Query 013970
Match_columns 433
No_of_seqs 192 out of 1617
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.4E-58 5E-63 478.2 24.6 335 1-401 69-419 (429)
2 3qe7_A Uracil permease; uracil 73.8 11 0.00037 38.3 9.0 76 226-302 45-131 (429)
3 1pw4_A Glycerol-3-phosphate tr 18.9 5.7E+02 0.02 23.9 10.3 16 264-279 90-105 (451)
4 1bts_A BAND 3 anion transport 14.5 43 0.0015 20.2 0.3 23 224-246 3-25 (26)
5 3hd6_A Ammonium transporter RH 13.9 90 0.0031 32.1 2.8 35 372-406 409-443 (490)
6 4gc0_A D-xylose-proton symport 7.1 1E+03 0.036 22.4 7.8 23 377-399 452-474 (491)
7 2b2h_A AMT-1, ammonium transpo 7.0 1.6E+02 0.0055 29.4 1.6 32 372-403 351-382 (399)
8 4f4l_A ION transport protein; 7.0 67 0.0023 25.9 -1.0 7 382-388 84-90 (112)
9 4b4a_A TATC, SEC-independent p 5.6 71 0.0024 29.8 -1.9 27 319-345 183-209 (249)
10 3o7q_A L-fucose-proton symport 5.3 1.6E+03 0.056 20.4 8.4 14 261-274 87-100 (438)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1.4e-58 Score=478.16 Aligned_cols=335 Identities=20% Similarity=0.328 Sum_probs=291.5
Q ss_pred CCCccccHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHHHHHHHHhh--hhH-HHHHHhcCcccHHHHHHHH
Q 013970 1 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLV 77 (433)
Q Consensus 1 ~G~Sfafl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGll~illg~~--gl~-~~l~~~~pp~V~G~~i~lI 77 (433)
||+||+|++|+.++.+ + +|++++|+++++|+++++++++ +++ +|++|+|||+|+|.++++|
T Consensus 69 ~G~sfafi~~~~~i~~-~---------------g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~I 132 (429)
T 3qe7_A 69 LGSSFAFISPVLLLLP-L---------------GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVI 132 (429)
T ss_dssp EEECGGGHHHHHHHGG-G---------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHH
T ss_pred ecChHHHHHHHHHHHh-c---------------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHH
Confidence 6899999999998875 2 5899999999999999999987 544 7999999999999999999
Q ss_pred HHHhhHhhhcccc-----------chhhhHHHHHHHHHHHHHhhhcccccCccccchhhHHHHHHHHHHHHHHHHhccCC
Q 013970 78 GFGLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY 146 (433)
Q Consensus 78 Gl~l~~~~~~~~~-----------~~~~i~l~~l~~~i~l~~~~~~~~~~~~~~l~~~siLigivvG~~~a~~~g~~~~~ 146 (433)
|+++++.++++.+ .++.+++.++++++++.++. |+++|++++|+|+++||++++.+|..
T Consensus 133 Gl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~-------kg~~~~~aiLigivvg~~~a~~~G~~--- 202 (429)
T 3qe7_A 133 GLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLF-------RGFLAIIPILIGVLVGYALSFAMGIV--- 202 (429)
T ss_dssp HHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHh-------cccchhhHHHHHHHHHHHHHHHhcCC---
Confidence 9999998876532 24568888888887776654 45678999999999999999999863
Q ss_pred CCCCcccccccccCcccccCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCccCCc
Q 013970 147 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR 226 (433)
Q Consensus 147 ~~~~~~~~~~~~vd~~~~v~~ap~~~~P~~~~~g~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~i~r 226 (433)
|++. +.++||+++|. |+.|+||++.+..++++++++++|++|++.++++.++++.+++++.||
T Consensus 203 -------------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r 265 (429)
T 3qe7_A 203 -------------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHR 265 (429)
T ss_dssp -------------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHH
T ss_pred -------------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcch
Confidence 5543 56789999995 577999999999999999999999999999999999865546789999
Q ss_pred cchhhhhHHHHhhhcCCCCCccccccchhhhhhccCCcchHHHHHHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHHHHHH
Q 013970 227 GVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAY 306 (433)
Q Consensus 227 ~l~~dGl~s~laglfG~~~~tt~~~en~g~i~~Tgv~SR~~~~~ag~~lillg~~Pk~~al~~~IP~~Vlgg~liv~fg~ 306 (433)
++++||++|+++|+||++|.|+|+ ||+|+++.||++||++...+|+++++++++||++++++.||.||+||+++++||+
T Consensus 266 ~l~adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~ 344 (429)
T 3qe7_A 266 SMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGV 344 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhh--hcCcCCCccceeehhhHHHhhhhhhhHhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHH
Q 013970 307 VGAGGLSFL--QFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFL 384 (433)
Q Consensus 307 i~~~Gi~~l--~~v~~~~~Rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~sgi~~g~l~ai~L 384 (433)
+..+|+|++ +++|++++||.+|+++++.+|++... +| ++.+..||+++|+++|++|
T Consensus 345 i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~l 402 (429)
T 3qe7_A 345 IGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGL 402 (429)
T ss_dssp HHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHH
Confidence 999999999 89999988999999999999997431 22 3567889999999999999
Q ss_pred HhhcCCCCcchhhcccc
Q 013970 385 DNTLHKKDGQVRKDRGR 401 (433)
Q Consensus 385 n~~~~~~~~~~~~~~~~ 401 (433)
|+++|++++.+++|..+
T Consensus 403 n~~l~~~~~~~~~~~~~ 419 (429)
T 3qe7_A 403 SLIFKLISVLRPEEVVL 419 (429)
T ss_dssp HHHHTCCC---------
T ss_pred HHHhcCccccCCcceEe
Confidence 99999875444443333
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=73.76 E-value=11 Score=38.28 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=47.4
Q ss_pred ccchhhhhHHHHhhhcCCCCCccccccchhhh----hhccCCcc----hHHHHHHHHHHHHHHh-hHH--HHHHHhCcHH
Q 013970 226 RGVGWQGVGILLSGLFGTVNGTSVSVENAGLL----ALTRVGSR----RVVQISAGFMIFFSVL-GKF--GAVFASIPAP 294 (433)
Q Consensus 226 r~l~~dGl~s~laglfG~~~~tt~~~en~g~i----~~Tgv~SR----~~~~~ag~~lillg~~-Pk~--~al~~~IP~~ 294 (433)
.++.+.|++|++=++++..+.-.+.+.|-..+ ...+ .+- -....+|++.++++++ .|+ ..+...+|..
T Consensus 45 ~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Ppv 123 (429)
T 3qe7_A 45 TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPA 123 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCe
Confidence 68888999999988876554322232343331 1112 221 1247778888888876 334 4789999988
Q ss_pred HHHHHHHH
Q 013970 295 IVAALYCL 302 (433)
Q Consensus 295 Vlgg~liv 302 (433)
|+|.....
T Consensus 124 viG~~i~~ 131 (429)
T 3qe7_A 124 AMGAIVAV 131 (429)
T ss_dssp HHHHHHHH
T ss_pred eeHHHHHH
Confidence 88876554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.91 E-value=5.7e+02 Score=23.89 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=6.7
Q ss_pred cchHHHHHHHHHHHHH
Q 013970 264 SRRVVQISAGFMIFFS 279 (433)
Q Consensus 264 SR~~~~~ag~~lillg 279 (433)
+|+.....+.++..++
T Consensus 90 g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAV 105 (451)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 3444444444433333
No 4
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=14.55 E-value=43 Score=20.20 Aligned_cols=23 Identities=22% Similarity=0.136 Sum_probs=17.1
Q ss_pred CCccchhhhhHHHHhhhcCCCCC
Q 013970 224 LSRGVGWQGVGILLSGLFGTVNG 246 (433)
Q Consensus 224 i~r~l~~dGl~s~laglfG~~~~ 246 (433)
+++.+++++++.++-++|++-|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 45678899999999999998774
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=13.94 E-value=90 Score=32.15 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=24.2
Q ss_pred ccchhHHHHHHHHHhhcCCCCcchhhccccccccc
Q 013970 372 SEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDK 406 (433)
Q Consensus 372 sgi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~~~~ 406 (433)
-.+..+.++..+||......-.+++|.+|++-|+-
T Consensus 409 ~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~ 443 (490)
T 3hd6_A 409 MALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEM 443 (490)
T ss_dssp HHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCC
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeec
Confidence 45666777888888876655455567778777755
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=7.13 E-value=1e+03 Score=22.44 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCCCCcchhhcc
Q 013970 377 AGCVAFFLDNTLHKKDGQVRKDR 399 (433)
Q Consensus 377 g~l~ai~Ln~~~~~~~~~~~~~~ 399 (433)
+.+.+++.-.++||+|+++.||=
T Consensus 452 ~~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCHHHH
T ss_pred HHHHHHHHHheecCCCCCCHHHH
Confidence 34444555567899988876663
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=6.97 E-value=1.6e+02 Score=29.39 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHHhhcCCCCcchhhcccccc
Q 013970 372 SEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHW 403 (433)
Q Consensus 372 sgi~~g~l~ai~Ln~~~~~~~~~~~~~~~~~~ 403 (433)
-....+.++..++|.+.+.+-.+++|++|++.
T Consensus 351 ~~~v~~~i~~~il~~~~glRv~~e~E~~GlD~ 382 (399)
T 2b2h_A 351 YAFLVTLILAKAVDAAVGLRVSSQEEYVGLDL 382 (399)
T ss_dssp HHHHHHHHHHHHHHHHTCSBCCHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHhCCCH
Confidence 35566777778888877655556668888755
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=6.95 E-value=67 Score=25.87 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.8
Q ss_pred HHHHhhc
Q 013970 382 FFLDNTL 388 (433)
Q Consensus 382 i~Ln~~~ 388 (433)
++||+++
T Consensus 84 i~lNLfi 90 (112)
T 4f4l_A 84 TVLNLFI 90 (112)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4555554
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.55 E-value=71 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=18.1
Q ss_pred cCCCccceeehhhHHHhhhhhhhHhhh
Q 013970 319 NLNSFRVKFILGFSIFIGLSVPQYFNE 345 (433)
Q Consensus 319 ~~~~~Rn~~ivg~sl~~Gl~~p~~~~~ 345 (433)
.+.+.|+..+++.-+...+.-||.+++
T Consensus 183 ~l~~~Rr~~iv~~~v~aAiiTPD~~sq 209 (249)
T 4b4a_A 183 QLASFRKYFIVIAFVIGAIIAPDVSTQ 209 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHCCcHHHH
Confidence 333567878888777776666766655
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=5.27 E-value=1.6e+03 Score=20.42 Aligned_cols=14 Identities=0% Similarity=-0.036 Sum_probs=6.2
Q ss_pred cCCcchHHHHHHHH
Q 013970 261 RVGSRRVVQISAGF 274 (433)
Q Consensus 261 gv~SR~~~~~ag~~ 274 (433)
+...|++...+.++
T Consensus 87 r~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 87 KLSYKAGIITGLFL 100 (438)
T ss_dssp HSCHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHH
Confidence 34445554444433
Done!