Query 013970
Match_columns 433
No_of_seqs 192 out of 1617
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 03:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 45.2 57 0.0041 28.6 10.5 19 184-202 22-40 (447)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 3.7 3.6E+02 0.027 14.9 2.4 15 124-138 12-26 (32)
3 d1cixa_ g.3.6.2 (A:) Tachystat 3.3 1.8E+02 0.013 17.4 0.8 10 416-425 12-21 (44)
4 d1eu3a1 b.40.2.2 (A:2A-96) Str 2.5 1.7E+02 0.012 21.1 0.1 37 394-431 40-81 (97)
5 d1gjwa1 b.71.1.1 (A:573-636) M 2.5 79 0.0057 20.8 -1.6 19 395-415 33-51 (64)
6 d2o35a1 a.293.1.1 (A:2-80) Hyp 2.4 58 0.0043 23.1 -2.6 14 411-424 61-74 (79)
7 d3seba1 b.40.2.2 (A:1-121) Sta 2.4 2.5E+02 0.018 21.3 0.9 19 414-432 79-97 (121)
8 d2iuba2 f.17.3.1 (A:286-349) M 2.1 5.9E+02 0.043 16.0 2.7 39 7-47 16-54 (64)
9 d1cola_ f.1.1.1 (A:) Colicin A 2.0 1.4E+03 0.11 17.9 5.6 13 287-299 159-171 (197)
10 d3cx5c1 f.32.1.1 (C:262-385) M 2.0 1.1E+03 0.081 16.9 4.5 41 284-325 17-57 (124)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=45.22 E-value=57 Score=28.59 Aligned_cols=19 Identities=0% Similarity=-0.096 Sum_probs=9.5
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q 013970 184 FDAGEAFAMMMASFVALVE 202 (433)
Q Consensus 184 f~~~~i~~~~~~~lv~~~e 202 (433)
..|..+...+..++....+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~ 40 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLV 40 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.66 E-value=3.6e+02 Score=14.86 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHH
Q 013970 124 FAVIFSVVIVWIYAH 138 (433)
Q Consensus 124 ~siLigivvG~~~a~ 138 (433)
.+...|+.+|.+.++
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 356677777776553
No 3
>d1cixa_ g.3.6.2 (A:) Tachystatin {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=3.31 E-value=1.8e+02 Score=17.39 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=7.5
Q ss_pred ccccccCCcc
Q 013970 416 SEEFYSLPFN 425 (433)
Q Consensus 416 ~~~~~~~~~~ 425 (433)
+.+.||||+-
T Consensus 12 vvrsyglpti 21 (44)
T d1cixa_ 12 VVRSYGLPTI 21 (44)
T ss_dssp CSCCTTSCSC
T ss_pred EEEccCCCCc
Confidence 4577999973
No 4
>d1eu3a1 b.40.2.2 (A:2A-96) Streptococcal superantigen Smez-2 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.54 E-value=1.7e+02 Score=21.12 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=20.0
Q ss_pred chhhcccccccccccc-----cCCCCCccccccCCccCccCCC
Q 013970 394 QVRKDRGRHWWDKFWS-----FKGDTRSEEFYSLPFNLNKYFP 431 (433)
Q Consensus 394 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 431 (433)
+.|++|.+..-++-.. ...++ +.++||||+..+-.++
T Consensus 40 ~~r~~~~~yvdSevs~~~t~~F~kgD-kVdVFglp~~~~Yi~~ 81 (97)
T d1eu3a1 40 DVRDARDFFINSEMDEYAANDFKTGD-KIAVFSVPFDWNYLSK 81 (97)
T ss_dssp EEETTEEEEEEEECCHHHHTTCCTTC-EEEEEECEEEEECCST
T ss_pred hccccceEEEehhhhhhhhhccccCC-EEEEEecccchhhccc
Confidence 3456666665433211 22223 3347999988775554
No 5
>d1gjwa1 b.71.1.1 (A:573-636) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=2.50 E-value=79 Score=20.78 Aligned_cols=19 Identities=11% Similarity=0.461 Sum_probs=12.2
Q ss_pred hhhcccccccccccccCCCCC
Q 013970 395 VRKDRGRHWWDKFWSFKGDTR 415 (433)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~ 415 (433)
.+|-.|=+.|+. .|+++++
T Consensus 33 ~keitggrvw~g--kw~d~ek 51 (64)
T d1gjwa1 33 PKEITGGRVWNG--KWSDEEK 51 (64)
T ss_dssp CEEEEEEEEESS--SEEEEEE
T ss_pred cccccCceeecC--cccccce
Confidence 466677888988 3544444
No 6
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=2.42 E-value=58 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=10.1
Q ss_pred CCCCCccccccCCc
Q 013970 411 KGDTRSEEFYSLPF 424 (433)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (433)
+.|+..+.+||.|.
T Consensus 61 ~~d~ARe~vYGMpy 74 (79)
T d2o35a1 61 SKEESREIVYGMPY 74 (79)
T ss_dssp CHHHHHHHHHSSCH
T ss_pred CHHHHHHHHhCCCH
Confidence 44566677999986
No 7
>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]}
Probab=2.36 E-value=2.5e+02 Score=21.25 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=16.2
Q ss_pred CCccccccCCccCccCCCC
Q 013970 414 TRSEEFYSLPFNLNKYFPS 432 (433)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (433)
.+..++||.+..-.|+|++
T Consensus 79 ~K~VDIyG~~Y~~~C~~~~ 97 (121)
T d3seba1 79 DKYVDVFGANYYYQCYFSK 97 (121)
T ss_dssp TSEEEEEECCBCTTCCCCC
T ss_pred CCeeeEecccceeEEEecc
Confidence 5667899999999999875
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.13 E-value=5.9e+02 Score=16.01 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=12.7
Q ss_pred cHHHHHHHHhccCCCCCCCCChhhHhhhHHHHHHHHHHHHH
Q 013970 7 FVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVAST 47 (433)
Q Consensus 7 fl~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~ga~lvsGl 47 (433)
|+|+ ..+.+-||= |..+-++..|++++..+.+..+...+
T Consensus 16 flP~-t~i~gifGM-N~~~~P~~~~~~~~~~~~~~~~~~~~ 54 (64)
T d2iuba2 16 FMPL-TFIAGIYGM-NFEYMPELRWKWGYPVVLAVMGVIAV 54 (64)
T ss_dssp HHHH-HHHTTSCC---------------CHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhhcc-CCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3444 334444542 22223455667777666666554443
No 9
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=2.04 E-value=1.4e+03 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=7.0
Q ss_pred HHHhCcHHHHHHH
Q 013970 287 VFASIPAPIVAAL 299 (433)
Q Consensus 287 l~~~IP~~Vlgg~ 299 (433)
+...+|.-.+|=+
T Consensus 159 ~~~g~~~~~iGI~ 171 (197)
T d1cola_ 159 LSLGVPAIAVGIA 171 (197)
T ss_dssp HHCCSCHHHHHHH
T ss_pred HHccccccHHHHH
Confidence 4445675555533
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.96 E-value=1.1e+03 Score=16.92 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=22.3
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHhhhhhhhcCcCCCccc
Q 013970 284 FGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRV 325 (433)
Q Consensus 284 ~~al~~~IP~~Vlgg~liv~fg~i~~~Gi~~l~~v~~~~~Rn 325 (433)
+-+++.+||.-..|-+.++ .+.+...-+-.+.+.+..+.|.
T Consensus 17 ~YaiLRsiP~k~~Gvl~~~-~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDKLLGVITMF-AAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSHHHHHHHHH-HHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcchhhhHHHH-HHHHHHHHHHHHhhhhhhhcch
Confidence 5678999998865544443 3444443444444444443343
Done!