Query 013972
Match_columns 433
No_of_seqs 211 out of 610
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 00:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2574 mRNA splicing factor P 100.0 1E-142 3E-147 1075.5 21.5 416 6-421 38-459 (492)
2 COG1498 SIK1 Protein implicate 100.0 1E-80 2.3E-85 630.3 22.6 285 55-346 108-395 (395)
3 PRK14552 C/D box methylation g 100.0 1.7E-76 3.8E-81 609.9 22.5 260 56-318 132-396 (414)
4 KOG2573 Ribosome biogenesis pr 100.0 3.5E-68 7.6E-73 533.6 18.4 250 54-303 158-412 (498)
5 KOG2572 Ribosome biogenesis pr 100.0 2E-65 4.4E-70 513.7 17.5 254 54-307 149-402 (498)
6 PF01798 Nop: Putative snoRNA 100.0 4.2E-55 9E-60 396.5 6.5 149 156-304 1-150 (150)
7 PF09785 Prp31_C: Prp31 C term 100.0 5E-46 1.1E-50 326.9 7.3 116 306-421 1-120 (124)
8 PF08060 NOSIC: NOSIC (NUC001) 99.9 8.3E-23 1.8E-27 155.4 6.1 53 64-116 1-53 (53)
9 KOG2014 SMT3/SUMO-activating c 74.5 5.4 0.00012 41.0 5.2 73 132-205 227-303 (331)
10 PF05511 ATP-synt_F6: Mitochon 61.5 15 0.00031 32.0 4.5 51 32-97 38-95 (99)
11 KOG4634 Mitochondrial F1F0-ATP 48.3 66 0.0014 28.0 6.2 61 20-97 22-89 (105)
12 PF13770 DUF4169: Domain of un 34.2 26 0.00057 27.3 1.6 26 327-353 7-32 (55)
13 TIGR03738 PRTRC_C PRTRC system 32.5 25 0.00055 28.4 1.3 17 85-101 27-43 (66)
14 PRK00082 hrcA heat-inducible t 30.1 51 0.0011 34.1 3.5 152 18-178 26-203 (339)
15 PF12347 HJURP_C: Holliday jun 26.7 21 0.00046 28.3 0.0 28 310-338 6-33 (64)
16 PF14454 Prok_Ub: Prokaryotic 24.9 32 0.0007 27.6 0.7 17 85-101 28-44 (65)
17 KOG3365 NADH:ubiquinone oxidor 24.3 27 0.00058 32.1 0.2 38 79-117 46-83 (145)
18 PF05918 API5: Apoptosis inhib 24.1 71 0.0015 35.5 3.4 127 57-191 20-170 (556)
19 PRK10548 flagellar biosynthesi 23.7 4.7E+02 0.01 23.3 7.9 56 143-205 50-105 (121)
20 KOG0407 40S ribosomal protein 21.5 36 0.00078 30.3 0.4 18 313-331 121-138 (139)
21 PRK15058 cytochrome b562; Prov 21.3 3.2E+02 0.0069 24.8 6.4 75 20-94 36-127 (128)
22 PF12491 ApoB100_C: Apolipopro 20.2 3.4E+02 0.0074 21.5 5.4 24 63-89 19-42 (58)
No 1
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=1.3e-142 Score=1075.54 Aligned_cols=416 Identities=59% Similarity=0.906 Sum_probs=398.6
Q ss_pred ccchHhhhhcCCcchhhhHhhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHH
Q 013972 6 DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNF 85 (433)
Q Consensus 6 ~~~~~~~~~~~~~~v~~va~L~~s~~~~~~l~~i~~~~~~~~~~~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~ 85 (433)
+.++..+..+.++||+.|+||++|.+|.++|+++++|+.++.+..+..+++|++|||+|||+||+++++|||||+++|+|
T Consensus 38 ~a~~~~~~~l~~dsv~~v~kL~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~F 117 (492)
T KOG2574|consen 38 DAEMENLLTLTYDSVESVSKLAKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNF 117 (492)
T ss_pred cccccCchhhhhhhHHHHHHHHhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHH
Confidence 33444566778999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHhhccCccccccccChHHHHHHHHHhcCCCCCCccccc--ccCChHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 013972 86 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLE--GLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDR 163 (433)
Q Consensus 86 iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~~dl~~~~L~--~iL~~~~imvis~~Asts~G~~Ls~~dl~~i~~ac~~ 163 (433)
|||||+.|||||+|||++|+||+++|+.|||+.|...++|+ .+||+++||||+|||+||.|..|+++++.+|.+||++
T Consensus 118 ikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~ 197 (492)
T KOG2574|consen 118 IKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEM 197 (492)
T ss_pred HHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887755 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCcchhcCCCchhhhhhhhhcccccccccCCCCCccce
Q 013972 164 ALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGY 243 (433)
Q Consensus 164 ~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL~~LAkmPAcnIq~LGaeK~~~~glst~~~~p~~G~ 243 (433)
+++|+..|++|.+||+|||++||||||+|||+.+||+||++||||+.||+|||||||+||++|++++||++.+..||+||
T Consensus 198 a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gy 277 (492)
T KOG2574|consen 198 AEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGY 277 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchhhhhhccchhccccccccccCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 013972 244 LEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK 323 (433)
Q Consensus 244 Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~~G~~lreeI~~ki~Kl~epP~~k~~K~LP~P~d~~kkk 323 (433)
||+|++||++||++|+||+|+|||||+||||||++|++++|.+|.+||++|++||+||+||||++.+||||+|+|+||||
T Consensus 278 ly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKk 357 (492)
T KOG2574|consen 278 LYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKK 357 (492)
T ss_pred eeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhHHhhhhhHHHHHhhcccccccccccccCCcccccccccCCCCcceeeeccchhhhHHHHHHhhc----ccc
Q 013972 324 RGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKE----KSY 399 (433)
Q Consensus 324 RGGrR~Rk~Ke~~~~t~lrk~~NRm~FG~~ee~~~~~~~~~glGmlg~~~~Gr~r~~~~~~k~~~k~~k~~~~----~~~ 399 (433)
|||||+|||||||+|||+||+||||+||++||+++++++|+||||+|++|+||||.++++.+++++++|+++. +++
T Consensus 358 RgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~~~g~glGmlgksg~Grir~~~vd~~tkarisk~~~~~lq~~q~ 437 (492)
T KOG2574|consen 358 RGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQEDLGEGLGMLGKSGSGRIRGSSVDEKTKARISKKMKKQLQEQQQ 437 (492)
T ss_pred ccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhccccccccccccccCCCceeecccccchhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999877777777777764 344
Q ss_pred CCCCCCCCcccccccccccccc
Q 013972 400 GSSGATSGLTSSLAFTPVQVYI 421 (433)
Q Consensus 400 ~~~~~~~g~asS~afTp~qGle 421 (433)
.++-.|+||+||++|||+||||
T Consensus 438 agg~ttsG~~ss~aftP~qglE 459 (492)
T KOG2574|consen 438 AGGFTTSGTASSVAFTPIQGLE 459 (492)
T ss_pred hCCccccccccccccCcccchh
Confidence 5567789999999999999998
No 2
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-80 Score=630.31 Aligned_cols=285 Identities=38% Similarity=0.558 Sum_probs=272.8
Q ss_pred CCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCCccc---ccccCCh
Q 013972 55 VLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVD---LEGLLPS 131 (433)
Q Consensus 55 ~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~~dl~~~~---L~~iL~~ 131 (433)
..+.+.+|++|||+|+++++||++||.+|+||||||+||||||.+||+++.+|+++|..+||+.++++.. |..++|.
T Consensus 108 ~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~ 187 (395)
T COG1498 108 REEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALPD 187 (395)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcccHHHHHHHHHHHcchhccchhhHHHHhhhcch
Confidence 3577889999999999999999999999999999999999999999999999999999999999988875 4445566
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCcchh
Q 013972 132 AIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSAL 211 (433)
Q Consensus 132 ~~imvis~~Asts~G~~Ls~~dl~~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL~~L 211 (433)
..+.|..+|.+|+|.++++.|+.+|..+|+.+.+|.++|++|.+||+++|+.||||||+|||+.||||||+|||||++|
T Consensus 188 -~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~L 266 (395)
T COG1498 188 -IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRL 266 (395)
T ss_pred -HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHH
Confidence 7888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCcchHHHH
Q 013972 212 AKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFR 291 (433)
Q Consensus 212 AkmPAcnIq~LGaeK~~~~glst~~~~p~~G~Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~~G~~lr 291 (433)
|||||||||+|||||++|++|.+++++||||+||+||+|+.+|+|+|||+||+||||||||||||+|++.+++ ..||
T Consensus 267 Ak~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr 343 (395)
T COG1498 267 AKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISLR 343 (395)
T ss_pred HhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887 9999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccCCcchhhhhHHhhhhhHHHHHhh
Q 013972 292 EEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLAN 346 (433)
Q Consensus 292 eeI~~ki~Kl~epP~~k~~K~LP~P~d~~kkkRGGrR~Rk~Ke~~~~t~lrk~~N 346 (433)
++|++||+++.++|+.+.+|++|.| + +++|.||+.|++|+++.-++.|+.+|
T Consensus 344 ~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r~~~~~~~~~~~~~~~~~~~ 395 (395)
T COG1498 344 EELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGRYRRKKKEKKAKSERRGLQN 395 (395)
T ss_pred HHHHHHHHHHhccCCCCCCcccccc-c--cccCccccccccccccchhhhhhccC
Confidence 9999999999999999999999999 5 88999999999999999999988775
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=1.7e-76 Score=609.89 Aligned_cols=260 Identities=32% Similarity=0.474 Sum_probs=248.8
Q ss_pred CCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCCccccccc-CChHHH
Q 013972 56 LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGL-LPSAII 134 (433)
Q Consensus 56 ~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~~dl~~~~L~~i-L~~~~i 134 (433)
...+..|++|||||+++++||+|||.+|+|||+||+||||||+++|+|+.+|+++|+.++++.+++..+|.++ ++.+++
T Consensus 132 ~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~~i~l~~eka 211 (414)
T PRK14552 132 SAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTREKLKKLGLPENKA 211 (414)
T ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHHhccCCHHHH
Confidence 3455578999999999999999999999999999999999999999999999999999999999988888888 999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCcchhcCC
Q 013972 135 MVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKM 214 (433)
Q Consensus 135 mvis~~Asts~G~~Ls~~dl~~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL~~LAkm 214 (433)
+.|+++|++|+|.++++.|+..|..+|+++++|++.|++|.+||+++|..+|||||+|||+.+|||||++||||.+||+|
T Consensus 212 ~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~Lak~ 291 (414)
T PRK14552 212 RKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEELAKM 291 (414)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCcchHHHHHHH
Q 013972 215 PACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI 294 (433)
Q Consensus 215 PAcnIq~LGaeK~~~~glst~~~~p~~G~Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~~G~~lreeI 294 (433)
||||||+|||+|++|+||++++.+||||||||||+||++|||+||||+|+||+|||||||||+|++ +.+|.+||++|
T Consensus 292 PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l 368 (414)
T PRK14552 292 PASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEEL 368 (414)
T ss_pred CchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 47999999999
Q ss_pred HHHHH----HhcCCCCCCCCCCCCCCCC
Q 013972 295 HKKIE----KWQEPPPAKQPKPLPVPDS 318 (433)
Q Consensus 295 ~~ki~----Kl~epP~~k~~K~LP~P~d 318 (433)
++||+ ||+||||.+..++-|.+..
T Consensus 369 ~~ri~~i~~k~~~Pp~~k~~~~~~~~~~ 396 (414)
T PRK14552 369 NKRIEEIKEKYPKPPKKKREEKKPQKRK 396 (414)
T ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCcc
Confidence 99999 6799999999888555443
No 4
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-68 Score=533.61 Aligned_cols=250 Identities=27% Similarity=0.422 Sum_probs=239.4
Q ss_pred CCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCCccc---ccccC-
Q 013972 54 MVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVD---LEGLL- 129 (433)
Q Consensus 54 ~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~~dl~~~~---L~~iL- 129 (433)
..++.+..+++|+|++.|++++|++||.|.|||||||+||||||..+|+|++.|+++|+.|+|+..++... +-+.|
T Consensus 158 VkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~ 237 (498)
T KOG2573|consen 158 VKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLG 237 (498)
T ss_pred eeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhc
Confidence 45788889999999999999999999999999999999999999999999999999999999998887655 22233
Q ss_pred -ChHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCc
Q 013972 130 -PSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGL 208 (433)
Q Consensus 130 -~~~~imvis~~Asts~G~~Ls~~dl~~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL 208 (433)
+++....|..++.+|||++||+.||.+|..+++++.+|.++|++|..|+..+|+.|||||++|+|..|+||||+|||||
T Consensus 238 ~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsL 317 (498)
T KOG2573|consen 238 VDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSL 317 (498)
T ss_pred CcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhcccc
Confidence 5788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCcchH
Q 013972 209 SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGR 288 (433)
Q Consensus 209 ~~LAkmPAcnIq~LGaeK~~~~glst~~~~p~~G~Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~~G~ 288 (433)
+||||+||||+|+|||||++|++++|+++||+||+||||.+|..+...++|+++|+||+||+||+|||||++.|+..||.
T Consensus 318 tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe 397 (498)
T KOG2573|consen 318 TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGE 397 (498)
T ss_pred chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 013972 289 SFREEIHKKIEKWQE 303 (433)
Q Consensus 289 ~lreeI~~ki~Kl~e 303 (433)
.||++|++||+.+..
T Consensus 398 ~Lr~qVEeRL~fy~t 412 (498)
T KOG2573|consen 398 KLREQVEERLEFYET 412 (498)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999999874
No 5
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-65 Score=513.72 Aligned_cols=254 Identities=27% Similarity=0.466 Sum_probs=245.9
Q ss_pred CCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCCCCCCcccccccCChHH
Q 013972 54 MVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAI 133 (433)
Q Consensus 54 ~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~~dl~~~~L~~iL~~~~ 133 (433)
..+..+.-+.+|||+++|++++|+|+|.+.|+|||||+||||||.++|.|++.|+++|+.+|++.+....+|.++||.+.
T Consensus 149 lkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eei 228 (498)
T KOG2572|consen 149 LKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEI 228 (498)
T ss_pred cccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHH
Confidence 34566667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCcchhcC
Q 013972 134 IMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAK 213 (433)
Q Consensus 134 imvis~~Asts~G~~Ls~~dl~~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL~~LAk 213 (433)
-..+..+|-+|||.++++.|+.+|.+.|+.++++.++|.++.+|+.+||..|||||++|||..|+||||+|||+|.+|||
T Consensus 229 E~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK 308 (498)
T KOG2572|consen 229 EAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAK 308 (498)
T ss_pred HHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhcccccccccCCCCCccceEeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCcchHHHHHH
Q 013972 214 MPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293 (433)
Q Consensus 214 mPAcnIq~LGaeK~~~~glst~~~~p~~G~Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~~G~~lree 293 (433)
+|+|+||+|||||++|++++|...||+||+|||+++|.++||+++||++|.||+|++||+|+|+++++.+|.+|...|..
T Consensus 309 ~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~k 388 (498)
T KOG2572|consen 309 APASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAK 388 (498)
T ss_pred CChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 013972 294 IHKKIEKWQEPPPA 307 (433)
Q Consensus 294 I~~ki~Kl~epP~~ 307 (433)
+++||..+.+.-..
T Consensus 389 lE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 389 LEKRLRSLEGRDLQ 402 (498)
T ss_pred HHHHHhhhhccCcc
Confidence 99999999876443
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=4.2e-55 Score=396.54 Aligned_cols=149 Identities=51% Similarity=0.813 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhhCCcchhcCCCchhhhhhhhhcccccccccC
Q 013972 156 KTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTA 235 (433)
Q Consensus 156 ~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~AGGL~~LAkmPAcnIq~LGaeK~~~~glst~ 235 (433)
+|.++|+++++|+++|+.|.+||++||..||||||+|||+.||||||++||||.+||+|||||||+||++|++|+||++.
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceEeeCccccCCCccchhhHHHHHhhhHHHHhhcccCCCCCCCc-chHHHHHHHHHHHHHhcCC
Q 013972 236 TSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGT-AGRSFREEIHKKIEKWQEP 304 (433)
Q Consensus 236 ~~~p~~G~Iy~s~lVq~~P~~~r~KaaR~lAaK~aLAARvD~~~~~~~g~-~G~~lreeI~~ki~Kl~ep 304 (433)
+.+||+|||||||+||++||++|+||+|+||+||+||||||+|+++++|+ +|.+||++|++||+||+|.
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999995 9999999999999999983
No 7
>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31. Prp31 is required for U4/U6*U5 tri-snRNP formation []. In humans this protein has been linked to autosomal dominant retinitis pigmentosa [, ].
Probab=100.00 E-value=5e-46 Score=326.93 Aligned_cols=116 Identities=56% Similarity=0.865 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCCCCCCccCCcchhhhhHHhhhhhHHHHHhhcccccccccccccCCcccccccccCCCCcceeeeccchh
Q 013972 306 PAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAVTDMRKLANRMLFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSK 385 (433)
Q Consensus 306 ~~k~~K~LP~P~d~~kkkRGGrR~Rk~Ke~~~~t~lrk~~NRm~FG~~ee~~~~~~~~~glGmlg~~~~Gr~r~~~~~~k 385 (433)
|++.+||||+|+|.|||||||||+|||||+|+||||||+||||+||++|||++++|+|+||||+|++++||||..+++++
T Consensus 1 P~k~~KaLP~Pdd~pkKKRGGrR~RK~KEr~~~TelRK~~NRm~FG~~eee~~~~~~g~glGmlg~~~~grir~~~~~~k 80 (124)
T PF09785_consen 1 PAKQKKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGEEEEEVYDFGEGIGLGMLGQSGSGRIRATQVDQK 80 (124)
T ss_pred CCCcCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccceeeeeeccCCCCceeeeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccccC----CCCCCCCcccccccccccccc
Q 013972 386 LAAKVAKRFKEKSYG----SSGATSGLTSSLAFTPVQVYI 421 (433)
Q Consensus 386 ~~~k~~k~~~~~~~~----~~~~~~g~asS~afTp~qGle 421 (433)
++++++|+++.+... +++.++||+|||+|||+||||
T Consensus 81 ~~ak~sK~~~~~l~~~~~~~~~~~sG~~sSlaftp~qgiE 120 (124)
T PF09785_consen 81 TKAKISKKMQKRLQSSGATTGGSTSGLASSLAFTPVQGIE 120 (124)
T ss_pred hhhhhhHHHHHHHHhhccccCCcccchhhhhhcCCCcccc
Confidence 999999998866432 335569999999999999998
No 8
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.87 E-value=8.3e-23 Score=155.37 Aligned_cols=53 Identities=57% Similarity=0.870 Sum_probs=51.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcC
Q 013972 64 LIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116 (433)
Q Consensus 64 lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign 116 (433)
+|++||+++++||+||+.+|+|+||||++|||||+++|+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999999999997
No 9
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.49 E-value=5.4 Score=40.99 Aligned_cols=73 Identities=19% Similarity=0.358 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCCCC---CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhh
Q 013972 132 AIIMVVSVTASTTSGKP---LPEDVLQKTIDACDRALA-LDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTA 205 (433)
Q Consensus 132 ~~imvis~~Asts~G~~---Ls~~dl~~i~~ac~~~~~-L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~A 205 (433)
..+|.+++.--+|-|++ .+++|+++++..-+..++ ..-....+.+|+..--..+|| +||+||-.+|...|-.-
T Consensus 227 ~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~i 303 (331)
T KOG2014|consen 227 YFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAI 303 (331)
T ss_pred eehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHh
Confidence 34566666666666654 559999988887666666 555666777899999999999 99999999999888644
No 10
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=61.51 E-value=15 Score=31.95 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc-------Cccc
Q 013972 32 FTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLK-------FPEL 97 (433)
Q Consensus 32 ~~~~l~~i~~~~~~~~~~~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~-------FPEL 97 (433)
.+-.+.+|++|-.+.. +..+++++.+|||+ .++++|++ +|.-+|+-- ||+.
T Consensus 38 QklFldKIREY~~Ksk--s~gGklVD~~Pe~~---------kel~eel~----kL~r~YG~g~~~Dm~kFP~F 95 (99)
T PF05511_consen 38 QKLFLDKIREYNQKSK--SSGGKLVDAGPEYE---------KELNEELE----KLARQYGGGSGVDMTKFPTF 95 (99)
T ss_dssp THHHHHHHHHHHHHHT--TTSS-STT--THHH---------HHHHHHHH----HHHHHHHSS---TTTS-SS-
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCCCCCHHHH---------HHHHHHHH----HHHHHhCCcccccHHhCCCC
Confidence 3446889999944422 12345899999987 45666666 688888865 7774
No 11
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=48.29 E-value=66 Score=28.00 Aligned_cols=61 Identities=18% Similarity=0.408 Sum_probs=41.1
Q ss_pred hhhhHhhhccch-HHHHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhh------c
Q 013972 20 LDNVSKLQKSQR-FTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYR------L 92 (433)
Q Consensus 20 v~~va~L~~s~~-~~~~l~~i~~~~~~~~~~~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys------~ 92 (433)
|.++|-...++- .+-.+.+|++|..+. ..+++++.+|||+ .++..|++ ++.-.|+ .
T Consensus 22 v~a~a~nk~~DpIqqlFldKvREy~~ks----~~Gklvds~pe~e---------~eLk~el~----rla~qfg~~~~Dm~ 84 (105)
T KOG4634|consen 22 VTATAFNKELDPIQQLFLDKVREYKKKS----PAGKLVDSDPEYE---------QELKEELF----RLAQQFGLANADML 84 (105)
T ss_pred hhhhHHHhhhChHHHHHHHHHHHHHhcC----CCCCCCCCCHHHH---------HHHHHHHH----HHHHHhCccCchhh
Confidence 556666665443 445678999997663 4567899999997 34556665 5777777 4
Q ss_pred cCccc
Q 013972 93 KFPEL 97 (433)
Q Consensus 93 ~FPEL 97 (433)
.||+.
T Consensus 85 ~fp~f 89 (105)
T KOG4634|consen 85 TFPPF 89 (105)
T ss_pred hCCCC
Confidence 56653
No 12
>PF13770 DUF4169: Domain of unknown function (DUF4169)
Probab=34.20 E-value=26 Score=27.30 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=19.6
Q ss_pred chhhhhHHhhhhhHHHHHhhccccccc
Q 013972 327 RRLRKMKERYAVTDMRKLANRMLFGVP 353 (433)
Q Consensus 327 rR~Rk~Ke~~~~t~lrk~~NRm~FG~~ 353 (433)
+++||.|++-. .+-+-.+||+.||-.
T Consensus 7 n~~RK~kaR~~-~~~~A~~NR~~fGRt 32 (55)
T PF13770_consen 7 NRARKAKARAE-KEAQADENRAKFGRT 32 (55)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 57888887754 355678999999963
No 13
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=32.53 E-value=25 Score=28.37 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.8
Q ss_pred HHHHHhhccCccccccc
Q 013972 85 FIRDKYRLKFPELESLV 101 (433)
Q Consensus 85 ~iRd~Ys~~FPELeslv 101 (433)
-|||.|+..||||-+-.
T Consensus 27 ~V~dfYs~~YPeLttA~ 43 (66)
T TIGR03738 27 QVRDFYSAQYPELLNAE 43 (66)
T ss_pred HHHHHHhccCchheeee
Confidence 59999999999997654
No 14
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=30.11 E-value=51 Score=34.09 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=89.7
Q ss_pred cchhhhHhh--h--ccchHHHHHHHHHH--HHhcCCCCCCCCCCCCCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 013972 18 DDLDNVSKL--Q--KSQRFTDIMQKVEA--ALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYR 91 (433)
Q Consensus 18 ~~v~~va~L--~--~s~~~~~~l~~i~~--~~~~~~~~~~~~~~~e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys 91 (433)
-..+.+++. + .+...+..|..+++ |+.++. ...|-+..+.-|++=|++--=...++++- -.+|+.+|.
T Consensus 26 v~s~~l~~~~~l~~S~aTIR~dm~~Le~~G~l~~~h---~sagrIPT~kGYR~YVd~L~~~~~~~~~~---~~~i~~~~~ 99 (339)
T PRK00082 26 VGSKTLSKRYGLGVSSATIRNDMADLEELGLLEKPH---TSSGRIPTDKGYRYFVDHLLEVKPLSEEE---RRAIEKFLD 99 (339)
T ss_pred cCHHHHHHHhCCCCChHHHHHHHHHHHhCCCcCCCc---CCCCCCcCHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHH
Confidence 345666654 2 35667888888875 444433 45677889999999987441111232322 247788888
Q ss_pred ccCccccccccChHHHHHHHHHhcCCCCC------Cccccccc----CChHHHHHHHHHhcc-------CCCCCCCHHHH
Q 013972 92 LKFPELESLVHHPIDYARVVKKIGNEMDL------TLVDLEGL----LPSAIIMVVSVTAST-------TSGKPLPEDVL 154 (433)
Q Consensus 92 ~~FPELeslv~~p~~Y~~~V~~ign~~dl------~~~~L~~i----L~~~~imvis~~Ast-------s~G~~Ls~~dl 154 (433)
.+|.+++.++.. -++++..+-+-.-+ ....+..+ |++..+++|.|+.+- .....+++++|
T Consensus 100 ~~~~~~~~~l~~---aa~~Ls~lT~~~avv~~p~~~~~~l~~i~lv~l~~~~~lvvlVt~~G~V~~~~i~~~~~~~~~~L 176 (339)
T PRK00082 100 ERGVSLEDVLQE---AAQLLSELTGYTAVVLTPKLSDSRLKHIELVPLSPHRALAVLVTDSGRVENRVIELPEGISPSDL 176 (339)
T ss_pred hccCCHHHHHHH---HHHHHHHHHCCcEEEEecCCCCceEEEEEEEEECCCcEEEEEEcCCCcEEEEEEeCCCCCCHHHH
Confidence 888899888754 45555555543211 11122222 345666666554431 45577889999
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Q 013972 155 QKTIDACDRA---LALDAAKKKVLDFV 178 (433)
Q Consensus 155 ~~i~~ac~~~---~~L~~~r~~i~~yv 178 (433)
..+..+-+.. ..|.+.+..+.+.+
T Consensus 177 ~~~~~~ln~~l~g~~l~ei~~~l~~~~ 203 (339)
T PRK00082 177 EEASNFLNERLVGLTLSEIRSKLRTEL 203 (339)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8887776654 24566666665544
No 15
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=26.72 E-value=21 Score=28.35 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccCCcchhhhhHHhhhh
Q 013972 310 PKPLPVPDSEPKKKRGGRRLRKMKERYAV 338 (433)
Q Consensus 310 ~K~LP~P~d~~kkkRGGrR~Rk~Ke~~~~ 338 (433)
.+..|.|+..+. =|++-|||+++|+|..
T Consensus 6 ~~~sp~p~~~~~-p~~e~kY~eI~eeFD~ 33 (64)
T PF12347_consen 6 GCDSPEPDIEPS-PRTENKYREINEEFDK 33 (64)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCcCCC-CchhhHHHHHHHHHHH
Confidence 366788887666 7889999999999964
No 16
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=24.85 E-value=32 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=14.7
Q ss_pred HHHHHhhccCccccccc
Q 013972 85 FIRDKYRLKFPELESLV 101 (433)
Q Consensus 85 ~iRd~Ys~~FPELeslv 101 (433)
-||+.|+..||||-+-.
T Consensus 28 ~V~~~ya~~YPeL~tA~ 44 (65)
T PF14454_consen 28 EVRDFYAAQYPELTTAE 44 (65)
T ss_pred HHHHHHhhhChhhheee
Confidence 58999999999997644
No 17
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=24.31 E-value=27 Score=32.09 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhccCccccccccChHHHHHHHHHhcCC
Q 013972 79 IVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNE 117 (433)
Q Consensus 79 I~~~h~~iRd~Ys~~FPELeslv~~p~~Y~~~V~~ign~ 117 (433)
+...|.++++||+.--|+|+. |+++.-|-+-+..|-|.
T Consensus 46 ~~~~~~rl~~ly~kil~~~eq-Ipkn~ayRk~Tesit~~ 83 (145)
T KOG3365|consen 46 CENPHERLRDLYTKILDVLEQ-IPKNAAYRKYTESITNQ 83 (145)
T ss_pred cCCHHHHHHHHHHHhHHHHHH-cchhhhhhHHHHHHHHH
Confidence 345799999999999999997 68889998888777653
No 18
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=24.12 E-value=71 Score=35.55 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=63.6
Q ss_pred CCCcchhHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCccccccccCh-HHH-------H--HHHHHhcCCCCCCccc--
Q 013972 57 EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHP-IDY-------A--RVVKKIGNEMDLTLVD-- 124 (433)
Q Consensus 57 e~~pey~lIv~~n~L~~~Id~EI~~~h~~iRd~Ys~~FPELeslv~~p-~~Y-------~--~~V~~ign~~dl~~~~-- 124 (433)
++..+|..|+.+..=. .+.-.+.-.+--.|-.+||+|.+-.-|. +|. + ..|+.|. .+.+.+
T Consensus 20 ~~~~~y~~il~~~kg~----~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp---~~ck~~~~ 92 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGS----PKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLP---QLCKDNPE 92 (556)
T ss_dssp GGHHHHHHHHHGGGS-----HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGG---GG--T--T
T ss_pred cCHHHHHHHHHHccCC----HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHH---HHHHhHHH
Confidence 4445899999988853 4455566677788999999998643321 111 1 1222222 121111
Q ss_pred --------ccccCChHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccCCCchhH
Q 013972 125 --------LEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRAL----ALDAAKKKVLDFVESRMSYIAPNLSA 191 (433)
Q Consensus 125 --------L~~iL~~~~imvis~~Asts~G~~Ls~~dl~~i~~ac~~~~----~L~~~r~~i~~yvesrM~~iAPNLsa 191 (433)
|-++|..+....+.+.- .+.-.-|.-+-...+..+|+.+. .=+..|++...||..+|..+.|++..
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~-~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVK-NSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 44444322211111100 00000111122233445566665 33457999999999999999888866
No 19
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=23.74 E-value=4.7e+02 Score=23.30 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=44.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHhhchHHHHHHHHhh
Q 013972 143 TTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTA 205 (433)
Q Consensus 143 ts~G~~Ls~~dl~~i~~ac~~~~~L~~~r~~i~~yvesrM~~iAPNLsaLvG~~vaAkLi~~A 205 (433)
.+.+.++++.+.......-..|++=+ ..|...++-||.. |+.++|..---|-+..|
T Consensus 50 ~~~~~~l~~~~q~~~~~lL~~IL~nd---a~Ir~Llq~rl~e----L~~li~~~~rq~~l~~a 105 (121)
T PRK10548 50 LTIPPDISTVMQEQLRPMLRQILDNE---AELKQLLQQRMDE----LSSLIGQSTRQKSVNSA 105 (121)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHhHHHHHHHHH
Confidence 45677899998888888888887644 4677788999999 99999998888777665
No 20
>KOG0407 consensus 40S ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=36 Score=30.27 Aligned_cols=18 Identities=39% Similarity=0.962 Sum_probs=12.3
Q ss_pred CCCCCCCCCccCCcchhhh
Q 013972 313 LPVPDSEPKKKRGGRRLRK 331 (433)
Q Consensus 313 LP~P~d~~kkkRGGrR~Rk 331 (433)
-|+|.|. -+|+||||=|+
T Consensus 121 tpip~d~-trrkggrrgrr 138 (139)
T KOG0407|consen 121 TPIPSDS-TRRKGGRRGRR 138 (139)
T ss_pred ccCCccc-hhhccCccccc
Confidence 4778774 45678888765
No 21
>PRK15058 cytochrome b562; Provisional
Probab=21.28 E-value=3.2e+02 Score=24.85 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=44.8
Q ss_pred hhhhHhhhccchHHHHHHHHHHHHhc--CCCCCCCCCCCCCCcchhHH-HHhhhhHHHHHHHHHHHH-------------
Q 013972 20 LDNVSKLQKSQRFTDIMQKVEAALQN--GSDISNHGMVLEDDPEYQLI-VDCNVLSVDIENEIVIIH------------- 83 (433)
Q Consensus 20 v~~va~L~~s~~~~~~l~~i~~~~~~--~~~~~~~~~~~e~~pey~lI-v~~n~L~~~Id~EI~~~h------------- 83 (433)
...+++=-+.+.++.-+...+....+ ...+....+..+|+||.+-- ---+.|+++||.-...+.
T Consensus 36 ~k~~~~A~~a~~~k~al~~mr~aa~~Ak~~~P~kl~~k~~ds~e~K~Y~~G~d~Li~qID~a~~la~~GkL~eAK~~a~~ 115 (128)
T PRK15058 36 LKVVEKTDNAAEVKDALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGKVKEAQAAAEQ 115 (128)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhccCCchhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44555555556677777777765543 12333444556788886332 234667777776554433
Q ss_pred -HHHHHHhhccC
Q 013972 84 -NFIRDKYRLKF 94 (433)
Q Consensus 84 -~~iRd~Ys~~F 94 (433)
.-+|+-|+.+|
T Consensus 116 l~~lR~eYHkky 127 (128)
T PRK15058 116 LKTTRNAYHKKY 127 (128)
T ss_pred HHHHHHHHHHhc
Confidence 25788888877
No 22
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=20.19 E-value=3.4e+02 Score=21.47 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=19.7
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 013972 63 QLIVDCNVLSVDIENEIVIIHNFIRDK 89 (433)
Q Consensus 63 ~lIv~~n~L~~~Id~EI~~~h~~iRd~ 89 (433)
++|.++-.| ||--|..+|+|+|-.
T Consensus 19 K~IaeskrL---IDLsIqnY~~Fl~yi 42 (58)
T PF12491_consen 19 KFIAESKRL---IDLSIQNYHMFLRYI 42 (58)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 788888777 778899999999854
Done!