Query 013969
Match_columns 433
No_of_seqs 262 out of 2071
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 03:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 3.1E-20 1.1E-24 187.5 21.4 153 9-165 22-177 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.8 3.6E-19 1.2E-23 180.2 13.8 286 12-416 27-322 (451)
3 2gfp_A EMRD, multidrug resista 99.7 1.9E-17 6.3E-22 164.2 12.7 132 27-165 15-148 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.6 3E-13 1E-17 138.7 27.0 155 27-189 28-194 (491)
5 4gc0_A D-xylose-proton symport 99.5 8.7E-14 3E-18 142.5 13.0 161 30-190 30-219 (491)
6 2cfq_A Lactose permease; trans 99.3 3E-13 1E-17 136.6 4.4 130 31-165 27-162 (417)
7 2xut_A Proton/peptide symporte 99.3 2.7E-11 9.3E-16 125.2 15.9 155 28-189 28-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 98.9 2.3E-08 7.8E-13 100.5 17.2 148 26-178 266-421 (451)
9 3o7q_A L-fucose-proton symport 98.8 4.4E-08 1.5E-12 98.1 15.5 132 26-166 272-406 (438)
10 4gc0_A D-xylose-proton symport 98.7 4.6E-07 1.6E-11 92.3 18.8 164 27-193 292-465 (491)
11 4aps_A DI-OR tripeptide H+ sym 98.6 3.9E-08 1.4E-12 100.3 7.9 158 38-195 310-476 (491)
12 2cfq_A Lactose permease; trans 98.6 2.2E-07 7.4E-12 93.4 11.9 138 48-192 260-401 (417)
13 2gfp_A EMRD, multidrug resista 98.1 2E-07 6.9E-12 91.5 -2.2 133 29-166 216-351 (375)
14 2xut_A Proton/peptide symporte 97.7 0.00012 4.1E-09 75.0 11.0 104 63-166 352-466 (524)
15 4f4s_A ATP synthase subunit 9, 30.8 1.1E+02 0.0039 22.4 5.6 40 116-156 22-61 (76)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.85 E-value=3.1e-20 Score=187.53 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=124.4
Q ss_pred CCChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969 9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC 86 (433)
Q Consensus 9 ~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~ 86 (433)
+++|..++...+..+..+. .+.++.+.|.+++++|+|..+++++.+...++.. ..++.|++.||+|+|+++.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 4455555544444444443 5678888999999999999999998888888875 5999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969 87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL 165 (433)
Q Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~ 165 (433)
+++.++++.... .++++.+++.+++.|+|.+..+.+....+.+++| ++|+++.|+..++.++|..+.+.+...+.
T Consensus 102 ~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887643211 2357888889999999999988888999999998 56999999999999999988877766554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.79 E-value=3.6e-19 Score=180.19 Aligned_cols=286 Identities=12% Similarity=0.050 Sum_probs=189.9
Q ss_pred hHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHH
Q 013969 12 WVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFG 89 (433)
Q Consensus 12 w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g 89 (433)
|..+....+..+..+ ..+.++.+.|.+.+++ +|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 455544444444433 4677888888898999 999999998888888875 4999999999999999999999999999
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc-C
Q 013969 90 YGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-N 167 (433)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-~ 167 (433)
.+++.+.... . .+++.+++.+++.|++.+..+.+....+.+++| ++|+++.|+...+.++|..+.+.+...+.. .
T Consensus 106 ~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 106 MLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876551100 0 235677778899999999888888999999998 569999999999999999888777665443 1
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHH
Q 013969 168 S-SSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIM 246 (433)
Q Consensus 168 ~-~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (433)
+ |+..+.+.+++.++..++..+++++.|+....
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 216 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL---------------------------------------------- 216 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC----------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC----------------------------------------------
Confidence 2 33333333333332222222222222111000
Q ss_pred HHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcc
Q 013969 247 IILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGE 326 (433)
Q Consensus 247 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (433)
+++ ++..+. .++ +.+.
T Consensus 217 --------------------~~~--------------------~~~~~~-------------~~~-~~~~---------- 232 (451)
T 1pw4_A 217 --------------------PPI--------------------EEYKND-------------YPD-DYNE---------- 232 (451)
T ss_dssp --------------------CSC--------------------TTTCCC-------------------------------
T ss_pred --------------------CCh--------------------hhhccc-------------ccc-cchh----------
Confidence 000 000000 000 0000
Q ss_pred cccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHh-hcCCcc--chhHHHHHHhHHHHhhh
Q 013969 327 GAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVHDT--TILLSLFSFCNFVGRLG 403 (433)
Q Consensus 327 ~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s-~G~~~~--~~~vsl~si~n~~GRl~ 403 (433)
+ +++ +...++...++.+|++.+|.+.+..++.......+......+.++ .|.+.. ....++.++++.+|+++
T Consensus 233 ~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (451)
T 1pw4_A 233 K----AEQ-ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 307 (451)
T ss_dssp -----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred h----hhc-ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 000112235788999999999988887776666666777777777 577654 56889999999999999
Q ss_pred cccchHHH--HHhhh
Q 013969 404 GGVVSEHF--VRLVQ 416 (433)
Q Consensus 404 ~G~lsD~~--~~~~~ 416 (433)
.|+++||+ ++|..
T Consensus 308 ~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 308 CGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHHHTSTTCHHH
T ss_pred HHHHHHHHhcCCchh
Confidence 99999998 76654
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.72 E-value=1.9e-17 Score=164.16 Aligned_cols=132 Identities=11% Similarity=-0.036 Sum_probs=111.3
Q ss_pred hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969 27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP 105 (433)
Q Consensus 27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~ 105 (433)
....+..+.|.+.+++|+|.++.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+.+... ++
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 87 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SS 87 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------cc
Confidence 34556667788899999999999998888888875 59999999999999999999999999988876552 34
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969 106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL 165 (433)
Q Consensus 106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~ 165 (433)
++.+++.+++.|++.+..+......+.+++| ++|+++.++...+.++|..+.+.+...+.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7788888899999998888888899999998 67999999999999999888776665443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.60 E-value=3e-13 Score=138.67 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=115.6
Q ss_pred hhhhhhccHHH-HHHH-----hCCCHHHHHHHHHHHHHHhh-ccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHh
Q 013969 27 NAYNFPLYSHS-LKSV-----LGFNQHQLTMLGVANDIGEN-VGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVS 98 (433)
Q Consensus 27 ~~y~~s~~~~~-l~~~-----~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~ 98 (433)
..|.+..+.+. ++++ +|+|..+.+++.+...++.. ..++.|++.|| +|+|+++.++.++.+++.+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 34444334433 5665 99999999998888878875 49999999999 89999999999999998876543
Q ss_pred cccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CC--chhHHHHHHhhhhhHHHHHHHHHHHHhc-CChhHHHH
Q 013969 99 RTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LS--RGTVAGILKGYGGLSAAVFTEIYNMLLH-NSSSKLLL 174 (433)
Q Consensus 99 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~-~~~~~~l~ 174 (433)
.++++.+++.+++.|+|.+..+.+....+.++|| ++ |+++.++...+.++|..+.+.+...+.+ .+|+..+.
T Consensus 105 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 105 ----PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1246777788889999999888888899999998 55 7778888888888999888888777765 34544444
Q ss_pred HHHHHHHHHHHHHHh
Q 013969 175 VLAVGVPAVCLVMMY 189 (433)
Q Consensus 175 ~~a~~~~~v~l~~~~ 189 (433)
+.++ ..+++++..+
T Consensus 181 ~~~~-~~~~~~~~~~ 194 (491)
T 4aps_A 181 LAAI-GMFIGLLVYY 194 (491)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHH
Confidence 4433 3334443333
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.50 E-value=8.7e-14 Score=142.51 Aligned_cols=161 Identities=13% Similarity=-0.007 Sum_probs=111.2
Q ss_pred hhhccHHHHHHHhCCC--------HHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 013969 30 NFPLYSHSLKSVLGFN--------QHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT 100 (433)
Q Consensus 30 ~~s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~ 100 (433)
..+...|.++++++.+ .++.+++.+...+|..+ +++.|++.||+|||+++.++.+++.++.++.++.....
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~ 109 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGF 109 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667777777432 34456777777788765 89999999999999999999999999887554211000
Q ss_pred -----------cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc--
Q 013969 101 -----------VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-- 166 (433)
Q Consensus 101 -----------~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-- 166 (433)
.-+++++++++.+++.|+|.|..+..+...+.|+.| ++||+..++...+..+|..+...+......
T Consensus 110 ~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 110 TSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp SCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 002458889999999999999998888999999998 569999999888877776555444333321
Q ss_pred ------CChhHHHHHHHHHHHHHHHHHHhh
Q 013969 167 ------NSSSKLLLVLAVGVPAVCLVMMYF 190 (433)
Q Consensus 167 ------~~~~~~l~~~a~~~~~v~l~~~~~ 190 (433)
..+++++.....++.++.++..++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4gc0_A 190 DASWLNTDGWRYMFASECIPALLFLMLLYT 219 (491)
T ss_dssp CTTTTTTTHHHHHHHTTHHHHHHHHHHGGG
T ss_pred ccccccchhhHHHhhhhhhhhhhhhhhhhc
Confidence 123455555555444444444333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35 E-value=3e-13 Score=136.63 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=83.1
Q ss_pred hhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHH-HHhcccCchhH-H
Q 013969 31 FPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWL-AVSRTVESLPY-W 107 (433)
Q Consensus 31 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~-~~~~~~~~~~~-~ 107 (433)
++.+...+++++|+|..+++++.+...++.. .+++.|+++||+|||+++.++.++.+++...+.. .... .. +
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~ 101 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-----LLQY 101 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-----HHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 3433333677899999999998887777775 4999999999999999999988876553221111 0000 00 0
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHhhccc---CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969 108 LLWIALCVATNSSAWLGTAVLVTNMRNFP---LSRGTVAGILKGYGGLSAAVFTEIYNMLL 165 (433)
Q Consensus 108 ~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~~~ 165 (433)
.......+.+.+.+..+.+.......+.+ ++||.+.|....+..+|.++.+.+...+.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 162 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123334455555555444455555554 45788888887777788887776665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.30 E-value=2.7e-11 Score=125.17 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=114.1
Q ss_pred hhhhhccHHH-HHHHhC------CCHHHHHHHHHHHHHHhh-cccccccccccc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 013969 28 AYNFPLYSHS-LKSVLG------FNQHQLTMLGVANDIGEN-VGLLPGLASNKF-PPWLVLFIGSLACFFGYGVLWLAVS 98 (433)
Q Consensus 28 ~y~~s~~~~~-l~~~~g------~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~ig~~l~~~g~~~~~~~~~ 98 (433)
.|....+.+. +++++| +|..+.+++.+...++.. ..+++|++.||+ |+|+++.++.++.+++.+++...
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 3333334443 678899 999999998887777775 589999999999 99999999999999988866542
Q ss_pred cccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHH---HHhhhhhHHHHHHHHHHHHhcC-ChhHHH
Q 013969 99 RTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGI---LKGYGGLSAAVFTEIYNMLLHN-SSSKLL 173 (433)
Q Consensus 99 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi---~~~~~glg~~i~~~l~~~~~~~-~~~~~l 173 (433)
. .+++.+++.+++.|++.+..+.+....+.+++|+ +||++.++ ...+.++|.++.+.+...+.+. +|+..+
T Consensus 106 ~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 106 E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 1 1467777788889999988888888999999985 58877766 7777888888887776666543 454444
Q ss_pred HHHHHHHHHHHHHHHh
Q 013969 174 LVLAVGVPAVCLVMMY 189 (433)
Q Consensus 174 ~~~a~~~~~v~l~~~~ 189 (433)
.+.+++ .+++++..+
T Consensus 182 ~~~~~~-~~~~~~~~~ 196 (524)
T 2xut_A 182 GIPGVL-MFVATVFFW 196 (524)
T ss_dssp HHHHHH-HHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHH
Confidence 444443 333333333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.93 E-value=2.3e-08 Score=100.48 Aligned_cols=148 Identities=16% Similarity=0.027 Sum_probs=105.8
Q ss_pred hhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc--CchHHHHHHHHHHH-HHHHHHHHHHhcc
Q 013969 26 GNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF--PPWLVLFIGSLACF-FGYGVLWLAVSRT 100 (433)
Q Consensus 26 g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~--G~r~~~~ig~~l~~-~g~~~~~~~~~~~ 100 (433)
...+.+..+.|.+ ++.+|++..+.+++.+...++.. ..++.|++.||+ |+|+.+.++.++.. ++++.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 340 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----- 340 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-----
Confidence 3355566677776 44489999999997777767765 489999999999 99999988887766 55553322
Q ss_pred cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhh-HHHHHHHHHHHHhcC-ChhHHHHHHH
Q 013969 101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGL-SAAVFTEIYNMLLHN-SSSKLLLVLA 177 (433)
Q Consensus 101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~-~~~~~l~~~a 177 (433)
.+..+.+.+.+..++.|++.+..+......+.+.+|++ ||++.|+......+ |.++.+.+...+.+. ++...+.+.+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 11123555555566677777666666678889999965 99999999998888 998888888877764 3333333333
Q ss_pred H
Q 013969 178 V 178 (433)
Q Consensus 178 ~ 178 (433)
+
T Consensus 421 ~ 421 (451)
T 1pw4_A 421 G 421 (451)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.84 E-value=4.4e-08 Score=98.08 Aligned_cols=132 Identities=10% Similarity=-0.030 Sum_probs=96.0
Q ss_pred hhhhhhhccHHHH-H-HHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013969 26 GNAYNFPLYSHSL-K-SVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE 102 (433)
Q Consensus 26 g~~y~~s~~~~~l-~-~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~ 102 (433)
+..+.+..+.|.+ . +.+|++..+.+.+.....++.. ..++.|++.||+|+|+++.++.++..++++.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------ 345 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------ 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------
Confidence 3344555555655 4 4569999999997777666665 48999999999999999999998888877655431
Q ss_pred chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969 103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH 166 (433)
Q Consensus 103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~ 166 (433)
++.+.+.. .++.|++.+..+........+.+|++|+.+.++...+ .+|+++.+.+...+.+
T Consensus 346 -~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 346 -GGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVSD 406 (438)
T ss_dssp -CHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred -CCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 12333322 3556666776776677777999998899999988754 4888888888777765
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.72 E-value=4.6e-07 Score=92.26 Aligned_cols=164 Identities=18% Similarity=0.148 Sum_probs=102.4
Q ss_pred hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969 27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP 105 (433)
Q Consensus 27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~ 105 (433)
..+.+..|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+....+++.+.+........ ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 369 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PG 369 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CH
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--ch
Confidence 35566677888888889888777665555545554 4788999999999999999999988887776655433321 12
Q ss_pred HHH-HHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-------ChhHHHHHH
Q 013969 106 YWL-LWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-------SSSKLLLVL 176 (433)
Q Consensus 106 ~~~-l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-------~~~~~l~~~ 176 (433)
... +.++....+.+.+. ........+|.||.+ |+++.|+..+...+++.+.+.+...+... .....+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHTTT-THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 222 22222222222222 122345678999965 99999999888778887766554433321 122233444
Q ss_pred HHHHHHHHHHHHhhccc
Q 013969 177 AVGVPAVCLVMMYFVRP 193 (433)
Q Consensus 177 a~~~~~v~l~~~~~~r~ 193 (433)
++++++..+..++++++
T Consensus 449 ~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHheecC
Confidence 55555555555555543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.63 E-value=3.9e-08 Score=100.32 Aligned_cols=158 Identities=6% Similarity=-0.002 Sum_probs=99.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHH-----HHHHHHHHHHHHHHHHHhcc--cCchhHHHH
Q 013969 38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLF-----IGSLACFFGYGVLWLAVSRT--VESLPYWLL 109 (433)
Q Consensus 38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----ig~~l~~~g~~~~~~~~~~~--~~~~~~~~l 109 (433)
+++.++.+..+.+.+.....++.. ..++.|++.||+|+|+... +|.++.+++++.+....... ....+.+.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4aps_A 310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL 389 (491)
T ss_dssp HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence 455567765555554444444543 4788999999999986655 77777777776554422110 001124455
Q ss_pred HHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 013969 110 WIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMM 188 (433)
Q Consensus 110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~ 188 (433)
.+..++.|+|.+..+......+.+.+|+ +||++.|+......+|+.+.+.+...+.+.+....+...+++.++..++..
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778777777778889999995 599999999999889998887776555554555555556665555555555
Q ss_pred hhcccCC
Q 013969 189 YFVRPCT 195 (433)
Q Consensus 189 ~~~r~~~ 195 (433)
++.+..+
T Consensus 470 ~~~~~~~ 476 (491)
T 4aps_A 470 FLSKRIQ 476 (491)
T ss_dssp HC-----
T ss_pred HHHHHHH
Confidence 5554443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.59 E-value=2.2e-07 Score=93.42 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhh
Q 013969 48 QLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTA 126 (433)
Q Consensus 48 ~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~ 126 (433)
+.+.+.....++.. ..++.|++.||+|+|+++.++.++.+++++.+.. .+ +.+.+.+..++.+++.+.....
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT--SALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CC--SHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444444443 4788999999999999999888888777654321 11 2344444444445444444445
Q ss_pred HHHHHhhcccCC-chhHHHHH-HhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969 127 VLVTNMRNFPLS-RGTVAGIL-KGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVR 192 (433)
Q Consensus 127 ~~~~~~~~Fp~~-RG~a~gi~-~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r 192 (433)
....+.+.+|++ ||++.|+. ....++|+.+.+.+...+.+. +....+.+.+++.++..++..++.|
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 567889999954 99999985 667778888887777766653 2333334444443333333333344
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.09 E-value=2e-07 Score=91.53 Aligned_cols=133 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHH-HHHHHHHHHHHHhcccCchh
Q 013969 29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLA-CFFGYGVLWLAVSRTVESLP 105 (433)
Q Consensus 29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l-~~~g~~~~~~~~~~~~~~~~ 105 (433)
+.+..+.|. +++++|++..+.+.+.....++.. ..++.|++.||+|+|.. ++... ...+...+...... ..+
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 290 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFG---VMN 290 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhc---ccc
Confidence 333344444 466689999999987777777775 48999999999988333 33332 22222211111111 123
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969 106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH 166 (433)
Q Consensus 106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~ 166 (433)
.+.+++..++.|++.+..+......+.+.+|++||++.|+......+|..+.+.+...+.+
T Consensus 291 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 291 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555556666777777777777788899999889999999998888888877666655543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.74 E-value=0.00012 Score=75.03 Aligned_cols=104 Identities=8% Similarity=-0.053 Sum_probs=68.0
Q ss_pred cccccccc----cccC----chHHHHHHHHHHHHHHHHHHHHHhcc--cCchhHHHHHHHHHHHHhchhhhhhhHHHHHh
Q 013969 63 GLLPGLAS----NKFP----PWLVLFIGSLACFFGYGVLWLAVSRT--VESLPYWLLWIALCVATNSSAWLGTAVLVTNM 132 (433)
Q Consensus 63 ~~~~G~l~----Dr~G----~r~~~~ig~~l~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~ 132 (433)
.++.|++. ||.| +++.+.+|.++.+++++.+....... ....+.+.+.+..++.|++.+..+......+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666654 5554 34667778888777776543311000 00113455555666778888777777778889
Q ss_pred hccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969 133 RNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH 166 (433)
Q Consensus 133 ~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~ 166 (433)
+.+| ++||+++|+.....++|+.+.+.+...+.+
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998 469999999999999999998888776664
No 15
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=30.78 E-value=1.1e+02 Score=22.38 Aligned_cols=40 Identities=28% Similarity=0.058 Sum_probs=28.9
Q ss_pred HHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHH
Q 013969 116 ATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAV 156 (433)
Q Consensus 116 ~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i 156 (433)
.|+|.|..+...+..+.|+ |+-|+........++.+.-++
T Consensus 22 ~giGiG~vfg~~i~~~aRn-P~~~~~l~~~~ilG~Al~Ea~ 61 (76)
T 4f4s_A 22 AGIGIAIVFAALINGVSRN-PSIKDTVFPMAILGFALSEAT 61 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhcC-hhHHHhHHHHHHHHHHHHHHH
Confidence 4566677777777888888 888888877766776666543
Done!