Citrus Sinensis ID: 013965
Local Sequence Feature Prediction
| Prediction and Method | Result |
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Function Prediction
Annotation transfered from Closely Related SWISS-PROT Entries 
| Annotation | Function Description | Confidence Level | Reference Protein |
| DEAD-box ATP-dependent RNA helicase 20 | ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. | confident | Q9C718 |
| DEAD-box ATP-dependent RNA helicase 20 | ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. | confident | Q5QMN3 |
| Probable ATP-dependent RNA helicase DDX5 | Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre-mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for estrogen receptor ESR1 and androgen receptor AR. Increases ESR1 AF-1 domain-mediated transactivation and ESR1 AF-1 and AF-2 domains transcriptional synergistic activity. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53-dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as transcriptional repressor in a promoter-specicic manner; the function probbaly involves association with histone deacetylases, such as HDAC1. | probable | Q5R4I9 |
Prediction of Enzyme Commission Number
| EC Number | Description | Confidence Level | |||||||||
| 3.-.-.- | Hydrolases. | probable | |||||||||
| 3.6.-.- | Acting on acid anhydrides. | probable | |||||||||
| 3.6.4.- | Acting on acid anhydrides; involved in cellular and subcellular movement. | probable | |||||||||
| 3.6.4.13 | RNA helicase. | probable |
Spatial Structural Prediction
Structural Models Based on Templates
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Template: 3FE2, chain A Confidence level:very confident Coverage over the Query: 76-309 View the alignment between query and template View the model in PyMOL |
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Template: 2I4I, chain A Confidence level:very confident Coverage over the Query: 86-431 View the alignment between query and template View the model in PyMOL |
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Template: 1TF5, chain A Confidence level:confident Coverage over the Query: 51-431 View the alignment between query and template View the model in PyMOL |