Query 013971
Match_columns 433
No_of_seqs 162 out of 197
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 00:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2625 Uncharacterized conser 100.0 6.2E-94 1.4E-98 661.3 8.7 332 87-428 1-339 (348)
2 PF06159 DUF974: Protein of un 100.0 1.1E-69 2.4E-74 525.3 27.6 233 88-320 1-248 (249)
3 PF07919 Gryzun: Gryzun, putat 99.9 5.4E-22 1.2E-26 212.4 34.1 313 88-419 177-554 (554)
4 KOG4386 Uncharacterized conser 99.5 4.8E-15 1E-19 151.7 -0.5 293 101-420 448-778 (809)
5 PF12735 Trs65: TRAPP traffick 98.9 2.5E-07 5.4E-12 92.8 20.8 101 327-430 157-300 (306)
6 PF08626 TRAPPC9-Trs120: Trans 98.3 0.00056 1.2E-08 80.3 30.6 301 90-403 788-1184(1185)
7 PF12742 Gryzun-like: Gryzun, 97.8 8.8E-05 1.9E-09 55.3 6.2 50 362-417 8-57 (57)
8 PF12584 TRAPPC10: Trafficking 97.7 0.00073 1.6E-08 60.7 12.3 80 336-421 24-114 (147)
9 PF07705 CARDB: CARDB; InterP 96.9 0.014 3E-07 47.6 10.5 79 326-413 2-80 (101)
10 PF00927 Transglut_C: Transglu 96.7 0.0039 8.5E-08 52.6 6.1 72 333-410 5-82 (107)
11 PF07919 Gryzun: Gryzun, putat 96.1 1.1 2.3E-05 48.4 22.0 220 194-413 10-276 (554)
12 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.072 1.6E-06 42.2 6.5 73 99-175 3-78 (78)
13 PF14874 PapD-like: Flagellar- 94.5 0.43 9.3E-06 39.4 9.8 73 93-172 12-86 (102)
14 PF07705 CARDB: CARDB; InterP 93.9 0.12 2.5E-06 42.1 5.2 77 93-176 11-87 (101)
15 PF05753 TRAP_beta: Translocon 93.3 1.3 2.8E-05 41.2 11.5 81 335-418 30-111 (181)
16 PF10633 NPCBM_assoc: NPCBM-as 90.3 0.9 1.9E-05 35.9 6.0 59 340-404 2-60 (78)
17 PF05753 TRAP_beta: Translocon 88.0 3.7 8E-05 38.3 9.1 81 98-179 35-117 (181)
18 PF11797 DUF3324: Protein of u 87.4 4 8.7E-05 36.2 8.8 93 95-191 33-130 (140)
19 PF00207 A2M: Alpha-2-macroglo 86.0 4.1 8.9E-05 33.2 7.5 42 323-366 51-92 (92)
20 smart00809 Alpha_adaptinC2 Ada 86.0 11 0.00024 31.0 10.2 74 100-177 17-90 (104)
21 PF02883 Alpha_adaptinC2: Adap 85.5 18 0.00038 30.4 11.5 74 99-177 22-101 (115)
22 PF14874 PapD-like: Flagellar- 85.5 7 0.00015 32.0 8.8 66 338-411 15-81 (102)
23 PF13584 BatD: Oxygen toleranc 82.3 72 0.0016 33.8 27.6 93 326-426 271-370 (484)
24 PF00927 Transglut_C: Transglu 81.4 2.5 5.4E-05 35.3 4.5 75 95-171 9-87 (107)
25 PF06159 DUF974: Protein of un 75.1 13 0.00029 36.3 8.0 76 339-414 10-87 (249)
26 KOG3865 Arrestin [Signal trans 75.1 8.4 0.00018 38.8 6.6 32 98-129 207-238 (402)
27 PF00635 Motile_Sperm: MSP (Ma 75.0 11 0.00025 30.9 6.6 54 343-406 18-71 (109)
28 PF06030 DUF916: Bacterial pro 70.0 26 0.00056 30.4 7.8 59 342-402 26-101 (121)
29 KOG3865 Arrestin [Signal trans 66.5 35 0.00076 34.5 8.7 90 324-417 191-289 (402)
30 PF14796 AP3B1_C: Clathrin-ada 63.2 17 0.00037 32.7 5.5 71 309-400 66-136 (145)
31 KOG3317 Translocon-associated 62.1 63 0.0014 29.9 8.8 73 342-417 41-114 (188)
32 PF14524 Wzt_C: Wzt C-terminal 62.1 55 0.0012 27.7 8.5 94 97-194 31-130 (142)
33 PF03896 TRAP_alpha: Transloco 59.8 1.1E+02 0.0023 30.8 10.9 92 87-180 85-183 (285)
34 TIGR03769 P_ac_wall_RPT actino 59.3 23 0.0005 24.8 4.4 35 158-192 7-41 (41)
35 PF06280 DUF1034: Fn3-like dom 59.2 89 0.0019 26.1 9.0 80 341-422 6-103 (112)
36 PF11614 FixG_C: IG-like fold 59.1 39 0.00084 28.6 6.8 76 323-406 6-86 (118)
37 COG1361 S-layer domain [Cell e 58.8 2.5E+02 0.0055 29.9 16.4 148 86-237 152-312 (500)
38 PF09624 DUF2393: Protein of u 54.7 85 0.0019 27.7 8.6 73 99-171 60-145 (149)
39 PF13584 BatD: Oxygen toleranc 54.4 2E+02 0.0044 30.4 12.9 130 270-418 72-220 (484)
40 PF01345 DUF11: Domain of unkn 53.8 22 0.00047 27.6 4.1 33 94-126 34-66 (76)
41 KOG1931 Putative transmembrane 48.4 32 0.0007 39.9 5.7 48 374-421 1079-1126(1156)
42 PF14796 AP3B1_C: Clathrin-ada 46.8 55 0.0012 29.5 5.9 80 78-162 63-142 (145)
43 PF12690 BsuPI: Intracellular 45.3 1.2E+02 0.0026 24.4 7.1 27 144-170 54-82 (82)
44 TIGR01451 B_ant_repeat conserv 44.7 41 0.00089 24.6 4.0 31 97-127 8-38 (53)
45 PF12735 Trs65: TRAPP traffick 41.7 2.9E+02 0.0062 27.8 10.9 45 143-187 257-301 (306)
46 COG1470 Predicted membrane pro 40.5 5E+02 0.011 28.0 18.2 58 339-402 393-450 (513)
47 PF00630 Filamin: Filamin/ABP2 40.3 1.9E+02 0.0041 23.1 8.4 67 97-172 17-90 (101)
48 PF15146 FANCAA: Fanconi anemi 35.1 66 0.0014 33.7 5.1 83 328-414 59-149 (435)
49 COG5066 SCS2 VAMP-associated p 34.9 1.3E+02 0.0028 28.9 6.5 80 340-431 10-93 (242)
50 PF14524 Wzt_C: Wzt C-terminal 34.5 1.1E+02 0.0023 26.0 5.8 88 337-431 29-122 (142)
51 PF14728 PHTB1_C: PTHB1 C-term 33.4 2.1E+02 0.0045 29.8 8.6 80 106-189 2-84 (377)
52 KOG1366 Alpha-macroglobulin [P 32.7 9.9E+02 0.021 29.6 15.0 77 296-381 733-809 (1436)
53 PF01345 DUF11: Domain of unkn 32.0 1.6E+02 0.0035 22.6 5.9 46 321-368 19-64 (76)
54 PF13473 Cupredoxin_1: Cupredo 31.5 1.5E+02 0.0032 24.3 6.0 57 335-411 33-89 (104)
55 PF11906 DUF3426: Protein of u 31.2 1.7E+02 0.0036 25.7 6.6 64 341-404 66-136 (149)
56 TIGR00192 urease_beta urease, 29.6 1.4E+02 0.0031 25.2 5.3 64 346-414 21-92 (101)
57 PF00207 A2M: Alpha-2-macroglo 29.3 1.8E+02 0.004 23.3 6.0 37 189-225 49-88 (92)
58 TIGR02745 ccoG_rdxA_fixG cytoc 28.9 2.5E+02 0.0054 29.8 8.4 89 324-421 322-419 (434)
59 PF08033 Sec23_BS: Sec23/Sec24 28.7 1.1E+02 0.0023 25.0 4.5 39 143-181 44-84 (96)
60 PF02752 Arrestin_C: Arrestin 28.7 87 0.0019 26.2 4.2 28 97-124 16-43 (136)
61 PRK13202 ureB urease subunit b 28.6 1.4E+02 0.003 25.3 5.1 66 345-415 21-94 (104)
62 PF02757 YLP: YLP motif; Inte 25.7 33 0.00071 16.5 0.5 7 427-433 3-9 (9)
63 PRK13736 conjugal transfer pro 25.3 1E+02 0.0022 30.1 4.4 55 335-400 176-235 (245)
64 COG1470 Predicted membrane pro 25.0 5.9E+02 0.013 27.4 10.1 72 339-412 280-354 (513)
65 PF11611 DUF4352: Domain of un 24.8 2.3E+02 0.005 23.4 6.1 70 101-170 36-112 (123)
66 PRK13201 ureB urease subunit b 24.7 1.6E+02 0.0036 26.0 5.0 63 347-414 22-92 (136)
67 PF09478 CBM49: Carbohydrate b 24.3 3.2E+02 0.0069 21.5 6.4 23 345-367 19-41 (80)
68 TIGR03517 GldM_gliding gliding 23.0 4.9E+02 0.011 28.4 9.4 81 93-195 242-322 (523)
69 PF00345 PapD_N: Pili and flag 22.9 4E+02 0.0087 22.3 7.3 50 346-400 17-70 (122)
70 COG2847 Copper(I)-binding prot 22.8 4.6E+02 0.0099 23.8 7.7 89 104-203 44-141 (151)
71 PF03944 Endotoxin_C: delta en 22.4 2E+02 0.0044 25.3 5.4 26 209-234 117-143 (143)
72 PRK13204 ureB urease subunit b 22.3 1.8E+02 0.004 26.4 5.0 23 389-414 93-115 (159)
73 KOG1953 Targeting complex (TRA 21.1 2.6E+02 0.0056 32.9 6.9 69 340-418 690-761 (1235)
74 KOG1163 Casein kinase (serine/ 20.8 67 0.0014 31.9 2.1 33 93-136 27-59 (341)
75 PRK13198 ureB urease subunit b 20.4 2.1E+02 0.0045 26.0 4.9 24 389-415 98-121 (158)
76 TIGR02588 conserved hypothetic 20.2 5.9E+02 0.013 22.3 8.3 34 100-133 48-81 (122)
No 1
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.2e-94 Score=661.34 Aligned_cols=332 Identities=31% Similarity=0.556 Sum_probs=308.0
Q ss_pred cccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccce
Q 013971 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH 166 (433)
Q Consensus 87 ~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h 166 (433)
+|.+||.||+|||||||++||+++|+|++.|++|.+|+||||.+||+.|... ...+.+++|.++.+.||+||+||+|+|
T Consensus 1 ~l~~pq~f~niflgetfs~yinv~nds~k~v~~i~lk~dlqtssqrl~l~~s-~~~~aei~~~~c~~~vi~hevkeig~h 79 (348)
T KOG2625|consen 1 MLIAPQMFENIFLGETFSFYINVHNDSEKTVKDILLKADLQTSSQRLNLPAS-NAAAAEIEPDCCEDDVIHHEVKEIGQH 79 (348)
T ss_pred CccchhhhcceeeccceEEEEEEecchhhhhhhheeeecccccceeeccccc-hhhhhhcCccccchhhhhHHHHhhccE
Confidence 4789999999999999999999999999999999999999999999999643 244668999999999999999999999
Q ss_pred EEEEEEEEEcCCCceeecCeeEEEEeecCeEEEEEEEEe-------CCeeEEEEEEEecCcccEEEEeEEeeecCCccee
Q 013971 167 TLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV-------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSAT 239 (433)
Q Consensus 167 ~L~c~V~Y~~~~ge~~~frK~ykF~v~~Pl~VrTK~~~~-------~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~ 239 (433)
+|+|+|+|++.+||.++|||||||+|.+|++||||||++ .+++||||||||+|..+|+||+|+|+|+.+|.++
T Consensus 80 ilicavny~tq~ge~myfrkffkf~v~kpidvktkfynaesdlssv~~dvfleaqien~s~a~mflekv~ldps~~ynvt 159 (348)
T KOG2625|consen 80 ILICAVNYKTQAGEKMYFRKFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLEAQIENMSNANMFLEKVELDPSIHYNVT 159 (348)
T ss_pred EEEEEEeeeccCccchhHHhhccccccccccccceeecccccccccchhhhhhhhhhcccccchhhhhhccCchheecce
Confidence 999999999999999999999999999999999999986 5789999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeee
Q 013971 240 MLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQIL 319 (433)
Q Consensus 240 ~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~ 319 (433)
+++.+.+.++..++ |.. ..+++|.|+|||||||+||.+..++..-.++.+.+|||||.||++|||+||||||+|+
T Consensus 160 ~i~~~~e~gdcvst----fg~-~~~lkp~d~rq~l~cl~pk~d~~~~~gi~k~lt~igkldi~wktnlgekgrlqts~lq 234 (348)
T KOG2625|consen 160 EIAHEDEAGDCVST----FGS-GALLKPKDIRQFLFCLKPKADFAEKAGIIKDLTSIGKLDISWKTNLGEKGRLQTSALQ 234 (348)
T ss_pred eecchhhccccccc----ccc-ccccCccchhhheeecCchHHHHHhhccccccceeeeeEEEeeccccccccchHHHHH
Confidence 99888777665443 332 2346789999999999999877645555678899999999999999999999999999
Q ss_pred eccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEE
Q 013971 320 GTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFH 399 (433)
Q Consensus 320 ~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~ 399 (433)
|.+|+++|++|+++.+|+.|.+++||.++|+|+|+|+|.|+ |.+.|++.. ..-++|||+++++||+|.|.+...|.
T Consensus 235 riapgygdvrlsle~~p~~vdleepf~iscki~ncserald-l~l~l~~~n---nrhi~~c~~sg~qlgkl~ps~~l~~a 310 (348)
T KOG2625|consen 235 RIAPGYGDVRLSLEAIPACVDLEEPFEISCKITNCSERALD-LQLELCNPN---NRHIHFCGISGRQLGKLHPSQHLCFA 310 (348)
T ss_pred hhcCCCCceEEEeeccccccccCCCeEEEEEEcccchhhhh-hhhhhcCCC---CceeEEeccccccccCCCCcceeeeE
Confidence 99999999999999999999999999999999999999999 999998864 35799999999999999999999999
Q ss_pred EEEEecccceEEeCceEEEeCCCCeEEee
Q 013971 400 LNLIATKLGVQRITGITVFDKLEKITYDS 428 (433)
Q Consensus 400 L~l~pl~~Glq~isgI~l~D~~~~~~y~~ 428 (433)
|+++|...|+|+|+||+|+|+++||+|||
T Consensus 311 l~l~~~~~giqsisgiritdtf~kr~ye~ 339 (348)
T KOG2625|consen 311 LNLFPSTQGIQSISGIRITDTFLKRIYEH 339 (348)
T ss_pred EeeccchhcceeecceEeehhhhhhhhcc
Confidence 99999999999999999999999999997
No 2
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=100.00 E-value=1.1e-69 Score=525.30 Aligned_cols=233 Identities=44% Similarity=0.709 Sum_probs=206.2
Q ss_pred ccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCc--eeeccCCCCC--CccccCCCCeeeEEEEEEcccc
Q 013971 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ--RILLLDTSKS--PVESIRAGGRYDFIVEHDVKEL 163 (433)
Q Consensus 88 L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~--r~~L~~~~~~--~~~~L~pg~~ld~iv~~~lke~ 163 (433)
|+||+|||+|||||||+||||+||+++++|++|.|||||||+++ |+.|.++... ++.+|+||+++|+||+|+|||+
T Consensus 1 L~LP~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~ 80 (249)
T PF06159_consen 1 LTLPQSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKEL 80 (249)
T ss_pred CCCCcccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeec
Confidence 78999999999999999999999999999999999999999999 9999765544 5678999999999999999999
Q ss_pred cceEEEEEEEEEcC---CCceeecCeeEEEEeecCeEEEEEEEEeCC--------eeEEEEEEEecCcccEEEEeEEeee
Q 013971 164 GAHTLVCTALYSDG---EGERKYLPQFFKFIVSNPLSVRTKVRVVKE--------ITFLEACIENHTKSNLYMDQVEFEP 232 (433)
Q Consensus 164 G~h~L~c~V~Y~~~---~ge~~~frK~ykF~v~~Pl~VrTK~~~~~~--------~~~LEaqiqN~s~~pl~le~v~lep 232 (433)
|+|+|+|+|+|+++ +||+|+|||||||+|.+||+||||++++.+ ++||||||||+|+.||+||+|+|+|
T Consensus 81 G~h~L~c~VsY~~~~~~~g~~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep 160 (249)
T PF06159_consen 81 GNHTLVCTVSYTDPTETSGERRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEP 160 (249)
T ss_pred CceEEEEEEEEecCcccCCccceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEEEEEEEEecCCCceEEEEEEeec
Confidence 99999999999999 999999999999999999999999999976 9999999999999999999999999
Q ss_pred cCCcceeeecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCee
Q 013971 233 SQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGR 312 (433)
Q Consensus 233 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~ 312 (433)
.++|++.++||+....+.......+......+++|+|+|||+|||+++.+........++.+.+|||+|.||++|||+||
T Consensus 161 ~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge~Gr 240 (249)
T PF06159_consen 161 SPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGERGR 240 (249)
T ss_pred CCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCCCce
Confidence 99999999998765433221111111122345789999999999999987333455678899999999999999999999
Q ss_pred eeEEeeee
Q 013971 313 LQTQQILG 320 (433)
Q Consensus 313 L~Ts~l~~ 320 (433)
|||++|+|
T Consensus 241 LqT~~L~r 248 (249)
T PF06159_consen 241 LQTSQLQR 248 (249)
T ss_pred eehhhccc
Confidence 99999986
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.91 E-value=5.4e-22 Score=212.42 Aligned_cols=313 Identities=17% Similarity=0.234 Sum_probs=229.8
Q ss_pred ccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeC--------C-Cceee-c--cC-------CCCCCccccCC
Q 013971 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT--------D-KQRIL-L--LD-------TSKSPVESIRA 148 (433)
Q Consensus 88 L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT--------~-s~r~~-L--~~-------~~~~~~~~L~p 148 (433)
+.+|..-+-+|+||.+..-|.|.|+..... ++.+.+.+.. . ..... . .+ ....+++.|.+
T Consensus 177 I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~ 255 (554)
T PF07919_consen 177 IKLPNHKPPALTGEFYPIPITISNNEDEEA-SGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAP 255 (554)
T ss_pred EEeCCCCCCeEcCCEEEEEEEEEcCCCccc-eeEEEEEEecccccccccccCccceecccccccccchhccCcccccCCC
Confidence 455678889999999999999999975543 3444455541 0 11110 0 00 01234678999
Q ss_pred CCeeeEEEEEEcccccceEEEEEEEEEc--C-CCcee-ecCeeEEEEeecCe----EEEEEEEE----------------
Q 013971 149 GGRYDFIVEHDVKELGAHTLVCTALYSD--G-EGERK-YLPQFFKFIVSNPL----SVRTKVRV---------------- 204 (433)
Q Consensus 149 g~~ld~iv~~~lke~G~h~L~c~V~Y~~--~-~ge~~-~frK~ykF~v~~Pl----~VrTK~~~---------------- 204 (433)
|++....++......|.+.|.+++.|.. . +.... +-.+-+++.+.+|| ++.++++.
T Consensus 256 ~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~~~~~~l~~~~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~ 335 (554)
T PF07919_consen 256 GSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISKTKTVQLPVINPFEANYDFSPRFHPDPWDMPSPFDVDGSSD 335 (554)
T ss_pred CCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEEeEEEeeeEEcCEEeeeeEEeeeccCCccCCcccccccccc
Confidence 9999999999999999999999999974 2 22222 33344999999999 66666642
Q ss_pred ------------------eCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCcccccccCCceEEeC
Q 013971 205 ------------------VKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRS 266 (433)
Q Consensus 205 ------------------~~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~ 266 (433)
.+.+++|.++++|.++++|.|++++|+.................. . ......++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~~~~~~~~~~~~~~------~--~~~~~~l~ 407 (554)
T PF07919_consen 336 FQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSNGGASCDVSSEDSS------S--PESGTVLQ 407 (554)
T ss_pred cccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCCCceeeeecccccc------C--CCccceeC
Confidence 235689999999999999999999999766444332111110000 0 00022345
Q ss_pred CCCeeeEEEEEe--ecCCCCCCCccccCceeeEEEEEEEEc-CCCCCeeeeEEeeeeccCccCCeEEEE-EecCceEEeC
Q 013971 267 GGGIHNYLYQLK--MLSHGSSSPVKVQGSNVLGKLQITWRT-NLGEPGRLQTQQILGTTITSKEIELNV-VEVPSVVGID 342 (433)
Q Consensus 267 ~gd~~q~lf~L~--p~~~~~~~~~~~~g~~~lG~L~I~WRs-~~Ge~G~L~Ts~l~~~~~~~~dl~l~v-~~~P~~v~v~ 342 (433)
+++.+...||+. ..... .........+|.|.|+||| ..+..+...++.+..+.....+.++.| +++|+...++
T Consensus 408 ~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~g~~~I~WrR~~~~s~~~~~~t~l~lP~~~v~~~~~~v~~~~p~~~~~~ 484 (554)
T PF07919_consen 408 PGECREDQFCLRLDVQKLS---LDDRRNVTLLGSLVIKWRRNSSNSSDPVVTTPLPLPRVNVPSSPLRVLASVPPSAIVG 484 (554)
T ss_pred ccccccccccccccccccc---cccCccceeEEEEEEEEEECCCCCCCceEEEEeecCceEccCCCcEEEEecCCccccC
Confidence 678887777743 21110 1112346889999999999 566667888888887776666666666 7889999999
Q ss_pred CcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEe
Q 013971 343 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFD 419 (433)
Q Consensus 343 ~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D 419 (433)
.||++.|+|+|+|.+.+. +.+.|+.++ +|+++|.+...+ .|.|+++.++.++|+|+.+|++.+|.++|.|
T Consensus 485 ~~~~l~~~I~N~T~~~~~-~~~~me~s~-----~F~fsG~k~~~~-~llP~s~~~~~y~l~pl~~G~~~lP~l~v~d 554 (554)
T PF07919_consen 485 EPFTLSYTIENPTNHFQT-FELSMEPSD-----DFMFSGPKQTTF-SLLPFSRHTVRYNLLPLVAGWWILPRLKVRD 554 (554)
T ss_pred cEEEEEEEEECCCCccEE-EEEEEccCC-----CEEEECCCcCce-EECCCCcEEEEEEEEEccCCcEECCcEEEeC
Confidence 999999999999999998 999998875 699999999999 5999999999999999999999999999987
No 4
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.8e-15 Score=151.73 Aligned_cols=293 Identities=18% Similarity=0.191 Sum_probs=192.6
Q ss_pred ceeeEEEEEEcCCCCceeeEEEEEEEeCCCc-----eee-------cc-C-----CCCCCccccCCCCeeeEEEEEEccc
Q 013971 101 ETFCSYISINNSSTLEVRDVVIKAEIQTDKQ-----RIL-------LL-D-----TSKSPVESIRAGGRYDFIVEHDVKE 162 (433)
Q Consensus 101 EtF~~~i~v~N~s~~~v~~V~ikvelqT~s~-----r~~-------L~-~-----~~~~~~~~L~pg~~ld~iv~~~lke 162 (433)
|.+..++.+.-.....+.++..||++..+.. |.+ +. + ....++..+-+|+......+-+.--
T Consensus 448 E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT~rn~~k~~~~~~~~d~~~~~~k~~~a~~v~~~EQ~~Kmlyvrcgt 527 (809)
T KOG4386|consen 448 ENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLTIRNTCKSSPIHGLLDFKRKEQKHAEAAAVLFVEQELKMLYVRCGT 527 (809)
T ss_pred heEEEEEEeeechhhhhhhhhhhcCcccccccceeeecccccCCchhhhhhhhHhhccCchhhcchHHHHHHHHHHhhhh
Confidence 4444455555554555566666666655431 110 00 0 0012333444555433333333334
Q ss_pred ccceEEEEEEEEEcCC-------------CceeecCeeEEEEeecCeEEEEEEEEeCC-----eeEEEEEEEecCcccEE
Q 013971 163 LGAHTLVCTALYSDGE-------------GERKYLPQFFKFIVSNPLSVRTKVRVVKE-----ITFLEACIENHTKSNLY 224 (433)
Q Consensus 163 ~G~h~L~c~V~Y~~~~-------------ge~~~frK~ykF~v~~Pl~VrTK~~~~~~-----~~~LEaqiqN~s~~pl~ 224 (433)
+|-...-+.|+|-..+ -+.++.--.|-|.|.-||-+ |||..+.+ .+.+...+--.++|.+.
T Consensus 528 vgsrmflvyvsyLinttVeekeivckchkdeTvtietvfpfdvavkFvs-tkfehlervyadIpfllmtdLlsaspwAlt 606 (809)
T KOG4386|consen 528 VGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVS-TKFEHLERVYADIPFLLMTDLLSASPWALT 606 (809)
T ss_pred hccchhhHHHHHHhhhHHHHhhHhhhccccceEEEEEEeeeeeeeeeeh-hhhhhccChhhhhhHHHHHHHhhhchHHHH
Confidence 4444444455665431 23445555577777777765 77766644 12233333344577666
Q ss_pred EEeEEeeecCCcceeeecCCCCCCCCCcccccccCCceEEeCCCCeeeEEEEEeecCCCCCCCccccCceeeEEEEEEEE
Q 013971 225 MDQVEFEPSQNWSATMLKADGPHSDYNAQSREIFKPPVLIRSGGGIHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWR 304 (433)
Q Consensus 225 le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WR 304 (433)
|-+-+++..+.++-.+ +..+ +...+.++-|+...-+|||....- ...+|.+.+|++-|.||
T Consensus 607 IVsSelqlapsmttvd----qleS----------qvdnvilqtgEsasecfclqcpsl-----gniEggvatGhyiisWk 667 (809)
T KOG4386|consen 607 IVSSELQLAPSMTTVD----QLES----------QVDNVILQTGESASECFCLQCPSL-----GNIEGGVATGHYIISWK 667 (809)
T ss_pred HHHHHHhhhhhheeee----cccc----------cccchhhhcccceeeeeeEecccc-----ccccCCCccceEEEEEe
Confidence 6666666555433221 1111 112345667899999999998642 23468899999999999
Q ss_pred cCCC-CCeeeeEEeeeeccCccCCeEEEE-EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecc
Q 013971 305 TNLG-EPGRLQTQQILGTTITSKEIELNV-VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGL 382 (433)
Q Consensus 305 s~~G-e~G~L~Ts~l~~~~~~~~dl~l~v-~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~ 382 (433)
|... |.--.-|+.+.++-.....+.|.| .++|+...|++|..+.+.+.|+|+-..+ +++.++++| +||++|.
T Consensus 668 RtsameNipiittVitLphviVe~iPlhvnadlpsfgrVReslpvkyhLqnktdlvqd-veisvepsD-----aFMFSGl 741 (809)
T KOG4386|consen 668 RTSAMENIPIITTVITLPHVIVEAIPLHVNADLPSFGRVRESLPVKYHLQNKTDLVQD-VEISVEPSD-----AFMFSGL 741 (809)
T ss_pred ecccccCCCceeeecccccceeeeccceeecCCCCcceecccccEEEEeccccceeee-EEeecccch-----hheeccc
Confidence 9633 333345666777777788888888 7899999999999999999999999998 999998886 8999999
Q ss_pred cceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEeC
Q 013971 383 RIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDK 420 (433)
Q Consensus 383 ~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~ 420 (433)
+.+++ .+.||.+.++.++++||.+|.|.+|.|.|.-.
T Consensus 742 kqirl-riLPGteqemlynfypLmAGyqqlPslninll 778 (809)
T KOG4386|consen 742 KQIRL-RILPGTEQEMLYNFYPLMAGYQQLPSLNINLL 778 (809)
T ss_pred ceEEE-EEcCCCceEEEEEEehhhchhhhCCcccccCc
Confidence 99999 89999999999999999999999999887543
No 5
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=98.88 E-value=2.5e-07 Score=92.82 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=83.1
Q ss_pred CeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCC------------------------------------
Q 013971 327 EIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------------------------------------ 370 (433)
Q Consensus 327 dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~------------------------------------ 370 (433)
.+.+.. .-|..|+++++|..++.|.|+|+..++ |.|.+.+..
T Consensus 157 gv~~sF-~gp~~V~~Ge~F~w~v~ivN~S~~~r~-L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~ 234 (306)
T PF12735_consen 157 GVTFSF-SGPSSVKVGEPFSWKVFIVNRSSSPRK-LALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQ 234 (306)
T ss_pred CeEEEE-eCCceEecCCeEEEEEEEEECCCCCee-EEEEecCccccccccccCCCCCcccccccccccccccceehhHHH
Confidence 344443 336889999999999999999999998 999888711
Q ss_pred ------CCC-ceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEeCCCCeEEeecC
Q 013971 371 ------SDE-EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKLEKITYDSLP 430 (433)
Q Consensus 371 ------~~~-~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~~~~~y~~~~ 430 (433)
... ..++++-.. .+++|.|.|+++..+.|.++|+.+|++.|.||+|+|..++..+|+=.
T Consensus 235 ~~~~~~~~~~~~gli~Lsn-DiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~ 300 (306)
T PF12735_consen 235 AMQKYSSVEESTGLICLSN-DIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGD 300 (306)
T ss_pred HhhhhcccccCCceEEecc-cccccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCC
Confidence 000 235655555 78999999999999999999999999999999999999999998743
No 6
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=98.32 E-value=0.00056 Score=80.32 Aligned_cols=301 Identities=19% Similarity=0.229 Sum_probs=176.2
Q ss_pred ccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCC-Cceeecc----------CCC-----CC-----CccccCC
Q 013971 90 LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTD-KQRILLL----------DTS-----KS-----PVESIRA 148 (433)
Q Consensus 90 LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~-s~r~~L~----------~~~-----~~-----~~~~L~p 148 (433)
++++-=.+|=||+..+.|.+.|.|..+|..+.+...=.|. .-...+. +.+ .. .-..|.|
T Consensus 788 l~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~P 867 (1185)
T PF08626_consen 788 LTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPP 867 (1185)
T ss_pred CCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCC
Confidence 4555456799999999999999999999998887641111 0000110 000 00 0017899
Q ss_pred CCeeeEEEEEEcccc--cceEEEEEEEEEc--CCCceeecCee---EEEEeecCeEEE-EEEEEe---------------
Q 013971 149 GGRYDFIVEHDVKEL--GAHTLVCTALYSD--GEGERKYLPQF---FKFIVSNPLSVR-TKVRVV--------------- 205 (433)
Q Consensus 149 g~~ld~iv~~~lke~--G~h~L~c~V~Y~~--~~ge~~~frK~---ykF~v~~Pl~Vr-TK~~~~--------------- 205 (433)
|++..+-++.+.+.. ..+.....+.|.. .+++.-+.|++ +...|.+.++|. -.+..+
T Consensus 868 g~~~~~~~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~ 947 (1185)
T PF08626_consen 868 GESATFTVEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISY 947 (1185)
T ss_pred CCEEEEEEEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhh
Confidence 999999888776653 2455555667763 34555677777 556666666553 233322
Q ss_pred ------------CCeeEEEEEEEecCcccEEEEeEEeeecCCcceee--ecCCCCCCCCCc---ccccc------cC-Cc
Q 013971 206 ------------KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATM--LKADGPHSDYNA---QSREI------FK-PP 261 (433)
Q Consensus 206 ------------~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~--ln~~~~~~~~~~---~~~~~------~~-~~ 261 (433)
.+-++|...|.|....+|.++ ++-...+.... +.. +.... |...+ +. .|
T Consensus 948 ~~~~~~~~~~~~~~~clL~lDlrNsw~~~~~v~---l~~~~~~~~~~~~I~p----g~t~Ri~vPi~Ri~l~~~~~~~~p 1020 (1185)
T PF08626_consen 948 ITSLKSDVNDDSSDYCLLLLDLRNSWPNPLSVN---LHYDEDFSSSEITIEP----GHTSRIIVPIKRIYLEDPDFSFKP 1020 (1185)
T ss_pred hhhhcccccCCCCCeEEEEEEEEecCCCceEEE---EEeccCccccceEECC----CCeEEEEEEecccccCCcccccCc
Confidence 245899999999999988832 11122222211 111 10000 00000 00 11
Q ss_pred eEEeCCCCeeeEEEEEeecCCCCCCCcccc----CceeeEEEEEEEEcCCCCCeeeeEEee-eec-----cCccCCeEEE
Q 013971 262 VLIRSGGGIHNYLYQLKMLSHGSSSPVKVQ----GSNVLGKLQITWRTNLGEPGRLQTQQI-LGT-----TITSKEIELN 331 (433)
Q Consensus 262 ~l~l~~gd~~q~lf~L~p~~~~~~~~~~~~----g~~~lG~L~I~WRs~~Ge~G~L~Ts~l-~~~-----~~~~~dl~l~ 331 (433)
. .+....+||+=. +....+.....+ ....+-+|...|+...+..|.+.--.+ ... ..-.+++.+.
T Consensus 1021 i--p~l~~~rqfv~s---k~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~irLt~~mv~~L~~~~i~i~ 1095 (1185)
T PF08626_consen 1021 I--PSLSRNRQFVVS---KLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIRLTPRMVDILRLDPIQID 1095 (1185)
T ss_pred C--CCcccCceeEEC---CCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccccCHHHHHhhccCccceE
Confidence 1 112234565422 211110000011 025688999999987666888665555 221 2345566555
Q ss_pred EE---ecCc---------eEEeCCcEEEEEEEEeCCCCccccEEEEEEeCC------CCCceeEEEecccceeeeeeCCC
Q 013971 332 VV---EVPS---------VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND------SDEEKVVMINGLRIMALAPVEAF 393 (433)
Q Consensus 332 v~---~~P~---------~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~------~~~~~~~~~~G~~~~~Lg~L~P~ 393 (433)
+. +-+. .+.+++.++++++|+|++++.+. +.+....+. .+...-++|+|.....++.|+|+
T Consensus 1096 ~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~-l~~~~~~~~~~~~~~~~~~~ril~~G~Lq~~l~~l~p~ 1174 (1185)
T PF08626_consen 1096 FSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPIS-LRLQPSLDHQNGNVALDLDRRILWNGSLQQPLPELEPG 1174 (1185)
T ss_pred EEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCcee-eEeeeeccCCCcccccCcCCeEEEEccCcccccccCCC
Confidence 42 1122 36799999999999999999876 544433221 12345799999999999999999
Q ss_pred CeEEEEEEEE
Q 013971 394 GSTDFHLNLI 403 (433)
Q Consensus 394 ~s~~~~L~l~ 403 (433)
++.++.+.++
T Consensus 1175 ~~~~~~~~li 1184 (1185)
T PF08626_consen 1175 ESTEHELSLI 1184 (1185)
T ss_pred ceEEEEEEEE
Confidence 9999999876
No 7
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=97.75 E-value=8.8e-05 Score=55.26 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=45.0
Q ss_pred EEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEE
Q 013971 362 FEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITV 417 (433)
Q Consensus 362 l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l 417 (433)
|.|.++.++ .|+++|.+.++. .+.|++..++.++.+|+.+|++.+|.|.|
T Consensus 8 lli~V~~n~-----~F~v~G~~~~~~-~~~~~~~~~i~~~Fipl~aG~~~LP~I~I 57 (57)
T PF12742_consen 8 LLIEVDKND-----NFIVCGPKKMNF-HMWPGQKFEIPYNFIPLTAGFLKLPKINI 57 (57)
T ss_pred eEEEEcCCC-----ceEEEccceeEE-EEccCceEEEEEEEEEeehheecCccccC
Confidence 557777764 899999999999 89999999999999999999999999864
No 8
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=97.68 E-value=0.00073 Score=60.68 Aligned_cols=80 Identities=14% Similarity=0.262 Sum_probs=64.0
Q ss_pred CceEEeCCcEEEEEEEEeC-----------CCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971 336 PSVVGIDKPFLLKLKLTNQ-----------TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (433)
Q Consensus 336 P~~v~v~~PF~v~~~v~N~-----------s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p 404 (433)
+...++++|..++++|+|. .+.... +...+..+. +.++++|.+...+ .+..++..+|.+.|+|
T Consensus 24 ~~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~-~~yei~a~~----~~WlV~Grrrg~f-~~~~~~~~~~~l~LIP 97 (147)
T PF12584_consen 24 PPPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTE-FMYEIVADS----DNWLVSGRRRGVF-SLSDGSEHEIPLTLIP 97 (147)
T ss_pred CcceEeCCeEEEEEEEEEcccCCccccccccCCCcc-EEEEEecCC----CcEEEeccCcceE-EecCCCeEEEEEEEEe
Confidence 5568999999999999995 122233 555553332 4799999998887 6699999999999999
Q ss_pred cccceEEeCceEEEeCC
Q 013971 405 TKLGVQRITGITVFDKL 421 (433)
Q Consensus 405 l~~Glq~isgI~l~D~~ 421 (433)
|..|.-.+|.|+|....
T Consensus 98 L~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 98 LRAGYLPLPKVEIRPYD 114 (147)
T ss_pred cccceecCCEEEEEecc
Confidence 99999999999997655
No 9
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.87 E-value=0.014 Score=47.60 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=57.0
Q ss_pred CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013971 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (433)
Q Consensus 326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl 405 (433)
.||.+.+...|..+..++++.+++.|+|.-.....++.+.+..++ ... ....++.|.||++..+.+++.+-
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~-----~~~----~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDG-----NSV----STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETT-----EEE----EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECC-----cee----ccEEECCcCCCcEEEEEEEEEeC
Confidence 577776788899999999999999999996666666778776654 222 35567899999999999999999
Q ss_pred ccceEEeC
Q 013971 406 KLGVQRIT 413 (433)
Q Consensus 406 ~~Glq~is 413 (433)
.+|.+.|.
T Consensus 73 ~~G~~~i~ 80 (101)
T PF07705_consen 73 SPGSYTIR 80 (101)
T ss_dssp S-CEEEEE
T ss_pred CCCeEEEE
Confidence 99988854
No 10
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=96.70 E-value=0.0039 Score=52.55 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=55.4
Q ss_pred EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc------ceeeeeeCCCCeEEEEEEEEecc
Q 013971 333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTDFHLNLIATK 406 (433)
Q Consensus 333 ~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~------~~~Lg~L~P~~s~~~~L~l~pl~ 406 (433)
.++++.+.++++|.+.+.++|.++..+..+.+.|... .+.++|.. ......|.|+++.++.+.+.|..
T Consensus 5 i~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~------~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 5 IKLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAF------TVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEE------EEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred EEECCCccCCCCEEEEEEEEeCCcCccccceeEEEEE------EEEECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 3667888899999999999999888855577877553 57777773 33567899999999999999999
Q ss_pred cceE
Q 013971 407 LGVQ 410 (433)
Q Consensus 407 ~Glq 410 (433)
.|-.
T Consensus 79 yG~~ 82 (107)
T PF00927_consen 79 YGPK 82 (107)
T ss_dssp HEEE
T ss_pred Eecc
Confidence 9983
No 11
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=96.11 E-value=1.1 Score=48.40 Aligned_cols=220 Identities=12% Similarity=0.163 Sum_probs=122.8
Q ss_pred cCeEEEEEEEEe----CCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCC-CCCCCcc--cc-cccCCceEEe
Q 013971 194 NPLSVRTKVRVV----KEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGP-HSDYNAQ--SR-EIFKPPVLIR 265 (433)
Q Consensus 194 ~Pl~VrTK~~~~----~~~~~LEaqiqN~s~~pl~le~v~lep~~~~~~~~ln~~~~-~~~~~~~--~~-~~~~~~~l~l 265 (433)
.+|+++-.|... ++.+.+++.|.+..+.||.+.++++.-........+..+.. ....+.+ .. ..-....+.+
T Consensus 10 ~~l~~~~~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l 89 (554)
T PF07919_consen 10 PFLEASVAFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTL 89 (554)
T ss_pred CcEEEEEEEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEE
Confidence 345666666543 67889999999999999999999998766433222212110 0000000 00 0112335667
Q ss_pred CCCCeeeEEEEEeecCCCCCCCcccc-CceeeE----EEEEEEEcCCCCCe---eeeEEe-------e--------eecc
Q 013971 266 SGGGIHNYLYQLKMLSHGSSSPVKVQ-GSNVLG----KLQITWRTNLGEPG---RLQTQQ-------I--------LGTT 322 (433)
Q Consensus 266 ~~gd~~q~lf~L~p~~~~~~~~~~~~-g~~~lG----~L~I~WRs~~Ge~G---~L~Ts~-------l--------~~~~ 322 (433)
.||....|-|.+.++........... -...+| .+.+.|+-..+..+ ...++. + .+-.
T Consensus 90 ~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~ 169 (554)
T PF07919_consen 90 SPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRIL 169 (554)
T ss_pred eecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEE
Confidence 78889888888887652110111111 123344 35556766522211 111111 0 0011
Q ss_pred CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCcccc-EEEEEE--------eCCCCCceeEEEec-------cccee
Q 013971 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP-FEIWLS--------QNDSDEEKVVMING-------LRIMA 386 (433)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~-l~v~l~--------~~~~~~~~~~~~~G-------~~~~~ 386 (433)
+....+++.+...-....++|.+.+.+.|.|..+..... +.+.+- ...+......-|.+ .....
T Consensus 170 p~pp~v~I~~~~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (554)
T PF07919_consen 170 PRPPKVSIKLPNHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIP 249 (554)
T ss_pred CCCCCeEEEeCCCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCcc
Confidence 334555556534456678999999999999997776551 333333 01100111122333 33567
Q ss_pred eeeeCCCCeEEEEEEEEecccceEEeC
Q 013971 387 LAPVEAFGSTDFHLNLIATKLGVQRIT 413 (433)
Q Consensus 387 Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (433)
+|.|.++++.+..+.+....+|-..|.
T Consensus 250 lg~l~~~~s~~~~l~i~~~~~~~~~L~ 276 (554)
T PF07919_consen 250 LGELAPGSSITVTLYIRTSRPGEYELS 276 (554)
T ss_pred cccCCCCCcEEEEEEEEeCCceeEEEE
Confidence 899999999999999997777776665
No 12
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.14 E-value=0.072 Score=42.22 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=45.4
Q ss_pred ecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEccc---ccceEEEEEEEEE
Q 013971 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKE---LGAHTLVCTALYS 175 (433)
Q Consensus 99 lGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke---~G~h~L~c~V~Y~ 175 (433)
-||++...+.+.|.....+.++.+.+++ |..-. .. .....+..|.||++....+...+-+ .|.|.|.+.+.|+
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~~-~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-VS-ASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-cc-CCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 3999999999999988889998888877 44322 10 0112244899999888777777743 5999999999995
No 13
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.48 E-value=0.43 Score=39.42 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=53.0
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeC-CCceeeccCCCCCCccccCCCCeeeEEEEEE-cccccceEEEE
Q 013971 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQT-DKQRILLLDTSKSPVESIRAGGRYDFIVEHD-VKELGAHTLVC 170 (433)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT-~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~-lke~G~h~L~c 170 (433)
.||++.+|++....|.+.|.+..+ .++++.... .+..+.... .-..|+||.+.+.-|.+. -++.|.+.-..
T Consensus 12 dFG~v~~g~~~~~~v~l~N~s~~p---~~f~v~~~~~~~~~~~v~~----~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 12 DFGNVFVGQTYSRTVTLTNTSSIP---ARFRVRQPESLSSFFSVEP----PSGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred EeeEEccCCEEEEEEEEEECCCCC---EEEEEEeCCcCCCCEEEEC----CCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 699999999999999999998664 455555444 222333321 123699999999999999 88899875544
Q ss_pred EE
Q 013971 171 TA 172 (433)
Q Consensus 171 ~V 172 (433)
.|
T Consensus 85 ~i 86 (102)
T PF14874_consen 85 VI 86 (102)
T ss_pred EE
Confidence 44
No 14
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=93.93 E-value=0.12 Score=42.06 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=54.2
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEE
Q 013971 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (433)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (433)
+-+.++.|+.+...+.|.|.......++.+++.+ ....+ . ...+..|.||++....+.+...+.|.|.+.+.|
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~--~~~~~---~--~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADAENVTVRLYL--DGNSV---S--TVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEE--TTEEE---E--EEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEE--CCcee---c--cEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 3456789999999999999988778887776533 22222 1 123568999999999999999999999999998
Q ss_pred EEEc
Q 013971 173 LYSD 176 (433)
Q Consensus 173 ~Y~~ 176 (433)
.+..
T Consensus 84 D~~n 87 (101)
T PF07705_consen 84 DPDN 87 (101)
T ss_dssp STTT
T ss_pred eeCC
Confidence 7643
No 15
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.27 E-value=1.3 Score=41.24 Aligned_cols=81 Identities=9% Similarity=0.035 Sum_probs=63.8
Q ss_pred cCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCcee-EEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013971 335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKV-VMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (433)
Q Consensus 335 ~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~-~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (433)
++..+..++-++|++.|.|.-+.... .|.+..+.= .... -++.|.....+..|+||+++++.+.+.|...|...+.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~G~~~A~--dV~l~D~~f-p~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~ 106 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNVGSSAAY--DVKLTDDSF-PPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFT 106 (181)
T ss_pred ccccccCCcEEEEEEEEEECCCCeEE--EEEEECCCC-CccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEcc
Confidence 46667789999999999999666653 455654210 1123 3688989999999999999999999999999999999
Q ss_pred ceEEE
Q 013971 414 GITVF 418 (433)
Q Consensus 414 gI~l~ 418 (433)
.-.+.
T Consensus 107 ~a~Vt 111 (181)
T PF05753_consen 107 PAVVT 111 (181)
T ss_pred CEEEE
Confidence 96663
No 16
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=90.28 E-value=0.9 Score=35.88 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=34.3
Q ss_pred EeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013971 340 GIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (433)
Q Consensus 340 ~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~p 404 (433)
.-++++.+++.|+|..+..+..+.+.++.-+ ++- ...+...++.|.||++.++.+.+-|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~-----GW~-~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPE-----GWT-VSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--T-----TSE----EEEEE--B-TTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCC-----Ccc-ccCCccccccCCCCCEEEEEEEEEC
Confidence 3478899999999997665544777776532 333 2333446668999999999998866
No 17
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.95 E-value=3.7 Score=38.26 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=62.5
Q ss_pred eecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCC-CCCccccCCCCeeeEEEEEEcccccceEE-EEEEEEE
Q 013971 98 YLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTS-KSPVESIRAGGRYDFIVEHDVKELGAHTL-VCTALYS 175 (433)
Q Consensus 98 ylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~-~~~~~~L~pg~~ld~iv~~~lke~G~h~L-~c~V~Y~ 175 (433)
-.|+.....+.+-|.-+.++.||.|.-+= -++....|.... ......|.||+++..++.-+-+..|.|.+ ...|+|+
T Consensus 35 v~g~~v~V~~~iyN~G~~~A~dV~l~D~~-fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 35 VEGEDVTVTYTIYNVGSSAAYDVKLTDDS-FPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYR 113 (181)
T ss_pred cCCcEEEEEEEEEECCCCeEEEEEEECCC-CCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEE
Confidence 45999999999999999999999887621 133445553221 12356899999999999999999999988 6779998
Q ss_pred cCCC
Q 013971 176 DGEG 179 (433)
Q Consensus 176 ~~~g 179 (433)
...|
T Consensus 114 ~~~~ 117 (181)
T PF05753_consen 114 DSEG 117 (181)
T ss_pred CCCC
Confidence 8765
No 18
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=87.41 E-value=4 Score=36.19 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred cceeecc---eeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEE--cccccceEEE
Q 013971 95 GAIYLGE---TFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHD--VKELGAHTLV 169 (433)
Q Consensus 95 G~iylGE---tF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~--lke~G~h~L~ 169 (433)
+++-+|+ .....+.+.|....-+.++.+++++...++.-.+...... ...++|+..+++-|..+ -=..|.|+|.
T Consensus 33 ~~v~~~~~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~-~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~ 111 (140)
T PF11797_consen 33 GKVKPGQINGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKE-NMQMAPNSNFNFPIPLGGKKLKPGKYTLK 111 (140)
T ss_pred eeeeeeEECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeecc-CCEECCCCeEEeEecCCCcCccCCEEEEE
Confidence 4444444 5667788899999999999999999999876555432222 33799999999988884 4566999999
Q ss_pred EEEEEEcCCCceeecCeeEEEE
Q 013971 170 CTALYSDGEGERKYLPQFFKFI 191 (433)
Q Consensus 170 c~V~Y~~~~ge~~~frK~ykF~ 191 (433)
.++.+. ++...|.|-|+..
T Consensus 112 ~~~~~~---~~~W~f~k~F~It 130 (140)
T PF11797_consen 112 ITAKSG---KKTWTFTKDFTIT 130 (140)
T ss_pred EEEEcC---CcEEEEEEEEEEC
Confidence 998764 3356676666543
No 19
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=86.00 E-value=4.1 Score=33.16 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred CccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEE
Q 013971 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366 (433)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l 366 (433)
...+++.+. .++|..++.++-+.+.+.|.|+.++.++ +.|.|
T Consensus 51 ~v~~p~~i~-~~lP~~l~~GD~~~i~v~v~N~~~~~~~-v~V~l 92 (92)
T PF00207_consen 51 TVFKPFFIQ-LNLPRSLRRGDQIQIPVTVFNYTDKDQE-VTVTL 92 (92)
T ss_dssp EEB-SEEEE-EE--SEEETTSEEEEEEEEEE-SSS-EE-EEEEE
T ss_pred EEEeeEEEE-cCCCcEEecCCEEEEEEEEEeCCCCCEE-EEEEC
Confidence 345566555 5899999999999999999999999887 66654
No 20
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=85.99 E-value=11 Score=30.97 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred cceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEEEEcC
Q 013971 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDG 177 (433)
Q Consensus 100 GEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V~Y~~~ 177 (433)
+......+.+.|.+..++++..+.+.. .....+.+...+ ...|.||+.++..+.......+.-.+.+.|+|...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~av-pk~~~l~l~~~s---~~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAV-PKSLKLQLQPPS---SPTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEc-ccceEEEEcCCC---CCccCCCCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 445678888999999999999988874 334555553321 23688999999999999988888999999999975
No 21
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=85.52 E-value=18 Score=30.41 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred ecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccce------EEEEEE
Q 013971 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH------TLVCTA 172 (433)
Q Consensus 99 lGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h------~L~c~V 172 (433)
-+...+..+.+.|.+..+++++.+.+..- .+..+.|... +...|.|++.++..+.... ..-.. .+.+.|
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avp-k~~~l~l~~~---s~~~i~p~~~i~Q~~~v~~-~~~~~~~~~~l~~~~~v 96 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVP-KSFKLQLQPP---SSSTIPPGQQITQVIKVEN-SPFSEPTPKPLKPRLRV 96 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEB-TTSEEEEEES---S-SSB-TTTEEEEEEEEEE-SS-BSTTSSTTEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEec-cccEEEEeCC---CCCeeCCCCeEEEEEEEEE-eecccCCCCCcCeEEEE
Confidence 46677888999999999999999998776 5566666432 2336889999999999999 33233 899999
Q ss_pred EEEcC
Q 013971 173 LYSDG 177 (433)
Q Consensus 173 ~Y~~~ 177 (433)
+|...
T Consensus 97 sy~~~ 101 (115)
T PF02883_consen 97 SYNVG 101 (115)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99985
No 22
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=85.49 E-value=7 Score=32.04 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=48.1
Q ss_pred eEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEE-ecccceEE
Q 013971 338 VVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLI-ATKLGVQR 411 (433)
Q Consensus 338 ~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~-pl~~Glq~ 411 (433)
.+.+++.....+.|+|.+..... +.+...... ...|.+.-. =|.|.||.+.++.+.+. +-..|...
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~-f~v~~~~~~---~~~~~v~~~----~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPAR-FRVRQPESL---SSFFSVEPP----SGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEE-EEEEeCCcC---CCCEEEECC----CCEECCCCEEEEEEEEEeCCCCceEE
Confidence 35789999999999999999876 666553311 234544432 35799999999999999 55567654
No 23
>PF13584 BatD: Oxygen tolerance
Probab=82.30 E-value=72 Score=33.83 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCc-cccEEEEEEeCCCCCceeEEE-ecccceeeeeeC---CCCeEEEEE
Q 013971 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKE-QGPFEIWLSQNDSDEEKVVMI-NGLRIMALAPVE---AFGSTDFHL 400 (433)
Q Consensus 326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~-~~~l~v~l~~~~~~~~~~~~~-~G~~~~~Lg~L~---P~~s~~~~L 400 (433)
+++.|...--|..+++++|++++++|.-.-+-. +..-.+.+. ++|-+ ........ ... ..+++++.+
T Consensus 271 g~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~~~~lP~l~~~-------~~~~vy~~~~~~~~-~~~~~g~~g~~~~~~ 342 (484)
T PF13584_consen 271 GNFSLSQSWDPTEVKVGEPVTRTITISGEGNLPSIQLPPLNLP-------KGFRVYPPKPQEQD-KPSGGGLTGSRTFKY 342 (484)
T ss_pred eEEEEEEEcCcccccCCCeEEEEEEEEEEcchhcccCCCCCCC-------cccEEcCCCccccc-cccCCcceEEEEEEE
Confidence 556666644477899999999999998663322 221112111 12322 22211111 111 245899999
Q ss_pred EEEecccceEEeCceEE--EeCCCCeEE
Q 013971 401 NLIATKLGVQRITGITV--FDKLEKITY 426 (433)
Q Consensus 401 ~l~pl~~Glq~isgI~l--~D~~~~~~y 426 (433)
.++|...|-..||.|++ +|+.+++-.
T Consensus 343 ~~ip~~~G~~~lP~i~~~~fdp~~~~y~ 370 (484)
T PF13584_consen 343 TLIPKKPGDFTLPAIRFSWFDPQTGKYE 370 (484)
T ss_pred EEEeCCCCeEEcCCeEEEEEcCCCCeEE
Confidence 99999999999999776 798887643
No 24
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=81.39 E-value=2.5 Score=35.32 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=48.6
Q ss_pred cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCC--cee--eccCCCCCCccccCCCCeeeEEEEEEcccccceEEEE
Q 013971 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK--QRI--LLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVC 170 (433)
Q Consensus 95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s--~r~--~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c 170 (433)
|.+.+|+.|.+.+.+.|.++..+++|.+....++-. ... .+.. .....+|.||+.....+...-++-|...+.+
T Consensus 9 ~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~--~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l~ 86 (107)
T PF00927_consen 9 GDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKK--EKFEVTLKPGETKSVEVTITPSQYGPKQLLV 86 (107)
T ss_dssp SEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEE--EEEEEEE-TTEEEEEEEEE-HHSHEEECCEE
T ss_pred CCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeE--EEcceeeCCCCEEEEEEEEEceeEecchhcc
Confidence 567899999999999999999999988777555432 111 1111 1124478899988877777777777754444
Q ss_pred E
Q 013971 171 T 171 (433)
Q Consensus 171 ~ 171 (433)
.
T Consensus 87 ~ 87 (107)
T PF00927_consen 87 D 87 (107)
T ss_dssp E
T ss_pred h
Confidence 4
No 25
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=75.08 E-value=13 Score=36.26 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=51.9
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCC--ceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCc
Q 013971 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDE--EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (433)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~--~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (433)
+.|++.|...+.+.|.++..+..+.|.++---... .-.+.-.+.....+..|.|+++.++.+.--=-..|.|.+.-
T Consensus 10 iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c 87 (249)
T PF06159_consen 10 IYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKELGNHTLVC 87 (249)
T ss_pred EeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeecCceEEEE
Confidence 78999999999999999887765555554321101 01122222222346789999999998887777889998855
No 26
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=75.06 E-value=8.4 Score=38.79 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=27.3
Q ss_pred eecceeeEEEEEEcCCCCceeeEEEEEEEeCC
Q 013971 98 YLGETFCSYISINNSSTLEVRDVVIKAEIQTD 129 (433)
Q Consensus 98 ylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~ 129 (433)
|=||..+..++|.|+|+..|+.+.+.|.=.+.
T Consensus 207 yHGE~isvnV~V~NNsnKtVKkIK~~V~Q~ad 238 (402)
T KOG3865|consen 207 YHGEPISVNVHVTNNSNKTVKKIKISVRQVAD 238 (402)
T ss_pred ecCCceeEEEEEecCCcceeeeeEEEeEeece
Confidence 78999999999999999999988877654433
No 27
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=75.02 E-value=11 Score=30.95 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.3
Q ss_pred CcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecc
Q 013971 343 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 406 (433)
Q Consensus 343 ~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~ 406 (433)
+.-...+.|+|.++..+. +.| +.+. ...+.+. + ..|.|.|+++..+.+++.|..
T Consensus 18 ~~~~~~l~l~N~s~~~i~-fKi--ktt~---~~~y~v~-P---~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIA-FKI--KTTN---PNRYRVK-P---SYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEE-EEE--EES----TTTEEEE-S---SEEEE-TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEE-EEE--EcCC---CceEEec-C---CCEEECCCCEEEEEEEEEecc
Confidence 446889999999999765 444 4432 1245544 3 278899999999999999843
No 28
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=69.97 E-value=26 Score=30.39 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=34.0
Q ss_pred CCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccccee-----------------eeeeCCCCeEEEEEEE
Q 013971 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMA-----------------LAPVEAFGSTDFHLNL 402 (433)
Q Consensus 342 ~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~-----------------Lg~L~P~~s~~~~L~l 402 (433)
++--+++++|+|+|++.+. +.+.+.+--+.....+-|....... + .|.|+++..+.+++
T Consensus 26 ~q~~~l~v~i~N~s~~~~t-v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~V-tl~~~~sk~V~~~i 101 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEIT-VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEV-TLPPNESKTVTFTI 101 (121)
T ss_pred CCEEEEEEEEEeCCCCCEE-EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEE-EECCCCEEEEEEEE
Confidence 3445566677777777666 6665555333223334443322110 3 68999999998885
No 29
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=66.48 E-value=35 Score=34.53 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=62.0
Q ss_pred ccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccce-eee--------eeCCCC
Q 013971 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIM-ALA--------PVEAFG 394 (433)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~-~Lg--------~L~P~~ 394 (433)
.-+.|.|.+.==-....=++|..+.+.|+|||++.+..+.+.+++- ++-++++.-+-. .+- .+.||+
T Consensus 191 S~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~----adi~Lfs~aqy~~~VA~~E~~eGc~v~Pgs 266 (402)
T KOG3865|consen 191 SDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQV----ADICLFSTAQYKKPVAMEETDEGCPVAPGS 266 (402)
T ss_pred CCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEee----ceEEEEecccccceeeeeecccCCccCCCC
Confidence 3444555542223446789999999999999999998888888774 234555332211 111 478999
Q ss_pred eEEEEEEEEecccceEEeCceEE
Q 013971 395 STDFHLNLIATKLGVQRITGITV 417 (433)
Q Consensus 395 s~~~~L~l~pl~~Glq~isgI~l 417 (433)
+.+=.++|+|+.+--..=.||.|
T Consensus 267 tl~Kvf~l~PllanN~dkrGlAL 289 (402)
T KOG3865|consen 267 TLSKVFTLTPLLANNKDKRGLAL 289 (402)
T ss_pred eeeeeEEechhhhcCcccccccc
Confidence 99999999999887666666654
No 30
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=63.15 E-value=17 Score=32.66 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=46.8
Q ss_pred CCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee
Q 013971 309 EPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA 388 (433)
Q Consensus 309 e~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg 388 (433)
..|.--...+.|.+..+..- -..|.+.++|+++..+. .|.+..+. ...+.-+.+ .-.++
T Consensus 66 G~GL~v~Y~F~RqP~~~s~~---------------mvsIql~ftN~s~~~i~--~I~i~~k~--l~~g~~i~~--F~~I~ 124 (145)
T PF14796_consen 66 GKGLSVEYRFSRQPSLYSPS---------------MVSIQLTFTNNSDEPIK--NIHIGEKK--LPAGMRIHE--FPEIE 124 (145)
T ss_pred CCceeEEEEEccCCcCCCCC---------------cEEEEEEEEecCCCeec--ceEECCCC--CCCCcEeec--cCccc
Confidence 45666666666654333322 22367889999999887 56665543 334666666 34678
Q ss_pred eeCCCCeEEEEE
Q 013971 389 PVEAFGSTDFHL 400 (433)
Q Consensus 389 ~L~P~~s~~~~L 400 (433)
.|+||++++..+
T Consensus 125 ~L~pg~s~t~~l 136 (145)
T PF14796_consen 125 SLEPGASVTVSL 136 (145)
T ss_pred ccCCCCeEEEEE
Confidence 899999998877
No 31
>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.10 E-value=63 Score=29.85 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeE-EEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEE
Q 013971 342 DKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVV-MINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITV 417 (433)
Q Consensus 342 ~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~-~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l 417 (433)
.+-+.+++-|.|.-+... +.|.++.+.= ....| ++.|.....-+.|++|+.+..++.+.|.++|.-.-..-+|
T Consensus 41 ~rd~~leY~IyNvGsspA--ldVtLsD~Sf-pt~~FeIvkG~~~~swerIpags~vsHsivl~prv~g~f~~t~atV 114 (188)
T KOG3317|consen 41 ARDVSLEYDIYNVGSSPA--LDVTLSDNSF-PTKTFEIVKGNLSVSWERIPAGSNVSHSIVLRPRVKGVFNGTPATV 114 (188)
T ss_pred ceeeEEEEeeEEcCCCcc--eeEEecCCCC-CccceeeeccccccceeecCCCCceEEEEEEeecccceeccCceEE
Confidence 356788999999965554 4566655321 11233 6789999999999999999999999999999977666444
No 32
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=62.06 E-value=55 Score=27.75 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=54.6
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeecc-CC--CCCCccccCCCCeeeEEEEEEc-ccccceEEEEEE
Q 013971 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL-DT--SKSPVESIRAGGRYDFIVEHDV-KELGAHTLVCTA 172 (433)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~-~~--~~~~~~~L~pg~~ld~iv~~~l-ke~G~h~L~c~V 172 (433)
+..||++...|.++.. .++.++.+-+.+.+........ ++ ...+..... ++.....+..+. =..|.|.+.+.+
T Consensus 31 ~~~ge~~~i~i~~~~~--~~i~~~~~~~~i~~~~g~~v~~~~t~~~~~~~~~~~-~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 31 FESGEPIRIRIDYEVN--EDIDDPVFGFAIRDSDGQRVFGTNTYDSGFPIPLSE-GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp EETTSEEEEEEEEEES--S-EEEEEEEEEEEETT--EEEEEEHHHHT--EEE-T-T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred EeCCCEEEEEEEEEEC--CCCCccEEEEEEEcCCCCEEEEECccccCccccccC-CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 7889999999999984 4788899999998887533221 11 011222222 665555555554 455999999999
Q ss_pred EEEcCCCceee--cCeeEEEEeec
Q 013971 173 LYSDGEGERKY--LPQFFKFIVSN 194 (433)
Q Consensus 173 ~Y~~~~ge~~~--frK~ykF~v~~ 194 (433)
.+ ...+.... ..+.+.|.|..
T Consensus 108 ~~-~~~~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 108 GD-DSSGGEVLDWIEDALSFEVED 130 (142)
T ss_dssp EE-TTTEEEEEEEEEEEEEEEEE-
T ss_pred Ee-cCCCCEEEEEECCEEEEEEEC
Confidence 44 33333333 33557888776
No 33
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=59.78 E-value=1.1e+02 Score=30.75 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=70.4
Q ss_pred cccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCcee----eccCCCCCCccccCCCCeeeEEEEEEccc
Q 013971 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI----LLLDTSKSPVESIRAGGRYDFIVEHDVKE 162 (433)
Q Consensus 87 ~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~----~L~~~~~~~~~~L~pg~~ld~iv~~~lke 162 (433)
....|...-.+.-|+.-.+.|.+.|....++.-..|.+.+..+..-. +++-. .-...+.||+...+-..|-..+
T Consensus 85 ~~~F~~~~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~--~y~~~V~pg~~aT~~YsF~~~~ 162 (285)
T PF03896_consen 85 TILFPKPTKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAV--RYNREVPPGEEATFPYSFTPSE 162 (285)
T ss_pred EEEeccccccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeeccc--ccCcccCCCCeEEEEEEEecch
Confidence 35555556778999999999999999998999999999999886422 22211 1123688999998888887743
Q ss_pred ---ccceEEEEEEEEEcCCCc
Q 013971 163 ---LGAHTLVCTALYSDGEGE 180 (433)
Q Consensus 163 ---~G~h~L~c~V~Y~~~~ge 180 (433)
.+.+.|+..+.|.+.+|.
T Consensus 163 ~l~pr~f~L~i~l~y~d~~g~ 183 (285)
T PF03896_consen 163 ELAPRPFGLVINLIYEDSDGN 183 (285)
T ss_pred hcCCcceEEEEEEEEEeCCCC
Confidence 466899999999988775
No 34
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=59.31 E-value=23 Score=24.79 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=28.4
Q ss_pred EEcccccceEEEEEEEEEcCCCceeecCeeEEEEe
Q 013971 158 HDVKELGAHTLVCTALYSDGEGERKYLPQFFKFIV 192 (433)
Q Consensus 158 ~~lke~G~h~L~c~V~Y~~~~ge~~~frK~ykF~v 192 (433)
.-..++|.|.|...++-...+|+..+-..-|.|.|
T Consensus 7 W~FT~PG~Y~l~~~a~~~~~~G~~~s~~~t~tf~V 41 (41)
T TIGR03769 7 WVFTKPGTYTLTVQATATLTDGKVSSDPQTLTFAV 41 (41)
T ss_pred eeeCCCeEEEEEEEEEEEeCCCcEecCCEEEEEEC
Confidence 34678999999999998888898777777788875
No 35
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=59.16 E-value=89 Score=26.11 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=41.7
Q ss_pred eCCcEEEEEEEEeCCCCccccEEEEEEe---CCC--CCceeE-E-------EecccceeeeeeCCCCeEEEEEEEEecc-
Q 013971 341 IDKPFLLKLKLTNQTDKEQGPFEIWLSQ---NDS--DEEKVV-M-------INGLRIMALAPVEAFGSTDFHLNLIATK- 406 (433)
Q Consensus 341 v~~PF~v~~~v~N~s~r~~~~l~v~l~~---~~~--~~~~~~-~-------~~G~~~~~Lg~L~P~~s~~~~L~l~pl~- 406 (433)
++..+.++++|+|++++... ..+.... +.. +....+ . ........+ .|.||++.+|.+++-+=.
T Consensus 6 ~~~~~~~~itl~N~~~~~~t-y~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-TV~ag~s~~v~vti~~p~~ 83 (112)
T PF06280_consen 6 TGNKFSFTITLHNYGDKPVT-YTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTV-TVPAGQSKTVTVTITPPSG 83 (112)
T ss_dssp E-SEEEEEEEEEE-SSS-EE-EEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEE-EE-TTEEEEEEEEEE--GG
T ss_pred cCCceEEEEEEEECCCCCEE-EEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeE-EECCCCEEEEEEEEEehhc
Confidence 46679999999999988766 5555441 000 000000 0 222333344 689999999999988744
Q ss_pred ---cceEEeCc-eEEEeCCC
Q 013971 407 ---LGVQRITG-ITVFDKLE 422 (433)
Q Consensus 407 ---~Glq~isg-I~l~D~~~ 422 (433)
.-.+.+.| |.+.....
T Consensus 84 ~~~~~~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 84 LDASNGPFYEGFITFKSSDG 103 (112)
T ss_dssp GHHTT-EEEEEEEEEESSTT
T ss_pred CCcccCCEEEEEEEEEcCCC
Confidence 33566777 55554443
No 36
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=59.12 E-value=39 Score=28.60 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=38.2
Q ss_pred CccCCeEEEEEecCceEEeCCcE-----EEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEE
Q 013971 323 ITSKEIELNVVEVPSVVGIDKPF-----LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTD 397 (433)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF-----~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~ 397 (433)
...+++++.|..-+....++..= ..+++|.|.++..+. +.|.++... ++-|.+. ...+ .|.|+++.+
T Consensus 6 ~~R~~~~~~V~rdr~~ly~~~~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~~-----~~~l~~~-~~~i-~v~~g~~~~ 77 (118)
T PF11614_consen 6 STRKPVELNVLRDRGPLYRELSDGSIRNQYTLKLTNKTNQPRT-YTISVEGLP-----GAELQGP-ENTI-TVPPGETRE 77 (118)
T ss_dssp ----SEEEEEEE-SS---------SEEEEEEEEEEE-SSS-EE-EEEEEES-S-----S-EE-ES---EE-EE-TT-EEE
T ss_pred EccCcEEEEEEecCCCcEEEcCCCeEEEEEEEEEEECCCCCEE-EEEEEecCC-----CeEEECC-Ccce-EECCCCEEE
Confidence 34566667776655544332221 267889999999987 888887632 6777442 2333 579999999
Q ss_pred EEEEEEecc
Q 013971 398 FHLNLIATK 406 (433)
Q Consensus 398 ~~L~l~pl~ 406 (433)
+.+.+..-.
T Consensus 78 ~~v~v~~p~ 86 (118)
T PF11614_consen 78 VPVFVTAPP 86 (118)
T ss_dssp EEEEEEE-G
T ss_pred EEEEEEECH
Confidence 888765443
No 37
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=58.84 E-value=2.5e+02 Score=29.91 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred CcccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCC----ccccCCCCeeeEEEEEEcc
Q 013971 86 GLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSP----VESIRAGGRYDFIVEHDVK 161 (433)
Q Consensus 86 ~~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~----~~~L~pg~~ld~iv~~~lk 161 (433)
+.....++-..++-||++..++-+.|..+..++++.+..+- ....+..-.... +..|.||++....+.....
T Consensus 152 ~~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~----~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~ 227 (500)
T COG1361 152 ESFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLES----PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAG 227 (500)
T ss_pred ceeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeC----CcceeccccccccceeeeeeCCCceEEEEEEEEee
Q ss_pred ---cccceEEEEEEEEEcCCCceeecCeeEEEEeecCeEEEEEEEEe------CCeeEEEEEEEecCcccEEEEeEEeee
Q 013971 162 ---ELGAHTLVCTALYSDGEGERKYLPQFFKFIVSNPLSVRTKVRVV------KEITFLEACIENHTKSNLYMDQVEFEP 232 (433)
Q Consensus 162 ---e~G~h~L~c~V~Y~~~~ge~~~frK~ykF~v~~Pl~VrTK~~~~------~~~~~LEaqiqN~s~~pl~le~v~lep 232 (433)
+.|.|.+-..++|.+.++.++.-...=-+.+.....+.-..... .....++..+.|....+.-...+.+..
T Consensus 228 ~~a~~g~y~i~i~i~~~~~~~~~~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~ 307 (500)
T COG1361 228 SNAEPGTYTINLEITYKDEEGSVKSPTITIGIVVVGEPKLDISNVKFDPGVIPLGGVSIEITITIENSGSAPNQTVRLVT 307 (500)
T ss_pred cCCCCccEEEEEEEEEecCCccccccceEEEEecCCceeEEEEEEEecCCeeccceeEEEEEEEEEecccccceEEEEEe
Q ss_pred cCCcc
Q 013971 233 SQNWS 237 (433)
Q Consensus 233 ~~~~~ 237 (433)
...+.
T Consensus 308 ~~~~~ 312 (500)
T COG1361 308 GSPFT 312 (500)
T ss_pred cCCcc
No 38
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=54.71 E-value=85 Score=27.72 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=46.8
Q ss_pred ecceeeEEEEEEcCCCCceeeEEEEEEEeCCCcee-----e-ccCCC-----CCCcc-ccCCCCeeeEEEEEEcc-cccc
Q 013971 99 LGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI-----L-LLDTS-----KSPVE-SIRAGGRYDFIVEHDVK-ELGA 165 (433)
Q Consensus 99 lGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~-----~-L~~~~-----~~~~~-~L~pg~~ld~iv~~~lk-e~G~ 165 (433)
.+|.|..-..|.|.+..+++++.+.+++....+.. . ..... ..++. .|.||++.++.+.++=- .-|+
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~p~~~~ 139 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYPPYFGN 139 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCCccCCC
Confidence 48999999999999999999999999997744211 0 00100 01222 28899988876665522 2244
Q ss_pred eEEEEE
Q 013971 166 HTLVCT 171 (433)
Q Consensus 166 h~L~c~ 171 (433)
+.+..+
T Consensus 140 ~~~~~~ 145 (149)
T PF09624_consen 140 YNIRVK 145 (149)
T ss_pred ceEEEE
Confidence 444443
No 39
>PF13584 BatD: Oxygen tolerance
Probab=54.36 E-value=2e+02 Score=30.40 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=72.8
Q ss_pred eeeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeecc------------CccCCeEEEEEecCc
Q 013971 270 IHNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTT------------ITSKEIELNVVEVPS 337 (433)
Q Consensus 270 ~~q~lf~L~p~~~~~~~~~~~~g~~~lG~L~I~WRs~~Ge~G~L~Ts~l~~~~------------~~~~dl~l~v~~~P~ 337 (433)
...|.|.|.|+. .|.-.++-+.|.+.+ ....|..+.... ...+++.+.+.=-+.
T Consensus 72 ~~~~~~~l~p~~---------~G~~~IP~~~v~v~G-----k~~~S~pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v~~~ 137 (484)
T PF13584_consen 72 STTYTYTLQPKK---------TGTFTIPPFTVEVDG-----KTYKSQPITIEVSKASQSPSQPPSNADDDVFLEAEVSKK 137 (484)
T ss_pred EEEEEEEEEecc---------cceEEEceEEEEECC-----EEEeecCEEEEEEecccCCccccccccccEEEEEEeCCC
Confidence 456677887753 366778888887643 123444443321 135677777644467
Q ss_pred eEEeCCcEEEEEEEEeCCCCc-cccEEEEEEeCCCCCceeEEEecccce-eee--eeCCCC--eEE-EEEEEEecccceE
Q 013971 338 VVGIDKPFLLKLKLTNQTDKE-QGPFEIWLSQNDSDEEKVVMINGLRIM-ALA--PVEAFG--STD-FHLNLIATKLGVQ 410 (433)
Q Consensus 338 ~v~v~~PF~v~~~v~N~s~r~-~~~l~v~l~~~~~~~~~~~~~~G~~~~-~Lg--~L~P~~--s~~-~~L~l~pl~~Glq 410 (433)
.+++++|+.+++++.=..+.. .+ . ..+..-+ ..++.+.-.... ... .+.-.. ... ..+-|+|..+|-.
T Consensus 138 ~~Yvge~v~lt~~ly~~~~~~~~~-~-~~~~~p~---~~~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~~~l~P~ksG~l 212 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNNFRQLG-I-EELPPPD---FEGFWVEQLGDDRQYEEERINGRRYRVIELRRYALFPQKSGTL 212 (484)
T ss_pred ceecCCcEEEEEEEEEecCchhcc-c-cccCCCC---CCCcEEEECCCCCceeEEEECCEEEEEEEEEEEEEEeCCceeE
Confidence 799999999999988654332 11 0 0011111 123333322111 111 122211 233 3478999999999
Q ss_pred EeCceEEE
Q 013971 411 RITGITVF 418 (433)
Q Consensus 411 ~isgI~l~ 418 (433)
.|+.+++.
T Consensus 213 ~I~~~~~~ 220 (484)
T PF13584_consen 213 TIPPATFE 220 (484)
T ss_pred EecCEEEE
Confidence 99986663
No 40
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=53.79 E-value=22 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=28.0
Q ss_pred ccceeecceeeEEEEEEcCCCCceeeEEEEEEE
Q 013971 94 FGAIYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (433)
Q Consensus 94 fG~iylGEtF~~~i~v~N~s~~~v~~V~ikvel 126 (433)
-..++.||++.-.|.+.|..+....+|.|+=.|
T Consensus 34 ~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~l 66 (76)
T PF01345_consen 34 PSTANPGDTVTYTITVTNTGPAPATNVVVTDTL 66 (76)
T ss_pred CCcccCCCEEEEEEEEEECCCCeeEeEEEEEcC
Confidence 345799999999999999999999999876544
No 41
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=48.42 E-value=32 Score=39.94 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=39.5
Q ss_pred ceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCceEEEeCC
Q 013971 374 EKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGITVFDKL 421 (433)
Q Consensus 374 ~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI~l~D~~ 421 (433)
...++++|.+...+..=...++..+++.++||.+|...+|.++|....
T Consensus 1079 s~~Wli~Gr~~g~Is~~~~q~t~~i~v~~vPL~aGyl~lP~v~l~n~~ 1126 (1156)
T KOG1931|consen 1079 SNNWLIAGRKRGVISMKRKQTTHQISVHVVPLKAGYLPLPRVRLTNYN 1126 (1156)
T ss_pred CceEEEecCccceeeeeccccceEEEEEEEEeccccccCceeeccccc
Confidence 358999999999884433335888999999999999999999997544
No 42
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=46.83 E-value=55 Score=29.46 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=52.0
Q ss_pred CCCccCCCCcccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEE
Q 013971 78 SADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVE 157 (433)
Q Consensus 78 ~~~~~~~~~~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~ 157 (433)
....-||+=....+.+-- +|-.-.-+..|.+.|.++.++++|.|.-.=.....++.- ..+++.|.||+++..++.
T Consensus 63 ~v~G~GL~v~Y~F~RqP~-~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~----F~~I~~L~pg~s~t~~lg 137 (145)
T PF14796_consen 63 RVNGKGLSVEYRFSRQPS-LYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHE----FPEIESLEPGASVTVSLG 137 (145)
T ss_pred ccCCCceeEEEEEccCCc-CCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeec----cCcccccCCCCeEEEEEE
Confidence 344445554444444211 344555668888999999999999887543333333322 345778999999998888
Q ss_pred EEccc
Q 013971 158 HDVKE 162 (433)
Q Consensus 158 ~~lke 162 (433)
.++.+
T Consensus 138 IDF~D 142 (145)
T PF14796_consen 138 IDFND 142 (145)
T ss_pred Eeccc
Confidence 77654
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.29 E-value=1.2e+02 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=19.5
Q ss_pred cccCCCCeeeEEEEEEccc--ccceEEEE
Q 013971 144 ESIRAGGRYDFIVEHDVKE--LGAHTLVC 170 (433)
Q Consensus 144 ~~L~pg~~ld~iv~~~lke--~G~h~L~c 170 (433)
..|+||+++.+-...+.+. .|.|+|..
T Consensus 54 ~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 54 ETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 3699999999999999988 89998863
No 44
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=44.65 E-value=41 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=26.4
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEEe
Q 013971 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQ 127 (433)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvelq 127 (433)
+..|+++.-.|.+.|.....+++|.|.=.|-
T Consensus 8 ~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP 38 (53)
T TIGR01451 8 ATIGDTITYTITVTNNGNVPATNVVVTDILP 38 (53)
T ss_pred cCCCCEEEEEEEEEECCCCceEeEEEEEcCC
Confidence 6789999999999999999999988775443
No 45
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=41.66 E-value=2.9e+02 Score=27.80 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=31.3
Q ss_pred ccccCCCCeeeEEEEEEcccccceEEEEEEEEEcCCCceeecCee
Q 013971 143 VESIRAGGRYDFIVEHDVKELGAHTLVCTALYSDGEGERKYLPQF 187 (433)
Q Consensus 143 ~~~L~pg~~ld~iv~~~lke~G~h~L~c~V~Y~~~~ge~~~frK~ 187 (433)
++-|.||+++..-++|---..|.|.|-.-=-+-...||..-+|+.
T Consensus 257 iGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvvDl~t~e~~di~~l 301 (306)
T PF12735_consen 257 IGPLAPGACYSVELRFIALSPGVHNLEGLKVVDLNTNEHVDIGDL 301 (306)
T ss_pred ccccCCCceEEEEEEEEEeccceEeecceEEEECCCCceEEeCCC
Confidence 456889999999999988999999774322233345666555554
No 46
>COG1470 Predicted membrane protein [Function unknown]
Probab=40.48 E-value=5e+02 Score=27.98 Aligned_cols=58 Identities=7% Similarity=0.135 Sum_probs=41.1
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEE
Q 013971 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNL 402 (433)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l 402 (433)
..-++--.+.+.|.|.-+-++.++.|.++.-. + =.+.+.+. .++.|+|+.+.+++++.
T Consensus 393 ~taGee~~i~i~I~NsGna~LtdIkl~v~~Pq--g-Wei~Vd~~---~I~sL~pge~~tV~ltI 450 (513)
T COG1470 393 ITAGEEKTIRISIENSGNAPLTDIKLTVNGPQ--G-WEIEVDES---TIPSLEPGESKTVSLTI 450 (513)
T ss_pred ecCCccceEEEEEEecCCCccceeeEEecCCc--c-ceEEECcc---cccccCCCCcceEEEEE
Confidence 45667777888899998777776666665432 1 12444444 58889999999999985
No 47
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=40.25 E-value=1.9e+02 Score=23.07 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=45.8
Q ss_pred eeecceeeEEEEEEcCCCCcee--eEEEEEEEeCCCce-----eeccCCCCCCccccCCCCeeeEEEEEEcccccceEEE
Q 013971 97 IYLGETFCSYISINNSSTLEVR--DVVIKAEIQTDKQR-----ILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLV 169 (433)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~--~V~ikvelqT~s~r-----~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~ 169 (433)
+.+|+....+|...+.....+. ...+.|.+..++.. +.. + +.+...| ...++|..++.|.|.|.
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~-~-----v~~~~~G---~y~v~y~p~~~G~y~i~ 87 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPV-E-----VIDNGDG---TYTVSYTPTEPGKYKIS 87 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEE-E-----EEEESSS---EEEEEEEESSSEEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccce-E-----EEECCCC---EEEEEEEeCccEeEEEE
Confidence 4889999999999988655443 34566777777554 211 0 1122222 46899999999999998
Q ss_pred EEE
Q 013971 170 CTA 172 (433)
Q Consensus 170 c~V 172 (433)
+.+
T Consensus 88 V~~ 90 (101)
T PF00630_consen 88 VKI 90 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 48
>PF15146 FANCAA: Fanconi anemia-associated
Probab=35.13 E-value=66 Score=33.70 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=53.3
Q ss_pred eEEEEEecCceEEeCCcEEEEEEEEeCCCCcccc---EEEEEEeCCCCCceeEEEec-----ccceeeeeeCCCCeEEEE
Q 013971 328 IELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGP---FEIWLSQNDSDEEKVVMING-----LRIMALAPVEAFGSTDFH 399 (433)
Q Consensus 328 l~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~---l~v~l~~~~~~~~~~~~~~G-----~~~~~Lg~L~P~~s~~~~ 399 (433)
|...++--=+...+..-.+++|.+.|.|+-.++. |-|.+.... .+.--.| .-.+++..|.||+.++|+
T Consensus 59 I~C~~tt~WSrll~qD~L~~tCvLeNsS~~sLe~GWtLCiqv~~~s----~~~~~~~~~SattytfPv~~L~PG~~~EVt 134 (435)
T PF15146_consen 59 ISCTVTTSWSRLLLQDSLTATCVLENSSDFSLERGWTLCIQVLSSS----CALDTDSASSATTYTFPVDNLGPGERREVT 134 (435)
T ss_pred ceeEEechhhHHHhhcceeeEEEEecCCCccccCCceEEEEeccCC----CCcccCCCCCceeEEEEcccCCCCceeEEE
Confidence 4444432223345666788999999999887762 445444321 0111111 224678899999999999
Q ss_pred EEEEecccceEEeCc
Q 013971 400 LNLIATKLGVQRITG 414 (433)
Q Consensus 400 L~l~pl~~Glq~isg 414 (433)
|.|-|-..|--.+|=
T Consensus 135 LPLg~~~~g~l~lPv 149 (435)
T PF15146_consen 135 LPLGPAEDGKLDLPV 149 (435)
T ss_pred EecCccccccccccE
Confidence 999888888766663
No 49
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=34.95 E-value=1.3e+02 Score=28.91 Aligned_cols=80 Identities=11% Similarity=0.104 Sum_probs=55.6
Q ss_pred EeCCcEE----EEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCce
Q 013971 340 GIDKPFL----LKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGI 415 (433)
Q Consensus 340 ~v~~PF~----v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI 415 (433)
.+..||+ --+.|.|++...+. +.| ... ++-+++.-+ .-|.|+|++.+.+...|.+|.- -..++.
T Consensus 10 ~fy~Plt~~ske~~sv~Nnspepvg-fKV--KTT----aPK~YcVRP---N~g~Iep~stv~VeVilq~l~e--Epapdf 77 (242)
T COG5066 10 TFYVPLTNKSKEMFSVQNNSPEPVG-FKV--KTT----APKDYCVRP---NMGLIEPMSTVEVEVILQGLTE--EPAPDF 77 (242)
T ss_pred EEecccccccceeeEeecCCCCcee-EEe--ecc----CCcceeEcC---CCceeccCCeeEEEEEeecccc--CCCCCc
Confidence 3444555 45678899888776 444 332 223444433 3678999999999999887764 457888
Q ss_pred EEEeCCCCeEEeecCC
Q 013971 416 TVFDKLEKITYDSLPD 431 (433)
Q Consensus 416 ~l~D~~~~~~y~~~~~ 431 (433)
++-|+++=++|.|=.+
T Consensus 78 KCrdKFLiqs~~~~~~ 93 (242)
T COG5066 78 KCRDKFLIQSYRFDWR 93 (242)
T ss_pred cccceeEEEEeccChh
Confidence 8999999988887544
No 50
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=34.55 E-value=1.1e+02 Score=25.95 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=49.1
Q ss_pred ceEEeCCcEEEEEEEEeCCC-CccccEEEEEEeCCCCCceeEEEeccc----ceeeeeeC-CCCeEEEEEEEEecccceE
Q 013971 337 SVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGLR----IMALAPVE-AFGSTDFHLNLIATKLGVQ 410 (433)
Q Consensus 337 ~~v~v~~PF~v~~~v~N~s~-r~~~~l~v~l~~~~~~~~~~~~~~G~~----~~~Lg~L~-P~~s~~~~L~l~pl~~Glq 410 (433)
+.+..++++.+++.+....+ .... +.+.+...+ +..+.|.. ...+.... -..+.++.+... |.+|--
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~-~~~~i~~~~-----g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~-L~~G~Y 101 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPV-FGFAIRDSD-----GQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKP-LNPGEY 101 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEE-EEEEEEETT-------EEEEEEHHHHT--EEE-TT-EEEEEEEEE---B-SEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccE-EEEEEEcCC-----CCEEEEECccccCccccccCCCEEEEEEEEcCc-cCCCeE
Confidence 45789999999999998633 2333 666676654 44444322 22454442 223666677778 999988
Q ss_pred EeCceEEEeCCCCeEEeecCC
Q 013971 411 RITGITVFDKLEKITYDSLPD 431 (433)
Q Consensus 411 ~isgI~l~D~~~~~~y~~~~~ 431 (433)
.|+=--..+......|+++.+
T Consensus 102 ~i~v~l~~~~~~~~~~d~~~~ 122 (142)
T PF14524_consen 102 SISVGLGDDSSGGEVLDWIED 122 (142)
T ss_dssp EEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEecCCCCEEEEEECC
Confidence 887522235666667776543
No 51
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=33.38 E-value=2.1e+02 Score=29.84 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=48.1
Q ss_pred EEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccc-cceEEEE--EEEEEcCCCcee
Q 013971 106 YISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL-GAHTLVC--TALYSDGEGERK 182 (433)
Q Consensus 106 ~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~-G~h~L~c--~V~Y~~~~ge~~ 182 (433)
.+.+.=.+...+++|.+.+..+.| +.. +...-.+..+.+|.+-...+.+-+++. =.+.+.+ .++|+...|..|
T Consensus 2 ~v~v~~~~~~~~~~v~v~v~~~~P---l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~pssl~v~v~asy~~~~G~~r 77 (377)
T PF14728_consen 2 TVKVTLKSRSTLENVQVSVVVDPP---LAC-SQDTFVFENISPGSSQTVEISFYVSGSLPPSSLEVTVVASYTTPTGIPR 77 (377)
T ss_pred eEEEEEecceeeEeeEEEEEeCCC---Eee-cCCeEEEEecCCCCcEEEEEEEEeCCCcCCccceEEEEEEEECCCccce
Confidence 344444445577888887777776 211 111122456788777666666666553 2345544 458999888877
Q ss_pred ecCeeEE
Q 013971 183 YLPQFFK 189 (433)
Q Consensus 183 ~frK~yk 189 (433)
...+.++
T Consensus 78 v~~~~~~ 84 (377)
T PF14728_consen 78 VVQCTFD 84 (377)
T ss_pred eeEEEEE
Confidence 7666544
No 52
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=9.9e+02 Score=29.59 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=53.7
Q ss_pred eEEEEEEEEcCCCCCeeeeEEeeeeccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCce
Q 013971 296 LGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEK 375 (433)
Q Consensus 296 lG~L~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~ 375 (433)
++.-.+.=-+-.-++|...+.+-. .-...++-+. +++|-.|+.++-|.+...|.|+-+..++ +.|.+..++
T Consensus 733 iT~W~~~~f~ls~~~Gl~v~~~~~--l~~fQpfFi~-l~lPySV~RgE~i~l~~tv~NYl~k~~~-v~V~l~~~~----- 803 (1436)
T KOG1366|consen 733 ITTWVASGFSLSEDKGLGVAPTTS--LRVFQPFFIE-LNLPYSVRRGEQIALRVTVFNYLTKELD-VSVILLSSE----- 803 (1436)
T ss_pred cceEEEEEEEEcCCceeEecCCce--EEEeeceeEE-ecCceeEEeCcEeEEeEEEecccCcceE-EEEEEccCC-----
Confidence 444444333445568887766543 3334444344 5899999999999999999999888888 888887754
Q ss_pred eEEEec
Q 013971 376 VVMING 381 (433)
Q Consensus 376 ~~~~~G 381 (433)
++.|+.
T Consensus 804 ~~~~~~ 809 (1436)
T KOG1366|consen 804 DFCYDA 809 (1436)
T ss_pred Ceeeec
Confidence 565654
No 53
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=31.96 E-value=1.6e+02 Score=22.55 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=34.4
Q ss_pred ccCccCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEe
Q 013971 321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQ 368 (433)
Q Consensus 321 ~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~ 368 (433)
......++.+.-..-+..+.+++.+.+++.++|.....+. -+.+..
T Consensus 19 ~~~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~--nv~v~D 64 (76)
T PF01345_consen 19 TVVAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPAT--NVVVTD 64 (76)
T ss_pred eccCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeE--eEEEEE
Confidence 3455566766666678889999999999999999777654 355544
No 54
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=31.54 E-value=1.5e+02 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=28.7
Q ss_pred cCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEE
Q 013971 335 VPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQR 411 (433)
Q Consensus 335 ~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~ 411 (433)
-|+.+.+..==.+++.++|..++.-+ +.+ .+. ... ..|.||++.++.+ -|.++|-..
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~h~---~~i-------------~~~-~~~-~~l~~g~~~~~~f--~~~~~G~y~ 89 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRPHE---FVI-------------PDL-GIS-KVLPPGETATVTF--TPLKPGEYE 89 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS-EE---EEE-------------GGG-TEE-EEE-TT-EEEEEE--EE-S-EEEE
T ss_pred ecCEEEEcCCCeEEEEEEECCCCcEE---EEE-------------CCC-ceE-EEECCCCEEEEEE--cCCCCEEEE
Confidence 47776655544455667888666432 322 222 122 4689999987776 477877543
No 55
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=31.20 E-value=1.7e+02 Score=25.66 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=37.1
Q ss_pred eCCcEEEEEEEEeCCCCccc--cEEEEEEeCCCCCceeEEEec-----ccceeeeeeCCCCeEEEEEEEEe
Q 013971 341 IDKPFLLKLKLTNQTDKEQG--PFEIWLSQNDSDEEKVVMING-----LRIMALAPVEAFGSTDFHLNLIA 404 (433)
Q Consensus 341 v~~PF~v~~~v~N~s~r~~~--~l~v~l~~~~~~~~~~~~~~G-----~~~~~Lg~L~P~~s~~~~L~l~p 404 (433)
-..-|.++..|+|++++... .+++.+...+........+.= .....-..|.||++..|.+.+.-
T Consensus 66 ~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 45568899999999887654 266666554311010111100 00001335899999999997763
No 56
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=29.60 E-value=1.4e+02 Score=25.17 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCCccccEEEEEEeCCCC--------CceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCc
Q 013971 346 LLKLKLTNQTDKEQGPFEIWLSQNDSD--------EEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (433)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~v~l~~~~~~--------~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (433)
.+++.|+|..||.+. +-=..+.-+.+ .+.+.-.+=+++-.+ ..+||.++++.| +|+ .|-+.|.|
T Consensus 21 ~~~l~V~NtGDRPIQ-VGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTav-RFEPG~~k~V~L--V~~-gG~r~v~G 92 (101)
T TIGR00192 21 TVSVKVKNTGDRPIQ-VGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAV-RFEPGEEKSVEL--VAI-GGNRRIYG 92 (101)
T ss_pred EEEEEEEeCCCcceE-EccccchhhcCcceeecHhhhcCcccccCCCCeE-eECCCCeEEEEE--EEc-cCceEEEc
Confidence 378889999999754 22122211110 111222222222233 468888887766 443 35555555
No 57
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=29.32 E-value=1.8e+02 Score=23.31 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=28.1
Q ss_pred EEEeecCeEEEEEE---EEeCCeeEEEEEEEecCcccEEE
Q 013971 189 KFIVSNPLSVRTKV---RVVKEITFLEACIENHTKSNLYM 225 (433)
Q Consensus 189 kF~v~~Pl~VrTK~---~~~~~~~~LEaqiqN~s~~pl~l 225 (433)
+|.|.+||-|+..+ ...+|++.+.+.|.|-++..+-+
T Consensus 49 ~~~v~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v 88 (92)
T PF00207_consen 49 EITVFKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEV 88 (92)
T ss_dssp EEEEB-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEE
T ss_pred EEEEEeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEE
Confidence 89999999999876 34589999999999999877654
No 58
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=28.90 E-value=2.5e+02 Score=29.85 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=56.9
Q ss_pred ccCCeEEEEEecCceEEeCC-----cEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEE
Q 013971 324 TSKEIELNVVEVPSVVGIDK-----PFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDF 398 (433)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~-----PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~ 398 (433)
.+.++++.|...+....++. -=..+++|.|.+++... +.+.++..+ +..+.+... .+ .++|++..++
T Consensus 322 ~r~~~~~~v~r~r~~l~~~~~~g~i~N~Y~~~i~Nk~~~~~~-~~l~v~g~~-----~~~~~~~~~-~i-~v~~g~~~~~ 393 (434)
T TIGR02745 322 TREPMDLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQPHE-YYLSVLGLP-----GIKIEGPGA-PI-HVKAGEKVKL 393 (434)
T ss_pred CCCceEEEEEecCCcceEECCCCcEEEEEEEEEEECCCCCEE-EEEEEecCC-----CcEEEcCCc-eE-EECCCCEEEE
Confidence 47888888866655332221 11367889999999887 888876532 455555422 44 6899999988
Q ss_pred EEEEEe----cccceEEeCceEEEeCC
Q 013971 399 HLNLIA----TKLGVQRITGITVFDKL 421 (433)
Q Consensus 399 ~L~l~p----l~~Glq~isgI~l~D~~ 421 (433)
.+.+.. +..|.+.+. +++.|..
T Consensus 394 ~v~v~~~~~~~~~~~~~i~-~~v~~~~ 419 (434)
T TIGR02745 394 PVFLRTPPDALKSGITSIE-IRAYAED 419 (434)
T ss_pred EEEEEechhhccCCceeEE-EEEEECC
Confidence 888765 445555433 3455543
No 59
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=28.72 E-value=1.1e+02 Score=24.97 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=25.9
Q ss_pred ccccCCCCeeeEEEEEE--cccccceEEEEEEEEEcCCCce
Q 013971 143 VESIRAGGRYDFIVEHD--VKELGAHTLVCTALYSDGEGER 181 (433)
Q Consensus 143 ~~~L~pg~~ld~iv~~~--lke~G~h~L~c~V~Y~~~~ge~ 181 (433)
++.+.++.++.+.++++ +++...-.+.+.+.|++.+|++
T Consensus 44 ~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~~G~r 84 (96)
T PF08033_consen 44 LPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDSNGER 84 (96)
T ss_dssp EEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEETTSEE
T ss_pred ecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECCCCCE
Confidence 34567777777776665 2333456788999999999984
No 60
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=28.67 E-value=87 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEE
Q 013971 97 IYLGETFCSYISINNSSTLEVRDVVIKA 124 (433)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikv 124 (433)
...||+....+.+.|.+...|+.+.++.
T Consensus 16 ~~~Ge~i~v~v~i~n~s~~~i~~I~v~L 43 (136)
T PF02752_consen 16 YVPGETIPVNVEIDNQSKKKIKKIKVSL 43 (136)
T ss_dssp EETT--EEEEEEEEE-SSSEEEEEEEEE
T ss_pred ECCCCEEEEEEEEEECCCCEEEEEEEEE
Confidence 4679999999999999999999887776
No 61
>PRK13202 ureB urease subunit beta; Reviewed
Probab=28.64 E-value=1.4e+02 Score=25.33 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=32.9
Q ss_pred EEEEEEEEeCCCCccccEEEEEEeCCCC--------CceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCce
Q 013971 345 FLLKLKLTNQTDKEQGPFEIWLSQNDSD--------EEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITGI 415 (433)
Q Consensus 345 F~v~~~v~N~s~r~~~~l~v~l~~~~~~--------~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isgI 415 (433)
=.++++|+|..||.+. +-=..+.-+.+ .+-+.-.+=+++-.+ ..+||.++++.| +|+ .|-+.|.|.
T Consensus 21 ~~~~l~V~NtGDRPIQ-VGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTav-RFEPG~~k~V~L--V~~-gG~r~v~G~ 94 (104)
T PRK13202 21 SRLQMRIINAGDRPVQ-VGSHVHLPQANRALSFDRATAHGYRLDIPAATAV-RFEPGIPQIVGL--VPL-GGRREVPGL 94 (104)
T ss_pred ceEEEEEEeCCCCceE-EccccchhhcCcceeecHhHhcCcccccCCCCeE-EECCCCeEEEEE--EEc-cCCeEEEcC
Confidence 3678899999999754 22222221110 111222222222233 467888777766 343 355555553
No 62
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=25.66 E-value=33 Score=16.45 Aligned_cols=7 Identities=43% Similarity=0.814 Sum_probs=5.0
Q ss_pred eecCCCC
Q 013971 427 DSLPDLE 433 (433)
Q Consensus 427 ~~~~~~~ 433 (433)
||||+.|
T Consensus 3 eYLpP~~ 9 (9)
T PF02757_consen 3 EYLPPVE 9 (9)
T ss_pred cccCCCC
Confidence 6788765
No 63
>PRK13736 conjugal transfer protein TraK; Provisional
Probab=25.28 E-value=1e+02 Score=30.14 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.3
Q ss_pred cCceEEeCCcEE-EEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeee----eCCCCeEEEEE
Q 013971 335 VPSVVGIDKPFL-LKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAP----VEAFGSTDFHL 400 (433)
Q Consensus 335 ~P~~v~v~~PF~-v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~----L~P~~s~~~~L 400 (433)
.|+.++.+.-|. +.++|+|.+...+. |.. ..|..-|.+.+.+.. |.||++..+.+
T Consensus 176 ~~~~~~~G~~l~g~~y~l~N~~~~~v~-----L~E------~~F~~~gvrAVa~~~~~~~L~PG~~t~vyV 235 (245)
T PRK13736 176 TADRVWTGNHLKVVRYRVENPTLSARN-----LRE------SDFWQPGTRAVMFSQPARQLLAGGRMDVYV 235 (245)
T ss_pred EEEEEEECCCcEEEEEEEEcCCCCCeE-----ech------HHhCCCCceEEEecCCcccCCCCCEEEEEE
Confidence 567788888887 67889999888755 433 246777777776654 99999999876
No 64
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.96 E-value=5.9e+02 Score=27.44 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=46.8
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecc---cceEEe
Q 013971 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK---LGVQRI 412 (433)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~---~Glq~i 412 (433)
+..+.-+.+.++|.|+...... +.|.++.-+.+=..-|..-+.+--.+ +|.||.+.+|.+.+.|-. +|.-.+
T Consensus 280 i~~~~t~sf~V~IeN~g~~~d~-y~Le~~g~pe~w~~~Fteg~~~vt~v-kL~~gE~kdvtleV~ps~na~pG~Ynv 354 (513)
T COG1470 280 ISPSTTASFTVSIENRGKQDDE-YALELSGLPEGWTAEFTEGELRVTSV-KLKPGEEKDVTLEVYPSLNATPGTYNV 354 (513)
T ss_pred EccCCceEEEEEEccCCCCCce-eEEEeccCCCCcceEEeeCceEEEEE-EecCCCceEEEEEEecCCCCCCCceeE
Confidence 4566788999999999776655 55555522211112355444444455 899999999999999864 555444
No 65
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.78 E-value=2.3e+02 Score=23.38 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=38.2
Q ss_pred ceeeEEEEEEcCCCCceeeEEEEEEEeCCCce-eec--cCCCC---CCccccCCCCeeeEEEEEEcccccc-eEEEE
Q 013971 101 ETFCSYISINNSSTLEVRDVVIKAEIQTDKQR-ILL--LDTSK---SPVESIRAGGRYDFIVEHDVKELGA-HTLVC 170 (433)
Q Consensus 101 EtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r-~~L--~~~~~---~~~~~L~pg~~ld~iv~~~lke~G~-h~L~c 170 (433)
+.....+.|.|.++.++.--.....|.+...+ ... ..... ....+|.||++.+..+.|++..-.. ..|..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 34567889999887766433335666655532 221 11111 1235899999999999999988766 66665
No 66
>PRK13201 ureB urease subunit beta; Reviewed
Probab=24.67 E-value=1.6e+02 Score=26.02 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCccccEEEEEEeCCCC--------CceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCc
Q 013971 347 LKLKLTNQTDKEQGPFEIWLSQNDSD--------EEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (433)
Q Consensus 347 v~~~v~N~s~r~~~~l~v~l~~~~~~--------~~~~~~~~G~~~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (433)
+++.|+|..||++. +-=..+.-..+ .+-++-.+=+++-.+ ..+||.+++|.| +|+ .|-+.|.|
T Consensus 22 ~~l~V~NtGDRPIQ-VGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAV-RFEPG~~k~V~L--V~i-gG~r~V~G 92 (136)
T PRK13201 22 TVIEVENTGDRPIQ-VGSHFHFYEANAALDFEREMAYGKHLDIPAGAAV-RFEPGDKKEVQL--VEY-AGKRKIFG 92 (136)
T ss_pred EEEEEEeCCCcceE-eccccchhhcCccccccHhhhcCcccccCCCCeE-eECCCCeEEEEE--EEc-cCceEEEc
Confidence 78889999999754 22112111110 111222222222233 467777777765 444 35555555
No 67
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=24.29 E-value=3.2e+02 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.7
Q ss_pred EEEEEEEEeCCCCccccEEEEEE
Q 013971 345 FLLKLKLTNQTDKEQGPFEIWLS 367 (433)
Q Consensus 345 F~v~~~v~N~s~r~~~~l~v~l~ 367 (433)
..+.|.|+|++.+.+..+.+.++
T Consensus 19 ~qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 19 TQYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEEECCCCeEEEEEEEEC
Confidence 45889999999988876777776
No 68
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=22.97 E-value=4.9e+02 Score=28.39 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=51.4
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEE
Q 013971 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (433)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (433)
.-+.+|-||+|.+-|.+...++.. .|. +.+ +. .++ ..++ +-++.+..--+|.|.+.-.+
T Consensus 242 ~s~~v~~Ge~~~a~vvL~a~ds~~-----------~P~--~~v-nG--~~l---~~~G--~g~~~~~aggvGe~~i~G~i 300 (523)
T TIGR03517 242 KSDAVFAGETYEAEVVLGASDSTL-----------QPT--MFV-NG--QLL---TVEG--IGVYTFKAGGVGKQTWKGQI 300 (523)
T ss_pred CCceeecCCeEEEEEEEEecCCCc-----------Cce--EEE-CC--eEc---ccCC--cEEEEEecCCceeEEEEEEE
Confidence 346789999999999998764220 110 122 11 111 1111 12355555589999999999
Q ss_pred EEEcCCCceeecCeeEEEEeecC
Q 013971 173 LYSDGEGERKYLPQFFKFIVSNP 195 (433)
Q Consensus 173 ~Y~~~~ge~~~frK~ykF~v~~P 195 (433)
.|.+ +|+...++--.+|.|.+|
T Consensus 301 ~~~~-~G~~~~~~~~~~Y~Vi~~ 322 (523)
T TIGR03517 301 KIKE-NGKDTRRSFSEDYFVVKP 322 (523)
T ss_pred EEec-CCcEEEEecceeEEEecc
Confidence 9996 898766666678888753
No 69
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=22.86 E-value=4e+02 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=34.2
Q ss_pred EEEEEEEeCCCCccccEEEEEEeC---C-CCCceeEEEecccceeeeeeCCCCeEEEEE
Q 013971 346 LLKLKLTNQTDKEQGPFEIWLSQN---D-SDEEKVVMINGLRIMALAPVEAFGSTDFHL 400 (433)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~v~l~~~---~-~~~~~~~~~~G~~~~~Lg~L~P~~s~~~~L 400 (433)
...+.|+|.+++.+- +++++... + ....+.|++.=. +-.|+||++..|.+
T Consensus 17 ~~~i~v~N~~~~~~~-vq~~v~~~~~~~~~~~~~~~~vsPp----~~~L~pg~~q~vRv 70 (122)
T PF00345_consen 17 SASITVTNNSDQPYL-VQVWVYDQDDEDEDEPTDPFIVSPP----IFRLEPGESQTVRV 70 (122)
T ss_dssp EEEEEEEESSSSEEE-EEEEEEETTSTTSSSSSSSEEEESS----EEEEETTEEEEEEE
T ss_pred EEEEEEEcCCCCcEE-EEEEEEcCCCcccccccccEEEeCC----ceEeCCCCcEEEEE
Confidence 678899999998887 88888761 1 112236665543 33578888888777
No 70
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=22.83 E-value=4.6e+02 Score=23.78 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=52.9
Q ss_pred eEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCC---------CCccccCCCCeeeEEEEEEcccccceEEEEEEEE
Q 013971 104 CSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSK---------SPVESIRAGGRYDFIVEHDVKELGAHTLVCTALY 174 (433)
Q Consensus 104 ~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~---------~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V~Y 174 (433)
.+|+.+.|+++.+++-|.++.+. ..|+.|.+... .+.-.|.+|++++ +|-=|-|++.--+.=
T Consensus 44 a~~~ti~N~~~~~~~Lv~v~s~~---a~~~ElHe~i~~~gvmkMr~v~~i~Ipa~~~v~------lkpGgyHvMlm~lK~ 114 (151)
T COG2847 44 AAFMTITNNGDKDDRLVGVSSPI---AARAELHETIHDGGVMKMRKVPGIVIPAGGTVE------LKPGGYHVMLMGLKK 114 (151)
T ss_pred eEEEEEeCCCCCCceEEEEecCc---cceeEEEEEEecCCeEEEEEcCcEEECCCceEE------ecCCCEEEEEeccCC
Confidence 48999999999988888776544 34454432111 1222567788774 788888988765432
Q ss_pred EcCCCceeecCeeEEEEeecCeEEEEEEE
Q 013971 175 SDGEGERKYLPQFFKFIVSNPLSVRTKVR 203 (433)
Q Consensus 175 ~~~~ge~~~frK~ykF~v~~Pl~VrTK~~ 203 (433)
-...|+ .|..-++|..-....|+-++.
T Consensus 115 pl~eGd--~v~vtL~f~~~~~~~v~~~v~ 141 (151)
T COG2847 115 PLKEGD--KVPVTLKFEKAGKVTVEAPVK 141 (151)
T ss_pred CccCCC--EEEEEEEEecCCeEEEEEEEe
Confidence 222344 344445555555555554443
No 71
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=22.45 E-value=2e+02 Score=25.28 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=21.9
Q ss_pred eEEEEEEEecCc-ccEEEEeEEeeecC
Q 013971 209 TFLEACIENHTK-SNLYMDQVEFEPSQ 234 (433)
Q Consensus 209 ~~LEaqiqN~s~-~pl~le~v~lep~~ 234 (433)
..+.+.++|.+. ..++|++++|-|.+
T Consensus 117 ~~~~i~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 117 ITITISIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEEEEEEESSTTTS-EEEEEEEEEECT
T ss_pred eEEEEEEEecCCCCeEEEEeEEEEeCC
Confidence 667889999988 99999999999864
No 72
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.29 E-value=1.8e+02 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=14.1
Q ss_pred eeCCCCeEEEEEEEEecccceEEeCc
Q 013971 389 PVEAFGSTDFHLNLIATKLGVQRITG 414 (433)
Q Consensus 389 ~L~P~~s~~~~L~l~pl~~Glq~isg 414 (433)
..+||.+.+|.| +|+ .|-+.|.|
T Consensus 93 RFEPG~~k~V~L--V~~-gG~r~V~G 115 (159)
T PRK13204 93 RFEPGDEKEVTL--VPF-AGKRFIFG 115 (159)
T ss_pred eECCCCeeEEEE--EEc-cCceEEEc
Confidence 467777777765 444 35555555
No 73
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.13 E-value=2.6e+02 Score=32.87 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred EeCCcEEEEEEEEeC--CCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCe-EEEEEEEEecccceEEeCceE
Q 013971 340 GIDKPFLLKLKLTNQ--TDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGS-TDFHLNLIATKLGVQRITGIT 416 (433)
Q Consensus 340 ~v~~PF~v~~~v~N~--s~r~~~~l~v~l~~~~~~~~~~~~~~G~~~~~Lg~L~P~~s-~~~~L~l~pl~~Glq~isgI~ 416 (433)
.|++|-.|+|+|.|. .|-.++++.+..+... ...+. +.+ .++|... .++.|.-+|+..|=..|.|-+
T Consensus 690 Vvdepvef~v~v~Np~~fdl~V~Di~L~~egvn---F~~~~------vs~-~~Ppns~~e~Irl~g~P~e~gpl~i~gy~ 759 (1235)
T KOG1953|consen 690 VVDEPVEFSVYVRNPLSFDLEVQDIHLETEGVN---FKCSH------VSF-TMPPNSIAERIRLTGTPTETGPLHIVGYR 759 (1235)
T ss_pred EeCCceEEEEEEcCccceeEEEeeEEEEecccc---ceeee------eee-ecCcccccceEEEeccccccCceeeeeEE
Confidence 479999999999997 4444443444443321 11221 334 5688887 899999999999999999966
Q ss_pred EE
Q 013971 417 VF 418 (433)
Q Consensus 417 l~ 418 (433)
+.
T Consensus 760 v~ 761 (1235)
T KOG1953|consen 760 VK 761 (1235)
T ss_pred EE
Confidence 63
No 74
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=20.85 E-value=67 Score=31.86 Aligned_cols=33 Identities=42% Similarity=0.661 Sum_probs=24.7
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeecc
Q 013971 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL 136 (433)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~ 136 (433)
|||.||+|+. ++|- ..|.||+|-++......+.
T Consensus 27 SFGdIy~~~~------i~~g-----e~VAiK~Es~~a~hpqL~y 59 (341)
T KOG1163|consen 27 SFGDIYLGIS------ITSG-----EEVAIKLESSKAKHPQLLY 59 (341)
T ss_pred chhheeeeee------ccCC-----ceEEEEeecccCCCcchhH
Confidence 8999999964 4444 5789999988877665443
No 75
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.41 E-value=2.1e+02 Score=25.99 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=14.8
Q ss_pred eeCCCCeEEEEEEEEecccceEEeCce
Q 013971 389 PVEAFGSTDFHLNLIATKLGVQRITGI 415 (433)
Q Consensus 389 ~L~P~~s~~~~L~l~pl~~Glq~isgI 415 (433)
..+||.+.+|.| +|+ .|-+.|.|.
T Consensus 98 RFEPG~~k~V~L--V~~-gG~r~V~Gf 121 (158)
T PRK13198 98 RFEPGDETEVPL--IPF-GGKQTLYGF 121 (158)
T ss_pred eeCCCCeeEEEE--EEc-cCceEEEcc
Confidence 467887777765 444 366666653
No 76
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=20.23 E-value=5.9e+02 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=29.1
Q ss_pred cceeeEEEEEEcCCCCceeeEEEEEEEeCCCcee
Q 013971 100 GETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI 133 (433)
Q Consensus 100 GEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~ 133 (433)
|--|..-+.++|+....+..|.|.+||..+....
T Consensus 48 ~gqyyVpF~V~N~gg~TAasV~V~geL~~~~~v~ 81 (122)
T TIGR02588 48 TGQYYVPFAIHNLGGTTAAAVNIRGELRQAGAVV 81 (122)
T ss_pred CCEEEEEEEEEeCCCcEEEEEEEEEEEccCCcee
Confidence 3348889999999999999999999999986543
Done!