Query 013974
Match_columns 433
No_of_seqs 129 out of 1337
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 00:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.4E-56 2.9E-61 421.7 32.4 381 43-429 44-449 (449)
2 PTZ00206 amino acid transporte 100.0 7.6E-56 1.7E-60 437.3 33.2 385 45-430 59-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.3E-52 5E-57 400.5 31.0 388 42-432 34-437 (437)
4 PLN03074 auxin influx permease 100.0 3.1E-47 6.8E-52 374.0 31.5 380 42-433 42-455 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.6E-51 3.4E-56 405.2 -1.1 379 44-426 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 2.1E-45 4.5E-50 325.8 10.3 383 41-433 112-518 (524)
7 KOG1305 Amino acid transporter 100.0 2.3E-43 5E-48 337.0 23.9 386 43-432 3-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 1.8E-32 4E-37 265.8 32.8 379 43-425 6-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 1.7E-26 3.7E-31 222.7 32.6 345 45-399 2-367 (394)
10 PRK10483 tryptophan permease; 100.0 2.9E-26 6.3E-31 218.8 31.5 346 43-397 8-373 (414)
11 PRK09664 tryptophan permease T 100.0 9.2E-26 2E-30 215.0 31.3 367 46-420 9-402 (415)
12 PRK15132 tyrosine transporter 100.0 8.9E-26 1.9E-30 216.6 31.2 364 47-422 4-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 1.6E-25 3.5E-30 217.8 26.7 338 52-398 3-360 (381)
14 PRK13629 threonine/serine tran 99.9 1.7E-21 3.7E-26 185.9 32.4 365 51-423 24-440 (443)
15 TIGR00814 stp serine transport 99.9 2.1E-20 4.6E-25 180.1 28.1 360 49-415 6-396 (397)
16 COG1113 AnsP Gamma-aminobutyra 99.8 4.1E-17 8.9E-22 153.6 26.4 347 38-396 7-388 (462)
17 PRK10655 potE putrescine trans 99.8 4.1E-16 9E-21 154.6 33.9 234 43-284 5-245 (438)
18 PRK10249 phenylalanine transpo 99.8 1.4E-15 3.1E-20 151.2 34.8 231 41-282 18-263 (458)
19 TIGR01773 GABAperm gamma-amino 99.8 3E-15 6.6E-20 149.0 34.4 234 39-283 7-256 (452)
20 PRK15049 L-asparagine permease 99.8 3.2E-15 7E-20 149.9 34.7 235 41-284 25-276 (499)
21 PRK11387 S-methylmethionine tr 99.8 3.1E-15 6.8E-20 149.5 34.5 233 41-284 11-262 (471)
22 PRK10644 arginine:agmatin anti 99.8 3.7E-15 8.1E-20 148.0 33.8 236 42-284 6-247 (445)
23 PRK11021 putative transporter; 99.8 6.7E-15 1.4E-19 144.7 35.0 228 46-282 1-231 (410)
24 PRK10746 putative transport pr 99.8 7.5E-15 1.6E-19 146.0 34.8 344 42-397 8-388 (461)
25 PRK10435 cadB lysine/cadaverin 99.8 5.2E-15 1.1E-19 146.4 33.3 236 42-286 3-245 (435)
26 KOG1287 Amino acid transporter 99.7 1.7E-16 3.6E-21 152.0 21.5 358 38-404 6-393 (479)
27 TIGR03810 arg_ornith_anti argi 99.7 8.5E-15 1.8E-19 146.3 34.3 238 44-287 1-253 (468)
28 PRK11049 D-alanine/D-serine/gl 99.7 1.2E-14 2.6E-19 145.2 34.6 233 41-284 17-267 (469)
29 TIGR00909 2A0306 amino acid tr 99.7 2.2E-15 4.7E-20 149.3 28.4 241 43-284 2-251 (429)
30 TIGR00905 2A0302 transporter, 99.7 1.2E-14 2.5E-19 145.5 32.9 237 43-285 6-255 (473)
31 PRK10836 lysine transporter; P 99.7 4E-14 8.7E-19 142.2 36.2 234 41-285 12-262 (489)
32 PRK10580 proY putative proline 99.7 5.1E-14 1.1E-18 140.3 36.4 232 40-282 5-253 (457)
33 TIGR00906 2A0303 cationic amin 99.7 6.9E-15 1.5E-19 149.0 29.8 244 41-284 25-287 (557)
34 TIGR00930 2a30 K-Cl cotranspor 99.7 1.4E-14 3E-19 153.5 32.7 240 42-282 74-334 (953)
35 PRK10238 aromatic amino acid t 99.7 3.5E-14 7.6E-19 141.2 33.8 228 41-279 9-251 (456)
36 TIGR00911 2A0308 L-type amino 99.7 1.3E-14 2.7E-19 146.4 30.9 242 38-285 36-292 (501)
37 TIGR00912 2A0309 spore germina 99.7 1.5E-14 3.2E-19 139.8 28.0 331 45-395 2-352 (359)
38 TIGR00908 2A0305 ethanolamine 99.7 3.7E-14 8.1E-19 140.9 31.1 230 42-282 5-245 (442)
39 TIGR00913 2A0310 amino acid pe 99.7 2.5E-13 5.3E-18 136.4 35.4 229 43-282 1-251 (478)
40 PF13520 AA_permease_2: Amino 99.7 2.3E-13 4.9E-18 134.8 33.0 237 46-289 1-247 (426)
41 PRK11357 frlA putative fructos 99.7 1.3E-13 2.7E-18 137.2 29.3 234 41-283 5-250 (445)
42 PRK10197 gamma-aminobutyrate t 99.6 5.5E-13 1.2E-17 132.3 32.5 329 55-396 3-367 (446)
43 COG0833 LysP Amino acid transp 99.6 4.5E-12 9.7E-17 122.4 30.3 345 41-396 41-427 (541)
44 KOG1286 Amino acid transporter 99.5 7E-13 1.5E-17 132.0 18.4 297 40-336 26-351 (554)
45 TIGR03428 ureacarb_perm permea 99.5 1.5E-10 3.3E-15 116.0 34.6 245 40-284 9-269 (475)
46 COG0531 PotE Amino acid transp 99.5 6.8E-11 1.5E-15 118.5 31.9 246 40-289 8-262 (466)
47 TIGR00907 2A0304 amino acid pe 99.5 3E-10 6.6E-15 114.2 33.4 237 41-279 9-268 (482)
48 PRK15238 inner membrane transp 99.4 2.5E-09 5.4E-14 107.8 36.0 239 43-283 6-266 (496)
49 TIGR03813 put_Glu_GABA_T putat 99.4 1.7E-09 3.7E-14 108.4 34.5 235 45-285 2-251 (474)
50 PF03845 Spore_permease: Spore 99.4 1.8E-10 4E-15 109.3 25.0 286 45-342 1-298 (320)
51 TIGR00910 2A0307_GadC glutamat 99.3 1E-08 2.2E-13 103.3 32.6 231 43-281 3-247 (507)
52 PF00324 AA_permease: Amino ac 99.2 1.6E-10 3.4E-15 116.1 12.5 231 54-289 5-261 (478)
53 KOG1289 Amino acid transporter 99.1 1.5E-07 3.2E-12 91.4 26.8 250 34-288 38-312 (550)
54 KOG3832 Predicted amino acid t 99.0 2E-08 4.3E-13 84.4 13.8 212 47-259 13-303 (319)
55 COG3949 Uncharacterized membra 98.8 5.3E-06 1.1E-10 75.7 25.4 212 49-275 6-225 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 9.6E-05 2.1E-09 73.5 28.7 232 107-339 76-330 (442)
57 COG1457 CodB Purine-cytosine p 98.6 0.00022 4.8E-09 69.1 29.1 252 111-382 85-346 (442)
58 PRK09442 panF sodium/panthothe 98.5 0.0018 3.8E-08 65.3 35.7 146 40-197 37-188 (483)
59 PRK12488 acetate permease; Pro 98.5 0.0018 3.8E-08 66.2 34.6 148 40-199 63-212 (549)
60 PF00474 SSF: Sodium:solute sy 98.4 0.00037 8.1E-09 68.6 28.4 110 43-153 5-117 (406)
61 TIGR00813 sss transporter, SSS 98.4 0.00089 1.9E-08 65.9 30.9 145 43-199 2-148 (407)
62 TIGR02358 thia_cytX probable h 98.4 0.00099 2.2E-08 64.9 30.4 257 107-382 58-318 (386)
63 TIGR02119 panF sodium/pantothe 98.4 0.0031 6.7E-08 63.3 34.8 148 40-199 36-189 (471)
64 PRK11375 allantoin permease; P 98.3 0.0019 4E-08 64.8 29.9 231 107-339 89-344 (484)
65 COG0591 PutP Na+/proline sympo 98.3 0.004 8.6E-08 62.7 31.6 113 40-153 34-152 (493)
66 PRK09395 actP acetate permease 98.2 0.0097 2.1E-07 60.9 34.1 148 38-197 63-212 (551)
67 TIGR00796 livcs branched-chain 98.2 0.0074 1.6E-07 58.1 32.3 312 54-394 3-347 (378)
68 TIGR02711 symport_actP cation/ 98.1 0.015 3.2E-07 59.5 34.4 147 40-198 63-211 (549)
69 PRK11017 codB cytosine permeas 98.1 0.011 2.3E-07 58.1 29.5 168 107-289 71-244 (404)
70 PRK00701 manganese transport p 98.0 0.024 5.3E-07 56.0 30.1 47 106-152 93-139 (439)
71 COG0733 Na+-dependent transpor 97.9 0.027 6E-07 54.4 27.2 225 46-275 9-261 (439)
72 PF02554 CstA: Carbon starvati 97.9 0.0049 1.1E-07 57.9 21.1 105 46-150 52-157 (376)
73 TIGR02121 Na_Pro_sym sodium/pr 97.8 0.062 1.3E-06 54.2 35.4 114 40-153 32-153 (487)
74 TIGR03648 Na_symport_lg probab 97.7 0.074 1.6E-06 54.5 34.3 115 38-153 26-142 (552)
75 COG1914 MntH Mn2+ and Fe2+ tra 97.7 0.057 1.2E-06 52.5 31.3 105 46-153 17-123 (416)
76 PF02133 Transp_cyt_pur: Perme 97.7 0.004 8.7E-08 62.0 19.2 289 46-337 9-316 (440)
77 TIGR00835 agcS amino acid carr 97.6 0.095 2.1E-06 51.2 28.9 147 44-203 45-201 (425)
78 PF01235 Na_Ala_symp: Sodium:a 97.5 0.068 1.5E-06 51.9 24.0 147 39-198 12-169 (416)
79 KOG2082 K+/Cl- cotransporter K 97.5 0.023 5E-07 57.6 20.4 108 46-154 115-227 (1075)
80 PRK15419 proline:sodium sympor 97.4 0.18 3.9E-06 51.1 35.1 148 40-198 36-191 (502)
81 PRK10484 putative transporter; 97.4 0.21 4.6E-06 50.8 34.8 93 38-131 32-125 (523)
82 COG1966 CstA Carbon starvation 97.3 0.026 5.6E-07 55.6 17.5 105 46-150 52-157 (575)
83 KOG1288 Amino acid transporter 97.1 0.019 4E-07 57.8 14.9 55 229-283 294-349 (945)
84 PF00209 SNF: Sodium:neurotran 97.0 0.52 1.1E-05 48.0 27.1 162 178-339 190-381 (523)
85 COG1953 FUI1 Cytosine/uracil/t 96.9 0.48 1E-05 46.7 28.0 96 244-339 256-358 (497)
86 COG1115 AlsT Na+/alanine sympo 96.9 0.46 1E-05 46.1 27.5 322 41-382 58-424 (452)
87 PRK15015 carbon starvation pro 96.7 0.12 2.7E-06 52.2 17.2 105 46-150 83-188 (701)
88 KOG2083 Na+/K+ symporter [Inor 96.3 0.014 3E-07 57.9 7.9 216 51-279 40-274 (643)
89 PF01566 Nramp: Natural resist 95.7 2.2 4.8E-05 41.1 28.9 80 106-196 41-122 (358)
90 PHA02764 hypothetical protein; 94.5 4.1 8.9E-05 37.8 18.7 90 42-132 10-102 (399)
91 COG4147 DhlC Predicted symport 94.5 5.4 0.00012 39.2 27.4 179 96-286 94-294 (529)
92 TIGR00796 livcs branched-chain 94.4 0.79 1.7E-05 44.3 12.5 51 104-154 252-302 (378)
93 PF05525 Branch_AA_trans: Bran 93.1 0.84 1.8E-05 44.7 10.2 80 105-195 259-338 (427)
94 KOG2349 Na+:iodide/myo-inosito 92.3 1.3 2.9E-05 44.8 10.5 98 42-141 43-142 (585)
95 PF05525 Branch_AA_trans: Bran 91.3 16 0.00034 36.0 24.3 316 47-394 4-353 (427)
96 COG1114 BrnQ Branched-chain am 91.0 5.8 0.00013 38.3 12.9 50 105-154 261-310 (431)
97 PRK15433 branched-chain amino 88.6 4.4 9.4E-05 39.9 10.3 75 109-195 267-341 (439)
98 KOG3659 Sodium-neurotransmitte 86.0 43 0.00093 34.2 17.9 82 46-129 82-169 (629)
99 TIGR01197 nramp NRAMP (natural 83.9 45 0.00097 32.6 29.2 97 52-153 10-110 (390)
100 cd08762 Cyt_b561_CYBASC3 Verte 81.9 31 0.00068 29.4 11.0 108 214-327 23-133 (179)
101 PF02028 BCCT: BCCT family tra 80.6 67 0.0015 32.4 28.4 25 43-67 72-96 (485)
102 KOG3660 Sodium-neurotransmitte 80.0 81 0.0018 32.9 21.1 49 46-94 38-88 (629)
103 PRK15433 branched-chain amino 78.9 71 0.0015 31.6 27.1 312 47-394 9-356 (439)
104 PLN02680 carbon-monoxide oxyge 78.9 44 0.00095 29.9 11.4 97 225-327 46-142 (232)
105 KOG1289 Amino acid transporter 75.2 61 0.0013 32.8 12.4 47 106-152 324-370 (550)
106 COG4145 PanF Na+/panthothenate 74.6 84 0.0018 30.3 26.6 110 43-153 38-153 (473)
107 COG0814 SdaC Amino acid permea 60.9 1.8E+02 0.0038 28.8 19.1 151 256-407 217-388 (415)
108 PF11239 DUF3040: Protein of u 60.7 23 0.0005 25.8 4.9 27 8-34 3-29 (82)
109 COG4709 Predicted membrane pro 60.3 1.1E+02 0.0024 26.2 9.7 51 46-100 76-128 (195)
110 PRK09928 choline transport pro 59.1 2.4E+02 0.0052 29.8 20.2 22 45-66 92-113 (679)
111 cd08765 Cyt_b561_CYBRD1 Verteb 55.9 56 0.0012 27.1 6.8 68 259-328 44-111 (153)
112 cd08766 Cyt_b561_ACYB-1_like P 45.7 1.5E+02 0.0032 24.3 7.8 98 225-328 7-104 (144)
113 PRK10263 DNA translocase FtsK; 40.3 6.3E+02 0.014 29.1 13.6 23 264-286 24-46 (1355)
114 PRK09950 putative transporter; 39.6 4.3E+02 0.0092 26.9 25.4 105 44-148 82-212 (506)
115 TIGR00909 2A0306 amino acid tr 38.2 3.9E+02 0.0085 26.1 13.8 46 107-152 264-309 (429)
116 PF10716 NdhL: NADH dehydrogen 37.9 1.6E+02 0.0034 21.4 6.6 50 367-416 13-64 (81)
117 PRK10921 twin-arginine protein 34.8 3.6E+02 0.0077 24.6 13.9 37 303-339 66-102 (258)
118 TIGR00945 tatC Twin arginine t 34.1 3.3E+02 0.0071 24.0 13.3 40 301-340 53-92 (215)
119 PF07695 7TMR-DISM_7TM: 7TM di 34.0 2.9E+02 0.0063 23.4 10.7 19 334-353 86-104 (205)
120 PF04835 Pox_A9: A9 protein co 33.4 1E+02 0.0023 20.3 3.9 29 263-291 23-51 (54)
121 COG0534 NorM Na+-driven multid 32.8 5.1E+02 0.011 25.8 12.4 30 256-285 311-340 (455)
122 CHL00182 tatC Sec-independent 32.6 3.8E+02 0.0083 24.3 13.8 38 302-339 75-112 (249)
123 TIGR03750 conj_TIGR03750 conju 31.2 2.6E+02 0.0055 21.9 7.3 69 38-106 10-80 (111)
124 PF07954 DUF1689: Protein of u 30.6 1.7E+02 0.0037 24.2 5.9 57 375-431 35-93 (152)
125 PF14373 Imm_superinfect: Supe 29.6 1.1E+02 0.0023 19.3 3.5 38 384-423 2-39 (43)
126 PRK13183 psbN photosystem II r 29.5 55 0.0012 20.8 2.1 28 263-290 6-33 (46)
127 PLN02810 carbon-monoxide oxyge 29.3 4.2E+02 0.009 23.7 12.9 107 215-327 34-142 (231)
128 PF03169 OPT: OPT oligopeptide 28.9 4E+02 0.0086 27.9 9.8 57 61-119 368-427 (624)
129 cd08764 Cyt_b561_CG1275_like N 28.6 4.1E+02 0.009 23.5 8.8 109 215-327 13-122 (214)
130 TIGR00907 2A0304 amino acid pe 27.9 6.2E+02 0.013 25.3 15.8 45 107-151 289-334 (482)
131 PF00902 TatC: Sec-independent 27.3 4.3E+02 0.0093 23.2 12.8 94 302-395 58-174 (215)
132 PF02468 PsbN: Photosystem II 27.2 59 0.0013 20.4 2.0 26 264-289 4-29 (43)
133 KOG2466 Uridine permease/thiam 26.9 6.7E+02 0.015 25.4 18.9 76 42-122 52-133 (572)
134 CHL00020 psbN photosystem II p 26.5 53 0.0011 20.6 1.7 27 264-290 4-30 (43)
135 PF12666 PrgI: PrgI family pro 24.6 2E+02 0.0044 21.2 5.0 30 39-68 10-39 (93)
136 KOG2466 Uridine permease/thiam 24.4 4.3E+02 0.0093 26.7 8.2 156 119-281 341-514 (572)
137 TIGR00905 2A0302 transporter, 24.3 7.2E+02 0.016 24.8 11.5 43 109-151 270-312 (473)
138 KOG0569 Permease of the major 24.0 5.4E+02 0.012 26.0 9.2 46 237-282 378-423 (485)
139 PF06166 DUF979: Protein of un 23.8 5.3E+02 0.011 24.1 8.2 31 402-432 162-192 (308)
140 PF13491 DUF4117: Domain of un 23.7 4.3E+02 0.0093 21.9 8.7 27 259-285 1-27 (171)
141 COG3817 Predicted membrane pro 23.4 3E+02 0.0066 24.9 6.4 32 402-433 166-197 (313)
142 PF11345 DUF3147: Protein of u 22.9 3.6E+02 0.0079 20.8 7.0 15 383-397 36-50 (108)
143 COG5264 VTC1 Vacuolar transpor 22.9 3.9E+02 0.0084 21.2 7.6 61 46-111 36-99 (126)
144 PF05805 L6_membrane: L6 membr 21.4 2.7E+02 0.0059 24.2 5.6 57 375-431 50-117 (195)
145 COG5336 Uncharacterized protei 20.5 2.1E+02 0.0045 22.1 4.2 36 54-89 52-87 (116)
146 KOG2174 Leptin receptor gene-r 20.3 2.4E+02 0.0051 22.5 4.5 39 47-86 65-105 (131)
147 KOG1287 Amino acid transporter 20.1 8.9E+02 0.019 24.4 9.6 41 110-151 276-316 (479)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-56 Score=421.67 Aligned_cols=381 Identities=23% Similarity=0.371 Sum_probs=336.3
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCCHHHHHHHh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA 116 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~-----~~~~~~~y~~l~~~~ 116 (433)
++.+|..++..|+.++++|+|+|++|+||+++|++ |.+..++++.++.||++.+++|.+ +.....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 44589999999999999999999999999999999 999999999999999999999863 122346777776655
Q ss_pred ----------hchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc
Q 013974 117 ----------FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (433)
Q Consensus 117 ----------~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~ 186 (433)
+||++|.+++..+++.++|.|++|++++++.++++.+... ....+...++.+.....++++++||
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-----~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-----PGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-----CCCccHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999988421 1123456677778888999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHhhhhccccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhH---H
Q 013974 187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K 263 (433)
Q Consensus 187 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~ 263 (433)
+|.++.+|.++.+..+....++.++...+.++.+..+...++.+++..+|+.+|||+|+.++.|++|+||+|++++ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999988877666666666555555555555566789999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC--CC
Q 013974 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS 341 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~--~~ 341 (433)
++..++.++.++|..+|++||++||+++++.+++|+|+ ++.....+.+++++++.+||++++|..+.+|+.+.++ +.
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~ 357 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN 357 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence 99999999999999999999999999999999999999 7888888999999999999999999999999976555 33
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccc---cchhhHhhhhhHhHHHHHH
Q 013974 342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRK---ATRTQIVSSTAIAVLGVIC 417 (433)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~~g~~~ 417 (433)
+.++..+.+|..++.++..+|..+|+++.+++++|+++++. ++++|++++++.++++ +.+|+.+.+..++++|++.
T Consensus 358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~ 437 (449)
T KOG1304|consen 358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG 437 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 9999999999997644 4578889999999999999
Q ss_pred HHHhHHHHHHHH
Q 013974 418 AILGTFSSVAKI 429 (433)
Q Consensus 418 ~v~gt~~~i~~~ 429 (433)
++.|||+++.++
T Consensus 438 ~v~Gty~si~~i 449 (449)
T KOG1304|consen 438 FVYGTYTSIKEI 449 (449)
T ss_pred HHHHHhhhhhcC
Confidence 999999998764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.6e-56 Score=437.27 Aligned_cols=385 Identities=19% Similarity=0.347 Sum_probs=318.9
Q ss_pred CCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhH
Q 013974 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (433)
..+..++++|++|+++|+|+|++|++++++||+ |++++++++.++.|+.+++.++++ .++.++|+|++++++||++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHHH
Confidence 368899999999999999999999999999999 999999999999999999999976 577789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCC-CCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHH
Q 013974 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASL-DWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (433)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 202 (433)
++++.+.+.++|+|++|+++.+|.++++++.... ++.+.....+..+.++..++++|++++|++++++++|.+++.+++
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~ 217 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865321 111111112333445566789999999999999999999987766
Q ss_pred HHHHHhhhhcccccccc--CC---------CCcccc-ccChhhhhhhHhhhcccccchhhHHhhccch--hhhHHHHHHH
Q 013974 203 LIVLCVLFLGTIEGIGF--HP---------TGQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADK--TKFTKALITC 268 (433)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~~---------~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~~~ 268 (433)
+..+.+++....++.+. +. +...++ ..+.+.++|+++|||.||.+++++++|||+| +|+.+++..+
T Consensus 218 ~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s 297 (467)
T PTZ00206 218 YLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIA 297 (467)
T ss_pred HHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHH
Confidence 66655554443322111 10 000111 2356789999999999999999999999875 5888999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcccchhhhhhcC-CCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC-CCchhhH
Q 013974 269 FALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG-ISNNYWC 346 (433)
Q Consensus 269 ~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~-~~~~~~~ 346 (433)
+.+++++|..+|++||+.||+++++++++|+ |.++....++++...+.++.+||++.+|+|+.+++.+..+ ++.+.++
T Consensus 298 ~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~ 377 (467)
T PTZ00206 298 MGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWK 377 (467)
T ss_pred HHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhh
Confidence 9999999999999999999999999999999 5667777788888889999999999999999999987443 2334456
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHH---hccccchhhHhhhhhHhHHHHHHHHHhH
Q 013974 347 FILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKI---LGRKATRTQIVSSTAIAVLGVICAILGT 422 (433)
Q Consensus 347 ~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~v~gt 422 (433)
+...+..+.+.++++|+++|+++.+++++|+++++. +|++|+++|++. .+++..+++++.++.++++|++..+.||
T Consensus 378 ~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt 457 (467)
T PTZ00206 378 HCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGT 457 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecc
Confidence 666666677778899999999999999999999999 999999999984 2233344556789999999999999999
Q ss_pred HHHHHHHH
Q 013974 423 FSSVAKIA 430 (433)
Q Consensus 423 ~~~i~~~i 430 (433)
|+++.+.+
T Consensus 458 ~~si~~~~ 465 (467)
T PTZ00206 458 GATIWGVT 465 (467)
T ss_pred hhHhhHHh
Confidence 99999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-52 Score=400.50 Aligned_cols=388 Identities=35% Similarity=0.623 Sum_probs=343.9
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-----HHHHHHH
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT-----YPDIGEA 115 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~-----y~~l~~~ 115 (433)
.+++.|++++.++.+|.++|.|+|+||+++++.||. |+++++..++++.||..+|.+|.+.++...+ |.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 456699999999999999999999999999999999 8999999999999999999999887766555 9999999
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHH
Q 013974 116 AFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (433)
Q Consensus 116 ~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~ 195 (433)
+||+++++++.+.+.+.++++++.|++..+|.++.+++....+.. ..+ ...+++++.++.+|++++||++.++++|.
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 999999999999999999999999999999999999887654321 333 56788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccccccCCC-Cccccc--cCh-hhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHH
Q 013974 196 TGVVATILIVLCVLFLGTIEGIGFHPT-GQVVKW--SGM-PFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFAL 271 (433)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 271 (433)
.+.+..+....+.++.+..++.+.+.+ ....++ .+. +.++|++.|+|+||..+|+++.+||+|++++|++.+++.+
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~ 270 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYII 270 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHH
Confidence 998888777777777777666544221 222222 222 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCC----chhhHH
Q 013974 272 CVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS----NNYWCF 347 (433)
Q Consensus 272 ~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~----~~~~~~ 347 (433)
++.+|..+++.||++|||+.+++++.|+++..+....+++++.++++.++.....|..+.+|+....+.+ +....|
T Consensus 271 ~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R 350 (437)
T KOG1303|consen 271 VTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLR 350 (437)
T ss_pred HHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccccee
Confidence 9999999999999999999999999999644577888999999999999999999999999998865533 355689
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhHhhhhhH-hHHHHHHHHHhHHHH
Q 013974 348 ILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQIVSSTAI-AVLGVICAILGTFSS 425 (433)
Q Consensus 348 ~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~gt~~~ 425 (433)
.+.|..+++.+.++|..+|+|+.+++++|++...+ .+++|+++|++.+|.++...+++.++.+ .++|+++.+.+..++
T Consensus 351 ~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~ 430 (437)
T KOG1303|consen 351 LLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGG 430 (437)
T ss_pred eehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999998888777888888888 799999999999999
Q ss_pred HHHHHhh
Q 013974 426 VAKIAEN 432 (433)
Q Consensus 426 i~~~i~~ 432 (433)
+++++.+
T Consensus 431 ~~~li~~ 437 (437)
T KOG1303|consen 431 VRSLIID 437 (437)
T ss_pred HHHHhhC
Confidence 9998864
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.1e-47 Score=373.99 Aligned_cols=380 Identities=18% Similarity=0.224 Sum_probs=308.4
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh----hCCC-C-------CC
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE----SKEG-I-------TT 108 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~----~~~~-~-------~~ 108 (433)
.+++.|..++.+++.++.+|.|+|+||++++++||+ |++.+++.+.++.||++++.++.. |+++ . .+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 456699999999999999999999999999999999 999999999999999999987632 2222 1 25
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc
Q 013974 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (433)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~ 188 (433)
|.|+++..+||+|+.+.....++++++.++.|.+..++.+..+-+. . +...+.++..++..|+.++|+++
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~---------~-~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---------L-DKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC---------c-CCCeEEeehHHHHHHHHHccCHH
Confidence 7889999999999999999999999999999999988887765322 1 12344456777778889999999
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccc--cccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHH
Q 013974 189 VISYLSATGVVATILIVLCVLFLGTIEG--IGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALI 266 (433)
Q Consensus 189 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 266 (433)
+++++|.+++.+++.....++......+ ++.+.. ...++..++.++++++|||+||..+|++++|||+|+|++++..
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~ 270 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL 270 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHH
Confidence 9999999998765543333222222111 111111 1224455666778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccchh--hhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchh
Q 013974 267 TCFALCVLIYGGVAVMGFLMFGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (433)
Q Consensus 267 ~~~~~~~~~y~~~g~~gy~~fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~ 344 (433)
.+...++.+|..+++.||+.|||++.+ +.+.|+|++.+ ..+++.+++++.+.+|++++.|+.+..|+..+.++.+..
T Consensus 271 l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~ 349 (473)
T PLN03074 271 AATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSI 349 (473)
T ss_pred HHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccH
Confidence 999999999999999999999998764 44666886654 578889999999999999999999999998766545566
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccc-------------cchh--hHhhhh
Q 013974 345 WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRK-------------ATRT--QIVSST 408 (433)
Q Consensus 345 ~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~-------------~~~~--~~~~~~ 408 (433)
..|...|+.+++.++++|..+|+++.+++++|+++++. ++++|+++|++.++++ .++| ..+.|+
T Consensus 350 ~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 429 (473)
T PLN03074 350 CLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNA 429 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhh
Confidence 78999999999999999999999999999999999999 9999999999876432 2223 357888
Q ss_pred hHhHH-HHHHHHHhHHHHHHHHHhhC
Q 013974 409 AIAVL-GVICAILGTFSSVAKIAENY 433 (433)
Q Consensus 409 ~~~~~-g~~~~v~gt~~~i~~~i~~~ 433 (433)
.++++ |++..+.|+|.++.+++++|
T Consensus 430 ~iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 430 FVVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHHhhhhHhhccchHHHHHHHHHhh
Confidence 98875 55557999999999999875
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-51 Score=405.18 Aligned_cols=379 Identities=31% Similarity=0.556 Sum_probs=327.1
Q ss_pred CCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCCHHHHHHHhhch
Q 013974 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES---KEGITTYPDIGEAAFGK 119 (433)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~---~~~~~~y~~l~~~~~G~ 119 (433)
++.|++++.++++|+++|+|+|++|++++++|++ |++++++++.++.++.+.+.+++++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4689999999999999999999999999999999 9999999999999999999999864 35889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
++++++++++.+.+++.+++|++..+|.+.++++....+ ...++..+.++..++++|++++|+++.+++.+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998874322 2234556667788899999999999999999999987
Q ss_pred HHHHHHHHhhhhcc--c--cccccCCC--CccccccChhhhhhhHhhhcccccchhhHHhhccchhhhH---HHHHHHHH
Q 013974 200 ATILIVLCVLFLGT--I--EGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---KALITCFA 270 (433)
Q Consensus 200 ~~~~~~~~~~~~~~--~--~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~~~~ 270 (433)
+++........... . ++.+.+.. ....++.+++.++++++|||.||++++++++|||+|+|++ ++...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 76653111121111 1 11111111 1234567899999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCC----------CC
Q 013974 271 LCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA----------GI 340 (433)
Q Consensus 271 ~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~----------~~ 340 (433)
+++++|..+|+.||++||+++++|++.|+|++++...++++++.++++.++|++.+|.++.+++.+.+ ++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999998878889999999999999999999999999998864 23
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhH-----hhhhhHhHHH
Q 013974 341 SNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQI-----VSSTAIAVLG 414 (433)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g 414 (433)
..++++|...|++++++++++|+.+|+++.+++++|++++.. +|++|+++|+|.+++++.++++ ..++..+.+|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 445678899999999999999999999999999999999999 9999999999998776544333 3478899999
Q ss_pred HHHHHHhHHHHH
Q 013974 415 VICAILGTFSSV 426 (433)
Q Consensus 415 ~~~~v~gt~~~i 426 (433)
++.++.|+|+.+
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999876
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-45 Score=325.83 Aligned_cols=383 Identities=23% Similarity=0.380 Sum_probs=338.7
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC--------CCCHHHH
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEG--------ITTYPDI 112 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~--------~~~y~~l 112 (433)
+.+.+++-+|+.-|+.|++-|.=+++||+++...|+.++..++.++.+++|++.++++|.. .++ +++|.++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLY-E~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLY-ENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhc-cCCCCCcEEEeehhHHHH
Confidence 3456699999999999999999999999999999999999999999999999999999963 222 4799999
Q ss_pred HHHhhchh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh
Q 013974 113 GEAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (433)
Q Consensus 113 ~~~~~G~~-~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~ 191 (433)
+..+++|. |+..+.+.+.+.+..+|+.|.+..+|.+++.+|....+ +.-|+++....++|+.+++++|-.+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHH
Confidence 99999884 66778889999999999999999999999999875432 3457788889999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhhhc--cccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHH
Q 013974 192 YLSATGVVATILIVLCVLFLG--TIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCF 269 (433)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 269 (433)
++|.++.++-+++-++++.+. ...++.+.......+..+++..+|+++|+|..|..+|++...|++|+++..++.++.
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsH 342 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSH 342 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHH
Confidence 999999888777666555553 345666655555567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC----------
Q 013974 270 ALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG---------- 339 (433)
Q Consensus 270 ~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~---------- 339 (433)
+...++-..+|..+|++|++.++..|..|+|+.. +..+.+++.++..+.|||+-++...+.+|+.+...
T Consensus 343 IAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 343 IAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHHheeeeechhhHHHHhcCCCccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 9999999999999999999999999999999754 46778888999999999999999999999976332
Q ss_pred --CCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhHhhhhhHhHHHHH
Q 013974 340 --ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVI 416 (433)
Q Consensus 340 --~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~ 416 (433)
+.+.+-+.+.+|.++++.+.+.|+.+|++..+++++|++.+.+ +|++|+++|+++.++.....++..+..++++|..
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~ 501 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCS 501 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeee
Confidence 3344566777899999999999999999999999999999999 9999999999999999888899999999999999
Q ss_pred HHHHhHHHHHHHHHhhC
Q 013974 417 CAILGTFSSVAKIAENY 433 (433)
Q Consensus 417 ~~v~gt~~~i~~~i~~~ 433 (433)
+.+.|.|.+..++|++|
T Consensus 502 ~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 502 VCVSGVYFSSMELIRAI 518 (524)
T ss_pred EEEEeEehhhHHHHHHH
Confidence 99999999999999875
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=336.95 Aligned_cols=386 Identities=22% Similarity=0.370 Sum_probs=324.0
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
+++.|.+.+++|+.|+++|+|++++|++|++.|.+ |++++.+++.++.++.+++.+++. ..++++|+++++..+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~-~~~~~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAK-KSGERTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhh-hcCCCCHHHHHHHHcCCCc
Confidence 34578999999999999999999999999999988 999999999999999999999986 5555599999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC-CCCCCc-ccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS-LDWPGF-QLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~-~~~~~~-~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
+............| +++|.+.++|.+..+..... +++.+. +.+++..+.+....+++|++..|++.++++.|.++..
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 65555555555555 69999999999986654432 122221 2344444677888999999999999999999999998
Q ss_pred HHHHHHHHhhhhcccccc---cc-CCCCccccccChhhhhhhHhhhcccccchhhHHhhccchh--hhHHHHHHHHHHHH
Q 013974 200 ATILIVLCVLFLGTIEGI---GF-HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT--KFTKALITCFALCV 273 (433)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~--~~~~~~~~~~~~~~ 273 (433)
+.......+++.....+. .. ...+....+++++.++++++|||.||++..++++|||+|+ |+.++...+...+.
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 888777776666555332 11 1112222336889999999999999999999999999997 68899999999999
Q ss_pred HHHHHHHhHHHHhhcccchhhhhhcCCCchhh------HHHHHHHHHHHhhhhccccccchHHHHHhhcCCCC----Cch
Q 013974 274 LIYGGVAVMGFLMFGQGTLSQITLNMPPHAFA------SKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI----SNN 343 (433)
Q Consensus 274 ~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~----~~~ 343 (433)
++|..+|.+||+.||+++.+|++.++++.+.. ....+..++++...++|+..+|+|..+++.+.+.. ...
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999876543 46788899999999999999999999988775443 255
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhHhhhhhHhHHHHHHHHHhH
Q 013974 344 YWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGT 422 (433)
Q Consensus 344 ~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~gt 422 (433)
..++.+++..++....+.|+++|+++.+..++||+++.. +|++|+++|++..|+ ..+++...+....+|+...+.|+
T Consensus 321 ~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~ 398 (411)
T KOG1305|consen 321 GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGV 398 (411)
T ss_pred ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999 999999999998766 66677888999999999999999
Q ss_pred HHHHHHHHhh
Q 013974 423 FSSVAKIAEN 432 (433)
Q Consensus 423 ~~~i~~~i~~ 432 (433)
...+.++..+
T Consensus 399 ~~~i~~~~~~ 408 (411)
T KOG1305|consen 399 AVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=265.83 Aligned_cols=379 Identities=18% Similarity=0.197 Sum_probs=282.1
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-CHHHHHHHhhchh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-TYPDIGEAAFGKY 120 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 120 (433)
+.+.+..+.+.++.++++|+|+|++|++++..|+. +++++++.+.++.++++++.|+..+.++.+ ++.+++++.+||+
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 34468899999999999999999999999999998 999999999999999999999988777764 9999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~ 200 (433)
|+++.++.+.+.+++.+.+|.+..+|.+++.+++... .+...+....++...++.++++.++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~----~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG----LNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc----cCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886321 110245555666667777799999999999888887665
Q ss_pred HHHHHHHhhhhcccc-ccccCCCCc--cccccChhhhhhhHhhhcccccchhhHHhhccchh-h-hHHHHHHHHHHHHHH
Q 013974 201 TILIVLCVLFLGTIE-GIGFHPTGQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K-FTKALITCFALCVLI 275 (433)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~-~~~~~~~~~~~~~~~ 275 (433)
+....+...+..... ..+....+. ...+..+..++|+++|||+||+++|++.+|||+++ | .+|+..++..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 554444333332221 111111111 25577888999999999999999999999999776 4 999999999999999
Q ss_pred HHHHHhHHHHhhcccchhhhhhcCCCchh-------------hHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCC-
Q 013974 276 YGGVAVMGFLMFGQGTLSQITLNMPPHAF-------------ASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS- 341 (433)
Q Consensus 276 y~~~g~~gy~~fg~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~- 341 (433)
|..+++.+|..+|+.+.+++..++++++. .....+.+..+++.+++-.......|..++.+..++.
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~ 321 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK 321 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc
Confidence 99999999999999999999988877542 2333344555555555555555666666666653211
Q ss_pred ---chhh--HHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhHhhhhhHhHHHH
Q 013974 342 ---NNYW--CFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQIVSSTAIAVLGV 415 (433)
Q Consensus 342 ---~~~~--~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 415 (433)
+..+ .........+.....++...|..+.+.+.+|+..... .++.|...++|....+..+.++...++++++|+
T Consensus 322 ~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi 401 (415)
T COG0814 322 PGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGI 401 (415)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHH
Confidence 1111 1222333344445566666666666777777777766 777777777665444433332346788888888
Q ss_pred HHHHHhHHHH
Q 013974 416 ICAILGTFSS 425 (433)
Q Consensus 416 ~~~v~gt~~~ 425 (433)
..+....++.
T Consensus 402 ~~~~~~~~~~ 411 (415)
T COG0814 402 LVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=1.7e-26 Score=222.74 Aligned_cols=345 Identities=19% Similarity=0.209 Sum_probs=252.7
Q ss_pred CCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhH
Q 013974 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (433)
+.+.+++++.+.++++|+|+|+||.+.+..|+. +.+.+++++..+++++.++.|...+.++..++.+++++.+||+|++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 467899999999999999999999999999998 9999999999999999999999887888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHH
Q 013974 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (433)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (433)
+..+...+..+..+++|....++.+++.++.... ...+.+ ...++..++...+... ..+...+++..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~~~-~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLSPW-LSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCcHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876321 112222 2222222222222222 222334443333222222
Q ss_pred HHHHhhhhccccccccC---C-CCccccccChhhhhhhHhhhcccccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHH
Q 013974 204 IVLCVLFLGTIEGIGFH---P-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGG 278 (433)
Q Consensus 204 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~~ 278 (433)
.... ......++.+.+ . +....++...+.++|+..+||..|+.+|++.+.++ |++|.+|++..+..+..++|+.
T Consensus 156 ~~~~-l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 156 SFII-LVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHH-HHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 111112222221 1 22345678888999999999999999999999996 7779999999999999999988
Q ss_pred HHhHHHHh-----------hcccchh--hhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchhh
Q 013974 279 VAVMGFLM-----------FGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYW 345 (433)
Q Consensus 279 ~g~~gy~~-----------fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~ 345 (433)
.-...-.. -+++..+ ....+..++.....+...+..+++.+|+-......+|.++|.+..++ ...
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~--~~~ 312 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN--NSS 312 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--ccc
Confidence 43322211 1111111 12334444556677788889999999999999999999999987632 333
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHH-HHHhhHHHHHHHhcccc
Q 013974 346 CFILLRTALVFSSVCAAFLLPF-FSLVMALIGSLLSIL-AIIMPSLCFIKILGRKA 399 (433)
Q Consensus 346 ~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~ 399 (433)
.|.....+....+.++|...|+ +...++++| ..... ..++|+++.+|.|++++
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 4455556667778899999995 889999999 77777 99999999999876553
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=2.9e-26 Score=218.75 Aligned_cols=346 Identities=14% Similarity=0.142 Sum_probs=251.4
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
+++.+..+++..+.+++||+|+|++|.+.++.|+. +.++++++|....+++.++.|...+.++..++..++|+.+||.|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 45589999999999999999999999999999999 99999999999999999999998777888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc--ccCchhhHhHHHHHH
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL--RDLRVISYLSATGVV 199 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~--~~~~~l~~~s~~~~~ 199 (433)
+.+.++...+..+..+.+|+...+|.+.+.+++... ..+ +..-.++..++.-.+.+. +..+++.++-..+++
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~-----~i~-~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i 161 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL-----NVP-ARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKV 161 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC-----CCc-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875221 111 222233333333333333 233344444443333
Q ss_pred HHHHHHHHhhhhccccccccCCC--CccccccChhhhhhhHhhhcccccchhhHHhhcc-chhhhHHHHHHHHHHHHHHH
Q 013974 200 ATILIVLCVLFLGTIEGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIY 276 (433)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y 276 (433)
..+...+.. .....+..+.... .....+...+.++|++++||+.|+.+|++.++++ |++|.+|++..+..+..++|
T Consensus 162 ~~f~~~~~~-l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~y 240 (414)
T PRK10483 162 ITFFLTFGS-LLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALY 240 (414)
T ss_pred HHHHHHHHH-HHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 322222211 1111221111111 1112245677899999999999999999999986 57799999999999999999
Q ss_pred HHHHhHHHHhhcccc----------hhhh---hhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCch
Q 013974 277 GGVAVMGFLMFGQGT----------LSQI---TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNN 343 (433)
Q Consensus 277 ~~~g~~gy~~fg~~~----------~~~i---~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~ 343 (433)
+.--......-+.+. .+.. +.+..++.....+..++..+++.+||-......+|.+.|.+..+++
T Consensus 241 l~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~-- 318 (414)
T PRK10483 241 TIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS-- 318 (414)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--
Confidence 994333322212111 1111 1122233355566778888899999999999999999999876642
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHhhHHHHHHHhcc
Q 013974 344 YWCFILLRTALVFSSVCAAFLLPF-FSLVMALIGSLLSILAIIMPSLCFIKILGR 397 (433)
Q Consensus 344 ~~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~G~~~~~~~~ilP~l~~l~~~~~ 397 (433)
...|.....+.++.+.+++.+.|+ |-..++++|..+....-++|+++.+|.||+
T Consensus 319 ~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 319 AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR 373 (414)
T ss_pred cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223444556677889999999996 888999999875444889999999999865
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=9.2e-26 Score=215.03 Aligned_cols=367 Identities=14% Similarity=0.153 Sum_probs=256.3
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+....+..+.++++|+|+|++|.+.++.|+. +.++++++|....+|+.++.|...+.++..++..++|+.+||.|+.+
T Consensus 9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 37888999999999999999999999999999 99999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc--ccCchhhHhHHHHHHHHH
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL--RDLRVISYLSATGVVATI 202 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~--~~~~~l~~~s~~~~~~~~ 202 (433)
.++...+..+..+++|+...++.+++.++.. .+.....+ ...++.+++.-++.+. +..++..++-..+++..+
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~----~~~~i~~~-~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f 163 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMN----LGYHANPR-IVGICTAIFVASVLWISSLAASRITSLFLGLKIISF 163 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhh----ccCCCcHH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998641 11122222 2223333333333333 223333333332222222
Q ss_pred HHHHHhhhhccccccccCCCCcccc----ccChhhhhhhHhhhcccccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHH
Q 013974 203 LIVLCVLFLGTIEGIGFHPTGQVVK----WSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYG 277 (433)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~ 277 (433)
... +.......+..+.....+..+ +..++.++|++.+||+.|+++|++.+.++ |++|.+|++..+..+..++|.
T Consensus 164 ~~~-~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~ 242 (415)
T PRK09664 164 VIV-FGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYL 242 (415)
T ss_pred HHH-HHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 111 111112222222211111111 23477899999999999999999999995 667899999999999999987
Q ss_pred H--HHhHHH---------Hhhcccchhhhh--hcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchh
Q 013974 278 G--VAVMGF---------LMFGQGTLSQIT--LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (433)
Q Consensus 278 ~--~g~~gy---------~~fg~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~ 344 (433)
. .++.|- ...|++...-+. ..-.++.+...+..++..+++.+||-.......|.+.|.+..+++ +
T Consensus 243 ~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~ 320 (415)
T PRK09664 243 FWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--H 320 (415)
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c
Confidence 6 222231 112222211111 111333455667778888899999999999999999999866642 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHhhHHHHHHHhcc-ccchh----hHhhhhhHhHHHHHHH
Q 013974 345 WCFILLRTALVFSSVCAAFLLPF-FSLVMALIGSLLSILAIIMPSLCFIKILGR-KATRT----QIVSSTAIAVLGVICA 418 (433)
Q Consensus 345 ~~~~~~~~~~~~~~~~ia~~~p~-~~~v~~l~G~~~~~~~~ilP~l~~l~~~~~-~~~~~----~~~~~~~~~~~g~~~~ 418 (433)
..|.....+.++.+.+++.+.|+ |-..++++|..+....-++|+++.+|.||+ ....+ .+..-...+.+|++..
T Consensus 321 ~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii 400 (415)
T PRK09664 321 GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVI 400 (415)
T ss_pred ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHH
Confidence 34555566677888999999996 888999999975544889999999999865 22222 2333444555555554
Q ss_pred HH
Q 013974 419 IL 420 (433)
Q Consensus 419 v~ 420 (433)
+.
T Consensus 401 ~~ 402 (415)
T PRK09664 401 LC 402 (415)
T ss_pred HH
Confidence 43
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=8.9e-26 Score=216.55 Aligned_cols=364 Identities=15% Similarity=0.185 Sum_probs=256.8
Q ss_pred chHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHHH
Q 013974 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (433)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (433)
+..++++.+.++++|+|+|+||.+.+..|+. +++++++++.+..|+++.+.|+..+.++..++.+++|+.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7789999999999999999999999999998 999999999999999999999877677778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHH---HHHHHHH
Q 013974 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA---TGVVATI 202 (433)
Q Consensus 126 ~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~---~~~~~~~ 202 (433)
.+...+..+..+.+|....++.+.+.++.+. +.+.+.... .+...++....... ..+...++.. .+++..+
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~~~~-~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSPTAG-VLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCChHHH-HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888776421 111222222 22222221112222 2233333333 3322222
Q ss_pred HHHHHhhhhccccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 013974 203 LIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAV 281 (433)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~~~g~ 281 (433)
. ..+.......+..+....++ +...++.++|++.+||+.|+.+|++.+.++ +++|.+|++.++..+..++|+..-.
T Consensus 158 ~-~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~ 234 (403)
T PRK15132 158 V-VMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQL 234 (403)
T ss_pred H-HHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111222222211111 112478899999999999999999999996 6679999999999999999998554
Q ss_pred HHHHhhcccc-----h-----hhhh---hcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchhhHHH
Q 013974 282 MGFLMFGQGT-----L-----SQIT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFI 348 (433)
Q Consensus 282 ~gy~~fg~~~-----~-----~~i~---~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (433)
.....-+.+. . ++.+ .+..++.+...+...+..+++.+|+-.......|.+.|.+.++++ ...|.
T Consensus 235 ~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~ 312 (403)
T PRK15132 235 ATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRL 312 (403)
T ss_pred HHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCc
Confidence 4443332221 1 1111 122234455667788888899999999999999999999865432 23355
Q ss_pred HHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHH-HHHhhHHHHHHHhccc-cchh----hHhhhhhHhHHHHHHHHHh
Q 013974 349 LLRTALVFSSVCAAFLLPF-FSLVMALIGSLLSIL-AIIMPSLCFIKILGRK-ATRT----QIVSSTAIAVLGVICAILG 421 (433)
Q Consensus 349 ~~~~~~~~~~~~ia~~~p~-~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~~~~g~~~~v~g 421 (433)
....+..+.+.++|...|+ +....+++|.. ... .+++|+++.+|.|+++ .+++ .+...+.++.+|++..+.-
T Consensus 313 ~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 313 QTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred hhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHH
Confidence 6667788889999999996 88889999976 455 9999999999988654 2222 3455667777777766544
Q ss_pred H
Q 013974 422 T 422 (433)
Q Consensus 422 t 422 (433)
.
T Consensus 392 ~ 392 (403)
T PRK15132 392 F 392 (403)
T ss_pred H
Confidence 3
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=1.6e-25 Score=217.82 Aligned_cols=338 Identities=14% Similarity=0.143 Sum_probs=245.6
Q ss_pred HHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHHHHHHHH
Q 013974 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (433)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 130 (433)
+..++++++|+|++++|.++++.|.. +++.+++.+..+.++..++.|.+.+.|+..++.+++++.+||+++++..+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 44578999999999999999889988 99999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHHHhhh
Q 013974 131 TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLF 210 (433)
Q Consensus 131 ~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~ 210 (433)
+.++..+.+|....++.+..+++.... ... .+....++..+++.++ ..+..+...+++.+.+...+...+..+.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~----~~~-~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFG----FPW-SARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888764221 111 1222333333333333 3446677777777665554433322222
Q ss_pred hcc--ccccccCCCCc-cccccChhhhhhhHhhhcccccchhhHHhhcc-chhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 013974 211 LGT--IEGIGFHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (433)
Q Consensus 211 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 286 (433)
... .+..+..+... ..++.++..+++...++|++|+.++++.+|++ +++|.+|+...+..++.++|..+.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 211 11112211111 12456777899999999999989999999996 656899999999999999999876665554
Q ss_pred hcccchhhhh-------------hcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchhhHHHHHHHH
Q 013974 287 FGQGTLSQIT-------------LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTA 353 (433)
Q Consensus 287 fg~~~~~~i~-------------~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (433)
.+.+...+.. .+..++.+...+...+..+++.+++.....+.+|.+.+.+++++.+ .+|.....+
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~--~~~~~~~~~ 314 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK--KGRFKTGLL 314 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCchhhhh
Confidence 4432222111 1111122345566777778889999999999999998888775322 224455566
Q ss_pred HHHHHHHHHhhcccHH-HHHHHHhHHHHHH-HHHhhHHHHHHHhccc
Q 013974 354 LVFSSVCAAFLLPFFS-LVMALIGSLLSIL-AIIMPSLCFIKILGRK 398 (433)
Q Consensus 354 ~~~~~~~ia~~~p~~~-~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~ 398 (433)
..+.+.++|.+.|+.. ..++.+| ++... .+++|+++++|.||++
T Consensus 315 ~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 315 TFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred hHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 6677889999999744 8889999 77777 9999999999987653
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=1.7e-21 Score=185.91 Aligned_cols=365 Identities=13% Similarity=0.142 Sum_probs=251.4
Q ss_pred HHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCCHHHHHHHhhchhhhHHHHHH
Q 013974 51 TIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK-EGITTYPDIGEAAFGKYGRLLISVL 128 (433)
Q Consensus 51 ~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~ 128 (433)
-...+.++.+|+|+|+||......|.. +++++++++.+++++++.+.|...+. ++..++.+++++.+||+|+.+..+.
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 348899999999999999999999988 99999999999999999999987655 6678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHHHh
Q 013974 129 LYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCV 208 (433)
Q Consensus 129 ~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~ 208 (433)
.++..+..+.+|...+.+.+.+++.+.. +.....+....++..+++...... .-+.+.+++..-+...+... ..
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql----~~~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l-~~ 177 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL----GFAPLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASL-VL 177 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcCCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH-HH
Confidence 9999999999999999988887654421 110112334444333333333333 22434444333222222111 11
Q ss_pred hhhccccccc---cCCCC-----cccc---ccChhhhhhhHhhhcccccchhhHHhh----cc-----c--hhhhHHHHH
Q 013974 209 LFLGTIEGIG---FHPTG-----QVVK---WSGMPFAIGIYGFCYSGHSVFPNIYQS----MA-----D--KTKFTKALI 266 (433)
Q Consensus 209 ~~~~~~~~~~---~~~~~-----~~~~---~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~~~ 266 (433)
......++++ ....+ ...+ ...++.++|++.+||+.|+.+|++... .+ | ++|.+|++.
T Consensus 178 l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 178 ISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred HHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 1122222222 11111 0001 124778999999999999999999999 43 3 457889999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccch-----hhhh------hcCCCc--------hhhHHHHHHHHHHHhhhhccccccc
Q 013974 267 TCFALCVLIYGGVAVMGFLMFGQGTL-----SQIT------LNMPPH--------AFASKVAVWTTVINPFTKYALLMNP 327 (433)
Q Consensus 267 ~~~~~~~~~y~~~g~~gy~~fg~~~~-----~~i~------~~~~~~--------~~~~~~~~~~~~~~~~~s~p~~~~~ 327 (433)
++..+..++|+...+.+...-+++.. +|.. ..+++. .....+..++..+++.+|+-.....
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LG 337 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLG 337 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977776665543221 1211 112321 3345666777778999999999999
Q ss_pred hHHHHHhhcCC----C---CCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhcccc
Q 013974 328 LARSIEELLPA----G---ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKA 399 (433)
Q Consensus 328 ~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~ 399 (433)
.+|.++.+..+ . +.+.+..+......+.+.+.+++..-|++-.+++..|+=...+ .|++|...-+|...-+
T Consensus 338 l~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~- 416 (443)
T PRK13629 338 TLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLA- 416 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHH-
Confidence 99999888731 1 1234455666777778888999999999888888554444445 9999999988864322
Q ss_pred chhh-HhhhhhHhHHHHHHHHHhHH
Q 013974 400 TRTQ-IVSSTAIAVLGVICAILGTF 423 (433)
Q Consensus 400 ~~~~-~~~~~~~~~~g~~~~v~gt~ 423 (433)
++| +..++.+.+.|++......|
T Consensus 417 -~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 417 -KYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred -HhCCCchhHHHHHHHHHHHHHHHH
Confidence 222 23478888888887665555
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.88 E-value=2.1e-20 Score=180.06 Aligned_cols=360 Identities=13% Similarity=0.149 Sum_probs=245.0
Q ss_pred HHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCCHHHHHHHhhchhhhHHHH
Q 013974 49 TQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKYGRLLIS 126 (433)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~ 126 (433)
..-.+.+.++++|+|+|.+|...++.||. .++..++.+.++++++..+.|.....+ +..++.|++++.|||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 35678899999999999999999999999 777788888888999998888744344 3799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHH
Q 013974 127 VLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVL 206 (433)
Q Consensus 127 ~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~ 206 (433)
+..++..+..+.+|....++.+.+++.+.. +.+...+... .+..++.+-.......+.+.+++.+-+...+...+
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~----~~~~p~~~i~-~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVNQL----GTAPPLRGLL-SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHHH-HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887765421 1111122122 22222222223333566666666654433322222
Q ss_pred Hhhhh--ccccccccCCCCc-cccccChhhhhhhHhhhcccccchhhHH----hhcc--c--hhhhHHHHHHHHHHHHHH
Q 013974 207 CVLFL--GTIEGIGFHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIY----QSMA--D--KTKFTKALITCFALCVLI 275 (433)
Q Consensus 207 ~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~--~--p~~~~~~~~~~~~~~~~~ 275 (433)
..... ...+..+....++ ...+.++..++++..+||.+|+.++++. +|.+ | ++|.+|+...+..+..++
T Consensus 161 ~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 161 LLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 22211 1122222221121 1235678899999999999999999998 3343 2 457889999999999999
Q ss_pred HHHHHhHHHHhhcccchh-----hh--h---hcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcC----CC--
Q 013974 276 YGGVAVMGFLMFGQGTLS-----QI--T---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP----AG-- 339 (433)
Q Consensus 276 y~~~g~~gy~~fg~~~~~-----~i--~---~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~----~~-- 339 (433)
|+..-+.+....+.+... |+ + .|-.++.....+..++..+++.+|+-.....++|.+++++. .+
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~ 320 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK 320 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Confidence 999877777666543321 21 1 11222335556677778889999999999999999999872 11
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHH-HhHHHHHHHHHhhHHHHHHHhccccchhh-HhhhhhHhHHHH
Q 013974 340 ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMAL-IGSLLSILAIIMPSLCFIKILGRKATRTQ-IVSSTAIAVLGV 415 (433)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l-~G~~~~~~~~ilP~l~~l~~~~~~~~~~~-~~~~~~~~~~g~ 415 (433)
+.+++........+....+..++..-|++-.+++- .|-+.+...|++|...-+|...- +++| +..++.+...|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l--~~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 321 KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPAL--KKYRGRISNVFVTVIGL 396 (397)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHH--HHhCCCcchheeEeeec
Confidence 22334445566677778888999999998888884 44444444999999998886432 2222 234666666554
No 16
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.80 E-value=4.1e-17 Score=153.58 Aligned_cols=347 Identities=17% Similarity=0.216 Sum_probs=235.5
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 116 (433)
++.+.+|+.+.++.-++.+++.||+| .++-..+.+.+|.--++..++.|.+...-++.+.|+..+.|..+++.+++++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~ 86 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY 86 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 34456788999999999999999999 55677889999998888999999999999999999998889999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHH--HhhhhccccCchhhHhH
Q 013974 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALI--VLPTIWLRDLRVISYLS 194 (433)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~pl~~~~~~~~l~~~s 194 (433)
+|++++++++|..+..-..++++....++.+++.++++. + ++.+.+...++ ..-+...|...++-.+-
T Consensus 87 lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P---------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWf 156 (462)
T COG1113 87 LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-P---------QWVFALAAVVLLLAVNLISVKVFGELEFWF 156 (462)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874 2 22332322222 22233334443333222
Q ss_pred HHHHHHHHHHH----HHhhhhcccccc---ccC---C--CCccccccChhhhhhhHhhhcccccchhhHHhhccchhh-h
Q 013974 195 ATGVVATILIV----LCVLFLGTIEGI---GFH---P--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTK-F 261 (433)
Q Consensus 195 ~~~~~~~~~~~----~~~~~~~~~~~~---~~~---~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~ 261 (433)
.+-.+..++.+ +.++..+...+. +.+ . .-.+.++.++..++...+|||.|.+.+-....|-|||+| .
T Consensus 157 AlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i 236 (462)
T COG1113 157 ALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI 236 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence 22111111111 111111111111 111 1 112345678889999999999999999999999999985 7
Q ss_pred HHHHHHHHHHHHHHHHH-----HHhHHHHhhcccchhhhh-hcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhh
Q 013974 262 TKALITCFALCVLIYGG-----VAVMGFLMFGQGTLSQIT-LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (433)
Q Consensus 262 ~~~~~~~~~~~~~~y~~-----~g~~gy~~fg~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~ 335 (433)
+|+.+-...-..++|+. +.+..+-.++++.++.+. ...-+-.....+.++..+.+..+++....+...+.+..+
T Consensus 237 pkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 237 PKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 78888777777777765 555566555555544443 121111233444455555666677777777777777665
Q ss_pred cCCC----------CCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHH--HHH-HHHhhHHHHHHHhc
Q 013974 336 LPAG----------ISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLL--SIL-AIIMPSLCFIKILG 396 (433)
Q Consensus 336 ~~~~----------~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~--~~~-~~ilP~l~~l~~~~ 396 (433)
-.+. ++.-.+.......+...+..++....| +.+..++-+.+ ..+ .+.+=.+.|+|.||
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 122244566677778888889999999 34444422222 233 66677788888876
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.79 E-value=4.1e-16 Score=154.64 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=158.8
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (433)
+|+.+.++.+...+++++|+|++.+|..+++.|..+++.+++.+++.......+.|.+.+.|+........++.+||+..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~g 84 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGN 84 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchH
Confidence 56699999999999999999999999888888877888999999999999999999988888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHH-HHHHHHhhhhccccCchhhHhHHHHHHHH
Q 013974 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI-LTALIVLPTIWLRDLRVISYLSATGVVAT 201 (433)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 201 (433)
++..+...+........+.....+++..+++... +....+.+ +..+...-....+..+...+++.+.....
T Consensus 85 f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~ 156 (438)
T PRK10655 85 FMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGV 156 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999987766655555555555677766655311 11111111 11111122222334454555544433322
Q ss_pred HHHHHHhhhh--ccccccccCCCCccc---cccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHH
Q 013974 202 ILIVLCVLFL--GTIEGIGFHPTGQVV---KWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (433)
Q Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~ 275 (433)
+...+.+... ...+..+..+..... .+.++..++....|+|.|.+.+..+.+|+|||+ +.||++..+..++.++
T Consensus 157 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~ 236 (438)
T PRK10655 157 IIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVI 236 (438)
T ss_pred HHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHH
Confidence 2211111111 111111211111111 123455667788999999999999999999998 7999999999999999
Q ss_pred HHHHHhHHH
Q 013974 276 YGGVAVMGF 284 (433)
Q Consensus 276 y~~~g~~gy 284 (433)
|.+......
T Consensus 237 Y~l~~~~~~ 245 (438)
T PRK10655 237 YIVSTNVIA 245 (438)
T ss_pred HHHHHHHHH
Confidence 998665443
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.78 E-value=1.4e-15 Score=151.20 Aligned_cols=231 Identities=13% Similarity=0.190 Sum_probs=158.1
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
+.+|+.+.++.....+++++|+|++..|. +.+++|...++.+++.+++....+..+.|.+.+.|..++....+++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 45677999999999999999999999885 45677766888899999999999999999999899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
...+++.+..++.......+.....+.+++.+++.. ....+.+.. ..++-....++.+..+++......
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV----------PTWIWAAAF-FIIINAVNLVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC----------cHHHHHHHH-HHHHHHHHHhcchhhhhHHHHHHH
Confidence 999999998877766666666666666766554421 111111111 122222233344444444332221
Q ss_pred HHH---HHHHH-hhh--hcccccc--ccCC---CC--ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHH
Q 013974 200 ATI---LIVLC-VLF--LGTIEGI--GFHP---TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (433)
Q Consensus 200 ~~~---~~~~~-~~~--~~~~~~~--~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (433)
..+ +..+. .++ ....++. +.+. .. ...++.++..++....|+|.|.+.+....+|+|||+ +.||++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 111 11111 111 1111111 1110 00 112455677889999999999999999999999998 689999
Q ss_pred HHHHHHHHHHHHHHHhH
Q 013974 266 ITCFALCVLIYGGVAVM 282 (433)
Q Consensus 266 ~~~~~~~~~~y~~~g~~ 282 (433)
..+.....++|......
T Consensus 247 ~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 247 NQVVYRILLFYIGSLVV 263 (458)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999875444
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.76 E-value=3e-15 Score=149.02 Aligned_cols=234 Identities=17% Similarity=0.221 Sum_probs=160.9
Q ss_pred CccCCCCCchHHHHHHHHHHhhccccchhH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhh
Q 013974 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (433)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (433)
+.+.+|+.+.++.....+++++|+|++.+| .+.+++|..+++.+++.+++.......+.|.+.+.|..++..+.+++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 344677899999999999999999999999 6677888768888999999999999999999988899899999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHH
Q 013974 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (433)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~ 197 (433)
||+..+++.+..++.....+.......+++++.+++.. ......++. +++.-.......+...++....
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~-~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI----------PLWLFSLIL-TIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHHHHHH-HHHHHHHHHHhcchhhHHHHHH
Confidence 99999999998888777777777777777777665431 111111111 1112222223444444444332
Q ss_pred HHHHHH---HHHHh-h--hhccccc---cccC---C-CCc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhH
Q 013974 198 VVATIL---IVLCV-L--FLGTIEG---IGFH---P-TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (433)
Q Consensus 198 ~~~~~~---~~~~~-~--~~~~~~~---~~~~---~-~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (433)
....++ ..+++ . .....+. .+.. . ... +.++.++..++....|+|.|.+.+..+.+|+|||+ +.|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 222111 11111 1 1111110 0010 0 111 12334577888999999999999999999999998 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 013974 263 KALITCFALCVLIYGGVAVMG 283 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~g 283 (433)
|++..+......+|+......
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888865443
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.76 E-value=3.2e-15 Score=149.90 Aligned_cols=235 Identities=12% Similarity=0.060 Sum_probs=150.5
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
+.+|+.+.++.....+++++|+|++..|. +.+++|..+++.+++.+++....+..+.|.+.+.|..++....+++.+||
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 36677999999999999999999999885 66788877788889999999999999999998899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
+..+++.|..++.............+.+.... +.. .+ .....+.++..+ ++-.......+...++......
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~----~~---~~~~~~~~~~~~-l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF----GG---VPQWVFALAALT-IVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC----CC---CcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765444444444444444322 111 00 011122221222 2222233344444444433221
Q ss_pred HH---HHHHHHhhhhcccccccc--CC---------CCc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHH
Q 013974 200 AT---ILIVLCVLFLGTIEGIGF--HP---------TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (433)
Q Consensus 200 ~~---~~~~~~~~~~~~~~~~~~--~~---------~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (433)
.. ++.++++.......+.+. +. ... +.++..+..++....|+|.|.+.+....+|.|||+ +.||
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 11 111111111110111100 00 000 11122333455678999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 013974 264 ALITCFALCVLIYGGVAVMGF 284 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy 284 (433)
++..+...+.++|+.......
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888655433
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.76 E-value=3.1e-15 Score=149.51 Aligned_cols=233 Identities=11% Similarity=0.091 Sum_probs=152.0
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHHH-HhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
+.+|+.+.++.....+++++|+|++..|.. .+.+|.. .++.+++.+++.......+.|.+.+.|+...+...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 356779999999999999999999998855 5778865 67788888999999999999999889998999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHH
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~ 198 (433)
|...+++.|..++.............+..+..+.+. . ......++..+ ++-+...+..+...+++....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~------~~~~~~~~~~~-~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----V------PVWPWCLLFCA-LIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----C------cHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 999999999887776555544444444444433332 1 11111111111 122223334444444332221
Q ss_pred HHHHHHH---HHh-hh--hcc--ccccc----cC---CCCc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hh
Q 013974 199 VATILIV---LCV-LF--LGT--IEGIG----FH---PTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (433)
Q Consensus 199 ~~~~~~~---~~~-~~--~~~--~~~~~----~~---~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (433)
...++.. +.. +. ... ..+.+ .+ ...+ ..+..++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 1111111 111 11 010 00000 00 0000 01122456677778999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013974 262 TKALITCFALCVLIYGGVAVMGF 284 (433)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~g~~gy 284 (433)
||++..+...+.++|....+...
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~ 262 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLA 262 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998765443
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.76 E-value=3.7e-15 Score=148.01 Aligned_cols=236 Identities=10% Similarity=0.109 Sum_probs=156.1
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
.+|+.+.++.+...+++++|+|++.+|....+.|...+..+++.++........+.|.+.+.|+....-+.+++.+||..
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchH
Confidence 45679999999999999999999999988877775566677777888888888999998889988877788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHH
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 201 (433)
.+++.+..++.......+......++...+++....+ .......+..+..+-.......|...+++.......
T Consensus 86 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~ 158 (445)
T PRK10644 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------LVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 9999988776655455555545555655554431100 011111111111222223334555555555443332
Q ss_pred HHHHHHhhhhc--cccccccCCCCc---cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHH
Q 013974 202 ILIVLCVLFLG--TIEGIGFHPTGQ---VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (433)
Q Consensus 202 ~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~ 275 (433)
++..+...... ..++.+...... ..++..+..++....|+|.|.+....+.+|+|||+ +.||++..+..++.++
T Consensus 159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~ 238 (445)
T PRK10644 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_pred HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHH
Confidence 22121111111 111111111111 11234455677789999999999999999999997 6999999999999999
Q ss_pred HHHHHhHHH
Q 013974 276 YGGVAVMGF 284 (433)
Q Consensus 276 y~~~g~~gy 284 (433)
|.++.+...
T Consensus 239 Y~l~~~~~~ 247 (445)
T PRK10644 239 YVLSSTAIM 247 (445)
T ss_pred HHHHHHHHH
Confidence 999776643
No 23
>PRK11021 putative transporter; Provisional
Probab=99.76 E-value=6.7e-15 Score=144.70 Aligned_cols=228 Identities=18% Similarity=0.195 Sum_probs=154.8
Q ss_pred CchHHHHHHHHHHhhccccchhHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+++++....+++|+|+|++.+|.. .+.+|...+..+++.++........+.|.+.+.|+.......+++.+||+..++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 3678999999999999999999955 466675588889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHH
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (433)
..+..+........+......+++...++.. . ... ....+...+++-+...+..+...+++....+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWS-----S---WQL-LLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----C---chH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9988775443333334344455665555421 0 011 111112222222334445555555555433222211
Q ss_pred HHHhhhhccccccccCCC-CccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhH
Q 013974 205 VLCVLFLGTIEGIGFHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~ 282 (433)
..........+..+.+.. ....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.++|......
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 1123456777889999999999999999999999997 69999999999999999997654
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.75 E-value=7.5e-15 Score=146.02 Aligned_cols=344 Identities=13% Similarity=0.157 Sum_probs=202.4
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchh
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (433)
.+|+.+.++..+..++++||+|++..| .+.+.+|...++.+++.+++....+..+.|.+.+.|...++.+.+++.+||.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 567799999999999999999999988 5567777766678888899999999999999988999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHH--
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV-- 198 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~-- 198 (433)
+.+++.+..++.............+.+++.+++.. + ...+..+..++ +-....+..+....+.....
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~----~------~~~~~~~~~~~-~~~lN~~gv~~~~~~e~~~~~~ 156 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM----A------QWIPALIAVAL-VALANLAAVRLYGEIEFWFAMI 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----c------hHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888776777777777777877665531 1 11221211111 11122223333333322111
Q ss_pred --HHHHHHHH---Hhhhhccccc-c-----ccCCCC-c-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHH
Q 013974 199 --VATILIVL---CVLFLGTIEG-I-----GFHPTG-Q-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (433)
Q Consensus 199 --~~~~~~~~---~~~~~~~~~~-~-----~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 264 (433)
..+..+.+ .+...+..++ . ++.++. . ..++.++..++....|+|.|.+.+....+|.|||+ +.||+
T Consensus 157 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~A 236 (461)
T PRK10746 157 KVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSA 236 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHH
Confidence 11111111 1111111111 0 111111 1 12355677899999999999999999999999998 69999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccchh----hh---hhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhh--
Q 013974 265 LITCFALCVLIYGGVAVMGFLMFGQGTLS----QI---TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL-- 335 (433)
Q Consensus 265 ~~~~~~~~~~~y~~~g~~gy~~fg~~~~~----~i---~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~-- 335 (433)
+..+...+.++|....+......+.+..+ +. ..+.. ......+.....+++.+.+....++...|.+...
T Consensus 237 i~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g-~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~ 315 (461)
T PRK10746 237 VGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG-ITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAK 315 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888888888544433333221111 11 11111 1122233344444555555444444444444332
Q ss_pred ---cCCC----CCchhh-HHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHH--HH-HHHhhHHHHHHHhcc
Q 013974 336 ---LPAG----ISNNYW-CFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLS--IL-AIIMPSLCFIKILGR 397 (433)
Q Consensus 336 ---~~~~----~~~~~~-~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~--~~-~~ilP~l~~l~~~~~ 397 (433)
+|+. +++..+ ....+......+...+....|+.+.+.+....+++ .. .|+++++.++|.+|+
T Consensus 316 ~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 316 NRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred CCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 111222 22222222222223333445555555554333322 34 888888888888764
No 25
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.75 E-value=5.2e-15 Score=146.38 Aligned_cols=236 Identities=12% Similarity=0.060 Sum_probs=161.5
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
.+|+.+.++.....+++++|+|++.+|...++.|...+..+++.++........+.|.+.+.|+.+...+.+++ +||..
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 35679999999999999999999999999988887677888888888889999999998889988887778888 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHH
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~ 201 (433)
.+.+.+..+...+....++.+...+++..+++....+ . ....+.+ ..+..+-+...+..+...+++.+..+..
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-----~-~~~~~~~-~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-----I-PAGIACI-AIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-----H-HHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999987776555555566666667777766532110 0 0111111 1111122233344555555554443332
Q ss_pred HHHHHHhhhhcc--cccc----ccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHH
Q 013974 202 ILIVLCVLFLGT--IEGI----GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (433)
Q Consensus 202 ~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~ 274 (433)
++..+.....+. .+.. +++. ....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+..++.+
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 222211111111 1111 1111 1112345677888999999999999999999999997 799999999999999
Q ss_pred HHHHHHhHHHHh
Q 013974 275 IYGGVAVMGFLM 286 (433)
Q Consensus 275 ~y~~~g~~gy~~ 286 (433)
+|....+.....
T Consensus 234 lYil~~~~~~~~ 245 (435)
T PRK10435 234 IYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHhc
Confidence 999977665433
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.75 E-value=1.7e-16 Score=151.98 Aligned_cols=358 Identities=14% Similarity=0.139 Sum_probs=224.3
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccccchhHHHH-hhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~--g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~ 114 (433)
++.+.+++.+.+..+..++++++|+|++..|.++ +++|.+ +++.+++.++++....++++|.....|+.+..-....
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 3445677799999999999999999999999776 677765 7788889999999999999999877777766666688
Q ss_pred HhhchhhhHHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc--ccCchh
Q 013974 115 AAFGKYGRLLISVLLYTELYSYC-VEFIILEGDN-LTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL--RDLRVI 190 (433)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~~~~~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~--~~~~~l 190 (433)
++||+...+...|.-.+...... ..+.+..+++ +++.++. .. . .+.....+.+.++..+..+ -+.+.-
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~-~------p~~~~~lla~~~l~~lt~~n~~~V~~a 157 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CD-V------PRVASKLLAAALLVLLTLINSFSVKWA 157 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CC-C------chHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 99999888877776665555555 7788888888 7888773 11 1 1111122222222222222 233333
Q ss_pred hHhHHHHHHHHHHHHHHhhhhcc---cccc--ccC---CCCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hh
Q 013974 191 SYLSATGVVATILIVLCVLFLGT---IEGI--GFH---PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (433)
Q Consensus 191 ~~~s~~~~~~~~~~~~~~~~~~~---~~~~--~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (433)
.+++.+..++.+.....+++.+. ..+. +.+ .+....+..++..++=...|||.|++.+-.+.+|+|||+ ++
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL 237 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccc
Confidence 33333333333333322222221 1111 111 122233456677889999999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhh-hhhcCC---CchhhHHHHHHHHHHHhhhhccccccchHHHH---
Q 013974 262 TKALITCFALCVLIYGGVAVMGFLMFGQ--GTLSQ-ITLNMP---PHAFASKVAVWTTVINPFTKYALLMNPLARSI--- 332 (433)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~g~~gy~~fg~--~~~~~-i~~~~~---~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~--- 332 (433)
|+++.+++.+++++|+++-+..+..-.. -..++ +...+. -+++. ....+...++.+.+....++...+.+
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999987765543321 11111 111111 11222 44445555555555555555444433
Q ss_pred --HhhcCCCCCc-h-hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHHhccccchhhH
Q 013974 333 --EELLPAGISN-N-YWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKILGRKATRTQI 404 (433)
Q Consensus 333 --~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~~~~~~~~~ 404 (433)
|.++|+.-.. + +...-...++......++..+.+|++.+++..+-..... ...+=+++++|.++++.++.-|
T Consensus 317 areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 317 AREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred HHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 2334332000 0 000111233333444555555678999999998888888 8888899999988877655444
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.75 E-value=8.5e-15 Score=146.27 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=157.4
Q ss_pred CCCchHHHHHHHHHHhhccccchhHHHH-hhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-CHHHHHHHhhchh
Q 013974 44 HGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-TYPDIGEAAFGKY 120 (433)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 120 (433)
|+.+.++.....+++++|+|++.+|... +.+|.. .++.+++.+.........+.|.+.+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 4588999999999999999999999765 566755 566788888888999999999988888754 7777799999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHH-HHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFG-ILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
..++..+..++........+.....+.+..+++.... ........ .+..+..+-....+..+...+++....+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999887776566666766666666665553211 00111111 1111112222223455555555554433
Q ss_pred HHHHHHHHhhh--hccccccccCC----C-C--c-c-ccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHH
Q 013974 200 ATILIVLCVLF--LGTIEGIGFHP----T-G--Q-V-VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (433)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~----~-~--~-~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 268 (433)
..+...+..+. ....++.+... . . . . ..+.++..++....|+|.|.+....+.+|.|++++.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 32221111111 11111111110 0 0 0 1 1123455677889999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHhHHHHhh
Q 013974 269 FALCVLIYGGVAVMGFLMF 287 (433)
Q Consensus 269 ~~~~~~~y~~~g~~gy~~f 287 (433)
...+.++|..+.+..+...
T Consensus 235 ~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 9999999999877665443
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.74 E-value=1.2e-14 Score=145.17 Aligned_cols=233 Identities=12% Similarity=0.160 Sum_probs=153.1
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
+.+|+.+.++.....+++++|+|++..| .+.+++|...+..+++.+++.......+.|.+...+...++.+.+++.+||
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 3677799999999999999999999988 567888876667777888888888888899876566667788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
...+++.|..++.......+.....+.++..+++.. ......++... ++-+......+...+++.+...
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----------~~~~~~~~~~~-~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----------SDWVASLAVVL-LLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998887765555556666666766655431 11121111111 1112222344444554443322
Q ss_pred HHHHHHHHhh----h-h-cccccc-----ccCC----CCc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhH
Q 013974 200 ATILIVLCVL----F-L-GTIEGI-----GFHP----TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (433)
Q Consensus 200 ~~~~~~~~~~----~-~-~~~~~~-----~~~~----~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (433)
..+...+.++ . . ...+.. +..+ ... +.++.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 2211111111 1 0 100000 0110 011 12344577889999999999999999999999998 589
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 013974 263 KALITCFALCVLIYGGVAVMGF 284 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~gy 284 (433)
|++..+.....++|........
T Consensus 246 rai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHe
Confidence 9998777777888887655443
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=99.74 E-value=2.2e-15 Score=149.26 Aligned_cols=241 Identities=17% Similarity=0.226 Sum_probs=165.6
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
+|+.+.++.....+++++|+|++.+|... ...|...++.+++.++........+.|..++.|+.++..+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 46799999999999999999999999665 45555567777888888888899999998888888778888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCccc----CchhH-HHHHHHHHHhhhhccccCchhhHhHHH
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQL----DSTHL-FGILTALIVLPTIWLRDLRVISYLSAT 196 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~----~~~~~-~~i~~~~~~~pl~~~~~~~~l~~~s~~ 196 (433)
.++..+...+........+....++++..+++....+.+.... +.... ...+..+++.-....+..+...+++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999998888877777788888888887776531111110000 00000 111222222223334466666666665
Q ss_pred HHHHHHHHHHHhhhhcc--ccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHH
Q 013974 197 GVVATILIVLCVLFLGT--IEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCV 273 (433)
Q Consensus 197 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~ 273 (433)
.....+...+....... .+..++++. ...++.++..++....|+|.|.+.+..+.+|+|||+ +.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 54443332222111111 111122211 122445677888899999999999999999999997 68999999999999
Q ss_pred HHHHHHHhHHH
Q 013974 274 LIYGGVAVMGF 284 (433)
Q Consensus 274 ~~y~~~g~~gy 284 (433)
++|........
T Consensus 241 v~Yil~~~~~~ 251 (429)
T TIGR00909 241 LLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHh
Confidence 99999876544
No 30
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.73 E-value=1.2e-14 Score=145.47 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=159.2
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCCHHHHHHHhhch
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG-WA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G-~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (433)
+|+.|.+++....+++++|+|++.+|....+.| .. .++.+++.++........+.|.+++.|+ .+...+..++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 567999999999999999999999998876544 43 5677888888888899999999888888 77778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHH-HHHHHHHhhhhccccCchhhHhHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFG-ILTALIVLPTIWLRDLRVISYLSATGV 198 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~pl~~~~~~~~l~~~s~~~~ 198 (433)
+..++..+..+.........+.....+++..+++....+ ....... .+..++..-....+..+...+++....
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG------NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999998877665666666666667777766532110 0111111 111111222233345565555555544
Q ss_pred HHHHHHHHHhhhhc--ccccccc----CCC--Cc-cccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHH
Q 013974 199 VATILIVLCVLFLG--TIEGIGF----HPT--GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCF 269 (433)
Q Consensus 199 ~~~~~~~~~~~~~~--~~~~~~~----~~~--~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 269 (433)
...+...+...... ..+..+. .+. +. ...+..+..++....|+|.|.+....+.+|+||+++.+|++..+.
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~ 239 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGT 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 33222211111111 1111111 111 00 112345666788899999999999999999999558999999999
Q ss_pred HHHHHHHHHHHhHHHH
Q 013974 270 ALCVLIYGGVAVMGFL 285 (433)
Q Consensus 270 ~~~~~~y~~~g~~gy~ 285 (433)
.++.++|.........
T Consensus 240 ~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 240 LGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999987665443
No 31
>PRK10836 lysine transporter; Provisional
Probab=99.73 E-value=4e-14 Score=142.15 Aligned_cols=234 Identities=13% Similarity=0.130 Sum_probs=146.9
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHH-HHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
+.+|+.+.++.....+++++|+|++.+|. +.+++|.. .++.+++.+++....+..+.|.+.+.|........+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 35677999999999999999999999994 66888876 78899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHH--
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT-- 196 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~-- 196 (433)
+..+++++|..++...............++..+++. .+ ...+..+..++ +-.......+....+...
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~------~~~~~~~~~~~-~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TP------GWIWSALFLGV-IFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----Cc------hHHHHHHHHHH-HHHHHHHcchhhhhhHHHHH
Confidence 999899998776643333222222222223333221 11 11111111111 112222233333332221
Q ss_pred -HHHHHHHHHH---Hhhhhcccccc------ccCCC--CccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHH
Q 013974 197 -GVVATILIVL---CVLFLGTIEGI------GFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (433)
Q Consensus 197 -~~~~~~~~~~---~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (433)
..+..++.++ .....+...+. +++.. +...++..+........|+|.|.+.+....+|.|||+ +.||
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 240 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR 240 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHH
Confidence 1111111111 11111111111 11100 0111233344445556799999999999999999998 6999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 013974 264 ALITCFALCVLIYGGVAVMGFL 285 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy~ 285 (433)
++..+...+.++|.........
T Consensus 241 Ai~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 241 AVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999987655433
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.73 E-value=5.1e-14 Score=140.30 Aligned_cols=232 Identities=14% Similarity=0.225 Sum_probs=155.7
Q ss_pred ccCCCCCchHHHHHHHHHHhhccccchhHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
++.+|+.+.++.....+++++|+|++.+|.. .+.+|...++.+++.++........+.|.+.+.|...+..+.+++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 3456779999999999999999999999955 567776678888899999999999999999889988888889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHH
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~ 198 (433)
|...+++.|..++.............+.++..+++... ...+.+... ++.-....+..+...++.....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVV-LIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHH-HHHHHHHHccchhHHHHHHHHH
Confidence 99999999988776655555555666666666554311 112222222 2222233334454554443222
Q ss_pred HHHHHHHH----H---hhhhccccc-c--c----cCCCC-ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhH
Q 013974 199 VATILIVL----C---VLFLGTIEG-I--G----FHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (433)
Q Consensus 199 ~~~~~~~~----~---~~~~~~~~~-~--~----~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (433)
...+...+ . +......+. . + ++... ...++.++..++....|+|.|.+.+....+|+|||+ +.|
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 21111111 0 111111111 1 1 11101 112234566788889999999999999999999998 589
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 013974 263 KALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~ 282 (433)
|++..+.....++|......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888776544
No 33
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.72 E-value=6.9e-15 Score=149.00 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=164.6
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHHHH--hhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV--KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~--~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
+.+|+.+.++.....+++++|+|++.+|... +.+|...++.+++.++.+......++|.+.+.|+.++.-...++.+|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 4677899999999999999999999999643 35776677788889999999999999999888887777777899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC----CCCCCCCc--c-cCchhHHHHHHHHHHhhhhccccCchhh
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG----ASLDWPGF--Q-LDSTHLFGILTALIVLPTIWLRDLRVIS 191 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~----~~~~~~~~--~-~~~~~~~~i~~~~~~~pl~~~~~~~~l~ 191 (433)
+...+++.|...+.......+.....++++..++.. ...+..+. . .........+..++++-....+..+..+
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESA 184 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999888777666666666666666655432 11100000 0 0011111111122222233445667666
Q ss_pred HhHHHHHHHHHHHHHHhhhhcc--ccccccCC-----C-Cc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hh
Q 013974 192 YLSATGVVATILIVLCVLFLGT--IEGIGFHP-----T-GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (433)
Q Consensus 192 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~-~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (433)
+++.......+...+.++..+. .+..++.. + +. +.++.++..+....+|+|.|.+.+.+..+|.|||+ +.
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 6666544433332222222221 11112211 0 11 12345677788899999999999999999999998 59
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013974 262 TKALITCFALCVLIYGGVAVMGF 284 (433)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~g~~gy 284 (433)
||++..+..++.++|..+.+.-.
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999765533
No 34
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.72 E-value=1.4e-14 Score=153.46 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=165.2
Q ss_pred CCCCCchHHHHHHH-HHHhhccccchhH-HHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCCHHHHHHHhh
Q 013974 42 IAHGCSFTQTIFNG-INVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES-KEGITTYPDIGEAAF 117 (433)
Q Consensus 42 ~~~~~s~~~~~~~l-~~~~iG~Gil~lP-~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~-~~~~~~y~~l~~~~~ 117 (433)
..++.++++.++.- +.+++|+|++.-| +...++|.. +++.+++.++++..+...+.+.+.+ .++.+.--.+.++.+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 45668888888888 9999999987755 778899987 8899999999999999999998875 666666667789999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHH
Q 013974 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (433)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~ 197 (433)
|+..+..+++..++.....+..|.+..++++..+++................+..++.+++.. ......+...+++.+.
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~-In~~Gvk~~ak~q~vl 232 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLG-ISFAGMEWENKAQVLF 232 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHH-HHHhhHHHHHHHHHHH
Confidence 999999999988888888889999999999988875421100000111112222222222222 2233566666666655
Q ss_pred HHHHHHHHHHhhhhccccccc-------------cCC--CCcccc-ccChhhhhhhHhhhcccccchhhHHhhccchh-h
Q 013974 198 VVATILIVLCVLFLGTIEGIG-------------FHP--TGQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (433)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (433)
++..++.++.+++.+.....+ +.. .+.+.+ ..++...++++++||.|......+..|+|+|+ +
T Consensus 233 ~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~ 312 (953)
T TIGR00930 233 LVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKA 312 (953)
T ss_pred HHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh
Confidence 444333222222222111100 000 000111 12367788888899999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 013974 261 FTKALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~g~~ 282 (433)
.||++..++.++.++|+++.+.
T Consensus 313 IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 313 IPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.72 E-value=3.5e-14 Score=141.24 Aligned_cols=228 Identities=11% Similarity=0.150 Sum_probs=155.0
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
+.+|+.+.++..+..+++++|+|++..|.. .+++|...++.+++.++........+.|.+.+.|...++...+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 356779999999999999999999999955 5666754667888889999999999999998899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
...+++++..++.......+.....+++++.+.++. ....+.++...+ .-.......+...+++.....
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~i~~~~-~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI----------PTWVSAAVFFVV-INAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999988887778888777888887665431 111222221111 111222233444444433222
Q ss_pred HHHHHH----H-Hhhh-hccccccc--cC----CCCc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHH
Q 013974 200 ATILIV----L-CVLF-LGTIEGIG--FH----PTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (433)
Q Consensus 200 ~~~~~~----~-~~~~-~~~~~~~~--~~----~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~ 265 (433)
..+... + .+.. ......+. .. ...+ +.++.++..+++...|+|.|.+.+....+|+|||+ +.||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 211111 1 1111 11101110 10 0111 11234555678889999999999999999999998 699999
Q ss_pred HHHHHHHHHHHHHH
Q 013974 266 ITCFALCVLIYGGV 279 (433)
Q Consensus 266 ~~~~~~~~~~y~~~ 279 (433)
..+.....+.|...
T Consensus 238 ~~~~~~i~~~y~~~ 251 (456)
T PRK10238 238 NQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877664
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.72 E-value=1.3e-14 Score=146.40 Aligned_cols=242 Identities=12% Similarity=0.139 Sum_probs=154.6
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccccchhHHH-HhhhcHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWAS--LVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g--~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~ 114 (433)
++.+.+|+.+.++.....+++++|+|++..|.. .+++|..| ++.+++.++........+.|.+.+.|+.+......+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~ 115 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYIL 115 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHH
Confidence 444577889999999999999999999999965 56677554 355677788888888999999888888888888899
Q ss_pred HhhchhhhHHHHHHHHHH-HHHHHHHHHHHhhhhhh-hhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhH
Q 013974 115 AAFGKYGRLLISVLLYTE-LYSYCVEFIILEGDNLT-SLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (433)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~-~~~~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~ 192 (433)
+.+||...++..+..... ..+.+..+....++++. .+++.... +. . ......+ ..+++.-....+..+...+
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~--~~--~-~~~~i~~-~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV--PE--W-AIRLVAV-LCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ch--H-HHHHHHH-HHHHHHHHHHHhhhHHHHH
Confidence 999999888888765432 22334445555566643 33332110 00 0 0111111 1112222233345555565
Q ss_pred hHHHHHHHHHHHHHHhhh---hcccccc--ccCCCCcc----ccccChhhhhhhHhhhcccccchhhHHhhccchh-hhH
Q 013974 193 LSATGVVATILIVLCVLF---LGTIEGI--GFHPTGQV----VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (433)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 262 (433)
++.......++..+..+. .....+. +.+..... .++.++..++....|+|.|.+.+..+.+|+|||+ +.|
T Consensus 190 ~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iP 269 (501)
T TIGR00911 190 VQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLP 269 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhH
Confidence 555444333322211111 1111111 11111111 1234566788889999999999999999999997 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 013974 263 KALITCFALCVLIYGGVAVMGFL 285 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~gy~ 285 (433)
|++..+..++.++|.+..+....
T Consensus 270 rAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 270 IAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998655443
No 37
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.70 E-value=1.5e-14 Score=139.82 Aligned_cols=331 Identities=16% Similarity=0.226 Sum_probs=209.5
Q ss_pred CCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhH
Q 013974 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (433)
+.|.+|....+.++++|+|++.+|....+.+-. +++..++.+.........+.+..++.|++ +..++.++.+||+.+.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 478899999999999999999999887665555 88888889999999999999998877764 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHH
Q 013974 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (433)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~ 203 (433)
+..+....+............++.++..+-... ..... .+..++..-....+..+...+++.+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t---------p~~~~-~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLPRT---------PIIVI-IILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CHHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 988887777776666666677777765432111 11121 12222222223345777777777765544333
Q ss_pred HH-HHhhhhccccccccCC--CCccccccChhhhhh-hHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHH
Q 013974 204 IV-LCVLFLGTIEGIGFHP--TGQVVKWSGMPFAIG-IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGV 279 (433)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~ 279 (433)
.. +.+.... .+..+.+. +....++.++..+.. ...++|.+.+.+....+++|+|+|.+|+...+..++.++|...
T Consensus 151 ~~~~il~~~~-~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 151 LFILVLILLA-PKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHh-cccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 21 1222111 11111111 111234555555444 7889999999999999999999999999999999999999998
Q ss_pred HhHHHHhhcccchhhh-------hhcCCCchhhH---HHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchhhHHHH
Q 013974 280 AVMGFLMFGQGTLSQI-------TLNMPPHAFAS---KVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFIL 349 (433)
Q Consensus 280 g~~gy~~fg~~~~~~i-------~~~~~~~~~~~---~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (433)
.+.....+|.+...+. .....-.+... .+.-.....+.+.......+...+.+.+.++.++.+. ..
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 305 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI----LI 305 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch----hH
Confidence 8887777775433321 11111111211 1222334456666777777788888888876664322 11
Q ss_pred HHHHHHHHHHHHHhhccc-HHHHH---HHHhHHHHHH-HHHhhHHHHHHHh
Q 013974 350 LRTALVFSSVCAAFLLPF-FSLVM---ALIGSLLSIL-AIIMPSLCFIKIL 395 (433)
Q Consensus 350 ~~~~~~~~~~~ia~~~p~-~~~v~---~l~G~~~~~~-~~ilP~l~~l~~~ 395 (433)
..... ....++. .|+ ..... +..+ ..+.. .+++|.++.+...
T Consensus 306 ~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 306 LPVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 11111 2233333 454 33321 2222 22234 7789998777654
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.70 E-value=3.7e-14 Score=140.85 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=155.6
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchh
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (433)
.+|+.|.++.....+++++|....+.+.++++.|+. .+...++.++........+.|.+.+.|+.......+++.+||+
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 567799999999999999985556668888899988 5566677777778888899999988999888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~ 200 (433)
..+++.+..++........+....++++..+++... .....++... ++-....+..+...+++....+.
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~-~~~~ln~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYI-VFIGINILGVGEAAKLEFVVTAV 153 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999988887777777888888888888765421 1111111111 11222233444444444432222
Q ss_pred HHHHHHHhhhhcc--ccccccCCC------Cc-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHH
Q 013974 201 TILIVLCVLFLGT--IEGIGFHPT------GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFA 270 (433)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~~~~~------~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~ 270 (433)
.++..+....... .+..+.... .. ...+.++..++....|+|.|++.+..+.+|+|||+ +.+|++..+..
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~ 233 (442)
T TIGR00908 154 AIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAIL 233 (442)
T ss_pred HHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHH
Confidence 2211111111111 110011000 00 11233556777788999999999999999999997 69999999999
Q ss_pred HHHHHHHHHHhH
Q 013974 271 LCVLIYGGVAVM 282 (433)
Q Consensus 271 ~~~~~y~~~g~~ 282 (433)
++.++|....+.
T Consensus 234 ~~~~~~~~~~~~ 245 (442)
T TIGR00908 234 TLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHH
Confidence 988888876443
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.69 E-value=2.5e-13 Score=136.39 Aligned_cols=229 Identities=9% Similarity=0.033 Sum_probs=154.7
Q ss_pred CCCCchHHHHHHHHHHhhccccchhH-HHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCCHHHHHHHhhch
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (433)
+|+.+.++.....+++++|+|++..| .+.+++|.. .+..+++.+.+.......+.|.+.+.|+ ...|...+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 35689999999999999999999877 666788866 5777888899999999999999988884 55898899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
...+++.+..++.............+.++..+.+.. . ...+..+. .+++-+...+..+...+++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~-~~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV---------N-PAVWIAIF-YVFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------C-HHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999888777777777777777776543321 0 11111111 112222333455555554433321
Q ss_pred HHH---HHHHH-hhh--hccccccc------cCC-CCccc-----cccChhhhhhhHhhhcccccchhhHHhhccchh-h
Q 013974 200 ATI---LIVLC-VLF--LGTIEGIG------FHP-TGQVV-----KWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (433)
Q Consensus 200 ~~~---~~~~~-~~~--~~~~~~~~------~~~-~~~~~-----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (433)
..+ +.+++ .+. .......+ +.. +.... .+.++..++....|+|.|.+.+....+|.|||+ +
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 111 11111 111 11110000 000 00111 134566788889999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 013974 261 FTKALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~g~~ 282 (433)
.||++..+...+.++|....+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986543
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.67 E-value=2.3e-13 Score=134.78 Aligned_cols=237 Identities=14% Similarity=0.162 Sum_probs=162.0
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
+|+++.....++.++|+|++..| ...+.|...++..++.+.+. ......+.|.+++.|+.+......++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47899999999999999999999 77777776666666666666 68888889988778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHH-H
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI-L 203 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~-~ 203 (433)
..+...+........+....++++...+... ..+.. .......+..++..-....+..|..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPD---LNPSP--WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG---GTCSH--HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccccc---ccccc--chheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 9999988888888888888888887776431 10000 0111111222222223333455555666554443333 1
Q ss_pred HHHHhh---hh-cccccccc----CCCCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHH
Q 013974 204 IVLCVL---FL-GTIEGIGF----HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLI 275 (433)
Q Consensus 204 ~~~~~~---~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~ 275 (433)
..+.++ .. ...++.+. ..+.....+..+..++....|+|.|.+....+.+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 211111 11 11111110 01122224455778999999999999999999999998 89999999999999999
Q ss_pred HHHHHhHHHHhhcc
Q 013974 276 YGGVAVMGFLMFGQ 289 (433)
Q Consensus 276 y~~~g~~gy~~fg~ 289 (433)
|......-....++
T Consensus 234 y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 234 YILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHTTSTH
T ss_pred Hhhhhheeeecccc
Confidence 99987665555443
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.66 E-value=1.3e-13 Score=137.17 Aligned_cols=234 Identities=14% Similarity=0.100 Sum_probs=152.0
Q ss_pred cCCCCCchHHHHHHHHHHhhccccchhHHHH-hhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhh
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~--g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (433)
+.+|+.+.++.....+++++|+|++..|... +..|.. .+..+++.+++.......+.|.+.+.|+....-...++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 3567799999999999999999999999764 556643 5677888888999999999999888887766666788999
Q ss_pred chhhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHH
Q 013974 118 GKYGRLLISVLLYT-ELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (433)
Q Consensus 118 G~~~~~~~~~~~~~-~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~ 196 (433)
||...++..+..+. ........+....++++....+. .. . ..... .+..+..+-....+..+...+++..
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~~--~-~~~~~-~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-----DP--L-LGKFI-AAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ch--H-HHHHH-HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99998888886443 23334455666667776654332 00 0 01111 1111122222333455555555544
Q ss_pred HHHHHHHHHHHhhhhc--cccccccCCCC-----ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHH
Q 013974 197 GVVATILIVLCVLFLG--TIEGIGFHPTG-----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (433)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~ 268 (433)
.....+...+.++..+ ...+.+++... ...++.++..++....|+|.|.+....+.+|+|||+ +.||++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 4333222111111111 11222221111 111234566778889999999999999999999998 689999999
Q ss_pred HHHHHHHHHHHHhHH
Q 013974 269 FALCVLIYGGVAVMG 283 (433)
Q Consensus 269 ~~~~~~~y~~~g~~g 283 (433)
..++.++|.......
T Consensus 236 ~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 236 CLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876543
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.65 E-value=5.5e-13 Score=132.31 Aligned_cols=329 Identities=14% Similarity=0.159 Sum_probs=187.4
Q ss_pred HHHHhhccccchhHH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHHHHHHHHHHH
Q 013974 55 GINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTEL 133 (433)
Q Consensus 55 l~~~~iG~Gil~lP~-~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 133 (433)
.+++++|+|++..|. +.+++|...++.+++.+++....+..+.|.+.+.|+.++..+.+++.+||+..+++.+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 467899999999995 6788887688899999999999999999999889999999999999999999999999888766
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHHHhhh---
Q 013974 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLF--- 210 (433)
Q Consensus 134 ~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~--- 210 (433)
...........+..+....+.. ....+.++. ++.+-+......|..+.++.......+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGI----------PIWLFSLVI-TLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccC----------cHHHHHHHH-HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554555444433221 111221211 11122222334444444444332222211111111
Q ss_pred ---hcccccc---cc----CCCC-ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHH
Q 013974 211 ---LGTIEGI---GF----HPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGG 278 (433)
Q Consensus 211 ---~~~~~~~---~~----~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~ 278 (433)
.+..+.. +. +... .+.++.++..++....|+|.|.+.+....+|+|||+ +.+|++..+...+.++|..
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 1111000 00 0000 112345677889999999999999999999999998 5999999999999999998
Q ss_pred HHhHHHHhhcccch-----h---hhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhh-----cCCC----CC
Q 013974 279 VAVMGFLMFGQGTL-----S---QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL-----LPAG----IS 341 (433)
Q Consensus 279 ~g~~gy~~fg~~~~-----~---~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~-----~~~~----~~ 341 (433)
..+........+.. + ........ .....+.....+++.+.+....+....|.+... +|+. ++
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 65553322221110 1 11222221 223334444444555555554444444444332 2211 11
Q ss_pred chhh-HHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHhhHHHHHHHhc
Q 013974 342 NNYW-CFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILAIIMPSLCFIKILG 396 (433)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~~ia~~~p--~~~~v~~l~G~~~~~~~~ilP~l~~l~~~~ 396 (433)
++.+ .-.....++..+..+.....| .++.++++.+.... +.|+++++.+++.||
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l-i~y~~~~~a~i~lr~ 367 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIAL-LVYLVIAVSQLRMRK 367 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1222 222222222222222222223 35555555444332 377778888887765
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.59 E-value=4.5e-12 Score=122.38 Aligned_cols=345 Identities=11% Similarity=0.129 Sum_probs=226.4
Q ss_pred cCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
+.+|+...++..++-+++.||+| .++...+.+++|.. .++..++++.+.+..+..+.|++...|...+|...+.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 57788999999999999999999 55688999999999 78999999999999999999999888977889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhh--hccccCchhhH----
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT--IWLRDLRVISY---- 192 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl--~~~~~~~~l~~---- 192 (433)
+-.++.+.|..++....++...+...+..++.+++... ....|..+..++++.+ .-.|...+.-+
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v---------~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV---------PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC---------ChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999888888899988888888875421 1223333333333333 33343332222
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccc------cC-CCCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHH
Q 013974 193 LSATGVVATILIVLCVLFLGTIEGIG------FH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (433)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~ 264 (433)
+-.+.++..+++. +++..+..+++. ++ +.....+++++...+-...|||.|.+.+--...|-+||+ ..||+
T Consensus 192 iKV~~ii~Fii~g-ii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkA 270 (541)
T COG0833 192 IKVLTIIGFIILG-IIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKA 270 (541)
T ss_pred HHHHHHHHHHHHH-HHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHH
Confidence 2222222111112 222223333211 11 112234567888888999999999999999999999998 58999
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHh-hcccc----------hhhhhhcC--CCchhhHHHHHHHHHHHhhhhccccccchHH
Q 013974 265 LITCFALCVLIYGGVA-VMGFLM-FGQGT----------LSQITLNM--PPHAFASKVAVWTTVINPFTKYALLMNPLAR 330 (433)
Q Consensus 265 ~~~~~~~~~~~y~~~g-~~gy~~-fg~~~----------~~~i~~~~--~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~ 330 (433)
+.-...-..++|+..- +.|.+. +.|.. .++....+ .+-.....+.+..++.+++++-...++...|
T Consensus 271 ik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR 350 (541)
T COG0833 271 IKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSR 350 (541)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999999999988733 222222 33311 11111111 1122456777888888888888888888888
Q ss_pred HHHhhcCCC---------CCchh-hHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHhhHHHHHHHhc
Q 013974 331 SIEELLPAG---------ISNNY-WCFILLRTALVFSSVCAAFLLP--FFSLVMALIGSLLSILAIIMPSLCFIKILG 396 (433)
Q Consensus 331 ~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~ia~~~p--~~~~v~~l~G~~~~~~~~ilP~l~~l~~~~ 396 (433)
.+..+-.+. +++.+ +..+.++.++.+++++-+..-. -+..++++.|... .++++-=++.|++-||
T Consensus 351 ~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~-~i~W~~I~~shirFR~ 427 (541)
T COG0833 351 MLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG-FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 777654322 22333 3344445554455544444422 2455555544433 3355566777777653
No 44
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=7e-13 Score=132.03 Aligned_cols=297 Identities=9% Similarity=0.039 Sum_probs=198.5
Q ss_pred ccCCCCCchHHHHHHHHHHhhccccch-hHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CCHHHHHHHh
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAA 116 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~-lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~-~~y~~l~~~~ 116 (433)
.+.+|+.+.++..+..+++++|+|++- ...+.++.|.. -++..++.+.....++..+.|.+.+.|.. .++...+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 467788999999999999999999665 56788888888 77888899999999999999999889985 8888889999
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CCCCCCCCc--ccCchhHHHHHHHHHHhhhhccccCchhhH
Q 013974 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP--GASLDWPGF--QLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (433)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~--~~~~~~~~~--~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~ 192 (433)
.|+.+++++.|-.++.....+.+.....+.+++.+.. ......... ...-.-.+..+..+.+++....-..++...
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~ 185 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLA 185 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHH
Confidence 9999999999999999999999999999999998761 000000000 011111122222222232222223343332
Q ss_pred hHH-HHHHHHHHHHHHhhhhcccccc-ccC------CCC-c-cccccChhhhhhhHhhhcccccchhhHHhhccchh-hh
Q 013974 193 LSA-TGVVATILIVLCVLFLGTIEGI-GFH------PTG-Q-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (433)
Q Consensus 193 ~s~-~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~-~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 261 (433)
... +.++..+++.+++...+...+. ++. .+. . ..+++++...+....|+|.|.+.+....+|-|||+ +.
T Consensus 186 ~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~I 265 (554)
T KOG1286|consen 186 FNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAI 265 (554)
T ss_pred HHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccc
Confidence 222 2222222222222222222221 222 111 1 22378889999999999999999999999999998 68
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh--hccc-chhhh--------hhcCCCchhhHHHHHHHHHHHhhhhccccccchHH
Q 013974 262 TKALITCFALCVLIYGGVAVMGFLM--FGQG-TLSQI--------TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLAR 330 (433)
Q Consensus 262 ~~~~~~~~~~~~~~y~~~g~~gy~~--fg~~-~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~ 330 (433)
|+++..+...+.++|....+.--+. +.+. ..++. ..+..+-.....+.+...++++.++....+++.-|
T Consensus 266 P~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR 345 (554)
T KOG1286|consen 266 PKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSR 345 (554)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHH
Confidence 9999999999999999976543332 2221 11111 12222222333477777888888888888888888
Q ss_pred HHHhhc
Q 013974 331 SIEELL 336 (433)
Q Consensus 331 ~~~~~~ 336 (433)
.+..+-
T Consensus 346 ~l~amA 351 (554)
T KOG1286|consen 346 VLYALA 351 (554)
T ss_pred HHHHHH
Confidence 776653
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.50 E-value=1.5e-10 Score=116.00 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=147.5
Q ss_pred ccCCCCCchHHHHHHHHHHh-hccccchhH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhh
Q 013974 40 LPIAHGCSFTQTIFNGINVM-AGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~-iG~Gil~lP-~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (433)
.+.+|+.|.++......+.+ +|+|++++| .+..++|...+..+++.++........+.|.+.+.|..+..-..+++.+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 34677799999999888875 899999988 5556677656677788888888999999999988999888888899999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC-----CCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhH
Q 013974 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGA-----SLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISY 192 (433)
Q Consensus 118 G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~ 192 (433)
||...+++.+...+...............++..+.+.. .++........+.....+..+++.-+......|...+
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999988877654444444444444443332110 0011000000111111111222222223334555555
Q ss_pred hHHHHHHHHHHHHHHhhhh---ccccccc--cCCC--Cccccc-cChhhhhhhHhhhcccccchhhHHhhccchh-hhHH
Q 013974 193 LSATGVVATILIVLCVLFL---GTIEGIG--FHPT--GQVVKW-SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (433)
Q Consensus 193 ~s~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 263 (433)
++.......+...+.++.. ....+.. ++.. ++..++ ..+..+.....|+|.|.+.+..+.+|+|||+ +.||
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr 248 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhH
Confidence 5544433222211111111 1111110 0010 011111 2233455567899999999999999999998 6899
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 013974 264 ALITCFALCVLIYGGVAVMGF 284 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy 284 (433)
++..+..++.++|...-+...
T Consensus 249 ai~~s~~i~~~~~~~~~~~~~ 269 (475)
T TIGR03428 249 TILTALSVSALGGGLMILGAL 269 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876666544433
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.50 E-value=6.8e-11 Score=118.52 Aligned_cols=246 Identities=15% Similarity=0.181 Sum_probs=164.5
Q ss_pred ccCCCCCchHH-HHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 40 LPIAHGCSFTQ-TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 40 ~~~~~~~s~~~-~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
+..+++.+.++ ......+.++|.|++.+|......+....+.+++.+.........+.|.+++.|+.+.+....++.+|
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 34455677777 89999999999999999988766652233336666677777788888988878888888888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCc-hhHHHHHHHHHHhhhhccccCchhhHhHHHH
Q 013974 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRVISYLSATG 197 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~ 197 (433)
|+..+++.+...+.............++.+..+++... ...... ......+.....+-+...+..+...++....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 98889999999998888888888888888888777521 000000 1111111222222233344555555555544
Q ss_pred HHHHHHHHHHhhhhccc--cc--cccCCCC--ccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHH
Q 013974 198 VVATILIVLCVLFLGTI--EG--IGFHPTG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFA 270 (433)
Q Consensus 198 ~~~~~~~~~~~~~~~~~--~~--~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~ 270 (433)
.+..++..+........ +. .+..... ....+..+...+....++|.|.+.+.+..+|+|||+ +.+|++..+..
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~ 243 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLL 243 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 43333322222222111 11 1111100 112233567788889999999999999999999996 68999999999
Q ss_pred HHHHHHHHHHhHHHHhhcc
Q 013974 271 LCVLIYGGVAVMGFLMFGQ 289 (433)
Q Consensus 271 ~~~~~y~~~g~~gy~~fg~ 289 (433)
.+.++|...........+.
T Consensus 244 ~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 244 IVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhCccH
Confidence 9999999987776655543
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.46 E-value=3e-10 Score=114.18 Aligned_cols=237 Identities=7% Similarity=0.010 Sum_probs=136.3
Q ss_pred cCCCCCchHHHHHHHHHHhhc--cccch-hHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013974 41 PIAHGCSFTQTIFNGINVMAG--VGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG--~Gil~-lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 116 (433)
+.+|+.+.++......+. +| +|+.. .+.+.++.|.. .+..+++.+++....+..+.|.+.+.|+..+....+++.
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 356678888888887774 44 56544 44677788887 677888999999999999999998899988888888999
Q ss_pred hch----hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCc-hhHHHHHHHHHHhhhhccccCchhh
Q 013974 117 FGK----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRVIS 191 (433)
Q Consensus 117 ~G~----~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~pl~~~~~~~~l~ 191 (433)
+|+ ...+++.|...+.....+.+.....++++.........+ ..+..+. ......+.....+-+......|...
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 874 556777777776666666655555666665433211100 0000000 1111111111112222223334444
Q ss_pred HhHHHHHHHHHHHHH--Hhhhhcc-ccc-cc----cCC-CCccccc----cChhhhhhhHhhhcccccchhhHHhhccch
Q 013974 192 YLSATGVVATILIVL--CVLFLGT-IEG-IG----FHP-TGQVVKW----SGMPFAIGIYGFCYSGHSVFPNIYQSMADK 258 (433)
Q Consensus 192 ~~s~~~~~~~~~~~~--~~~~~~~-~~~-~~----~~~-~~~~~~~----~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 258 (433)
+++....+..++..+ .+..... ..+ .+ .+. .+...++ ..+..++....|+|.|.+......+|+|||
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP 246 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENP 246 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCCh
Confidence 444333222111111 1111111 111 00 000 0000011 123344555779999999999999999999
Q ss_pred h-hhHHHHHHHHHHHHHHHHHH
Q 013974 259 T-KFTKALITCFALCVLIYGGV 279 (433)
Q Consensus 259 ~-~~~~~~~~~~~~~~~~y~~~ 279 (433)
+ +.||++..+..+..+++.+.
T Consensus 247 ~r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 247 EVVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH
Confidence 8 68999999888776654443
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.41 E-value=2.5e-09 Score=107.80 Aligned_cols=239 Identities=15% Similarity=0.165 Sum_probs=137.9
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCC-CCCHHHHHHHhhchh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEG-ITTYPDIGEAAFGKY 120 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~-~~s~~~l~~~~~~~~~-~~~y~~l~~~~~G~~ 120 (433)
+++.|+++.....+++++|.+ .+|.++++.|..+++..++.+.+. ......+.|.+.+.|+ ++.--...++.+||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 456999999999999999976 679888888887777777666554 4566788999888886 577778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcCCCCC-CCCCcccCchhHHHHHHHH--HHhhhhccccCchhhHhHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIIL-EGDNLTSLFPGASL-DWPGFQLDSTHLFGILTAL--IVLPTIWLRDLRVISYLSAT 196 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~--~~~pl~~~~~~~~l~~~s~~ 196 (433)
++++..+..+............. ........+..... ++............++..+ .++-....+..+..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 88876655433322211111000 00000111111100 0000001111111111111 12333445566766666654
Q ss_pred HHHHHHH----HHHHhhhhcccccc----ccCC----CCccccc---cChhhhhhhHhhhcccccchhhHHhhccchh-h
Q 013974 197 GVVATIL----IVLCVLFLGTIEGI----GFHP----TGQVVKW---SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (433)
Q Consensus 197 ~~~~~~~----~~~~~~~~~~~~~~----~~~~----~~~~~~~---~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 260 (433)
+....+. ..+.........+. +.+. +.+..++ .++..++....|+|.|.+.+....+|+|||+ +
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 3322111 11111111111111 1100 0000122 2355667778999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 013974 261 FTKALITCFALCVLIYGGVAVMG 283 (433)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~g~~g 283 (433)
.||++..+...+.++|.+..+..
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865443
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.41 E-value=1.7e-09 Score=108.42 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhH
Q 013974 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~-~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (433)
+++.++..+....++++ +-.+|.+ ++.|...++.+++.+.+.. .......|.+.+.|+.+.....+++.+|+++++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 46777777777777766 4456755 5788777777777666554 577888999888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHH--HHhhhhccccCchhhHhHHHH-HHH
Q 013974 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL--IVLPTIWLRDLRVISYLSATG-VVA 200 (433)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~pl~~~~~~~~l~~~s~~~-~~~ 200 (433)
+..+..++........-....+..+.-..+..... ... .........+..+ ..+-....+..|..++++... .+.
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-ccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 98887766542211111111111111111110000 000 0111221111111 122223445566555555432 111
Q ss_pred HHH---HHHHh-hhhccccccc-cCCC-----CccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHH
Q 013974 201 TIL---IVLCV-LFLGTIEGIG-FHPT-----GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (433)
Q Consensus 201 ~~~---~~~~~-~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~ 269 (433)
.++ ..++. +......+.. .+.+ +...++..+..+ ....|+|.|.+.+....+|+|||+ +.+|++..+.
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 111 11111 1111111111 1100 001122333222 245789999999999999999998 6999999999
Q ss_pred HHHHHHHHHHHhHHHH
Q 013974 270 ALCVLIYGGVAVMGFL 285 (433)
Q Consensus 270 ~~~~~~y~~~g~~gy~ 285 (433)
.++.++|....+.-..
T Consensus 236 ~~~~~~y~l~~~~~~~ 251 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAF 251 (474)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999886554433
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.39 E-value=1.8e-10 Score=109.29 Aligned_cols=286 Identities=17% Similarity=0.204 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
++|..|....+..+++|+|++.+|....+.+--+++..++.+.......+.+.+..++.|+ ++..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHHH
Confidence 3788999999999999999999998875443025566666666666777777777654455 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHH
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (433)
......++.+..........+|.++..+-... .. .......++..--...+.++.+.+.+.+-....++.
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T---------P~-~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~ 149 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPET---------PI-WVIILLFLLVAAYAARKGIEVIARVAEILFPIFLIL 149 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC---------CH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888887543211 11 222222222222344567888887665544333332
Q ss_pred HHHhhhhccccccccCC--CCccccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhH
Q 013974 205 VLCVLFLGTIEGIGFHP--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 205 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~ 282 (433)
.+. +.....++.+++. +....+++++..+.....+.|.+.....-+...+|+|+|.+|....+...+.++|...-+.
T Consensus 150 ~~~-i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 228 (320)
T PF03845_consen 150 LLL-ILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFI 228 (320)
T ss_pred HHH-HHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2233334434332 2223567788888888899999999999999999999999999999999999999988888
Q ss_pred HHHhhcccchhhhh---------hcCCC-chhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCc
Q 013974 283 GFLMFGQGTLSQIT---------LNMPP-HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (433)
Q Consensus 283 gy~~fg~~~~~~i~---------~~~~~-~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 342 (433)
....||.+..++.. .+.++ =+..-...-.......+.......+-..+.+.+.++.++.+
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 88888854433321 11120 01111122233445666677777788888888888776533
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.31 E-value=1e-08 Score=103.34 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=126.2
Q ss_pred CCCCchHHHHHHHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCCHHHHHHHhhchh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVV-CCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~-~~~s~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (433)
+++.+.++.++..+.++++ +..+| .+++.|+-.+..+++.+++ .......++|.+...| +++.....+++.+|++
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 3458889988888877764 56888 4677886666555555554 3557788889876554 5666677799999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH-HHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
++++..+..++................+...+.. +....+..... ..+..+..+-+...+..+...+++..+.+
T Consensus 80 ~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~ 154 (507)
T TIGR00910 80 FGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF-----PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFF 154 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888766665544322222111111111111111 00011111111 11111222223344455555555544322
Q ss_pred H-HHHHHHHh---hhhcccccccc----CCCCcccccc--ChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHH
Q 013974 200 A-TILIVLCV---LFLGTIEGIGF----HPTGQVVKWS--GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (433)
Q Consensus 200 ~-~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~ 268 (433)
. +++..+++ .......+.+. +......++. +....+....|+|.|.+......+|+|||+ +.||++..+
T Consensus 155 ~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~ 234 (507)
T TIGR00910 155 AGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHH
Confidence 1 11111111 11111111111 1111112222 222344456889999999999999999998 699999999
Q ss_pred HHHHHHHHHHHHh
Q 013974 269 FALCVLIYGGVAV 281 (433)
Q Consensus 269 ~~~~~~~y~~~g~ 281 (433)
.+++.++|....+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876443
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.19 E-value=1.6e-10 Score=116.13 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=148.1
Q ss_pred HHHHHhhccccch-hHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHHHHHHHHH
Q 013974 54 NGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYT 131 (433)
Q Consensus 54 ~l~~~~iG~Gil~-lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 131 (433)
..+++++|+|++. .+.+..+.|.. .++.+++.+++....+..+.|.+++.|+..++-+.+++.+|+..+..+++..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 3467889999555 66888999997 788899999999999999999999899999999999999999999999988777
Q ss_pred HHHHHHHHHHHHhhhhhhhh--cCCCCCCCCCcccCchhHHHHHHHHHHhh--hhccccCchhhHh-HHHHHHHHHHHHH
Q 013974 132 ELYSYCVEFIILEGDNLTSL--FPGASLDWPGFQLDSTHLFGILTALIVLP--TIWLRDLRVISYL-SATGVVATILIVL 206 (433)
Q Consensus 132 ~~~~~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--l~~~~~~~~l~~~-s~~~~~~~~~~~~ 206 (433)
.............+..++.. .+... ....... .+..+..+++.. +...|...+...+ ..+-++..+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLP----STWVWGI-LIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHhhhhhhhhhhcccccccccc----ccccccc-hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhh
Confidence 77666666666666655554 22211 0011100 111222222222 2222222222222 1111111111111
Q ss_pred HhhhhccccccccCC------------------CCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHH
Q 013974 207 CVLFLGTIEGIGFHP------------------TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALIT 267 (433)
Q Consensus 207 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~ 267 (433)
..++.....+.+.+. ++...++.++..++...+++|.|.+.+....+|.|||+ +.||+...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~ 239 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLL 239 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhh
Confidence 110111111111000 01122367888999999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcc
Q 013974 268 CFALCVLIYGGVAVMGFLMFGQ 289 (433)
Q Consensus 268 ~~~~~~~~y~~~g~~gy~~fg~ 289 (433)
+.....++|.......-...+.
T Consensus 240 ~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 240 SVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhhhhhhhhhhhhhhcccccCc
Confidence 9999999999877655554443
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.08 E-value=1.5e-07 Score=91.39 Aligned_cols=250 Identities=11% Similarity=0.113 Sum_probs=135.1
Q ss_pred hcccCCccCCCCCchHHH---HHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCH
Q 013974 34 KQLTGELPIAHGCSFTQT---IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTY 109 (433)
Q Consensus 34 ~~~~~~~~~~~~~s~~~~---~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y 109 (433)
++..-+.+.+|+-|+++. .+.+++..-|.. -++.+.+..+|.. -.-.+++.+.....++..++|.+...|..++.
T Consensus 38 ~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgL 116 (550)
T KOG1289|consen 38 AELGYKQELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGL 116 (550)
T ss_pred HHcCCchhhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcH
Confidence 333345556666665544 444444444432 2466666667766 44557777888888999999988878866655
Q ss_pred HHHHHHhhc----hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc-
Q 013974 110 PDIGEAAFG----KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL- 184 (433)
Q Consensus 110 ~~l~~~~~G----~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~- 184 (433)
.-=+.+.-+ |...|++++...+.+.....+-.-..++.+.....-..+ ++...+.+.+.+ ...+.+-++++
T Consensus 117 y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np---~y~~~~~~~~~v-~~ai~~v~~lln 192 (550)
T KOG1289|consen 117 YFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNP---NYEPTNYHQFGV-FEAILFVHGLLN 192 (550)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCC---CCcccceEeehH-HHHHHHHHHHHh
Confidence 443444434 444566666665555444444444455555444333222 222222222222 11112222222
Q ss_pred -ccCchhhHhHHHHHHHHHHHHHHhhhh---ccccccccCC-------CCcccccc----ChhhhhhhHhhhcccccchh
Q 013974 185 -RDLRVISYLSATGVVATILIVLCVLFL---GTIEGIGFHP-------TGQVVKWS----GMPFAIGIYGFCYSGHSVFP 249 (433)
Q Consensus 185 -~~~~~l~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~~faf~~~~~i~ 249 (433)
-.-+.+.+++.+++...++..+..++. ...+..+++. .....+|+ .+..++-...+++.|.+.-.
T Consensus 193 ~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~ 272 (550)
T KOG1289|consen 193 SLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAA 272 (550)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchH
Confidence 223455666665554444333322221 1122111221 11223443 23334555788999999999
Q ss_pred hHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q 013974 250 NIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFG 288 (433)
Q Consensus 250 ~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fg 288 (433)
++.+|.|+++ +.||++..+..+..++=..+-+.-..+-+
T Consensus 273 H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~ 312 (550)
T KOG1289|consen 273 HMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIP 312 (550)
T ss_pred HHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998 68999888888888775554444333444
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.97 E-value=2e-08 Score=84.39 Aligned_cols=212 Identities=17% Similarity=0.241 Sum_probs=139.1
Q ss_pred chHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh------------h-C---------
Q 013974 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE------------S-K--------- 103 (433)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~------------~-~--------- 103 (433)
|-.-......|-++|+|.|++|.+|+.+||+ ++.++.+.+.+++.+....++... + .
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 3345567778999999999999999999999 999999999999999888776431 0 0
Q ss_pred ----------------------------------CCCCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013974 104 ----------------------------------EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLT 149 (433)
Q Consensus 104 ----------------------------------~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~ 149 (433)
.+....+|++...|.|.+-.+.-+.++++++|-...|...+-....
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 0012556888888999999899999999999999999887766665
Q ss_pred hhcCCC-CCCCCC-------------cc-----cC-chhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHHHhh
Q 013974 150 SLFPGA-SLDWPG-------------FQ-----LD-STHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (433)
Q Consensus 150 ~~~~~~-~~~~~~-------------~~-----~~-~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~ 209 (433)
++.... ..+..+ |. .+ .+.++.++..++.+|+.+. +++.-++++++....-..-.+..+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchh
Confidence 544321 110000 10 11 1345556666777787766 555556666554333222221111
Q ss_pred hhccc--cccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchh
Q 013974 210 FLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT 259 (433)
Q Consensus 210 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 259 (433)
..+.+ ........++...+-++-..++...|+|.+|.+.|.....++.+.
T Consensus 252 ~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 252 SLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 11111 111111223334456777889999999999999999988886543
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.83 E-value=5.3e-06 Score=75.71 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhhccccchhHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 49 TQTIFNGINVMAGVGLLSTPYT----VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~~----~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+..+..+++++|+|. +...- |..-|+-|....++++.+-..++..+.+.. ++-+.++|.|..++.+||+...+
T Consensus 6 ~~~~f~~ig~~vGAGf-AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig-~~f~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 6 MRWAFAFIGTVVGAGF-ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIG-KKFNATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHhhcccc-cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHhhHHHHHH
Confidence 4556777889999995 44433 345566688888889999999999998886 47778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHH
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~ 204 (433)
.+....+.++++++.-....++.+.+.+.- ..+.-.++....+..+.++++.+.+-.+..+-.-.....
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~l-----------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL-----------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCc-----------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 999999999999999888888888876543 111222344444444556666665554443322111111
Q ss_pred HHHhhhhccc--cccccCC-CCccccccChhhhhhhHhhhcc-cccchhhHHhhccchhhhHHHHHHHHHHHHHH
Q 013974 205 VLCVLFLGTI--EGIGFHP-TGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLI 275 (433)
Q Consensus 205 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~ 275 (433)
...+...... .+..+.. .....+|+. .+.+-..+... ++..+.++-+||+++++..+....+-.+..++
T Consensus 153 l~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl 225 (349)
T COG3949 153 LVLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVL 225 (349)
T ss_pred HHHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHH
Confidence 1111111111 1111111 111123321 12222222222 45556677799999987666555444444433
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.59 E-value=9.6e-05 Score=73.45 Aligned_cols=232 Identities=15% Similarity=0.099 Sum_probs=120.8
Q ss_pred CCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCC--CcccC-chhHHHHHHHHHHhhhhc
Q 013974 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--GFQLD-STHLFGILTALIVLPTIW 183 (433)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~pl~~ 183 (433)
-++..+.|..||++|..+..++..+...+-........++.+...++....... +.+.+ ......++...+..++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 466678999999999999999888888888888888888777665554321110 00000 111222333444444433
Q ss_pred cccCchhhHhHHHHHHHHHHHHHHhhhhccc-cc-cccC-CC---CccccccChhhhhhhHh-hhcccccchhhHHhhcc
Q 013974 184 LRDLRVISYLSATGVVATILIVLCVLFLGTI-EG-IGFH-PT---GQVVKWSGMPFAIGIYG-FCYSGHSVFPNIYQSMA 256 (433)
Q Consensus 184 ~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~---~~~~~~~~~~~~~~~~~-faf~~~~~i~~i~~~m~ 256 (433)
....+........+....+......++.... .+ .+.. .. ........+..++...+ +.-....+.+...+.+|
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~ 235 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGK 235 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcC
Confidence 4333333333333333222222222211111 10 1111 10 11112233444444422 23345567889999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHHh----hcccchhh--hhhcCCCchhhHHHHH------HHHHHHh-hhhccc
Q 013974 257 DKTKFTKALITCFALCVLIYGGVAVMGFLM----FGQGTLSQ--ITLNMPPHAFASKVAV------WTTVINP-FTKYAL 323 (433)
Q Consensus 257 ~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~----fg~~~~~~--i~~~~~~~~~~~~~~~------~~~~~~~-~~s~p~ 323 (433)
+|++-.+....+..........+|..+-.. +|+...+. ....+...... .... ++.++.. .+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~~~~~f~~~~~vl~~~~t~~~~ 314 (442)
T TIGR00800 236 SKKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYA-VGARAVFGFGFCFVVAQLSTNISA 314 (442)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchh-hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 988766667777777777777777777665 66543333 33333322111 1111 1222222 235556
Q ss_pred cccchHHHHHhhcCCC
Q 013974 324 LMNPLARSIEELLPAG 339 (433)
Q Consensus 324 ~~~~~~~~~~~~~~~~ 339 (433)
..++....+.+.+++.
T Consensus 315 N~ys~~l~l~~l~~~~ 330 (442)
T TIGR00800 315 NSYSAGLDIAALLPKY 330 (442)
T ss_pred hccchHHHHHHhCcCc
Confidence 6778777888887764
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.56 E-value=0.00022 Score=69.11 Aligned_cols=252 Identities=15% Similarity=0.100 Sum_probs=148.8
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhh--hhccccCc
Q 013974 111 DIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP--TIWLRDLR 188 (433)
Q Consensus 111 ~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--l~~~~~~~ 188 (433)
.+.|+.||++|..+..+.+.+.+.|-.....+..++...+. +.. +-..+.++..+++.- +...|-++
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~----------~~~~~ili~g~l~~l~~ifG~r~l~ 153 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGL----------PVWAGILIIGVLMTLVTIFGYRALH 153 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCC----------cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45889999999999999999999999888888888762222 111 122333333333333 33446666
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhhccccccccCCCCccccccChhhhhhhHhhhcc-cccchhhHHhhccchh--hhHHHH
Q 013974 189 VISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKT--KFTKAL 265 (433)
Q Consensus 189 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~--~~~~~~ 265 (433)
.+.+++...+...+...+..... ..+..+........++.++..+++...-.+. .-+......+.+|+|+ |.-...
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~-~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFR-SKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 66666665443333222221111 1111121222223455666666655443333 4456677778888887 666677
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcccc-hhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchh
Q 013974 266 ITCFALCVLIYGGVAVMGFLMFGQGT-LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (433)
Q Consensus 266 ~~~~~~~~~~y~~~g~~gy~~fg~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~ 344 (433)
..+......+-.+.|.....+-|+.. ..+....+.. ....+.+...++..++--..+++..-.+.+..++. ++
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l---~k 306 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL---SK 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh---hh
Confidence 77788888888888888888887665 3344444442 34445566667777888888888877777776553 22
Q ss_pred hHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHhHHHHHH
Q 013974 345 WCFILLRTALVFSSVCAAFLL----PFFSLVMALIGSLLSIL 382 (433)
Q Consensus 345 ~~~~~~~~~~~~~~~~ia~~~----p~~~~v~~l~G~~~~~~ 382 (433)
..+.+...+. ..+++|... .+++.++.+.|+.....
T Consensus 307 ~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~ 346 (442)
T COG1457 307 VTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPW 346 (442)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 333444444 46777777777766666
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.51 E-value=0.0018 Score=65.28 Aligned_cols=146 Identities=12% Similarity=-0.028 Sum_probs=86.4
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHH-HHH---HHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWAS-LVV---LLLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g-~~~---~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~ 114 (433)
-...|+.+++...+.+..+.+|++ .++.|....+.|+.. ... .........+-+..+.+.. |+.+..|..|+.+
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~l~ 115 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILA-RKYNAVTLNDMLR 115 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHH
Confidence 344677888888999988888876 777887666677541 111 1111111122333344444 3667899999999
Q ss_pred Hhhchhh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHh
Q 013974 115 AAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (433)
Q Consensus 115 ~~~G~~~-~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~ 193 (433)
+-||++. +.+..+...+..+......+...+..++.+++- +.....++..++++--.....++...+.
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-----------SYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999754 555555555566666677777777788776542 1122223333333444555566655554
Q ss_pred HHHH
Q 013974 194 SATG 197 (433)
Q Consensus 194 s~~~ 197 (433)
..+-
T Consensus 185 D~iQ 188 (483)
T PRK09442 185 DALQ 188 (483)
T ss_pred HHHH
Confidence 4444
No 59
>PRK12488 acetate permease; Provisional
Probab=98.47 E-value=0.0018 Score=66.18 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=94.7
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
--..|+.+++...+.+..+.++++ .++.|....+.|+.+....+............+.+-.+ ..+..|..|..++=||
T Consensus 63 ~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr-~~g~~T~~d~l~~Rf~ 141 (549)
T PRK12488 63 YTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLR-NLGKYTFADVVSYRLA 141 (549)
T ss_pred eeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH-HCCCcchHHHHHHHcC
Confidence 345677999999999999988888 78899888788876433222221111122234444433 4566899999988887
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHH
Q 013974 119 -KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (433)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~ 197 (433)
|+.|.+..+...+.........+...+..++.+++- ....-.++..+++.--.....++...+...+-
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-----------SYLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 568888888777777777788888888888777542 11222333334444445555666666655554
Q ss_pred HH
Q 013974 198 VV 199 (433)
Q Consensus 198 ~~ 199 (433)
.+
T Consensus 211 ~~ 212 (549)
T PRK12488 211 AV 212 (549)
T ss_pred HH
Confidence 43
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.44 E-value=0.00037 Score=68.55 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=75.3
Q ss_pred CCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhh
Q 013974 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (433)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+..+.........+.+-.+ +.+..|..|+.++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLR-RSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHH-HTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhc-ccchhhhhhhhhhhcCCch
Confidence 456888999999999999987 77899888888876433334434444444555566554 6678999999999999988
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 122 --RLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
+.+..+..++.........+...+..++.+++
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g 117 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG 117 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc
Confidence 66666666666777778888888888888765
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.44 E-value=0.00089 Score=65.88 Aligned_cols=145 Identities=17% Similarity=0.067 Sum_probs=93.7
Q ss_pred CCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch-h
Q 013974 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK-Y 120 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~-~ 120 (433)
.|+.+++...+.+..+.+|++ .++.|....+.|+.+....+..........+...+..+ ..+..|..|+.++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFI-NNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCchhHHHHHHhCchH
Confidence 356788888888888888877 77899877777865433333333333344455555543 56689999999999998 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHH
Q 013974 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (433)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~ 199 (433)
.+.+..+...+..+......+...+..++.+++- +.....++..+++.--.....++...+...+-.+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----------~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----------DLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 6777777777777788888888888888887642 1122233333333334445556655555554433
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.43 E-value=0.00099 Score=64.86 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=137.0
Q ss_pred CCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc
Q 013974 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (433)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~ 186 (433)
.++.-+.|..||++|..+..+...+...+--.......++.++.+.+..... +......++..++..+.... .
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~-G 130 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLLS-G 130 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHHH-H
Confidence 5788899999999999999988888888888888888888888776542111 11112223333333333332 3
Q ss_pred CchhhHhHHHHHHHHHHHHHHhhhhccc-cccccCCCCccccccChhhhhhhHhhh-cccccchhhHHhhccchhhhHHH
Q 013974 187 LRVISYLSATGVVATILIVLCVLFLGTI-EGIGFHPTGQVVKWSGMPFAIGIYGFC-YSGHSVFPNIYQSMADKTKFTKA 264 (433)
Q Consensus 187 ~~~l~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~ 264 (433)
.+.++++...+........+...+.... .+.+...+. ..+ ..+..++....-. -......+...+..|+|+|.-+.
T Consensus 131 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~ 208 (386)
T TIGR02358 131 PLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLG 208 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehH
Confidence 4444555554444433333222221111 111100111 111 2233333222211 12334578888888888887778
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchh
Q 013974 265 LITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNY 344 (433)
Q Consensus 265 ~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~ 344 (433)
...+..+...+...+|.....+.++....++..... ......+..+++..++.....++.-..+.+.+++.+ +
T Consensus 209 ~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~ 281 (386)
T TIGR02358 209 TVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK---V 281 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 888888888888888887777666543223332221 112233344555566666777777777777775432 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHhHHHHHH
Q 013974 345 WCFILLRTALVFSSVCAAFLL--PFFSLVMALIGSLLSIL 382 (433)
Q Consensus 345 ~~~~~~~~~~~~~~~~ia~~~--p~~~~v~~l~G~~~~~~ 382 (433)
+++..+ ...+.++++... ..+..++++.|....+.
T Consensus 282 ~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~ 318 (386)
T TIGR02358 282 KHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPL 318 (386)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122111 112222222222 34666666666666555
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.41 E-value=0.0031 Score=63.34 Aligned_cols=148 Identities=14% Similarity=0.013 Sum_probs=91.3
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHH-HHHHHH--HHHHH-HHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLL--LFAVV-CCYTASLMRYCFESKEGITTYPDIGE 114 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~l--~~~~~-~~~s~~~l~~~~~~~~~~~~y~~l~~ 114 (433)
-...|+.+++.....+..+.+|++ +++.|....+.|+. ...... ..+.. ...-+..+.+.. ++.+..|.+|+.+
T Consensus 36 ~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~ 114 (471)
T TIGR02119 36 FLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDVLK 114 (471)
T ss_pred eEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHH
Confidence 345677999999999999999988 77789777777753 111111 11111 111122233333 4667899999999
Q ss_pred Hhhchhh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHh
Q 013974 115 AAFGKYG-RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (433)
Q Consensus 115 ~~~G~~~-~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~ 193 (433)
+-||++. +.+..+...+.+++...+.+...+..++.+++- +.....++..++++-......++...+.
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GG~~av~~t 183 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----------SYLTALFIFSSSVLIYTTFGGFRAVALT 183 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999654 667777777777777777777788888777642 1122233333334444455566666665
Q ss_pred HHHHHH
Q 013974 194 SATGVV 199 (433)
Q Consensus 194 s~~~~~ 199 (433)
..+-.+
T Consensus 184 d~iQ~~ 189 (471)
T TIGR02119 184 DAIQGI 189 (471)
T ss_pred HHHHHH
Confidence 555443
No 64
>PRK11375 allantoin permease; Provisional
Probab=98.31 E-value=0.0019 Score=64.83 Aligned_cols=231 Identities=15% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCHHHHHHHhhchhhhHHHHHHHH-HHHHHHHHHHHHHhhhhhh----hhcCCCC---CCCCCcccCch-hHHHHHHHHH
Q 013974 107 TTYPDIGEAAFGKYGRLLISVLLY-TELYSYCVEFIILEGDNLT----SLFPGAS---LDWPGFQLDST-HLFGILTALI 177 (433)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~-~~~~~~~~~y~i~~~~~l~----~~~~~~~---~~~~~~~~~~~-~~~~i~~~~~ 177 (433)
-++.-+.|..||++|..+..+... +...+=........++.+. .+++.+. .+.+....+.. ....++..++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 578889999999999887777663 3443444444444455544 3332211 00000011111 1212233344
Q ss_pred HhhhhccccCchhhHhHHHHHHHHHHHHHHhhhhcc-ccccc----cCCCCcc---ccccChhhhhhhHhhhcc-cccch
Q 013974 178 VLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGT-IEGIG----FHPTGQV---VKWSGMPFAIGIYGFCYS-GHSVF 248 (433)
Q Consensus 178 ~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~---~~~~~~~~~~~~~~faf~-~~~~i 248 (433)
..++.. ...+.++++...+.....+..+...+... ..+.+ ..+.... .....+..++...+=++. ...+.
T Consensus 169 ~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~ 247 (484)
T PRK11375 169 NVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSA 247 (484)
T ss_pred HHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccc
Confidence 455443 34455555555443333222222221111 11111 1111000 011223233333333343 44578
Q ss_pred hhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHH----HHhhcccchh--hhhhcCCCchhhHHHHHHHHHHHhhhhc-
Q 013974 249 PNIYQSMADKTKFTKALITCFALCVLIYGGVAVMG----FLMFGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKY- 321 (433)
Q Consensus 249 ~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~g----y~~fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~s~- 321 (433)
+...+..|++++..+....+..+...+...+|+.. ...+++...+ ++..+.. +......+.+..+++...+-
T Consensus 248 ~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~-~~~~~~~a~l~~v~a~~~tN~ 326 (484)
T PRK11375 248 SDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD-SLFASFFAVLVILMTTISTNA 326 (484)
T ss_pred cchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc-chHHHHHHHHHHHHHHHHHHH
Confidence 89999999988776766667666666654444433 2345543322 2333332 12333334444555555554
Q ss_pred cccccchHHHHHhhcCCC
Q 013974 322 ALLMNPLARSIEELLPAG 339 (433)
Q Consensus 322 p~~~~~~~~~~~~~~~~~ 339 (433)
....++.-..+.+.+|+.
T Consensus 327 ~~N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 327 TGNIIPAGYQIAALAPTK 344 (484)
T ss_pred HhhcccHHHHHHHhCcCc
Confidence 357788888888888865
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.28 E-value=0.004 Score=62.67 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=85.8
Q ss_pred ccCCCCCchHHHHHHHHHHhhc-cccchhHHHHhhhcHHHH-HHH---HHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 013974 40 LPIAHGCSFTQTIFNGINVMAG-VGLLSTPYTVKEAGWASL-VVL---LLFAVVCCYTASLMRYCFESKEGITTYPDIGE 114 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG-~Gil~lP~~~~~~G~~g~-~~~---l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~ 114 (433)
...+|+.+.+-.......+..+ ..++++|....+.|+.+. ... +.......+-...+.+.. +.++..|..|+.+
T Consensus 34 ~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 34 FLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred hccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 3445556666666666666666 669999999888997622 222 244455555556666665 6888999999999
Q ss_pred Hhhc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 115 AAFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 115 ~~~G-~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
+-|| |+.|.+..+...+.....+...+...+..++..++
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999 89999999999999999999999999999866655
No 66
>PRK09395 actP acetate permease; Provisional
Probab=98.22 E-value=0.0097 Score=60.92 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 116 (433)
|---..|+.+++...+.+..+.++++ .++.|....+.|+.+....+............+.+-.+ ..+..|+.|+.++=
T Consensus 63 df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r-~~g~~T~~d~l~~R 141 (551)
T PRK09395 63 DFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLR-NLGKYTFADVASYR 141 (551)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 33445667888888888888888877 78899887778876433222222222222334444433 55679999999999
Q ss_pred hc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHH
Q 013974 117 FG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (433)
Q Consensus 117 ~G-~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~ 195 (433)
|| |+.+.+..+...+.........+...+..++.+++- +.....++..+++.--.....++...+...
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-----------~~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-----------NYHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 98 457777777666666666667777777777776541 112223333334444444555565555544
Q ss_pred HH
Q 013974 196 TG 197 (433)
Q Consensus 196 ~~ 197 (433)
+-
T Consensus 211 iQ 212 (551)
T PRK09395 211 IK 212 (551)
T ss_pred HH
Confidence 44
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.18 E-value=0.0074 Score=58.13 Aligned_cols=312 Identities=16% Similarity=0.137 Sum_probs=146.5
Q ss_pred HHHHHhhccccchhHHHH-hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHHHHHHH
Q 013974 54 NGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLL 129 (433)
Q Consensus 54 ~l~~~~iG~Gil~lP~~~-~~~G--~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~ 129 (433)
.+...-+|+|.|-.|-.. +++| |. +.+.+++.++..-..+.. +-.+.+ .+|.++.++ +||+...+..+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g-G~~~~l~~~-~g~~f~~lf~~~~ 76 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG-GGYDSLSAR-IGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC-CCHHHHHHH-hChHHHHHHHHHH
Confidence 456678999999999665 6676 45 777777777666655554 211222 577776654 5676666665555
Q ss_pred HHHHH-------HHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHH
Q 013974 130 YTELY-------SYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (433)
Q Consensus 130 ~~~~~-------~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~ 202 (433)
++... -..++|-.. +.++++.. . .........++...+.+-++ .|.-|-..+++.+-....+
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~-----~-~~~~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~lL 145 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG----IAPLLHSP-----T-SLLALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPALL 145 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH----HHhccCcc-----c-chHHHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHHH
Confidence 43322 122333333 33444321 0 00011112222222222222 3333444444444333333
Q ss_pred HHHHHhhhhccccccccC--CCCccccccChhhhhhhHhhhcc-------cccchhhHHh-hccchhh-hHHHHHHH---
Q 013974 203 LIVLCVLFLGTIEGIGFH--PTGQVVKWSGMPFAIGIYGFCYS-------GHSVFPNIYQ-SMADKTK-FTKALITC--- 268 (433)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~-~~~~~~~~--- 268 (433)
+....++..+...+.... ++.+..+-..+..++-.-.+++. +...+-.+.+ |+|||+| .++....+
T Consensus 146 i~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia 225 (378)
T TIGR00796 146 VTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIA 225 (378)
T ss_pred HHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 333333333333322111 11111111234455555555555 6777777777 8999975 44444433
Q ss_pred HHHHHHHHHHHHhHHHHhhc---cc-chhhhhhcCC---CchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCC
Q 013974 269 FALCVLIYGGVAVMGFLMFG---QG-TLSQITLNMP---PHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS 341 (433)
Q Consensus 269 ~~~~~~~y~~~g~~gy~~fg---~~-~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~ 341 (433)
.+....+|...+..|...-+ +. ..+.++.+.. -++....+......++.+++.......+.+.+++..++
T Consensus 226 ~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--- 302 (378)
T TIGR00796 226 AVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--- 302 (378)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 34444556666665554322 11 1122221111 01222333344455555666555555677777776552
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHH
Q 013974 342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKI 394 (433)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~ 394 (433)
.+ .+ .........+.+++.. .++.++++ +... .++.|..+-+..
T Consensus 303 ~~-y~--~~v~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 303 LS-YK--TWVIVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred CC-HH--HHHHHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 11 11 1222233334444443 56666664 3444 666666655443
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.13 E-value=0.015 Score=59.53 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=89.2
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
--..|+.+++...+.+..+.+++. .++.|....+.|+.+....+..........+.+.+-.+ ..+..|..|..++=||
T Consensus 63 ~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lr-r~g~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 63 YTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLR-NLGRYTFADVASYRLK 141 (549)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHcC
Confidence 334667888888888888877765 88899877778876443332211111123344555544 4566899999988887
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHH
Q 013974 119 -KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (433)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~ 197 (433)
|..+.+..+...+.........+...+..++.+++- ....-.++..+++..-.....++...+...+-
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-----------NYHVAVVLVGILMVMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556777777666666666777777778777777542 11122233333334344455565555555544
Q ss_pred H
Q 013974 198 V 198 (433)
Q Consensus 198 ~ 198 (433)
.
T Consensus 211 ~ 211 (549)
T TIGR02711 211 A 211 (549)
T ss_pred H
Confidence 3
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=98.09 E-value=0.011 Score=58.09 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=87.4
Q ss_pred CCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhh--cc
Q 013974 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTI--WL 184 (433)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~--~~ 184 (433)
-++..+.|..||.+|..+..+...+...+-........++.+++.++. . .. ...++..++..+.. ..
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-~---------~~-~~~~i~~~l~~~~~~~G~ 139 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-D---------IN-LLIVLSGLLMTVTAYFGI 139 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-C---------HH-HHHHHHHHHHHHHHHHHH
Confidence 578889999999999998887777666555555555556655554431 1 11 12233333333333 33
Q ss_pred ccCchhhHhHHHHHHHHHHHHHHhhhhccc--cccc-cCCCCccccccChhhhhhhHhhhc-ccccchhhHHhhccchhh
Q 013974 185 RDLRVISYLSATGVVATILIVLCVLFLGTI--EGIG-FHPTGQVVKWSGMPFAIGIYGFCY-SGHSVFPNIYQSMADKTK 260 (433)
Q Consensus 185 ~~~~~l~~~s~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~ 260 (433)
+.++.+.+++...+.. ..+...+.... ++.+ ..... ..+...+..++...+-.+ ....+.+...+..|+|++
T Consensus 140 ~~i~~~~~~~~p~~~~---~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~ 215 (404)
T PRK11017 140 SALTILSRIAVPAIAL---LGGYSVWLAVNDVGGLDGLKAIV-PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI 215 (404)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhccCchhhhhcCC-CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc
Confidence 4555555444433222 22211111111 1111 11111 112234444444433222 346678888888888776
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 013974 261 FTKALITCFALCVLIYGGVAVMGFLMFGQ 289 (433)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~g~~gy~~fg~ 289 (433)
.......+..+...+...+|.......++
T Consensus 216 ~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 216 AVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555666666666666667665555664
No 70
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.96 E-value=0.024 Score=55.98 Aligned_cols=47 Identities=9% Similarity=-0.021 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013974 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (433)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~ 152 (433)
.++..|..++-+||+..++..+...+....+....+...+--++.++
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999988877776666667777777776666665554
No 71
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.89 E-value=0.027 Score=54.39 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=113.7
Q ss_pred CchHHHHHHHHHHhhccc-cchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhh-h---hCCCCCCHHHHHHHhhch
Q 013974 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCF-E---SKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~-~---~~~~~~~y~~l~~~~~G~ 119 (433)
.|...-+....++.+|-| +--.|+...+.|-. -++..++.- +..---.+++|.+ . +....++|.++.. +|
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~-l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~ 84 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFL-LLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KK 84 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHH-HHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Cc
Confidence 677889999999999999 88899888666654 333333322 2222223334432 1 2333455655554 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC----CCCCCCC--C-c--ccCchhH---HHHHHHHHHhhhhccccC
Q 013974 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP----GASLDWP--G-F--QLDSTHL---FGILTALIVLPTIWLRDL 187 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~----~~~~~~~--~-~--~~~~~~~---~~i~~~~~~~pl~~~~~~ 187 (433)
++ ...++......+..+..|.++.+=.+.-+.. .+..+.. . . +...+.. ...+...++.-+...|..
T Consensus 85 ~~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV 163 (439)
T COG0733 85 KW-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGV 163 (439)
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhH
Confidence 33 3355555566666677777776655443221 2110000 0 0 0001011 111111112222223333
Q ss_pred c-hhhHhHHHHHHHHHHHHHHhhhhccc-----cccccCCCCcc---ccccChhhhhhhHhhhcc-cccchhhHHhhccc
Q 013974 188 R-VISYLSATGVVATILIVLCVLFLGTI-----EGIGFHPTGQV---VKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMAD 257 (433)
Q Consensus 188 ~-~l~~~s~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~ 257 (433)
+ .+-+.+..-+-..+++.+.+.++... ++.+.--.+++ .+++.+..++|...|+.+ |.....+..+.++|
T Consensus 164 ~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k 243 (439)
T COG0733 164 KKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK 243 (439)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3 24445554444444444443433222 22221112222 235667789999999988 77778888888888
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 013974 258 KTKFTKALITCFALCVLI 275 (433)
Q Consensus 258 p~~~~~~~~~~~~~~~~~ 275 (433)
.++..+........-..+
T Consensus 244 ~~~l~~sa~~v~~~n~~~ 261 (439)
T COG0733 244 KSDLVSSALSIVLLNTLI 261 (439)
T ss_pred ccchhhhHHHHHHHHHHH
Confidence 888776544444443333
No 72
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.87 E-value=0.0049 Score=57.93 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=85.9
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+.+....+=..++-|+|...=|..-.+-||+ +.+..++-++..--.+....-.++-.++-++.+|++++..||+++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 56678888999999999988889777999999 77777766666555555555555545666999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~ 150 (433)
..+..++.+.....++....++.+.+
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988888888887777755
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.75 E-value=0.062 Score=54.20 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=67.2
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhh----CCCCCCHHHHHH
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFES----KEGITTYPDIGE 114 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~----~~~~~~y~~l~~ 114 (433)
--..|+.+++-..+.+..+.+++. +++.|....+.|+.+....+............+.+-.++ .++..|..|+.+
T Consensus 32 ~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 32 VLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 334667888888888888888766 677897777778763222222222222233334332221 456789999999
Q ss_pred HhhchhhhH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 115 AAFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 115 ~~~G~~~~~---~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
+=||++.+. +..+...+.........+...+..++.+++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g 153 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG 153 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999964433 344433333334445555566666666654
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.73 E-value=0.074 Score=54.52 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=76.9
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 116 (433)
|---..|+.+++...+.+..+.++++ .++.|....+.|+.+....+............+.+-.+ +.+..|..|+.++=
T Consensus 26 dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~r-r~~~~T~~e~l~~R 104 (552)
T TIGR03648 26 EFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLR-KFGKYTVPDFIGDR 104 (552)
T ss_pred HHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCccHHHHHHHH
Confidence 33345677999999999999988776 78899777777865332222212112223455555554 55678899999888
Q ss_pred hchh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 117 FGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 117 ~G~~-~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
||++ .+.+..+...+.........+...+..++.+++
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g 142 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE 142 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8855 577777666666666667777777777777654
No 75
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.057 Score=52.53 Aligned_cols=105 Identities=12% Similarity=-0.013 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHhhccccchhHHHH-hhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (433)
.+..+..+....+-+|+|-++--.+. ++-|+- .++.++ .-.....-...-+|.. ..+ .++..|..++-++|+..+
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill-s~l~~~~~Q~~~arLg-ivT-G~~laq~ir~~y~~~~~~ 93 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL-SNLMAYILQELSARLG-IVT-GKGLAEAIRERYLPGLGI 93 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHh-CCcHHHHHHHHccchHHH
Confidence 56666777777778888855544333 455544 222211 1111111122222221 133 367888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 124 LISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 124 ~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
+..+...+.-..++++.+...+--++-++.
T Consensus 94 ~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 94 LLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999888888889999999888888877764
No 76
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.69 E-value=0.004 Score=61.98 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=127.5
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhh
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKE--AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~--~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (433)
.+.++....-.+..+....+.+...... .++. +++..++...+...-.-...... .+.+ .++..+.|..||++|.
T Consensus 9 ~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G-~r~G-l~~~v~sR~~FG~~Gs 86 (440)
T PF02133_consen 9 WSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG-PRTG-LPTMVLSRASFGYRGS 86 (440)
T ss_dssp B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH-HCC----HHHHTTTTS-TTTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc-cccC-CCchhcchhccCcchH
Confidence 4556666555555555554444433322 2344 55444444444433333333332 2333 5677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCC--C--cc--cCchhHHHHHHHHHHhhhhccccCchhhHhHHH
Q 013974 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--G--FQ--LDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (433)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~--~--~~--~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~ 196 (433)
.+..+...+...+-........++.+..+.+....++. + .. ........++..++..+.. ....+.+.++...
T Consensus 87 ~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~l~~~~~~ 165 (440)
T PF02133_consen 87 KLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKALRRLAVI 165 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHHHHhHHhh
Confidence 99999888888888888888888888877665321000 0 00 0011111111112222211 2233344443333
Q ss_pred HHHHHHHHHHHhhhh-cccccc--ccCCCCccccccChhhhhhhHhhhcc-cccchhhHHhhccchhhhHHHHHHHHHHH
Q 013974 197 GVVATILIVLCVLFL-GTIEGI--GFHPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALC 272 (433)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 272 (433)
.........+...+. ....+. ..+..........+..++....-.+. ...+.+...+.+|++++..+....+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~ 245 (440)
T PF02133_consen 166 AAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLGFPGG 245 (440)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeehhhhH
Confidence 322222221121111 111111 11111111111123333333332222 33456688899998887777777777777
Q ss_pred HHHHHHHHhHHHHh----hcccchhhh--hhcCCCchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcC
Q 013974 273 VLIYGGVAVMGFLM----FGQGTLSQI--TLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP 337 (433)
Q Consensus 273 ~~~y~~~g~~gy~~----fg~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~ 337 (433)
......++..+... .++...+.. +..+.+..............+..+..-...++....+.+.++
T Consensus 246 ~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~ 316 (440)
T PF02133_consen 246 FIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFP 316 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccc
Confidence 77777766665543 222222222 222221101111121222223334444556677777777776
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.56 E-value=0.095 Score=51.18 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHH---HHHHHHhhhhCCCCCCH-----HHHHH
Q 013974 44 HGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYT---ASLMRYCFESKEGITTY-----PDIGE 114 (433)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s---~~~l~~~~~~~~~~~~y-----~~l~~ 114 (433)
++.|-+|+......+++|.| ++++|.+.+..|.-+++.+.+.+++..-+ -..+..-.++++++++| .++-+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 45899999999999999998 99999998777644755555554444333 33333333434454547 77777
Q ss_pred HhhchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHh
Q 013974 115 AAFGKYGRLLISVLLYTELYS-YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (433)
Q Consensus 115 ~~~G~~~~~~~~~~~~~~~~~-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~ 193 (433)
...|||-..+..+. ++..++ .+....-..++.+++.++ . .. +...+...++........++++.++
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~----------~-~~-~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN----------V-PK-LVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----------C-cH-HHHHHHHHHHHHHHHhcCchHHHHH
Confidence 78888866666665 333322 234444444455553321 0 12 2222233333334455678888887
Q ss_pred HHHHHHHHHH
Q 013974 194 SATGVVATIL 203 (433)
Q Consensus 194 s~~~~~~~~~ 203 (433)
+...+..+..
T Consensus 192 ~~~lvP~m~~ 201 (425)
T TIGR00835 192 SSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHH
Confidence 7766544433
No 78
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.52 E-value=0.068 Score=51.93 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=84.0
Q ss_pred CccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHH---HHHHHHHHHHhhhhCCCCCCH----H
Q 013974 39 ELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVV---CCYTASLMRYCFESKEGITTY----P 110 (433)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~---~~~s~~~l~~~~~~~~~~~~y----~ 110 (433)
+++.+++.|-+|+....+.+.+|.| +.+...++...|.-.++.+.+++++ +-|+=-.|..-.|++.++.+| .
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 3444567999999999999999999 8889999987777677777665544 444445555554433333333 3
Q ss_pred HHHHHhhchhh-hHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccC
Q 013974 111 DIGEAAFGKYG-RLLISVLLYTELYSY--CVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDL 187 (433)
Q Consensus 111 ~l~~~~~G~~~-~~~~~~~~~~~~~~~--~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~ 187 (433)
...++.+|+++ ..+..++ .+..++. .....-.+++.+++.++- +. +..-+...++..+.....+
T Consensus 92 yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~i-----------~~-~~~gi~l~~l~~~vi~GGi 158 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFGI-----------PP-WITGIILAILVALVIFGGI 158 (416)
T ss_pred HHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhccc-----------cH-HHHHHHHHHHHHHHHHcch
Confidence 56677777654 3333333 2222222 233333344444433221 11 2222333334445566677
Q ss_pred chhhHhHHHHH
Q 013974 188 RVISYLSATGV 198 (433)
Q Consensus 188 ~~l~~~s~~~~ 198 (433)
|++..++..-+
T Consensus 159 krI~~v~~~lV 169 (416)
T PF01235_consen 159 KRIAKVSEKLV 169 (416)
T ss_pred hHHHHHHHHHH
Confidence 77777766443
No 79
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.023 Score=57.64 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred CchHHHHHHHHHHhhccccc-hhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCCHHHHHHHhhchhh
Q 013974 46 CSFTQTIFNGINVMAGVGLL-STPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYG 121 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil-~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~ 121 (433)
.+..+...=.+-.+.|.-.+ =|-+.+..+|.. +.++.+++++.+..+..-+...+.+ .|.-++|-.+. +.+|+-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmIS-RsLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMIS-RSLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEe-cccCccc
Confidence 44555555566666776533 377888899999 9888888888888888777665421 34456776544 4566655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcCC
Q 013974 122 RLLISVLLYTELYSYCVEFIILEGDNLTS-LFPG 154 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~y~i~~~~~l~~-~~~~ 154 (433)
+-.++++.++........|++..-+.+-. ++|.
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~ 227 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPA 227 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccH
Confidence 55566666666656666677777776543 4443
No 80
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.42 E-value=0.18 Score=51.08 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=83.1
Q ss_pred ccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH----HhhhhCCCCCCHHHHHH
Q 013974 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMR----YCFESKEGITTYPDIGE 114 (433)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~----~~~~~~~~~~~y~~l~~ 114 (433)
--..|+.+++...+.+..+.+++. .++.|....+.|+.+....+............+. +-..+..+..|..|..+
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 345677899999999998888888 6779988778886532111111111111112211 11123567889999999
Q ss_pred Hhhchhh---hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhh
Q 013974 115 AAFGKYG---RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (433)
Q Consensus 115 ~~~G~~~---~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~ 191 (433)
+=||++. +.+..+...+.....+..-+...+..+..+++- +.....++..++++.-.....++...
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM-----------SYETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9998643 334444444444455555555666677666542 11122333334444444555555555
Q ss_pred HhHHHHH
Q 013974 192 YLSATGV 198 (433)
Q Consensus 192 ~~s~~~~ 198 (433)
+.-.+-.
T Consensus 185 ~TD~iQ~ 191 (502)
T PRK15419 185 WTDTVQA 191 (502)
T ss_pred HHHHHHH
Confidence 5554443
No 81
>PRK10484 putative transporter; Provisional
Probab=97.37 E-value=0.21 Score=50.83 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHh
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~ 116 (433)
|---..|+.+++-..+.+..+.++++ .++.|....+.|+.........+.......+.+..-.+ +.+..|..|+.++-
T Consensus 32 dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~R 110 (523)
T PRK10484 32 GYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYL-KSGITTIPDFLEER 110 (523)
T ss_pred hheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHh
Confidence 33445677899999999988888887 77799777777865322222212222223334444333 45778999999999
Q ss_pred hchhhhHHHHHHHHH
Q 013974 117 FGKYGRLLISVLLYT 131 (433)
Q Consensus 117 ~G~~~~~~~~~~~~~ 131 (433)
||++.+.+......+
T Consensus 111 yg~~~~~~~~~~~~i 125 (523)
T PRK10484 111 YDKTTRRIVSILFLI 125 (523)
T ss_pred cCchhHHHHHHHHHH
Confidence 999877766654433
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.25 E-value=0.026 Score=55.61 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+.+-..-+=..++-|+|.+-=|.--.|.||. +.+.+++-++..---+..++-..+..++-+|..|++++..|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 56678888888899999999999999999988 87777766666555556665554445566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~ 150 (433)
..+...+.......++.....+.+.+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99887777767777776666666655
No 83
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.09 E-value=0.019 Score=57.75 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=44.2
Q ss_pred cChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhHH
Q 013974 229 SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMG 283 (433)
Q Consensus 229 ~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~g 283 (433)
.++...+++++-+-.|...=..+..|+|+|+ ..||-...+....++.|.++.+.-
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 3555677777777777777778889999998 489999999999999999976653
No 84
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.99 E-value=0.52 Score=48.03 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=76.4
Q ss_pred HhhhhccccCchhhHhHHHHHHHHHHHHHHhhhhcc-ccc----cccCCCCccc---cccChhhhhhhHhhhcc-cccch
Q 013974 178 VLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGT-IEG----IGFHPTGQVV---KWSGMPFAIGIYGFCYS-GHSVF 248 (433)
Q Consensus 178 ~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~---~~~~~~~~~~~~~faf~-~~~~i 248 (433)
+.-++..|.+++..++..+......++.+++++... .++ ...--.+++. +.+-+.++++...|+.+ |....
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceE
Confidence 344556677877777766554322222222222221 111 1110111122 22334579999999998 67777
Q ss_pred hhHHhhccchhhhHHHHHHHHHHHHHHHHH-----HHhHHHHhhcc--cc-----h--h-------hhhhcCCCchhhHH
Q 013974 249 PNIYQSMADKTKFTKALITCFALCVLIYGG-----VAVMGFLMFGQ--GT-----L--S-------QITLNMPPHAFASK 307 (433)
Q Consensus 249 ~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~-----~g~~gy~~fg~--~~-----~--~-------~i~~~~~~~~~~~~ 307 (433)
....+.+|+.+|..|............-+. +++.|+.+... +. . + .+...+|.+.....
T Consensus 270 it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~ 349 (523)
T PF00209_consen 270 ITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAI 349 (523)
T ss_dssp HHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHH
T ss_pred EEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHH
Confidence 777778887777666444433333333322 33444443211 00 1 1 12334454444444
Q ss_pred HHHHHHHHHhhhhccccccchHHHHHhhcCCC
Q 013974 308 VAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (433)
Q Consensus 308 ~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~ 339 (433)
+......+..+++.-..+.+....+.|.++..
T Consensus 350 lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~ 381 (523)
T PF00209_consen 350 LFFLMLFLAGLTSQISMLEVIVSALMDEFPIS 381 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTST--
T ss_pred HHHHHHHHHHhhhcCCceeceeEeeeecCccc
Confidence 44444444445555555566667777766554
No 85
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.93 E-value=0.48 Score=46.69 Aligned_cols=96 Identities=9% Similarity=0.107 Sum_probs=56.1
Q ss_pred cccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHH----hHHHHhhcccc--hhhhhhcCCCchhhH-HHHHHHHHHH
Q 013974 244 GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVA----VMGFLMFGQGT--LSQITLNMPPHAFAS-KVAVWTTVIN 316 (433)
Q Consensus 244 ~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g----~~gy~~fg~~~--~~~i~~~~~~~~~~~-~~~~~~~~~~ 316 (433)
..-|+|...+.-|+|++-.+--.++.-+.+.+..++| ..++..||+.. +.++..++++..... .....+.+-+
T Consensus 256 l~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iat 335 (497)
T COG1953 256 LALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVAT 335 (497)
T ss_pred HhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4567888888888887554444555556665555544 44556688874 455677787654443 2222223333
Q ss_pred hhhhccccccchHHHHHhhcCCC
Q 013974 317 PFTKYALLMNPLARSIEELLPAG 339 (433)
Q Consensus 317 ~~~s~p~~~~~~~~~~~~~~~~~ 339 (433)
+-+...-...+...-+..++|+.
T Consensus 336 i~~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 336 ISTNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred HhhhHHhccCChHHHHHHhcccc
Confidence 33444445555555567777776
No 86
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.90 E-value=0.46 Score=46.09 Aligned_cols=322 Identities=13% Similarity=0.108 Sum_probs=162.3
Q ss_pred cCCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHHHHHHHHHH---HHHHHHHHHHHHHhhhhCCCCCCHH----HH
Q 013974 41 PIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLF---AVVCCYTASLMRYCFESKEGITTYP----DI 112 (433)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~l~~---~~~~~~s~~~l~~~~~~~~~~~~y~----~l 112 (433)
+.+++.|-+|+...-..+.+|+| +-+..-+.+-.|.-.++.+-++ +..+-|+=-.|++-.++++++..|. ..
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 45667999999999999999999 7789999987777666665544 4555555566666655444344443 45
Q ss_pred HHHhhchhh-hHHHHHHHHHHHHH--HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCch
Q 013974 113 GEAAFGKYG-RLLISVLLYTELYS--YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (433)
Q Consensus 113 ~~~~~G~~~-~~~~~~~~~~~~~~--~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~ 189 (433)
.++-+|.++ ..+.. ...+..++ .+....-.+++.+++-++- .....-+...++..+.....+++
T Consensus 138 i~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGI------------PPLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHcchHH
Confidence 666666544 33333 23333333 5566666667777766543 12333334444555566778888
Q ss_pred hhHhHHHHHHHHHHHHHHhh-hhcccccccc------------CCCCcccccc------ChhhhhhhHhhhcc-cccchh
Q 013974 190 ISYLSATGVVATILIVLCVL-FLGTIEGIGF------------HPTGQVVKWS------GMPFAIGIYGFCYS-GHSVFP 249 (433)
Q Consensus 190 l~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~------~~~~~~~~~~faf~-~~~~i~ 249 (433)
+.+++..-+-.+.+..+... +....+-... ..+....+.. -+...+.--.||=+ |....|
T Consensus 205 Ia~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap 284 (452)
T COG1115 205 IAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAP 284 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcch
Confidence 88888766544333332211 1111111111 1111111111 11223333455544 666666
Q ss_pred hHHhhc--cchhhhHHHHHHHHHH-HHHHHHHHH----hHHHHhhcccchhh------hhhcCCCchhhHHHHHHHHHHH
Q 013974 250 NIYQSM--ADKTKFTKALITCFAL-CVLIYGGVA----VMGFLMFGQGTLSQ------ITLNMPPHAFASKVAVWTTVIN 316 (433)
Q Consensus 250 ~i~~~m--~~p~~~~~~~~~~~~~-~~~~y~~~g----~~gy~~fg~~~~~~------i~~~~~~~~~~~~~~~~~~~~~ 316 (433)
..+.+- ++|.|-.-+-..+..+ ..++....+ +.|.+..++..++. ....+++ +......+.+.+-
T Consensus 285 ~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~--~G~~fv~i~l~lF 362 (452)
T COG1115 285 IAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGS--WGSYFVAIALFLF 362 (452)
T ss_pred hHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCc--cHHHHHHHHHHHH
Confidence 666654 5776544444444333 222333333 33332222211221 1122342 3333333334444
Q ss_pred hhhhccccccchHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHhHHHHHH
Q 013974 317 PFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL-LPFFSLVMALIGSLLSIL 382 (433)
Q Consensus 317 ~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-~p~~~~v~~l~G~~~~~~ 382 (433)
.+++.-...+-..+.++.+..+ +......|.+.+....+-+.. .+.+..+.+...++...+
T Consensus 363 afTTIlg~yyyge~~~~fl~~~-----k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~glMai~ 424 (452)
T COG1115 363 AFTTILGWYYYGEKNIEFLFGS-----KKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGLMAIP 424 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchHHHHH
Confidence 4455555555555666665522 144455666665555444443 234555555555554433
No 87
>PRK15015 carbon starvation protein A; Provisional
Probab=96.71 E-value=0.12 Score=52.22 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=81.2
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhhHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (433)
.+-+-..-|=..++-|+|.+-=|..-.+.||+ +.+..++-.+..---+.+..-..+..++-+|..|++++..||+++.+
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 34467778888999999999999887899999 87777765555555555555444445566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013974 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (433)
Q Consensus 125 ~~~~~~~~~~~~~~~y~i~~~~~l~~ 150 (433)
..+..++.+.....++...+.+.+..
T Consensus 163 fli~i~~iliiviAvfalvvv~al~~ 188 (701)
T PRK15015 163 ALVACFMIMVIILAVLAMIVVKALTH 188 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99888888777777777777776643
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.014 Score=57.87 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=127.4
Q ss_pred HHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCCHHHHHHHhhchhhhHHHHH
Q 013974 51 TIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYGRLLISV 127 (433)
Q Consensus 51 ~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~~ 127 (433)
...|+.+-|+ .|=+++-..|+|.. +++++.....++..+..--...++| ..+-..|. +..+.+|+.-+--+++
T Consensus 40 cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-lis~slg~efggsigi 115 (643)
T KOG2083|consen 40 CMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-LISRSLGPEFGGSIGI 115 (643)
T ss_pred hhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-EEEecccccccchhHH
Confidence 3444444443 45588999999999 8888887777776666544433222 22223333 3455667766666777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHHHHHHHHHHHHH
Q 013974 128 LLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLC 207 (433)
Q Consensus 128 ~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~~ 207 (433)
+..+.+...+..|.+..+|.+.+++...... -.+. ...++.++++.++.. ..+.-.+++.+-+. ++.+.+.
T Consensus 116 Iy~f~~aVa~am~~vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i~~a-g~~w~~k~q~~ll~-il~iai~ 186 (643)
T KOG2083|consen 116 IYAFANAVATAMYVVGFAESVAHLFETESKE----MIDG---IGSVTVLILLAINVA-GVEWEAKLQIVLLL-ILLIAIA 186 (643)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHhhhc-cchhHHHHHHHHHH-HHHHHHH
Confidence 7777777888889999999999988764211 1111 222333333333333 33333444432221 1222222
Q ss_pred hhhhccccccc------------cCCCCcccccc---ChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHH
Q 013974 208 VLFLGTIEGIG------------FHPTGQVVKWS---GMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFAL 271 (433)
Q Consensus 208 ~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~ 271 (433)
-+..+....++ ...++...++. .+++.+++++=+..|.-.=..+.+++|+|+ ..|+....++..
T Consensus 187 ~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~v 266 (643)
T KOG2083|consen 187 DFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGV 266 (643)
T ss_pred HhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhh
Confidence 22222211111 11122233443 677788888888877777788899999998 688889999999
Q ss_pred HHHHHHHH
Q 013974 272 CVLIYGGV 279 (433)
Q Consensus 272 ~~~~y~~~ 279 (433)
...+|+.+
T Consensus 267 st~~yl~~ 274 (643)
T KOG2083|consen 267 STLLYLIF 274 (643)
T ss_pred hhhhhhhh
Confidence 99998664
No 89
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.67 E-value=2.2 Score=41.14 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhc--
Q 013974 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIW-- 183 (433)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~-- 183 (433)
.++..|..++-+||+..+...+...+.......+.+...+.-++-++ +.. ...+.++..+..+-+.+
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~~~~~~~~~~~~ll~~~ 109 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWIWVLLVAVIAILLLWLS 109 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHHHHHHHHHHHHHHHHHH
Confidence 36778888899999998888888888888888888877777776665 211 22333444444343434
Q ss_pred cccCchhhHhHHH
Q 013974 184 LRDLRVISYLSAT 196 (433)
Q Consensus 184 ~~~~~~l~~~s~~ 196 (433)
.++.+.+-++...
T Consensus 110 ~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 110 SGGYRRLERILKV 122 (358)
T ss_pred hccchHHHHHHHH
Confidence 5566666655543
No 90
>PHA02764 hypothetical protein; Provisional
Probab=94.47 E-value=4.1 Score=37.82 Aligned_cols=90 Identities=14% Similarity=-0.021 Sum_probs=62.6
Q ss_pred CCCCCchHHHHH-HHHHHhhccccchhHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhc
Q 013974 42 IAHGCSFTQTIF-NGINVMAGVGLLSTPYTVKEA--GWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (433)
Q Consensus 42 ~~~~~s~~~~~~-~l~~~~iG~Gil~lP~~~~~~--G~~g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (433)
.-|+.|.+++.+ |+.+...|.+ .+.|+-+... |.-.+..+++.+.++......+++.+.+.|+.+.--...++++|
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~-Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSG-ISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchh-HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 345578888887 4444444443 3556534333 44466777888888888888888888878877666666999999
Q ss_pred hhhhHHHHHHHHHH
Q 013974 119 KYGRLLISVLLYTE 132 (433)
Q Consensus 119 ~~~~~~~~~~~~~~ 132 (433)
|+++.+.++..++.
T Consensus 89 P~~GFLvG~a~WLt 102 (399)
T PHA02764 89 SKFYTIFGISLWLT 102 (399)
T ss_pred ccHHHHHHHHHHHH
Confidence 98888888755533
No 91
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.47 E-value=5.4 Score=39.20 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=101.6
Q ss_pred HHHhhhhCCCCCCHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHH
Q 013974 96 MRYCFESKEGITTYPDIGE-AAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILT 174 (433)
Q Consensus 96 l~~~~~~~~~~~~y~~l~~-~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (433)
+++-. |+-+..++.|+.. +.--++.|++..+.-.+..+...++.++-.+..+..+++-. -. .-.++.
T Consensus 94 ~A~~L-Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~----------~~-vgv~ig 161 (529)
T COG4147 94 IAEYL-RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP----------YH-VGVVIG 161 (529)
T ss_pred HHHHH-HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC----------ce-eehhhH
Confidence 34443 4667788888775 45556788888888788888888999999999998887631 01 112223
Q ss_pred HHHHhhhhccccCchhhHhHHHHHHHHH---HHH-HHhhhhccccc----------ccc----CCCCccccccChhhhhh
Q 013974 175 ALIVLPTIWLRDLRVISYLSATGVVATI---LIV-LCVLFLGTIEG----------IGF----HPTGQVVKWSGMPFAIG 236 (433)
Q Consensus 175 ~~~~~pl~~~~~~~~l~~~s~~~~~~~~---~~~-~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~~~ 236 (433)
.+++.-......++...+.+..--+..+ ++. +.+.+....+. ++. ....+-...++..+.++
T Consensus 162 ~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~is 241 (529)
T COG4147 162 GILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFIS 241 (529)
T ss_pred hHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHH
Confidence 3333334455566666666554432222 111 11222111100 000 00011112345555555
Q ss_pred hHhhhcccccchhhHHhhc---cchhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 013974 237 IYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (433)
Q Consensus 237 ~~~faf~~~~~i~~i~~~m---~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~ 286 (433)
...--..|....|++.-.. .+-++.+|.+.++......+|+..-..|+.+
T Consensus 242 l~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 242 LGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444556666665443 3445788999999999999999977766653
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.36 E-value=0.79 Score=44.33 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 013974 104 EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (433)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~ 154 (433)
++..-..+++++.||+.|+.+..+...+.|+.++++.....+|+++++.++
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788999999999999999999999999999999999999998764
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.06 E-value=0.84 Score=44.71 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcc
Q 013974 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (433)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~ 184 (433)
+..-..+++++.+|+.|..+..+...+.|+-++++-....+|++++.+++. +...+.++..++.+.++..
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki----------sY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI----------SYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChHHHHHHHHHHHHHHHHh
Confidence 334556778999999999999999999999999999999999999998742 1233444444544444444
Q ss_pred ccCchhhHhHH
Q 013974 185 RDLRVISYLSA 195 (433)
Q Consensus 185 ~~~~~l~~~s~ 195 (433)
.++.+-.++.
T Consensus 329 -Gl~~Ii~~s~ 338 (427)
T PF05525_consen 329 -GLDQIIKISV 338 (427)
T ss_pred -CHHHHHHHHH
Confidence 4444444444
No 94
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.26 E-value=1.3 Score=44.83 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=58.5
Q ss_pred CCCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 42 IAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
..|+..++.....+..+.+|++ ++++|....+.|.- ....+.... .....++...-.. ...+..+..|..++-||+
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-~~~~~~~~f~Pvf-~~~~v~~~~eYl~~Rf~~ 120 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-SVLLLGWIFIPVF-YRLGVTTMYEYLEKRFGG 120 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-HHHhhheEEEEEE-EecCeeehhHHHHHHhcc
Confidence 3566888888889999999988 88999888777754 222221111 1111122222221 244567777888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 013974 120 YGRLLISVLLYTELYSYCVEFI 141 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~y~ 141 (433)
..+....+...++.+.....++
T Consensus 121 ~~r~l~~l~f~l~~~~~l~v~~ 142 (585)
T KOG2349|consen 121 RVRYLATLSFILMIFLYLPVDM 142 (585)
T ss_pred cchhhHHHHHHHHHHhheeeeE
Confidence 8666666555544444333333
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=91.34 E-value=16 Score=36.01 Aligned_cols=316 Identities=18% Similarity=0.211 Sum_probs=142.9
Q ss_pred chHHHHHHHHHHhhccccchhHHHH-hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhh
Q 013974 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (433)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G--~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (433)
.....-+.+.....|+|=|-.|-.. +++| |. +.+-+++.++.--.-+.+- .+ ..+ .++++++++.--+.+.
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia--~~--~~~-~~~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA--VA--KSG-GGIEDLASRVGPKFAL 78 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hh--hcC-CCHHHHhcccCcHHHH
Confidence 4456677888889999988888666 5666 66 7777777775544333221 11 112 2787877755433333
Q ss_pred HHHHHHHH-HHHHH-----HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCchhhHhHHH
Q 013974 123 LLISVLLY-TELYS-----YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (433)
Q Consensus 123 ~~~~~~~~-~~~~~-----~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~~l~~~s~~ 196 (433)
.+..+... +..+. ..++|=+. ..++++. ........+.++...+.+-++.-| -|-+.++..+
T Consensus 79 if~~~i~l~IGP~~aiPRtaa~sfe~~----i~p~~~~-------~~~~~~~ifs~iFF~i~~~l~~~p-~kivd~iGk~ 146 (427)
T PF05525_consen 79 IFTILIYLSIGPLFAIPRTAAVSFEMG----IAPFFPE-------NSNISLLIFSIIFFAITYLLSLNP-SKIVDRIGKF 146 (427)
T ss_pred HHHHHHHHHHHhcccCcchhhhhHHHh----hhccCCc-------ccccchhhhhHHHHHHHHHHHhch-hhHHHHHHHH
Confidence 32221110 00000 01111111 1122221 011123333444444444444433 2333333322
Q ss_pred HHHHHHHHHHHhhhhccccccccC--CCCcc------ccc-c--ChhhhhhhHhhhcccccchhhHHhhc--cchhhhH-
Q 013974 197 GVVATILIVLCVLFLGTIEGIGFH--PTGQV------VKW-S--GMPFAIGIYGFCYSGHSVFPNIYQSM--ADKTKFT- 262 (433)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~-~--~~~~~~~~~~faf~~~~~i~~i~~~m--~~p~~~~- 262 (433)
-.-..++...+++..+.....+.. ++... .++ . +-.++++...|+ ..+..-.++. +++++..
T Consensus 147 LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg----~iIi~~i~~~g~~~~k~~~~ 222 (427)
T PF05525_consen 147 LTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFG----IIIINAIRQKGYKDKKEIKK 222 (427)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHhCCCCHHHHHH
Confidence 222222222233333333222111 11011 011 0 112344434333 2333333333 4454333
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHhhc---ccchh-hhhhcCCC---chhhHHHHHHHHHHHhhhhccccccchHHHH
Q 013974 263 ---KALITCFALCVLIYGGVAVMGFLMFG---QGTLS-QITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARSI 332 (433)
Q Consensus 263 ---~~~~~~~~~~~~~y~~~g~~gy~~fg---~~~~~-~i~~~~~~---~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~ 332 (433)
++..++.....++|...+..|...-+ ++.++ .++....+ ++....+..+...++.+++--.....+.+.+
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788888777776533 22222 23222111 1122333344455566666666667788888
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 013974 333 EELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILAIIMPSLCFIKI 394 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~~~ilP~l~~l~~ 394 (433)
++..++. ++. ....+.+.+++++|.. .++.++.+..-+. .++.|..+-+.+
T Consensus 303 ~~~~~ki---sY~---~~v~i~~i~S~~ian~--Gl~~Ii~~s~PiL---~~iYP~~IvLIl 353 (427)
T PF05525_consen 303 SELFPKI---SYK---VWVIIFTIFSFIIANL--GLDQIIKISVPIL---MFIYPVAIVLIL 353 (427)
T ss_pred HHHhccc---ChH---HHHHHHHHHHHHHHHh--CHHHHHHHHHHHH---HHHhHHHHHHHH
Confidence 8887622 111 1122233444555543 3566666443333 888888776654
No 96
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.03 E-value=5.8 Score=38.34 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 013974 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (433)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~ 154 (433)
+.+=..+..++.||+.|..+...++.+.|+-+++..+..++|+.++.++.
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~ 310 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK 310 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44456678899999999999999999999999999999999999999885
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.60 E-value=4.4 Score=39.90 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=55.7
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc
Q 013974 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (433)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~ 188 (433)
.....++.+|++++.+..+.+.+.|+-++++.....+|++++.++. +...+.++..++.++++.. .++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~i-----------sY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPL-----------SYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------cHHHHHHHHHHHHHHHHHh-HHH
Confidence 3456788999999999999999999999999999999999998651 2334555566666666555 444
Q ss_pred hhhHhHH
Q 013974 189 VISYLSA 195 (433)
Q Consensus 189 ~l~~~s~ 195 (433)
++-..+.
T Consensus 335 ~II~~s~ 341 (439)
T PRK15433 335 QLIQISV 341 (439)
T ss_pred HHHHHHH
Confidence 4444443
No 98
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=86.02 E-value=43 Score=34.16 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhccc-cchhHHH-HhhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 46 CSFTQTIFNGINVMAGVG-LLSTPYT-VKEAGW---A-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~~-~~~~G~---~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
.+-.+.....++-.++.| +--.||- +++.|+ + -.+.+++.|+=-.|-=..+.+-++ .+...-+..++=. +|-
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~gvw~ri~P~-l~G 159 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIGVWRRIAPA-LKG 159 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchhHHHHhCHH-hcC
Confidence 566788889999999999 7779965 566665 3 445555555555555555555542 4443333333333 333
Q ss_pred hhhHHHHHHH
Q 013974 120 YGRLLISVLL 129 (433)
Q Consensus 120 ~~~~~~~~~~ 129 (433)
.|..++.+..
T Consensus 160 igy~i~~i~~ 169 (629)
T KOG3659|consen 160 IGYAICLIAF 169 (629)
T ss_pred CchhhhHHHH
Confidence 3444444333
No 99
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=83.89 E-value=45 Score=32.58 Aligned_cols=97 Identities=16% Similarity=0.038 Sum_probs=50.5
Q ss_pred HHHHHHHhhccccchhHHHHhhhcHH---HHHHHHHHHHHHHHHHHHH-HHhhhhCCCCCCHHHHHHHhhchhhhHHHHH
Q 013974 52 IFNGINVMAGVGLLSTPYTVKEAGWA---SLVVLLLFAVVCCYTASLM-RYCFESKEGITTYPDIGEAAFGKYGRLLISV 127 (433)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~---g~~~~l~~~~~~~~s~~~l-~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 127 (433)
-+....+-+|+|-+. +..++|-- ..+..++.+.+..+..+.+ .|.. .. ..++..|..++-++|+.++....
T Consensus 10 g~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg-~v-Tg~~l~~~~r~~~~~~~~~~~~~ 84 (390)
T TIGR01197 10 GFLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLG-VV-TGLDLAEVCREHYPKVPRITLWI 84 (390)
T ss_pred HHHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhe-ee-cCCCHHHHHHHHCCCchHHHHHH
Confidence 344445557777444 33555533 3333333333333333222 2221 12 23788999999999877665554
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 128 LLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 128 ~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
...+...++....+...+--++-+++
T Consensus 85 ~~~l~ii~~~~~e~~G~a~al~ll~g 110 (390)
T TIGR01197 85 LAELAIIATDMAEVIGTAIALNLLSH 110 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444455566665555555555543
No 100
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=81.93 E-value=31 Score=29.39 Aligned_cols=108 Identities=11% Similarity=0.138 Sum_probs=58.2
Q ss_pred ccccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhc---cchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 013974 214 IEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQG 290 (433)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m---~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 290 (433)
.++..++.+...++|-++...+|.+.. .-+.+. .++.. +.+++.+|.+....-...++...+|+.....+-+
T Consensus 23 rgG~~w~~~~~~Fn~HP~lMv~Gfi~L---~geAiL-~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn- 97 (179)
T cd08762 23 RGGFAWDGSSKNFNWHPVLMVTGMVVL---YGNAAL-VYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHN- 97 (179)
T ss_pred CCccCCCCCCCceeehHHHHHHHHHHH---HHHHHH-hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 345555544445677666655554443 222222 22222 2355667888888888888888888866655543
Q ss_pred chhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccc
Q 013974 291 TLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNP 327 (433)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 327 (433)
...+.+.++-..|.-.....+..++-+..+....+|
T Consensus 98 -~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 98 -VHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred -ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444344554444445555555554444444
No 101
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=80.59 E-value=67 Score=32.35 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=17.3
Q ss_pred CCCCchHHHHHHHHHHhhccccchh
Q 013974 43 AHGCSFTQTIFNGINVMAGVGLLST 67 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~l 67 (433)
+++-|.++-...+..+-+|+|++.-
T Consensus 72 kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcc
Confidence 3346777888888889999997653
No 102
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=79.95 E-value=81 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHHhhccc-cchhHHHHhhhcH-HHHHHHHHHHHHHHHHHH
Q 013974 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAGW-ASLVVLLLFAVVCCYTAS 94 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~-~g~~~~l~~~~~~~~s~~ 94 (433)
.|..+-.+..++-.+|-| +.=.|+...+-|. ..++-.+++.++.-.-..
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~ 88 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLF 88 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHH
Confidence 478999999999999999 7779977655554 354444444444444433
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=78.90 E-value=71 Score=31.63 Aligned_cols=312 Identities=15% Similarity=0.063 Sum_probs=139.2
Q ss_pred chHHHHHHHHHHhhccccchhHHHH-hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhchhhh
Q 013974 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (433)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G--~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (433)
.....-+.+..--.|+|=|-.|-.. +++| |. +.+.+++.++.--.-+.. ..+ ..+ .++++++++.--+.+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgii--ava--~~~-g~~~~l~~rv~~~f~~ 83 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVV--ALA--KVG-GGVDSLSTPIGKVAGV 83 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HHh--hcC-CCHHHHhhhcchHHHH
Confidence 4667788889999999988888666 5677 55 777666666443322221 121 122 4777777755433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh--hh----hcCCCCCCCCCcccCchhHHHHHHHHHHhhhhcccc--CchhhHhH
Q 013974 123 LLISVLLYTELYSYCVEFIILEGDNL--TS----LFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD--LRVISYLS 194 (433)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~i~~~~~l--~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~--~~~l~~~s 194 (433)
.+ . ++.|..+ +-.+ .+ .++....+..+.+......+.++...+.+-++.-|+ .+.+.++-
T Consensus 84 ~f-~----------~~i~l~I-GP~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 84 LL-A----------TVCYLAV-GPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HH-H----------HHHHHHH-hhccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 22 2 1222221 1111 00 000000000110001112233334444444444332 33333333
Q ss_pred HHHHHHHHHHHHHhhhhccccccccC--CCCcc------ccc-c--ChhhhhhhHhhhcccccchhhHHhh-ccchhhhH
Q 013974 195 ATGVVATILIVLCVLFLGTIEGIGFH--PTGQV------VKW-S--GMPFAIGIYGFCYSGHSVFPNIYQS-MADKTKFT 262 (433)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~-~--~~~~~~~~~~faf~~~~~i~~i~~~-m~~p~~~~ 262 (433)
.-.+ ++....++..+...+.... ++... .++ . +-.++++...|+- ..+-.+.+. .+++++..
T Consensus 152 TP~L---L~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~---iii~~i~~~G~~~~~~~~ 225 (439)
T PRK15433 152 APLK---IIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI---VIVNAARSRGVTEARLLT 225 (439)
T ss_pred HHHH---HHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHH
Confidence 3222 2222222233322221111 10111 111 1 2224555555553 223333332 45665443
Q ss_pred ----HHHHHHHHHHHHHHHHHHhHHHHhh---ccc-chhhhhhcCCC---chhhHHHHHHHHHHHhhhhccccccchHHH
Q 013974 263 ----KALITCFALCVLIYGGVAVMGFLMF---GQG-TLSQITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARS 331 (433)
Q Consensus 263 ----~~~~~~~~~~~~~y~~~g~~gy~~f---g~~-~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~ 331 (433)
++..++.....++|...+..|...- ++. ..+.++..... ++....+..+...++++++--.....+.+.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777778888887776542 211 12223221111 123333334445556666666666777777
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHH-HHHhhHHHHHHH
Q 013974 332 IEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSIL-AIIMPSLCFIKI 394 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~G~~~~~~-~~ilP~l~~l~~ 394 (433)
+++.++. + +.....+...+++.++.+ .++.++.+ .... .++.|..+-+..
T Consensus 306 f~~~~~i----s---Y~~~v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 306 FAQYVPL----S---YRTLVFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHhhcCC----c---HHHHHHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 7776531 1 112223333344444442 24555543 4455 777887766654
No 104
>PLN02680 carbon-monoxide oxygenase
Probab=78.88 E-value=44 Score=29.85 Aligned_cols=97 Identities=11% Similarity=0.206 Sum_probs=57.1
Q ss_pred cccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchh
Q 013974 225 VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAF 304 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~ 304 (433)
.++|-++....|.+.. .++..+. ++..+.+++.+|.+....-...++...+|+.....+. ...++.+-++-..|
T Consensus 46 ~Fn~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~h--n~~~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFH--NEKGIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccCccccccHHHH
Confidence 5677777766665552 2222222 3444555677788888888888888888886544443 33444444444456
Q ss_pred hHHHHHHHHHHHhhhhccccccc
Q 013974 305 ASKVAVWTTVINPFTKYALLMNP 327 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~s~p~~~~~ 327 (433)
.-....+++.++.+..+....+|
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 65555555656655555544455
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=75.25 E-value=61 Score=32.76 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013974 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (433)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~ 152 (433)
.....++-.+..||++...+..+.++..+..+++-+...+.....+-
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afa 370 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFA 370 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 46777888899999999888888888899999999888888876653
No 106
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=74.56 E-value=84 Score=30.26 Aligned_cols=110 Identities=10% Similarity=-0.033 Sum_probs=69.5
Q ss_pred CCCCchHHHHHHHHHHhhccc-cchhHHHHhhhcHH-HHHHH--HHHHHHH-HHHHHHHHHhhhhCCCCCCHHHHHHHh-
Q 013974 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVL--LLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAA- 116 (433)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~--l~~~~~~-~~s~~~l~~~~~~~~~~~~y~~l~~~~- 116 (433)
.|+.+..-..+....+-+++. ..+=|.+-.+-|.- -+..+ +-...++ -.-+.-+.+-+ |+.+.-+..|+.++=
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~a-r~~nAltI~D~l~~RY 116 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILA-REYNALTINDLLFARY 116 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHhCCeeHHHHHHHHh
Confidence 455666777777777777776 55667666555532 22222 1112111 11223333443 466667888887755
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 013974 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (433)
Q Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~~ 153 (433)
=++.-.++..+...+...+..++.++..+..++...+
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g 153 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG 153 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC
Confidence 4666778888888888888889999988888887654
No 107
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=60.86 E-value=1.8e+02 Score=28.75 Aligned_cols=151 Identities=20% Similarity=0.164 Sum_probs=83.1
Q ss_pred cchhhhHHH-HHHHHHHHHHHHH-HHHhHHHHhhcccchhhhhhcC-CCchhhHHHHHHHHH--HHhhhhccccccchHH
Q 013974 256 ADKTKFTKA-LITCFALCVLIYG-GVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTV--INPFTKYALLMNPLAR 330 (433)
Q Consensus 256 ~~p~~~~~~-~~~~~~~~~~~y~-~~g~~gy~~fg~~~~~~i~~~~-~~~~~~~~~~~~~~~--~~~~~s~p~~~~~~~~ 330 (433)
++-++-.+- ...+..+...... +....++..|+. ..++...+. .+.+-...+...... .+...+++.+.++...
T Consensus 217 ~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~A 295 (415)
T COG0814 217 NYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFA 295 (415)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 344456664 6666666666544 466666666652 122222222 222222333222222 2223677777777765
Q ss_pred HHHhhcCCC----------CCc-hhhH-HHHHHHHHHHHHHHHHhhcc-cHHHHHHHHhHHHHHH-HHHhhHHHHHHHhc
Q 013974 331 SIEELLPAG----------ISN-NYWC-FILLRTALVFSSVCAAFLLP-FFSLVMALIGSLLSIL-AIIMPSLCFIKILG 396 (433)
Q Consensus 331 ~~~~~~~~~----------~~~-~~~~-~~~~~~~~~~~~~~ia~~~p-~~~~v~~l~G~~~~~~-~~ilP~l~~l~~~~ 396 (433)
.....+... .++ +... |..........+.+.+...| -+....+.+|++...+ +-++|.+++.+-++
T Consensus 296 i~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 296 IATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred HHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544322111 111 1111 44555556666777777777 4777778899889888 99999999998753
Q ss_pred --cccchhhHhhh
Q 013974 397 --RKATRTQIVSS 407 (433)
Q Consensus 397 --~~~~~~~~~~~ 407 (433)
++.+.+++...
T Consensus 376 ~~~~~~~~~~~~g 388 (415)
T COG0814 376 LIYKLPALKVYGG 388 (415)
T ss_pred hcCCCCceeecCC
Confidence 34455555543
No 108
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=60.73 E-value=23 Score=25.84 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=19.9
Q ss_pred CchhhhHHHhhhcccccccccccchhh
Q 013974 8 LSEYEKEELDRISRTRSSLSEKISFHK 34 (433)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (433)
+||+|++..+++.+....+|++-...-
T Consensus 3 LSe~E~r~L~eiEr~L~~~DP~fa~~l 29 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLRADDPRFAARL 29 (82)
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHh
Confidence 688888888888887777766655443
No 109
>COG4709 Predicted membrane protein [Function unknown]
Probab=60.27 E-value=1.1e+02 Score=26.22 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHhhccccchhHHHH-hhhcHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCF 100 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~ 100 (433)
-+..+++.+. +|.|.++.|... --.|.. .++.+++.++...++.+.+.-..
T Consensus 76 ~n~~~aii~~----~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~ag 128 (195)
T COG4709 76 KNVRRAIIAL----IGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAG 128 (195)
T ss_pred cchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666 556666666655 223444 45555555666666777776554
No 110
>PRK09928 choline transport protein BetT; Provisional
Probab=59.10 E-value=2.4e+02 Score=29.75 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=15.8
Q ss_pred CCchHHHHHHHHHHhhccccch
Q 013974 45 GCSFTQTIFNGINVMAGVGLLS 66 (433)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~ 66 (433)
+-|.++-...+..+-+|.|++.
T Consensus 92 efS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 92 EFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCcchHHHHHHHHhhhhhhee
Confidence 3455666677788889999764
No 111
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=55.92 E-value=56 Score=27.12 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchhhHHHHHHHHHHHhhhhccccccch
Q 013974 259 TKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (433)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~ 328 (433)
++.+|.+....-...++..++|+..-..+-+ ..+..+-++-..|.-.+..+++.++.+..+....+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn--~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHN--AKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4666788888888777777777765554433 3344333444456656666666666666666666664
No 112
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=45.72 E-value=1.5e+02 Score=24.35 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=51.9
Q ss_pred cccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhhhhcCCCchh
Q 013974 225 VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAF 304 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~i~~~~~~~~~ 304 (433)
.++|-++...+|.+... -+.+.. ++..+.++|.+|.+....-....+..++|+.....+ +...+...-++-..|
T Consensus 7 ~Fn~HP~lM~~gfi~l~---~eAiL~-~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~--~~~~~~~~~~SlHSw 80 (144)
T cd08766 7 IFNVHPVLMVIGFIFLA---GEAILA-YKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKF--HNEVGIPNLYSLHSW 80 (144)
T ss_pred eeeccHHHHHHHHHHHH---HHHHHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCccccccHHHH
Confidence 45666655555532211 111222 223455566778888888888888888888544433 333334433443455
Q ss_pred hHHHHHHHHHHHhhhhccccccch
Q 013974 305 ASKVAVWTTVINPFTKYALLMNPL 328 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~s~p~~~~~~ 328 (433)
.-.+..+++.++.+..+.....|.
T Consensus 81 lGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 81 LGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555555555555544444553
No 113
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.34 E-value=6.3e+02 Score=29.08 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Q 013974 264 ALITCFALCVLIYGGVAVMGFLM 286 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy~~ 286 (433)
-.....++.+.+|++++++.|..
T Consensus 24 E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 24 EALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 34445567777899999988865
No 114
>PRK09950 putative transporter; Provisional
Probab=39.61 E-value=4.3e+02 Score=26.91 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHHhhccccchh----HHHHhh-------hcHH-----HHHHHHHHHHHHHHHHHHH-----HH-hhh
Q 013974 44 HGCSFTQTIFNGINVMAGVGLLST----PYTVKE-------AGWA-----SLVVLLLFAVVCCYTASLM-----RY-CFE 101 (433)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~l----P~~~~~-------~G~~-----g~~~~l~~~~~~~~s~~~l-----~~-~~~ 101 (433)
++-|.++-...+..+-+|+|++.- |....+ .|.. +.....+=+.+..++.+.+ +- ...
T Consensus 82 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~ 161 (506)
T PRK09950 82 PEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHV 161 (506)
T ss_pred CCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 445666777778888899997643 211111 1111 2222222223333333222 22 222
Q ss_pred hCCCCCCHHHHHHHhhchh----hhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013974 102 SKEGITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNL 148 (433)
Q Consensus 102 ~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~~~~~~y~i~~~~~l 148 (433)
|+.+..+..+..+-.+|++ .+.++|++.++...+....-+-....++
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi 212 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATF 212 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4445567888888888753 3456665554443333333333333333
No 115
>TIGR00909 2A0306 amino acid transporter.
Probab=38.23 E-value=3.9e+02 Score=26.12 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=37.9
Q ss_pred CCHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 013974 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (433)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~~ 152 (433)
....+..++..|+++..++.+...+..++...+.+...+..+...-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888889998899999999999999999888888887654
No 116
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=37.87 E-value=1.6e+02 Score=21.37 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=29.0
Q ss_pred cHHHHHHHHhHHHHHHHHHhhHHHHHHHh--ccccchhhHhhhhhHhHHHHH
Q 013974 367 FFSLVMALIGSLLSILAIIMPSLCFIKIL--GRKATRTQIVSSTAIAVLGVI 416 (433)
Q Consensus 367 ~~~~v~~l~G~~~~~~~~ilP~l~~l~~~--~~~~~~~~~~~~~~~~~~g~~ 416 (433)
+...+...-+++++.-..++|.++|..++ +...+++|+.....++.+-.-
T Consensus 13 ~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFP 64 (81)
T PF10716_consen 13 DTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFP 64 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444337788998887764 345667777766655544443
No 117
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=34.81 E-value=3.6e+02 Score=24.63 Aligned_cols=37 Identities=8% Similarity=-0.080 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC
Q 013974 303 AFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~ 339 (433)
+....-.+.....+++.+.|...+-....+.--+.++
T Consensus 66 e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~ 102 (258)
T PRK10921 66 SPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH 102 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 4444556667778889999998876666655444443
No 118
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=34.10 E-value=3.3e+02 Score=24.01 Aligned_cols=40 Identities=8% Similarity=-0.070 Sum_probs=27.3
Q ss_pred CchhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCC
Q 013974 301 PHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 340 (433)
..|....-.+.....+...+.|...+-....+...+.+++
T Consensus 53 ~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 92 (215)
T TIGR00945 53 PTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHE 92 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3455555567778888899999988766666655554443
No 119
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=34.00 E-value=2.9e+02 Score=23.37 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=7.6
Q ss_pred hhcCCCCCchhhHHHHHHHH
Q 013974 334 ELLPAGISNNYWCFILLRTA 353 (433)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~ 353 (433)
+.++.++ +++..|......
T Consensus 86 ~~l~~~~-~~~~~~~~~~~~ 104 (205)
T PF07695_consen 86 SFLELKR-HPRLRRLLLILL 104 (205)
T ss_pred HHhCccc-CchHHHHHHHHH
Confidence 3344433 334444443333
No 120
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=33.42 E-value=1e+02 Score=20.26 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 013974 263 KALITCFALCVLIYGGVAVMGFLMFGQGT 291 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~~ 291 (433)
.-+.+-.++++++|+++|+.-+..+.++.
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 45566678889999999998776665543
No 121
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=32.82 E-value=5.1e+02 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=23.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 013974 256 ADKTKFTKALITCFALCVLIYGGVAVMGFL 285 (433)
Q Consensus 256 ~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~ 285 (433)
||++|.++....+...+..+-..++..-+.
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888887777766553
No 122
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=32.59 E-value=3.8e+02 Score=24.30 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCC
Q 013974 302 HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~ 339 (433)
.+....-.+.....+...+.|...+-....+.--+.++
T Consensus 75 ~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~ 112 (249)
T CHL00182 75 GEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKK 112 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 34555556777888889999998876666655544443
No 123
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.24 E-value=2.6e+02 Score=21.86 Aligned_cols=69 Identities=14% Similarity=-0.029 Sum_probs=42.6
Q ss_pred CCccCCCCCchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHH-HHHHHHHHHHHHHHHhhhhCCCC
Q 013974 38 GELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLL-LFAVVCCYTASLMRYCFESKEGI 106 (433)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l-~~~~~~~~s~~~l~~~~~~~~~~ 106 (433)
+|...-++.|.-+......-+....-++++|.+.--.+|. .....+ ...+...++...+.+..+..|+.
T Consensus 10 ~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~ 80 (111)
T TIGR03750 10 REPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEG 80 (111)
T ss_pred CCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCch
Confidence 3344556677767666665555555578899776656777 544444 44455556667777776655553
No 124
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=30.63 E-value=1.7e+02 Score=24.23 Aligned_cols=57 Identities=11% Similarity=0.055 Sum_probs=33.2
Q ss_pred HhHHHHHH-HHHhhHHHHHHH-hccccchhhHhhhhhHhHHHHHHHHHhHHHHHHHHHh
Q 013974 375 IGSLLSIL-AIIMPSLCFIKI-LGRKATRTQIVSSTAIAVLGVICAILGTFSSVAKIAE 431 (433)
Q Consensus 375 ~G~~~~~~-~~ilP~l~~l~~-~~~~~~~~~~~~~~~~~~~g~~~~v~gt~~~i~~~i~ 431 (433)
.|+.++.+ +|+.|.+.+..- ...+.-+..+-...+-+++|+..++.++..+.....+
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555 999998876641 1111111111334556889999999888876655443
No 125
>PF14373 Imm_superinfect: Superinfection immunity protein
Probab=29.63 E-value=1.1e+02 Score=19.34 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHhhHHHHHHHhccccchhhHhhhhhHhHHHHHHHHHhHH
Q 013974 384 IIMPSLCFIKILGRKATRTQIVSSTAIAVLGVICAILGTF 423 (433)
Q Consensus 384 ~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~gt~ 423 (433)
|++|.+.-.+ |++++++........+....+.-+...+
T Consensus 2 YflP~iiA~~--r~~~~~~~I~~~Nl~lGWT~iGWv~aLi 39 (43)
T PF14373_consen 2 YFLPSIIAFR--RKHPNKWAIFLLNLLLGWTGIGWVAALI 39 (43)
T ss_pred eechHHHHHH--cCCCcchhhHhHHHHHHhHHHHHHHHHH
Confidence 6788887776 3333444444444445555555554444
No 126
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=29.51 E-value=55 Score=20.81 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 013974 263 KALITCFALCVLIYGGVAVMGFLMFGQG 290 (433)
Q Consensus 263 ~~~~~~~~~~~~~y~~~g~~gy~~fg~~ 290 (433)
.+...++.+..++..+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4555666777777777777778888853
No 127
>PLN02810 carbon-monoxide oxygenase
Probab=29.35 E-value=4.2e+02 Score=23.72 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=57.6
Q ss_pred cccccCCC--CccccccChhhhhhhHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhHHHHhhcccch
Q 013974 215 EGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (433)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~ 292 (433)
.+..++.+ ...++|-++...+|.+ |..-+.+... +..+.+++.+|.+....-...++...+|+.....+.+ .
T Consensus 34 gG~aw~~~~~~~~FN~HPvlMv~Gfi---~l~geAIL~Y-r~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn--~ 107 (231)
T PLN02810 34 GGLAWEATNKNLIFNLHPVLMLIGLI---IIGGEAIMSY-KSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHN--E 107 (231)
T ss_pred CcccccCCCCCceeeehHHHHHHHHH---HHhhHHHHHh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 44455433 2246777666655533 3222222222 3445456777888888888888888888866555543 3
Q ss_pred hhhhhcCCCchhhHHHHHHHHHHHhhhhccccccc
Q 013974 293 SQITLNMPPHAFASKVAVWTTVINPFTKYALLMNP 327 (433)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 327 (433)
..+.+-++-..|.-.....+..++-+..+-...+|
T Consensus 108 ~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 108 SGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred cCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444344344554444444445544444443444
No 128
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=28.86 E-value=4e+02 Score=27.93 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=37.1
Q ss_pred ccccchhHHHHh--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCHHHHHHHhhch
Q 013974 61 GVGLLSTPYTVK--EAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (433)
Q Consensus 61 G~Gil~lP~~~~--~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (433)
..++......+. +..+. .++.+++..+.+..+.+...+.- .++...+..+.+-.+|-
T Consensus 368 v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~--~~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 368 VLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETG--INPVSGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcC--CCcchhhhHHHHHHHHH
Confidence 334556666663 44455 66666677777777777777763 35566777777777764
No 129
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.62 E-value=4.1e+02 Score=23.46 Aligned_cols=109 Identities=14% Similarity=0.178 Sum_probs=58.0
Q ss_pred cccccCCCCccccccChhhhhhhHhhhcccccchhhHHhhccchh-hhHHHHHHHHHHHHHHHHHHHhHHHHhhcccchh
Q 013974 215 EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQGTLS 293 (433)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~ 293 (433)
++..++.+...++|-++....|.+... ....-+++..++++ +..|.+....-....+..++|+.....+-++.++
T Consensus 13 gG~~~~~~~~~Fn~HP~lM~~Gfi~l~----geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~ 88 (214)
T cd08764 13 GGFSWTGPGLQFNWHPLLMVLGLIFLY----GNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKP 88 (214)
T ss_pred CccccCCCCceEeecHHHHHHHHHHHH----HHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 444554433346777666655553321 11111222233333 3457788888777777788886554444444333
Q ss_pred hhhhcCCCchhhHHHHHHHHHHHhhhhccccccc
Q 013974 294 QITLNMPPHAFASKVAVWTTVINPFTKYALLMNP 327 (433)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 327 (433)
++.+-++-..+.-....++..++.+..+....+|
T Consensus 89 ~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 89 PIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544455455665556666666666555444445
No 130
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=27.94 E-value=6.2e+02 Score=25.28 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCHHHHHHHhhch-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013974 107 TTYPDIGEAAFGK-YGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (433)
Q Consensus 107 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~ 151 (433)
..+.++.+..+|. ++..+......+..+++..+++...+..+...
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 334 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAF 334 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888 66666677777777777788887777777544
No 131
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=27.35 E-value=4.3e+02 Score=23.21 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHHHHhhhhccccccchHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHhh--cc-------------
Q 013974 302 HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL--LP------------- 366 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--~p------------- 366 (433)
.+....-.+.....+...+.|...+-....+...+.+++++..........+........+.. .|
T Consensus 58 ~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~ 137 (215)
T PF00902_consen 58 TEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTS 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445555567778888899999998777776665554443222222222222222222222222 12
Q ss_pred ------cHHHHHHHHhHHHHHH--HHHhhHHHHHHHh
Q 013974 367 ------FFSLVMALIGSLLSIL--AIIMPSLCFIKIL 395 (433)
Q Consensus 367 ------~~~~v~~l~G~~~~~~--~~ilP~l~~l~~~ 395 (433)
++++.++++--+.... .|-+|.++....+
T Consensus 138 ~~~~~~~i~~y~~f~~~~~~~~gl~FqlPli~~~L~~ 174 (215)
T PF00902_consen 138 GIQPEPSISSYLNFVIQFLLIFGLIFQLPLIMFFLVR 174 (215)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444433 7779999888765
No 132
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=27.20 E-value=59 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcc
Q 013974 264 ALITCFALCVLIYGGVAVMGFLMFGQ 289 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy~~fg~ 289 (433)
+...++.+..++..+.|...|.+||.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCC
Confidence 34456666677777777778888884
No 133
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=26.95 E-value=6.7e+02 Score=25.36 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=44.9
Q ss_pred CCCCCchHHHHHHHHHHhhccccchhHHHHhhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCHHHHHHH
Q 013974 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEG---ITTYPDIGEA 115 (433)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G--~~-g~~~~l~~~~~~~~s~~~l~~~~~~~~~---~~~y~~l~~~ 115 (433)
.+|.=|+++-+..=....++.+...+..+.-+.| |. +++...+-- .++...+.- ...++ .-+++-..|.
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~---~~~~~f~~l--ns~~G~~yhIsFpv~sR~ 126 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGY---LFTAIFLVL--NSRPGSDYHISFPVLSRS 126 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHH---HHHHHHHHH--ccCCCcccccceeeeeee
Confidence 4555788888887777788888777777777788 45 555443321 122222222 22333 2466667777
Q ss_pred hhchhhh
Q 013974 116 AFGKYGR 122 (433)
Q Consensus 116 ~~G~~~~ 122 (433)
.||-++.
T Consensus 127 sFGiygS 133 (572)
T KOG2466|consen 127 SFGIYGS 133 (572)
T ss_pred ehhhhHh
Confidence 7776653
No 134
>CHL00020 psbN photosystem II protein N
Probab=26.50 E-value=53 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccc
Q 013974 264 ALITCFALCVLIYGGVAVMGFLMFGQG 290 (433)
Q Consensus 264 ~~~~~~~~~~~~y~~~g~~gy~~fg~~ 290 (433)
+...++.+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455566667777777777777888853
No 135
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=24.62 E-value=2e+02 Score=21.25 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred CccCCCCCchHHHHHHHHHHhhccccchhH
Q 013974 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTP 68 (433)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP 68 (433)
|.+.-.+.|++|.+.......+|.|+..+-
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455679999999999999988865544
No 136
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=24.40 E-value=4.3e+02 Score=26.67 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=82.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHhhhhccccCc-hhhHhHHH
Q 013974 119 KYGRLLISVLLYTELYSYCVE-FIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR-VISYLSAT 196 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~pl~~~~~~~-~l~~~s~~ 196 (433)
|-|.+++.+...+.+.+.+++ .-+..+.-+..++|.+.. ..+-.++..++..++.|=-++++-+ .+..++..
T Consensus 341 RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyin------IrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lssy 414 (572)
T KOG2466|consen 341 RAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYIN------IRRGALICAIIAWAICPWNLLSSSSKFLTALSSY 414 (572)
T ss_pred chhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEE------ecccHHHHHHHHHHhCchHHhccccHHHHHHHHH
Confidence 356677888888888887776 555666677778776421 1223344445566777776665543 44445554
Q ss_pred HHHHHHHHHHHhhhhcccccc--c------cCCCCccccccChhhhhhhHhhhcccccchhhHHhhccc----hhh----
Q 013974 197 GVVATILIVLCVLFLGTIEGI--G------FHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD----KTK---- 260 (433)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~----p~~---- 260 (433)
+++..-+..+.+.=+...... + .++.......+++ .--....|-.++.+++|-+..|... |+-
T Consensus 415 svfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~-NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~ 493 (572)
T KOG2466|consen 415 SVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGI-NWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKL 493 (572)
T ss_pred HHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCc-cHHHHHHHHhccccCCcchhhhcCcccccccceEEE
Confidence 433222111111111111111 1 1011111111211 2234567777889999999888753 331
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 013974 261 FTKALITCFALCVLIYGGVAV 281 (433)
Q Consensus 261 ~~~~~~~~~~~~~~~y~~~g~ 281 (433)
+--....+..+++..|..+..
T Consensus 494 yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 494 YYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred EechHHHHHHHHHHHHHHHHh
Confidence 123566788888888887643
No 137
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=24.29 E-value=7.2e+02 Score=24.79 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013974 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (433)
Q Consensus 109 y~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~ 151 (433)
..++.++.+|+++..++.+...+..+++..+++...+..+...
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~am 312 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSA 312 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999888888888888899999988888887655
No 138
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.96 E-value=5.4e+02 Score=26.03 Aligned_cols=46 Identities=15% Similarity=-0.060 Sum_probs=32.9
Q ss_pred hHhhhcccccchhhHHhhccchhhhHHHHHHHHHHHHHHHHHHHhH
Q 013974 237 IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVM 282 (433)
Q Consensus 237 ~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~g~~ 282 (433)
++.|+.+--+.-.-+..|+-+|+.++.+...+..+..+.-..++..
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666677888888888888888887777777776654
No 139
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=23.76 E-value=5.3e+02 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=23.5
Q ss_pred hhHhhhhhHhHHHHHHHHHhHHHHHHHHHhh
Q 013974 402 TQIVSSTAIAVLGVICAILGTFSSVAKIAEN 432 (433)
Q Consensus 402 ~~~~~~~~~~~~g~~~~v~gt~~~i~~~i~~ 432 (433)
|.-+..-++..+|.+....|+=..+.++++.
T Consensus 162 ~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~~ 192 (308)
T PF06166_consen 162 WAAILPQLLAALGAVFTAAGVGDVIASLVSS 192 (308)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHh
Confidence 3445566788899999988888888887765
No 140
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=23.67 E-value=4.3e+02 Score=21.93 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 013974 259 TKFTKALITCFALCVLIYGGVAVMGFL 285 (433)
Q Consensus 259 ~~~~~~~~~~~~~~~~~y~~~g~~gy~ 285 (433)
||+++-+.........+|+.+++..|.
T Consensus 1 ~r~~~~i~~~~l~~~~~fl~~al~sy~ 27 (171)
T PF13491_consen 1 ERRKREILGIALLLLALFLLLALISYS 27 (171)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356667777777888889999998884
No 141
>COG3817 Predicted membrane protein [Function unknown]
Probab=23.36 E-value=3e+02 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.1
Q ss_pred hhHhhhhhHhHHHHHHHHHhHHHHHHHHHhhC
Q 013974 402 TQIVSSTAIAVLGVICAILGTFSSVAKIAENY 433 (433)
Q Consensus 402 ~~~~~~~~~~~~g~~~~v~gt~~~i~~~i~~~ 433 (433)
|.-+..-.+..+|.+....|.-..+..++++|
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~ 197 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLISEI 197 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55556667889999999999888888887653
No 142
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.90 E-value=3.6e+02 Score=20.84 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHHhcc
Q 013974 383 AIIMPSLCFIKILGR 397 (433)
Q Consensus 383 ~~ilP~l~~l~~~~~ 397 (433)
.-.+++++.....++
T Consensus 36 aV~lasl~~~~~~~~ 50 (108)
T PF11345_consen 36 AVFLASLLILGIQHG 50 (108)
T ss_pred HHHHHHHHHHHHhcc
Confidence 444445555554433
No 143
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=3.9e+02 Score=21.19 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHhhccccchhHHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh--hCCCCCCHHH
Q 013974 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE--SKEGITTYPD 111 (433)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~l~~~~~~~~s~~~l~~~~~--~~~~~~~y~~ 111 (433)
.+|.+....+- -+|.++++... +.|.. +.+..++.-....|+..++.+-+. +..+...|+|
T Consensus 36 l~wl~~~vllg--~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~~pyDD 99 (126)
T COG5264 36 LSWLSVTVLLG--GLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSAGPYDD 99 (126)
T ss_pred HHHHHHHHHHH--HHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 56666555443 36666665554 77777 666666666667777777665332 3444456655
No 144
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=21.41 E-value=2.7e+02 Score=24.17 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=35.6
Q ss_pred HhHHHH-HHHHHhhHHHHHHHhccc----------cchhhHhhhhhHhHHHHHHHHHhHHHHHHHHHh
Q 013974 375 IGSLLS-ILAIIMPSLCFIKILGRK----------ATRTQIVSSTAIAVLGVICAILGTFSSVAKIAE 431 (433)
Q Consensus 375 ~G~~~~-~~~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~gt~~~i~~~i~ 431 (433)
.|++.+ .+..++|+.+.+..++++ .++.+-........+|++...+....+...+.+
T Consensus 50 f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 50 FGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444 448889999998887652 122333455666677777777777666666543
No 145
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=2.1e+02 Score=22.14 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=20.8
Q ss_pred HHHHHhhccccchhHHHHhhhcHHHHHHHHHHHHHH
Q 013974 54 NGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC 89 (433)
Q Consensus 54 ~l~~~~iG~Gil~lP~~~~~~G~~g~~~~l~~~~~~ 89 (433)
.+.+.++|+++=-+-=-|..+..+|.+.+++.++..
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445667777754444445566666666666655543
No 146
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=20.30 E-value=2.4e+02 Score=22.46 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhhccccchhHHHHhhhcHH--HHHHHHHHH
Q 013974 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFA 86 (433)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~--g~~~~l~~~ 86 (433)
++.+..--+.++++=+ -+++|..++++|.+ |.-.+...+
T Consensus 65 ~~idlA~FlTg~~vvs-~falPiVl~ha~lI~~gAc~l~~tg 105 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVS-AFALPIVLAHAGLIGWGACALVLTG 105 (131)
T ss_pred HHHHHHHHHhcchhhh-hhhhHHHHHHhhHhhhhhhhhhhcC
Confidence 5666666665555544 47999999999988 444444555
No 147
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.08 E-value=8.9e+02 Score=24.42 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013974 110 PDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (433)
Q Consensus 110 ~~l~~~~~G~~~~~~~~~~~~~~~~~~~~~y~i~~~~~l~~~ 151 (433)
.+.+++.+|.+. +.+-+...+.++|..-+.+...+.++..-
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ 316 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAG 316 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 467888999988 88888888888887777776666666543
Done!