Query 013970
Match_columns 433
No_of_seqs 192 out of 1617
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 00:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 6.7E-79 1.4E-83 614.8 28.4 425 1-433 77-508 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 2.6E-66 5.6E-71 529.8 25.6 335 1-392 84-437 (451)
3 PRK11412 putative uracil/xanth 100.0 4.8E-61 1E-65 496.1 31.7 338 1-391 72-430 (433)
4 PRK10720 uracil transporter; P 100.0 1.4E-55 3E-60 457.3 31.1 325 1-391 68-408 (428)
5 TIGR03616 RutG pyrimidine util 100.0 1.9E-54 4.2E-59 448.6 31.5 337 1-391 84-428 (429)
6 TIGR03173 pbuX xanthine permea 100.0 4.5E-54 9.8E-59 444.1 31.4 330 1-389 63-406 (406)
7 TIGR00801 ncs2 uracil-xanthine 100.0 9.2E-54 2E-58 442.7 30.5 325 1-387 71-415 (415)
8 PF00860 Xan_ur_permease: Perm 100.0 4.2E-50 9.1E-55 412.4 20.8 309 1-343 65-387 (389)
9 COG2252 Xanthine/uracil/vitami 99.9 4.4E-24 9.5E-29 217.9 24.3 294 33-390 99-413 (436)
10 COG0659 SUL1 Sulfate permease 99.9 5.6E-20 1.2E-24 196.2 25.2 247 32-315 94-371 (554)
11 TIGR00815 sulP high affinity s 99.7 4.9E-16 1.1E-20 167.2 26.4 239 34-303 95-369 (563)
12 TIGR00843 benE benzoate transp 99.7 4.6E-16 1E-20 158.7 24.0 238 33-310 101-348 (395)
13 PRK11660 putative transporter; 99.7 4.2E-16 9.1E-21 167.9 24.5 248 33-303 100-389 (568)
14 PF03594 BenE: Benzoate membra 99.7 1.1E-14 2.3E-19 146.5 23.2 235 33-310 85-332 (378)
15 PF00916 Sulfate_transp: Sulfa 99.6 5.1E-15 1.1E-19 145.4 12.1 245 52-321 1-276 (280)
16 COG3135 BenE Uncharacterized p 99.5 2.9E-12 6.2E-17 126.8 23.2 241 33-316 100-353 (402)
17 KOG0236 Sulfate/bicarbonate/ox 99.3 1.5E-10 3.3E-15 126.6 21.9 259 33-318 163-454 (665)
18 TIGR00834 ae anion exchange pr 97.9 0.0014 3.1E-08 73.7 21.3 260 42-318 460-799 (900)
19 KOG1172 Na+-independent Cl/HCO 97.6 0.0047 1E-07 68.5 19.1 257 41-317 450-774 (876)
20 PF11840 DUF3360: Protein of u 97.3 0.015 3.2E-07 59.0 16.9 251 43-321 149-419 (492)
21 PF00955 HCO3_cotransp: HCO3- 94.0 0.016 3.5E-07 61.8 0.2 199 104-318 257-480 (510)
22 COG0659 SUL1 Sulfate permease 88.0 10 0.00022 41.4 13.9 121 188-320 24-155 (554)
23 TIGR00815 sulP high affinity s 84.5 12 0.00025 40.8 12.3 117 189-316 18-150 (563)
24 KOG4085 Uncharacterized conser 83.1 2.9 6.3E-05 37.1 5.5 44 261-308 29-72 (175)
25 PRK11660 putative transporter; 82.0 21 0.00045 39.0 13.0 116 188-315 32-155 (568)
26 PF03594 BenE: Benzoate membra 63.9 19 0.00042 37.2 6.7 114 183-300 2-126 (378)
27 TIGR00843 benE benzoate transp 58.8 38 0.00083 35.4 7.9 114 186-300 21-142 (395)
28 TIGR00931 antiport_nhaC Na+/H+ 52.7 2.9E+02 0.0063 29.4 13.5 30 186-215 310-339 (454)
29 PF02652 Lactate_perm: L-lacta 49.4 3.2E+02 0.007 29.7 13.4 54 188-242 66-119 (522)
30 TIGR00822 EII-Sor PTS system, 47.5 60 0.0013 32.1 6.8 40 281-321 163-202 (265)
31 TIGR00801 ncs2 uracil-xanthine 37.4 1.5E+02 0.0031 31.1 8.3 94 222-316 41-148 (415)
32 TIGR00834 ae anion exchange pr 30.1 9.5E+02 0.021 28.1 14.4 188 183-389 366-615 (900)
33 PF00860 Xan_ur_permease: Perm 29.9 1.1E+02 0.0024 31.6 5.9 52 268-319 96-147 (389)
34 PF13142 DUF3960: Domain of un 27.8 28 0.0006 27.8 0.8 26 381-406 22-47 (87)
35 PRK10720 uracil transporter; P 24.4 2.7E+02 0.0059 29.3 7.8 46 268-313 93-141 (428)
36 COG3715 ManY Phosphotransferas 23.7 2.7E+02 0.0058 27.6 6.9 46 274-321 157-202 (265)
37 COG3949 Uncharacterized membra 23.4 8.3E+02 0.018 25.1 12.1 44 26-69 23-80 (349)
38 TIGR03173 pbuX xanthine permea 22.7 4.6E+02 0.01 27.1 9.0 32 42-73 298-329 (406)
39 COG3135 BenE Uncharacterized p 22.5 2.5E+02 0.0054 29.2 6.6 50 268-320 109-158 (402)
40 PLN02776 prenyltransferase 21.4 8.9E+02 0.019 24.8 13.0 13 123-135 124-136 (341)
41 PF04172 LrgB: LrgB-like famil 21.1 2.4E+02 0.0053 26.9 6.0 79 56-140 10-94 (215)
42 PRK11412 putative uracil/xanth 20.7 5.3E+02 0.011 27.3 9.0 33 41-73 319-351 (433)
43 PRK11375 allantoin permease; P 20.0 4.9E+02 0.011 27.8 8.8 20 372-391 456-475 (484)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.7e-79 Score=614.82 Aligned_cols=425 Identities=59% Similarity=1.079 Sum_probs=400.3
Q ss_pred CCCccccHHHHHHHHhccCCCCCC---CCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYS---GDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLV 77 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~---~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lI 77 (433)
||+||||++|.++|.+.+.+.|.. +.++++|++.+++++||+++++++++++|++|+.+++.|++.|+.+.+++.++
T Consensus 77 ~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lv 156 (510)
T KOG1292|consen 77 QGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALV 156 (510)
T ss_pred cccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHH
Confidence 799999999999999966555542 22356999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhhccccchhhhHHHHHHHHHHHHHh--hhcccc--cCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 013970 78 GFGLYEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVIK--RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKT 153 (433)
Q Consensus 78 Gl~l~~~~~~~~~~~~~i~l~~l~~~i~l~~~--~~~~~~--~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~ 153 (433)
|++++..+.+.++.+|.++++.+++.+++++| .++... .+++.++++++++++.+.|++|.+++.+|.||..+..|
T Consensus 157 gl~l~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t 236 (510)
T KOG1292|consen 157 GLGLFQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTT 236 (510)
T ss_pred hhhhHHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCcccc
Confidence 99999999999999999999999999999999 533322 34678999999999999999999999999999888889
Q ss_pred ccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhh
Q 013970 154 QASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGV 233 (433)
Q Consensus 154 ~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl 233 (433)
|.+||+|.+.++.++||+.+|+|++||.|.||++....++...++.++||+|++.+++|.+..++++++.+|||+..||+
T Consensus 237 ~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGi 316 (510)
T KOG1292|consen 237 QSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGI 316 (510)
T ss_pred CCcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhH
Confidence 99999999988899999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhh
Q 013970 234 GILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLS 313 (433)
Q Consensus 234 ~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~ 313 (433)
+++++|+||+..++|.++||+|+++.||++||++++++|+|||++|++.||+|++++||.|++||+++++|+++...|++
T Consensus 317 g~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLS 396 (510)
T KOG1292|consen 317 GSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLS 396 (510)
T ss_pred HHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcCCCccceeehhhHHHhhhhhhhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHHHhhcCCCCc
Q 013970 314 FLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDG 393 (433)
Q Consensus 314 ~l~~v~~~~~Rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~Ln~~~~~~~~ 393 (433)
+++.+|+++.||.+|+|+|+++|+.+|+||+++ -+|.+|+.+|+++.++.++++.+.+|+++|++||++.|+.
T Consensus 397 nLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~ga-- 469 (510)
T KOG1292|consen 397 NLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGA-- 469 (510)
T ss_pred hheeeccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC--
Confidence 999999999999999999999999999999995 3479999999999999999999999999999999999952
Q ss_pred chhhcccccccccccccCCCCCccccccCCccCccCCCCC
Q 013970 394 QVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV 433 (433)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (433)
+|||||+++|++.++.+.|.|.+++|+||+++||+|++.
T Consensus 470 -tr~~RG~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~ 508 (510)
T KOG1292|consen 470 -TREQRGLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRI 508 (510)
T ss_pred -ChHhcCCcchhccccccCCccccccccCcHHHHhhcccC
Confidence 699999999999999999999999999999999999974
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-66 Score=529.80 Aligned_cols=335 Identities=26% Similarity=0.469 Sum_probs=312.0
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhcCcccHHHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGF 79 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~~-~l~~~~pp~V~G~~i~lIGl 79 (433)
||+||+|++|++++.++++ ++++.++|+++++|+++++++.. ++ |++|+|||+|+|+++++||+
T Consensus 84 lG~sFafi~p~i~~~~~~g-------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGl 148 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG-------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGL 148 (451)
T ss_pred EechHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehh
Confidence 7999999999999998764 25899999999999999999974 56 99999999999999999999
Q ss_pred HhhHhhhccccc--------------hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccC
Q 013970 80 GLYEFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 145 (433)
Q Consensus 80 ~l~~~~~~~~~~--------------~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~ 145 (433)
+|.+++++++++ +..+++.+++++++++++.| +++|+.++|+|+++||++++.+|.
T Consensus 149 sL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~-------g~~~~i~ILiGlv~G~~la~~~G~--- 218 (451)
T COG2233 149 SLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGK-------GFLRRIPILIGLVVGYLLALFMGM--- 218 (451)
T ss_pred hhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 999999987531 35688899999999888875 468999999999999999999984
Q ss_pred CCCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCC
Q 013970 146 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLS 225 (433)
Q Consensus 146 ~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~ 225 (433)
+|+++ +.++|||++|.|++||+ +|||.++++++++++++++|++||+.|++++++++..++++++
T Consensus 219 -------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~ 283 (451)
T COG2233 219 -------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLR 283 (451)
T ss_pred -------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccc
Confidence 58886 88999999999999999 9999999999999999999999999999999997766679999
Q ss_pred ccchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHH
Q 013970 226 RGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFA 305 (433)
Q Consensus 226 r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg 305 (433)
|++++||++|+++|+||++|+|||+ ||+|+++.||++||+++..++++++++|++||+++++++||.||+||+.+++||
T Consensus 284 rg~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG 362 (451)
T COG2233 284 RGLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFG 362 (451)
T ss_pred cceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhcCcCCCcc-ceeehhhHHHhhhhh---hhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHH
Q 013970 306 YVGAGGLSFLQFCNLNSFR-VKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVA 381 (433)
Q Consensus 306 ~i~~~Gi~~l~~v~~~~~R-n~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~a 381 (433)
++..+|+|++.+.|+|++| |.+|+++++.+|++. |+++++ +|++++.+++||++.|+++|
T Consensus 363 ~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~----------------~p~~~~~l~~sGia~g~i~A 426 (451)
T COG2233 363 MIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ----------------LPAWLRPLLSSGIALGTLTA 426 (451)
T ss_pred HHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhh----------------CcHHHHHHHhccHHHHHHHH
Confidence 9999999999999999756 999999999999994 888887 79999999999999999999
Q ss_pred HHHHhhcCCCC
Q 013970 382 FFLDNTLHKKD 392 (433)
Q Consensus 382 i~Ln~~~~~~~ 392 (433)
|+||+++|+.+
T Consensus 427 IvLNlll~~~~ 437 (451)
T COG2233 427 IVLNLLLPGEK 437 (451)
T ss_pred HHHHHhccccc
Confidence 99999999753
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=4.8e-61 Score=496.09 Aligned_cols=338 Identities=17% Similarity=0.304 Sum_probs=294.3
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFG 80 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~ 80 (433)
||+||+|++|+++++......+ ..+++-++..+|+++++|++++++|++++++|++|+|||+|+|+++++||++
T Consensus 72 ~G~Sf~~~~~~~~i~~~~~~~g------~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGls 145 (433)
T PRK11412 72 EGPGGLWWGTILTITLGEASRG------TPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQ 145 (433)
T ss_pred eCCchHHHHHHHHHHhcccccC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHh
Confidence 7999999999999974221100 0122345556668999999999999999999999999999999999999999
Q ss_pred hhHhhhccccc---------------hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHH-HHHhcc
Q 013970 81 LYEFGFPGVAK---------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGG 144 (433)
Q Consensus 81 l~~~~~~~~~~---------------~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~-~~g~~~ 144 (433)
|++.+++++.+ ++.+++.++++++.++++. |+++|++|+|+|+++||+++. .++.
T Consensus 146 L~~~a~~~~~G~~~~~~~~~~~~~~~~~~~a~~~l~~il~~~~~~-------~g~~~~~svLiGiv~G~v~a~~~~g~-- 216 (433)
T PRK11412 146 LTTIFFKGMLGLPFGIADPNGKIQLPPFGLSVAVMCLVLAMIIFL-------PQRIARYSLLVGTIVGWILWAFCFPS-- 216 (433)
T ss_pred hHHHHHHHhcCCCccCcccccccchHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 99999886421 2345666666666666555 456899999999999999865 4432
Q ss_pred CCCCCCcccccccccCcccccCCCCcccccccccccccc-cCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcc
Q 013970 145 AYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSV 223 (433)
Q Consensus 145 ~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~-f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~ 223 (433)
|++. +.+++|. +++||.|. ||+.+++++++++++.+.|++||++|+++.++++.+++++
T Consensus 217 ---------------d~~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~ 276 (433)
T PRK11412 217 ---------------SHSL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTR 276 (433)
T ss_pred ---------------Ccch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 4443 5678884 34589995 9999999999999999999999999999999866555789
Q ss_pred CCccchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHH
Q 013970 224 LSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 303 (433)
Q Consensus 224 i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~ 303 (433)
++|++++||++|+++|+||++|+|+|+ ||+|+++.||++||+++.++|++++++||+||+++++++||.||+||+++++
T Consensus 277 l~rgi~~dGi~s~laglfg~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~ 355 (433)
T PRK11412 277 YRRSFVATGFMTLITVPLAVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVS 355 (433)
T ss_pred cccchhhccHHHHHHHhcCCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCcCCCccceeehhhHHHhhhhh---h-hHhhhhhhhcCCCCcccccccccccccccccccchhHHH
Q 013970 304 FAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSV---P-QYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGC 379 (433)
Q Consensus 304 fg~i~~~Gi~~l~~v~~~~~Rn~~ivg~sl~~Gl~~---p-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l 379 (433)
|+++..+|+|+++++|+| +||.+|+|+++.+|++. | +++++ +|++++.+++||+++|++
T Consensus 356 Fg~I~~~Gi~~l~~~~~~-~rn~~ivg~sl~~Glg~~~~p~~~~~~----------------~P~~~~~~l~sgi~~g~l 418 (433)
T PRK11412 356 YLPLLGSALVFSQQITFT-ARNIYRLALPLFVGIFLMALPPVYLQD----------------LPLTLRPLLSNGLLVGIL 418 (433)
T ss_pred HHHHHHHHHHHHHhCCCC-cccchhhHHHHHHHhhHHhCCHHHHHH----------------ChHHHHHHHcCcHHHHHH
Confidence 999999999999999998 79999999999999996 6 58887 799999999999999999
Q ss_pred HHHHHHhhcCCC
Q 013970 380 VAFFLDNTLHKK 391 (433)
Q Consensus 380 ~ai~Ln~~~~~~ 391 (433)
+|++||+++|++
T Consensus 419 ~AilLn~~~~~~ 430 (433)
T PRK11412 419 LAVLMENLIPWE 430 (433)
T ss_pred HHHHHHhhcCcc
Confidence 999999999974
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.4e-55 Score=457.26 Aligned_cols=325 Identities=20% Similarity=0.341 Sum_probs=287.7
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhh--h-HHHHHHhcCcccHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG--L-WRNVTRFLSPLSVVPLISLV 77 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~g--l-~~~l~~~~pp~V~G~~i~lI 77 (433)
||+||+|++|++++.. ++||+++|+++++|+++++++++. + ++|++|+|||+|+|.++++|
T Consensus 68 ~G~sfa~i~~~~~~~~----------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lI 131 (428)
T PRK10720 68 LGSSFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVI 131 (428)
T ss_pred EeCcHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHH
Confidence 7999999999998874 258999999999999999999862 2 67999999999999999999
Q ss_pred HHHhhHhhhcccc-----------chhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCC
Q 013970 78 GFGLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY 146 (433)
Q Consensus 78 Gl~l~~~~~~~~~-----------~~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~ 146 (433)
|+++.+.++++.+ .++.+++.+++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 132 Gl~L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~---- 200 (428)
T PRK10720 132 GLELAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM---- 200 (428)
T ss_pred HHHhHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC----
Confidence 9999999886543 134577777777766655554 457899999999999999999975
Q ss_pred CCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCc
Q 013970 147 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR 226 (433)
Q Consensus 147 ~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r 226 (433)
.|++. +.+++|+++|. |+.|.||+..+..+++.+++.++|++||+.++++..+++..+++++||
T Consensus 201 ------------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r 264 (428)
T PRK10720 201 ------------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHR 264 (428)
T ss_pred ------------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccc
Confidence 35543 56789999995 567899999999999999999999999999999998765445689999
Q ss_pred cchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHH
Q 013970 227 GVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAY 306 (433)
Q Consensus 227 ~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~ 306 (433)
++.+||++|+++|+||++|.|+|+ ||+|+++.||++||+++.++++++++++++||++++++.||.||+||+.+++|++
T Consensus 265 ~l~adGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~ 343 (428)
T PRK10720 265 SMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGV 343 (428)
T ss_pred hHhhhhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhh--hcCcCCCccceeehhhHHHhhhhhhhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHH
Q 013970 307 VGAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFL 384 (433)
Q Consensus 307 i~~~Gi~~l--~~v~~~~~Rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~L 384 (433)
+..+|+|.+ +++|++++||.+|+|+++.+|++.... + ++.++.+|+..|+++|++|
T Consensus 344 i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~--------------------~--~~~~~~~gi~~g~~~ai~L 401 (428)
T PRK10720 344 IGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV--------------------N--IGAAELKGMALATIVGIGL 401 (428)
T ss_pred HHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH--------------------H--HHHHhcCcHHHHHHHHHHH
Confidence 999999999 789998888999999999999985421 1 4567889999999999999
Q ss_pred HhhcCCC
Q 013970 385 DNTLHKK 391 (433)
Q Consensus 385 n~~~~~~ 391 (433)
|+++|..
T Consensus 402 nlll~~~ 408 (428)
T PRK10720 402 SLIFKLI 408 (428)
T ss_pred HHHhccc
Confidence 9999975
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1.9e-54 Score=448.64 Aligned_cols=337 Identities=19% Similarity=0.306 Sum_probs=289.3
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHhcCcccHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLV 77 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~---~~l~~~~pp~V~G~~i~lI 77 (433)
||+||+|++|++++...... +. ++++++++|+++++|++++++++++++ ++++|+|||+|+|+++++|
T Consensus 84 ~G~sf~f~~~~~~~~~~~~~-----~~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lI 154 (429)
T TIGR03616 84 LGSSAAFVGAVIAATGYNGQ-----GT----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAI 154 (429)
T ss_pred EcCcHHHHHHHHHHHhhccc-----CC----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHH
Confidence 69999999999987532111 11 146899999999999999999998655 8999999999999999999
Q ss_pred HHHhhHhhhccccc---hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 013970 78 GFGLYEFGFPGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQ 154 (433)
Q Consensus 78 Gl~l~~~~~~~~~~---~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~ 154 (433)
|+++++.++++.++ +...++.+++.++++.++.|+ ++|++++|+|+++||++++.++.. +..
T Consensus 155 GlsL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~------ 219 (429)
T TIGR03616 155 GLNLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL------ 219 (429)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC------
Confidence 99999999987542 123566777677666666654 578999999999999999886421 100
Q ss_pred cccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhH
Q 013970 155 ASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVG 234 (433)
Q Consensus 155 ~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~ 234 (433)
.+.+|++. +.++||+++| +|+.|+||++.++++++.++++++|++||+.++++..+++. +++++|++++||++
T Consensus 220 -~~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~ 292 (429)
T TIGR03616 220 -GKAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLA 292 (429)
T ss_pred -CccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHH
Confidence 01367775 6789999999 57789999999999999999999999999999999987542 34699999999999
Q ss_pred HHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhh
Q 013970 235 ILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSF 314 (433)
Q Consensus 235 s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~ 314 (433)
|+++|++|+.|.|+|+ ||+|+++.||++||+++..+++++++++++||+++++++||.||+||+++++|+++..+|+|+
T Consensus 293 t~~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 293 TMLSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred HHHHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h--hcCcCCCccceeehhhHHHhhhhhhhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHHHhhcCCC
Q 013970 315 L--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKK 391 (433)
Q Consensus 315 l--~~v~~~~~Rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~Ln~~~~~~ 391 (433)
+ +++|++++||.+|+|+++.+|++.- +.+++.+++||+++|+++|++||+++|++
T Consensus 372 l~~~~~d~~~~rn~~ivg~sl~~g~g~~----------------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 372 WVQNKVDLTQNGNLIMVAVTLVLGAGDF----------------------ALTIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred HHhccCCcCccceeehhHHHHHHHhHHH----------------------HHHHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 8 6789988889999999999999752 12356788999999999999999999964
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=4.5e-54 Score=444.12 Aligned_cols=330 Identities=31% Similarity=0.520 Sum_probs=296.5
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFG 80 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~ 80 (433)
+|+||+|++++..+..+ ++|++++|+++++|++++++| ++++|++|+|||+++|.++++||++
T Consensus 63 ~g~s~a~~~~~~~~~~~---------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~ 125 (406)
T TIGR03173 63 QGVSFAAVGPMIAIGAG---------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLS 125 (406)
T ss_pred ecCcHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 68999999999887643 479999999999999999999 4789999999999999999999999
Q ss_pred hhHhhhcccc-----------chhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCC
Q 013970 81 LYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDA 149 (433)
Q Consensus 81 l~~~~~~~~~-----------~~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~ 149 (433)
+.+.++++.. +++.+++.++++++++.++. |+++|++++|+++++||++++.+|.
T Consensus 126 l~~~~~~~~~g~~~~~~~~~~~~~~l~l~~l~~~il~~~~~-------~~~~~~~aiLi~ivvg~iva~~~g~------- 191 (406)
T TIGR03173 126 LMPVAINWAAGGAGAPDFGSPQNLGLALLTLVIILLLNRFG-------KGFLRSIAVLLGLVVGTIVAAALGM------- 191 (406)
T ss_pred HHHHHHHHhccCCCcccccchHHHHHHHHHHHHHHHHHHHh-------hhHHHHhHHHHHHHHHHHHHHHhcC-------
Confidence 9999886542 13457777776666555444 4467899999999999999999874
Q ss_pred CcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccch
Q 013970 150 APKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVG 229 (433)
Q Consensus 150 ~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~ 229 (433)
+|++. +.++||+++|.+++|+.|+||+..+..++.+++++++|++|+++++++..+++ .+++++||++.
T Consensus 192 ---------~~~~~-i~~~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~ 260 (406)
T TIGR03173 192 ---------VDFSG-VAEAPWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLR 260 (406)
T ss_pred ---------CCchh-hccCCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHH
Confidence 24443 56689999999888999999999999999999999999999999999998754 45688999999
Q ss_pred hhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 013970 230 WQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGA 309 (433)
Q Consensus 230 ~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~ 309 (433)
+||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+|++++++|+++..
T Consensus 261 ~~Gi~~i~aglfG~~p~t~~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~ 339 (406)
T TIGR03173 261 ADGLGSALGGLFNTFPYTSFS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAA 339 (406)
T ss_pred hccHHHHHHHHhCCCCCcchh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcCCCccceeehhhHHHhhhhh---hhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHHHh
Q 013970 310 GGLSFLQFCNLNSFRVKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDN 386 (433)
Q Consensus 310 ~Gi~~l~~v~~~~~Rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~Ln~ 386 (433)
+|+|.+++.|+||+||.+|+|+++.+|++. |+++++ +|++++++++||+++|+++|++||+
T Consensus 340 ~g~~~l~~~~~~~~rn~~i~g~~~~~g~~~~~~p~~~~~----------------~p~~~~~~~~~~~~~g~~~ai~l~~ 403 (406)
T TIGR03173 340 SGIRILSKVDFDRRRNLLIVAVSLGLGLGPTVVPEFFSQ----------------LPAWAQTLFSSGIAVGAISAILLNL 403 (406)
T ss_pred HHHHHHHhCcccCcceehhhHHHHHHHHHHHhhHHHHHH----------------ChHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999877999999999999974 888887 7999999999999999999999999
Q ss_pred hcC
Q 013970 387 TLH 389 (433)
Q Consensus 387 ~~~ 389 (433)
++|
T Consensus 404 ~~p 406 (406)
T TIGR03173 404 LFN 406 (406)
T ss_pred hcC
Confidence 987
No 7
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=9.2e-54 Score=442.66 Aligned_cols=325 Identities=29% Similarity=0.485 Sum_probs=291.5
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhh--h-hHHHHHHhcCcccHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLV 77 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~--g-l~~~l~~~~pp~V~G~~i~lI 77 (433)
||+||+|++|.+.+..+ ++|++++|+++++|+++++++++ + .++|++|+|||.|+|.++++|
T Consensus 71 ~G~sfa~i~~~~~~~~~---------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~I 135 (415)
T TIGR00801 71 LGSSFAFVSPMIAIGSG---------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLI 135 (415)
T ss_pred ecCcHHHHHHHHHHHhc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHH
Confidence 79999999999987754 35899999999999999999985 3 357899999999999999999
Q ss_pred HHHhhHhhhccccc--------------hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhc
Q 013970 78 GFGLYEFGFPGVAK--------------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVG 143 (433)
Q Consensus 78 Gl~l~~~~~~~~~~--------------~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~ 143 (433)
|+++++.++++++. ++.+++.++++++++.++.| +++|++++|+|+++||++++.+|.
T Consensus 136 Gl~L~~i~l~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~-------g~~~~~aiLigiv~g~i~a~~lg~- 207 (415)
T TIGR00801 136 GLSLIPVAVKMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGK-------GFLKSISILIGILVGYILALFMGI- 207 (415)
T ss_pred HHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 99999999987531 24567777777766666654 457899999999999999999874
Q ss_pred cCCCCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCcc
Q 013970 144 GAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSV 223 (433)
Q Consensus 144 ~~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~ 223 (433)
+|+++ +.++||+++|.+++|| |+||++.+..++++++++++|++|+++++++.+|++++++++
T Consensus 208 ---------------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~ 270 (415)
T TIGR00801 208 ---------------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPR 270 (415)
T ss_pred ---------------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCcc
Confidence 35544 5678999999988888 799999999999999999999999999999999865544788
Q ss_pred CCccchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHH
Q 013970 224 LSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 303 (433)
Q Consensus 224 i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~ 303 (433)
+||++.+||++|+++|+||++|.|+|+ ||+|+++.||++||++..++|+++++++++||++++++.||.||+||+++++
T Consensus 271 ~~r~l~adGl~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~ 349 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVM 349 (415)
T ss_pred ccchHHHhhHHHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCcCCCccceeehhhHHHhhhhh---hhHhhhhhhhcCCCCcccccccccccccccccccchhHHHH
Q 013970 304 FAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSV---PQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCV 380 (433)
Q Consensus 304 fg~i~~~Gi~~l~~v~~~~~Rn~~ivg~sl~~Gl~~---p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ 380 (433)
|+++..+|+|.+.+.|+|++||.+++|+|+.+|+++ |+++++ +| +++||+++|+++
T Consensus 350 ~~~i~~~gi~~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~----------------~p-----~~~~g~~~g~~~ 408 (415)
T TIGR00801 350 FGMIAASGIRILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGN----------------FP-----LLLSGIALAGIV 408 (415)
T ss_pred HHHHHHHHHHHHHhCccCcccceehHHHHHHHHHHHhccHHHHhh----------------Cc-----hhcccHHHHHHH
Confidence 999999999999999998789999999999999997 888766 56 789999999999
Q ss_pred HHHHHhh
Q 013970 381 AFFLDNT 387 (433)
Q Consensus 381 ai~Ln~~ 387 (433)
|++||++
T Consensus 409 ai~Ln~~ 415 (415)
T TIGR00801 409 AILLNLI 415 (415)
T ss_pred HHHHhcC
Confidence 9999974
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=4.2e-50 Score=412.42 Aligned_cols=309 Identities=32% Similarity=0.573 Sum_probs=238.8
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFG 80 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~ 80 (433)
+|+||++++........+ +.|+++|++++|+++++|++++++++++.++|++|+|||.|+|.++++||++
T Consensus 65 ~G~s~~~~~~~~~~~g~~----------~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~ 134 (389)
T PF00860_consen 65 PGPSFAFIFAFMIVIGMA----------ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLS 134 (389)
T ss_dssp EEE-GGGHHHHHGGG---------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcccccc----------cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhh
Confidence 588999999433222211 2466899999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccch--------------hhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCC
Q 013970 81 LYEFGFPGVAKC--------------VEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY 146 (433)
Q Consensus 81 l~~~~~~~~~~~--------------~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~ 146 (433)
+.+.++++.+.. ..++..+++..+.++.+. ++++|++++|+|+++||++++.+|..
T Consensus 135 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~--- 204 (389)
T PF00860_consen 135 LAPIGLKNAGGIWGNPDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV--- 204 (389)
T ss_dssp HHHHHHHHTTSS---BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhhhHhhccccccccccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc---
Confidence 999998775421 134445555555554443 56788999999999999999999853
Q ss_pred CCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCc
Q 013970 147 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR 226 (433)
Q Consensus 147 ~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r 226 (433)
|+++.+.++||+++|++++|++|.||+.++++++++++++++|++||+.++++..+++++++++++|
T Consensus 205 -------------~~~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r 271 (389)
T PF00860_consen 205 -------------DFSPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRR 271 (389)
T ss_dssp -------------TSSH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHH
T ss_pred -------------ccCcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcc
Confidence 4443256799999999999999999999999999999999999999999999999877666899999
Q ss_pred cchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHH
Q 013970 227 GVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAY 306 (433)
Q Consensus 227 ~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~ 306 (433)
++.+||++|+++|+||+.|.|+|+ ||+|.++.||++|||+...+++++++++++||+++++++||.||++|++++++|+
T Consensus 272 ~l~~dg~~~~l~gl~G~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 272 GLLADGLGTILAGLFGTSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp HHHHHHHHHHHHHHHT---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred cceeeeeeeeechhhcCCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCcCCCccceeehhhHHHhhhhhhhHh
Q 013970 307 VGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYF 343 (433)
Q Consensus 307 i~~~Gi~~l~~v~~~~~Rn~~ivg~sl~~Gl~~p~~~ 343 (433)
++++|+|++++.|+||.||.+++++++.+|++++.+.
T Consensus 351 i~~~gi~~i~~~~~~~~r~~~iv~~~l~~g~~i~~~p 387 (389)
T PF00860_consen 351 IMMSGIRNIDWVDLDSARNAFIVGLSLPLGLSIAFGP 387 (389)
T ss_dssp HHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHhHhheecccCccccHHHHHHhHHHHHHHhccC
Confidence 9999999999999999999999999999999987543
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.93 E-value=4.4e-24 Score=217.94 Aligned_cols=294 Identities=15% Similarity=0.172 Sum_probs=219.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcc-------cHHHHHHHHHHHhhHhhhcc------cc---c-hhhh
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPL-------SVVPLISLVGFGLYEFGFPG------VA---K-CVEI 95 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~-------V~G~~i~lIGl~l~~~~~~~------~~---~-~~~i 95 (433)
..||+++++++++|+++++++++|+|+|++|.+|.. .+|.++++||+........+ ++ + ...+
T Consensus 99 i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll 178 (436)
T COG2252 99 LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNAGIVVANPATLVALGDFTSPGVLL 178 (436)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhCCeEEecCcceEEeecCCCchHHH
Confidence 359999999999999999999999999999999974 46666777776544332211 11 1 2456
Q ss_pred HHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccCCCCcccccc
Q 013970 96 GLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPW 175 (433)
Q Consensus 96 ~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~ 175 (433)
++..+++++++ ..||+ ..+++++|+..+++++++|.... + .+.....|... |.
T Consensus 179 ~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~~~~--------------~-~~~~~~~p~~~-~~ 231 (436)
T COG2252 179 AILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGIDVH--------------F-GGLVGAPPSLS-PI 231 (436)
T ss_pred HHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhccccc--------------c-cccccCCCCcc-ch
Confidence 67777777666 55554 68999999999999999985310 0 00011111111 11
Q ss_pred ccccccc--ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCC--CCCccCCccchhhhhHHHHhhhcCCCCCccccc
Q 013970 176 PFQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYASATP--MPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSV 251 (433)
Q Consensus 176 ~~~~g~P--~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~--~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~ 251 (433)
..+.+.. ...+..+...+.+.+++++|++|++.++++.++..+ .+.++.+|.+.+|++++++++++|+.|.|+|.
T Consensus 232 ~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI- 310 (436)
T COG2252 232 FGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFGTSTVTAYI- 310 (436)
T ss_pred hhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcCCcchhhhh-
Confidence 1111111 122455667899999999999999999999998533 33579999999999999999999999999999
Q ss_pred cchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcCCCccceeehhh
Q 013970 252 ENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGF 331 (433)
Q Consensus 252 en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~~~~Rn~~ivg~ 331 (433)
|+...++..|.+.-..++++-++++.+.+.| +...+|..+.++++++ .|.+|. +.++++||+|..+.+
T Consensus 311 ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~AtapaLi~-vG~lM~---~~v~~id~~d~~ea~---- 378 (436)
T COG2252 311 ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPALII-VGALML---SSVKQIDWSDFTEAV---- 378 (436)
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHHHHH-HHHHHH---hhhccCCchhhhhhh----
Confidence 9999888766666666888888888866666 9999999999999998 677777 556788888866544
Q ss_pred HHHhhhhhhhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHHHhhcCC
Q 013970 332 SIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHK 390 (433)
Q Consensus 332 sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~Ln~~~~~ 390 (433)
|.++.... +| +.+...+|++.|.+.+.+++....+
T Consensus 379 --------PaF~tiv~--------------mp--lTySIa~Gia~Gfi~y~i~k~~~g~ 413 (436)
T COG2252 379 --------PAFLTIVM--------------MP--LTYSIADGIAFGFISYVILKVFTGR 413 (436)
T ss_pred --------HHHHHHHH--------------HH--HHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 87776543 56 6778899999999999999885543
No 10
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.6e-20 Score=196.18 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=184.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccc-c-----c--------------
Q 013970 32 KRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV-A-----K-------------- 91 (433)
Q Consensus 32 ~~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~-~-----~-------------- 91 (433)
++|++.++.+++++|++++++|++|+ +++.|++|+.|+-.++..||+.++..+++.+ + .
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~~ 172 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLL 172 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhcc
Confidence 68999999999999999999999998 9999999977766677888887776655431 1 0
Q ss_pred --hh---hhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccC
Q 013970 92 --CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLID 166 (433)
Q Consensus 92 --~~---~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~ 166 (433)
++ .+++.++.+++ +.+++ ..|.++.|+++++++.+++.++.... +.+ +.++
T Consensus 173 ~~~~~~~~lg~~~l~il~----~~~~~------~~~~P~~liaiv~~t~i~~~~~~~~~------------~~G--~i~~ 228 (554)
T COG0659 173 TINLATLLLGLLTLAILL----FLPRL------TPRIPSPLIALVLGTLIVWIFPLDSL------------RYG--EIPG 228 (554)
T ss_pred cccHHHHHHHHHHHHHHH----Hccch------hhhCCcHHHHHHHHHHHHHHhcCCch------------hcc--cCcc
Confidence 11 23333333333 23332 13567899999999999998864210 011 1111
Q ss_pred CCCccccccc-ccccccccCH----HHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhc
Q 013970 167 AAPWIRVPWP-FQWGAPSFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 241 (433)
Q Consensus 167 ~ap~~~~P~~-~~~g~P~f~~----~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglf 241 (433)
+ +|.. .+|+.|.+++ ..+...+.++++.++|++.+..+.+++.++ +.+.||++.++|++|+++|+|
T Consensus 229 ~-----lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrELiaqGiaNi~sglf 299 (554)
T COG0659 229 S-----LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRELIAQGIANIASGLF 299 (554)
T ss_pred c-----CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHhhHHHHHHHHh
Confidence 1 2221 1344555554 345556899999999999999999998764 478899999999999999999
Q ss_pred CCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHH-HHHHHHHhhhhhh
Q 013970 242 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFL 315 (433)
Q Consensus 242 G~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv-~fg~i~~~Gi~~l 315 (433)
|++|.|... .+......+|.+||.+.++++++++++-+ .++.++..||.+++++++++ .++++....++.+
T Consensus 300 gg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~--~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~ 371 (554)
T COG0659 300 GGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLL--FLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPL 371 (554)
T ss_pred CCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999 77777788999999999999998777655 47789999999999999886 4666666665554
No 11
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.74 E-value=4.9e-16 Score=167.24 Aligned_cols=239 Identities=17% Similarity=0.196 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccc-----------------------c
Q 013970 34 TMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV-----------------------A 90 (433)
Q Consensus 34 g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~-----------------------~ 90 (433)
-.+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++..+++.+ .
T Consensus 95 ~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~ 173 (563)
T TIGR00815 95 AIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWAGLP 173 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhh
Confidence 356677889999999999999997 9999999988877788888886664433221 0
Q ss_pred c----hhh---hHHHHHHHHHHHHHhhhcccccCccc--cchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCc
Q 013970 91 K----CVE---IGLPQLVIIVFISQYLPHVIKRGKNI--FDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 161 (433)
Q Consensus 91 ~----~~~---i~l~~l~~~i~l~~~~~~~~~~~~~~--l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~ 161 (433)
+ |+. +++.++++++ ..|++.++.++. ...+..|+.+++++++.+.+... .+ .+.
T Consensus 174 ~~~~~~~~~~~i~~~~~~~l~----~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~-~~-----------~~~- 236 (563)
T TIGR00815 174 NTHNWNWCTLVIGLVLLLFLL----YTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHK-KQ-----------GVS- 236 (563)
T ss_pred hccccchHHHHHHHHHHHHHH----HHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccC-CC-----------CeE-
Confidence 0 221 2222222222 233332211111 22367889999999877766321 00 011
Q ss_pred ccccCCCCcccccccccccccccCHHH----HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHH
Q 013970 162 AGLIDAAPWIRVPWPFQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILL 237 (433)
Q Consensus 162 ~~~v~~ap~~~~P~~~~~g~P~f~~~~----i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~l 237 (433)
.+.+.|- .+| .+..|.+||.. +...+.++++.++|++...++.++..++ +.+.||++.++|++|++
T Consensus 237 --~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~d~n~El~a~G~~N~~ 306 (563)
T TIGR00815 237 --ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KIDANQELVAQGIANIV 306 (563)
T ss_pred --EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHhhHHHHH
Confidence 1122111 122 23445666544 4456899999999999999999987654 46789999999999999
Q ss_pred hhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHH
Q 013970 238 SGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 303 (433)
Q Consensus 238 aglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~ 303 (433)
+|+||++|.+... ....+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++++.
T Consensus 307 ~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~~ 369 (563)
T TIGR00815 307 GSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIISA 369 (563)
T ss_pred HHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHH
Confidence 9999999999888 667777889999999999999887776554 56799999999999999973
No 12
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.74 E-value=4.6e-16 Score=158.67 Aligned_cols=238 Identities=16% Similarity=0.246 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccccchhhhHHHHHHHHHHHHHhhhc
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH 112 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i~l~~l~~~i~l~~~~~~ 112 (433)
.+++++.|+.+++|++.+++|++|+++|++|.+|+.+.+.+++.+.+.+.-..++...+.+.++...++..+ ..|
T Consensus 101 ~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~mll~~l----~~~- 175 (395)
T TIGR00843 101 ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFSMLLCWL----ASK- 175 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHH-
Confidence 368999999999999999999999999999999999999998877665544344334445544433322222 222
Q ss_pred ccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHH
Q 013970 113 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM 192 (433)
Q Consensus 113 ~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~ 192 (433)
|+.+++++++++++|.++++..|.. |.++ ++. + +..| .|..|+||+...+..
T Consensus 176 ------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p---~~~~P~fs~~a~~~l 227 (395)
T TIGR00843 176 ------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP---QFIAPDFSFAHSLNL 227 (395)
T ss_pred ------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---eeeCCCCCHHHHHHH
Confidence 3456799999999999999988742 2111 110 0 2223 566789998877664
Q ss_pred -HHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCC------CccccccchhhhhhccCCcc
Q 013970 193 -MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVN------GTSVSVENAGLLALTRVGSR 265 (433)
Q Consensus 193 -~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~------~tt~~~en~g~i~~Tgv~SR 265 (433)
++.+++++..+.-.-.++.|..|++ ++.|+.+.++|++|++++.||+.+ +++.. . |--+--.-..|
T Consensus 228 ~lPl~~vtm~~qnlpgiavl~aaGy~----~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic-~--G~~ah~d~~rR 300 (395)
T TIGR00843 228 ALPLFLVSLAGQFAPGIAALKAAGYN----APAKPIIAAAGLAALFAAFAGGISIGIAAITAAIC-M--GKDAHEDKDKR 300 (395)
T ss_pred HHHHHHHHHHhcCchHHHHHHHcCCC----CCchHHHHHHHHHHHHHhccCCchhhhhHHhHHHh-c--CcccccCcCcc
Confidence 7999999988887788888888764 347999999999999999999997 22222 1 11111112234
Q ss_pred hH-HHHHHHHHHHHHHh-hHHHHHHHhCcHHHHH-HHHHHHHHHHHHh
Q 013970 266 RV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVA-ALYCLFFAYVGAG 310 (433)
Q Consensus 266 ~~-~~~ag~~lillg~~-Pk~~al~~~IP~~Vlg-g~liv~fg~i~~~ 310 (433)
+. .+.+|++.+++|++ +.+..+++.+|.+.+. -+-+.+++.+..+
T Consensus 301 ~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~ 348 (395)
T TIGR00843 301 WIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGN 348 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 43 48899999999999 8999999999998886 3445667777653
No 13
>PRK11660 putative transporter; Provisional
Probab=99.73 E-value=4.2e-16 Score=167.89 Aligned_cols=248 Identities=14% Similarity=0.202 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccc-c-------c-------------
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV-A-------K------------- 91 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~-~-------~------------- 91 (433)
.+++.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.++..+++.. | .
T Consensus 100 ~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l 178 (568)
T PRK11660 100 FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQAL 178 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhh
Confidence 4566777789999999999999997 8999999977777777777775554443221 0 0
Q ss_pred ---hh---hhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCccccccccc-Ccc--
Q 013970 92 ---CV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRT-DRA-- 162 (433)
Q Consensus 92 ---~~---~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~v-d~~-- 162 (433)
++ .+++.++++++++ +++. .|.++.|+++++++++++.++..+. +.+..+......+ |-.
T Consensus 179 ~~~~~~~~~~~~~~l~lll~~----~~~~------~~iP~~li~iiv~t~~~~~~~~~~~-~v~~vg~~~~~~~~~g~~~ 247 (568)
T PRK11660 179 PTINWGDALIGIVTLGVLILW----PRLK------IRLPGHLPALLAGTAVMGVLNLLGG-HVATIGSRFHYVLADGSQG 247 (568)
T ss_pred ccCCHHHHHHHHHHHHHHHHH----Hhhc------ccCchHHHHHHHHHHHHHHHhccCC-Cceeecccccccccccccc
Confidence 11 2344444433332 3321 1356779999999999888864310 0000000000000 000
Q ss_pred -cccCCCCccccccccccccc-------ccCHHH----HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchh
Q 013970 163 -GLIDAAPWIRVPWPFQWGAP-------SFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGW 230 (433)
Q Consensus 163 -~~v~~ap~~~~P~~~~~g~P-------~f~~~~----i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~ 230 (433)
......|-+.+| |..| .++|+. +...+.++++..+|++-+..+.++..++ +.+.||++.+
T Consensus 248 ~~ip~~~p~~~~p----~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~----~~d~n~EL~a 319 (568)
T PRK11660 248 NGIPPLLPQFVLP----WNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT----KHSANSELVG 319 (568)
T ss_pred cCCCCCCCCCCCC----ccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHH
Confidence 000011222222 1111 235544 4456788899999999888888887653 3579999999
Q ss_pred hhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHH
Q 013970 231 QGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLF 303 (433)
Q Consensus 231 dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~ 303 (433)
+|++|+++|+||++|.+++. ....+...+|.++|.+.+++++++++.-+ .++.++..||.+++++++++.
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll--~l~~ll~~iP~~vLa~ili~~ 389 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALL--VLAPLLSYLPLSAMAALLLMV 389 (568)
T ss_pred HhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999987 55566678899999999888887654432 244599999999999999863
No 14
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.67 E-value=1.1e-14 Score=146.52 Aligned_cols=235 Identities=19% Similarity=0.278 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccccchhhhHHHHHHHHHHHHHhhhc
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH 112 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i~l~~l~~~i~l~~~~~~ 112 (433)
++++++.|+.+++|++.+++|++|+++|++|.+|+.+...+++.+-+..--..++.+.+++.+....++..++..+
T Consensus 85 ~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ml~~~l~~~r---- 160 (378)
T PF03594_consen 85 YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGPMLAVFLLARR---- 160 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----
Confidence 4789999999999999999999999999999999988888777554444333444455566666666555544422
Q ss_pred ccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHH
Q 013970 113 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM 192 (433)
Q Consensus 113 ~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~ 192 (433)
+.++++++.++++|.++++..|.. +.+. .+ +.++.| .|-.|+||+..++.+
T Consensus 161 -------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~----~~-~~~~~p-~~~~P~Fs~~a~v~l 211 (378)
T PF03594_consen 161 -------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA----LQ-LSLAHP-VFTTPEFSWSALVSL 211 (378)
T ss_pred -------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc----cc-ccccee-EEECCcccHHHHHHH
Confidence 345779999999999998877632 2211 11 123322 567899999998886
Q ss_pred -HHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhhhccC---------
Q 013970 193 -MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRV--------- 262 (433)
Q Consensus 193 -~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv--------- 262 (433)
++++++++..+...-.++-|..|++ +..|+-+...|+++++.+.||+.+ -|.+.+...=|
T Consensus 212 alPL~ivtmasQnlpG~aVL~a~GY~----~p~~~~~~~tGl~s~l~ApfGg~~------~nlAaitaAIc~g~eah~dp 281 (378)
T PF03594_consen 212 ALPLFIVTMASQNLPGIAVLRAAGYQ----PPVNPLITVTGLASLLAAPFGGHA------VNLAAITAAICAGPEAHPDP 281 (378)
T ss_pred HHHHHHHHHHhcchHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhhchhh------hHHHHHHHHHHcCCccCCCc
Confidence 8999999999999999999988864 678999999999999999999996 56555543212
Q ss_pred CcchH-HHHHHHHHHHHHHh-hHHHHHHHhCcHHHHHH-HHHHHHHHHHHh
Q 013970 263 GSRRV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAA-LYCLFFAYVGAG 310 (433)
Q Consensus 263 ~SR~~-~~~ag~~lillg~~-Pk~~al~~~IP~~Vlgg-~liv~fg~i~~~ 310 (433)
..||. .+.+|++.+++|++ +.+.+++...|.+.+.. +-+.+++.+..+
T Consensus 282 ~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~s 332 (378)
T PF03594_consen 282 SRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGS 332 (378)
T ss_pred ccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 23555 48899999999999 79999999999988763 344566766643
No 15
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.60 E-value=5.1e-15 Score=145.35 Aligned_cols=245 Identities=18% Similarity=0.216 Sum_probs=161.5
Q ss_pred HHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccc-c----------------------c--hh---hhHHHHHHHH
Q 013970 52 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV-A----------------------K--CV---EIGLPQLVII 103 (433)
Q Consensus 52 lg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~-~----------------------~--~~---~i~l~~l~~~ 103 (433)
+|++|+ +++.+++|..|+..++..+|+.++..+++.+ + + ++ .++..++++.
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 366786 9999999988887788888887766555421 0 0 11 1122222222
Q ss_pred HHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccC-cccccCCCCcccccc-cccccc
Q 013970 104 VFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPW-PFQWGA 181 (433)
Q Consensus 104 i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd-~~~~v~~ap~~~~P~-~~~~g~ 181 (433)
... ++.++.. ..+...+.+..++.+++++++++...... + .++ ..+.....|.+.+|. ..+|+.
T Consensus 80 ~~~-~~~~~~~-~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~~~~~~~~ 145 (280)
T PF00916_consen 80 LII-RLLPKRL-PSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPSFDISWSL 145 (280)
T ss_pred hhh-hhhhhhc-cccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCccccccccc
Confidence 221 2222100 11223445678899999998887774311 0 011 111122344444442 112211
Q ss_pred cccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhhhcc
Q 013970 182 PSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTR 261 (433)
Q Consensus 182 P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tg 261 (433)
-...+...+.++++..+|++.+.++.++..++ +.+.||++.++|++|+++|+||++|.+... .+..+...+|
T Consensus 146 ---~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~~~G 217 (280)
T PF00916_consen 146 ---ILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNYRAG 217 (280)
T ss_pred ---ccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchHHHhcC
Confidence 12345567899999999999999988887653 358999999999999999999999999988 7777778899
Q ss_pred CCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHH-HHHHHHHhhhhhhhcCcCC
Q 013970 262 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCNLN 321 (433)
Q Consensus 262 v~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv-~fg~i~~~Gi~~l~~v~~~ 321 (433)
.+||.+.++++++++++-+ .++.++..+|.+++++++++ .+.++....++.+.|.+..
T Consensus 218 a~t~~s~~~~~~~~l~~l~--~~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 218 ARTRLSGLISALFVLLVLL--FLAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKA 276 (280)
T ss_pred cceeehhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChh
Confidence 9999999999888766544 34569999999999999997 4666666666666655443
No 16
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=2.9e-12 Score=126.84 Aligned_cols=241 Identities=20% Similarity=0.260 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhccccchhhhHHHHHHHHHHHHHhhhc
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPH 112 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~~~~~~i~l~~l~~~i~l~~~~~~ 112 (433)
.++.++.|+.+++|++.++.|.+|.++|+++.+||.+...++..|=+...-.+++...+++.+.+..++..+++ |.
T Consensus 100 ~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~lpmv~~~ll~----r~ 175 (402)
T COG3135 100 LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVLPMVLAYLLA----RV 175 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH----HH
Confidence 36889999999999999999999999999999999887766664433333334444556666666655554444 22
Q ss_pred ccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHH
Q 013970 113 VIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAM 192 (433)
Q Consensus 113 ~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~ 192 (433)
+ -.+++++..+++|..++...|..+ .. ...+-.+.| .|-+|+|++.+++.+
T Consensus 176 f-------~pr~aV~aalvvgv~va~~~G~~~----------------~~---~~~~~~~~p---~~v~P~Fs~~A~l~l 226 (402)
T COG3135 176 F-------APRYAVIAALVVGVLVAALLGDLH----------------TA---LVALEISTP---TWVTPEFSFAAMLSL 226 (402)
T ss_pred c-------CchHHHHHHHHHHHHHHHHhCccc----------------cc---ccccccCcc---eeeCCcccHHHHHHH
Confidence 2 247899999999999999887421 11 112223444 677899999998885
Q ss_pred -HHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCc-------
Q 013970 193 -MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGS------- 264 (433)
Q Consensus 193 -~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~S------- 264 (433)
++.+++.|..+...-.|+-|..|++ +..+.-+.+.|+.+++++.||+.. -|.+.+...-|.+
T Consensus 227 alPL~lvtmasQN~pGiAvLka~gY~----pp~~pl~~~TGl~sll~ApfG~~t------~nLaAItAAic~gpdaHpD~ 296 (402)
T COG3135 227 ALPLFLVTMASQNLPGIAVLKAAGYQ----PPPSPLIVATGLASLLSAPFGGHT------VNLAAITAAICTGPDAHPDP 296 (402)
T ss_pred hHHHHHHHHHhccCccceeehhcCCC----CCCchHHHHhHHHHHHhcccccce------ecHHHHHHHHhcCCCCCCCh
Confidence 8999999999999999999988864 457888999999999999999985 5555555433332
Q ss_pred --chH-HHHHHHHHHHHHHh-hHHHHHHHhCcHHHHHH-HHHHHHHHHHHhhhhhhh
Q 013970 265 --RRV-VQISAGFMIFFSVL-GKFGAVFASIPAPIVAA-LYCLFFAYVGAGGLSFLQ 316 (433)
Q Consensus 265 --R~~-~~~ag~~lillg~~-Pk~~al~~~IP~~Vlgg-~liv~fg~i~~~Gi~~l~ 316 (433)
||. ..++|++-+++|+| +.+.+++...|.+.+.. +.+.+.+.++.+-.+-++
T Consensus 297 ~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l~~A~~ 353 (402)
T COG3135 297 ARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSLQAALK 353 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 58899999999999 79999999999987752 334455655554434343
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.5e-10 Score=126.57 Aligned_cols=259 Identities=15% Similarity=0.163 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhcc------cc----------------
Q 013970 33 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG------VA---------------- 90 (433)
Q Consensus 33 ~g~~~~~ga~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~------~~---------------- 90 (433)
..++.+...++++|++++++|++|+ +.+.+++|..++..++...++...-.+++. ..
T Consensus 163 ~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~ 241 (665)
T KOG0236|consen 163 TTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLL 241 (665)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhh
Confidence 5678888999999999999999998 999999996554444454555444333322 10
Q ss_pred -c------hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCccc
Q 013970 91 -K------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAG 163 (433)
Q Consensus 91 -~------~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~ 163 (433)
+ ++.+++..+++.++...+.++.. +.-.+...+.-++.+++++++++.+...+.+.. ..++ .
T Consensus 242 ~~~~~~~~~~~~~l~~l~~L~~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~--~ 310 (665)
T KOG0236|consen 242 ANLPKTLATLVLSLIFLVVLLLTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG--E 310 (665)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec--c
Confidence 0 12233333333322221222211 111123455689999999999998865321100 0010 1
Q ss_pred ccCCCCcccccccccccccccC--HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhc
Q 013970 164 LIDAAPWIRVPWPFQWGAPSFD--AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 241 (433)
Q Consensus 164 ~v~~ap~~~~P~~~~~g~P~f~--~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglf 241 (433)
-.+++..| ..|.++ ...+...+.++++.+.|+++-.++.++..++ .-+-||++.|-|++|+++++|
T Consensus 311 ---i~~g~~~~-----~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y----~vd~nqELiAlG~~Ni~sSff 378 (665)
T KOG0236|consen 311 ---IPRGFPPP-----SLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGY----KVDSNQELIALGISNILSSFF 378 (665)
T ss_pred ---CCCCCCCC-----CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----eeCCChHHHHHHHHHHhhhhh
Confidence 11222212 223222 3456668999999999999888888876554 457899999999999999999
Q ss_pred CCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHH-HHH-HHHHhhhhhhhcC
Q 013970 242 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFA-YVGAGGLSFLQFC 318 (433)
Q Consensus 242 G~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv-~fg-~i~~~Gi~~l~~v 318 (433)
++.|.|... .+..+-..+|++++...++.+++.++.-+ .++.++..+|.++++++.+. +.+ .+-...+..+.+.
T Consensus 379 ~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~--~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~ 454 (665)
T KOG0236|consen 379 GCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALL--FLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRL 454 (665)
T ss_pred ceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeC
Confidence 999999999 88888899999999997766665444322 35679999999999999886 344 4444444444433
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=97.88 E-value=0.0014 Score=73.73 Aligned_cols=260 Identities=14% Similarity=0.151 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhcccc-------------------------------
Q 013970 42 LIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA------------------------------- 90 (433)
Q Consensus 42 ~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~~~------------------------------- 90 (433)
.+.++++.++++.+.. ..++|+++.-.-=.+-++|++..+..+++.+-
T Consensus 460 giW~~~~~~lla~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (900)
T TIGR00834 460 GLWLVLLVLLLVATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALL 538 (900)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccc
Confidence 5677778888888876 78899998866555556666644443332110
Q ss_pred --------------ch---hhhHHHHHH---HHHHHHHhhhcccc------cCccccchhhHHHHHHHHHHHHHHHHhcc
Q 013970 91 --------------KC---VEIGLPQLV---IIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGG 144 (433)
Q Consensus 91 --------------~~---~~i~l~~l~---~~i~l~~~~~~~~~------~~~~~l~~~siLigivvG~~~a~~~g~~~ 144 (433)
++ ...++..++ .++.+..++|++.. +.|+.+.-+++.+++++-+.+.+.++...
T Consensus 539 ~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~ 618 (900)
T TIGR00834 539 EKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTY 618 (900)
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCc
Confidence 00 112222222 23344445555421 23555666899999999888888765211
Q ss_pred CCCCCCcccccccccC----cccc-cCCCCcccccccccccccccC-HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCC
Q 013970 145 AYNDAAPKTQASCRTD----RAGL-IDAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATP 218 (433)
Q Consensus 145 ~~~~~~~~~~~~~~vd----~~~~-v~~ap~~~~P~~~~~g~P~f~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~ 218 (433)
.+ +.+ +.+. ...-.|+--|.......|.+. ..++++.+.+++.-++|+-=+..-+++.. .+.
T Consensus 619 --~~---------kl~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e-~kL 686 (900)
T TIGR00834 619 --TQ---------KLSVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKE-RKL 686 (900)
T ss_pred --cc---------ccCCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcc-ccC
Confidence 00 111 1110 011245522210000112221 34666777888888888865444444421 223
Q ss_pred CCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhh-h---------------ccCCc-chHHHHHHHHHHHHHHh
Q 013970 219 MPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA-L---------------TRVGS-RRVVQISAGFMIFFSVL 281 (433)
Q Consensus 219 ~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~-~---------------Tgv~S-R~~~~~ag~~lillg~~ 281 (433)
.+....+-.++.-|+-+.++|++|-.+.+...-++.-.+. + .+|+. |......++ |+-+++
T Consensus 687 kKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~l-Liglsv- 764 (900)
T TIGR00834 687 KKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAV-LVGLSI- 764 (900)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHH-HHHHHH-
Confidence 3455677788999999999999998766555323322111 1 13333 444444444 332222
Q ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 013970 282 GKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFC 318 (433)
Q Consensus 282 Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v 318 (433)
-..+++..||.||+.|+.++ .|.-...|.|.+.++
T Consensus 765 -~~~PvL~~IP~aVL~GvFlY-MGv~SL~GnQ~~~Ri 799 (900)
T TIGR00834 765 -LMEPILKRIPLAVLFGIFLY-MGVTSLSGIQLFDRL 799 (900)
T ss_pred -HHHHHHhhccHHHHHHHHHH-HHHhhcccCHHHHHH
Confidence 24449999999999999999 577788888877643
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.0047 Score=68.45 Aligned_cols=257 Identities=11% Similarity=0.114 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhc-------------------------ccc-----
Q 013970 41 SLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP-------------------------GVA----- 90 (433)
Q Consensus 41 a~lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~-------------------------~~~----- 90 (433)
..+.+.++.++++.+.. ..++++|+...-=.+-++|.+..+..++. ...
T Consensus 450 VglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (876)
T KOG1172|consen 450 VGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSG 528 (876)
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCc
Confidence 35677788888888876 88888888754444444454434433332 000
Q ss_pred ---------chhhhHHHHHHHHHHHHHhhhcccc------cCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCccccc
Q 013970 91 ---------KCVEIGLPQLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQA 155 (433)
Q Consensus 91 ---------~~~~i~l~~l~~~i~l~~~~~~~~~------~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~ 155 (433)
++..++++..+..+.+..++|++.+ +.|+++.-+++.+++++-..+.++.+.. ++.
T Consensus 529 ~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~--~~~------- 599 (876)
T KOG1172|consen 529 TLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSV--ETP------- 599 (876)
T ss_pred ccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhcccc--CCC-------
Confidence 0112333333344556667776532 1244555578999999999888877521 111
Q ss_pred ccccCc----ccccCC-CCcccccccccccccccC-HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccch
Q 013970 156 SCRTDR----AGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVG 229 (433)
Q Consensus 156 ~~~vd~----~~~v~~-ap~~~~P~~~~~g~P~f~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~ 229 (433)
.++. ...-.. -.|+-.|.- ..|-+. ..++++.+.+++.-++|+-=+-.-+.+. +.+..+....+-.++
T Consensus 600 --kl~vp~~~~~t~~~~rgw~v~~~~---~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKKgsgyH~DLl 673 (876)
T KOG1172|consen 600 --KLPVPSVFPPTWPFDRGWFVPPFG---KNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKKGSGYHLDLL 673 (876)
T ss_pred --ccccCcCCCCCCcccCCeeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCCCcchhHHHH
Confidence 1111 110011 234443310 112111 2455566677777788875433333332 123335566777899
Q ss_pred hhhhHHHHhhhcCCCCCccccccchhhhhh----------------ccCCc-chHHHHHHHHHHHHHHhhHHHHHHHhCc
Q 013970 230 WQGVGILLSGLFGTVNGTSVSVENAGLLAL----------------TRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIP 292 (433)
Q Consensus 230 ~dGl~s~laglfG~~~~tt~~~en~g~i~~----------------Tgv~S-R~~~~~ag~~lillg~~Pk~~al~~~IP 292 (433)
.-|+-+.++|+||-.+..+..-++.-.+.. -+|.. |......+++.. +.-...+++..||
T Consensus 674 llgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg---ls~~~~pvL~~IP 750 (876)
T KOG1172|consen 674 LLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG---LSVLLLPVLKLIP 750 (876)
T ss_pred HHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH---HHHHHHHHHhhcc
Confidence 999999999999988776665455543322 12333 333344443322 2223556899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc
Q 013970 293 APIVAALYCLFFAYVGAGGLSFLQF 317 (433)
Q Consensus 293 ~~Vlgg~liv~fg~i~~~Gi~~l~~ 317 (433)
+||+.|+.++ .|.=...|.|..++
T Consensus 751 ~~VL~GvFlY-Mgv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 751 MPVLYGVFLY-MGVSSLPGNQFFER 774 (876)
T ss_pred HHHHHHHHHH-HhhccCCccHHHHH
Confidence 9999999998 46666667766653
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.29 E-value=0.015 Score=59.02 Aligned_cols=251 Identities=12% Similarity=0.100 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhHhhhcc----cc--chhhhHHHHHHHHHHHHHhhhccccc
Q 013970 43 IVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG----VA--KCVEIGLPQLVIIVFISQYLPHVIKR 116 (433)
Q Consensus 43 lvsGll~illg~~gl~~~l~~~~pp~V~G~~i~lIGl~l~~~~~~~----~~--~~~~i~l~~l~~~i~l~~~~~~~~~~ 116 (433)
+.-|++-+++++++--.|+.++=..-|-|..+..+|+.=.-.+++. .. +..+++++++.+.+++..|+-++.
T Consensus 149 ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~-- 226 (492)
T PF11840_consen 149 ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIE-- 226 (492)
T ss_pred HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc--
Confidence 4457777888888777888888888777766655555222112221 11 234577777777777777776653
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCccc---ccCCCCccccc--ccccccccccCHHHHHH
Q 013970 117 GKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAG---LIDAAPWIRVP--WPFQWGAPSFDAGEAFA 191 (433)
Q Consensus 117 ~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~---~v~~ap~~~~P--~~~~~g~P~f~~~~i~~ 191 (433)
|| ..++-++-+++-++++.+|.. .||.. ...-.|...+- +-++.|+|.+ +-++.
T Consensus 227 -Kr---WLaIPl~~~~a~~~a~~lGa~---------------f~f~t~pglp~lnP~YWWge~tGw~LglP~~--~hfia 285 (492)
T PF11840_consen 227 -KR---WLAIPLCSILAGVLAFALGAP---------------FEFTTEPGLPNLNPMYWWGEETGWQLGLPTL--EHFIA 285 (492)
T ss_pred -cc---hhhhhHHHHHHHHHHHHcCCC---------------ceeecCCCCCCCCCcccccCCcccccCCCcH--HHHHH
Confidence 33 445666666666677777742 22210 00111111111 1235567754 44555
Q ss_pred HHHHHHHHH----HHhHhHHHHHHhhhCCCCC---CCccCCccchhhhhHHHHhhhcCCCCCccccccchhhh-hhccCC
Q 013970 192 MMMASFVAL----VESTGAFFAVARYASATPM---PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLL-ALTRVG 263 (433)
Q Consensus 192 ~~~~~lv~~----~esig~~~av~~~~~~~~~---~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i-~~Tgv~ 263 (433)
.+++++... -|.+|+- ..++.. .++. ..-+++..+....+=+++++.+|+...+++- ..-=+- +..|.-
T Consensus 286 v~PFAiLAVaMWSpDflghr-vFqeln-ypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW-gTymIPaaIaKRP 362 (492)
T PF11840_consen 286 VLPFAILAVAMWSPDFLGHR-VFQELN-YPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW-GTYMIPAAIAKRP 362 (492)
T ss_pred hccHHHHHHHHhCchHHHHH-HHHHhc-CchhhcceeecccchhHHHHHHHHHhhcccCCcccccc-hhhhhhHHHhcCC
Confidence 554444432 3555532 234433 2222 2246888999999999999999998655544 222111 122333
Q ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHH-HHHHHHHhhhhhhhcCcCC
Q 013970 264 SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCL-FFAYVGAGGLSFLQFCNLN 321 (433)
Q Consensus 264 SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv-~fg~i~~~Gi~~l~~v~~~ 321 (433)
=|--.+..|+++++.++..-= .=..+=+||+--++++ +|--+.-.|+|+.++-+-+
T Consensus 363 IpggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~vALlvGVflPLleAGmqm~r~~k~s 419 (492)
T PF11840_consen 363 IPGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRVALLVGVFLPLLEAGMQMTRKGKTS 419 (492)
T ss_pred CCchHHHHHHHHHHHHHhcCc--chhhhcccHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 333458888899888887411 1122224777766665 5666778899988854443
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=93.99 E-value=0.016 Score=61.84 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=2.1
Q ss_pred HHHHHhhhcccc------cCccccchhhHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCcccccC-CCCccccccc
Q 013970 104 VFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLID-AAPWIRVPWP 176 (433)
Q Consensus 104 i~l~~~~~~~~~------~~~~~l~~~siLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~-~ap~~~~P~~ 176 (433)
..+..++|++.+ +.|+.+.-+++.|++++-+.+...++.. .+. -+-+ -++.+... .-.|+--|.
T Consensus 257 f~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~~~~~~--~~k----L~vp--~~f~pt~~~~r~W~v~p~- 327 (510)
T PF00955_consen 257 FWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDYLFGVD--TPK----LNVP--SSFKPTSPGKRGWFVNPF- 327 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHHHhccc--ccc----cCCC--CCCCCCCCCCCCeecCcc-
Confidence 344445555422 2456666789999999888887766521 010 0000 01111001 134554331
Q ss_pred ccccccccC-HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchh
Q 013970 177 FQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAG 255 (433)
Q Consensus 177 ~~~g~P~f~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g 255 (433)
...|.+. ..++++.+.+++.-++|+-=+..-+.+. +.+..+....+-.+..-|+-+.+.|++|-...++..-++.-
T Consensus 328 --~~~p~w~~~aA~~palll~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~ 404 (510)
T PF00955_consen 328 --GSLPWWAIFAAIIPALLLTILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPM 404 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHH
Confidence 1123322 2445556677777778765433333322 12333556677788999999999999997665554323322
Q ss_pred hhh----------------hccCCc-chHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 013970 256 LLA----------------LTRVGS-RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFC 318 (433)
Q Consensus 256 ~i~----------------~Tgv~S-R~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v 318 (433)
.+. ..+|+. |.......+ | .|+...+..++..||.||+.|+.++ .|.-...|.|.++++
T Consensus 405 Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~-L--igls~~l~pvL~~IP~~VL~GvFly-mG~~sL~gnq~~~Ri 480 (510)
T PF00955_consen 405 HVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHL-L--IGLSLFLLPVLKLIPMPVLYGVFLY-MGVTSLSGNQFFERI 480 (510)
T ss_dssp ----------------------------------------------------------------------------TTTT
T ss_pred HhCcccEEeccccCCCCCeeCeEEEecccHHHHHH-H--HHHHHHHHHHHHHhhHHHHHHHHHh-heeeeecCccHHHHH
Confidence 211 123333 333333333 2 3344446668999999999999998 355566666666544
No 22
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=88.02 E-value=10 Score=41.39 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhh--hhccCC--
Q 013970 188 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLL--ALTRVG-- 263 (433)
Q Consensus 188 ~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i--~~Tgv~-- 263 (433)
=++.-+.++++.+=|+++ -+..+|-+ -..|+.+.=++.++.++||+.+..... .-.+.. ..+-+.
T Consensus 24 Dl~AGltva~valP~ama----~a~~aGv~------p~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~ 92 (554)
T COG0659 24 DLLAGLTVAAVALPLAMA----FAIAAGVP------PEAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASL 92 (554)
T ss_pred HHHHHHHHHHHHhHHHHH----HHHHcCCC------HHHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHH
Confidence 355667778888888886 33344532 257889999999999999999876433 322111 112222
Q ss_pred -c------chHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcC
Q 013970 264 -S------RRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 320 (433)
Q Consensus 264 -S------R~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~ 320 (433)
. -.....+|++.+++|++ |++.++..||.||+-|.+--.--.|....+..+...+.
T Consensus 93 ~~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 93 VETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 12347889999999987 89999999999999877665444555655665554444
No 23
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=84.51 E-value=12 Score=40.84 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccch-hhhh-----hccC
Q 013970 189 AFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA-GLLA-----LTRV 262 (433)
Q Consensus 189 i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~-g~i~-----~Tgv 262 (433)
++.-+.++++.+-++++ .+..+|-+ ..-|+.+--+..++.++||+.+.......+. .++. .-+.
T Consensus 18 i~aGltv~~~~iP~~~a----yA~laglp------p~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMA----YAILAGLS------PIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCC------chhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 56667888888888886 34455543 2346899999999999999998777662222 1111 1111
Q ss_pred Ccc----------hHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhh
Q 013970 263 GSR----------RVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQ 316 (433)
Q Consensus 263 ~SR----------~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~ 316 (433)
... .....+|++++++|++ +++.+...+|.||+.|-+.-+.-.++.+-++.+.
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~ 150 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLL 150 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 4558889999999987 7999999999999988777655555555555443
No 24
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=2.9 Score=37.14 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=35.3
Q ss_pred cCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 013970 261 RVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVG 308 (433)
Q Consensus 261 gv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~ 308 (433)
|-.+|.+.+.++++.+++|++. .++.=|...+++++.++-|++.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfiv 72 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIV 72 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHH
Confidence 4566888999999999999776 7888888888888887666554
No 25
>PRK11660 putative transporter; Provisional
Probab=81.96 E-value=21 Score=38.97 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhhhc-------
Q 013970 188 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALT------- 260 (433)
Q Consensus 188 ~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~T------- 260 (433)
-++.-+.++++.+-|+++ .+..+|.++ .-|+.+--+++++.++||+.+..... .........
T Consensus 32 D~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~G-p~a~~~~~~~~~~~~~ 100 (568)
T PRK11660 32 DLIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSG-PTAAFVVILYPVSQQF 100 (568)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccC-hhHHHHHHHHHHHHHh
Confidence 356678888888888886 334556432 12799999999999999999887665 322211111
Q ss_pred cCC-cchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhh
Q 013970 261 RVG-SRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 315 (433)
Q Consensus 261 gv~-SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l 315 (433)
+.. .-.....+|++.+++|++ +++.+...||.||+.|.+.-+--.+..+.++.+
T Consensus 101 ~~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~ 155 (568)
T PRK11660 101 GLAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDF 155 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 012357889999999987 699999999999998776653334444444434
No 26
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=63.92 E-value=19 Score=37.22 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=72.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCcc----chhhhhHHHHhhhcCCCCCccccccchhhhh
Q 013970 183 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRG----VGWQGVGILLSGLFGTVNGTSVSVENAGLLA 258 (433)
Q Consensus 183 ~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~----l~~dGl~s~laglfG~~~~tt~~~en~g~i~ 258 (433)
+++++.+..-++..++...-+..-+....+..|. ++++.... .++.|+.++.-++.==+|..+.- +--|..-
T Consensus 2 d~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~---s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AW-StPGaAl 77 (378)
T PF03594_consen 2 DFSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGA---SPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAW-STPGAAL 77 (378)
T ss_pred CCcHHHHHHHHHHHHhhccchHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-chHHHHH
Confidence 3556667777777777777777777666666653 23444443 34556666666665556665554 3333322
Q ss_pred hccCCcch-------HHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHH
Q 013970 259 LTRVGSRR-------VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALY 300 (433)
Q Consensus 259 ~Tgv~SR~-------~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~l 300 (433)
+.....++ .++++++++++.|+.+.|..++..||.++..+++
T Consensus 78 L~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AML 126 (378)
T PF03594_consen 78 LATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAML 126 (378)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 21111111 2488899999999999999999999998876554
No 27
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=58.83 E-value=38 Score=35.38 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCC-CCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhhh-c---
Q 013970 186 AGEAFAMMMASFVALVESTGAFFAVARYASATPM-PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLAL-T--- 260 (433)
Q Consensus 186 ~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~-~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~-T--- 260 (433)
.+.+..-++..++....+..-+....+..+.++. ...-+.--.++.|+++++=+..==.|..+.- +--|..-+ +
T Consensus 21 ~s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~aw-StPGaAll~~~~~ 99 (395)
T TIGR00843 21 PPTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAW-SAPGAALLVTGFP 99 (395)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-CchHHHHHHHhcC
Confidence 4556666777777777777777766666654221 1123444566677777777766667766665 32222211 1
Q ss_pred cCCcch---HHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHH
Q 013970 261 RVGSRR---VVQISAGFMIFFSVLGKFGAVFASIPAPIVAALY 300 (433)
Q Consensus 261 gv~SR~---~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~l 300 (433)
+..-.. +++++|++++++|+.+.+..+...||.++.++++
T Consensus 100 ~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 222122 3578888889999999999999999999998887
No 28
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=52.74 E-value=2.9e+02 Score=29.39 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhhhC
Q 013970 186 AGEAFAMMMASFVALVESTGAFFAVARYAS 215 (433)
Q Consensus 186 ~~~i~~~~~~~lv~~~esig~~~av~~~~~ 215 (433)
+...+.++...+..++|..|...++.+...
T Consensus 310 ~~i~lii~~~~lggil~~~G~l~~l~~~l~ 339 (454)
T TIGR00931 310 WSLSLVMIALTFGGVLQRIGVLDVILQSAN 339 (454)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 345566788888899999999999877653
No 29
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=49.41 E-value=3.2e+02 Score=29.67 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcC
Q 013970 188 EAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFG 242 (433)
Q Consensus 188 ~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG 242 (433)
.++.+..+.+..+.|..|....+.+.-.+ ..++++++--+++=++++.+=|.-|
T Consensus 66 ~~Ii~~Ai~ly~~~~~tGa~~~I~~~l~~-is~D~r~q~lli~~~Fg~flEgaaG 119 (522)
T PF02652_consen 66 LWIIFGAILLYNLMVETGAFDRIRQWLAS-ISPDRRVQVLLIAFGFGAFLEGAAG 119 (522)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 34555688889999999999888776542 2344566666778888887766554
No 30
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=47.50 E-value=60 Score=32.07 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=34.4
Q ss_pred hhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcCC
Q 013970 281 LGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 321 (433)
Q Consensus 281 ~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~~ 321 (433)
-+.+.+++..||.-++.|.-+. -+++=+.|+.++.+.-++
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~~m~~ 202 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLRMMFK 202 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHHHHhh
Confidence 4678899999999999988876 788999999999887775
No 31
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=37.43 E-value=1.5e+02 Score=31.08 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=57.9
Q ss_pred ccCCccchhhhhHHHHhhhcCCCC---Cccccccchhhhhhc-------cCCc-chHHHHHHHHHHHHHHh-hHH--HHH
Q 013970 222 SVLSRGVGWQGVGILLSGLFGTVN---GTSVSVENAGLLALT-------RVGS-RRVVQISAGFMIFFSVL-GKF--GAV 287 (433)
Q Consensus 222 ~~i~r~l~~dGl~s~laglfG~~~---~tt~~~en~g~i~~T-------gv~S-R~~~~~ag~~lillg~~-Pk~--~al 287 (433)
.-++..+++.|++|++=++....+ ..... .|-..+.-+ +... --...++|++.++++++ .+. ..+
T Consensus 41 ~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G-~sfa~i~~~~~~~~~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i 119 (415)
T TIGR00801 41 YLVSISLLTSGIGTLLQLFRTGGQIGLPSYLG-SSFAFVSPMIAIGSGLGIPAIMGALIATGLVYTLLSLLIKKLGPRWL 119 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCceeeeeeec-CcHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346778899999999988776654 22222 332222211 1110 11246677777777764 333 245
Q ss_pred HHhCcHHHHHHHHHHHHHHHHHhhhhhhh
Q 013970 288 FASIPAPIVAALYCLFFAYVGAGGLSFLQ 316 (433)
Q Consensus 288 ~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~ 316 (433)
...+|..|.+++.+..--.+.-.|++...
T Consensus 120 ~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~ 148 (415)
T TIGR00801 120 MKLFPPVVTGPVVMLIGLSLIPVAVKMAA 148 (415)
T ss_pred HhcCCchhHHHhHHHHHHHHHHHHHHHhc
Confidence 88999999998887765566777777764
No 32
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=30.12 E-value=9.5e+02 Score=28.10 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=108.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCccchhhhhHHHHhhhcCCCCCccccccchhhhh----
Q 013970 183 SFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLA---- 258 (433)
Q Consensus 183 ~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r~l~~dGl~s~laglfG~~~~tt~~~en~g~i~---- 258 (433)
.|+...+.+.+.+++.++.-++.=..-+++.++ ..-.+++.+++++++.++=++||+-|.+-.. ..|=+.
T Consensus 366 a~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~----g~~gv~E~Llstai~Giifslf~GQPL~IlG--~TGPilvF~~ 439 (900)
T TIGR00834 366 ALNPQCLAAVIFIYFAALSPAITFGGLLGEKTR----NMMGVSELLISTAVQGVLFALLAAQPLLVVG--FSGPLLVFEE 439 (900)
T ss_pred hhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhC----CcchHHHHHHHHHHHHHHHhhhcCCceEEec--CcccHHHHHH
Confidence 466677777888888887777754444445443 2357889999999999999999999865433 222111
Q ss_pred ----hccC-------CcchHHHHHHHHHHHHHHhh--HHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhc----CcC-
Q 013970 259 ----LTRV-------GSRRVVQISAGFMIFFSVLG--KFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQF----CNL- 320 (433)
Q Consensus 259 ----~Tgv-------~SR~~~~~ag~~lillg~~P--k~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~----v~~- 320 (433)
..+- ..-|+.++.++++++++.+- .+...++--..-+.+...-+.| ..-+++.+.+ .+.
T Consensus 440 ~ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IF---I~eai~~L~~~f~~~~~~ 516 (900)
T TIGR00834 440 AFFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIF---IYETFSKLIKIFQEHPLQ 516 (900)
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcc
Confidence 0110 11366788888888877764 3333344444444443222222 2233333321 110
Q ss_pred ---C-----------------------------------CccceeehhhHHHhhhhh-hhHhhhhhhhcCCCCccccccc
Q 013970 321 ---N-----------------------------------SFRVKFILGFSIFIGLSV-PQYFNEYTAINGFGPVHTSGRW 361 (433)
Q Consensus 321 ---~-----------------------------------~~Rn~~ivg~sl~~Gl~~-p~~~~~~~~~~~~~~~~~~~~~ 361 (433)
+ ...|....++-+.+|.-. ..++.++. ....
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk----------~s~y 586 (900)
T TIGR00834 517 VFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFK----------NSRY 586 (900)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC----------CCCc
Confidence 0 002444455555555432 33333321 1123
Q ss_pred ccccccccccc-cchhHHHHHHHHHhhcC
Q 013970 362 FNDMVNVPFSS-EPFVAGCVAFFLDNTLH 389 (433)
Q Consensus 362 lp~~~~~~l~s-gi~~g~l~ai~Ln~~~~ 389 (433)
+|.+++.++++ |+.++.++-..++..++
T Consensus 587 f~~~vR~~isDfgv~iaI~~~t~v~~~~~ 615 (900)
T TIGR00834 587 FPGKARRLIGDFGVPISILIMVLVDIFIG 615 (900)
T ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 78889988876 88888888888888765
No 33
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=29.86 E-value=1.1e+02 Score=31.55 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCc
Q 013970 268 VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCN 319 (433)
Q Consensus 268 ~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~ 319 (433)
..++|++.++++++.....+...+|..|.+++.+.+-=.+.-.++++....+
T Consensus 96 ~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~ 147 (389)
T PF00860_consen 96 VLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIW 147 (389)
T ss_dssp HHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccc
Confidence 4778889999999988888999999999999988766666678888776554
No 34
>PF13142 DUF3960: Domain of unknown function (DUF3960)
Probab=27.82 E-value=28 Score=27.82 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCCcchhhccccccccc
Q 013970 381 AFFLDNTLHKKDGQVRKDRGRHWWDK 406 (433)
Q Consensus 381 ai~Ln~~~~~~~~~~~~~~~~~~~~~ 406 (433)
+=+..+++|.+++++.|||.+..|.+
T Consensus 22 ~~l~~llvp~~pkg~~KerTIl~w~~ 47 (87)
T PF13142_consen 22 KDLFSLLVPCEPKGEDKERTILMWKE 47 (87)
T ss_pred HHHHHHhcCCCCCCCCceeEEeeech
Confidence 34567888988888999999999976
No 35
>PRK10720 uracil transporter; Provisional
Probab=24.39 E-value=2.7e+02 Score=29.25 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhH-H--HHHHHhCcHHHHHHHHHHHHHHHHHhhhh
Q 013970 268 VQISAGFMIFFSVLGK-F--GAVFASIPAPIVAALYCLFFAYVGAGGLS 313 (433)
Q Consensus 268 ~~~ag~~lillg~~Pk-~--~al~~~IP~~Vlgg~liv~fg~i~~~Gi~ 313 (433)
..++|++.++++++.+ + ..+...+|..|+|.+...+--.+.-.+++
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~ 141 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAG 141 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHh
Confidence 5778888888888753 3 35778999988887776543333344444
No 36
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=23.66 E-value=2.7e+02 Score=27.57 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcCC
Q 013970 274 FMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLN 321 (433)
Q Consensus 274 ~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~~ 321 (433)
+...++ ...+..++..||.-+..|.-+ .-|++-+.|+.++-+...+
T Consensus 157 ~~~~~g-~~~V~~~l~aiP~~l~~GL~v-aGgmlpavGfAmll~~M~~ 202 (265)
T COG3715 157 LVAYFG-SSAVQSLLDAIPEWLTNGLAV-AGGMLPAVGFAMLLNMMAK 202 (265)
T ss_pred HHHHhh-HHHHHHHHHhchHHHhhhhhH-hcchhHHHHHHHHHHHHHh
Confidence 333444 567788999999999988555 4788888899888877775
No 37
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=23.36 E-value=8.3e+02 Score=25.14 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=24.2
Q ss_pred CChhhHhhhHHH---HHHHHHHHHHHHHHHHhh-----------hhHHHHHHhcCccc
Q 013970 26 DPVEKFKRTMRA---IQGSLIVASTLQIVLGFS-----------GLWRNVTRFLSPLS 69 (433)
Q Consensus 26 ~~~~~~~~g~~~---~~ga~lvsGll~illg~~-----------gl~~~l~~~~pp~V 69 (433)
+..|-||.=-.+ -.-+++++++++.+.|.. -..+.++++++|..
T Consensus 23 sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 23 SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF 80 (349)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence 445556532222 334567777777777642 12356666777644
No 38
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=22.68 E-value=4.6e+02 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcCcccHHHH
Q 013970 42 LIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 73 (433)
Q Consensus 42 ~lvsGll~illg~~gl~~~l~~~~pp~V~G~~ 73 (433)
.+++|++.+++++.+....+...+|..|.|.+
T Consensus 298 ~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 298 VAAAGVILVLLGLFPKLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47889999999988777999999998777663
No 39
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.51 E-value=2.5e+02 Score=29.16 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcC
Q 013970 268 VQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNL 320 (433)
Q Consensus 268 ~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~ 320 (433)
+++.+..+++.|++..++.+++.||.+...+++- |.+.--+++.++..+.
T Consensus 109 fiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlA---GILL~F~l~a~~a~~~ 158 (402)
T COG3135 109 FIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLA---GILLRFGLKAFKALPT 158 (402)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHH---HHHHHHHHHHHhccCC
Confidence 6888999999999999999999999876554432 3334444455544433
No 40
>PLN02776 prenyltransferase
Probab=21.43 E-value=8.9e+02 Score=24.81 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHH
Q 013970 123 RFAVIFSVVIVWI 135 (433)
Q Consensus 123 ~~siLigivvG~~ 135 (433)
..+..+|.+.|++
T Consensus 124 ~~~~~lG~~~Ga~ 136 (341)
T PLN02776 124 PANTWVGAVVGAI 136 (341)
T ss_pred chhHHHHHHHHHH
Confidence 3467888887763
No 41
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=21.06 E-value=2.4e+02 Score=26.90 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=38.1
Q ss_pred hhHHHHHH-hcCcccHHHHHHHHHHHhhHhhhccc--cc---hhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHH
Q 013970 56 GLWRNVTR-FLSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFS 129 (433)
Q Consensus 56 gl~~~l~~-~~pp~V~G~~i~lIGl~l~~~~~~~~--~~---~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLig 129 (433)
++.+|.++ ++.|+.+...+...-+.+...-.+.. ++ ++.++-.+..+.+=+.+..+.+.+ +..+++.+
T Consensus 10 ~l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~~------~~~~il~~ 83 (215)
T PF04172_consen 10 WLYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLKK------NWIPILVG 83 (215)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 34566655 45688777665554444444333222 12 234444444444333222222210 13467777
Q ss_pred HHHHHHHHHHH
Q 013970 130 VVIVWIYAHLL 140 (433)
Q Consensus 130 ivvG~~~a~~~ 140 (433)
+.+|.+++...
T Consensus 84 ~~~g~~~~~~~ 94 (215)
T PF04172_consen 84 VLVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHHH
Confidence 77777655444
No 42
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=20.69 E-value=5.3e+02 Score=27.28 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHH
Q 013970 41 SLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 73 (433)
Q Consensus 41 a~lvsGll~illg~~gl~~~l~~~~pp~V~G~~ 73 (433)
.+..+|++.+++|+++-+..+...+|..|.|.+
T Consensus 319 v~~~aa~ilillgl~PK~~alia~IP~pVlGg~ 351 (433)
T PRK11412 319 SFIYGSVMCLLVALIPALTRLFCSIPLPVSSAV 351 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456788999999998888999999998777655
No 43
>PRK11375 allantoin permease; Provisional
Probab=20.03 E-value=4.9e+02 Score=27.77 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHhhcCCC
Q 013970 372 SEPFVAGCVAFFLDNTLHKK 391 (433)
Q Consensus 372 sgi~~g~l~ai~Ln~~~~~~ 391 (433)
.|++++.+++.+|+..++++
T Consensus 456 ~g~iva~~~Y~~l~~~~~~~ 475 (484)
T PRK11375 456 VGVIVAFVAYALLKKRTTAE 475 (484)
T ss_pred HHHHHHHHHHHHHHhhCCCc
Confidence 46777888888877766654
Done!