 110 ~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l-~ 176 (500)
T 1z63_A 110 PH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL-K 176 (500)
T ss_dssp TT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-C
T ss_pred CC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-c
Confidence 54 556666555422 123458999999999865433 223468999999999987654 2344455555 3
Q ss_pred CCcEEEEEeccchH-HHHH------------------------------------HHHhcCCCeEEEeCCCC----cccc
Q 013965 277 DRQTLYWSATWPKE-VEHL------------------------------------ARQYLYNPYKVIIGSPD----LKAN 315 (433)
Q Consensus 277 ~~~~l~~SAT~~~~-~~~~------------------------------------~~~~~~~~~~~~~~~~~----~~~~ 315 (433)
..+.+++|||+..+ ..++ ....+. +..+.....+ ...+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCC
Confidence 56789999998331 1111 111111 1111110000 0000
Q ss_pred cceeeeee--------------------------------------------------------ccChhHHHHHHHHHHH
Q 013965 316 HAIRQHVD--------------------------------------------------------IVSESQKYNKLVKLLE 339 (433)
Q Consensus 316 ~~~~~~~~--------------------------------------------------------~~~~~~k~~~l~~~l~ 339 (433)
......+. ......|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 00000000 0122456667777776
Q ss_pred hh-cCCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEEccccccCCCc--cCe
Q 013965 340 DI-MDGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTATDVAARGLGN--CAC 413 (433)
Q Consensus 340 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~-iLvaT~~~~~Gldi--~~~ 413 (433)
.. ..+.++||||+++..++.++..|... ++.+..+||++++.+|.+++++|+++ ..+ +|++|+++++|+|+ +++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 64 35679999999999999999999875 89999999999999999999999998 455 89999999999999 999
Q ss_pred EEEEcCCCcccccccC
Q 013965 414 VIIVLCTFVLYLTLGP 429 (433)
Q Consensus 414 Vi~~d~p~~~~~~l~~ 429 (433)
||++|+|++...|..+
T Consensus 416 vi~~d~~~~~~~~~Q~ 431 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQA 431 (500)
T ss_dssp EEESSCCSCC---CHH
T ss_pred EEEeCCCCCcchHHHH
Confidence 9999999998887654
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=5.6e-31 Score=279.77 Aligned_cols=298 Identities=15% Similarity=0.072 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHhHhc--CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 120 FEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.+|+|+|.+++..++. +.+++++++||+|||++++..+...+... ...++|||||+ +|+.||..++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 4689999999998886 45899999999999999877666555432 13479999999 99999999997754
Q ss_pred CCCceEEEEECCccChHhHH---HhhcCCcEEEeChHHHHHHHHc-CCcccccceeEeeccchhhhcCCcH--HHHHHHH
Q 013965 198 SSKIKSTCIYGGVPKGPQVR---DLQKGVEIVIATPGRLIDMLES-HNTNLRRVTYLVLDEADRMLDMGFE--PQIKKIL 271 (433)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~~~~lVvDEah~~~~~~~~--~~~~~i~ 271 (433)
++++..+.++... .... ......+|+|+|++.+...... ..+...++++||+||||++...... ..+..+.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 3555544433211 1111 1123579999999887532111 0122456899999999998654421 1122222
Q ss_pred HhcCCCCcEEEEEeccch----HHHHHHH----------------------------HhcCC------------------
Q 013965 272 SQIRPDRQTLYWSATWPK----EVEHLAR----------------------------QYLYN------------------ 301 (433)
Q Consensus 272 ~~~~~~~~~l~~SAT~~~----~~~~~~~----------------------------~~~~~------------------ 301 (433)
.......+++++|||+.. +...+.. .+...
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 222345679999999732 0000000 00000
Q ss_pred ----------------------------------CeEEEeCCCCcccc--cceee-------------------------
Q 013965 302 ----------------------------------PYKVIIGSPDLKAN--HAIRQ------------------------- 320 (433)
Q Consensus 302 ----------------------------------~~~~~~~~~~~~~~--~~~~~------------------------- 320 (433)
...+.......... .....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000000000 00000
Q ss_pred --------------------eeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh-CCCceEEEcCCCC
Q 013965 321 --------------------HVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM-DGWPALSIHGDKS 379 (433)
Q Consensus 321 --------------------~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~lh~~~~ 379 (433)
.........|...|.+++.. ..+.++||||+++..++.++..|.. .|+++..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 00123345688888888877 4667999999999999999999994 6999999999999
Q ss_pred HHHHHHHHHHHhcCC--CCEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 380 QAERDWVLSEFKAGK--SPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 380 ~~~r~~~~~~f~~g~--~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+.+|+.++++|++|+ .+|||||+++++|+|+ +++||++|+|.+...|..+
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~ 593 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQR 593 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHH
Confidence 999999999999998 9999999999999999 9999999999998887654
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=3.8e-29 Score=263.85 Aligned_cols=297 Identities=13% Similarity=0.092 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHHhHhc--------------CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 120 FEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~--------------g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
..|||+|.+|++.++. +++++++++||||||+++ ++++..+... +...++|||+|+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 368999999999999996 6666544321 1246899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcCC--cccccceeEeeccchhhhcCC
Q 013965 186 VQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHN--TNLRRVTYLVLDEADRMLDMG 262 (433)
Q Consensus 186 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~--~~l~~~~~lVvDEah~~~~~~ 262 (433)
.|+.+++..+.... +.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 344 ~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-- 415 (1038)
T ss_dssp HHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--
T ss_pred HHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--
Confidence 99999999987531 234445555555553 468999999999999876532 2456789999999999764
Q ss_pred cHHHHHHHHHhcCCCCcEEEEEeccchHH--------H-------------HHHHHhcCCCeEEEeCCCCccc-------
Q 013965 263 FEPQIKKILSQIRPDRQTLYWSATWPKEV--------E-------------HLARQYLYNPYKVIIGSPDLKA------- 314 (433)
Q Consensus 263 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~------- 314 (433)
...+..+...+ ++.++++||||+.... . +.+..-...|..+.........
T Consensus 416 -~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 416 -GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp -HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred -hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 23455565666 4689999999986421 1 1111212223332221100000
Q ss_pred c----cceeeeeeccChhHHHHHHHHHH-Hhh---c-------CCCeEEEEeCCcccHHHHHHHHHhCC-----------
Q 013965 315 N----HAIRQHVDIVSESQKYNKLVKLL-EDI---M-------DGSRILIFMDTKKGCDQITRQLRMDG----------- 368 (433)
Q Consensus 315 ~----~~~~~~~~~~~~~~k~~~l~~~l-~~~---~-------~~~~~lVF~~s~~~~~~l~~~L~~~~----------- 368 (433)
. ..+.+. .......+...+.+.+ ... . .+.++||||++++.|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 494 DEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred cHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 0 000000 0112333444444322 321 1 23589999999999999999997643
Q ss_pred -CceE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCCE
Q 013965 369 -WPAL-SIHGD----------K----------SQ-----------------------------AERDWVLSEFKAGKSPI 397 (433)
Q Consensus 369 -~~~~-~lh~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~i 397 (433)
+.+. ++|++ + ++ .+|..++++|++|+++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 4554 45542 2 22 14788999999999999
Q ss_pred EEEccccccCCCc-cCeEEEEcCCCcccccccCCCCC
Q 013965 398 MTATDVAARGLGN-CACVIIVLCTFVLYLTLGPLSFT 433 (433)
Q Consensus 398 LvaT~~~~~Gldi-~~~Vi~~d~p~~~~~~l~~~~~~ 433 (433)
||+|+++.+|+|+ .-+|+++|.|.+...++.+.+++
T Consensus 653 LIvvd~lltGfDiP~l~tlylDkpl~~~~liQaIGRt 689 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRT 689 (1038)
T ss_dssp EEESSTTSSSCCCTTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEcchHHhCcCcccccEEEEccCCCccceeehhhcc
Confidence 9999999999999 33889999999988887776654
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=257.99 Aligned_cols=355 Identities=15% Similarity=0.222 Sum_probs=230.1
Q ss_pred CccccccccChhhccCCHHHHHHHHHhcCcee---ccCCCCCCCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHh
Q 013965 58 PFEKNFYVESPSVAAMSEREVEEYRQQREITV---EGRDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL 134 (433)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l 134 (433)
+++.+.|.....+.....+.+..+........ .....+.....|..+...+.... -.+|+|+|.+++.+++
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~Lr~yQ~egv~~l~ 249 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIK------GGELRDFQLTGINWMA 249 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTCC------SSCCCTHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCccC------CCCcCHHHHHHHHHHH
Confidence 34555665555566666777777766532211 11111222233444433222111 1378999999998776
Q ss_pred ----cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCc
Q 013965 135 ----KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGV 210 (433)
Q Consensus 135 ----~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 210 (433)
.++++|++.+||+|||++++..+...+.... ....+||||| .+|+.||.+++.++.+. +++.+++|+.
T Consensus 250 ~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~p~--~~v~~~~g~~ 321 (800)
T 3mwy_W 250 FLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWAPD--LNCICYMGNQ 321 (800)
T ss_dssp HHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHSTT--CCEEECCCSS
T ss_pred HHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHCCC--ceEEEEeCCH
Confidence 6889999999999999985554443332211 1345899999 68899999999998754 6666666655
Q ss_pred cChHhHHHh------------hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 211 PKGPQVRDL------------QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 211 ~~~~~~~~~------------~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
......... ....+|+|+|++.+...... +....+++|||||||++.... ....+.+..+ ...
T Consensus 322 ~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l-~~~ 396 (800)
T 3mwy_W 322 KSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSF-KVA 396 (800)
T ss_dssp HHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHh-hhc
Confidence 443333221 23578999999998754332 112358999999999985432 2444555555 345
Q ss_pred cEEEEEeccc----hHHHHHHHHhcCC-----------------------------CeEEEeCCCCcc--cccceeeeee
Q 013965 279 QTLYWSATWP----KEVEHLARQYLYN-----------------------------PYKVIIGSPDLK--ANHAIRQHVD 323 (433)
Q Consensus 279 ~~l~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~~~~~~~~ 323 (433)
..+++|||+- .++..++..+... |..+........ .+......+.
T Consensus 397 ~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~ 476 (800)
T 3mwy_W 397 NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILR 476 (800)
T ss_dssp EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEE
T ss_pred cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEE
Confidence 6788999972 1222222211111 000000000000 0000000000
Q ss_pred --------------------------------------------------------------------------ccChhH
Q 013965 324 --------------------------------------------------------------------------IVSESQ 329 (433)
Q Consensus 324 --------------------------------------------------------------------------~~~~~~ 329 (433)
......
T Consensus 477 v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 556 (800)
T 3mwy_W 477 VELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSG 556 (800)
T ss_dssp ECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcCh
Confidence 001245
Q ss_pred HHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC---CEEEEccccc
Q 013965 330 KYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS---PIMTATDVAA 405 (433)
Q Consensus 330 k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~---~iLvaT~~~~ 405 (433)
|...|.+++.... .+.++||||+....++.|+..|...|+.+..+||+++..+|..++++|+++.. .+|++|.+++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 6777777777654 45699999999999999999999999999999999999999999999998665 4999999999
Q ss_pred cCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 406 RGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 406 ~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
.|||+ +++||+||+|++...++++.-
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~g 664 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMA 664 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHT
T ss_pred CCCCccccceEEEecCCCChhhHHHHHH
Confidence 99999 999999999999988776543
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=9.3e-28 Score=245.40 Aligned_cols=302 Identities=16% Similarity=0.169 Sum_probs=202.1
Q ss_pred CCcHHHHHHHHhHh---------cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH
Q 013965 121 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l---------~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~ 191 (433)
.|+|+|.+++.++. .+..+|+..+||+|||++++..+...+...+. ......++|||+|+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 35679999999999999866655554443321 11123469999996 899999999
Q ss_pred HHHhccCCCceEEEEECCccChHh--HHHhh------cCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCc
Q 013965 192 STKFGASSKIKSTCIYGGVPKGPQ--VRDLQ------KGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGF 263 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~------~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~ 263 (433)
+.++... .+.+..++++...... ..... ...+|+|+|++.+..... .+....+++||+||||++....
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998755 4566666666432211 11111 147899999999875532 2334568999999999986543
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeccchHH-------------------HHH------------------------------
Q 013965 264 EPQIKKILSQIRPDRQTLYWSATWPKEV-------------------EHL------------------------------ 294 (433)
Q Consensus 264 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~-------------------~~~------------------------------ 294 (433)
....+.+..+ .....+++|||+-.+. ..+
T Consensus 209 -~~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2233344444 3567899999962210 000
Q ss_pred ----HHHh------------cCCCeEEEe--CCCCc------------------cccc----c-----------------
Q 013965 295 ----ARQY------------LYNPYKVII--GSPDL------------------KANH----A----------------- 317 (433)
Q Consensus 295 ----~~~~------------~~~~~~~~~--~~~~~------------------~~~~----~----------------- 317 (433)
...+ +.......+ ..... .... .
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000 000000000 00000 0000 0
Q ss_pred -----------------eee----eeeccChhHHHHHHHHHHHhhc--CCCeEEEEeCCcccHHHHHHHHHhCCCceEEE
Q 013965 318 -----------------IRQ----HVDIVSESQKYNKLVKLLEDIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSI 374 (433)
Q Consensus 318 -----------------~~~----~~~~~~~~~k~~~l~~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 374 (433)
... .........|...+..++.... .+.++||||++...++.++..|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 000 0000012345555555555432 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC---EEEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 375 HGDKSQAERDWVLSEFKAGKSP---IMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 375 h~~~~~~~r~~~~~~f~~g~~~---iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
||+++..+|.+++++|+++... +|++|+++++|||+ +++||+||+|++...+..+.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999999999999999998764 89999999999999 99999999999988776543
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=1.1e-26 Score=229.90 Aligned_cols=298 Identities=19% Similarity=0.192 Sum_probs=216.3
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+++|.-+.-.+..|+ |..+.||+|||+++.+|++...+. |..+.||+|++.||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 455 57899999988888887 899999999999999999866554 6679999999999999999999999
Q ss_pred cCCCceEEEEECCc------------------------------------------------cChHhHHHhhcCCcEEEe
Q 013965 197 ASSKIKSTCIYGGV------------------------------------------------PKGPQVRDLQKGVEIVIA 228 (433)
Q Consensus 197 ~~~~~~~~~~~g~~------------------------------------------------~~~~~~~~~~~~~~Iiv~ 228 (433)
..+++++.+++... ......+.-.-.|||+++
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 99999999998721 000111112224899999
Q ss_pred ChHHHH-HHHHcCC------cccccceeEeeccchhhh-cCC---------------c----------------------
Q 013965 229 TPGRLI-DMLESHN------TNLRRVTYLVLDEADRML-DMG---------------F---------------------- 263 (433)
Q Consensus 229 Tp~~l~-~~l~~~~------~~l~~~~~lVvDEah~~~-~~~---------------~---------------------- 263 (433)
|..-+- ++|..+. ...+.+.+.||||+|.++ |.. .
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 998873 5555431 224668999999999744 100 0
Q ss_pred -------HH---HHHHHH---------------------Hh---cC----------------------------------
Q 013965 264 -------EP---QIKKIL---------------------SQ---IR---------------------------------- 275 (433)
Q Consensus 264 -------~~---~~~~i~---------------------~~---~~---------------------------------- 275 (433)
.. .+++++ .. +.
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00 001100 00 00
Q ss_pred ---------------------------CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChh
Q 013965 276 ---------------------------PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSES 328 (433)
Q Consensus 276 ---------------------------~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (433)
--.++.+||+|+..+...+.+.|..+ .+.+.. .........+.+.+....
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESSHH
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEecHH
Confidence 01368899999988888877766543 222222 112122222334567888
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccC
Q 013965 329 QKYNKLVKLLEDI-MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARG 407 (433)
Q Consensus 329 ~k~~~l~~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~G 407 (433)
+|...+.+.+... ..+.++||||+|++.++.++..|.+.|+++.++||+..+.++..+.++|+.| .|+|||++++||
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 9999999988764 3567899999999999999999999999999999996656666566666665 599999999999
Q ss_pred CCcc----------CeEEEEcCCCcccccccCC
Q 013965 408 LGNC----------ACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 408 ldi~----------~~Vi~~d~p~~~~~~l~~~ 430 (433)
+||. .+||++++|.+...|..+.
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qri 568 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLR 568 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHH
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhh
Confidence 9992 3999999999998887443
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=3e-26 Score=230.66 Aligned_cols=130 Identities=23% Similarity=0.241 Sum_probs=113.9
Q ss_pred CCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 117 AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+ .|+++|..+++.+++|+ ++.++||+|||++|.+|++..... +..++|++||++||.|.++.+..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 788 99999999999999998 999999999999999999765543 5579999999999999999999999
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHH-HHHHHcCC------cccc---cceeEeeccchhhh
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRL-IDMLESHN------TNLR---RVTYLVLDEADRML 259 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~---~~~~lVvDEah~~~ 259 (433)
..+++++.+++|+.+. +.+....+++|+|+||++| .+++..+. ..++ .+.++|+||+|+|+
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999874 3344455799999999999 78887653 4567 89999999999876
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=204.77 Aligned_cols=166 Identities=23% Similarity=0.220 Sum_probs=122.7
Q ss_pred CCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHH-HHHHHHHhc
Q 013965 118 GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQ-IQQESTKFG 196 (433)
Q Consensus 118 g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q-~~~~~~~~~ 196 (433)
....|+++|.++++.+++++++++.+|||+|||++|+++++..+.... ....+.++||++|+++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK--KASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH--HTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc--cccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345799999999999999999999999999999999999987765421 11225689999999999999 778888876
Q ss_pred cCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCC------cccccceeEeeccchhhhcCCcHHHHH-H
Q 013965 197 ASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHN------TNLRRVTYLVLDEADRMLDMGFEPQIK-K 269 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~------~~l~~~~~lVvDEah~~~~~~~~~~~~-~ 269 (433)
.. ++++..+.|+.........+...++|+|+||++|..++.... ..+.++++||+||||++.+.++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 678888888876665555555679999999999999887743 557889999999999998776555443 3
Q ss_pred HHHhc-------------CCCCcEEEEEec
Q 013965 270 ILSQI-------------RPDRQTLYWSAT 286 (433)
Q Consensus 270 i~~~~-------------~~~~~~l~~SAT 286 (433)
++... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 22211 167899999998
No 76
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=193.67 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=131.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 110 VMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 110 l~~~l~~~g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
+.+.+.......++++|.++++.+..|++++++||||||||+++.++++....... ...++.+++++|+++|+.|+.
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---RAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---CGGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---CCCceEEEEeccchHHHHHHH
Confidence 33333333344578999999999999999999999999999999999888766532 123568999999999999999
Q ss_pred HHHHHhcc-CCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh-hcCCcHH-H
Q 013965 190 QESTKFGA-SSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM-LDMGFEP-Q 266 (433)
Q Consensus 190 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~-~~~~~~~-~ 266 (433)
+.+..... ..+..+..-..... .....+++|+|+||++|.+++.. .+.++++||+||||++ ++.+|.. .
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 88876433 33333332221110 11124588999999999999876 3788999999999985 7777774 5
Q ss_pred HHHHHHhcCCCCcEEEEEeccchHHHHHHHHhcCCCe
Q 013965 267 IKKILSQIRPDRQTLYWSATWPKEVEHLARQYLYNPY 303 (433)
Q Consensus 267 ~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~ 303 (433)
++.++.. .++.|+++||||++.+. +++.+...|.
T Consensus 199 l~~i~~~-~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 199 LRDVVQA-YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHH-CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHhh-CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 5555554 46899999999998776 5555555543
No 77
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.92 E-value=2e-25 Score=205.78 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=128.4
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.+|+++|.++++.++.+++.++++|||+|||+++++++...+... ..++||++||++|+.||.+++.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999888899999999999999988877766532 3489999999999999999999998776
Q ss_pred CceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCc
Q 013965 200 KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQ 279 (433)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~ 279 (433)
...+..++++..... ......+|+|+||+++... ....+.++++||+||||++.. ..+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 778888888875532 2235689999999887543 223467899999999999864 478888888888999
Q ss_pred EEEEEeccchHHH
Q 013965 280 TLYWSATWPKEVE 292 (433)
Q Consensus 280 ~l~~SAT~~~~~~ 292 (433)
++++|||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999976543
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=9.7e-23 Score=208.17 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=105.8
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 013965 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 354 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~ 354 (433)
...|++++|||++...... ........+...... .. .+.+.....+...++..+... ..+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~--~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL--DP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC--CC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC--CC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3678999999997643221 111111111111100 00 111222334555555555443 3567999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcC-----CCcccccc
Q 013965 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLC-----TFVLYLTL 427 (433)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~-----p~~~~~~l 427 (433)
+.++.+++.|...|+.+..+||++++.+|.+++++|++|+.+|||||+++++|+|+ +++||++|. |.+...|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 899999997 77776665
Q ss_pred cC
Q 013965 428 GP 429 (433)
Q Consensus 428 ~~ 429 (433)
.+
T Consensus 530 Qr 531 (664)
T 1c4o_A 530 QT 531 (664)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.4e-20 Score=189.13 Aligned_cols=281 Identities=17% Similarity=0.135 Sum_probs=183.3
Q ss_pred CCcHHHHHHHHh----HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~----~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+++|+|.+.+.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999997765 4468999999999999999999999972 6789999999999999999999987
Q ss_pred cCCCceEEEEECCccC---------------------------------hHhH------------------HHhhcCCcE
Q 013965 197 ASSKIKSTCIYGGVPK---------------------------------GPQV------------------RDLQKGVEI 225 (433)
Q Consensus 197 ~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~I 225 (433)
...++++..+.|..+. .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7777888887763211 0111 223357899
Q ss_pred EEeChHHHHHHHHcCCccc-ccceeEeeccchhhhcCC------------------------------------------
Q 013965 226 VIATPGRLIDMLESHNTNL-RRVTYLVLDEADRMLDMG------------------------------------------ 262 (433)
Q Consensus 226 iv~Tp~~l~~~l~~~~~~l-~~~~~lVvDEah~~~~~~------------------------------------------ 262 (433)
||+|+..|.+........+ ....++||||||.+.+ -
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987654433332 4678999999998765 1
Q ss_pred -------------cHHHHHHH----------------------------HH----------------------------h
Q 013965 263 -------------FEPQIKKI----------------------------LS----------------------------Q 273 (433)
Q Consensus 263 -------------~~~~~~~i----------------------------~~----------------------------~ 273 (433)
+...+..+ +. .
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 00 0
Q ss_pred cCCC-CcEEEEEeccchHHHHHHHHhcCC-CeEE-----EeCCCCcccccceeeeee-ccC------hhHHHHHHHHHHH
Q 013965 274 IRPD-RQTLYWSATWPKEVEHLARQYLYN-PYKV-----IIGSPDLKANHAIRQHVD-IVS------ESQKYNKLVKLLE 339 (433)
Q Consensus 274 ~~~~-~~~l~~SAT~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~-~~~------~~~k~~~l~~~l~ 339 (433)
+... ..+|++|||+.+ ...+.+.+..+ +... .+.+. ...+....+. ..+ +......+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~sp---f~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKR---VSGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSC---CSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCc---CCCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 0122 688999999976 44444443322 2221 01111 1111111111 011 1222344555444
Q ss_pred hhc--CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc--cccccCCCcc----
Q 013965 340 DIM--DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT--DVAARGLGNC---- 411 (433)
Q Consensus 340 ~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT--~~~~~Gldi~---- 411 (433)
... ..+.+|||++|....+.+++. .+.++..=..+++ +.++++.|+.....||+|| ..+++|||+.
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 322 346899999999999999872 3444433333445 4557778864445799998 6999999995
Q ss_pred ---CeEEEEcCCCcc
Q 013965 412 ---ACVIIVLCTFVL 423 (433)
Q Consensus 412 ---~~Vi~~d~p~~~ 423 (433)
.+||+..+|...
T Consensus 461 ~~l~~viI~~lPfp~ 475 (551)
T 3crv_A 461 SLISDVVIVGIPYPP 475 (551)
T ss_dssp ESEEEEEEESCCCCC
T ss_pred cceeEEEEEcCCCCC
Confidence 799999999753
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.4e-21 Score=195.67 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCCCCCcHHHHHHHHh----HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 117 AGFFEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~----~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
.|| +|+|+|.+++.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 356 789999998754 4578999999999999999999998764 568999999999999999998
Q ss_pred HHhccCCCceEEEEECCccC--------h---------------------------------------HhHHHhhcCCcE
Q 013965 193 TKFGASSKIKSTCIYGGVPK--------G---------------------------------------PQVRDLQKGVEI 225 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~g~~~~--------~---------------------------------------~~~~~~~~~~~I 225 (433)
.++. +++..+.|.... . ...+.....++|
T Consensus 72 ~~l~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLLG----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGGT----CCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred HhcC----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 8752 344333322100 0 000112346799
Q ss_pred EEeChHHHHHHHHcCCc-------ccccceeEeeccchhhh
Q 013965 226 VIATPGRLIDMLESHNT-------NLRRVTYLVLDEADRML 259 (433)
Q Consensus 226 iv~Tp~~l~~~l~~~~~-------~l~~~~~lVvDEah~~~ 259 (433)
||+|+..|.+....... .+....++||||||.+.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999864432211 24668999999999874
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=7.2e-22 Score=201.64 Aligned_cols=145 Identities=18% Similarity=0.151 Sum_probs=107.1
Q ss_pred CCCcEEEEEeccchHHHHHHHHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhh-cCCCeEEEEeCCc
Q 013965 276 PDRQTLYWSATWPKEVEHLARQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDI-MDGSRILIFMDTK 354 (433)
Q Consensus 276 ~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~lVF~~s~ 354 (433)
...|++++|||++...... ................+ .+.......+...++..+... ..+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999997654222 11222221111111111 111222334455565555544 3567999999999
Q ss_pred ccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcC-----CCcccccc
Q 013965 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLC-----TFVLYLTL 427 (433)
Q Consensus 355 ~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~-----p~~~~~~l 427 (433)
+.++.+++.|...|+.+..+||++++.+|.+++++|++|+.+|||||+++++|+|+ +++||++|. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 899999998 88777765
Q ss_pred cC
Q 013965 428 GP 429 (433)
Q Consensus 428 ~~ 429 (433)
.+
T Consensus 536 Qr 537 (661)
T 2d7d_A 536 QT 537 (661)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=8.8e-21 Score=169.61 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
..|+++|.++++.+++++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+++.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47899999999999999999999999999999987776542 456999999999999999999984
Q ss_pred Cce-EEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 200 KIK-STCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 200 ~~~-~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
+++ +..+.|+.. ...+|+|+|++.+....... ..++++||+||||++.+..+. .++..+ +..
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC-CCS
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc-cCC
Confidence 466 677766553 25799999999987665431 245899999999998776543 344444 467
Q ss_pred cEEEEEeccchH
Q 013965 279 QTLYWSATWPKE 290 (433)
Q Consensus 279 ~~l~~SAT~~~~ 290 (433)
+++++|||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998753
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.81 E-value=1.2e-18 Score=176.32 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHh----HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 120 FEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 120 ~~~~~~Q~~~i~~----~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.+|+|.|.+.+.. +.+|+++++.||||+|||++|++|++.++... +.+++|++||++|+.|+.+++.++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 3689999999864 45699999999999999999999999987652 678999999999999999999988
Q ss_pred ccCCCceEEEEECC
Q 013965 196 GASSKIKSTCIYGG 209 (433)
Q Consensus 196 ~~~~~~~~~~~~g~ 209 (433)
....++++..+.|+
T Consensus 75 ~~~~~~~~~~l~gr 88 (620)
T 4a15_A 75 SSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHSCCCEEECCCH
T ss_pred hhccCeEEEEEECC
Confidence 76556777666553
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=157.16 Aligned_cols=133 Identities=28% Similarity=0.334 Sum_probs=105.7
Q ss_pred HHhcCCCeEEEeCCCCcccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEc
Q 013965 296 RQYLYNPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIH 375 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh 375 (433)
..|+.+|..+.++... ....++.+.+..+...+|...|.+++... .+++||||++++.++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3567788888776655 55678888888899999999999998763 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 376 GDKSQAERDWVLSEFKAGKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 376 ~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
|+|++.+|.++++.|++|+.+|||||+++++|+|+ +++||+||+|.+...|+.+.-
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~G 143 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIG 143 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999 999999999999888876543
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=8.9e-19 Score=147.37 Aligned_cols=118 Identities=31% Similarity=0.333 Sum_probs=108.5
Q ss_pred cccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 013965 314 ANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (433)
Q Consensus 314 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 393 (433)
...++.+.+..+...+|...|.+++... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..++++|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456888888899999999999999875 456899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 394 KSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 394 ~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+.+|||||+++++|+|+ +++||++|+|.+...|+.+..+
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR 125 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccc
Confidence 99999999999999999 9999999999999888765543
No 86
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.3e-18 Score=147.65 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=104.6
Q ss_pred cceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 013965 316 HAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (433)
Q Consensus 316 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 395 (433)
..+.+.+..+...+|...|.++++.. ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46778888888999999999999875 55789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCc--cCeEEEEcCCCcccccccC
Q 013965 396 PIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGP 429 (433)
Q Consensus 396 ~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~ 429 (433)
+|||||+++++|+|+ +++||++|+|.+...|+.+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr 118 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 118 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHH
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHH
Confidence 999999999999999 9999999999998887654
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=151.92 Aligned_cols=119 Identities=38% Similarity=0.491 Sum_probs=95.4
Q ss_pred ccccceeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 013965 313 KANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 (433)
Q Consensus 313 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~ 392 (433)
....++.+.+..+...+|...|.+++.....+.++||||++++.++.++..|...++.+..+||+|++.+|..++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678899999999999999999999886567899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccccccCCCc--cCeEEEEcCCCcccccccCCC
Q 013965 393 GKSPIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLS 431 (433)
Q Consensus 393 g~~~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~ 431 (433)
|+.+|||||+++++|+|+ +++||++|+|.+...|+.+.-
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~G 135 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHcc
Confidence 999999999999999999 999999999999988876543
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.78 E-value=3.3e-18 Score=144.21 Aligned_cols=115 Identities=30% Similarity=0.408 Sum_probs=104.1
Q ss_pred ceeeeeeccChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 013965 317 AIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (433)
Q Consensus 317 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 395 (433)
++.+.+..+...+ |...|.++++.. ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4566666666666 999999999875 56789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 396 PIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 396 ~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+|||||+++++|+|+ +++||++|+|.+...|+.+.-+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCS
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 999999999999999 9999999999999999877654
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=145.00 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=102.5
Q ss_pred ccceeeeeeccChhH-HHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcC
Q 013965 315 NHAIRQHVDIVSESQ-KYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAG 393 (433)
Q Consensus 315 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g 393 (433)
..++.+.+..+...+ |...|.+++... ..+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 456777777777655 999999988765 567999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccccccCCCc--cCeEEEEcCC------CcccccccCC
Q 013965 394 KSPIMTATDVAARGLGN--CACVIIVLCT------FVLYLTLGPL 430 (433)
Q Consensus 394 ~~~iLvaT~~~~~Gldi--~~~Vi~~d~p------~~~~~~l~~~ 430 (433)
+.+|||||+++++|+|+ +++||++|+| .+...|+.+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~ 128 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRI 128 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHH
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHh
Confidence 99999999999999999 9999999999 7777665443
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.73 E-value=1.5e-17 Score=146.00 Aligned_cols=111 Identities=30% Similarity=0.339 Sum_probs=100.6
Q ss_pred eeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 013965 319 RQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 398 (433)
Q Consensus 319 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iL 398 (433)
.+.........|...|.+++... ..+++||||+++++++.++..|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34445567788999999999865 46789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 399 TATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 399 vaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
|||+++++|+|+ +++||++|+|.+...|+.+.
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~ 119 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRS 119 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHh
Confidence 999999999999 99999999999998886543
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.71 E-value=2.7e-17 Score=151.29 Aligned_cols=112 Identities=29% Similarity=0.328 Sum_probs=103.0
Q ss_pred eeeeeeccChhHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013965 318 IRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 397 (433)
Q Consensus 318 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~i 397 (433)
+.+.+..+...+|...|.+++.... .+++||||+++++++.++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4556667778889999999998764 678999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCc--cCeEEEEcCCCcccccccCC
Q 013965 398 MTATDVAARGLGN--CACVIIVLCTFVLYLTLGPL 430 (433)
Q Consensus 398 LvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~ 430 (433)
||||+++++|+|+ +++||++|+|.+...|+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~ 116 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRS 116 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHc
Confidence 9999999999999 99999999999998887553
No 92
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.50 E-value=2.7e-18 Score=145.51 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=102.2
Q ss_pred ceeeeeeccCh-hHHHHHHHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCC
Q 013965 317 AIRQHVDIVSE-SQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKS 395 (433)
Q Consensus 317 ~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~ 395 (433)
++.+.+..+.. ..|...|.++++.. ..+++||||++++.++.+++.|...++.+..+||+|++.+|..++++|++|+.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34555555666 78888888888764 45689999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 396 PIMTATDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 396 ~iLvaT~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
+|||||+++++|+|+ +++||++|+|.+...|+.+.-+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGR 120 (170)
Confidence 999999999999999 9999999999999998876543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.50 E-value=9.3e-14 Score=126.11 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=93.4
Q ss_pred cChhHHHHHHHHHHHhhc-CCCeEEEEeCCcccHHHHHHHHHhC-CCceEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEE
Q 013965 325 VSESQKYNKLVKLLEDIM-DGSRILIFMDTKKGCDQITRQLRMD-GWPALSIHGDKSQAERDWVLSEFKAG-KSP-IMTA 400 (433)
Q Consensus 325 ~~~~~k~~~l~~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~lh~~~~~~~r~~~~~~f~~g-~~~-iLva 400 (433)
.....|...|.+++.... .+.++||||++...++.++..|... |+.+..+||++++.+|.+++++|+++ ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999988753 5679999999999999999999885 99999999999999999999999998 677 7999
Q ss_pred ccccccCCCc--cCeEEEEcCCCcccccccCCCC
Q 013965 401 TDVAARGLGN--CACVIIVLCTFVLYLTLGPLSF 432 (433)
Q Consensus 401 T~~~~~Gldi--~~~Vi~~d~p~~~~~~l~~~~~ 432 (433)
|+++++|+|+ +++||+||+|++...|..+..+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR 205 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDR 205 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC------
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHh
Confidence 9999999999 9999999999999998876544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.10 E-value=1.8e-10 Score=116.52 Aligned_cols=146 Identities=23% Similarity=0.321 Sum_probs=90.9
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchh--HHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT--~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.+.|.++++.++.++.+++.|++|+||| ++++++.+..+.. ..+.++++++||..+|.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5566666655421 1266899999999999999888776543332
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
+..... ...+. ....+ ..++-.+|+.. . +.........+++||||||++ ++ ...+..++..++.+.|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEE
Confidence 211000 00000 00000 01122223221 1 111112233789999999994 44 45778888889888999
Q ss_pred EEEEec
Q 013965 281 LYWSAT 286 (433)
Q Consensus 281 l~~SAT 286 (433)
+++.=.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 988643
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.64 E-value=1.6e-06 Score=84.81 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCCCCCcHHHHHHHHhHhcC-----CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHH
Q 013965 117 AGFFEPTPIQAQGWPMALKG-----RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQE 191 (433)
Q Consensus 117 ~g~~~~~~~Q~~~i~~~l~g-----~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~ 191 (433)
+.|..+++-|.+++..++.. ..+++.|+.|+|||.+ +..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 56778999999999876532 3899999999999985 445555555431 23699999998888776655
Q ss_pred H
Q 013965 192 S 192 (433)
Q Consensus 192 ~ 192 (433)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.51 E-value=6e-07 Score=89.86 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.+++.|.+++..++.++.+++.|+.|+|||.. +..++..+... +.++++++||...+..+.+....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~~------ 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-------GLEVGLCAPTGKAARRLGEVTGR------ 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHTS------
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhcc------
Confidence 57899999999999999999999999999985 34444444432 66799999999888777654321
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcE
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQT 280 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~ 280 (433)
....+. +.+..... .+.........+++|||||++++. ...+..++..++...++
T Consensus 255 -~a~Tih---------~ll~~~~~-----------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 255 -TASTVH---------RLLGYGPQ-----------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARV 309 (574)
T ss_dssp -CEEEHH---------HHTTEETT-----------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEE
T ss_pred -cHHHHH---------HHHcCCcc-----------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEE
Confidence 111100 00000000 001112234468999999999753 34666777777777777
Q ss_pred EEEE
Q 013965 281 LYWS 284 (433)
Q Consensus 281 l~~S 284 (433)
+++.
T Consensus 310 ilvG 313 (574)
T 3e1s_A 310 LLVG 313 (574)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.48 E-value=1.9e-06 Score=87.53 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
+..+++.|.+|+..++.+..+++.||+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999999888899999999999986 44445555432 2568999999999999999888764
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.45 E-value=3e-07 Score=93.96 Aligned_cols=68 Identities=22% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHhHhcCC-cEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~-~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.+.+-|.+|+..++..+ -.+|.||+|+|||.+ +..++.++..+ +.++|+++||..-+.++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 57899999999998765 478899999999987 44444455443 6689999999999999998887643
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.9e-06 Score=89.56 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=56.6
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
+..+++.|.+|+..++.+.-++|.||.|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 4568999999999998887899999999999986 33344444321 15679999999999999999988753
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.37 E-value=3.3e-05 Score=79.00 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..+++-|.+++.. ....++|.|+.|||||.+.+ --+.++.... .....++|++++|+..+.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~-~ri~~l~~~~---~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLV-HRIAWLMSVE---NCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHH-HHHHHHHHTS---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHH-HHHHHHHHhC---CCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4679999999973 35679999999999999743 3334444321 1113479999999999999999998864
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.35 E-value=4.4e-06 Score=86.76 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 119 FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 119 ~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
...+++.|.+|+..++.+..+++.||+|+|||.+ +..++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 4568999999999999888899999999999986 44455555432 25689999999999999988887643
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.45 E-value=0.00051 Score=65.60 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=62.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQV 216 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 216 (433)
+-.++.|+.|+|||... . .+.. ....+|++||++++..+.+.+.+.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I-~----~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------ 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI-L----SRVN--------FEEDLILVPGRQAAEMIRRRANASGII------------------ 210 (446)
T ss_dssp EEEEEEECTTSCHHHHH-H----HHCC--------TTTCEEEESCHHHHHHHHHHHTTTSCC------------------
T ss_pred cEEEEEcCCCCCHHHHH-H----HHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc------------------
Confidence 45788999999999852 1 2211 123699999999999998887553210
Q ss_pred HHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEe
Q 013965 217 RDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSA 285 (433)
Q Consensus 217 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 285 (433)
.....-|.|.++++. +........+++||||||-.+ +.+ .+..++...+. .+++++.-
T Consensus 211 ----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTC-SEEEEEEC
T ss_pred ----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCC-CEEEEecC
Confidence 011233667655432 221222234899999999853 322 33333444433 55555443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.45 E-value=0.00027 Score=66.60 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 68999999998765556789999999999997665555544432 26789999999999988887777654
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.39 E-value=0.0002 Score=60.42 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=27.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.|+-.++.|++|+|||+..+- ++...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHHT-------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeecc
Confidence 356688999999999997433 33333322 56789998873
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.28 E-value=0.003 Score=63.53 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCC
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASS 199 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 199 (433)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+...+ +..+++++|++..|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~------~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK------DKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS------SCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC------CCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 579999999987755677999999999999976555554444332 5689999999999999988888765543
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.20 E-value=0.0011 Score=55.48 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred cHHHHHHHHhHh---------cCCcEEEEccCCCchhHH
Q 013965 123 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 123 ~~~Q~~~i~~~l---------~g~~~lv~a~TGsGKT~~ 152 (433)
.+.|.+++..+. .++.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 345666665443 378899999999999985
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.20 E-value=0.00056 Score=59.38 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=52.5
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
.|.-+++.|++|+|||++.+- ++..+..+ +.+++++.|...- . . ...+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~~-------g~kVli~~~~~d~--r-~--~~~i~srlG~~------------ 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEYA-------DVKYLVFKPKIDT--R-S--IRNIQSRTGTS------------ 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCCG--G-G--CSSCCCCCCCS------------
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHhc-------CCEEEEEEeccCc--h-H--HHHHHHhcCCC------------
Confidence 366788899999999997443 34444332 5678998876421 0 0 00111111110
Q ss_pred hHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhh
Q 013965 215 QVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRM 258 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~ 258 (433)
-..+.+.+...+.+.+..... -.++++|||||++.+
T Consensus 66 -------~~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -------LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp -------SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred -------ccccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 012335666677776665322 345899999999964
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.18 E-value=0.00076 Score=57.11 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=28.1
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.|+-.++.+++|+|||++.+ -++...... +.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll-~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELI-RRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEecc
Confidence 35668889999999998744 444443332 66899999873
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.004 Score=57.05 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=20.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhc
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNA 163 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~ 163 (433)
+.++++.||+|+|||++ +-.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 46899999999999986 4445555543
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.00053 Score=58.68 Aligned_cols=39 Identities=18% Similarity=0.032 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
|+-.++.+++|+|||++.+--+...... +.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEecc
Confidence 5567789999999998744444444333 66899999975
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.93 E-value=0.00041 Score=56.27 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999984
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.86 E-value=0.0028 Score=54.77 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=29.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.|+-.++.+++|+|||++.+--+...... +.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 46778899999999998744444444332 67899998874
No 113
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0036 Score=59.85 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=40.5
Q ss_pred ccceeEeeccchhhh---cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhc
Q 013965 245 RRVTYLVLDEADRML---DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 245 ~~~~~lVvDEah~~~---~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
..++++|+|++-++. +..+...+..+...+.++.-++.++|+...+....++.+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 468999999998653 3346677888887788888888899987666655555543
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.71 E-value=0.008 Score=55.47 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999985
No 115
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.68 E-value=0.0071 Score=55.07 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=70.7
Q ss_pred ChhHHHHHHHHHHHhhcC-CCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcccc
Q 013965 326 SESQKYNKLVKLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404 (433)
Q Consensus 326 ~~~~k~~~l~~~l~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~~~ 404 (433)
..+.|+..|.+++..... +.++|||++..+..+-+.+++...++....+.|.....++ +. .+....+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCC
Confidence 467788888888877643 5699999999999999999999999999999998654322 11 23444555557666
Q ss_pred ccCCC-----c--cCeEEEEcCCCcccc
Q 013965 405 ARGLG-----N--CACVIIVLCTFVLYL 425 (433)
Q Consensus 405 ~~Gld-----i--~~~Vi~~d~p~~~~~ 425 (433)
.-|+| . ++.||.||..++...
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~ 208 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQ 208 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCC
Confidence 66675 5 999999999887664
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.62 E-value=0.0032 Score=52.99 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.4
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.++=.++.+|+|+|||.. ++-.+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 366789999999999975 43334333332 5678999886
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.60 E-value=0.0065 Score=56.40 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=27.3
Q ss_pred CcHHHHHHHHhHh----cCC---cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 122 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 122 ~~~~Q~~~i~~~l----~g~---~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
+.|+|.+++..+. +++ .+++.||.|+|||..+. .+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3578888876654 343 48999999999998633 3444444
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.60 E-value=0.0028 Score=64.90 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhcc
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGA 197 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 197 (433)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... -....+|+|+.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999976 3678999999999999974433333333211 0135799999999999999999988644
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.55 E-value=0.0026 Score=54.35 Aligned_cols=40 Identities=20% Similarity=0.075 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.|.-.++.+++|+|||+. ++-.+...... +.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHHHc-------CCceEEEEecc
Confidence 366789999999999986 43334444332 56789999964
No 120
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.48 E-value=0.007 Score=62.47 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhc
Q 013965 120 FEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFG 196 (433)
Q Consensus 120 ~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 196 (433)
..+++-|.+++.. ....++|.|+.|||||.+.. --+.++.... .-....+|+|+.|+..|.++.+++.++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~-~ri~~ll~~~---~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLT-HRIAYLMAEK---HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHH-HHHHHHHHTT---CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHH-HHHHHHHHhc---CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4679999999976 35689999999999999743 3333443321 0113479999999999999999888753
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.45 E-value=0.0087 Score=60.12 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=72.9
Q ss_pred CCcHHHHHHHHhHhc--CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 121 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~--g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+. +..+.. .++|++|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 679999999988876 345799999999999753333 333321 369999998876654443221
Q ss_pred CCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHhcCCCC
Q 013965 199 SKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDR 278 (433)
Q Consensus 199 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~ 278 (433)
.|-+..|+.+. . .+...++||||||=.+. .+.+.+++.. .
T Consensus 240 -------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp----~pll~~ll~~----~ 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP----APLLHQLVSR----F 279 (671)
T ss_dssp -------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC----HHHHHHHHTT----S
T ss_pred -------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC----HHHHHHHHhh----C
Confidence 13344665432 1 13458999999998753 4456666542 2
Q ss_pred cEEEEEecc
Q 013965 279 QTLYWSATW 287 (433)
Q Consensus 279 ~~l~~SAT~ 287 (433)
..++||.|.
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 357777775
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.44 E-value=0.034 Score=49.74 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999853
No 123
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.34 E-value=0.019 Score=47.67 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
...+++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999985
No 124
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.34 E-value=0.0071 Score=66.20 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHhHhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 121 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 121 ~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.... ..-+..++|++++|+..+..+.+++.+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5799999999764 889999999999999985544555544321 011234799999999999999888766
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.014 Score=55.03 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 56899999999999985
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.077 Score=45.23 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.8
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
..-.+||+||+|.+... ....+..++........+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45689999999986543 3445556666655555555544
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.21 E-value=0.037 Score=46.52 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=73.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHH-HHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE-LAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~-L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
..+++..++|.|||.+++--++..+.+ |.+|+|+.=.+. .-..=.+.+.++ ++.+...-.+.....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 478889999999999977777777655 778888853331 000001122233 1222221111111000
Q ss_pred HHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEEeccchHHHH
Q 013965 216 VRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATWPKEVEH 293 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 293 (433)
...- +..- --..|...... +.-.++++||+||+-..+..+ -.+.+..++..-+....+|+.+--.|+++.+
T Consensus 97 ~~~~----~~~~-a~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 97 NREA----DTAA-CMAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp GHHH----HHHH-HHHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred CcHH----HHHH-HHHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 0000 01111111111 112569999999997655555 3456667777666666666666666776666
Q ss_pred HHH
Q 013965 294 LAR 296 (433)
Q Consensus 294 ~~~ 296 (433)
.+.
T Consensus 170 ~AD 172 (196)
T 1g5t_A 170 LAD 172 (196)
T ss_dssp HCS
T ss_pred hCc
Confidence 553
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.21 E-value=0.031 Score=53.94 Aligned_cols=40 Identities=15% Similarity=0.398 Sum_probs=23.5
Q ss_pred cceeEeeccchhhhcC-CcHHHHHHHHHhc-CCCCcEEEEEe
Q 013965 246 RVTYLVLDEADRMLDM-GFEPQIKKILSQI-RPDRQTLYWSA 285 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~-~~~~~~~~i~~~~-~~~~~~l~~SA 285 (433)
+.++|++||+|.+... .....+..++..+ ..+.++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4679999999998753 2333444444443 33455555443
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.20 E-value=0.016 Score=55.44 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=65.8
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe--cCHHHHHHHHHHHHHhccCCCceEEEEECCccChH
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA--PTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGP 214 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~--Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 214 (433)
..+++++++|+|||+.. .-+..++... +.+++++. |.|.-+.+ .+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~-~kLA~~l~~~-------G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~~~~~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV-AKLARYFQKR-------GYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVFGNPQE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHHTT-------TCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEECCTTC-----
T ss_pred eEEEEECcCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEEecCCC-----
Confidence 45888999999999963 2233333322 45566555 44544433 3333333333433221111
Q ss_pred hHHHhhcCCcEEEeChHHHH-HHHHcCCcccccceeEeeccchhhhcC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHH
Q 013965 215 QVRDLQKGVEIVIATPGRLI-DMLESHNTNLRRVTYLVLDEADRMLDM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVE 292 (433)
Q Consensus 215 ~~~~~~~~~~Iiv~Tp~~l~-~~l~~~~~~l~~~~~lVvDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 292 (433)
..|..+. +.+.. ..-..++++|+|.+=++... .....+..+.....++.-++.+.||...+..
T Consensus 165 -------------~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 165 -------------KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp -------------CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred -------------CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 1122211 11111 00123678888887543211 2344555666666677677777777655555
Q ss_pred HHHHHh
Q 013965 293 HLARQY 298 (433)
Q Consensus 293 ~~~~~~ 298 (433)
..++.+
T Consensus 230 ~~a~~f 235 (443)
T 3dm5_A 230 NQALAF 235 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.18 E-value=0.12 Score=42.72 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999985
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.034 Score=47.16 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999985
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.16 E-value=0.0083 Score=52.36 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999985
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.045 Score=49.18 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHh--HhcCCcEEEEccCCCchhHH
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~--~l~g~~~lv~a~TGsGKT~~ 152 (433)
-.+|+++.-.+...+.+...-. .+.+ .+.+.. +...+.+++.||+|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3567777666666666643210 0111 111111 12457899999999999985
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.95 E-value=0.032 Score=51.32 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=25.8
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
....+|++||+|.+........+..++...+.+.++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998862224445566666555556666543
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.91 E-value=0.017 Score=54.50 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999985
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.90 E-value=0.014 Score=53.24 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999853
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.74 E-value=0.038 Score=50.46 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++++++.||+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999985
No 138
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.64 E-value=0.032 Score=57.70 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc-ccccCC
Q 013965 334 LVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD-VAARGL 408 (433)
Q Consensus 334 l~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~-~~~~Gl 408 (433)
++-++.....+.+++|.++++.-|.+.++.+++ .++.+..+||+++..++..+++...+|+.+|+|+|. .+...+
T Consensus 407 ll~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~ 486 (780)
T 1gm5_A 407 QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486 (780)
T ss_dssp HHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC
T ss_pred HHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh
Confidence 333444444567899999999999888877764 378999999999999999999999999999999995 444445
Q ss_pred Cc--cCeEEEEc
Q 013965 409 GN--CACVIIVL 418 (433)
Q Consensus 409 di--~~~Vi~~d 418 (433)
++ +.+||+-.
T Consensus 487 ~~~~l~lVVIDE 498 (780)
T 1gm5_A 487 HFKNLGLVIIDE 498 (780)
T ss_dssp CCSCCCEEEEES
T ss_pred hccCCceEEecc
Confidence 55 66665533
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.055 Score=50.90 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999985
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.055 Score=50.75 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999985
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.086 Score=46.00 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.|.-+++.|++|+|||...+..+...+.. +..++++.-. +...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 57789999999999998533333322221 3456776643 3345565555544
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.094 Score=47.72 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=25.3
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
....+++|+||||+|... -...+.+.++.-++...+++.+
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 356899999999987543 2344666666544444444443
No 143
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.17 E-value=0.07 Score=50.85 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.....+.++||.++++.-+.++++.++. .++.+..+||+.+..++...++.+..++.+|+|+|.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 33334567899999999999999999988 588999999999999999999999999999999995
No 144
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.15 E-value=0.41 Score=43.80 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHh-----cCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-----~g~~~lv~a~TGsGKT~~ 152 (433)
|-.+|+++.-.+.+.+.|.+.-. .|.+ .|.+. ..+.+++.||+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 34678888766666666543200 0100 01121 236799999999999984
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.13 Score=49.17 Aligned_cols=55 Identities=25% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 95 PKPVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 95 p~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
..|-.+|++++--+...+.|.+. -+..|.-++...+ ...+.+++.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 35667899998777777776542 1112222222111 1246899999999999984
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.93 E-value=0.35 Score=41.56 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999985
No 147
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.92 E-value=0.15 Score=43.88 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+++.+|+|+|||+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467899999999999974
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.90 E-value=0.089 Score=48.58 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
.++++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999985
No 149
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.25 Score=46.52 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
|-.+|++++=-+...+.|++.= +..|--++.-. +...+.+++.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 4568888876666666665421 11111111111 11247899999999999984
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.79 E-value=0.11 Score=47.61 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=24.9
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
....+||+||+|.+... ....+.+++...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987543 3345556666655555555543
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.60 E-value=0.091 Score=48.81 Aligned_cols=42 Identities=10% Similarity=0.278 Sum_probs=28.8
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
.+.+++|+||+|. ++......+.+++...+++..+++.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999998 44445566777777766666666555443
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.53 E-value=0.12 Score=47.44 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCCcCCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHh-----cCCcEEEEccCCCchhHH
Q 013965 98 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMAL-----KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 98 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l-----~g~~~lv~a~TGsGKT~~ 152 (433)
-.+|+++.-.+...+.+...=. .|. ..|.+. ..+.+++.||+|+|||..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 3567777666666666653210 010 011111 135799999999999985
No 153
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.48 E-value=0.24 Score=45.74 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=25.1
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
....+|++||+|.+... ....+.+++........+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34689999999987543 3345666666655555555544
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.41 E-value=0.12 Score=46.93 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHH--HHHHHh-HhcCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ--AQGWPM-ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q--~~~i~~-~l~g~~~lv~a~TGsGKT~~ 152 (433)
|..+|+++.-.+.+.+.+.+.-- .|.. ...... +..++.+++.||+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 34567777656666655543200 0100 000011 12367899999999999985
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.28 E-value=0.31 Score=45.38 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=23.3
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
.....+|||||+|.+... ....+.+.+...+....+++.+
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 345689999999987533 2344555555544444444433
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.09 E-value=0.17 Score=45.79 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.++.+++.+++|+|||+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3667899999999999853
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.02 E-value=0.15 Score=50.29 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=26.5
Q ss_pred ccceeEeeccchhhhcCC--cHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 245 RRVTYLVLDEADRMLDMG--FEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~--~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
....+|+|||+|.+.... ....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 346799999999876532 33455555554 345677777764
No 158
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.89 E-value=0.4 Score=42.12 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999985
No 159
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.88 E-value=0.2 Score=46.24 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=26.2
Q ss_pred ccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 245 RRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
...+++|+||+|.+... ....+.++++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 3455667777665555555443
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.88 E-value=0.88 Score=42.25 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45799999999999985
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.76 E-value=0.14 Score=46.87 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999985
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.59 E-value=0.48 Score=44.05 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999985
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.58 E-value=0.22 Score=47.07 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999853
No 164
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.55 E-value=0.56 Score=39.25 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+.......+ .....|+|+| +.+.. .+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc-CCCcccC
Confidence 446999999999999999988876 37888899987765443333 2367899999 44444 5667888
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887643
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.67 Score=44.36 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
.|-.+|++++--+.+.+.|++.= +..|--++.-. +..-+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 44578999987777777765421 11111111111 11247899999999999984
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.64 Score=44.25 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKA---GFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
|-.+|++.+=-+.+.+.+.+. .+..|--++... +...+.+++.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 446788886555555555431 011111111111 11246799999999999984
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.44 E-value=0.19 Score=47.63 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.0
Q ss_pred CCcEEE--EccCCCchhHH
Q 013965 136 GRDLIG--IAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv--~a~TGsGKT~~ 152 (433)
+..+++ .||.|+|||..
T Consensus 50 ~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH
Confidence 346788 89999999985
No 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.43 E-value=0.63 Score=41.96 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=29.7
Q ss_pred ccceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHH
Q 013965 245 RRVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (433)
Q Consensus 245 ~~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 297 (433)
.++++||+||+-.+. +......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 458999999994332 22223445555555556555666777654444333433
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.41 E-value=0.19 Score=48.41 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
.++++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4699999999999985
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.37 E-value=0.23 Score=47.78 Aligned_cols=50 Identities=22% Similarity=0.091 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
.|.-+++.|++|+|||...+ -++..+... .+..++++..- .-..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEECC-CCHHHHHHHH
Confidence 35678999999999997533 333333321 14457776643 2334555444
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.34 E-value=0.29 Score=47.23 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=24.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP 180 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 180 (433)
.|.-+++.|++|+|||...+-.+....... +..++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 467799999999999985433333332221 445777764
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.34 E-value=0.076 Score=46.51 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=26.3
Q ss_pred ccceeEeeccchhhhc-----CCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 245 RRVTYLVLDEADRMLD-----MGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 245 ~~~~~lVvDEah~~~~-----~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
.+.+++|+||.-.+++ ......+..++..++..-..++++.-.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4578999999998776 334445666666554333344444443
No 173
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.26 E-value=0.22 Score=53.69 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=56.8
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 339 EDIMDGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 339 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.....+.++||.+++++-|.++++.+++ .++.+..+||+++..+|...++.+.+|..+|+|+|.
T Consensus 116 ~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 116 WLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred HHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 3334567899999999999999999988 567899999999998999999999999999999994
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.21 E-value=0.51 Score=43.86 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56899999999999985
No 175
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.72 Score=43.70 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 216 prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CSEEEEESSTTTTHHHH
T ss_pred CCCCceECCCCchHHHH
Confidence 36799999999999984
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.21 Score=45.46 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=24.1
Q ss_pred cceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 246 RVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 246 ~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
+..+||+||+|.+... ....+.+++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3789999999987543 2334555566555555555554
No 177
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.14 E-value=0.35 Score=47.12 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=27.0
Q ss_pred ceeEeeccchhhhcCC----------cHHHHHHHHHhcCCCCcEEEEEeccc
Q 013965 247 VTYLVLDEADRMLDMG----------FEPQIKKILSQIRPDRQTLYWSATWP 288 (433)
Q Consensus 247 ~~~lVvDEah~~~~~~----------~~~~~~~i~~~~~~~~~~l~~SAT~~ 288 (433)
-.+|++||+|.+.... ....+..++........++++.||=.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 3689999999876521 22334445555556667777777743
No 178
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.13 E-value=0.51 Score=38.73 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=53.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++..+..+++.+.+. ++.+..++|+.+.......+ ....+|+|+|. . ....+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCcccC
Confidence 568999999999999988888775 47888899987765543333 23578999993 2 2335678888
Q ss_pred eeEeec
Q 013965 248 TYLVLD 253 (433)
Q Consensus 248 ~~lVvD 253 (433)
++||.-
T Consensus 104 ~~Vi~~ 109 (175)
T 2rb4_A 104 TIVVNF 109 (175)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888843
No 179
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.68 E-value=0.1 Score=42.97 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=70.9
Q ss_pred cHHHHHHHHhHhcC--CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCC
Q 013965 123 TPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSK 200 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g--~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 200 (433)
.+-|..++..++.. +-.++.++-|++||...+.-++....++ |..|.+|+|+..-.....+....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~-------Gr~V~vLAp~~~s~~~l~~~~~l------ 102 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ-------GREVQIIAADRRSQMNMKQDERL------ 102 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT-------TCCEEEECSTTHHHHHHSCTTTC------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc-------CeEEEEEcCchHHHHHHHhhcCc------
Confidence 46788899888754 4577789999999998544444443333 78899999997655433222111
Q ss_pred ceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEeeccchhhhcCCcHHHHHHHHHh-cCCCCc
Q 013965 201 IKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQ-IRPDRQ 279 (433)
Q Consensus 201 ~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~~~~~~~~i~~~-~~~~~~ 279 (433)
. .+++ +. ..+......|..=+++|||||-+|... ++..++.. ...+.|
T Consensus 103 -~--------------------~~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~k----E~~~Lld~A~~~naq 151 (189)
T 2l8b_A 103 -S--------------------GELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSLK----ETLTLLDGAARHNVQ 151 (189)
T ss_dssp -S--------------------SCSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHHH----HHHHHHHHHHHTTCC
T ss_pred -C--------------------ccee-eh-----hhhhcCCCCCCCCCEEEEechhhcCHH----HHHHHHHHHHhcCCE
Confidence 0 0000 11 112222333445568999999988644 33333332 335678
Q ss_pred EEEEEec
Q 013965 280 TLYWSAT 286 (433)
Q Consensus 280 ~l~~SAT 286 (433)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8877544
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.67 E-value=0.22 Score=45.82 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=30.8
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQES 192 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~ 192 (433)
.|.-+++.|++|+|||.-++ -++..+... +..++|++.- .-..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~~-------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALND-------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHHT-------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEeCC-CCHHHHHHHH
Confidence 56779999999999998533 333333322 5567887653 3344555544
No 181
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.65 E-value=0.69 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.6
Q ss_pred HhcCCcEEEEccCCCchhHHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l 155 (433)
+..|+-+++.+|+|+|||+....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45688899999999999985433
No 182
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.37 E-value=0.51 Score=46.42 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=55.8
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..+++||.++++.-+....+.|+..++.+..+|++.+..++..++.....|..+|+++|.
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 357899999999999999999999999999999999999999999999999999999994
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.27 E-value=0.37 Score=43.96 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTK 194 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~ 194 (433)
.|.-+++.|++|+|||...+- ++..+..+ +..+++++-- .-..|+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 467899999999999975333 33333322 3567777643 444555555544
No 184
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.24 E-value=0.49 Score=51.28 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=62.7
Q ss_pred HhhcCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc-cccccCCCc--c
Q 013965 339 EDIMDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-DVAARGLGN--C 411 (433)
Q Consensus 339 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT-~~~~~Gldi--~ 411 (433)
.....+.+++|.|+|+.-+.+.++.+++ .++.+..+++..+..++..+++...+|..+|+|+| ..+...+.+ .
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 3344567999999999999988888764 35788999999999999999999999999999999 455555666 5
Q ss_pred CeEEE
Q 013965 412 ACVII 416 (433)
Q Consensus 412 ~~Vi~ 416 (433)
.+||+
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 55444
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.11 E-value=0.17 Score=50.15 Aligned_cols=18 Identities=39% Similarity=0.326 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+++.+|+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999984
No 186
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.01 E-value=0.6 Score=37.78 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+.......+ .....|+|+|. .+. ..+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCchhcC
Confidence 457999999999999999988875 47888899887665443332 23578999993 333 35667788
Q ss_pred eeEeeccc
Q 013965 248 TYLVLDEA 255 (433)
Q Consensus 248 ~~lVvDEa 255 (433)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88886543
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.97 E-value=5.8 Score=36.08 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=30.5
Q ss_pred ChHHHHHHHHcCCcccccceeEeeccchhhhc---CCcHHHHHHHHHhcCCCCcEEEEEec
Q 013965 229 TPGRLIDMLESHNTNLRRVTYLVLDEADRMLD---MGFEPQIKKILSQIRPDRQTLYWSAT 286 (433)
Q Consensus 229 Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~---~~~~~~~~~i~~~~~~~~~~l~~SAT 286 (433)
+...+.+.+..... .--+|||||+|.+.. ..+...+..+.... +...++ ++.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i-~~g~ 178 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFI-MSGS 178 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEE-EEES
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEE-EEcC
Confidence 34455555554211 244899999998764 35666777666554 334444 4443
No 188
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.89 E-value=0.82 Score=39.49 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCchhHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~ 154 (433)
.|.-+++.+|+|+|||....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46789999999999998533
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.69 E-value=0.14 Score=45.50 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+..|.-+++++|||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34678899999999999984
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.56 E-value=2.3 Score=38.45 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++-+++.+++|+|||+.
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34688899999999985
No 191
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.53 E-value=0.25 Score=55.86 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=28.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTR 182 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr 182 (433)
.++++++.+|+|+|||..+...+...... +.+++++..-.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEccc
Confidence 37899999999999998644443333322 66788887653
No 192
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.47 E-value=1 Score=43.57 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=40.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGAS 198 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 198 (433)
.+....+.+-||||||++ ++.+..-. +..+|||+|+...|.|++++++.+...
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAERH---------AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHHS---------SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 456788999999999984 33322211 224899999999999999999998643
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.42 E-value=0.55 Score=46.96 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=54.9
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHH--hcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF--KAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f--~~g~~~iLvaT~ 402 (433)
..+.+||.++++.-+....+.|.+.|+.+..++|+++..++..++..+ ..+..+||++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 457899999999999999999999999999999999999999999888 578899999996
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.33 E-value=0.53 Score=45.26 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHHHH-HH-HhHhcCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQ-GW-PMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~-~i-~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
|..+|+++.-.+.+.+.|...-. .|.+.. .+ ......+.+++.||+|+|||+.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 34678887656666666543200 010000 00 0012246799999999999985
No 195
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.23 E-value=1.4 Score=35.63 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=53.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+.......+ .....|+|+|. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 457999999999999998888775 47788899887765443332 23578999993 33 335667788
Q ss_pred eeEeeccc
Q 013965 248 TYLVLDEA 255 (433)
Q Consensus 248 ~~lVvDEa 255 (433)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 196
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.17 E-value=0.15 Score=47.40 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.|+-+++.+++|+|||...+..+ ..+... +..++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la-~~~~~~-------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV-ANAQAA-------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH-HHHHHT-------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHhC-------CCeEEEEECC
Confidence 46789999999999998643333 333321 4457777643
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.77 E-value=2.5 Score=40.15 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+++.++.|+|||+.
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577889999999985
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.71 E-value=0.89 Score=41.67 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=38.1
Q ss_pred cceeEeeccchhhh-cCCcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHHhc
Q 013965 246 RVTYLVLDEADRML-DMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYL 299 (433)
Q Consensus 246 ~~~~lVvDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 299 (433)
..+++++|.+-+.. +......+..+...+.++..++.+.++...+....++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35678899887643 2335566667767777888888999988777776666654
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.64 E-value=0.19 Score=39.79 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+..+.++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44578899999999999974
No 200
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.62 E-value=0.19 Score=45.71 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999985
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.50 E-value=0.21 Score=39.75 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
...+.++++.+|+|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 34578999999999999985
No 202
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.32 E-value=0.89 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+. ..+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh-cCCCCccC
Confidence 457999999999999999888876 378889999887665543332 3578999993 333 35667888
Q ss_pred eeEee
Q 013965 248 TYLVL 252 (433)
Q Consensus 248 ~~lVv 252 (433)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 203
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.31 E-value=0.52 Score=43.79 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455799999999999984
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.24 E-value=0.46 Score=49.91 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
..++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35799999999999985
No 205
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.04 E-value=0.43 Score=45.40 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+++.+|||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 355689999999999984
No 206
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.87 E-value=2.5 Score=34.36 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+. ++.+..++|+.+.......+ .....|+|+|. . ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhC
Confidence 457999999999999999888875 47788899887665443332 23678999993 2 2335667888
Q ss_pred eeEeeccch
Q 013965 248 TYLVLDEAD 256 (433)
Q Consensus 248 ~~lVvDEah 256 (433)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888865443
No 207
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.73 E-value=0.73 Score=42.94 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=25.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.|+-+++.+++|+|||.. .+.++..+... +..++++..-
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEECC
Confidence 467799999999999975 44444443332 3457777654
No 208
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.62 E-value=1.1 Score=37.13 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+.+.+... ++.+..++|+.+.......+ .....|+|+|. .+.. .+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhc-CCCcccC
Confidence 567999999999999998888775 47888888887654432222 23678999993 3333 4567778
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 116 ~~VI~~d 122 (185)
T 2jgn_A 116 KHVINFD 122 (185)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877633
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.61 E-value=1.6 Score=42.17 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+++.+|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999985
No 210
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.28 E-value=0.54 Score=43.04 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-~~q~~~~~~~~ 195 (433)
|.-+++.|++|+|||...+..+ ..+.... ...+.+..++++.-...+ ..++.+.+.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la-~~~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLS-VNVQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH-HHTTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHH-HHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999999998533322 2221110 001114567887654322 34444444444
No 211
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.79 E-value=0.38 Score=46.12 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV 186 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~ 186 (433)
...++++.|+||+|||.. +.+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 457899999999999996 44444444432 567888889888764
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.76 E-value=1.9 Score=44.53 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
..++++.||+|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 56899999999999985
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.74 E-value=2.1 Score=44.25 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999853
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.61 E-value=1.8 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=28.6
Q ss_pred cceeEeeccchhhhc-CCcHHHHHHHH---HhcC---CCCcEEEEEeccchHHHHHHHHh
Q 013965 246 RVTYLVLDEADRMLD-MGFEPQIKKIL---SQIR---PDRQTLYWSATWPKEVEHLARQY 298 (433)
Q Consensus 246 ~~~~lVvDEah~~~~-~~~~~~~~~i~---~~~~---~~~~~l~~SAT~~~~~~~~~~~~ 298 (433)
.++++++|=+-++.. ......+.++. +.+. +..-++.++||...+....++.+
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 467888887754321 11222333333 3232 33447788888776655555554
No 215
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.34 E-value=1 Score=38.22 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=44.2
Q ss_pred CeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 345 SRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 345 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.++||.|+++.-+.++++.+++. +..+..++|+.+..++.. .+.++..+|+|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCH
Confidence 48999999999999998887653 688999999988765543 34557779999994
No 216
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.27 E-value=1.5 Score=40.50 Aligned_cols=17 Identities=35% Similarity=0.169 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
|+-+.+.+|.|+|||..
T Consensus 131 G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56799999999999984
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.04 E-value=0.77 Score=51.27 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=69.3
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQ 215 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 215 (433)
|+.+.+.+|.|||||+. .++++...... |..++++.+-.+|.... +++++-..
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~---------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDI---------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCG----------------
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCH----------------
Confidence 57899999999999997 44555444332 66788888866665543 55554221
Q ss_pred HHHhhcCCcEEEeChH---HHHHHHHcCCcccccceeEeeccchhhhcCC-----------------cHHHHHHHHHhcC
Q 013965 216 VRDLQKGVEIVIATPG---RLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----------------FEPQIKKILSQIR 275 (433)
Q Consensus 216 ~~~~~~~~~Iiv~Tp~---~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-----------------~~~~~~~i~~~~~ 275 (433)
.++++.-|+ +.++.+.. ...-..+++||||.+-.+.... +...++++...+.
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 125555553 33332221 1112347899999888654321 2334666666665
Q ss_pred CCCcEEEEEeccch
Q 013965 276 PDRQTLYWSATWPK 289 (433)
Q Consensus 276 ~~~~~l~~SAT~~~ 289 (433)
...-+++|...+..
T Consensus 1556 ~~~~~~i~~~~~~~ 1569 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRM 1569 (1706)
T ss_dssp HHTCEEEEEECBC-
T ss_pred hCCcEEEEeecccc
Confidence 55556666666543
No 218
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.99 E-value=0.68 Score=39.35 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=25.3
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
+.-|..++..+..|.-+.+.+|.|+|||+.
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445677788888899999999999999984
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.98 E-value=0.89 Score=46.92 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 96 KPVKSFRDVGFPDYVMQEISKAG---FFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 96 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
.|..+|++++.-+...+.|.+.= +..|..++... +...+.+++.+|.|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34567888877778877776531 11111111000 11235799999999999974
No 220
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.91 E-value=2.2 Score=40.12 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++..+..+++.+.+. ++.+..++|+.+...+...+ ....+|+||| +.+.. .+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhc-CCCcccC
Confidence 678999999999999999888875 47788899887765443332 2367899999 44444 5668888
Q ss_pred eeEee
Q 013965 248 TYLVL 252 (433)
Q Consensus 248 ~~lVv 252 (433)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.71 E-value=0.88 Score=41.31 Aligned_cols=43 Identities=16% Similarity=-0.016 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELA 185 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~ 185 (433)
| .+++.+|.|+|||...+-.+...... +.+.+++++..-..+.
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQ------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHH------CTTCEEEEEESSCCCC
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeccchhh
Confidence 5 68999999999998644433333221 1155788888765553
No 222
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.56 E-value=2.4 Score=41.31 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.+++++++|+|||+..
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888899999999853
No 223
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.47 E-value=0.6 Score=45.68 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=26.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHh-HhcCCcEEEEccCCCchhHH
Q 013965 112 QEISKAGFFEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 112 ~~l~~~g~~~~~~~Q~~~i~~-~l~g~~~lv~a~TGsGKT~~ 152 (433)
..+.+.|. +++.+...+.. +..|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 34555555544 45688999999999999983
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.17 E-value=5.8 Score=35.61 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=29.1
Q ss_pred ccceeEeeccchhhh--cC-CcHHHHHHHHHhcCCCCcEEEEEeccchHHHHHHHH
Q 013965 245 RRVTYLVLDEADRML--DM-GFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQ 297 (433)
Q Consensus 245 ~~~~~lVvDEah~~~--~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 297 (433)
..++++|+|=+-++. .. .....+.++.....++.-++.+.|+...+....++.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~ 234 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK 234 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHH
Confidence 457899999876543 11 122234444444556666667777654444444443
No 225
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.16 E-value=2.4 Score=44.04 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.+++.+|+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 357899999999999984
No 226
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.14 E-value=2.4 Score=36.88 Aligned_cols=55 Identities=25% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..++||.++++.-+.++++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 457999999999999988877653 78899999998876544333 35678999994
No 227
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=86.48 E-value=0.67 Score=34.61 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 013965 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
.+.+..+..+.+++|||.+-..+...+..|+..|+.+..+.|++
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 33444445567899999998889999999999999889999984
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.38 E-value=1.5 Score=49.70 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=32.0
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQ 189 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~ 189 (433)
-.++++++.+++|+|||..+...+...+.. |.+++++.- .++..++.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEc-cccHHHHH
Confidence 357899999999999998755544444433 566788764 34445554
No 229
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=86.34 E-value=1.9 Score=38.86 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+.+.+.+. ++.+..++|+.+...+...+. ...+|+||| +.+. ..+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccce
Confidence 456999999999998888887664 478899999987766544432 357899999 3333 35667888
Q ss_pred eeEeeccc
Q 013965 248 TYLVLDEA 255 (433)
Q Consensus 248 ~~lVvDEa 255 (433)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88885443
No 230
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=85.14 E-value=1.1 Score=34.54 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCC-CeEEEEe-CCcccHHHHHHHHHhCCCceEEEcCCCCH
Q 013965 333 KLVKLLEDIMDG-SRILIFM-DTKKGCDQITRQLRMDGWPALSIHGDKSQ 380 (433)
Q Consensus 333 ~l~~~l~~~~~~-~~~lVF~-~s~~~~~~l~~~L~~~~~~~~~lh~~~~~ 380 (433)
.+...+...... .++|||| .+-..+..++..|+..|+.+..+.|++..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444445556 7999999 57778889999999999999999998643
No 231
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.00 E-value=0.58 Score=43.60 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=20.1
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
+..|..++++||||||||+ ++-++..
T Consensus 172 i~~G~~i~ivG~sGsGKST--ll~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT--LMKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH--HHHHHHT
T ss_pred HhcCCEEEEECCCCCCHHH--HHHHHHh
Confidence 4468999999999999998 4444433
No 232
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.88 E-value=8.6 Score=37.83 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=56.9
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+... .++.+..++|+.........+ ....+|+|||. .+ ...+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcccC
Confidence 66899999999999999999987643 247788889887765543333 24689999994 33 346678889
Q ss_pred eeEeeccc
Q 013965 248 TYLVLDEA 255 (433)
Q Consensus 248 ~~lVvDEa 255 (433)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88886553
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.84 E-value=0.63 Score=38.37 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|+-++++||+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999984
No 234
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.83 E-value=1.4 Score=37.81 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=43.2
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.|++++-+.++++.++.. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 458999999999999999888753 67889999998876654443 3578999995
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.83 E-value=3.1 Score=42.92 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+|+.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999984
No 236
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.66 E-value=2.4 Score=46.16 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD 218 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 218 (433)
-+|.|..|||||.+.+--+...+.... .+..+|+|+|.. +.-++.+++.+.....
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q-~TFt~~~rl~~~l~~~------------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQ-MTFLMEYELAKTPDMG------------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGG-GHHHHHHHHTCCSSCS-------------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCc-ccHHHHHHHHHhhhhc-------------------
Confidence 378899999999974444433333321 246799999975 3333444443322110
Q ss_pred hhcCCcEEEeChHHHHHH-HHcCCcccccceeEeeccch
Q 013965 219 LQKGVEIVIATPGRLIDM-LESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 219 ~~~~~~Iiv~Tp~~l~~~-l~~~~~~l~~~~~lVvDEah 256 (433)
...++-|.|..+|... +.... ....-++|+.+
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g----~~~~~ild~~~ 91 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG----GMSRPFLTSTG 91 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS----CTTSCEECHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC----CCcccCcCHHH
Confidence 0136788998887644 33221 12345667765
No 237
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.50 E-value=2.3 Score=36.73 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.+++++-+.++++.++. .++.+..++|+.+..++...+.. ..+|+|+|.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 45799999999999998877654 47899999999988766555432 478999994
No 238
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.49 E-value=1.1 Score=49.29 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=27.0
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
+++-+++|+|||=.-+|..-+..+.+.+.....++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 34456888888876666666667777776666666555443
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.09 E-value=0.74 Score=38.69 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|+-++++||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999984
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.81 E-value=0.78 Score=39.77 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
.|.-+++.|++|+|||.-.+-.+...+... +..++++.-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 467899999999999975433333333221 3346666543 3455565555544
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.16 E-value=1.1 Score=42.25 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 184 (433)
.+.++++.|+||+|||...-. ++..+... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcCH
Confidence 567899999999999985333 33333322 5678888887654
No 242
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=82.82 E-value=3.3 Score=38.70 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+. ++.+..++|+.+...+...+ ....+|+|+|. .+ ...+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 468999999999999999988876 36778888887765543333 23578999993 33 346678889
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988433
No 243
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=82.81 E-value=3.1 Score=29.09 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHhh--cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 013965 336 KLLEDI--MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (433)
Q Consensus 336 ~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 379 (433)
+.+... ..+.+++|+|.+-..+...+..|++.|+....+-|++.
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 334444 45678999999988899999999999986443337643
No 244
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.77 E-value=12 Score=37.03 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.|+|+.-+..+++.+.+... .++.+..++|+.........+ ....+|+|||. .+. ..+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcccC
Confidence 66899999999999999999987643 247788889887765543332 24688999993 333 36678889
Q ss_pred eeEeeccch
Q 013965 248 TYLVLDEAD 256 (433)
Q Consensus 248 ~~lVvDEah 256 (433)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 988865543
No 245
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.65 E-value=3.7 Score=35.17 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3568999999999999999888764 47888999987655443332 4678999994
No 246
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.36 E-value=7.5 Score=38.04 Aligned_cols=126 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccCh
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKG 213 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 213 (433)
..|.-+++.+++|+|||+.... +...... .+.+++++++... ..|+...+..++ +. ..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~--l~g~~~~------~G~~vi~~~~ee~-~~~l~~~~~~~g----~~---------~~ 336 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR--FVENACA------NKERAILFAYEES-RAQLLRNAYSWG----MD---------FE 336 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH--HHHHHHT------TTCCEEEEESSSC-HHHHHHHHHTTS----CC---------HH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH--HHHHHHh------CCCCEEEEEEeCC-HHHHHHHHHHcC----CC---------HH
Confidence 4578899999999999984322 2222221 1445677766432 335554443322 10 00
Q ss_pred HhHHHhhcCCcEEE-------eChHHHHHHHHcCCcccccceeEeeccchhhhcCC-----cHHHHHHHHHhcCC-CCcE
Q 013965 214 PQVRDLQKGVEIVI-------ATPGRLIDMLESHNTNLRRVTYLVLDEADRMLDMG-----FEPQIKKILSQIRP-DRQT 280 (433)
Q Consensus 214 ~~~~~~~~~~~Iiv-------~Tp~~l~~~l~~~~~~l~~~~~lVvDEah~~~~~~-----~~~~~~~i~~~~~~-~~~~ 280 (433)
. +.....+-+ .+.+.....+... ....+.++||+| -=.-++.. ....+..++..++. +.-+
T Consensus 337 -~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~-~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 337 -E---MERQNLLKIVCAYPESAGLEDHLQIIKSE-INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp -H---HHHTTSEEECCCCGGGSCHHHHHHHHHHH-HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred -H---HHhCCCEEEEEeccccCCHHHHHHHHHHH-HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Confidence 0 100001111 1334433332221 113457899999 55556665 56666666655543 4445
Q ss_pred EEEEecc
Q 013965 281 LYWSATW 287 (433)
Q Consensus 281 l~~SAT~ 287 (433)
++.|-..
T Consensus 411 ilvsh~~ 417 (525)
T 1tf7_A 411 LFTNTSD 417 (525)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 5555443
No 247
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.32 E-value=0.66 Score=42.59 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.8
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
+..|+.+++++|||||||+ ++-++..
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g 193 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIME 193 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 3468999999999999998 4444433
No 248
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.18 E-value=2.5 Score=39.23 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=44.9
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..++||.|+++.-+.++++.+.+. ++.+..++|+.+..+.... +..+..+|+|+|.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~ 136 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTP 136 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECH
Confidence 458999999999999998887653 7889999999887655443 4557789999994
No 249
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.17 E-value=2.1 Score=40.89 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=46.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+.++||.||+++-+..+++.+.+. ++++..++|... ....... ....+|+|||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 557999999999999999998876 477888888432 2223333 34579999993 333 355677 8887
Q ss_pred e
Q 013965 251 V 251 (433)
Q Consensus 251 V 251 (433)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 250
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.11 E-value=4.2 Score=37.68 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh---h-cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+. +..+..++|+.+...+...+ . ...+|+|+|. .+ ...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 568999999999999999988875 36778888887665443332 2 3578999993 33 346678889
Q ss_pred eeEeeccch
Q 013965 248 TYLVLDEAD 256 (433)
Q Consensus 248 ~~lVvDEah 256 (433)
++||.-+..
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 999876554
No 251
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=82.04 E-value=1.1 Score=34.24 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.8
Q ss_pred HHHHhhcCCCeEEEEeCCccc--HHHHHHHHHhCCCceEEEcCCC
Q 013965 336 KLLEDIMDGSRILIFMDTKKG--CDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~--~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
+.+..+..+.+++|||.+-.. +..++..|+..|+.+..+.|++
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 344445556789999999877 8999999999999988888884
No 252
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.01 E-value=1.2 Score=42.46 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 37899999999999985
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=82.00 E-value=0.87 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.++++|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 577899999999999995
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.99 E-value=11 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.++++++.|+|||+..
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999863
No 255
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=81.94 E-value=4.3 Score=37.16 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+. +..+..++|+.+.......+ ....+|+|+|. .+.. .+++..+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcccC
Confidence 567999999999999999988875 47788888887665443332 23578999993 3333 4557778
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887644
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=81.53 E-value=1 Score=37.78 Aligned_cols=18 Identities=39% Similarity=0.368 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+.+.||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577789999999999984
No 257
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=81.35 E-value=1.8 Score=32.14 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 013965 336 KLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 379 (433)
+.+..+..+.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 33444556678999999988999999999999985 778888853
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.25 E-value=0.79 Score=42.87 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|..++++||||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577899999999999984
No 259
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.06 E-value=0.78 Score=42.03 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.++++||||+|||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999985
No 260
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.00 E-value=5 Score=38.14 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=51.3
Q ss_pred EEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 175 VLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 175 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+||.++++.-+..+++.+.+. ++.+..++|+....+....+. ....|+|||. .+ ...+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~-~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA-SRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG-TSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh-hCCCCcccCCEE
Confidence 999999999999999888775 477888999877655433332 3578999994 33 346678888888
Q ss_pred ee
Q 013965 251 VL 252 (433)
Q Consensus 251 Vv 252 (433)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.99 E-value=1.2 Score=38.08 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|+-+.++||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3688899999999999983
No 262
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.96 E-value=4.5 Score=34.74 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT 401 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT 401 (433)
.+.++||.++++.-+.++++.++.. +..+..++|+..... ..+.+..+..+|+|+|
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~T 156 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGT 156 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEEC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEEC
Confidence 3458999999999999999888753 567788888765432 3345556778999999
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.79 E-value=3.2 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
|.-+.+.+|.|+|||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 567999999999999853
No 264
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.12 E-value=1 Score=36.93 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..++.+++.|++|||||+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999985
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.10 E-value=1.1 Score=37.90 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|+-++++||+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467799999999999984
No 266
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=80.10 E-value=11 Score=38.08 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=57.5
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh---h-cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL---Q-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++|+..+..+.+.+.+. ++++..++|+.........+ . ...+|+|||. .+ ...+++..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 668999999999999998888876 37778888876654443332 2 3578999983 33 345678889
Q ss_pred eeEeeccchhh
Q 013965 248 TYLVLDEADRM 258 (433)
Q Consensus 248 ~~lVvDEah~~ 258 (433)
++||+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998753
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.07 E-value=1.3 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++-+.+.||+|+|||+.
T Consensus 1 ~~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCCEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35578999999999984
No 268
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.05 E-value=1.8 Score=39.20 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.+..+.+.+|+|+|||+ ++..+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTT--ll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTT--TIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHH--HHHHHHHHH
Confidence 35678889999999998 444444444
No 269
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.93 E-value=1.4 Score=38.73 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467899999999999984
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.68 E-value=1.1 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
.+.++++|++|||||+..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999853
No 271
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.66 E-value=5.3 Score=37.35 Aligned_cols=73 Identities=8% Similarity=0.199 Sum_probs=53.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
..++||.|+++.-+..+++.+.+. ++.+..++|+.+.......+ .....|+|+|. .+ ...+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 458999999999999998888875 36788888887755443332 23678999994 33 345678889
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9888543
No 272
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.64 E-value=4.9 Score=34.12 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=38.8
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh---CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.+++++-+.++++.++. .++.+..++|+.+..++... +. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECH
Confidence 456799999999999999998876 46788899998765543333 22 3478999994
No 273
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.57 E-value=3.7 Score=34.20 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC-----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD-----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.++++.-+.++++.++.. +..+..++|+.+..+....+ .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCH
Confidence 457999999999999988887652 57888999998765443222 35678999995
No 274
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.55 E-value=1.3 Score=37.13 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 577899999999999984
No 275
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.52 E-value=3.3 Score=38.35 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
...++++.||+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999985
No 276
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.51 E-value=0.9 Score=37.10 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.++++|++|||||++
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999985
No 277
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.40 E-value=1.3 Score=37.26 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.5
Q ss_pred hHhcCCcEEEEccCCCchhHH
Q 013965 132 MALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~ 152 (433)
.+..|+-+.+.+|+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788899999999999983
No 278
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.27 E-value=5.2 Score=37.24 Aligned_cols=73 Identities=8% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh----hcCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL----QKGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++.-+..+++.+.+.+ +.+..++|+.+...+...+ .....|+|+|. .+ ...+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCC
Confidence 5689999999999999999888764 6788888887665443332 23578999993 32 335678888
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888644
No 279
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.15 E-value=1 Score=37.83 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356799999999999974
No 280
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.99 E-value=1.4 Score=37.67 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=19.1
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHHH
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHV 161 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~~ 161 (433)
+..|+-++++||.|+|||+ ++-++..+
T Consensus 13 ~~~G~ii~l~GpsGsGKST--Llk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSS--LIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHH--HHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHH--HHHHHhcc
Confidence 4468889999999999999 34444433
No 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.94 E-value=1.1 Score=39.85 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHhH--hcCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPIQ-AQGWPMA--LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~~--l~g~~~lv~a~TGsGKT~~ 152 (433)
|-.+|++++-.+.+.+.+.+.=. .|+. .+++..+ .-.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 34578888766666666654210 1221 1122211 1124499999999999984
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=78.90 E-value=0.91 Score=37.58 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|..++++||+|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3577899999999999983
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.81 E-value=2.5 Score=41.17 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHhHhcCCcEEEEccCCCchhHH
Q 013965 127 AQGWPMALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 127 ~~~i~~~l~g~~~lv~a~TGsGKT~~ 152 (433)
..+.-.+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34444566789999999999999984
No 284
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.58 E-value=1.1 Score=40.68 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.7
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+-+++.||||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 4578899999999985
No 285
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=78.51 E-value=1.3 Score=32.69 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=33.0
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 013965 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 341 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
+..+.+++|+|.+-..+...+..|.+.|+.+..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 44567899999998889999999999999998888874
No 286
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.35 E-value=14 Score=37.36 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHH---hh-cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRD---LQ-KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++|+..+..+.+.+.+.+ +++..++++.+....... +. ...+|+|||. .+ ...+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 6689999999999999998888763 677788887665444333 22 3578999983 33 335678889
Q ss_pred eeEeeccchh
Q 013965 248 TYLVLDEADR 257 (433)
Q Consensus 248 ~~lVvDEah~ 257 (433)
++||+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9999888764
No 287
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.19 E-value=3.7 Score=35.78 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35799999999999984
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=78.12 E-value=1.3 Score=37.03 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|.-+++.||+|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577899999999999984
No 289
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.00 E-value=2.2 Score=36.01 Aligned_cols=20 Identities=30% Similarity=0.089 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~ 154 (433)
.|.-+++.+++|+|||+.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46789999999999998533
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=77.92 E-value=1.5 Score=35.43 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.|+.|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999984
No 291
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.89 E-value=3 Score=48.95 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH----HHHhHhcCCcEEEEccCCCchhHHHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQ----GWPMALKGRDLIGIAETGSGKTLAYLL 155 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~----~i~~~l~g~~~lv~a~TGsGKT~~~~l 155 (433)
+.+.+.+.+.+.++. +.+.+.. ....+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445566777777774 5555532 223444578899999999999997643
No 292
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.82 E-value=12 Score=35.52 Aligned_cols=96 Identities=23% Similarity=0.214 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEEC--------CccChHhH
Q 013965 145 TGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYG--------GVPKGPQV 216 (433)
Q Consensus 145 TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~ 216 (433)
..+.|... +.-++...... ..+.++||.++++.-+..+.+.+.+. ++.+..++| +.+..++.
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~ 409 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQK 409 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHH
T ss_pred CCChHHHH-HHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHH
Confidence 44566654 44445443311 12668999999999999999888876 477888888 55554443
Q ss_pred HHh----hcCCcEEEeChHHHHHHHHcCCcccccceeEeeccch
Q 013965 217 RDL----QKGVEIVIATPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 217 ~~~----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
..+ .....|+|+|. .+. ..+++..+++||+-+..
T Consensus 410 ~~~~~F~~~~~~vLv~T~-----~~~-~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 410 LILDEFARGEFNVLVATS-----VGE-EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHHHHTSCSEEEECG-----GGG-GGGGSTTCCEEEESSCC
T ss_pred HHHHHHhcCCceEEEECC-----ccc-cCCCchhCCEEEEeCCC
Confidence 322 23578999993 333 35678888888866554
No 293
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.58 E-value=1.3 Score=40.08 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
-++++||||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999985
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=77.55 E-value=1.4 Score=37.09 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+..++-++++||+|||||+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34578899999999999984
No 295
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.53 E-value=4.6 Score=33.59 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=42.0
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD--GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.|+++.-+.++++.++.. .+.+..++|+.+.......+. ...+|+|+|.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 458999999999999999988765 467888999887654433332 2578999994
No 296
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=77.47 E-value=1.9 Score=36.67 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+.+.+|+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567899999999999984
No 297
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.44 E-value=1.4 Score=32.16 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=32.9
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 013965 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 341 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
...+.+++|||.+-..+...+..|+..|+.+..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34567899999999899999999999999888888874
No 298
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=77.30 E-value=1.5 Score=32.21 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=32.5
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCC
Q 013965 342 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
..+.+++|||.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4567899999999899999999999999888888874
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.23 E-value=1.1 Score=36.28 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.++++|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=77.18 E-value=1.3 Score=38.79 Aligned_cols=16 Identities=31% Similarity=-0.002 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.++++||||||||+.+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999853
No 301
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.97 E-value=2.7 Score=36.05 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhHHHH
Q 013965 138 DLIGIAETGSGKTLAYL 154 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~ 154 (433)
++++.++.|+|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58899999999999743
No 302
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=76.82 E-value=1.7 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+.+.+|+|+|||+.
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356788999999999984
No 303
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.78 E-value=5.6 Score=35.45 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
..++++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999985
No 304
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.59 E-value=2.7 Score=37.65 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCchhHHH
Q 013965 134 LKGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~ 153 (433)
..|.-+++.|++|+|||+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35788999999999999853
No 305
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.98 E-value=0.53 Score=38.41 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=49.1
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh----cCCcEEEeChHHHHHHHHcCCcccccc
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ----KGVEIVIATPGRLIDMLESHNTNLRRV 247 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~l~~~ 247 (433)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+.......+. ....|+|+| +.+.. .+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAAR-GIDIPDV 99 (170)
Confidence 457999999999988888877765 467778888766544332222 256799998 33333 4456667
Q ss_pred eeEeecc
Q 013965 248 TYLVLDE 254 (433)
Q Consensus 248 ~~lVvDE 254 (433)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7776544
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.05 E-value=1.7 Score=35.80 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..++++|++|||||++
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466899999999999985
No 307
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=76.00 E-value=5.7 Score=34.93 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=30.8
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHH-HHhHhcCC-----cEEEEccCCCchhHHH
Q 013965 107 PDYVMQEISKAGFFEPTPIQAQG-WPMALKGR-----DLIGIAETGSGKTLAY 153 (433)
Q Consensus 107 ~~~l~~~l~~~g~~~~~~~Q~~~-i~~~l~g~-----~~lv~a~TGsGKT~~~ 153 (433)
.+.+.+-|+-+|+ .|++... +..+++++ .+++.||.|+|||+.+
T Consensus 72 ~n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 72 SNRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp GCHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3478888887887 4666443 34455543 4899999999999853
No 308
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.97 E-value=2.5 Score=39.08 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=25.9
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.|+-+++.+++|+|||..++-. +..+... +..++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~l-a~~~~~~-------g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQV-IAAAQRE-------GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH-HHHHHHT-------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHH-HHHHHHC-------CCeEEEEeCC
Confidence 4678999999999999864433 3333322 4457777653
No 309
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.86 E-value=1.7 Score=39.62 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.8
Q ss_pred hHhcCCcEEEEccCCCchhHH
Q 013965 132 MALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+.++++.||+|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 344688999999999999984
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=75.44 E-value=1.4 Score=36.35 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.|++|||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999985
No 311
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.27 E-value=1.7 Score=36.57 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+.+.||+|||||+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999983
No 312
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=75.27 E-value=1.2 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|.-+.++||+|||||+.
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467789999999999984
No 313
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.26 E-value=1.9 Score=39.00 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
....+++.||+|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999984
No 314
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=75.06 E-value=4.6 Score=43.31 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCC----ceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRM----DGW----PALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~----~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.++++.-|.++++.++. .++ .+..+||+.+..++.+..+.+.+ .+|+|+|.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 456899999999999999888764 256 78999999999888888777777 89999995
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.00 E-value=1.6 Score=36.32 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 316
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=74.87 E-value=15 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=44.8
Q ss_pred HHHHHhhcCCCeEEEEeCC------cccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEE
Q 013965 335 VKLLEDIMDGSRILIFMDT------KKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s------~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLva 400 (433)
.+.++......+++||..+ --.|..+.++|.+.++....++=......++.+.+.......+.++.
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 3445555567789999984 78899999999999988777665545555555555443344444443
No 317
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.86 E-value=2.6 Score=38.97 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=27.4
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL 184 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L 184 (433)
.|.-+++.+|+|+|||+. ++.++..+... +..++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~~-------gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQKM-------GGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeccccc
Confidence 356799999999999985 44444443322 4457787665433
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.79 E-value=2.4 Score=35.25 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=26.7
Q ss_pred cccceeEeeccchhh--hcCCcHHHHHHHHHhcCCCCcEEEEEecc
Q 013965 244 LRRVTYLVLDEADRM--LDMGFEPQIKKILSQIRPDRQTLYWSATW 287 (433)
Q Consensus 244 l~~~~~lVvDEah~~--~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 287 (433)
..+.+++|+||+..+ .+..|...+++++.. ...+++-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 466789999998766 344466667666653 23355446665
No 319
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.63 E-value=1.4 Score=38.48 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHCCCCCCcHH-HHHHHHhHh--cCCcEEEEccCCCchhHH
Q 013965 97 PVKSFRDVGFPDYVMQEISKAGFFEPTPI-QAQGWPMAL--KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 97 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~-Q~~~i~~~l--~g~~~lv~a~TGsGKT~~ 152 (433)
|-.+|+++.-.+.....++..-. .+ ...++..+- -.+.+++.+|+|+|||+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 44577777666666555543210 00 011222111 134599999999999984
No 320
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.58 E-value=9.6 Score=32.88 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=40.8
Q ss_pred CeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 345 SRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 345 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.++||.|++++-+.++++.++.. ++.+..++|+.+..+....+ ....+|+|+|.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 58999999999999988877653 57788899988765443322 34678999995
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.56 E-value=2.2 Score=35.08 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+.+.+|.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999984
No 322
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.56 E-value=2 Score=36.52 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.++++.-+.++++.++. .++.+..++|+.+..++...+ .+.+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECH
Confidence 345899999999999999887765 367888999987655433322 2378999994
No 323
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.31 E-value=1.7 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.++++||||+|||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999853
No 324
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=74.28 E-value=5.7 Score=40.23 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=47.0
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhh-cCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQ-KGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+.++||.||+++-+..+++.+.+. ++++..++|.. ......... ...+|+||| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 567999999999999988888775 47888888842 222222222 357899999 34443 45566 7776
Q ss_pred e
Q 013965 251 V 251 (433)
Q Consensus 251 V 251 (433)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=74.21 E-value=2 Score=35.86 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+++.|+.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999984
No 326
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=74.16 E-value=2.3 Score=33.75 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478899999999984
No 327
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.13 E-value=13 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhc
Q 013965 347 ILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKA 392 (433)
Q Consensus 347 ~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~ 392 (433)
.+||...-+-...+...++..|..+..++++.....|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 3556666666666667777777777777777777666666666643
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.87 E-value=2.1 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=16.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHH
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHV 161 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~ 161 (433)
-.++.+|+|+|||.. +-++..+
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHH
T ss_pred cEEEECCCCCCHHHH--HHHHHHH
Confidence 578899999999984 4444443
No 329
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.81 E-value=1.8 Score=38.66 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999985
No 330
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.78 E-value=17 Score=37.36 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=54.2
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhc-------cCCCceEEEEECCccChHhHHHhhc---------CCcEEEeChHHHHH
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFG-------ASSKIKSTCIYGGVPKGPQVRDLQK---------GVEIVIATPGRLID 235 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~Iiv~Tp~~l~~ 235 (433)
+..+||.+|++.-+..+++.+.+.. ...++.+..++|+.+...+...+.. ...|+||| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 5689999999999999988887521 2346889999999877665544432 45799999 3
Q ss_pred HHHcCCcccccceeEee
Q 013965 236 MLESHNTNLRRVTYLVL 252 (433)
Q Consensus 236 ~l~~~~~~l~~~~~lVv 252 (433)
.+.. .+++..+++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4444 456778887764
No 331
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.75 E-value=2.1 Score=38.65 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.|+.+.+.+|+|+|||+ ++-+|..+.
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 57889999999999998 444444444
No 332
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.65 E-value=1.7 Score=37.62 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57889999999999998
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.54 E-value=1.5 Score=36.01 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.|..+++.|+.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999853
No 334
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.52 E-value=2.4 Score=37.06 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.++.+++.|++|||||+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 489999999999999995
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.45 E-value=3.8 Score=33.31 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=16.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
-+.+.++.|||||+. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 477889999999984 333444443
No 336
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.27 E-value=2.3 Score=39.40 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+.+++|+|+|||+.
T Consensus 157 g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45688999999999994
No 337
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=73.16 E-value=2 Score=34.60 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=19.6
Q ss_pred hcCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 134 LKGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
..|.-+.+.+|.|+|||+ ++-++..+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 356778899999999998 444444443
No 338
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=72.65 E-value=2.1 Score=34.47 Aligned_cols=15 Identities=13% Similarity=-0.172 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 339
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.49 E-value=3.8 Score=39.20 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
.|.-+++.|++|+|||.-.+- ++..+..+ +..+++++-- .-..|+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~-ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHH-HHHHHHHT-------TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHH-HHHHHHHc-------CCEEEEEECC-CCHHHHHHHHH
Confidence 456799999999999985433 33333322 4567777643 33344444443
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.47 E-value=1.7 Score=35.40 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
-++++|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999985
No 341
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.46 E-value=5.2 Score=38.04 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=45.8
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+.++||.+|++.-+..+++.+.+. ++++..++|+........-.....+|+||| +.+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 447999999999999999998886 477888887632221112223468999999 34444 44455 5444
No 342
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=72.28 E-value=8.7 Score=36.82 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.5
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+.+|+.+++.++.|+|||..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp EETTCEEEEECCSSSCHHHH
T ss_pred hccCCEEEEECCCCCCccHH
Confidence 44689999999999999985
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.20 E-value=2.3 Score=34.27 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
-+++++.++.|||||++.-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3689999999999999543
No 344
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=72.06 E-value=6.7 Score=42.70 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=40.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHhcCC----CCCCCCCCEEEEEecCHHHHHHHHHHHHHh
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVNAQP----FLAPGDGPIVLVLAPTRELAVQIQQESTKF 195 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 195 (433)
..+|.|.-|||||.+...-++..+.... ....-.-..+|+|+=|+.-|.++.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999985555565554321 000111346999999999999988887764
No 345
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=72.01 E-value=2.7 Score=38.22 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
-+++.|+.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 478899999999983
No 346
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=71.88 E-value=3.2 Score=30.59 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=32.4
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCC
Q 013965 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDK 378 (433)
Q Consensus 340 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~ 378 (433)
......+++|||.+-..+...+..|+..|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3445678999999988899999999999995 77788874
No 347
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.87 E-value=2.1 Score=34.78 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..++++|+.|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56789999999999984
No 348
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.84 E-value=2.1 Score=39.21 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.++|+||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5889999999999853
No 349
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=71.73 E-value=7.8 Score=35.82 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.|+++.-+.++++.+.+ .++.+..++|+....+....+. ..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 345899999999999998887765 3678899999988766555443 467999993
No 350
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.67 E-value=4 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
++.+++.||+|+|||..+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999853
No 351
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=71.46 E-value=2.1 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|..+++.|++|||||+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3467899999999999985
No 352
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=71.43 E-value=18 Score=26.83 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=44.1
Q ss_pred HHHHHhhcCCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEE
Q 013965 335 VKLLEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTA 400 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLva 400 (433)
.+.++......+++||.. +-..|..+.+.|...++....+.=....+.++.+.+.......+.++.
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 344555556789999994 667899999999999988777765555665555544433334444443
No 353
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=71.40 E-value=2.4 Score=32.65 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=32.8
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 013965 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (433)
Q Consensus 341 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 379 (433)
...+.+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 345678999999988899999999999985 788999853
No 354
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.37 E-value=1.8 Score=38.43 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+++.+|+|+|||+.
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 4599999999999984
No 355
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.37 E-value=2.8 Score=34.60 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..+..+++.|+.|||||+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567799999999999995
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=71.19 E-value=3.1 Score=34.19 Aligned_cols=19 Identities=37% Similarity=0.249 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.+..++++|+.|||||+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999853
No 357
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=71.07 E-value=7.2 Score=28.81 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.8
Q ss_pred hcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 013965 341 IMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (433)
Q Consensus 341 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 379 (433)
...+.+++|||.+-..+...+..|+..|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 345678999999988999999999999987777888854
No 358
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=70.98 E-value=4.7 Score=39.40 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=41.3
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.|+++.-+.+.++.+++. ++.+..+||+.+...+...+. ...+|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECH
Confidence 568999999999888888777654 899999999986554432221 2367999994
No 359
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.84 E-value=2.1 Score=37.01 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|.|||||+
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 360
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=70.69 E-value=6 Score=38.46 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIV 159 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~ 159 (433)
+.++++.++||||||.+ +-.++.
T Consensus 167 ~pHlLIaG~TGSGKSt~-L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVG-VNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHH
Confidence 46899999999999986 333333
No 361
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=70.61 E-value=7.9 Score=40.09 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.|+++.-+.+....+++. ++.+..+||+.+...+...+. +..+|+|+|.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 668999999999999888877664 899999999987655433221 3578999993
No 362
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=70.50 E-value=10 Score=39.12 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=46.0
Q ss_pred HHHHHhhcCCCeEEEEeCCcccHHHHHHHHH----hCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 335 VKLLEDIMDGSRILIFMDTKKGCDQITRQLR----MDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 335 ~~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+-++.....+.+++|.|+|+.-|.+.++.+. ..|+.+.++.|+++...|.... ...|+|+|.
T Consensus 106 LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 106 LPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3333333456789999999998888877664 3589999999999986555443 368999995
No 363
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.38 E-value=2.4 Score=36.11 Aligned_cols=17 Identities=35% Similarity=0.298 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|.|+|||+
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 364
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.37 E-value=2.5 Score=35.74 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=39.5
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC--------CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD--------GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.++++.-+.++++.+++. ++.+..++|+.+..+..+. + ....+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCH
Confidence 458999999999999988877643 5778889998754332111 1 24567999994
No 365
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.26 E-value=7.1 Score=43.00 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=29.8
Q ss_pred cccceeEeeccchhhhcCCcHHHHHHHHHhcCCCCcEEEEE
Q 013965 244 LRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWS 284 (433)
Q Consensus 244 l~~~~~lVvDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 284 (433)
+++-+++|+||+=.-+|...+..+.+.+..+..++-+|+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999988888777777777776665555555444
No 366
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.13 E-value=2.4 Score=37.97 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999985
No 367
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=70.10 E-value=8.4 Score=36.83 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=46.6
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+.++||.+|++.-+.++++.+.+. ++.+..+++..... ..... ....+|+||| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~-~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHH-HGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHH-HHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 347999999999999998888775 47777887765422 22222 2467999999 34444 455666 666
Q ss_pred e
Q 013965 251 V 251 (433)
Q Consensus 251 V 251 (433)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 368
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.96 E-value=3.5 Score=29.53 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=31.9
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCC
Q 013965 342 MDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKS 379 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~ 379 (433)
.. .+++|||.+-..+...+..|+..|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 78999999988899999999999999778888764
No 369
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.92 E-value=6.3 Score=38.53 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCeEEEEeCCcccHHHHHHHHHhC----CCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRMD----GWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.|+++.-+.+.++.++.. ++.+..+||+.+...+...+. ...+|+|+|.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 113 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 113 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECH
Confidence 568999999999998888877664 899999999986654433222 1367999994
No 370
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=69.85 E-value=3.1 Score=38.44 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.2
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-|+||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4455677876 56669999999976
No 371
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=69.58 E-value=2.6 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999994
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=69.41 E-value=2 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=13.6
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
+-+++++|+|+|||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4578899999999984
No 373
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=69.27 E-value=2.9 Score=38.96 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
..++++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999985
No 374
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=69.25 E-value=2.5 Score=39.68 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
-++|+||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4788999999999853
No 375
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.25 E-value=22 Score=30.91 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
.+.++||.++++.-+.++++.+++ .+..+..++|+......... +..+ .+|+|+|.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATP 184 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcH
Confidence 356799999999999999888876 35677889998876554333 3334 78999993
No 376
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=69.16 E-value=3 Score=35.03 Aligned_cols=18 Identities=33% Similarity=0.062 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+.-+.+.||+|||||+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345678899999999984
No 377
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=69.13 E-value=19 Score=26.07 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHhhcCCCeEEEEeC------CcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 338 LEDIMDGSRILIFMD------TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 338 l~~~~~~~~~lVF~~------s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
+.......+++||.. .-..|..+...|...++....+.=+..+..+..+.+.+.....+.++
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 333334567999984 55789999999998888877777666666666666655444455444
No 378
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=69.03 E-value=2.3 Score=37.73 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|+|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 379
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.02 E-value=4.6 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
++.+.+.+++|+|||+.
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688889999999985
No 380
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=69.02 E-value=3.1 Score=33.71 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.+++.++.|||||+..
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999853
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=69.01 E-value=2.4 Score=36.30 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788999999999998
No 382
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.93 E-value=2.1 Score=36.67 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=12.4
Q ss_pred hcCCcEEEEccCCCchhHH
Q 013965 134 LKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 134 l~g~~~lv~a~TGsGKT~~ 152 (433)
..|+-+.+.||+|+|||+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999984
No 383
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=68.90 E-value=2.4 Score=36.41 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|.|+|||+
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=68.83 E-value=2.7 Score=35.44 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=21.1
Q ss_pred cHHHHHHHHhHhcCCcEEEEccCCCchhHHH
Q 013965 123 TPIQAQGWPMALKGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 123 ~~~Q~~~i~~~l~g~~~lv~a~TGsGKT~~~ 153 (433)
++.+... ..+..+..+++.|++|||||+..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 23445778999999999999853
No 385
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=68.80 E-value=2.5 Score=37.19 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|+|||||+
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 386
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.76 E-value=9.1 Score=34.71 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=16.7
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
-+.+.||+|||||+. +-.+..+.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHh
Confidence 477889999999984 34455544
No 387
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=68.63 E-value=2.5 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|.|||||+
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 388
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=68.56 E-value=2.1 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..++++|+.|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999995
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.30 E-value=3.1 Score=35.69 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.+..+++.|++|||||+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999853
No 390
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.26 E-value=3.6 Score=37.45 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHhHhcCCc--EEEEccCCCchhHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
+..++.|.| ++.-|+||||||..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceE
Confidence 344567876 66679999999986
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=68.21 E-value=7.2 Score=39.30 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=48.7
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhcCCcEEEeChHHHHHHHHcCCcccccceeEe
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLV 251 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~lV 251 (433)
+.++||.++++.-+.++++.+.+. ++++..++|+.+.... ...+.+|+||| +.+..+ +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 568999999999999999888875 4788899998765432 23456999999 344443 3354 77776
No 392
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.08 E-value=7.5 Score=35.65 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=31.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHH-HHHHHHHHHHh
Q 013965 136 GRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTREL-AVQIQQESTKF 195 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L-~~q~~~~~~~~ 195 (433)
|.-+++.|++|+|||...+- ++..... +....+.+..++++.-...+ ..++.+.+.++
T Consensus 122 G~i~~I~G~~GsGKTtla~~-la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHT-LCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHH-HHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 46789999999999985332 2222211 10011125578888754421 33444444443
No 393
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=68.08 E-value=3 Score=34.76 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..++++|+.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999985
No 394
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=67.99 E-value=5.3 Score=31.06 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=33.2
Q ss_pred hhcCCCeEEEEeCCcccHHHHHHHHHhCCC-ceEEEcCCC
Q 013965 340 DIMDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDK 378 (433)
Q Consensus 340 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~lh~~~ 378 (433)
....+.+++|||.+-..+...+..|+..|+ .+..+.|++
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 344567899999999999999999999999 488899994
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=67.97 E-value=3.5 Score=34.03 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..++++|++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999985
No 396
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=67.75 E-value=1.7 Score=36.46 Aligned_cols=20 Identities=30% Similarity=-0.014 Sum_probs=16.1
Q ss_pred HhcCCcEEEEccCCCchhHH
Q 013965 133 ALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~ 152 (433)
+..+.-+.+.|++|||||+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34466788999999999984
No 397
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=67.67 E-value=15 Score=37.95 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=43.9
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 342 MDGSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
..+..++|.|+|+.-|.+.++.+.. .|+.+.++.|+++..+|.... ...|+++|+
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3567899999999999888776643 589999999999987665542 368999995
No 398
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=67.63 E-value=7.3 Score=38.35 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=25.2
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecC
Q 013965 137 RDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT 181 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 181 (433)
.+++|.+.||||||.+ +-.++..+.... ..+..+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~-L~tlI~sLl~~~---sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVG-VNAMLLSILFKS---TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHHHTTC---CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHH-HHHHHHHHHHhC---CCcceEEEEeCCC
Confidence 5799999999999986 444444444321 1123455555554
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=67.42 E-value=2.7 Score=36.87 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 400
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.32 E-value=4.2 Score=37.42 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.3
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
.+..++.|.| ++.-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778876 566699999999863
No 401
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=67.26 E-value=4.1 Score=37.54 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
.+..++.|.| ++.-|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778877 556699999999863
No 402
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.19 E-value=2.7 Score=37.06 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|||||+
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57889999999999998
No 403
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=67.11 E-value=3 Score=36.84 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=67.10 E-value=2.8 Score=36.88 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.||.|||||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788999999999998
No 405
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.10 E-value=2.9 Score=34.38 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+..+++.|++|||||+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 406
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.03 E-value=3.7 Score=37.69 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHhHhcCCc--EEEEccCCCchhHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
+..++.|.| ++.-|+||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 344567776 56669999999986
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.93 E-value=2.8 Score=36.31 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 408
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=66.84 E-value=2.9 Score=36.86 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.+|.|+|||+
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 57889999999999998
No 409
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=66.70 E-value=7.6 Score=30.52 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=31.0
Q ss_pred cCCCeEEEEeCCcccHHHHHHHHHhCCC-ceEEEcCCCC
Q 013965 342 MDGSRILIFMDTKKGCDQITRQLRMDGW-PALSIHGDKS 379 (433)
Q Consensus 342 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~lh~~~~ 379 (433)
..+.++||||.+-..+...+..|+..|+ .+..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3456899999998889999999999999 4888999874
No 410
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=66.66 E-value=4.2 Score=38.29 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=16.8
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.+ ++.-|+||||||.+
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeE
Confidence 34567776 66669999999986
No 411
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.53 E-value=3 Score=36.61 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 57889999999999998
No 412
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=66.47 E-value=2.5 Score=36.75 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|||||+
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57789999999999998
No 413
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=66.41 E-value=16 Score=34.16 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.0
Q ss_pred CcHHHHHHHHhHh---cCCcEEEEccCCCchhHHH
Q 013965 122 PTPIQAQGWPMAL---KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 122 ~~~~Q~~~i~~~l---~g~~~lv~a~TGsGKT~~~ 153 (433)
|-..=..+|..++ .|+.+.+.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3344456666655 5899999999999999853
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.37 E-value=3.4 Score=37.74 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..+++.||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999984
No 415
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.28 E-value=2.5 Score=37.76 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
.-++++||+|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4589999999999985
No 416
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=66.23 E-value=3.1 Score=36.26 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 417
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.96 E-value=4.1 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
..+++++++|||||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999853
No 418
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.90 E-value=4.2 Score=37.75 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=17.2
Q ss_pred HHhHhcCCc--EEEEccCCCchhHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
+..++.|.| ++.-|+||||||..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 334567876 56668999999976
No 419
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=65.87 E-value=4.5 Score=36.89 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.1
Q ss_pred HHHHhHhcCCc--EEEEccCCCchhHH
Q 013965 128 QGWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 128 ~~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..+..++.|.| ++.-|+||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 35556778876 56679999999976
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=65.85 E-value=4 Score=34.59 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
...+++.|++|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999953
No 421
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=65.82 E-value=3.9 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+..+++.|++|||||+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 422
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=65.81 E-value=4.3 Score=37.37 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=16.7
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.| ++.-|+||||||..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEE
Confidence 34567776 56669999999986
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=65.80 E-value=3.1 Score=36.83 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|||||+
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999998
No 424
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.79 E-value=4.7 Score=37.96 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=19.2
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
.+..++.|.| ++.-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5566778877 566689999999873
No 425
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.77 E-value=4.5 Score=37.37 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.0
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4455667876 55668999999976
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=65.74 E-value=4.2 Score=34.10 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=16.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHh
Q 013965 138 DLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
-.++.+|+|+|||.. +-++..+.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHh
Confidence 578889999999984 33444443
No 427
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.71 E-value=3.2 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999853
No 428
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.65 E-value=3.1 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57889999999999998
No 429
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.61 E-value=4.6 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=17.8
Q ss_pred HHhHhcCCc--EEEEccCCCchhHHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
+..++.|.+ ++.-|+||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445667876 566799999999863
No 430
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=65.60 E-value=2.9 Score=35.63 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~ 154 (433)
..+-+++.||+||||++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568889999999998543
No 431
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=65.60 E-value=4.3 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=16.8
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.+ ++.-|+||||||..
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceE
Confidence 34567776 66679999999976
No 432
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.59 E-value=7.6 Score=37.35 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999853
No 433
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.57 E-value=3.8 Score=34.93 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
...+++.|++|||||+.
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999985
No 434
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.53 E-value=4.4 Score=37.57 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=16.9
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.| ++.-|+||||||..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceE
Confidence 34567776 56679999999986
No 435
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.48 E-value=3.1 Score=37.03 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57889999999999998
No 436
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=65.36 E-value=4.4 Score=37.23 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=17.2
Q ss_pred HHhHhcCCc--EEEEccCCCchhHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
+..++.|.| ++.-++||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 344567876 56669999999986
No 437
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=65.30 E-value=2.4 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+++|+|||||+
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 47889999999999998
No 438
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.23 E-value=4.4 Score=37.40 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.8
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.| ++.-|+||||||..
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceee
Confidence 34567776 56669999999986
No 439
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.20 E-value=4.7 Score=37.22 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=17.9
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-|+||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 3445667876 56669999999986
No 440
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.13 E-value=3.7 Score=33.63 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.|+.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 441
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=65.06 E-value=3.5 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.|..+++.++.|||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999984
No 442
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.02 E-value=4.2 Score=32.70 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.+++.++.|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999853
No 443
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=64.96 E-value=4.8 Score=37.35 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.3
Q ss_pred HHhHhcCCc--EEEEccCCCchhHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
+..++.|.| ++.-|+||||||..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 344567876 56669999999975
No 444
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.83 E-value=4.4 Score=33.95 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 013965 138 DLIGIAETGSGKTLAYL 154 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~ 154 (433)
-.++.|+.|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 47899999999998643
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.75 E-value=3.3 Score=36.49 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57889999999999998
No 446
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=64.73 E-value=4.5 Score=37.39 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=17.7
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.+ ++.-|+||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445667876 56669999999975
No 447
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=64.51 E-value=3.9 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 448
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=64.50 E-value=2.8 Score=34.21 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.8
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
-+.+++++|||||+.
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999984
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=64.42 E-value=3.3 Score=36.23 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|.-+.+.+|.|+|||+
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57789999999999998
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.40 E-value=3.9 Score=34.51 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhHhcC----CcEEEEccCCCchhHHHHHHHHHH
Q 013965 108 DYVMQEISKAGFFEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 108 ~~l~~~l~~~g~~~~~~~Q~~~i~~~l~g----~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
..+.+-|+-+|+ ++... ...+..++.+ +.+++.+|.|+|||.. ...++..
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~-a~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF-GMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH-HHHHHHH
Confidence 456666654443 22222 3344444443 3589999999999985 3344443
No 451
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=64.39 E-value=3.5 Score=34.46 Aligned_cols=18 Identities=33% Similarity=0.252 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355689999999999995
No 452
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=64.20 E-value=15 Score=36.76 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=46.4
Q ss_pred CCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHh-hcCCcEEEeChHHHHHHHHcCCcccccceeE
Q 013965 172 GPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMLESHNTNLRRVTYL 250 (433)
Q Consensus 172 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~~~~l 250 (433)
+.++||.++++.-+..+++.+.+. ++++..++|.... ...... ....+|+|||. .+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHH-HHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 457999999999999999998876 3678888875322 122222 34688999993 4444 45564 7766
Q ss_pred e
Q 013965 251 V 251 (433)
Q Consensus 251 V 251 (433)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 453
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.15 E-value=4.1 Score=34.52 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+..+.+.|++|||||+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999843
No 454
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=64.11 E-value=4 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..+++.|+.|||||+.
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999995
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=64.03 E-value=4.1 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHHH
Q 013965 138 DLIGIAETGSGKTLAYL 154 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~~ 154 (433)
.+++.||+||||++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998543
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=63.97 E-value=4.3 Score=37.75 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=30.4
Q ss_pred CceEEE---cCCCCHHHHHHHHHHHhc--CCCCEEEEccccccCCCccCeEEEEc
Q 013965 369 WPALSI---HGDKSQAERDWVLSEFKA--GKSPIMTATDVAARGLGNCACVIIVL 418 (433)
Q Consensus 369 ~~~~~l---h~~~~~~~r~~~~~~f~~--g~~~iLvaT~~~~~Gldi~~~Vi~~d 418 (433)
.++..+ .++++...+..+.+.... ....|+++|--... .++++.++.++
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~-~~~~d~~~~l~ 359 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL-EDVADVIINVK 359 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG-GGGCSEEEEEE
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH-HhhCCEEEEEE
Confidence 556665 467888888888877764 22356666643321 23377777765
No 457
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=63.96 E-value=4.2 Score=37.75 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
-.+++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999854
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.75 E-value=8.6 Score=31.57 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=22.7
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHH
Q 013965 139 LIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEST 193 (433)
Q Consensus 139 ~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~ 193 (433)
++|.+++|||||.-+. ++... +..+++++.-...-..+.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~-------~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD-------APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS-------CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHH-----HHHhc-------CCCeEEEecCCCCCHHHHHHHH
Confidence 6899999999997422 22211 2347888875443334444333
No 459
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=63.66 E-value=4.6 Score=33.56 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.|+.|||||+.
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999995
No 460
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.46 E-value=5 Score=37.46 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHhHhcCCc--EEEEccCCCchhHHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
+..++.|.+ ++.-|+||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 334567776 666699999999863
No 461
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=63.44 E-value=4.1 Score=34.28 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.+++.|+.|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 462
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=63.43 E-value=5.6 Score=31.25 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=31.9
Q ss_pred cCCCeEEEEeCCc--ccHHHHHHHHHhCCCceEEEcCCC
Q 013965 342 MDGSRILIFMDTK--KGCDQITRQLRMDGWPALSIHGDK 378 (433)
Q Consensus 342 ~~~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~lh~~~ 378 (433)
..+.++||||.+- ..+..++..|+..|+.+..+.|++
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
Confidence 3467899999987 588999999999999988899984
No 463
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=63.31 E-value=6.5 Score=35.61 Aligned_cols=19 Identities=26% Similarity=-0.017 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHHH
Q 013965 136 GRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~~ 154 (433)
|.-+++.+++|+|||...+
T Consensus 98 g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999998533
No 464
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=63.22 E-value=4.8 Score=37.41 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=16.7
Q ss_pred HhHhcCCc--EEEEccCCCchhHH
Q 013965 131 PMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 131 ~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
..++.|.| ++.-++||||||..
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCceEEEEeecCCCCCccee
Confidence 34567776 66669999999975
No 465
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=63.08 E-value=15 Score=32.91 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=42.1
Q ss_pred CCeEEEEeCCcccHHHHHHHHHh----CCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEcc
Q 013965 344 GSRILIFMDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATD 402 (433)
Q Consensus 344 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT~ 402 (433)
+.++||.++++.-+.++++.+++ .+..+..+||+.+..+.... +. ..+|+|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECH
Confidence 56899999999999999988875 35788999999887654333 32 377999994
No 466
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.03 E-value=4.6 Score=37.48 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=18.3
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-|+||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 4556678876 55669999999986
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=63.01 E-value=2 Score=37.68 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45699999999999985
No 468
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=62.81 E-value=5.2 Score=20.08 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCC
Q 013965 8 SADPSSYRDRRSD 20 (433)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (433)
+||.+.||...+.
T Consensus 3 rggasq~rpsqrh 15 (26)
T 1k2d_P 3 RGGASQYRPSQRH 15 (26)
T ss_pred cccccccCccccc
Confidence 4556666655433
No 469
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=62.68 E-value=4.4 Score=33.56 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=13.1
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999984
No 470
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.54 E-value=3.5 Score=34.35 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.8
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
..+++.|+.|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999985
No 471
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.31 E-value=5.7 Score=37.82 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHH
Q 013965 137 RDLIGIAETGSGKTLAY 153 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~ 153 (433)
+.+++++++|+|||+..
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999853
No 472
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.30 E-value=5.1 Score=37.80 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=18.7
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-|+||||||..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 5566778876 56668999999986
No 473
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=62.30 E-value=13 Score=40.18 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=51.6
Q ss_pred HHhhcCCCeEEEEeCCcccHHHHHHHHHhCCCceEEEcCCCCHHHHHHHHHHHhcCCCCEEEEc-----cccccCCC-c-
Q 013965 338 LEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTAT-----DVAARGLG-N- 410 (433)
Q Consensus 338 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~lh~~~~~~~r~~~~~~f~~g~~~iLvaT-----~~~~~Gld-i- 410 (433)
+.....+.++||.++++.-+.+.++.++...-.+..++|+.+ .++..+|+|+| +.+.++-. +
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 333446779999999999999999999876558899999986 34678899999 45555544 3
Q ss_pred -cCeEEEE
Q 013965 411 -CACVIIV 417 (433)
Q Consensus 411 -~~~Vi~~ 417 (433)
+.+||+=
T Consensus 290 ~l~lVVID 297 (1108)
T 3l9o_A 290 EVAWVIFD 297 (1108)
T ss_dssp HEEEEEEE
T ss_pred cCCEEEEh
Confidence 6665553
No 474
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=62.23 E-value=9.8 Score=29.27 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCCeEEEEeCCcccHHHHHHHHHhCCCc-eEEEcCCCC
Q 013965 343 DGSRILIFMDTKKGCDQITRQLRMDGWP-ALSIHGDKS 379 (433)
Q Consensus 343 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~lh~~~~ 379 (433)
.+.+++|||.+=..+...+..|.+.|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999999988899999999999995 778889873
No 475
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=62.07 E-value=4.9 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.+.-+++.|+.|||||+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999953
No 476
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=61.95 E-value=4.9 Score=35.00 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHH
Q 013965 135 KGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~ 152 (433)
.+..+.+.+|+|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466789999999999984
No 477
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=61.95 E-value=5 Score=33.92 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..+++.|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999985
No 478
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.79 E-value=5.8 Score=33.03 Aligned_cols=17 Identities=29% Similarity=-0.089 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+.-+.+.|+.|||||+.
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688899999999984
No 479
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=61.57 E-value=15 Score=39.08 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=48.3
Q ss_pred hccCCHHHHHHHHHh----cCceeccCCCCCCCCCCcCCC--CCHHHHHHHHHCCCCCCc----HHHHHHHHhHhc---C
Q 013965 70 VAAMSEREVEEYRQQ----REITVEGRDVPKPVKSFRDVG--FPDYVMQEISKAGFFEPT----PIQAQGWPMALK---G 136 (433)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~i~~~~~~~p~~~~~f~~~~--l~~~l~~~l~~~g~~~~~----~~Q~~~i~~~l~---g 136 (433)
...+++..+-+-.+. +.|..---.+--.++.|..++ ..++.++........++- .+=..|+..++. .
T Consensus 65 L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~n 144 (1052)
T 4anj_A 65 LMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLS 144 (1052)
T ss_dssp SSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 344555555433222 344433223333455566664 467777776654443332 334555555543 5
Q ss_pred CcEEEEccCCCchhHHHH
Q 013965 137 RDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~~~ 154 (433)
+.+|+.|+.|+|||.+.-
T Consensus 145 QsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 145 QSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEecCCCCCHHHHHH
Confidence 679999999999998743
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=61.51 E-value=9.2 Score=31.15 Aligned_cols=16 Identities=38% Similarity=0.206 Sum_probs=13.5
Q ss_pred CcEEEEccCCCchhHH
Q 013965 137 RDLIGIAETGSGKTLA 152 (433)
Q Consensus 137 ~~~lv~a~TGsGKT~~ 152 (433)
.-+++.++.|+|||+.
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578899999999984
No 481
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.51 E-value=20 Score=43.02 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH-HH---HhHhcCCcEEEEccCCCchhHHHH
Q 013965 106 FPDYVMQEISKAGFFEPTPIQAQ-GW---PMALKGRDLIGIAETGSGKTLAYL 154 (433)
Q Consensus 106 l~~~l~~~l~~~g~~~~~~~Q~~-~i---~~~l~g~~~lv~a~TGsGKT~~~~ 154 (433)
|...+.+.+.+.|+. +.+.+.. ++ ..+.....++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566666778874 5555533 33 334446779999999999999765
No 482
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.50 E-value=6.8 Score=39.14 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.1
Q ss_pred hHhcCCcEEEEccCCCchhHH
Q 013965 132 MALKGRDLIGIAETGSGKTLA 152 (433)
Q Consensus 132 ~~l~g~~~lv~a~TGsGKT~~ 152 (433)
.+..++.+++.+|+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 455688999999999999984
No 483
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.25 E-value=4.8 Score=40.14 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 484
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=61.22 E-value=6.1 Score=36.73 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=18.6
Q ss_pred HHHhHhcCCc--EEEEccCCCchhHH
Q 013965 129 GWPMALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 129 ~i~~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.+..++.|.| ++.-++||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4566778876 55668999999976
No 485
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.21 E-value=4.2 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=11.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 013965 136 GRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~~ 153 (433)
+..+++.|+.|||||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999953
No 486
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=61.18 E-value=4.9 Score=33.53 Aligned_cols=15 Identities=33% Similarity=0.149 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+.+.|+.|||||+.
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=61.05 E-value=4.4 Score=37.46 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHH
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVH 160 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~ 160 (433)
.|.-+.+.+|.|||||+ ++-++.-
T Consensus 29 ~Ge~~~llGpsGsGKST--LLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT--LLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHHT
T ss_pred CCCEEEEECCCCchHHH--HHHHHhc
Confidence 47778999999999998 4444443
No 488
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=60.84 E-value=5.1 Score=32.00 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+++.++.|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999985
No 489
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=60.81 E-value=5.4 Score=33.33 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHHH
Q 013965 135 KGRDLIGIAETGSGKTLAY 153 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~ 153 (433)
.+.-+++.|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999953
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=60.80 E-value=4.3 Score=36.32 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCchhH
Q 013965 135 KGRDLIGIAETGSGKTL 151 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~ 151 (433)
.|+-+.+.||.|+|||+
T Consensus 63 ~Ge~~~i~G~NGsGKST 79 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS 79 (290)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 47889999999999998
No 491
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.79 E-value=4.9 Score=33.41 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHH
Q 013965 138 DLIGIAETGSGKTLA 152 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~ 152 (433)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999984
No 492
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.78 E-value=6.1 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=17.6
Q ss_pred HHhHhcCCc--EEEEccCCCchhHHH
Q 013965 130 WPMALKGRD--LIGIAETGSGKTLAY 153 (433)
Q Consensus 130 i~~~l~g~~--~lv~a~TGsGKT~~~ 153 (433)
+..++.|.| ++.-|+||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 334567876 666699999999863
No 493
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=60.72 E-value=4.8 Score=33.91 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHH
Q 013965 138 DLIGIAETGSGKTLAY 153 (433)
Q Consensus 138 ~~lv~a~TGsGKT~~~ 153 (433)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 494
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.66 E-value=5.3 Score=37.27 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=16.2
Q ss_pred hHhcCCc--EEEEccCCCchhHH
Q 013965 132 MALKGRD--LIGIAETGSGKTLA 152 (433)
Q Consensus 132 ~~l~g~~--~lv~a~TGsGKT~~ 152 (433)
.++.|.| ++.-|+||||||..
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeE
Confidence 3557776 56669999999976
No 495
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.58 E-value=37 Score=25.50 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=41.6
Q ss_pred HHHHhhcCCCeEEEEeCC------cccHHHHHHHHHhCCCc---eEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013965 336 KLLEDIMDGSRILIFMDT------KKGCDQITRQLRMDGWP---ALSIHGDKSQAERDWVLSEFKAGKSPIMT 399 (433)
Q Consensus 336 ~~l~~~~~~~~~lVF~~s------~~~~~~l~~~L~~~~~~---~~~lh~~~~~~~r~~~~~~f~~g~~~iLv 399 (433)
+.++......+++||..+ --.|..+.++|...++. ...+.=....+.+..+.+.......+.++
T Consensus 7 ~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vf 79 (121)
T 3gx8_A 7 KAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLY 79 (121)
T ss_dssp HHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 344444456789999984 77899999999998877 55555455565555554444333344444
No 496
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.56 E-value=2.8 Score=38.41 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999984
No 497
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=60.41 E-value=5.3 Score=36.15 Aligned_cols=26 Identities=8% Similarity=-0.100 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCchhHHHHHHHHHHHh
Q 013965 135 KGRDLIGIAETGSGKTLAYLLPAIVHVN 162 (433)
Q Consensus 135 ~g~~~lv~a~TGsGKT~~~~l~~l~~~~ 162 (433)
.|.-+.+.||+|||||+. +-++..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL--~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT--ARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCEEEEEECCCCchHHHH--HHHHHhhc
Confidence 355688899999999984 33444443
No 498
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.40 E-value=5.3 Score=34.48 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 013965 136 GRDLIGIAETGSGKTLA 152 (433)
Q Consensus 136 g~~~lv~a~TGsGKT~~ 152 (433)
+..++++||.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 46799999999999984
No 499
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=60.29 E-value=5.8 Score=38.55 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCchhHHHHHHHHHHHhcCCCCCCCCCCEEEEEe
Q 013965 133 ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLA 179 (433)
Q Consensus 133 ~l~g~~~lv~a~TGsGKT~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 179 (433)
+..|.-+++.|++|+|||...+-.+....... +..++++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-------g~~vl~~s 278 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-------GKKVGLAM 278 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-------CCCEEEEE
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-------CCcEEEEe
No 500
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=60.12 E-value=48 Score=31.86 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEecCHHHHHHHHHHHHHhccCCCceEEEEECCccChHhHHHhhc----CCcEEEe
Q 013965 153 YLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQK----GVEIVIA 228 (433)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~ 228 (433)
.+.-++...... +...++++....-+..+.+.+.+.+. ++..++|+.+.......+.. ..+|+||
T Consensus 335 ~l~~~l~~~~~~-------~~~~~ivf~~~~~~~~l~~~L~~~~~----~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 335 WIAKLAIKLAQK-------DENAFVMFKHVSHGKAIFDLIKNEYD----KVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHHTT-------TCEEEEEESSHHHHHHHHHHHHTTCS----SEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHhc-------CCCeEEEEecHHHHHHHHHHHHHcCC----CeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Q ss_pred ChHHHHHHHHcCCcccccceeEeeccch
Q 013965 229 TPGRLIDMLESHNTNLRRVTYLVLDEAD 256 (433)
Q Consensus 229 Tp~~l~~~l~~~~~~l~~~~~lVvDEah 256 (433)
|+ +.+.. .+++.++++||+..+.
T Consensus 404 T~----~~~~~-GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 404 SY----GVFST-GISVKNLHHVVLAHGV 426 (510)
T ss_dssp EH----HHHHH-SCCCCSEEEEEESSCC
T ss_pred Ec----Chhhc-ccccccCcEEEEeCCC
Done!