BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013969
         (433 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1
           SV=1
          Length = 547

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 167/426 (39%), Gaps = 60/426 (14%)

Query: 21  VQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVL 79
           V + AG  Y F  Y+  L S         + L  +  IG + +G+L G+  ++  P L  
Sbjct: 28  VALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDR-SPKLSC 86

Query: 80  FIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALC-VATNSSAWLGTAVLVTNMRNFPLS 138
            IGS+  F  Y +L L       S   +L+ ++L  +   S +    +V   N  NFP  
Sbjct: 87  LIGSMCVFIAYLILNLCYKHEWSST--FLISLSLVLIGYGSVSGFYASVKCANT-NFPQH 143

Query: 139 RGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPAS 198
           RGT         GLS  VF+ + + L   +   + + L V    + LV  + +   + A 
Sbjct: 144 RGTAGAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMILVGYFSLDIFSNAE 203

Query: 199 GEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPL-SASISYASLFIMIILLMAPLAIP 257
           G+D            AS+       +    D+++PL   S  Y             +  P
Sbjct: 204 GDD------------ASIKEWELQKSRETDDNIVPLYENSNDY-------------IGSP 238

Query: 258 VKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSE 317
           V+ +     T E+  L  +   +            + PLL PSS  T    F D +    
Sbjct: 239 VRSS--SPATYETYALSDNFQETSEFFALEDRQLSNRPLLSPSSPHTKY-DFEDENTSKN 295

Query: 318 VALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLF-------LVYFAGVGSGVTV 370
                  GE + ++  R       F+  ++     ++++        L+Y   VG  V  
Sbjct: 296 TV-----GENSAQKSMRL----HVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQA 346

Query: 371 LNN---LAQIGI-AQGVHDTTI-LLSLFSFCNFVGRLGGGVVSEHFVRLVQSE-LGNELA 424
             +   L Q+ I A+ +    + LLSL SFC   GRL  G +S+  V+  +++ L N + 
Sbjct: 347 QVSTPPLNQLPINAEKIQSLQVTLLSLLSFC---GRLSSGPISDFLVKKFKAQRLWNIVI 403

Query: 425 HHLIIF 430
             L++F
Sbjct: 404 ASLLVF 409


>sp|Q01846|MDM1_YEAST Structural protein MDM1 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=MDM1 PE=1 SV=3
          Length = 1127

 Score = 38.5 bits (88), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIY 161
           E LP++  ++     T  S +L  +  + + +N PL   T   I+ GY G+S     EI 
Sbjct: 436 EFLPFFESFLGSVPETQGSTFLEYSQTIESFKN-PLEDATSEDIISGYSGISTMQLQEIS 494

Query: 162 NMLLHNSSSKLLLVLAVGV 180
           +   HN++ + + +L  G+
Sbjct: 495 SKFFHNNNLQNMKLLDEGL 513


>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
           GN=yhjX PE=1 SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 340 EDFKFTEAVVKADFWLLFLVYFAGVGSGVTVL-------NNLAQIGIAQGVHDTTILLSL 392
           +D+   E++ K  +W+L +++     SG+ V+        +LA + +    +  T++   
Sbjct: 203 KDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVI--- 259

Query: 393 FSFCNFVGRLGGGVVSEHFVRL 414
            S  N  GRL  G++S+   R+
Sbjct: 260 -SIANLSGRLVLGILSDKIARI 280


>sp|O67623|DNAJ1_AQUAE Chaperone protein DnaJ 1 OS=Aquifex aeolicus (strain VF5) GN=dnaJ1
           PE=3 SV=1
          Length = 364

 Score = 32.0 bits (71), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 289 DADKSEPLLDPSSSTTDLGSFRDN-DDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFT 345
           D  +SE   D   S  D+G FRD  + + E    + +GE     KKRRP++G+D K  
Sbjct: 61  DERRSE--YDAILSRNDVGKFRDFLEYIQEFVESIIQGEKG---KKRRPRKGQDIKMK 113


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,206,790
Number of Sequences: 539616
Number of extensions: 6400358
Number of successful extensions: 18412
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 18404
Number of HSP's gapped (non-prelim): 33
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)