BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013975
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Mus musculus GN=Adat3 PE=2 SV=1
Length = 349
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
E + PY+CTGYD+Y+ EPCVMCAMALVH RI+R+FY P+P+ GALG++ R+ LN
Sbjct: 270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTLFRVHARPDLN 328
Query: 396 HHYAVFRVLL 405
H + VFR +L
Sbjct: 329 HRFQVFRGIL 338
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVA---PLENLRHVKRIQ 59
+WQ + P + Q V + + P L SR L +V+ PL H+KR++
Sbjct: 25 QWQAL-----PVLSEQQSGAVELILAYAAPVLDKRQTSRLLREVSAVYPLPAQPHLKRVR 79
Query: 60 KKFLEGGKTQLSMILCLADENDNRMNSLPQDVQEL-----VNSYQL-SPFITKVCKNAAL 113
GG ++LCLA + P+ + EL V+ L +PF+ V L
Sbjct: 80 PSRSAGGAQSSDLLLCLAGPSAG-----PRSLAELLPRPAVDPRGLGTPFLVPVPARPPL 134
Query: 114 SKEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGDGSIVNA 171
++ ++EE WPTS+H + G F+ + ++ + M+ AV AQ + A
Sbjct: 135 TRSQFEEARAHWPTSFHEDKQVTSALAGQLFSTQERAAMQTHMERAVCAAQRAAAQGLRA 194
Query: 172 --AVIVDPSIKQEIASACDQICCCSIST 197
AV+VDP+ + +A+ D C S+++
Sbjct: 195 VGAVVVDPASDRVLATGHD---CSSVAS 219
>sp|Q561R2|ADAT3_RAT Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Rattus norvegicus GN=Adat3 PE=2 SV=1
Length = 349
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
E + PY+CTGYD+Y+ EPCVMCAMALVH RI+R+FY P+P+ GALG+ R+ LN
Sbjct: 270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTRFRVHARPDLN 328
Query: 396 HHYAVFRVLL 405
H + VFR +L
Sbjct: 329 HRFQVFRGIL 338
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 25/216 (11%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVA---PLENLRHVKRIQ 59
+WQ + P + Q V + + P L SR L +V+ PL H+KR++
Sbjct: 25 QWQAL-----PVLSEQQSGAVELVLAYAAPVLDKRQTSRLLREVSAVYPLPAQPHLKRVR 79
Query: 60 KKFLEGGKTQLSMILCLADENDNRMNSLPQDVQEL-----VNSYQL-SPFITKVCKNAAL 113
GG ++LCLA + P+ + EL V+ L +PF+ V L
Sbjct: 80 PSRSAGGAHSSDLLLCLAGPSAG-----PRSLAELLPRPAVDPRGLGTPFLVPVPARPPL 134
Query: 114 SKEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGDGSIVNA 171
++ ++EE WPTS+H + G F+ ++ + M+ AV AQ + A
Sbjct: 135 TRSQFEEARAHWPTSFHEDKQVTSALAGQLFSAQARAAMQTHMERAVRAAQRAAAQGLRA 194
Query: 172 --AVIVDPSIKQEIASACDQICCCSISTEKNSLESC 205
AV+VDP+ +A+ D CC S +++ C
Sbjct: 195 VGAVVVDPASDHVLATGHD--CCSEASPLLHAVMVC 228
>sp|Q96EY9|ADAT3_HUMAN Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Homo sapiens GN=ADAT3 PE=1 SV=1
Length = 351
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 255 NSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQK 314
H SC +PL HA + + L+ G G G + +P + A
Sbjct: 210 TGHDCSCADNPLLHAVMVCVD-------LVARGQG------RGTYDFRPFPACSFAPAAA 256
Query: 315 TDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 374
+LD G PYLCTGYD+Y+ EPC MCAMALVH RI R+FY
Sbjct: 257 PQAVRAGAVRKLDADEDGL------PYLCTGYDLYVTREPCAMCAMALVHARILRVFYGA 310
Query: 375 PNPNEGALGSVHRLQGEKSLNHHYAVFRVLL 405
P+P+ GALG+ R+ LNH + VFR +L
Sbjct: 311 PSPD-GALGTRFRIHARPDLNHRFQVFRGVL 340
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 33/235 (14%)
Query: 4 WQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVA---PLENLRHVKRIQK 60
WQ + P + Q V + + P L SR L +V+ PL H+KR++
Sbjct: 26 WQAL-----PVLSEKQSGDVELVLAYAAPVLDKRQTSRLLKEVSALHPLPAQPHLKRVRP 80
Query: 61 KFLEGGKTQLSMILCLADENDNRMNSLPQDVQEL-----VNSYQLS-PFITKVCKNAALS 114
G L M+LCLA S P+ + EL V+ L PF+ V L+
Sbjct: 81 SRDAGSPHALEMLLCLAGP-----ASGPRSLAELLPRPAVDPRGLGQPFLVPVPARPPLT 135
Query: 115 KEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGDGSIVN-- 170
+ ++EE WPTS+H + G F+ + ++ S M+ AV A+ +
Sbjct: 136 RGQFEEARAHWPTSFHEDKQVTSALAGRLFSTQERAAMQSHMERAVWAARRAAARGLRAV 195
Query: 171 AAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 225
AV+VDP+ + +A+ D C C+ + +++ C DL + G+ T
Sbjct: 196 GAVVVDPASDRVLATGHD--CSCADNPLLHAVMVC--------VDLVARGQGRGT 240
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 395
E+ PY+CTGYD+Y+ EPCVMCAMALVH RI R+FY + +GA GS +++ +K LN
Sbjct: 258 ETGLPYICTGYDLYVTREPCVMCAMALVHSRISRVFYG-ASTADGAFGSRYKIHCQKDLN 316
Query: 396 HHYAVFRVLL 405
H + VF+ ++
Sbjct: 317 HRFEVFKGVM 326
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 2 DKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISR---RLNQVAPLENLRHVKRI 58
D W+++ P + Q + + P L SR L+ + PL NL+H+KR+
Sbjct: 16 DTWEVL-----PVLSDEQSQDPELLPAYAAPILERRETSRLVKELSLIHPLPNLQHIKRV 70
Query: 59 QKKFLEGGKTQLSMILCLADE---NDNRMNSLPQDVQ-ELVNSYQLS-PFITKVCKNAAL 113
+ + L +I+CL + D + +L + + NS L PFI ++ N L
Sbjct: 71 RPCKHKDSPHPLEVIVCLVSDVQCTDPKKVTLSHLLHTQCFNSNGLGDPFIVQIPANPPL 130
Query: 114 SKEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGD--GSIV 169
++ ++E+ K WPTS+H + G F + +M AV+ A+SG G
Sbjct: 131 TRPQFEKASKHWPTSFHEDKLVTFALKGQLFTAHQKTKMREYMCVAVKAAKSGRELGMDA 190
Query: 170 NAAVIVDPSIKQEIASACD 188
AVIVDP +Q IA A D
Sbjct: 191 VGAVIVDPKTEQIIAVAHD 209
>sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subunit TAD3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD3 PE=1
SV=1
Length = 322
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 336 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGAL----GSVHRLQGE 391
E A YLC YD+YL EPC MC+MAL+H R+RR+ + G+L G + +
Sbjct: 235 EDANSYLCLDYDVYLTHEPCSMCSMALIHSRVRRVVFLTEMQRTGSLKLTSGDGYCMNDN 294
Query: 392 KSLNHHYAVFR 402
K LN Y F+
Sbjct: 295 KQLNSTYEAFQ 305
>sp|Q9P7N4|TAD3_SCHPO tRNA-specific adenosine deaminase subunit tad3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad3 PE=3 SV=1
Length = 315
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 400
YLC + + EPCVMC+M L+H RIRR+ Y P G + S++ + LNH Y
Sbjct: 239 YLCKDLTVVMTHEPCVMCSMGLLHSRIRRLIYCKKQPLTGGIESLYGIHWRAELNHRYLA 298
Query: 401 F 401
+
Sbjct: 299 Y 299
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 22 TVNVFASMVEPKLANTIISRRLNQV--APLENLRHVKRIQKKFLEGGKTQLSMILCLADE 79
T NV+ + EPK A+ + ++ + Q+ E+L H R+++ E G +L +I+C E
Sbjct: 37 TENVWIACFEPKYASKV-TQYVKQIRSKQKESLLHCNRLRRIQDENGSLELQIIIC--PE 93
Query: 80 NDNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGI 139
N + +D ++L ++ F+ V L+ E++ E +WP SY D
Sbjct: 94 KSMTANEIGKDFEDLGIVSKMI-FLYAVPAFPPLTDEQFHEWNSVWPVSYRKHVQRQD-- 150
Query: 140 PGFNEDDSQSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQ 189
F + + I S ++ + A + G I AA I DP+ +A + D+
Sbjct: 151 -VFTVHELKRIESILEDLINAAGASHKHGEIGCAAAIYDPTTDTVLAVSVDE 201
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 344 TGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNH 396
+ YDIY+ EPC MCA A+ H R++R+FY + GA+ S R K+ H
Sbjct: 67 SDYDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNLRYFNSKACFH 119
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2
Length = 144
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 346 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 384
YDIY+ EPC MCA A+ H R++R+FY + GA+ S
Sbjct: 69 YDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVES 107
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0819 PE=3 SV=1
Length = 148
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 346 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 384
YDIY+ EPC MCA A+ H R++R+FY + +GA+ S
Sbjct: 69 YDIYVTLEPCAMCASAISHSRLKRLFYGASDSKQGAVES 107
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 346 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 384
YDIY+ EPC MCA A+ H R++R+FY + G + S
Sbjct: 69 YDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGVVES 107
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 346 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 384
YDIY+ EPC MCA A+ H R++R+FY + GA+ S
Sbjct: 69 YDIYVTLEPCAMCASAISHSRLKRLFYGASDSKHGAVES 107
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+Y+ EPC MCA A++H RI+R+ + + GA+GS + +NH V +L +
Sbjct: 84 LYVTLEPCTMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFDDYKMNHTLEVTSGVLAE 143
Query: 408 E 408
E
Sbjct: 144 E 144
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 400
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 401 FRVLLPKEI---------LNKNEVVAARTSTTNTN 426
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 400
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 401 FRVLLPKEI---------LNKNEVVAARTSTTNTN 426
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 400
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 401 FRVLLPKEI---------LNKNEVVAARTSTTNTN 426
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 400
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 401 FRVLLPKEI---------LNKNEVVAARTSTTNTN 426
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+Y+ EPCVMCA A+VH RI R+ + + GA GS+ + +NH + +L
Sbjct: 80 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRD 139
Query: 408 E 408
E
Sbjct: 140 E 140
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+Y+ EPCVMCA A+VH RI R+ + + GA GS+ + +NH + +L
Sbjct: 80 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRD 139
Query: 408 E 408
E
Sbjct: 140 E 140
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 345 GYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNH 396
G ++Y+ EPC+MC+ ALV RI ++ ++ + G + SV + E +LNH
Sbjct: 72 GCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNH 123
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 345 GYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL 404
G +Y+ EPC MCA A+V R+ ++ + +P G G++ L E+ NH V +
Sbjct: 73 GATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGV 132
Query: 405 LPKE 408
L +E
Sbjct: 133 LEEE 136
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+++ EPCVMC+ A+ RI + Y N G + S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAA 139
Query: 408 EILN 411
+ N
Sbjct: 140 DCAN 143
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+Y+ EPC+MCA AL I+ +++ N G GSV + ++S++ Y V+ L
Sbjct: 289 LYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFGGCGSVFSINKDQSIDPSYPVYPGLFYS 348
Query: 408 E 408
E
Sbjct: 349 E 349
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388
YL TG + + EPC MC A + R+ RI Y NP GALG V L
Sbjct: 446 YL-TGCTLVVTLEPCPMCLGAALEARVERIVYGASNPKAGALGGVSDL 492
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 408 EILN 411
+ N
Sbjct: 140 DCAN 143
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 408 EILN 411
+ N
Sbjct: 140 DCAN 143
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 408 EILN 411
+ N
Sbjct: 140 DCAN 143
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 407
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 408 EILN 411
+ N
Sbjct: 140 DCAN 143
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 340 PYL--CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388
PYL CT + + EPC MC A + RI I Y NP GALG V L
Sbjct: 470 PYLSDCT---LVVTLEPCPMCLGAALEARIGHIVYGAANPKAGALGGVSDL 517
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 339 RPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388
R + +Y+ EPC MCA A++ R+ + + PN GA GS RL
Sbjct: 1173 RSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRL 1222
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 342 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385
+C +Y+ EPC+MCA AL RI + Y N G GSV
Sbjct: 93 VCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSV 136
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385
+Y+ EPC+MCA AL RI + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137
>sp|B7K1U3|BIOB_CYAP8 Biotin synthase OS=Cyanothece sp. (strain PCC 8801) GN=bioB PE=3
SV=1
Length = 368
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 352 WEPCVMCAMALVHQRIRRIFYAFPNPNEGA-LGSVHRLQGEKSLNHHYAVFRVLLPKEIL 410
WE V A+AL + + NP EG LG HRL ++L A+FR++LP++IL
Sbjct: 245 WEDRVDLALALRELGVESVPINLLNPREGTPLGDCHRLDPFEALKA-IAIFRLILPQQIL 303
Query: 411 N 411
Sbjct: 304 R 304
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 391
+Y+ EPC+MCA AL +I + Y N G GSV + G+
Sbjct: 88 LYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVSGD 131
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 391
+Y+ EPC+MCA AL +I + Y N G GSV + G+
Sbjct: 83 LYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVAGD 126
>sp|A8FJ14|DEOC_BACP2 Deoxyribose-phosphate aldolase OS=Bacillus pumilus (strain
SAFR-032) GN=deoC PE=3 SV=1
Length = 223
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 51 NLRHVKRIQ-KKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVNSYQLSPFITKVCK 109
N VK + K +E G T++ M++ +A D +++ QD++ +V++ + + + +
Sbjct: 68 NTTAVKAFETKDAIENGATEVDMVINIAALKDGEYDAVEQDIRAVVDAAKGKALVKVIIE 127
Query: 110 NAALSKEEWEEQCKL 124
L+ EE + C+L
Sbjct: 128 ACLLTDEEKVKACEL 142
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385
+Y+ EPC+MCA AL +I + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385
+Y+ EPC+MCA AL +I + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYA 373
+Y+ EPC+MC A++H RI R+ +
Sbjct: 77 LYVTLEPCIMCYGAIIHSRISRLVFG 102
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1
SV=1
Length = 250
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 348 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385
+Y+ EPC+MCA AL I ++ + N G G+V
Sbjct: 81 LYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGNGTV 118
>sp|Q892U4|DEOC_CLOTE Deoxyribose-phosphate aldolase OS=Clostridium tetani (strain
Massachusetts / E88) GN=deoC PE=3 SV=1
Length = 216
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 26 FASMVEPKLANTIISRRLNQVAPL-ENLRHVKRIQ-KKFLEGGKTQLSMILCLADENDNR 83
+ S+V +L T + + PL N + VK + K+ +E G ++ M++ + D +
Sbjct: 42 YTSLVSKELQGTDVKTCVVIGFPLGANTKEVKAFETKQAIENGAKEVDMVINIGALKDKK 101
Query: 84 MNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKL 124
+ + +D++ +VN + + + + L+ EE + C++
Sbjct: 102 YDVVKEDIEAVVNEAKGKALVKVIIETCLLTDEEKVKACEI 142
>sp|Q9ZCC4|ZNUC_RICPR Zinc import ATP-binding protein ZnuC OS=Rickettsia prowazekii
(strain Madrid E) GN=znuC PE=3 SV=1
Length = 233
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKF 62
K +I ++P K + + TV F ++ P N + + +++ +L H+K+ +
Sbjct: 67 KLKIGYVPQKFGLTTDIPITVKKFLDLLAPSHFN----KNIKEISSFIDLEHIKKQEISK 122
Query: 63 LEGGKTQLSMILCLADEN------DNRMNSLPQDVQELVNSYQLSPFITK 106
L GG+ Q ++ C N D + SL DV YQL FI K
Sbjct: 123 LSGGQFQKVVLACSIINNPDLIILDEPLQSL--DVTSQQEFYQLIHFIRK 170
>sp|Q58762|WTPC_METJA Molybdate/tungstate import ATP-binding protein WtpC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=wtpC PE=3
SV=1
Length = 297
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 2 DKWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKK 61
+K + ++P A+ PN+ N+ ++ K+ I R++ ++A N+ H+ K
Sbjct: 69 EKRNVGYVPQNYALFPNKNVYKNIAYGLIIKKVNKLEIDRKVKEIAEFLNISHLLNRDVK 128
Query: 62 FLEGGKTQ 69
L GG+ Q
Sbjct: 129 TLSGGEQQ 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,869,600
Number of Sequences: 539616
Number of extensions: 6948179
Number of successful extensions: 17956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 17899
Number of HSP's gapped (non-prelim): 59
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)