Query 013968
Match_columns 433
No_of_seqs 209 out of 1181
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.5E-31 5.1E-36 264.5 15.4 129 2-132 230-362 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 2E-30 6.8E-35 251.1 15.6 125 3-130 216-344 (348)
3 1nb8_A Ubiquitin carboxyl-term 100.0 1.9E-31 6.6E-36 264.3 8.4 161 3-181 171-351 (353)
4 2ayn_A Ubiquitin carboxyl-term 100.0 6.9E-31 2.4E-35 261.6 12.4 130 4-133 210-398 (404)
5 3i3t_A Ubiquitin carboxyl-term 100.0 9.9E-31 3.4E-35 253.8 12.5 125 3-131 226-353 (355)
6 2gfo_A Ubiquitin carboxyl-term 100.0 5.1E-30 1.8E-34 258.4 14.4 126 2-129 267-396 (396)
7 1vjv_A Ubiquitin carboxyl-term 100.0 5.6E-30 1.9E-34 257.5 12.9 126 4-129 202-414 (415)
8 2f1z_A Ubiquitin carboxyl-term 100.0 2.1E-30 7.1E-35 269.9 9.7 161 3-181 340-520 (522)
9 3mhs_A Ubiquitin carboxyl-term 100.0 2.8E-29 9.7E-34 256.9 13.6 126 3-129 338-474 (476)
10 3ihp_A Ubiquitin carboxyl-term 99.9 5.1E-26 1.7E-30 251.4 13.0 126 1-129 561-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.1 7.7E-11 2.6E-15 119.8 8.2 79 19-104 161-308 (374)
12 3mhs_B Protein SUS1; multi-pro 97.6 0.00021 7.2E-09 60.0 8.4 69 349-426 23-91 (96)
13 4dhx_B Enhancer of yellow 2 tr 97.5 0.00027 9.2E-09 59.9 7.9 70 349-426 27-97 (101)
14 3mp2_A Non-structural protein 42.8 21 0.0007 33.7 4.1 35 73-111 161-195 (211)
15 2do5_A Splicing factor 3B subu 29.3 23 0.00079 26.5 1.6 14 411-424 29-42 (58)
16 3e1k_B Lactose regulatory prot 29.2 21 0.0007 22.1 1.1 9 364-372 9-17 (22)
17 3c0t_B Mediator of RNA polymer 28.4 22 0.00077 23.6 1.3 17 366-382 11-27 (33)
18 1qmy_A Protease, leader protea 28.1 48 0.0016 29.8 3.8 52 70-131 107-158 (167)
19 3bts_E Regulatory protein GAL4 23.0 32 0.0011 22.0 1.2 9 365-373 8-16 (26)
20 2con_A RUH-035 protein, NIN on 22.4 31 0.0011 27.7 1.3 38 2-40 29-68 (79)
21 3zed_D Capsid protein VP3; vir 21.4 1.2E+02 0.0039 29.0 5.2 29 357-396 38-66 (242)
22 2kvu_A MKL/myocardin-like prot 20.6 41 0.0014 26.9 1.7 19 411-429 47-65 (75)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=264.53 Aligned_cols=129 Identities=33% Similarity=0.568 Sum_probs=116.1
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeecc-eeecCcccccCCCCCCCceEEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP~-~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
++|+|++|++++.|.|+..|.+||+||+|||+||.++. ..|+++.|.||. .|||.+|+..... ....|+|+|||+|
T Consensus 230 ~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H 308 (367)
T 2y6e_A 230 DPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNH 308 (367)
T ss_dssp CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEE
T ss_pred CCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeec
Confidence 35899999999999999999999999999999999753 479999999996 7999999986542 3568999999999
Q ss_pred eeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCCC
Q 013968 79 SGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 132 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~~ 132 (433)
.| +.++|||+||+|+. +++||+|||+.|+++++++|+...||||||+|.+..+
T Consensus 309 ~G-~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 309 YG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp EC-SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred CC-CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 99 58999999999997 6899999999999999999999999999999987654
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.97 E-value=2e-30 Score=251.06 Aligned_cols=125 Identities=30% Similarity=0.502 Sum_probs=113.8
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEEe
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHS 79 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvHs 79 (433)
.|+|++|+..+.+.|+..|.+||+||+|||+||.++. ..|++..|.|| ..|||.+|+.... ....|+|+|||+|.
T Consensus 216 ~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~ 293 (348)
T 3nhe_A 216 KPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHS 293 (348)
T ss_dssp CCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEE
T ss_pred ceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEcc
Confidence 4899999999999999999999999999999998653 47999999999 6799999987653 34689999999999
Q ss_pred eCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCC
Q 013968 80 GFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQ 130 (433)
Q Consensus 80 G~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~ 130 (433)
| +..+|||+||+|.. .+.||+|||+.|+++++++|...+||||||+|.+.
T Consensus 294 G-~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 294 G-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp E-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred C-CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 9 69999999999985 68999999999999999999999999999999864
No 3
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.97 E-value=1.9e-31 Score=264.34 Aligned_cols=161 Identities=25% Similarity=0.376 Sum_probs=127.0
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
.|.|+.|+ ++.|.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+..........|+|+|||+|
T Consensus 171 ~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H 249 (353)
T 1nb8_A 171 KYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH 249 (353)
T ss_dssp CEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred cccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEE
Confidence 58999996 6889999999999999999999998754 479999999999999999998754445679999999999
Q ss_pred eeCCCCCCeEEEEEEc-CCCCEEEEcCCcceeechhhhcC---------------CCcEEEEEEEcCCCCCCCCCCCCCC
Q 013968 79 SGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS---------------EKVYILFFIRANQRPVSANGTFASN 142 (433)
Q Consensus 79 sG~s~~sGHYvayIR~-~~~~Wy~FNDs~Vt~vs~eeVls---------------e~AYmLFY~R~s~~~~~~~~~~~s~ 142 (433)
.| +.++|||+||||+ .+++||+|||+.|+++++++|+. .+||||||+|.+.......
T Consensus 250 ~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~~~~~------ 322 (353)
T 1nb8_A 250 SG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQ------ 322 (353)
T ss_dssp ES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHHHHTC------
T ss_pred eC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhhhhhc------
Confidence 99 4899999999996 47899999999999999999873 5799999999875322110
Q ss_pred CcccCCCCcccccccCCCccccccCCCCchhhhcCCCCC
Q 013968 143 GVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPS 181 (433)
Q Consensus 143 ~v~~~~~~~~is~~~~~~~~lk~~~~ke~~e~e~kk~~~ 181 (433)
+ ....++ |.++.+++.+++...+.++++.
T Consensus 323 ---~-~~~~~~------p~~~~~~~~~~~~~~~~~~~~~ 351 (353)
T 1nb8_A 323 ---A-VTDHDI------PQQLVERLQEEKRIEAQKRKER 351 (353)
T ss_dssp ---C-CCGGGS------CHHHHHHHHHHHHHHHCC----
T ss_pred ---c-cCcccc------CHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011223 6777788888888777777653
No 4
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.97 E-value=6.9e-31 Score=261.56 Aligned_cols=130 Identities=23% Similarity=0.297 Sum_probs=112.7
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCC----------------
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS---------------- 63 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~---------------- 63 (433)
|+|++|+..+.+.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 210 ~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 289 (404)
T 2ayn_A 210 KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLED 289 (404)
T ss_dssp CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC
T ss_pred ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhc
Confidence 789999999999999999999999999999999763 379999999999999999986420
Q ss_pred --------------------------------CCCCCceEEEEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeec
Q 013968 64 --------------------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVST 111 (433)
Q Consensus 64 --------------------------------~~~~~kYeL~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs 111 (433)
......|+|+|||+|.|.++++|||+||||..+++||+|||+.|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~ 369 (404)
T 2ayn_A 290 KKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVT 369 (404)
T ss_dssp ----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBC
T ss_pred ccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecC
Confidence 122478999999999997799999999999988999999999999999
Q ss_pred hhhhcCCC-------cEEEEEEEcCCCCC
Q 013968 112 LQEVLSEK-------VYILFFIRANQRPV 133 (433)
Q Consensus 112 ~eeVlse~-------AYmLFY~R~s~~~~ 133 (433)
+++|+... ||||||+|.+...+
T Consensus 370 ~~~v~~~~~g~~~~~aYiLfY~r~~~~~~ 398 (404)
T 2ayn_A 370 PEDILRLSGGGDWHIAYVLLYGPRRVEIM 398 (404)
T ss_dssp HHHHGGGGSSSSSCEEEEEEEECC-----
T ss_pred HHHHHhhhCCCCCceEEEEEEEecCCCCC
Confidence 99998755 99999999876443
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.97 E-value=9.9e-31 Score=253.83 Aligned_cols=125 Identities=29% Similarity=0.449 Sum_probs=110.4
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEEe
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHS 79 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvHs 79 (433)
+|+|++|++++.|.|+..|.+||+||+|||+||.++. ..|+...|.|| +.|||.+|+.... ....|+|+|||+|.
T Consensus 226 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L~avv~H~ 303 (355)
T 3i3t_A 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQLYALCNHS 303 (355)
T ss_dssp CCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEEEEEEEEE
T ss_pred CeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEEEEEEEec
Confidence 4999999999999999999999999999999999754 36999999999 6799999987643 34689999999999
Q ss_pred eCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCC
Q 013968 80 GFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR 131 (433)
Q Consensus 80 G~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~ 131 (433)
| +.++|||+||+|. .+.||+|||+.|+++++++|+..+||||||+|.+..
T Consensus 304 G-~~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 304 G-SVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp E-ETTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred C-CCCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 9 7999999999999 567999999999999999999999999999998643
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.96 E-value=5.1e-30 Score=258.43 Aligned_cols=126 Identities=31% Similarity=0.510 Sum_probs=113.8
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeec-ceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP-~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
++|+|++|+..+.|.|+..|.+||+||+|||+||.++. ..|+++.|.|| +.|||.+|+.... .....|+|+|||+|
T Consensus 267 n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H 345 (396)
T 2gfo_A 267 NRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK-NNLKKYNLFSVSNH 345 (396)
T ss_dssp TCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCC-SSCCCBEEEEEEEE
T ss_pred cccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCC-CCCceEEEEEEEEe
Confidence 35999999999999999999999999999999999763 47999999999 5799999987643 23468999999999
Q ss_pred eeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcC
Q 013968 79 SGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 129 (433)
Q Consensus 79 sG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s 129 (433)
.| ++++|||+||||+. +++||+|||+.|+++++++|....||||||+|.+
T Consensus 346 ~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 346 YG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp ES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred cC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 99 89999999999986 6899999999999999999999999999999863
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.96 E-value=5.6e-30 Score=257.50 Aligned_cols=126 Identities=27% Similarity=0.362 Sum_probs=106.0
Q ss_pred cccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCC----------------
Q 013968 4 LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS---------------- 63 (433)
Q Consensus 4 y~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~---------------- 63 (433)
|+|++|+..+.+.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 202 ~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~ 281 (415)
T 1vjv_A 202 KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEK 281 (415)
T ss_dssp -------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhh
Confidence 789999999999999999999999999999999764 379999999999999999986420
Q ss_pred ----------------------------------------------------------CCCCCceEEEEEEEEeeCCCCC
Q 013968 64 ----------------------------------------------------------QDPQPEYKLFGTIVHSGFSPDS 85 (433)
Q Consensus 64 ----------------------------------------------------------~~~~~kYeL~gVIvHsG~s~~s 85 (433)
......|+|+|||+|.|.++++
T Consensus 282 ~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~ 361 (415)
T 1vjv_A 282 EKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSES 361 (415)
T ss_dssp HHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTS
T ss_pred hhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCC
Confidence 1124789999999999977999
Q ss_pred CeEEEEEEc--CCCCEEEEcCCcceeechhhhcCCC-------cEEEEEEEcC
Q 013968 86 GHYYAYIKD--AIGRWYCCNDSYVSVSTLQEVLSEK-------VYILFFIRAN 129 (433)
Q Consensus 86 GHYvayIR~--~~~~Wy~FNDs~Vt~vs~eeVlse~-------AYmLFY~R~s 129 (433)
|||+||||. ..++||+|||+.|+++++++|+... ||||||+|+.
T Consensus 362 GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 362 GHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp SEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 999999998 5789999999999999999998755 9999999975
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.96 E-value=2.1e-30 Score=269.90 Aligned_cols=161 Identities=25% Similarity=0.374 Sum_probs=128.1
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVH 78 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvH 78 (433)
.|.|++|+ ++.|.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+..........|+|+|||+|
T Consensus 340 ~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H 418 (522)
T 2f1z_A 340 KYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVH 418 (522)
T ss_dssp CBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEE
T ss_pred eeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEe
Confidence 58999996 5889999999999999999999999764 369999999999999999998754445678999999999
Q ss_pred eeCCCCCCeEEEEEEc-CCCCEEEEcCCcceeechhhhcC---------------CCcEEEEEEEcCCCCCCCCCCCCCC
Q 013968 79 SGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS---------------EKVYILFFIRANQRPVSANGTFASN 142 (433)
Q Consensus 79 sG~s~~sGHYvayIR~-~~~~Wy~FNDs~Vt~vs~eeVls---------------e~AYmLFY~R~s~~~~~~~~~~~s~ 142 (433)
.| +.++|||+||||+ ..++||+|||+.|++++.++|+. .+||||||+|.+........
T Consensus 419 ~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~~~~~~----- 492 (522)
T 2f1z_A 419 SG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQA----- 492 (522)
T ss_dssp EC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHHHHTCC-----
T ss_pred cc-cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchHHhhcc-----
Confidence 99 4899999999996 47899999999999999999874 57999999998753322100
Q ss_pred CcccCCCCcccccccCCCccccccCCCCchhhhcCCCCC
Q 013968 143 GVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPS 181 (433)
Q Consensus 143 ~v~~~~~~~~is~~~~~~~~lk~~~~ke~~e~e~kk~~~ 181 (433)
....++ |.++.+++.+|+.+.+.++++.
T Consensus 493 -----~~~~~i------p~~~~~~~~~e~~~~~~~~~~~ 520 (522)
T 2f1z_A 493 -----VTDHDI------PQQLVERLQEEKRIEAQKRKER 520 (522)
T ss_dssp -----CCTTTS------CSHHHHHHHHTTTCC-------
T ss_pred -----cCccCC------CHHHHHHHHHHHHHHHHHHHhh
Confidence 011233 6788888888888888887764
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.96 E-value=2.8e-29 Score=256.94 Aligned_cols=126 Identities=35% Similarity=0.615 Sum_probs=115.2
Q ss_pred CcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccCCC--------CCCCceE
Q 013968 3 DLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQ--------DPQPEYK 71 (433)
Q Consensus 3 dy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~~~--------~~~~kYe 71 (433)
+|.|++|+..+.+.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+..... .....|+
T Consensus 338 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~ 417 (476)
T 3mhs_A 338 NYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYE 417 (476)
T ss_dssp CCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEE
T ss_pred CCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEE
Confidence 4999999999999999999999999999999999653 3699999999999999999876532 2346799
Q ss_pred EEEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcC
Q 013968 72 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 129 (433)
Q Consensus 72 L~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s 129 (433)
|+|||+|.| +.++|||++|+|..+++||+|||+.|+++++++|+...||||||+|++
T Consensus 418 L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 418 LIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp EEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred EEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 999999999 699999999999988999999999999999999999999999999975
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=251.43 Aligned_cols=126 Identities=32% Similarity=0.432 Sum_probs=109.2
Q ss_pred CCCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc---CCccceeeeecceeecCcccccCC--------------
Q 013968 1 MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKAS-------------- 63 (433)
Q Consensus 1 Iddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~---~~Ki~~~VeFP~~LDLs~f~~~~~-------------- 63 (433)
|++|+|++|+.++.|.|+..|.+||+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 561 Le~y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~ 640 (854)
T 3ihp_A 561 VDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPL 640 (854)
T ss_dssp EEEEEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----
T ss_pred eeeeeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCceecccccccc
Confidence 356999999999999999999999999999999999742 369999999999999999965310
Q ss_pred --------------------------------------------------------------------------------
Q 013968 64 -------------------------------------------------------------------------------- 63 (433)
Q Consensus 64 -------------------------------------------------------------------------------- 63 (433)
T Consensus 641 ~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~ 720 (854)
T 3ihp_A 641 VTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPP 720 (854)
T ss_dssp ------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CC
T ss_pred cccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCC
Confidence
Q ss_pred ----------------------------------------------------------------------CCCCCceEEE
Q 013968 64 ----------------------------------------------------------------------QDPQPEYKLF 73 (433)
Q Consensus 64 ----------------------------------------------------------------------~~~~~kYeL~ 73 (433)
......|+|+
T Consensus 721 ~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~ 800 (854)
T 3ihp_A 721 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLF 800 (854)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEE
Confidence 0001269999
Q ss_pred EEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcC
Q 013968 74 GTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 129 (433)
Q Consensus 74 gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s 129 (433)
|||+|.|.+.++|||+||||. .++||+|||+.|+.+ ++.....||||||+|.+
T Consensus 801 avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 801 AFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 999999988899999999999 689999999999997 45567899999999976
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.12 E-value=7.7e-11 Score=119.77 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=64.4
Q ss_pred EEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCC--------------------------C--------
Q 013968 19 MSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKAS--------------------------Q-------- 64 (433)
Q Consensus 19 ~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~--------------------------~-------- 64 (433)
..|.+||++|+||+.||. ...||-.+|.||..||+.+|+++.- .
T Consensus 161 ikisrLP~yLtVq~vRFg--KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~ 238 (374)
T 2vhf_A 161 LKFAEAPSCLIIQMPRFG--KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTC 238 (374)
T ss_dssp EEESSCCSEEEEECCCCS--SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHH
T ss_pred CeeecCCcceEEeeeccC--ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchh
Confidence 349999999999999993 4579999999999999988865420 0
Q ss_pred ---------------------------------CCCCceEEEEEEEEeeCCCCCCeEEEEEEc--CCCCEEEEcC
Q 013968 65 ---------------------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCND 104 (433)
Q Consensus 65 ---------------------------------~~~~kYeL~gVIvHsG~s~~sGHYvayIR~--~~~~Wy~FND 104 (433)
.+...|+|+|||+ +++|||+||||. .++.||+||-
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 239 NTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp HHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0015799999999 678999999997 4689999985
No 12
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=97.59 E-value=0.00021 Score=59.97 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=52.6
Q ss_pred HHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 013968 349 EVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 426 (433)
Q Consensus 349 ~~l~~~a~~~l~~~~~~~~~~~~m~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~ 426 (433)
+.|++--..-|.-|||.|+|...-|+.=|.. ...+.++|=..+.--|. ..||++.|.+|+.|+|.|-++
T Consensus 23 erL~~lL~~rL~EcGW~Devr~~~r~~i~~~-----~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 23 ELISNELKARLLQEGWVDKVKDLTKSEMNIN-----ESTNFTQILSTVEPKAL----EMVSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 4444445567999999999999888754333 45588887777776665 469999999999999999754
No 13
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.00027 Score=59.88 Aligned_cols=70 Identities=24% Similarity=0.432 Sum_probs=52.4
Q ss_pred HHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccC-CCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 013968 349 EVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVG-ITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 426 (433)
Q Consensus 349 ~~l~~~a~~~l~~~~~~~~~~~~m~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~ 426 (433)
+.|++.-..-|.-|||.|+|...-|.. +++.| ...+.++|=..+.--|. ..||++.|.+|+.|+|.|-++
T Consensus 27 erL~~lL~~rL~EcGW~Devr~~~r~~----i~~~g~~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~rIr~fL~~ 97 (101)
T 4dhx_B 27 ERLKELLRAKLIECGWKDQLKAHCKEV----IKEKGLEHVTVDDLVAEITPKGR----ALVPDSVKKELLQRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH----HHHHCTTTCCHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHH----HHHcCCCCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 344444455689999999999887773 33445 35688887777766664 469999999999999999754
No 14
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=42.82 E-value=21 Score=33.70 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.0
Q ss_pred EEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeec
Q 013968 73 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVST 111 (433)
Q Consensus 73 ~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs 111 (433)
.+.++.+| +.++|||+.+..... +.+|...+.+++
T Consensus 161 ~~~~vF~G-~~~~GHY~~~~~~~~---~~vDG~~~~~~~ 195 (211)
T 3mp2_A 161 VMHAVYTG-TTQNGHYMVDDIEHG---YCVDGMGIKPLK 195 (211)
T ss_dssp SEEEEEES-CTTTCEEEEEETTTT---EEEETTEEECCC
T ss_pred eeEEEEEc-CCCCceEEEEecccc---eEEeCCceeEcc
Confidence 35566799 689999999975533 999999998886
No 15
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.30 E-value=23 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhc
Q 013968 411 SLKDDLVKHLRSFS 424 (433)
Q Consensus 411 ~l~~~~~~~~~~~~ 424 (433)
.-+|.||+||++|-
T Consensus 29 g~REElvdRLk~Y~ 42 (58)
T 2do5_A 29 GNREELVERLQSYT 42 (58)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 45899999999993
No 16
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=29.24 E-value=21 Score=22.12 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=7.4
Q ss_pred chHHHHHHH
Q 013968 364 WSEKVLSYM 372 (433)
Q Consensus 364 ~~~~~~~~m 372 (433)
-+|+||+|+
T Consensus 9 tmddvynyl 17 (22)
T 3e1k_B 9 TMDDVYNYI 17 (26)
T ss_pred cHHHHHHHh
Confidence 379999986
No 17
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=28.36 E-value=22 Score=23.62 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhhhhc
Q 013968 366 EKVLSYMRSRKRQCAHE 382 (433)
Q Consensus 366 ~~~~~~m~~~k~~~~~~ 382 (433)
-++.+||.|-||-.+.+
T Consensus 11 tdilsfmksgkraaale 27 (33)
T 3c0t_B 11 TDILSFMKSGKRAAALE 27 (33)
T ss_dssp HHHHHHHHHCCCCGGGC
T ss_pred HHHHHHHHcchHHHHHH
Confidence 46889999999987765
No 18
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=28.14 E-value=48 Score=29.82 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.1
Q ss_pred eEEEEEEEEeeCCCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCC
Q 013968 70 YKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR 131 (433)
Q Consensus 70 YeL~gVIvHsG~s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~ 131 (433)
-+.+|-|.-.|. +|-+.++-. ...||.+||+.+.+.++.- +=+|+|.--+.+
T Consensus 107 aDfhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPdp-----sdVLVfvPyDqE 158 (167)
T 1qmy_A 107 ADFHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQE 158 (167)
T ss_dssp GGEEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCCG-----GGEEEEEECC--
T ss_pred hhhhhheeecCC----CceEEEEEc-cCceEEecccccccCCCCh-----hhEEEEccCCcc
Confidence 345666666664 899988876 6779999999999975432 235666654443
No 19
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=22.95 E-value=32 Score=22.03 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.7
Q ss_pred hHHHHHHHH
Q 013968 365 SEKVLSYMR 373 (433)
Q Consensus 365 ~~~~~~~m~ 373 (433)
+|+||+|+-
T Consensus 8 MDDvyNylF 16 (26)
T 3bts_E 8 MDDVYNYLF 16 (26)
T ss_pred HHHHHHHhc
Confidence 799999974
No 20
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.37 E-value=31 Score=27.74 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCcccCCCCCceeEEEEEEEcccCCeeEEEEe-cee-cccC
Q 013968 2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLK-RFE-GIFG 40 (433)
Q Consensus 2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLk-RF~-~d~~ 40 (433)
...+|++|+..+-..-...+..- --+.+||+ +|+ +..+
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~n~R 68 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPKVLNPR 68 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCCCCCCC
T ss_pred ccccccccCcccceEEEEEECCC-CcEEEeccCCccccccC
Confidence 46789999976544444444333 56778886 466 5443
No 21
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=21.37 E-value=1.2e+02 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=22.3
Q ss_pred hhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHH
Q 013968 357 SVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLL 396 (433)
Q Consensus 357 ~~l~~~~~~~~~~~~m~~~k~~~~~~~~~~~~~~~~~~~~ 396 (433)
+.|+--|..|.+|+||+. -|+++-|+++|
T Consensus 38 ~W~~knGl~D~mynfs~~-----------Dp~g~Km~r~i 66 (242)
T 3zed_D 38 SWTRKNDLTDHMYEWSKE-----------DPDAIKFGRLV 66 (242)
T ss_pred HHHhccCHHHHHHHHHhh-----------CccHHHHHHHh
Confidence 455667778999999997 46777787776
No 22
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=20.58 E-value=41 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhccCCCC
Q 013968 411 SLKDDLVKHLRSFSDGKRG 429 (433)
Q Consensus 411 ~l~~~~~~~~~~~~~~k~~ 429 (433)
..|.+||+||+.|.+++-+
T Consensus 47 G~KaeLIeRL~~~~~~~~~ 65 (75)
T 2kvu_A 47 GTKTELIERLRAYQDQISP 65 (75)
T ss_dssp SCHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHccCC
Confidence 4588999999999776543
Done!