Query 013968
Match_columns 433
No_of_seqs 209 out of 1181
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 00:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 2.8E-34 6.1E-39 300.0 16.7 126 2-128 285-410 (545)
2 cd02664 Peptidase_C19H A subfa 100.0 2E-30 4.3E-35 257.9 12.4 124 3-126 154-327 (327)
3 cd02663 Peptidase_C19G A subfa 100.0 3.1E-29 6.7E-34 245.8 14.0 123 2-126 166-300 (300)
4 cd02667 Peptidase_C19K A subfa 100.0 2.8E-29 6E-34 244.1 12.9 121 2-126 130-279 (279)
5 cd02668 Peptidase_C19L A subfa 100.0 4.1E-29 8.8E-34 247.4 13.7 123 3-126 176-324 (324)
6 cd02660 Peptidase_C19D A subfa 100.0 1.3E-28 2.8E-33 241.8 13.9 122 4-126 196-328 (328)
7 cd02659 peptidase_C19C A subfa 100.0 1.7E-28 3.8E-33 241.4 14.2 126 3-129 171-333 (334)
8 cd02661 Peptidase_C19E A subfa 100.0 2.7E-28 5.8E-33 234.7 13.6 123 3-126 182-304 (304)
9 cd02657 Peptidase_C19A A subfa 100.0 6.6E-28 1.4E-32 234.9 13.1 118 4-126 176-305 (305)
10 cd02674 Peptidase_C19R A subfa 99.9 2.5E-27 5.3E-32 220.7 12.7 124 2-126 103-230 (230)
11 cd02671 Peptidase_C19O A subfa 99.9 2.1E-27 4.6E-32 238.6 12.4 117 2-126 199-332 (332)
12 cd02669 Peptidase_C19M A subfa 99.9 3.1E-27 6.7E-32 245.1 11.9 126 1-126 309-440 (440)
13 cd02658 Peptidase_C19B A subfa 99.9 2E-26 4.4E-31 225.4 12.0 111 4-126 195-311 (311)
14 cd02662 Peptidase_C19F A subfa 99.9 3.5E-26 7.7E-31 218.4 11.8 105 1-126 111-240 (240)
15 cd02257 Peptidase_C19 Peptidas 99.9 4.5E-25 9.7E-30 199.7 13.8 125 2-126 115-255 (255)
16 KOG1866 Ubiquitin carboxyl-ter 99.9 2.8E-27 6.1E-32 252.6 -3.1 132 2-134 265-440 (944)
17 cd02673 Peptidase_C19Q A subfa 99.9 2.7E-25 5.8E-30 215.2 10.6 115 3-126 126-245 (245)
18 PF00443 UCH: Ubiquitin carbox 99.9 5.1E-24 1.1E-28 196.8 13.8 117 3-125 142-269 (269)
19 KOG4598 Putative ubiquitin-spe 99.9 1E-25 2.3E-30 239.2 1.1 130 2-132 233-445 (1203)
20 cd02665 Peptidase_C19I A subfa 99.9 1.7E-24 3.6E-29 208.4 9.0 105 9-126 113-228 (228)
21 cd02672 Peptidase_C19P A subfa 99.9 3.4E-24 7.4E-29 210.0 11.2 118 2-126 133-268 (268)
22 cd02670 Peptidase_C19N A subfa 99.9 2.2E-24 4.8E-29 209.1 9.6 106 21-126 95-241 (241)
23 COG5560 UBP12 Ubiquitin C-term 99.9 5.4E-25 1.2E-29 232.6 4.8 126 2-129 694-823 (823)
24 COG5077 Ubiquitin carboxyl-ter 99.9 1.4E-25 3E-30 240.2 -0.3 158 2-177 357-544 (1089)
25 KOG1870 Ubiquitin C-terminal h 99.9 1.7E-23 3.6E-28 232.7 3.8 124 2-129 715-842 (842)
26 KOG1867 Ubiquitin-specific pro 99.9 2.3E-22 5E-27 212.1 7.8 128 2-131 353-487 (492)
27 COG5533 UBP5 Ubiquitin C-termi 99.8 5.4E-21 1.2E-25 189.8 11.1 125 2-128 283-414 (415)
28 KOG1868 Ubiquitin C-terminal h 99.8 3.3E-21 7.1E-26 208.3 7.0 129 2-132 516-650 (653)
29 KOG1864 Ubiquitin-specific pro 99.8 2.5E-19 5.5E-24 192.4 7.8 126 2-128 440-572 (587)
30 KOG1873 Ubiquitin-specific pro 99.7 1.4E-19 3E-24 194.5 -0.9 113 15-128 737-877 (877)
31 KOG0944 Ubiquitin-specific pro 99.7 1.1E-17 2.4E-22 178.5 9.1 125 1-128 487-762 (763)
32 PF13423 UCH_1: Ubiquitin carb 99.6 1.2E-15 2.6E-20 149.8 10.5 105 3-107 180-295 (295)
33 KOG1863 Ubiquitin carboxyl-ter 99.6 3E-16 6.4E-21 179.2 3.3 130 5-135 339-492 (1093)
34 cd02666 Peptidase_C19J A subfa 99.6 4.3E-16 9.3E-21 158.1 2.0 104 21-126 204-343 (343)
35 COG5207 UBP14 Isopeptidase T [ 99.5 1.2E-14 2.6E-19 151.9 7.3 125 3-127 477-748 (749)
36 KOG1872 Ubiquitin-specific pro 99.4 3.8E-14 8.1E-19 147.3 2.9 113 16-128 297-469 (473)
37 KOG1871 Ubiquitin-specific pro 99.3 3.1E-12 6.7E-17 130.8 4.6 121 9-129 287-420 (420)
38 KOG1275 PAB-dependent poly(A) 98.8 1.1E-08 2.3E-13 113.4 8.5 122 4-125 702-860 (1118)
39 KOG2026 Spindle pole body prot 98.5 2.4E-08 5.3E-13 102.5 0.3 109 17-128 327-441 (442)
40 PF10163 EnY2: Transcription f 97.4 0.0009 2E-08 55.9 7.9 70 348-424 16-85 (86)
41 PF15499 Peptidase_C98: Ubiqui 97.0 0.00049 1.1E-08 68.3 3.3 80 6-106 173-252 (275)
42 KOG4479 Transcription factor e 94.8 0.099 2.1E-06 44.0 6.5 63 356-425 25-87 (92)
43 PF05408 Peptidase_C28: Foot-a 75.0 12 0.00027 36.0 7.4 43 85-133 138-180 (193)
44 KOG1887 Ubiquitin carboxyl-ter 50.6 7.3 0.00016 44.6 1.1 104 19-127 676-789 (806)
45 PF03292 Pox_P4B: Poxvirus P4B 35.4 57 0.0012 36.7 5.0 77 26-114 479-577 (666)
46 KOG3556 Familial cylindromatos 31.7 8.9 0.00019 42.2 -1.8 32 19-50 516-549 (724)
47 COG3478 Predicted nucleic-acid 23.6 65 0.0014 26.3 2.2 33 4-36 5-39 (68)
48 PF02099 Josephin: Josephin; 23.4 1.2E+02 0.0025 28.3 4.2 32 72-109 99-130 (157)
49 PF03765 CRAL_TRIO_N: CRAL/TRI 22.6 1.1E+02 0.0025 22.7 3.3 34 343-376 3-42 (55)
50 PF01473 CW_binding_1: Putativ 21.6 98 0.0021 18.6 2.2 14 91-105 3-16 (19)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=300.04 Aligned_cols=126 Identities=41% Similarity=0.746 Sum_probs=120.6
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeC
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGF 81 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~ 81 (433)
+.|+|++|++++.|.|+++|.++|+||+||||||++.+.+||+++|.||+.|||.+||..+. +....|.|||||||.|.
T Consensus 285 n~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~-e~s~~Y~LYavlVH~g~ 363 (545)
T KOG1865|consen 285 NAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPN-EGSTVYKLYAVLVHLGT 363 (545)
T ss_pred cccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCC-CCCceEEEEEEEEeccc
Confidence 68999999999999999999999999999999999988999999999999999999999554 44579999999999999
Q ss_pred CCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEc
Q 013968 82 SPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 128 (433)
Q Consensus 82 s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~ 128 (433)
+.++|||+||||...|.||.|||+.|+.++.+.|++..||||||.|.
T Consensus 364 ~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 364 SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred cccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 99999999999999999999999999999999999999999999997
No 2
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2e-30 Score=257.92 Aligned_cols=124 Identities=34% Similarity=0.595 Sum_probs=109.9
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccC----CccceeeeecceeecCcccccC----------------
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKA---------------- 62 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~----~Ki~~~VeFP~~LDLs~f~~~~---------------- 62 (433)
+|+|++|++.+.+.|+..|.++|+||+|||+||.|+.. .|+.+.|.||..|||..++...
T Consensus 154 ~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~ 233 (327)
T cd02664 154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDD 233 (327)
T ss_pred ceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccccccccccccccccccc
Confidence 49999999999999999999999999999999997653 6999999999999999886411
Q ss_pred --CCCCCCceEEEEEEEEeeCCCCCCeEEEEEEcCC---------------------CCEEEEcCCcceeechhhhcC--
Q 013968 63 --SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI---------------------GRWYCCNDSYVSVSTLQEVLS-- 117 (433)
Q Consensus 63 --~~~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~~---------------------~~Wy~FNDs~Vt~vs~eeVls-- 117 (433)
.......|+|+|||+|.|.++++|||+||+|... +.||+|||+.|+++++++|..
T Consensus 234 ~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~ 313 (327)
T cd02664 234 GELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVT 313 (327)
T ss_pred ccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhh
Confidence 1123568999999999997689999999999864 789999999999999999986
Q ss_pred -----CCcEEEEEE
Q 013968 118 -----EKVYILFFI 126 (433)
Q Consensus 118 -----e~AYmLFY~ 126 (433)
.+||||||+
T Consensus 314 ~~~~~~~aYlLfY~ 327 (327)
T cd02664 314 SRFPKDTPYILFYE 327 (327)
T ss_pred CCCCCCCEEEEEeC
Confidence 899999995
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=3.1e-29 Score=245.81 Aligned_cols=123 Identities=30% Similarity=0.441 Sum_probs=109.7
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIV 77 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIv 77 (433)
++|+|++|+.++.|.|+..|.++|+||+|||+||.++. ..|++++|.||..|+|..+.... ......|+|+|||+
T Consensus 166 ~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~-~~~~~~Y~L~~vi~ 244 (300)
T cd02663 166 NKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDA-ENPDRLYELVAVVV 244 (300)
T ss_pred CcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccccc-CCCCeEEEEEEEEE
Confidence 36899999999999999999999999999999999763 36999999999999998875432 23346899999999
Q ss_pred EeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhc--------CCCcEEEEEE
Q 013968 78 HSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVL--------SEKVYILFFI 126 (433)
Q Consensus 78 HsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVl--------se~AYmLFY~ 126 (433)
|.|.++++|||++|+|. .+.||+|||+.|++++.++|. ..+||||||+
T Consensus 245 H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 245 HIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99966899999999999 899999999999999999986 5889999995
No 4
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.8e-29 Score=244.11 Aligned_cols=121 Identities=38% Similarity=0.660 Sum_probs=108.4
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccC---CccceeeeecceeecCcccccCC----CCCCCceEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFG---GKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFG 74 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~---~Ki~~~VeFP~~LDLs~f~~~~~----~~~~~kYeL~g 74 (433)
++|.|++|++ |.|+..|.++|++|+|||+||.++.. .|++..|.||..|||.+|+.... ......|+|+|
T Consensus 130 ~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~ 206 (279)
T cd02667 130 NKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYG 206 (279)
T ss_pred CcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEEE
Confidence 3589999987 89999999999999999999998743 79999999999999999988621 23357899999
Q ss_pred EEEEeeCCCCCCeEEEEEEcC----------------------CCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 75 TIVHSGFSPDSGHYYAYIKDA----------------------IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 75 VIvHsG~s~~sGHYvayIR~~----------------------~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
||+|.|. .++|||++|+|.. .+.||+|||+.|++++.++|++.+||||||+
T Consensus 207 vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 207 VVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred EEEEeCC-CCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 9999995 6999999999974 5799999999999999999999999999995
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=4.1e-29 Score=247.41 Aligned_cols=123 Identities=30% Similarity=0.487 Sum_probs=109.3
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
+|.|++|++++.+.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+.... .....|+|+|||+|
T Consensus 176 ~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~Y~L~~vI~H 254 (324)
T cd02668 176 QYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESD-EGSYVYELSGVLIH 254 (324)
T ss_pred cccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhccccc-CCCcEEEEEEEEEE
Confidence 4899999999999999999999999999999999764 369999999999999999986543 23468999999999
Q ss_pred eeCCCCCCeEEEEEEcCC-CCEEEEcCCcceeechhhhc---------------------CCCcEEEEEE
Q 013968 79 SGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVL---------------------SEKVYILFFI 126 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~~-~~Wy~FNDs~Vt~vs~eeVl---------------------se~AYmLFY~ 126 (433)
.|.++++|||+||+|+.. ++||+|||+.|++++.+.+. +..||||||+
T Consensus 255 ~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 255 QGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 997689999999999864 89999999999999888762 3689999996
No 6
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.3e-28 Score=241.77 Aligned_cols=122 Identities=35% Similarity=0.641 Sum_probs=111.5
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccC--------CCCCCCceEE
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKA--------SQDPQPEYKL 72 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~--------~~~~~~kYeL 72 (433)
|.|++|+.++.+.++..|.+||++|+|||+||.++. ..|+.+.|.||..|||.+|+... ......+|+|
T Consensus 196 ~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L 275 (328)
T cd02660 196 YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDL 275 (328)
T ss_pred ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEE
Confidence 689999999999999999999999999999999764 37999999999999999998852 2234578999
Q ss_pred EEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 73 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 73 ~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
+|||+|.| +.++|||++|+|..+++||+|||+.|+++++++|+...||||||.
T Consensus 276 ~avi~H~G-~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 276 FAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred EEEEEeec-cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 99999999 588999999999977999999999999999999999999999994
No 7
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.7e-28 Score=241.44 Aligned_cols=126 Identities=35% Similarity=0.573 Sum_probs=112.1
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCC----------CCCCC
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS----------QDPQP 68 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~----------~~~~~ 68 (433)
+|.|++|++.+.+.++..|.++|++|+|||+||.+++ ..|++..|.||..|||.+|+.... .....
T Consensus 171 ~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~ 250 (334)
T cd02659 171 KYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESY 250 (334)
T ss_pred cEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCe
Confidence 5999999999999999999999999999999999753 369999999999999999987642 22356
Q ss_pred ceEEEEEEEEeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhc----------------------CCCcEEEEE
Q 013968 69 EYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVL----------------------SEKVYILFF 125 (433)
Q Consensus 69 kYeL~gVIvHsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVl----------------------se~AYmLFY 125 (433)
.|+|+|||+|.| +.++|||++|+|.. ++.||+|||+.|++++.++|+ +.+||||||
T Consensus 251 ~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y 329 (334)
T cd02659 251 IYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFY 329 (334)
T ss_pred eEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEE
Confidence 899999999999 68999999999985 689999999999999999995 246999999
Q ss_pred EEcC
Q 013968 126 IRAN 129 (433)
Q Consensus 126 ~R~s 129 (433)
+|.+
T Consensus 330 ~~~~ 333 (334)
T cd02659 330 ERKS 333 (334)
T ss_pred EEeC
Confidence 9975
No 8
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=2.7e-28 Score=234.72 Aligned_cols=123 Identities=50% Similarity=0.881 Sum_probs=113.8
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCC
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS 82 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s 82 (433)
.|.|++|++.+.+.++..|.++|++|+|||+||.++...|+.+.|.||..|||.+|+.... .....|+|+|||+|.|.+
T Consensus 182 ~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~-~~~~~Y~L~~vi~H~G~~ 260 (304)
T cd02661 182 KYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQPN-DGPLKYKLYAVLVHSGFS 260 (304)
T ss_pred CeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccccCC-CCCceeeEEEEEEECCCC
Confidence 3899999999999999999999999999999999876789999999999999999987642 345789999999999976
Q ss_pred CCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 83 PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 83 ~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
.++|||++|+|..+++||+|||+.|+++++++|+.+.||||||.
T Consensus 261 ~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 261 PHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 69999999999988999999999999999999999999999994
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=6.6e-28 Score=234.90 Aligned_cols=118 Identities=29% Similarity=0.378 Sum_probs=107.2
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEe
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHS 79 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHs 79 (433)
..|+.|+....+.|+..|.++|++|+|||+||.++. ..|+++.|+||..|||.+|+.. ...|+|+|||+|.
T Consensus 176 ~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~-----~~~Y~L~~vI~H~ 250 (305)
T cd02657 176 KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCTP-----SGYYELVAVITHQ 250 (305)
T ss_pred hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccCC-----CCcEEEEEEEEec
Confidence 469999988899999999999999999999999753 2599999999999999999872 4589999999999
Q ss_pred eCCCCCCeEEEEEEcCC-CCEEEEcCCcceeechhhhcC-------CCcEEEEEE
Q 013968 80 GFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLS-------EKVYILFFI 126 (433)
Q Consensus 80 G~s~~sGHYvayIR~~~-~~Wy~FNDs~Vt~vs~eeVls-------e~AYmLFY~ 126 (433)
|.++++|||++|+|... +.||.|||+.|++++.++|.. ..||||||+
T Consensus 251 G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 251 GRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 97689999999999976 899999999999999999974 699999996
No 10
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=2.5e-27 Score=220.68 Aligned_cols=124 Identities=31% Similarity=0.500 Sum_probs=111.3
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
+.+.|++|+..+.+.++..|.++|++|+|||+||.++. ..|+.+.|.|| +.||+.+|+.........+|+|+|||+|
T Consensus 103 ~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H 182 (230)
T cd02674 103 NAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNH 182 (230)
T ss_pred CceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEe
Confidence 35889999999999999999999999999999999763 57999999999 5799999865444445678999999999
Q ss_pred eeCCCCCCeEEEEEEcCC-CCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 79 SGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~~-~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
.|. ..+|||++|+|... +.||+|||+.|++++.+++....||||||+
T Consensus 183 ~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 183 YGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred eCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 995 59999999999975 899999999999999999989999999995
No 11
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.1e-27 Score=238.55 Aligned_cols=117 Identities=27% Similarity=0.501 Sum_probs=104.2
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--------CCccceeeeecceeecCcccccCCCCCCCceEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLF 73 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--------~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~ 73 (433)
++|+|++|+.++.|.|+..|.++|+||+|||+||.++. ..|+++.|.||..|+|.+|.... ....|+|+
T Consensus 199 n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~---~~~~Y~L~ 275 (332)
T cd02671 199 DKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKP---KNDVYRLF 275 (332)
T ss_pred CCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCCC---CCCeEEEE
Confidence 46999999999999999999999999999999999642 36999999999999999876543 35689999
Q ss_pred EEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcC---------CCcEEEEEE
Q 013968 74 GTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS---------EKVYILFFI 126 (433)
Q Consensus 74 gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVls---------e~AYmLFY~ 126 (433)
|||+|.|.+.++|||+|||| ||+|||+.|++++++++.. .+||||||+
T Consensus 276 ~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 276 AVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 99999996689999999999 9999999999999888752 689999995
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=3.1e-27 Score=245.09 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=112.4
Q ss_pred CCCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeecce-eecCcccccCC--CCCCCceEEEEE
Q 013968 1 MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEV-LVLSSFMCKAS--QDPQPEYKLFGT 75 (433)
Q Consensus 1 Iddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP~~-LDLs~f~~~~~--~~~~~kYeL~gV 75 (433)
|++|.|+.|...+.+.|++.|.+||+||+||||||.++. ..|+++.|.||.. |||.+|+.... ......|+|+||
T Consensus 309 L~ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~av 388 (440)
T cd02669 309 LKKYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVAN 388 (440)
T ss_pred HHhcCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEE
Confidence 467999999999999999999999999999999999753 4799999999986 89999987532 234579999999
Q ss_pred EEEeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 76 IVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 76 IvHsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
|+|.|..+++|||++|+|+. .++||+|||+.|+++++++|+...||||||+
T Consensus 389 I~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 389 IVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 99999533999999999975 6899999999999999999999999999995
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2e-26 Score=225.41 Aligned_cols=111 Identities=34% Similarity=0.493 Sum_probs=100.8
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceecc--c-CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEee
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGI--F-GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSG 80 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d--~-~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG 80 (433)
++|++|++++.+.|+..|.+||+||+|||+||.++ + ..|+...|.||..| ....|+|+|||+|.|
T Consensus 195 ~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H~G 262 (311)
T cd02658 195 DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISHKG 262 (311)
T ss_pred ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEccC
Confidence 67999999999999999999999999999999974 2 36999999999776 235799999999999
Q ss_pred CCCCCCeEEEEEEcC---CCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 81 FSPDSGHYYAYIKDA---IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 81 ~s~~sGHYvayIR~~---~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
.+.++|||++|+|.. .++||+|||+.|++++..+++.+.||||||+
T Consensus 263 ~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 263 TSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 768999999999996 2899999999999999999999999999995
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=3.5e-26 Score=218.45 Aligned_cols=105 Identities=32% Similarity=0.484 Sum_probs=95.0
Q ss_pred CCCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccCCCCCCCceEEEEEEE
Q 013968 1 MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIV 77 (433)
Q Consensus 1 Iddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIv 77 (433)
|++|.|++| +..|.++|+||+|||+||.++. ..|+++.|.||..| ....|+|+|||+
T Consensus 111 l~~~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~ 170 (240)
T cd02662 111 IDDYKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVV 170 (240)
T ss_pred ccCcCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc------------CCceEEEEEEEE
Confidence 468999999 6789999999999999999765 26999999999887 246899999999
Q ss_pred EeeCCCCCCeEEEEEEcC---------------------CCCEEEEcCCcceeechhhh-cCCCcEEEEEE
Q 013968 78 HSGFSPDSGHYYAYIKDA---------------------IGRWYCCNDSYVSVSTLQEV-LSEKVYILFFI 126 (433)
Q Consensus 78 HsG~s~~sGHYvayIR~~---------------------~~~Wy~FNDs~Vt~vs~eeV-lse~AYmLFY~ 126 (433)
|.| +.++|||++|+|.+ .+.||+|||+.|+++++++| ...+||||||+
T Consensus 171 H~G-~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 171 HYG-SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred Eec-cCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 999 46999999999986 38999999999999999999 88999999995
No 15
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=4.5e-25 Score=199.65 Aligned_cols=125 Identities=38% Similarity=0.639 Sum_probs=110.2
Q ss_pred CCcccCCCC--CceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCccccc-----CCCCCCCceE
Q 013968 2 KDLCLFSCK--KLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCK-----ASQDPQPEYK 71 (433)
Q Consensus 2 ddy~CekCk--k~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~-----~~~~~~~kYe 71 (433)
+++.|..|+ ..+.+.++..|.++|++|+|+|+||.++. ..|+...|.||..|++..++.. ........|+
T Consensus 115 ~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~ 194 (255)
T cd02257 115 EGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYE 194 (255)
T ss_pred CCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEE
Confidence 567899998 68889999999999999999999999754 5799999999999999988752 1223457899
Q ss_pred EEEEEEEeeCCCCCCeEEEEEEcCC-CCEEEEcCCcceeechhhh-----cCCCcEEEEEE
Q 013968 72 LFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEV-----LSEKVYILFFI 126 (433)
Q Consensus 72 L~gVIvHsG~s~~sGHYvayIR~~~-~~Wy~FNDs~Vt~vs~eeV-----lse~AYmLFY~ 126 (433)
|+|||+|.|.+..+|||++|+|... ++||+|||..|++++.+++ ....||||||+
T Consensus 195 L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 195 LVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred EEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999999997669999999999976 8999999999999999999 46899999995
No 16
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-27 Score=252.60 Aligned_cols=132 Identities=30% Similarity=0.541 Sum_probs=115.3
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccC----CccceeeeecceeecCcccccCC--------------
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS-------------- 63 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~----~Ki~~~VeFP~~LDLs~f~~~~~-------------- 63 (433)
+-|+|++|++++...|+++|++||+||+||||||.|||. .|.++.++||..|||.||+..+-
T Consensus 265 nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~ 344 (944)
T KOG1866|consen 265 NAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQL 344 (944)
T ss_pred chhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCccc
Confidence 469999999999999999999999999999999999984 69999999999999999976541
Q ss_pred --CCCCCceEEEEEEEEeeCCCCCCeEEEEEEcC----CCCEEEEcCCcceeechhhhcC--------------------
Q 013968 64 --QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA----IGRWYCCNDSYVSVSTLQEVLS-------------------- 117 (433)
Q Consensus 64 --~~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~----~~~Wy~FNDs~Vt~vs~eeVls-------------------- 117 (433)
.....+|+|+|||+|+|. +.+||||+||+.. +++||+|||-.|++++..++..
T Consensus 345 e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~ 423 (944)
T KOG1866|consen 345 EQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRW 423 (944)
T ss_pred ccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHh
Confidence 112468999999999995 9999999999875 4789999999999999887643
Q ss_pred CCcEEEEEEEcCCCCCC
Q 013968 118 EKVYILFFIRANQRPVS 134 (433)
Q Consensus 118 e~AYmLFY~R~s~~~~~ 134 (433)
=+||||||+|.+..+..
T Consensus 424 WNAYmlFYer~~d~p~~ 440 (944)
T KOG1866|consen 424 WNAYMLFYERMDDIPTD 440 (944)
T ss_pred hhhHHHHHHHhcCCCcc
Confidence 18999999999876643
No 17
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=2.7e-25 Score=215.20 Aligned_cols=115 Identities=27% Similarity=0.441 Sum_probs=95.0
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCC
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS 82 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s 82 (433)
+|.|++|+.. .+.|+..|.+||+||+|||+||.+.. +....+.+ ..++|.+|+. ....|+|+|||+|.|.+
T Consensus 126 e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~ 196 (245)
T cd02673 126 EKDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG-----TDAKYSLVAVICHLGES 196 (245)
T ss_pred CccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC-----CCceEEEEEEEEECCCC
Confidence 5789999875 78899999999999999999997543 22222222 3456777764 24679999999999976
Q ss_pred CCCCeEEEEEEcC--CCCEEEEcCCcceeechhhhc---CCCcEEEEEE
Q 013968 83 PDSGHYYAYIKDA--IGRWYCCNDSYVSVSTLQEVL---SEKVYILFFI 126 (433)
Q Consensus 83 ~~sGHYvayIR~~--~~~Wy~FNDs~Vt~vs~eeVl---se~AYmLFY~ 126 (433)
.++|||+||+|.. .++||+|||+.|+++++++|+ .++||||||+
T Consensus 197 ~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 197 PYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred CCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 8999999999986 478999999999999999998 5799999995
No 18
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.91 E-value=5.1e-24 Score=196.78 Aligned_cols=117 Identities=43% Similarity=0.707 Sum_probs=97.8
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeec-ceeecCcccccCCCC--CCCceEEEEE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFE-EVLVLSSFMCKASQD--PQPEYKLFGT 75 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP-~~LDLs~f~~~~~~~--~~~kYeL~gV 75 (433)
.+.|..|+.. ...|.++|++|+|+|+||.++. ..|+...|.|| ..|||.+|+...... ....|+|+||
T Consensus 142 ~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~av 216 (269)
T PF00443_consen 142 SIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAV 216 (269)
T ss_dssp EEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEE
T ss_pred cccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhh
Confidence 3569999866 7789999999999999996543 36999999999 799999998875421 3579999999
Q ss_pred EEEeeCCCCCCeEEEEEEcCC-CCEEEEcCCcceeechhhhcC---CCcEEEEE
Q 013968 76 IVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLS---EKVYILFF 125 (433)
Q Consensus 76 IvHsG~s~~sGHYvayIR~~~-~~Wy~FNDs~Vt~vs~eeVls---e~AYmLFY 125 (433)
|+|.| +.++|||+||+|+.. +.||+|||+.|++++.++|.. .+||||||
T Consensus 217 i~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 217 IVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred hcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99999 799999999999875 469999999999999999998 99999999
No 19
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-25 Score=239.18 Aligned_cols=130 Identities=35% Similarity=0.614 Sum_probs=115.5
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccC---------------
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKA--------------- 62 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~--------------- 62 (433)
++|.|++|++++.|.|.+.|..+|-+|+||||||.+++ +.|+++++.||.+|||..|+...
T Consensus 233 nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~ 312 (1203)
T KOG4598|consen 233 NQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKN 312 (1203)
T ss_pred cHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccc
Confidence 58999999999999999999999999999999999765 58999999999999999987652
Q ss_pred --------------------------------------------------CCCCCCceEEEEEEEEeeCCCCCCeEEEEE
Q 013968 63 --------------------------------------------------SQDPQPEYKLFGTIVHSGFSPDSGHYYAYI 92 (433)
Q Consensus 63 --------------------------------------------------~~~~~~kYeL~gVIvHsG~s~~sGHYvayI 92 (433)
....++.|+|++|++|+| ++.+|||+|||
T Consensus 313 ~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayi 391 (1203)
T KOG4598|consen 313 KSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYI 391 (1203)
T ss_pred cccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeee
Confidence 001256899999999999 79999999999
Q ss_pred EcC-CCCEEEEcCCcceeechhhhcC-------------CCcEEEEEEEcCCCC
Q 013968 93 KDA-IGRWYCCNDSYVSVSTLQEVLS-------------EKVYILFFIRANQRP 132 (433)
Q Consensus 93 R~~-~~~Wy~FNDs~Vt~vs~eeVls-------------e~AYmLFY~R~s~~~ 132 (433)
|+. +++||+|||.+|+-++..+|.. .+||||+|||.++..
T Consensus 392 k~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~kr 445 (1203)
T KOG4598|consen 392 KNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKR 445 (1203)
T ss_pred cccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCccc
Confidence 987 5799999999999999999963 689999999988644
No 20
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=1.7e-24 Score=208.42 Aligned_cols=105 Identities=30% Similarity=0.521 Sum_probs=91.0
Q ss_pred CCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCCCCCC
Q 013968 9 CKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 86 (433)
Q Consensus 9 Ckk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s~~sG 86 (433)
|...+.+.++..|.+||+||+|||+||.++. ..|+++.|+||..| ....|+|+|||+|.| .+++|
T Consensus 113 ~~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l------------~~~~Y~L~aVi~H~G-~~~~G 179 (228)
T cd02665 113 SDHSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII------------QQVPYELHAVLVHEG-QANAG 179 (228)
T ss_pred ccchhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc------------CCceeEEEEEEEecC-CCCCC
Confidence 3334557788889999999999999999865 57999999999877 135899999999999 49999
Q ss_pred eEEEEEEcC-CCCEEEEcCCcceeechhhhcC--------CCcEEEEEE
Q 013968 87 HYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS--------EKVYILFFI 126 (433)
Q Consensus 87 HYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls--------e~AYmLFY~ 126 (433)
||++|+|+. .+.||+|||+.|++++.++|.. .+||||||.
T Consensus 180 HY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 180 HYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred EEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999999875 7899999999999999999974 479999994
No 21
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=3.4e-24 Score=209.97 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=101.2
Q ss_pred CCcccCCCCCceeEEEEEEEcccCC----eeEEEEeceeccc---------CCccceeeeecceeecCcccccCCCCCCC
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPN----ILVIQLKRFEGIF---------GGKIDKAIAFEEVLVLSSFMCKASQDPQP 68 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~----VLiIhLkRF~~d~---------~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~ 68 (433)
+++.|++|++++.+.|+..|++||+ ||+|||+||.+.. ..|+...|.||..+++..+...+. ....
T Consensus 133 ~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~-~~~~ 211 (268)
T cd02672 133 TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQ-ESIY 211 (268)
T ss_pred ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccCC-CCCc
Confidence 5789999999999999999999999 9999999998532 247788999998877766554432 3356
Q ss_pred ceEEEEEEEEeeCCCCCCeEEEEEEcC-----CCCEEEEcCCcceeechhhhcCCCcEEEEEE
Q 013968 69 EYKLFGTIVHSGFSPDSGHYYAYIKDA-----IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126 (433)
Q Consensus 69 kYeL~gVIvHsG~s~~sGHYvayIR~~-----~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~ 126 (433)
.|+|+|||+|.|.+..+|||+||||.. .++||+|||..|+++++ .||||||+
T Consensus 212 ~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 212 KYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred eEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 899999999999656899999999985 47899999999999988 99999995
No 22
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=2.2e-24 Score=209.09 Aligned_cols=106 Identities=24% Similarity=0.412 Sum_probs=90.5
Q ss_pred EcccCCeeEEEEeceeccc--CCccceeeeecceeecCcccccCC---------------------CCCCCceEEEEEEE
Q 013968 21 ILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEVLVLSSFMCKAS---------------------QDPQPEYKLFGTIV 77 (433)
Q Consensus 21 I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP~~LDLs~f~~~~~---------------------~~~~~kYeL~gVIv 77 (433)
|.++|++|+||||||.+.. ..|+++.|.||..|||.+|+.... ....++|+|+|||+
T Consensus 95 i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~ 174 (241)
T cd02670 95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVC 174 (241)
T ss_pred hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEE
Confidence 8899999999999999754 479999999999999999986541 12246899999999
Q ss_pred EeeCCCCCCeEEEEEEcCC------------CCEEEEcCCcceeechh------hhcCCCcEEEEEE
Q 013968 78 HSGFSPDSGHYYAYIKDAI------------GRWYCCNDSYVSVSTLQ------EVLSEKVYILFFI 126 (433)
Q Consensus 78 HsG~s~~sGHYvayIR~~~------------~~Wy~FNDs~Vt~vs~e------eVlse~AYmLFY~ 126 (433)
|.|.+.++|||+||+|... +.||+|||..|+.+... .+..++||||||+
T Consensus 175 H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 175 HRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred eCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 9997789999999999874 68999999988876432 4567999999996
No 23
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.4e-25 Score=232.56 Aligned_cols=126 Identities=31% Similarity=0.555 Sum_probs=113.4
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
|-++|+.|+.+..|.|++.|+++|.||+||||||++.. +.||.+-|+|| ..|||+.|...- .++.-.|+|+||=.|
T Consensus 694 DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~-~~p~liydlyavDNH 772 (823)
T COG5560 694 DSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMV-DDPRLIYDLYAVDNH 772 (823)
T ss_pred ccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEee-cCcceEEEeeecccc
Confidence 45899999999999999999999999999999999654 57999999999 779998875543 334478999999999
Q ss_pred eeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcC
Q 013968 79 SGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 129 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s 129 (433)
.| ...+|||+||+|+. +++||+|||++|+++.+++..+..||+|||+|++
T Consensus 773 yg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 773 YG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cc-ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 99 69999999999997 4699999999999999999999999999999974
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-25 Score=240.21 Aligned_cols=158 Identities=29% Similarity=0.437 Sum_probs=128.6
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccC----CccceeeeecceeecCcccccCCCC---CCCceEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKASQD---PQPEYKLFG 74 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~----~Ki~~~VeFP~~LDLs~f~~~~~~~---~~~kYeL~g 74 (433)
+.|.|++- .+|.|.|...|..|||||.|+||||.|++. .|||++++||.++||.+|+...... ..+.|.|+|
T Consensus 357 N~Y~ae~~-GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~Lyg 435 (1089)
T COG5077 357 NRYNAEKH-GLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYG 435 (1089)
T ss_pred cccccccc-cchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEE
Confidence 45677774 479999999999999999999999998764 6999999999999999999887533 357899999
Q ss_pred EEEEeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcC----------------------CCcEEEEEEEcCCC
Q 013968 75 TIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS----------------------EKVYILFFIRANQR 131 (433)
Q Consensus 75 VIvHsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls----------------------e~AYmLFY~R~s~~ 131 (433)
|+||+| +.+.|||||++|.. +|+||+|||++|+.++..+|+. .+||||+|-|++..
T Consensus 436 VlVHsG-Dl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ 514 (1089)
T COG5077 436 VLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSML 514 (1089)
T ss_pred EEEecc-ccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHH
Confidence 999999 69999999999975 7899999999999999999974 27899999999887
Q ss_pred CCCCCCCCCCCCcccCCCCcccccccCCCccccccCCCCchhhhcC
Q 013968 132 PVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSR 177 (433)
Q Consensus 132 ~~~~~~~~~s~~v~~~~~~~~is~~~~~~~~lk~~~~ke~~e~e~k 177 (433)
.....+.. +.++ |.|+++++..+..+.|.+
T Consensus 515 ddLlnPV~----------a~di------P~hv~e~l~eei~~~e~r 544 (1089)
T COG5077 515 DDLLNPVA----------AVDI------PPHVEEVLSEEIDKTEVR 544 (1089)
T ss_pred HhhhCchh----------hhhC------CHHHHHhhCHHHHHHHHH
Confidence 66553321 1233 555566666655555544
No 25
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-23 Score=232.74 Aligned_cols=124 Identities=35% Similarity=0.572 Sum_probs=114.7
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecc--cCCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d--~~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
+.++|++|++++.|.|++.+++||+||+||||||+|. +..|+.+.|+|| ..||+++|+..... ..|+|+||.+|
T Consensus 715 ~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~---~~Y~l~av~nH 791 (842)
T KOG1870|consen 715 DRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ---VLYDLYAVGNH 791 (842)
T ss_pred ccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc---ceeeeeeeecc
Confidence 4689999999999999999999999999999999974 357999999999 77999999987653 79999999999
Q ss_pred eeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcC
Q 013968 79 SGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 129 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s 129 (433)
+|. ..+|||+||+|+. ++.||.|||+.|.+++++++.++.||+|||+|++
T Consensus 792 yG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 792 YGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred cCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 994 9999999999994 7899999999999999999999999999999974
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-22 Score=212.10 Aligned_cols=128 Identities=34% Similarity=0.606 Sum_probs=114.5
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccCC----CCCCCceEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFG 74 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~~----~~~~~kYeL~g 74 (433)
.++.|..|+.++.+.|++.|.++|.+|.+||+||.+.. ..|+.+.|.||..|+|.+|+..+. +.+.+.|+|.|
T Consensus 353 ~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~A 432 (492)
T KOG1867|consen 353 SKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRA 432 (492)
T ss_pred cccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEE
Confidence 46889999999999999999999999999999998532 239999999999999999988621 22467999999
Q ss_pred EEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCC
Q 013968 75 TIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR 131 (433)
Q Consensus 75 VIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~ 131 (433)
||+|.|. .++|||+||+|. .+.||+|||+.|+.+++++|++..||+|||.+....
T Consensus 433 VV~H~G~-~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 433 VVVHHGT-VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred EEEeccC-CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 9999995 999999999999 788999999999999999999999999999986543
No 27
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.4e-21 Score=189.81 Aligned_cols=125 Identities=27% Similarity=0.467 Sum_probs=96.7
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceec--ccCCccceee----eecceeecCcccccCCCCCCCceEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAI----AFEEVLVLSSFMCKASQDPQPEYKLFGT 75 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~--d~~~Ki~~~V----eFP~~LDLs~f~~~~~~~~~~kYeL~gV 75 (433)
|++.|++|++++.++|++.|.+||.+|||||+||.- +.+.|++++- .||......+....+..-.+.+|.|+||
T Consensus 283 d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 283 DAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGV 362 (415)
T ss_pred ccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEE
Confidence 678999999999999999999999999999999983 2233443322 2222222222222233345679999999
Q ss_pred EEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhc-CCCcEEEEEEEc
Q 013968 76 IVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVL-SEKVYILFFIRA 128 (433)
Q Consensus 76 IvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVl-se~AYmLFY~R~ 128 (433)
|||.| +.++|||+++++. ++.|+.|||+.|++++...-. ..++|||||.|.
T Consensus 363 ~Ch~G-~L~gGHY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 363 VCHNG-TLNGGHYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred Eeecc-eecCceeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999 6999999999998 689999999999998765544 468999999985
No 28
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.3e-21 Score=208.27 Aligned_cols=129 Identities=33% Similarity=0.518 Sum_probs=110.4
Q ss_pred CCcccCCCCCceeEE--EEEEEcccCCeeEEEEeceecc--cCCccceeeeec-ceeecCcccccCCCCCCCceEEEEEE
Q 013968 2 KDLCLFSCKKLVSAR--KQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTI 76 (433)
Q Consensus 2 ddy~CekCkk~~~A~--Kr~~I~kLP~VLiIhLkRF~~d--~~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVI 76 (433)
+.+.|++|+...... |+..|++||++|+|||+||.++ +..|...-|.|| ..+++.++...... ....|+|+|||
T Consensus 516 ~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aVv 594 (653)
T KOG1868|consen 516 EAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAVV 594 (653)
T ss_pred cccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEEE
Confidence 348999999988885 9999999999999999999987 678999999999 55677665444332 23469999999
Q ss_pred EEeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCCC
Q 013968 77 VHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 132 (433)
Q Consensus 77 vHsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~~ 132 (433)
+|.| +.++|||+|||+.. .+.||.|||+.|+++...++....||||||.|.....
T Consensus 595 ~H~G-tl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 595 NHSG-TLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred eccC-cccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 9999 79999999999775 5789999999999999999988999999999976543
No 29
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-19 Score=192.37 Aligned_cols=126 Identities=26% Similarity=0.404 Sum_probs=108.6
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIV 77 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIv 77 (433)
++|+|++|...++|++++.+.++|.+|+||||||.++. ..|+...|.||..|.+......... +...|.|+||||
T Consensus 440 nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~-~~~~Y~L~avVv 518 (587)
T KOG1864|consen 440 NKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNN-PDRKYDLVAVVV 518 (587)
T ss_pred CcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccccC-ccceeeEEEEEE
Confidence 57999999999999999999999999999999999753 3689999999998888775554432 136899999999
Q ss_pred EeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcC---CCcEEEEEEEc
Q 013968 78 HSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS---EKVYILFFIRA 128 (433)
Q Consensus 78 HsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVls---e~AYmLFY~R~ 128 (433)
|.|.+++.|||+||+|...-.|++|||..|+.++.++|.. ...|+++|...
T Consensus 519 H~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 519 HLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred eccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEE
Confidence 9999999999999999966669999999999999999874 56677777654
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-19 Score=194.50 Aligned_cols=113 Identities=37% Similarity=0.621 Sum_probs=98.6
Q ss_pred EEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccCCC----CCCCceEEEEEEEEeeCCCCCCe
Q 013968 15 ARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQ----DPQPEYKLFGTIVHSGFSPDSGH 87 (433)
Q Consensus 15 A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~~~----~~~~kYeL~gVIvHsG~s~~sGH 87 (433)
|.|++.|..+||||+|||+||..+. ..|.+.++.|++.+||.+|+.-.-. .....|+|+|||.|+| +...||
T Consensus 737 akk~~li~~aPpVltihlKrf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~gh 815 (877)
T KOG1873|consen 737 AKKKVLINKAPPVLTIHLKRFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGH 815 (877)
T ss_pred hheeeecccCCceeeehHhhhhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCc
Confidence 5788899999999999999997543 3689999999999999999765421 1346899999999999 699999
Q ss_pred EEEEEEcC---------------------CCCEEEEcCCcceeechhhhcCCCcEEEEEEEc
Q 013968 88 YYAYIKDA---------------------IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 128 (433)
Q Consensus 88 YvayIR~~---------------------~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~ 128 (433)
|++|+|.. .++||...|+.|.++++++|+...||||||+|.
T Consensus 816 yvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 816 YVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred chhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 99999852 378999999999999999999999999999984
No 31
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-17 Score=178.48 Aligned_cols=125 Identities=33% Similarity=0.493 Sum_probs=106.8
Q ss_pred CCCcccCCCCCceeEEEEEEEcccCCeeEEEEeceec-ccC-CccceeeeecceeecCcccccC----------------
Q 013968 1 MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEG-IFG-GKIDKAIAFEEVLVLSSFMCKA---------------- 62 (433)
Q Consensus 1 Iddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~-d~~-~Ki~~~VeFP~~LDLs~f~~~~---------------- 62 (433)
+++|.|..|+.+..|.|...|..||.+|+||+.||.+ +|. .|+...|++|+.||++.|...+
T Consensus 487 ~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~ 566 (763)
T KOG0944|consen 487 VDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETS 566 (763)
T ss_pred chhhhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccC
Confidence 3689999999999999999999999999999999997 343 7999999999999999885532
Q ss_pred --------------------------------------------------------------------------------
Q 013968 63 -------------------------------------------------------------------------------- 62 (433)
Q Consensus 63 -------------------------------------------------------------------------------- 62 (433)
T Consensus 567 ~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smG 646 (763)
T KOG0944|consen 567 EFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMG 646 (763)
T ss_pred ccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeec
Confidence
Q ss_pred -----------------------------------------------------CCCCCCceEEEEEEEEeeCCCCCCeEE
Q 013968 63 -----------------------------------------------------SQDPQPEYKLFGTIVHSGFSPDSGHYY 89 (433)
Q Consensus 63 -----------------------------------------------------~~~~~~kYeL~gVIvHsG~s~~sGHYv 89 (433)
..+.+.+|+|.|+|.|.|.++++|||+
T Consensus 647 f~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV 726 (763)
T KOG0944|consen 647 FSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYV 726 (763)
T ss_pred CcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceE
Confidence 001245899999999999999999999
Q ss_pred EEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEc
Q 013968 90 AYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 128 (433)
Q Consensus 90 ayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~ 128 (433)
||||. .|+|+.|||++|- .-++-.+..+||+||+|.
T Consensus 727 ~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 727 CHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI 762 (763)
T ss_pred EEEee-cCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence 99999 5889999999997 233334789999999995
No 32
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.63 E-value=1.2e-15 Score=149.80 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=91.6
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceecc--cCCccceeeeecceeecCcccccCC------CCCCCceEEEE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFEEVLVLSSFMCKAS------QDPQPEYKLFG 74 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d--~~~Ki~~~VeFP~~LDLs~f~~~~~------~~~~~kYeL~g 74 (433)
...|++|++.+.+..+..|.+||+||.|.++|+... |..|....+.||..+++..++..+. ....++|+|.|
T Consensus 180 ~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~ 259 (295)
T PF13423_consen 180 RAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRS 259 (295)
T ss_pred cccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEE
Confidence 457999999999999999999999999999999743 5678899999999999999986653 23457999999
Q ss_pred EEEEeeCCCCCCeEEEEEEcC---CCCEEEEcCCcc
Q 013968 75 TIVHSGFSPDSGHYYAYIKDA---IGRWYCCNDSYV 107 (433)
Q Consensus 75 VIvHsG~s~~sGHYvayIR~~---~~~Wy~FNDs~V 107 (433)
+|+|.|.+..+||||+|||.. +.+||+|||..|
T Consensus 260 ~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 260 MVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999888999999999986 369999999876
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3e-16 Score=179.18 Aligned_cols=130 Identities=32% Similarity=0.528 Sum_probs=111.2
Q ss_pred ccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCccccc--CCC-CCCCceEEEEEEE
Q 013968 5 CLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCK--ASQ-DPQPEYKLFGTIV 77 (433)
Q Consensus 5 ~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~--~~~-~~~~kYeL~gVIv 77 (433)
+|..|...+.|.+...|..||+||.|+|+||.|+. ..|+++.++||..|+|.+|+.. ... ...+.|.|+||++
T Consensus 339 ~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~v 418 (1093)
T KOG1863|consen 339 YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLV 418 (1093)
T ss_pred ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhc
Confidence 69999999999999999999999999999999864 3699999999999999999774 111 1225999999999
Q ss_pred EeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcC----------------CCcEEEEEEEcCCCCCCC
Q 013968 78 HSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS----------------EKVYILFFIRANQRPVSA 135 (433)
Q Consensus 78 HsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls----------------e~AYmLFY~R~s~~~~~~ 135 (433)
|.| ..++|||++|++.. .++|++|||..|+.++..+++. ..||||+|.|.+......
T Consensus 419 h~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~~ 492 (1093)
T KOG1863|consen 419 HSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKIL 492 (1093)
T ss_pred ccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhhh
Confidence 987 69999999999965 6899999999999999888763 138999999988755443
No 34
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.58 E-value=4.3e-16 Score=158.10 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=83.4
Q ss_pred EcccCCeeEEEEeceecc--cCCccceeeeecceeecCcccccCC---------------------------CCCCCceE
Q 013968 21 ILQSPNILVIQLKRFEGI--FGGKIDKAIAFEEVLVLSSFMCKAS---------------------------QDPQPEYK 71 (433)
Q Consensus 21 I~kLP~VLiIhLkRF~~d--~~~Ki~~~VeFP~~LDLs~f~~~~~---------------------------~~~~~kYe 71 (433)
|.+||+||.|||+ +.+. ...++.++++||...+..+++.... ......|+
T Consensus 204 ~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~ 282 (343)
T cd02666 204 LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYR 282 (343)
T ss_pred hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceE
Confidence 8899999999999 4321 2356788888887777666543311 11357899
Q ss_pred EEEEEEEeeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcC------CCcEEEEEE
Q 013968 72 LFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS------EKVYILFFI 126 (433)
Q Consensus 72 L~gVIvHsG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls------e~AYmLFY~ 126 (433)
|+|||+|.| +.++|||++|+|+. ++.||+|||..|++++.++++. .+||||||.
T Consensus 283 L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 283 LHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred EEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 999999999 57999999999986 4789999999999999999985 589999994
No 35
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=151.92 Aligned_cols=125 Identities=28% Similarity=0.448 Sum_probs=103.4
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceecc-c-CCccceeeeec--ceeecCcccccC----------------
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGI-F-GGKIDKAIAFE--EVLVLSSFMCKA---------------- 62 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d-~-~~Ki~~~VeFP--~~LDLs~f~~~~---------------- 62 (433)
.|.|+.|+.+..|.++..|..||++|||+..||.+. | ..|+..++.+. ..++++.|++..
T Consensus 477 E~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t 556 (749)
T COG5207 477 EWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFT 556 (749)
T ss_pred eeehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccC
Confidence 488999999999999999999999999999999853 2 35777777775 457777776651
Q ss_pred --------------------------------------------------------------------------------
Q 013968 63 -------------------------------------------------------------------------------- 62 (433)
Q Consensus 63 -------------------------------------------------------------------------------- 62 (433)
T Consensus 557 ~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n 636 (749)
T COG5207 557 DNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPN 636 (749)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHH
Confidence
Q ss_pred ---------------------C-C----------------------CCCCceEEEEEEEEeeCCCCCCeEEEEEEcCC--
Q 013968 63 ---------------------S-Q----------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-- 96 (433)
Q Consensus 63 ---------------------~-~----------------------~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~~-- 96 (433)
. + .+...|.|.|||+|.|.++++|||++|||...
T Consensus 637 ~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~ 716 (749)
T COG5207 637 LCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKD 716 (749)
T ss_pred HHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCc
Confidence 0 0 01235999999999999999999999999853
Q ss_pred -CCEEEEcCCcceeechhhhcCCCcEEEEEEE
Q 013968 97 -GRWYCCNDSYVSVSTLQEVLSEKVYILFFIR 127 (433)
Q Consensus 97 -~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R 127 (433)
-+|++|||+.+..++--++++.+.||+||.|
T Consensus 717 K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 717 KWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred ceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 3799999999999888888899999999998
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.8e-14 Score=147.27 Aligned_cols=113 Identities=28% Similarity=0.363 Sum_probs=96.6
Q ss_pred EEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCC----------------------------
Q 013968 16 RKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS---------------------------- 63 (433)
Q Consensus 16 ~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~---------------------------- 63 (433)
.|-+.|.+||.+|+|+.-||.|.. ..|+-..|.||..||...+|++..
T Consensus 297 ~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~ 376 (473)
T KOG1872|consen 297 QKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVK 376 (473)
T ss_pred HHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhccccc
Confidence 366778899999999999998643 358888999999999998887640
Q ss_pred --------------------CCC-CCceEEEEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcC-----
Q 013968 64 --------------------QDP-QPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS----- 117 (433)
Q Consensus 64 --------------------~~~-~~kYeL~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVls----- 117 (433)
... ...|+|+|||-|.|++..+|||++|+|..++.|++|||..|+.+..+.+.+
T Consensus 377 ~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsggg 456 (473)
T KOG1872|consen 377 GAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGG 456 (473)
T ss_pred CcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCC
Confidence 000 246999999999999999999999999999999999999999999999975
Q ss_pred --CCcEEEEEEEc
Q 013968 118 --EKVYILFFIRA 128 (433)
Q Consensus 118 --e~AYmLFY~R~ 128 (433)
..||||+|.-+
T Consensus 457 d~~~ayvllyk~~ 469 (473)
T KOG1872|consen 457 DWHSAYVLLYKAR 469 (473)
T ss_pred ccchhhheeeccc
Confidence 58999999754
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.1e-12 Score=130.75 Aligned_cols=121 Identities=24% Similarity=0.388 Sum_probs=100.9
Q ss_pred CCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccC-----CCCCCCceEEEEEEEEee
Q 013968 9 CKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKA-----SQDPQPEYKLFGTIVHSG 80 (433)
Q Consensus 9 Ckk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~-----~~~~~~kYeL~gVIvHsG 80 (433)
-+..+.+.+++.+.+||++|++||+||.|.. -.|+.+.++||-.|.+..-+-.. .......|.|.+|+.|.|
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtg 366 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTG 366 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecc
Confidence 5667889999999999999999999999752 26899999999888776543321 112245799999999999
Q ss_pred CCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcC----CCcEEEEEEEcC
Q 013968 81 FSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS----EKVYILFFIRAN 129 (433)
Q Consensus 81 ~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls----e~AYmLFY~R~s 129 (433)
.++.+|||..-+-+. .+.|+.+||..|..+..++|+. .+||+|+|++.+
T Consensus 367 tsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 367 TSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred cccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 999999999988765 4789999999999999999985 589999999853
No 38
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=1.1e-08 Score=113.42 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=97.9
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceec---c-cC--CccceeeeecceeecCccccc----------CC----
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEG---I-FG--GKIDKAIAFEEVLVLSSFMCK----------AS---- 63 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~---d-~~--~Ki~~~VeFP~~LDLs~f~~~----------~~---- 63 (433)
-.|+.|.+.+....+..+..||.+|.|...-+.. + |. .|.-..|.+|.++-|...-.. ..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~ 781 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLP 781 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCc
Confidence 4599999999999999999999999999988752 2 22 356778889988776543111 01
Q ss_pred ---CCCCCceEEEEEEEEeeCCCCCCeEEEEEEcC---------CCCEEEEcCCcceeechhhhcC-----CCcEEEEE
Q 013968 64 ---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---------IGRWYCCNDSYVSVSTLQEVLS-----EKVYILFF 125 (433)
Q Consensus 64 ---~~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~---------~~~Wy~FNDs~Vt~vs~eeVls-----e~AYmLFY 125 (433)
...-++|+|.|+|+|.|.+-+.+|++++||.. +.+||.|||..|.+++++|++. +.+-||+|
T Consensus 782 ~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 782 DYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred cccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 11136899999999999878999999999963 2589999999999999999984 78999999
No 39
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=98.50 E-value=2.4e-08 Score=102.46 Aligned_cols=109 Identities=18% Similarity=0.383 Sum_probs=90.7
Q ss_pred EEEEEcccCCeeEEEEeceec--ccCCccceeeeec-ceeecCcccccCC--CCCCCceEEEEEEEEeeCCCCCCeEEEE
Q 013968 17 KQMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKAS--QDPQPEYKLFGTIVHSGFSPDSGHYYAY 91 (433)
Q Consensus 17 Kr~~I~kLP~VLiIhLkRF~~--d~~~Ki~~~VeFP-~~LDLs~f~~~~~--~~~~~kYeL~gVIvHsG~s~~sGHYvay 91 (433)
++..+.++|++||+|++||.- .+..|+.+-++|| ..+++.++..... ......|.|.|-++|- ..-|||..+
T Consensus 327 ~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riq 403 (442)
T KOG2026|consen 327 MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQ 403 (442)
T ss_pred hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEE
Confidence 788999999999999999973 3468999999999 6677766644332 1122579999999996 577999999
Q ss_pred EEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEc
Q 013968 92 IKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 128 (433)
Q Consensus 92 IR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~ 128 (433)
|++. .+.||.++|-.|++...+-|.-..+||.+|++.
T Consensus 404 i~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 404 IYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred EEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 9886 578999999999999999999999999999874
No 40
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=97.36 E-value=0.0009 Score=55.87 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhc
Q 013968 348 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFS 424 (433)
Q Consensus 348 ~~~l~~~a~~~l~~~~~~~~~~~~m~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~ 424 (433)
++-|++.-..-|..|||.|+|...-|..=|. ......+.++|=..+.--| +..||+++|+.|+.+++.|-
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~A----r~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPKA----RAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHHH----HHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHh
Confidence 3444444556789999999999988774333 2234457777766666655 45799999999999999985
No 41
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.00 E-value=0.00049 Score=68.27 Aligned_cols=80 Identities=20% Similarity=0.394 Sum_probs=52.1
Q ss_pred cCCCCCceeEEEEEEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCCCCC
Q 013968 6 LFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDS 85 (433)
Q Consensus 6 CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s~~s 85 (433)
|.+|+. ....+++.+.++|+|+++|+- .. .|.. ||..|.- .-....|++.+||-+.- +-
T Consensus 173 Cn~C~~-ksQ~rkMvlekv~~vfmLHFV---eG----------LP~n-dl~~ysF---~feg~~Y~Vt~VIQY~~---~~ 231 (275)
T PF15499_consen 173 CNSCNS-KSQRRKMVLEKVPPVFMLHFV---EG----------LPHN-DLQHYSF---HFEGCLYQVTSVIQYQA---NL 231 (275)
T ss_pred CcccCC-hHHhHhhhhhcCchhhhhhhh---cc----------CCcc-CCCccce---eecCeeEEEEEEEEEec---cC
Confidence 677764 334556677777777777751 11 1111 1221111 11245799999998864 46
Q ss_pred CeEEEEEEcCCCCEEEEcCCc
Q 013968 86 GHYYAYIKDAIGRWYCCNDSY 106 (433)
Q Consensus 86 GHYvayIR~~~~~Wy~FNDs~ 106 (433)
-|+++||++.+|.|..|||-+
T Consensus 232 ~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 232 NHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred ceeEEEEEcCCCCeEeeccCC
Confidence 899999999999999999965
No 42
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=94.83 E-value=0.099 Score=43.95 Aligned_cols=63 Identities=21% Similarity=0.422 Sum_probs=49.5
Q ss_pred hhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhcc
Q 013968 356 SSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSD 425 (433)
Q Consensus 356 ~~~l~~~~~~~~~~~~m~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~ 425 (433)
-+-|--|||-|+|-...|. -+-|-|. +. --..+|+++.----+--+|++.|..|..|+|-|-.
T Consensus 25 ~trLvECGW~d~ik~mcrn----iimEkG~--~n-~tvdqL~AeitPkaRaLVPd~VKkEll~rirt~L~ 87 (92)
T KOG4479|consen 25 HTRLVECGWHDDIKEMCRN----IIMEKGV--DN-ITVDQLAAEITPKARALVPDVVKKELLLRIRTALD 87 (92)
T ss_pred HHHHHHcccHHHHHHHHHH----HHHHhcc--cc-ccHHHHHHHhCchhhhhchHHHHHHHHHHHHHHHH
Confidence 4668889999999776554 5677787 33 44678998887767778999999999999998754
No 43
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=75.02 E-value=12 Score=36.03 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=30.5
Q ss_pred CCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCCCC
Q 013968 85 SGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPV 133 (433)
Q Consensus 85 sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~~~ 133 (433)
.||.+.+++. .+.||.+||+.+.+.++.- +-+|+|..-+.++.
T Consensus 138 ~~Havfa~~t-s~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~Epl 180 (193)
T PF05408_consen 138 QEHAVFACVT-SDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQEPL 180 (193)
T ss_dssp TTEEEEEEEE-TTCEEEEETTEEEE----G-----GGEEEEEESSSS-T
T ss_pred CcceEEEEEe-eCcEEEecCCeeeeCCCCh-----hheEEEcccCcccC
Confidence 5999999888 6789999999999876544 23577887766554
No 44
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=50.61 E-value=7.3 Score=44.62 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=63.6
Q ss_pred EEEcccCCeeEEEEeceecccCCcc-ceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCCCCCCeEEEEEEcCCC
Q 013968 19 MSILQSPNILVIQLKRFEGIFGGKI-DKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIG 97 (433)
Q Consensus 19 ~~I~kLP~VLiIhLkRF~~d~~~Ki-~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~~~ 97 (433)
..|.++|+|.+|.|.-=..-...-| .+...+...+|++..-. ....+..+|+|+++|.-... +++|.|+... .+
T Consensus 676 h~is~~P~vftIvlewEk~ETe~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~N 750 (806)
T KOG1887|consen 676 HILSPCPPVFTIVLEWEKSETEKEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PN 750 (806)
T ss_pred hhcCCCCCeeEeeeehhcccchHHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cceEEEeecc-CC
Confidence 3567899999996632111001111 12233345566665443 23355678999999977642 7999999988 56
Q ss_pred CEE--EEcCCcceee-chhhhcC------CCcEEEEEEE
Q 013968 98 RWY--CCNDSYVSVS-TLQEVLS------EKVYILFFIR 127 (433)
Q Consensus 98 ~Wy--~FNDs~Vt~v-s~eeVls------e~AYmLFY~R 127 (433)
+|+ ..+|..+..+ ++.+|+. -.+=+|||+.
T Consensus 751 rwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~ 789 (806)
T KOG1887|consen 751 RWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEA 789 (806)
T ss_pred cchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHH
Confidence 777 8888876665 4555542 2355566654
No 45
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=35.43 E-value=57 Score=36.72 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred CeeEEEEeceec----------ccCCc-cceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeCC-C----------
Q 013968 26 NILVIQLKRFEG----------IFGGK-IDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS-P---------- 83 (433)
Q Consensus 26 ~VLiIhLkRF~~----------d~~~K-i~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~s-~---------- 83 (433)
-+|++.+.|-.. .++.- .+.++.+..++.+. .-.|+|.+.||+.-.+ .
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 578888888531 01122 23445555445444 3479999999984211 1
Q ss_pred CCCeEEEEEEcCCCCEEEEcCCcceeechhh
Q 013968 84 DSGHYYAYIKDAIGRWYCCNDSYVSVSTLQE 114 (433)
Q Consensus 84 ~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~ee 114 (433)
-.|||+ .++. +..||.||-..+-....++
T Consensus 549 lkG~yt-IlfT-e~Gpw~YDP~s~~s~~sr~ 577 (666)
T PF03292_consen 549 LKGYYT-ILFT-EMGPWMYDPLSIFSKNSRE 577 (666)
T ss_pred eceeEE-EEEe-cCCceeeCchhhcCcchhH
Confidence 127774 4555 4568888876655444433
No 46
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=31.74 E-value=8.9 Score=42.24 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEcccCCeeEEEEeceeccc--CCccceeeeec
Q 013968 19 MSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE 50 (433)
Q Consensus 19 ~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP 50 (433)
.++...|..++|++-||..++ -.++...+.+|
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~ 549 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLP 549 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEee
Confidence 456789999999999997432 23444444443
No 47
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=23.56 E-value=65 Score=26.32 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=24.3
Q ss_pred cccCCCCCceeEEEEEEE--cccCCeeEEEEecee
Q 013968 4 LCLFSCKKLVSARKQMSI--LQSPNILVIQLKRFE 36 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I--~kLP~VLiIhLkRF~ 36 (433)
+.|++|+...-.+|.... ..+..++=||.++|-
T Consensus 5 ~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 5 FKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 349999976545555444 468899999999985
No 48
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=23.36 E-value=1.2e+02 Score=28.30 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=25.1
Q ss_pred EEEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCccee
Q 013968 72 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSV 109 (433)
Q Consensus 72 L~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~ 109 (433)
..|+|++. .-||++..|- ++.||-+|=..-.|
T Consensus 99 ~~gfI~N~-----~~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNL-----SRHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEEC-----TTEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEecc-----CcceEEEEee-CCeeEeccCCCCCC
Confidence 46889984 4799998877 89999999866555
No 49
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=22.63 E-value=1.1e+02 Score=22.67 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhh----hhhhccchHH--HHHHHHhhh
Q 013968 343 KLQELEEVLKKEASS----VLQSCGWSEK--VLSYMRSRK 376 (433)
Q Consensus 343 ~~~~~~~~l~~~a~~----~l~~~~~~~~--~~~~m~~~k 376 (433)
.+++|++.|...... ....-+|.|+ ++-|+|+||
T Consensus 3 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~llRFLRARk 42 (55)
T PF03765_consen 3 KLKQLREHLSELDEKAPGLWDDEKEDHDDNFLLRFLRARK 42 (55)
T ss_dssp HHHHHHHHHHH--GGGTHHHTTHTSS-SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccchhcccccccCCCCHHHHHHHHHHcc
Confidence 467788888875433 2233344444 467999875
No 50
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=21.55 E-value=98 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.4
Q ss_pred EEEcCCCCEEEEcCC
Q 013968 91 YIKDAIGRWYCCNDS 105 (433)
Q Consensus 91 yIR~~~~~Wy~FNDs 105 (433)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5555 6889999874
Done!