Citrus Sinensis ID: 013966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MALPMLDSALDVDKLSYEIFSILENKFLFGYDEPNKLSLHHQTKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTIIPTPRTSSATTLSTLSSSC
ccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEcccccccccccccHHHHHHHHHcccccccccEEEEEcccccEEEEEcccccccccHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccccccEEEEccccccccccccHHHccccccHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
ccccHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccEHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccHHHHcccEEEEcccHHHcccEEEEcccHcccccccccHHHHHHHccccccccccEEEEEcccccEEEEEcccHEcccHHHHHHHHHHHcccccccccccccEEEEEEccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccEEEEEEcccc
malpmldsaldvdkLSYEIFSILENkflfgydepnklslhhqtkskfntkqvngKVRILSidgagstdGILAAKSLAHLESFIRrksgnpdahisdyfdvvagsgAGGILAALLFtrgkdsnpmfsaegALNFIVGNrrrlfrsssggllrrcFKASRVEKLLRKTfgdltlkdtlkpvlitcydlstcapflFSRADalemdgydfkmrdvclatsanptvtgavemrsvdqrtkivgvdgciamnnptASAITHVLnnkqefpfcngvEDLVVVSLgngesdsrtgsnhcllpstfvriagdgasDMVDQAVSMAFtqrgtsnyariqtngivskkqGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKmvestnldkLELFAGELIKEQErrktsilptvvlkhtiiptprtssattlstlsssc
malpmldsaldvDKLSYEIFSILENKFLFGYDEPNKLSLHHQtkskfntkqvngKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLfrsssggllrrcfkasrvekllrktfgdltlkdtlKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATsanptvtgavemrsvdqRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDsrtgsnhcllPSTFVRIAGDGASDMVDQAVSMAFtqrgtsnyariqtngivskkqgsvekalksndkseILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELikeqerrktsilptvvlkhtiiptprtssattlstlsssc
MALPMLDSALDVDKLSYEIFSILENKFLFGYDEPNKLSLHHQTKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVagsgaggilaallFTRGKDSNPMFSAEGALNFIVgnrrrlfrsssggllrrCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTIIPTPRtssattlstlsssC
********ALDVDKLSYEIFSILENKFLFGYDEPNKLSLHH*****FNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGN*********NHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQT**********************ILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTII******************
************DKLSYEIFSILENKFLFGYDEPN*********************RILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGE**********************************S******
MALPMLDSALDVDKLSYEIFSILENKFLFGYDEPNKLSLHHQTKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGN********SNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTIIPTPRT*************
*****LDSALDVDKLSYEIFSILENKFLFGYDEPNKLSLHHQ*KSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKT*******************************
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MALPMLDSALDVDKLSYEIFSILENKFLFGYDEPNKLSLHHQTKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTIIPTPRTSSATTLSTLSSSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.729 0.816 0.257 6e-24
Q3YJT4375 Patatin-1-Kuras 2 OS=Sola N/A no 0.685 0.792 0.249 9e-21
Q2MY54387 Patatin group J-1 OS=Sola N/A no 0.688 0.770 0.25 9e-21
Q41487386 Patatin-16 OS=Solanum tub N/A no 0.683 0.766 0.249 1e-20
Q3YJT3374 Patatin-2-Kuras 1 OS=Sola N/A no 0.692 0.802 0.256 1e-20
Q2MY40387 Patatin-11 OS=Solanum tub N/A no 0.681 0.762 0.249 2e-20
Q2MY60387 Patatin-02 OS=Solanum tub N/A no 0.685 0.767 0.246 2e-20
Q2MY50387 Patatin-01 OS=Solanum tub N/A no 0.685 0.767 0.246 2e-20
P15477386 Patatin-B2 OS=Solanum tub N/A no 0.685 0.769 0.253 4e-20
Q2MY56387 Patatin group D-2 OS=Sola N/A no 0.688 0.770 0.246 4e-20
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 167/353 (47%), Gaps = 37/353 (10%)

Query: 56  VRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLF 115
           V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+ G+  GG+L A++ 
Sbjct: 29  VTVLSIDGGG-VKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMIT 87

Query: 116 TRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDT 175
           T  +++ P  +A   + F   +   +F SS+G      +    + ++L++  G+  +   
Sbjct: 88  TPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQA 147

Query: 176 LKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTV--TGAVEMRSVD- 232
           L  V I+ +D+ T  P +F++++  +    D KM D+C +T+A PT          +++ 
Sbjct: 148 LTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFATNTING 207

Query: 233 QRTKIVGVDGCIA-MNNPTASAITHVLNNKQEFPFCNGVEDL-----VVVSLGNG----- 281
            + +   VDG +A + +P   +++      QE P    +  L     +++SLG G     
Sbjct: 208 DKYEFNLVDGAVATVADPALLSVSVATRRAQEDPAFASIRSLNYKKMLLLSLGTGTTSEF 267

Query: 282 ------ESDSRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQ-RGTSNYARIQTNGI 334
                 E  ++ G+   +L     ++    +S M D  +S  F      +NY R+Q N +
Sbjct: 268 DKTHTAEETAKWGALQWML--VIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENAL 325

Query: 335 VSKKQGSVEKALKSNDKS-EILIAVEEMLSEK--------TYESVLFQGKKMV 378
                G+  KA  +++ + E+L  V E L +K        TYE  L +  K++
Sbjct: 326 T----GTTTKADDASEANMELLAQVGENLLKKPVSKDNPETYEEALKRFAKLL 374
Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q3YJT4|PT1K2_SOLTU Patatin-1-Kuras 2 OS=Solanum tuberosum GN=pat1-k2 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY54|PATJ1_SOLTU Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q41487|PAT16_SOLTU Patatin-16 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q3YJT3|PT2K1_SOLTU Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY40|PAT11_SOLTU Patatin-11 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY60|PAT02_SOLTU Patatin-02 OS=Solanum tuberosum GN=StPat14K07.03 PE=2 SV=1 Back     alignment and function description
>sp|Q2MY50|PAT01_SOLTU Patatin-01 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P15477|PATB2_SOLTU Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY56|PATD2_SOLTU Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
224120324438 predicted protein [Populus trichocarpa] 0.965 0.954 0.695 1e-165
449434206447 PREDICTED: patatin group A-3-like [Cucum 0.972 0.941 0.671 1e-160
224136644438 predicted protein [Populus trichocarpa] 0.937 0.926 0.688 1e-157
224136640438 predicted protein [Populus trichocarpa] 0.937 0.926 0.686 1e-157
225444211427 PREDICTED: patatin group A-3 [Vitis vini 0.960 0.974 0.662 1e-155
356555857436 PREDICTED: uncharacterized protein LOC10 0.942 0.935 0.639 1e-144
356533005434 PREDICTED: uncharacterized protein LOC10 0.939 0.937 0.646 1e-140
255574505416 Patatin B2 precursor, putative [Ricinus 0.914 0.951 0.661 1e-139
449506769362 PREDICTED: patatin group A-3-like [Cucum 0.759 0.908 0.707 1e-129
296089232417 unnamed protein product [Vitis vinifera] 0.806 0.836 0.531 1e-110
>gi|224120324|ref|XP_002318301.1| predicted protein [Populus trichocarpa] gi|222858974|gb|EEE96521.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/433 (69%), Positives = 352/433 (81%), Gaps = 15/433 (3%)

Query: 7   DSALDVDKLSYEIFSILENKFLFG-YDEP------NKLSLHHQTKSKFNTKQVNG-KVRI 58
           DS+ DVDKL+YEIFSILENKFLFG YD+P      +++ +  Q K    TKQ NG KVRI
Sbjct: 12  DSSFDVDKLTYEIFSILENKFLFGGYDDPKLSKNTHQVPIQEQLKP---TKQFNGGKVRI 68

Query: 59  LSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRG 118
           LSIDG G+T+GILAAKSL +LES +RRKSGNP+A +SDYFDVVAGSG+GG+LAALLFTRG
Sbjct: 69  LSIDGGGATNGILAAKSLTYLESCLRRKSGNPNASVSDYFDVVAGSGSGGVLAALLFTRG 128

Query: 119 KDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKP 178
           K+  PMF+AE ALNF+V   +++ RS   G+  + F +++ EK+  KTFG+LTLKDT+K 
Sbjct: 129 KNGRPMFTAEEALNFLVKINKKMNRSQ--GVFGKLFGSAKAEKVFAKTFGELTLKDTIKS 186

Query: 179 VLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMRSVDQRTKIV 238
            LI CYDLST APFLFSRADALEMDGYDFKM DVCLATSA+PT+ GAV+MRSVD+RTKIV
Sbjct: 187 ALIPCYDLSTHAPFLFSRADALEMDGYDFKMSDVCLATSADPTMVGAVDMRSVDKRTKIV 246

Query: 239 GVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESDSRTGSNHCLLPSTF 298
            +DG IAMNNPTA+AITHVLNNKQEFP CNGVEDL+VVSLGNGESD     N    P+ F
Sbjct: 247 AIDGGIAMNNPTAAAITHVLNNKQEFPLCNGVEDLLVVSLGNGESDFGY-QNQNSTPARF 305

Query: 299 VRIAGDGASDMVDQAVSMAFTQRGTSNYARIQTNGIVSKKQGSVEKALKSNDKSEILIAV 358
           VRIAG+GASDMVDQAVSMAF    TSNY RIQ NGI++KK G  +K++KSN K+++L   
Sbjct: 306 VRIAGEGASDMVDQAVSMAFGNCRTSNYVRIQANGIIAKKHGIADKSMKSNKKADLLAMT 365

Query: 359 EEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSILPTVVLKHTIIPTP 418
            EML++K  ESVLF+GKK+VESTN DKLE F GELIKEQERRKTSILPTVVLK    P+P
Sbjct: 366 AEMLAQKNVESVLFEGKKIVESTNFDKLETFTGELIKEQERRKTSILPTVVLKQN-SPSP 424

Query: 419 RTSSATTLSTLSS 431
           RTSSATTLSTLSS
Sbjct: 425 RTSSATTLSTLSS 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449434206|ref|XP_004134887.1| PREDICTED: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224136644|ref|XP_002322380.1| predicted protein [Populus trichocarpa] gi|222869376|gb|EEF06507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224136640|ref|XP_002322379.1| predicted protein [Populus trichocarpa] gi|222869375|gb|EEF06506.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444211|ref|XP_002276337.1| PREDICTED: patatin group A-3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555857|ref|XP_003546246.1| PREDICTED: uncharacterized protein LOC100802299 [Glycine max] Back     alignment and taxonomy information
>gi|356533005|ref|XP_003535059.1| PREDICTED: uncharacterized protein LOC100800037 [Glycine max] Back     alignment and taxonomy information
>gi|255574505|ref|XP_002528164.1| Patatin B2 precursor, putative [Ricinus communis] gi|223532421|gb|EEF34215.1| Patatin B2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449506769|ref|XP_004162843.1| PREDICTED: patatin group A-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296089232|emb|CBI39004.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2056088499 PLP6 "PATATIN-like protein 6" 0.833 0.723 0.462 6.4e-87
TAIR|locus:2082702488 pPLAIIIbeta "patatin-related p 0.935 0.829 0.446 2.1e-84
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.778 0.877 0.390 3.4e-54
TAIR|locus:2115065428 PLP4 "AT4G37050" [Arabidopsis 0.295 0.299 0.299 1.2e-12
TAIR|locus:2114995414 PLP1 [Arabidopsis thaliana (ta 0.501 0.524 0.270 2.6e-12
TAIR|locus:2066286407 PLA2A "phospholipase A 2A" [Ar 0.771 0.820 0.238 3.2e-12
TAIR|locus:2158337401 AT5G43590 [Arabidopsis thalian 0.521 0.563 0.239 4.5e-10
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.117 0.143 0.346 2.3e-05
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.117 0.143 0.346 2.3e-05
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 771 (276.5 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
 Identities = 177/383 (46%), Positives = 231/383 (60%)

Query:    50 KQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXX 109
             K   GKV +LSID  G   GI+  K+LA+LE  ++ KSG+P+A I+DYFDV         
Sbjct:   102 KNQRGKVCVLSIDSGGMR-GIIPGKALAYLEHALKSKSGDPNARIADYFDVASGSGIGGI 160

Query:   110 XXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKA---------SRVE 160
                  F     + P+F AE    F+                    K          S++E
Sbjct:   161 FTAMLFASSDGNRPIFKAEDTWRFLAMKGKSFYNKSPPGILNRVMKTGSGGSGGSGSKLE 220

Query:   161 KLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANP 220
             K ++++F +LTLKDTLKPVLI CYDL++ APFLFSRADALE DGYDFK+ +VC AT A P
Sbjct:   221 KAMKESFEELTLKDTLKPVLIPCYDLTSSAPFLFSRADALETDGYDFKLWEVCRATWAEP 280

Query:   221 TVTGAVEMRSVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGN 280
              V   VEMRSVD +T+ V VDG +AM+NPTA+AITHVL+NKQEFPF  GVEDL+V+SLG 
Sbjct:   281 GVFEPVEMRSVDGKTRCVAVDGGLAMSNPTAAAITHVLHNKQEFPFVRGVEDLLVLSLGT 340

Query:   281 GE-------SDS--RTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRGTSNYARIQT 331
             G+        D   +  + H   P+  VRI+ DGA+D VDQAVSMAF Q   SNY RIQ 
Sbjct:   341 GQLVDVKYDCDKVMKWKAKHWARPA--VRISADGAADTVDQAVSMAFGQCRRSNYVRIQA 398

Query:   332 NGI-VSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFA 390
             NG      + +++     ++ + ++   EEML +K  ESVLF GKK+ E +N +KL+  A
Sbjct:   399 NGSSFGPCKPNIDTDASPSNVNMLVGVAEEMLKQKNAESVLFGGKKINEESNYEKLDWLA 458

Query:   391 GELIKEQERRKTSILPTVVLKHT 413
             GEL+ E +RR   I PTV  K +
Sbjct:   459 GELVLEHQRRSCRIAPTVAFKQS 481
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0045735 "nutrient reservoir activity" evidence=ISS
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00121277
SubName- Full=Putative uncharacterized protein; (439 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_scaffold_40000248
hypothetical protein (163 aa)
  •     0.470

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 3e-59
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 4e-50
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 3e-41
COG3621394 COG3621, COG3621, Patatin [General function predic 1e-19
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 2e-19
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 5e-19
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 5e-14
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 2e-09
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 6e-09
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 4e-06
cd07210221 cd07210, Pat_hypo_W_succinogenes_WS1459_like, Hypo 7e-04
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 0.001
>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information 
 Score =  196 bits (499), Expect = 3e-59
 Identities = 103/292 (35%), Positives = 144/292 (49%), Gaps = 20/292 (6%)

Query: 57  RILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFT 116
           RILSIDG G   GI+ A  L  +E  +++K+GNP+A ++DYFD+VAG+  GGIL  L   
Sbjct: 1   RILSIDGGG-IRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLC 59

Query: 117 RGKDSNPMFSAEGALNFIVGNRRRLFR-------SSSGGLLRRCFKASRVEKLLRKTFGD 169
             +   P FSA+ ALNF +     +F+        S GG L   +    +E++L + FGD
Sbjct: 60  PNESGRPKFSAKEALNFYLERGNYIFKKKIWNKIKSRGGFLNEKYSHKPLEEVLLEYFGD 119

Query: 170 LTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEMR 229
             L + LKP LIT YD+   +P  F    A++ +  DF +RDV  ATSA PT      + 
Sbjct: 120 TKLSELLKPCLITSYDIERRSPHFFKSHTAIKNEQRDFYVRDVARATSAAPTYFEPARIH 179

Query: 230 SVDQRTKIVGVDGCIAMNNPTASAITHVLNNKQEFPFCNGVEDLVVVSLGNGESD----- 284
           S+    K   +DG +  NNPT  A       K E P     +D++++SLG G++      
Sbjct: 180 SLTG-EKYTLIDGGVFANNPTLCAYAEARKLKFEQPGKPTAKDMIILSLGTGKNKKSYTY 238

Query: 285 ---SRTGSNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQRG-TSNYARIQTN 332
                 G      P   + I  DGAS  VD  +   F   G    Y RIQ  
Sbjct: 239 EKVKDWGLLGWAKP--LIDIMMDGASQTVDYQLKQIFDAEGDQQQYLRIQPE 288

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Length = 329
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132849 cd07210, Pat_hypo_W_succinogenes_WS1459_like, Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 100.0
COG3621394 Patatin [General function prediction only] 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 99.98
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 99.97
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 99.97
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 99.97
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 99.97
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.96
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.95
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.95
PRK10279300 hypothetical protein; Provisional 99.95
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.92
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.91
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.91
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.91
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.9
cd07219382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.89
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.89
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.88
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.87
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.87
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.86
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.85
cd07223405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.82
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.76
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.75
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.73
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.73
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.72
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.72
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.7
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.24
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.17
KOG3773354 consensus Adiponutrin and related vesicular transp 98.9
cd00147438 cPLA2_like Cytosolic phospholipase A2, catalytic d 96.78
cd07202430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 91.77
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 90.69
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 89.43
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 86.66
cd07200505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 81.57
cd07203 552 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA 80.75
smart00022549 PLAc Cytoplasmic phospholipase A2, catalytic subun 80.06
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information 
Probab=100.00  E-value=2e-65  Score=517.92  Aligned_cols=308  Identities=31%  Similarity=0.494  Sum_probs=266.3

Q ss_pred             CCceEEEEEeCCCchhHHHHHHHHHHHHHHhhhhcCCCCCCcCCccCEEEecchHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 013966           53 NGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALN  132 (433)
Q Consensus        53 ~~~~~iLslDGGgG~RGi~~~~iL~~Le~~l~~~~G~p~~ri~d~FD~IaGTStGgliAa~L~~~~~~~rp~~s~~~~~~  132 (433)
                      ++++|||||||| |+||+++++||++||++++++.| |+++|+++||+|+|||||||||++|+++..++||+|+++|+.+
T Consensus         1 ~~~~rILslDGG-GiRGi~~a~iL~~lE~~l~~~~g-~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~   78 (349)
T cd07214           1 GKFITVLSIDGG-GIRGIIPATILEFLEGKLQELDG-PDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQ   78 (349)
T ss_pred             CCceEEEEECCC-chhhHHHHHHHHHHHHHHHHhcC-CCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHH
Confidence            468999999999 99999999999999999998877 7889999999999999999999999998878999999999999


Q ss_pred             HHHhhccccccCCC------c----ccccCCCChHHHHHHHHHHcCCccccccCCCEEEEEeecCCCceEEEecCCcccc
Q 013966          133 FIVGNRRRLFRSSS------G----GLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEM  202 (433)
Q Consensus       133 ~y~~~~~~iF~~~~------~----~l~~~~~~~~~L~~~l~~~fg~~~L~d~~~~v~I~a~dl~~~~p~iF~~~~~~~~  202 (433)
                      +|.+++++||...+      +    .++.++|+++.|+++|+++||+.+|.|+.++|+|||||+.+++|++|+++++..+
T Consensus        79 ~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~~~~~~~  158 (349)
T cd07214          79 FYLENGPKIFPQSTGQFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKND  158 (349)
T ss_pred             HHHHhhHHhcCCCcccchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeCccccCC
Confidence            99999999996531      1    2345789999999999999999999999999999999999999999999988777


Q ss_pred             CCCCchHHHHHHHhcCCCCCcceEEEeecC--Ccc-ceeeecCcccCCCChHHHHHHHHhcCC-CC---CCC--CCCceE
Q 013966          203 DGYDFKMRDVCLATSANPTVTGAVEMRSVD--QRT-KIVGVDGCIAMNNPTASAITHVLNNKQ-EF---PFC--NGVEDL  273 (433)
Q Consensus       203 ~~~d~~l~da~~ASsAaP~~Fpp~~i~~~d--G~~-~~~~vDGGv~~NNP~~~Ai~ea~~~~~-~~---p~~--~~~~~i  273 (433)
                      ...++++||||+||||+|+||||+++.+.+  |+. .+.||||||.+|||+++|+.|+++... .|   |..  .+.+++
T Consensus       159 ~~~~~~l~da~rASSAaPtyFpp~~i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i  238 (349)
T cd07214         159 KLTNARLADVCISTSAAPTYFPAHYFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKL  238 (349)
T ss_pred             cccCcCHHHHHHHhcccccccCCeEeecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeE
Confidence            778899999999999999999999997532  221 257999999999999999999987432 23   221  246799


Q ss_pred             EEEEcCCCCCCCCC------CCCCCCCc-----hHHHHHHhhhhhhHHHHHHHHHhcc-CCCCcEEEeecCCCCccccch
Q 013966          274 VVVSLGNGESDSRT------GSNHCLLP-----STFVRIAGDGASDMVDQAVSMAFTQ-RGTSNYARIQTNGIVSKKQGS  341 (433)
Q Consensus       274 lVlSLGTG~~~~~~------~~~~~~~~-----~~li~i~~~a~~d~vd~~~s~lf~~-~~~~~Y~Riq~~~~~~~~~~~  341 (433)
                      +|||||||......      -|+..+|.     .+|+++++++++|++|++++++|+. .++++|+|||++.+.+.. .+
T Consensus       239 ~vlSiGTG~~~~~~~~~~~~~wG~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~-~~  317 (349)
T cd07214         239 LVLSLGTGSAEESYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTA-SS  317 (349)
T ss_pred             EEEEecCCCcccccChhhhccCCeeecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcc-cC
Confidence            99999999974321      12333554     7999999999999999999999964 456899999999876632 56


Q ss_pred             hhhhcccccHHHHHHHHHHHhhh
Q 013966          342 VEKALKSNDKSEILIAVEEMLSE  364 (433)
Q Consensus       342 ~D~~~~~n~~~~L~~~~~~~l~~  364 (433)
                      ||+++++| ++.|.++|+++|++
T Consensus       318 ~d~~~~~n-i~~L~~~a~~~l~~  339 (349)
T cd07214         318 VDDATEEN-LEKLVEIGKKLLKK  339 (349)
T ss_pred             cccCCHHH-HHHHHHHHHHHHhC
Confidence            99999998 99999999999987

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 1e-07
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 135/334 (40%), Gaps = 39/334 (11%)
Query: 76  LAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIV 135
           L  LE  ++    N DA ++DYFDV+              T  +++ P  +A+  + F  
Sbjct: 35  LEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXISTPNENNRPFAAAKEIVPFYF 94
Query: 136 XXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFS 195
                             +    + ++L++  G+  +   L  V+I+ +D+ T  P +F+
Sbjct: 95  EHGPQIFNPSGQILGPK-YDGKYLXQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFT 153
Query: 196 RADALEMDGYDFKMRDVCLATSANPTVTGA---VEMRSVDQRTKIVGVDGCIA-MNNPTA 251
           +++       D K  D+  +T+A PT       V   S     +   VDG +A + +P  
Sbjct: 154 KSNLANSPELDAKXYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPAL 213
Query: 252 SAITHVLNNKQEFPFCNGVEDL-----VVVSLGNG------------ESDSRTGSNHCLL 294
            +I+      Q+ P    +  L     +++SLG G            E+ + T  +  L+
Sbjct: 214 LSISVATRLAQKDPAFASIRSLNYKKXLLLSLGTGTTSEFDKTYTAKEAATWTAVHWXLV 273
Query: 295 PSTFVRIAGDGASDM-VDQAVSMAFTQRGT-SNYARIQTNGIVSKKQGSVEKALKSNDKS 352
               ++   D AS    D  +S AF    + +NY R+Q N +      + E    S    
Sbjct: 274 ----IQKXTDAASSYXTDYYLSTAFQALDSKNNYLRVQENALTGT---TTEXDDASEANX 326
Query: 353 EILIAVEEMLSEK--------TYESVLFQGKKMV 378
           E+L+ V E L +K        TYE  L +  K++
Sbjct: 327 ELLVQVGENLLKKPVSEDNPETYEEALKRFAKLL 360

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
1oxw_A373 Patatin; alpha/beta class fold with approximately 2e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  197 bits (501), Expect = 2e-59
 Identities = 86/373 (23%), Positives = 164/373 (43%), Gaps = 31/373 (8%)

Query: 50  KQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGI 109
            Q+   V +LSIDG G   GI+ A  L  LE  ++    N DA ++DYFDV+ G+  GG+
Sbjct: 10  AQLGEMVTVLSIDGGG-IRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGL 68

Query: 110 LAALLFTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGD 169
           L A++ T  +++ P  +A+  + F   +  ++F  S    L   +    + ++L++  G+
Sbjct: 69  LTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQI-LGPKYDGKYLMQVLQEKLGE 127

Query: 170 LTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEM- 228
             +   L  V+I+ +D+ T  P +F++++       D KM D+  +T+A PT        
Sbjct: 128 TRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFV 187

Query: 229 --RSVDQRTKIVGVDGCI-AMNNPTASAITHVLNNKQEFPFCNGV-----EDLVVVSLGN 280
              S     +   VDG +  + +P   +I+      Q+ P    +     + ++++SLG 
Sbjct: 188 TNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGT 247

Query: 281 GESDSRTGSNHCLLPST---------FVRIAGDGASDMVDQAVSMAFTQ-RGTSNYARIQ 330
           G +     +      +T           ++    +S M D  +S AF      +NY R+Q
Sbjct: 248 GTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQ 307

Query: 331 TNGIVSKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFA 390
            N + +     ++ A ++N +  + +  E +L +   E            T  + L+ FA
Sbjct: 308 ENAL-TGTTTEMDDASEANMELLVQVG-ENLLKKPVSEDNPE--------TYEEALKRFA 357

Query: 391 GELIKEQERRKTS 403
             L   ++ R   
Sbjct: 358 KLLSDRKKLRANK 370
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.92
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.88
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 95.54
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=1.1e-65  Score=523.30  Aligned_cols=343  Identities=24%  Similarity=0.393  Sum_probs=290.7

Q ss_pred             cCCCceEEEEEeCCCchhHHHHHHHHHHHHHHhhhhcCCCCCCcCCccCEEEecchHHHHHHHHHcCCCCCCCCCCHHHH
Q 013966           51 QVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGA  130 (433)
Q Consensus        51 ~~~~~~~iLslDGGgG~RGi~~~~iL~~Le~~l~~~~G~p~~ri~d~FD~IaGTStGgliAa~L~~~~~~~rp~~s~~~~  130 (433)
                      +++++.++|||||| |+||+++++||++||+++++++|.++++++++||+|+|||+|||+|++|+++.+.+||+|+++++
T Consensus        11 ~~~~~~~~LsLdGG-G~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el   89 (373)
T 1oxw_A           11 QLGEMVTVLSIDGG-GIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEI   89 (373)
T ss_dssp             -CCSCEEEEEECCC-GGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGH
T ss_pred             CCCCCeEEEEEcCC-cHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHH
Confidence            36778999999999 99999999999999999998888557899999999999999999999999988788999999999


Q ss_pred             HHHHHhhccccccCCCcccccCCCChHHHHHHHHHHcCCccccccCCCEEEEEeecCCCceEEEecCCccccCCCCchHH
Q 013966          131 LNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMR  210 (433)
Q Consensus       131 ~~~y~~~~~~iF~~~~~~l~~~~~~~~~L~~~l~~~fg~~~L~d~~~~v~I~a~dl~~~~p~iF~~~~~~~~~~~d~~l~  210 (433)
                      .++|.++.+++|... ..+..+.|+++.|+++|+++||+.+|.|+.++++|++||+.+++|++|++|+.+.++..+.++|
T Consensus        90 ~~~~~~~~~~iF~~~-~~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~~~~~~~~~~l~  168 (373)
T 1oxw_A           90 VPFYFEHGPQIFNPS-GQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMY  168 (373)
T ss_dssp             HHHHHHHHHHHTCCC-CCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHH
T ss_pred             HHHHHHhhHhhcCCC-CccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCCCCCCccCchHH
Confidence            999999999999764 2345678999999999999999999999999999999999999999999998877777889999


Q ss_pred             HHHHHhcCCCCCcceEEEeecC--Cccc-eeeecCcccC-CCChHHHHHHHHhc---CCCCCCC--CCCceEEEEEcCCC
Q 013966          211 DVCLATSANPTVTGAVEMRSVD--QRTK-IVGVDGCIAM-NNPTASAITHVLNN---KQEFPFC--NGVEDLVVVSLGNG  281 (433)
Q Consensus       211 da~~ASsAaP~~Fpp~~i~~~d--G~~~-~~~vDGGv~~-NNP~~~Ai~ea~~~---~~~~p~~--~~~~~ilVlSLGTG  281 (433)
                      +||+||||+|+||||+++.+.|  |+.+ +.|||||+.+ |||+..|+.|+.+.   ...|+..  .+.++++|||||||
T Consensus       169 ~av~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~~~~~~~~~~~vvSlGTG  248 (373)
T 1oxw_A          169 DISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTG  248 (373)
T ss_dssp             HHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCC
T ss_pred             HHHHHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHHHhccCcccccccccccCceEEEEecCC
Confidence            9999999999999999998655  6532 4899999999 99999999998541   1122111  23567999999999


Q ss_pred             CCCC--CCC-------CCCCCCchHHHHHHhhhhhhHHHHHHHHHhcc-CCCCcEEEeecCCCCccccchhhhhcccccH
Q 013966          282 ESDS--RTG-------SNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQ-RGTSNYARIQTNGIVSKKQGSVEKALKSNDK  351 (433)
Q Consensus       282 ~~~~--~~~-------~~~~~~~~~li~i~~~a~~d~vd~~~s~lf~~-~~~~~Y~Riq~~~~~~~~~~~~D~~~~~n~~  351 (433)
                      ....  ..+       |+..+|..+|+++++++++|++|+|++++|+. .++++|+|||++.+.+. ..+||+++++| +
T Consensus       249 ~~~~~~~~~~~~~~~~wG~~~w~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~-~~~lD~~~~~~-l  326 (373)
T 1oxw_A          249 TTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGT-TTEMDDASEAN-M  326 (373)
T ss_dssp             CBCTTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGG-GGCTTCCCHHH-H
T ss_pred             CCCCcccccChhhhhhhhhHhHHHHHHHHHHHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCCCc-ccccccCCHHH-H
Confidence            8532  111       23345778999999999999999999999975 45689999999655432 36899999998 9


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccccccccccHHHHHHHHHHHHHHHHhhhcCCC
Q 013966          352 SEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTSIL  405 (433)
Q Consensus       352 ~~L~~~~~~~l~~~n~e~~~~~~~~~~~~tN~e~l~~fa~~L~~er~~R~~~~~  405 (433)
                      ++|.++|+++|++ ++..+.       -+||+|+|++||++|++||++|+.+.+
T Consensus       327 ~~L~~~~~~~l~~-~~~~~~-------~~tn~~~l~~~a~~L~~e~~~r~~~~~  372 (373)
T 1oxw_A          327 ELLVQVGENLLKK-PVSEDN-------PETYEEALKRFAKLLSDRKKLRANKAS  372 (373)
T ss_dssp             HHHHHHHHHHHTS-BSSSSC-------CCBHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc-cccccc-------chhHHHHHHHHHHHHHHHhhcccccCC
Confidence            9999999999997 343332       346999999999999999999987653
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 6e-44
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score =  155 bits (391), Expect = 6e-44
 Identities = 90/366 (24%), Positives = 160/366 (43%), Gaps = 31/366 (8%)

Query: 55  KVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALL 114
            V +LSIDG G   GI+ A  L  LE  ++    N DA ++DYFDV+ G+  GG+L A++
Sbjct: 4   MVTVLSIDG-GGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMI 62

Query: 115 FTRGKDSNPMFSAEGALNFIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKD 174
            T  +++ P  +A+  + F   +  ++F   SG +L   +    + ++L++  G+  +  
Sbjct: 63  STPNENNRPFAAAKEIVPFYFEHGPQIFN-PSGQILGPKYDGKYLMQVLQEKLGETRVHQ 121

Query: 175 TLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDVCLATSANPTVTGAVEM---RSV 231
            L  V+I+ +D+ T  P +F++++       D KM D+  +T+A PT           S 
Sbjct: 122 ALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSN 181

Query: 232 DQRTKIVGVDG-CIAMNNPTASAITHVLNNKQEFPFCNGVEDL-----VVVSLGNGESDS 285
               +   VDG    + +P   +I+      Q+ P    +  L     +++SLG G +  
Sbjct: 182 GDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSE 241

Query: 286 RTGSNHCLLPST---------FVRIAGDGASDMVDQAVSMAF-TQRGTSNYARIQTNGIV 335
              +      +T           ++    +S M D  +S AF      +NY R+Q N + 
Sbjct: 242 FDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALT 301

Query: 336 SKKQGSVEKALKSNDKSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIK 395
                + E    S    E+L+ V E L +K       +       T  + L+ FA  L  
Sbjct: 302 GT---TTEMDDASEANMELLVQVGENLLKKPVSEDNPE-------TYEEALKRFAKLLSD 351

Query: 396 EQERRK 401
            ++ R 
Sbjct: 352 RKKLRA 357

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 94.42
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=3.1e-56  Score=446.08  Aligned_cols=336  Identities=24%  Similarity=0.393  Sum_probs=284.7

Q ss_pred             CCceEEEEEeCCCchhHHHHHHHHHHHHHHhhhhcCCCCCCcCCccCEEEecchHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 013966           53 NGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVAGSGAGGILAALLFTRGKDSNPMFSAEGALN  132 (433)
Q Consensus        53 ~~~~~iLslDGGgG~RGi~~~~iL~~Le~~l~~~~G~p~~ri~d~FD~IaGTStGgliAa~L~~~~~~~rp~~s~~~~~~  132 (433)
                      |+.++||||||| |+||+++++||++||+++.+..+.++.+++|+||+|+|||+|||+|++|+.+...+++.+..+++.+
T Consensus         2 ~~~v~iLsldGG-G~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~   80 (360)
T d1oxwa_           2 GEMVTVLSIDGG-GIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP   80 (360)
T ss_dssp             CSCEEEEEECCC-GGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred             CCceEEEEECCC-HHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence            578999999999 9999999999999999998888878899999999999999999999999998877888899999999


Q ss_pred             HHHhhccccccCCCcccccCCCChHHHHHHHHHHcCCccccccCCCEEEEEeecCCCceEEEecCCccccCCCCchHHHH
Q 013966          133 FIVGNRRRLFRSSSGGLLRRCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYDFKMRDV  212 (433)
Q Consensus       133 ~y~~~~~~iF~~~~~~l~~~~~~~~~L~~~l~~~fg~~~L~d~~~~v~I~a~dl~~~~p~iF~~~~~~~~~~~d~~l~da  212 (433)
                      +|......+|... .....+.|+.+.|+++++++||+.++.|..+++.++++++.+++|++|++++...++..+.++|+|
T Consensus        81 ~~~~~~~~~f~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  159 (360)
T d1oxwa_          81 FYFEHGPQIFNPS-GQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDI  159 (360)
T ss_dssp             HHHHHHHHHTCCC-CCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHH
T ss_pred             HHHhhcchhhhcc-ccccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEeccccccCCcccchHHHh
Confidence            9998888888643 234567899999999999999999999999999999999999999999999887777888999999


Q ss_pred             HHHhcCCCCCcceEEEeec---CCccceeeecCcccC-CCChHHHHHHHHhcCCCCCC--------CCCCceEEEEEcCC
Q 013966          213 CLATSANPTVTGAVEMRSV---DQRTKIVGVDGCIAM-NNPTASAITHVLNNKQEFPF--------CNGVEDLVVVSLGN  280 (433)
Q Consensus       213 ~~ASsAaP~~Fpp~~i~~~---dG~~~~~~vDGGv~~-NNP~~~Ai~ea~~~~~~~p~--------~~~~~~ilVlSLGT  280 (433)
                      ++||||+|+||||+++...   ||...+.|+|||+.. |||+.+|+.|+.+   .||.        ..+...++++|+||
T Consensus       160 ~~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~---l~~~~~~~~~~~~~~~~~~~~~s~gt  236 (360)
T d1oxwa_         160 SYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATR---LAQKDPAFASIRSLNYKKMLLLSLGT  236 (360)
T ss_dssp             HHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHH---HTTTCGGGTTSTTCCGGGEEEEEECC
T ss_pred             hhhhhcCCCCCCCEEEecccCCCCceeEEecccchhhccCchHHHHHHHHH---hcccCccccccccCCccceeeecccc
Confidence            9999999999999998753   333346799999976 5899999999865   2331        13456889999999


Q ss_pred             CCCCCCCC---------CCCCCCchHHHHHHhhhhhhHHHHHHHHHhccC-CCCcEEEeecCCCCccccchhhhhccccc
Q 013966          281 GESDSRTG---------SNHCLLPSTFVRIAGDGASDMVDQAVSMAFTQR-GTSNYARIQTNGIVSKKQGSVEKALKSND  350 (433)
Q Consensus       281 G~~~~~~~---------~~~~~~~~~li~i~~~a~~d~vd~~~s~lf~~~-~~~~Y~Riq~~~~~~~~~~~~D~~~~~n~  350 (433)
                      |.......         ++...|..++.+++..+..++++++++.+|+.. ..++|+|||++.+... ...||+.++++ 
T Consensus       237 g~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~-~~~lDd~s~~~-  314 (360)
T d1oxwa_         237 GTTSEFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGT-TTEMDDASEAN-  314 (360)
T ss_dssp             CCBCTTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGG-GGCTTCCCHHH-
T ss_pred             ccccccccccchhhhhhcchHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcEEEEcCCccccc-cccccCCCHHH-
Confidence            98754321         122346678899999999999999999998763 4589999998766442 35799998886 


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhccccccccccHHHHHHHHHHHHHHHHhhhcC
Q 013966          351 KSEILIAVEEMLSEKTYESVLFQGKKMVESTNLDKLELFAGELIKEQERRKTS  403 (433)
Q Consensus       351 ~~~L~~~~~~~l~~~n~e~~~~~~~~~~~~tN~e~l~~fa~~L~~er~~R~~~  403 (433)
                      +++|.++|+++++|...+.        ...||+++|++||++|++||++|+.+
T Consensus       315 l~~l~~~g~~~~~~~~~~~--------~~~~~~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         315 MELLVQVGENLLKKPVSED--------NPETYEEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             HHHHHHHHHHHHTSBSSSS--------CCCBHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999998754322        33579999999999999999999764
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure