BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013976
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 196/353 (55%), Gaps = 17/353 (4%)
Query: 45 GPGIYNITTLDE---AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNP 101
GPG TTL + AE ++ S V+G+ + ++ A+ DD+ F T+N
Sbjct: 13 GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNS 72
Query: 102 DVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
DV + LD + +V+ KK E + F +G+ K + DF+ N+LPLV FT + A
Sbjct: 73 DVFSKYQLD----KDGVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 127
Query: 162 PSVFESPIKNQLLLF---AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 218
P +F IK +LLF +VS D + L F+ AA+SFKGK++F+++ D+ D + + E
Sbjct: 128 PKIFGGEIKTHILLFLPKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILE 185
Query: 219 YFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPET 276
+FG+ E P V T ++ K+ + E LT ++I F FLEGK+KP S +PE
Sbjct: 186 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED 245
Query: 277 NDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
D VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIA
Sbjct: 246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 305
Query: 336 KMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
KMD T NE K FPT+ FFPA I+ + +RT+ KFL+
Sbjct: 306 KMDSTANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLESGGQ 357
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 196/387 (50%), Gaps = 37/387 (9%)
Query: 32 SKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLE 90
+ D IV+ +KK+ GP + T +E ++ ++ + ++G+ + S + SE L AS L
Sbjct: 96 TADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLR 155
Query: 91 DDVNFYQTTNPDVAKIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 147
D+ F T + + + + + RP+ + K E + ++Y + K I F+
Sbjct: 156 DNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAY-TEQKMTSGKIKKFIQE 214
Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLFAVSN-DSEKLLPVFEEAAKSFKGKLIFV--- 203
N + T +N + I+ + LL A + D EK + + ++ +++ V
Sbjct: 215 NIFGICPHMTEDN-----KDLIQGKDLLIAYYDVDYEKNA----KGSNYWRNRVMMVAKK 265
Query: 204 ---------YVQMDNEDVGKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD- 250
+ + +S+ FG+ GE P V T +K ++ E + D
Sbjct: 266 FLDAGHKLNFAVASRKTFSHELSD-FGLESTAGEIPVVAIRTAK--GEKFVMQEEFSRDG 322
Query: 251 -KIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWC 309
++ F +D+ +G LK + KS+PIPE+NDG VK+VV NFDEIV +E+KDVL+E YAPWC
Sbjct: 323 KALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWC 382
Query: 310 GHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPI 368
GHC+ EP Y +L + L +IVIAKMD T N+ + GFPTI F PA NK +P
Sbjct: 383 GHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPK 441
Query: 369 NVDVDRTVVALYKFLKKNASIPFKIQK 395
+ R + +L++ A+ P IQ+
Sbjct: 442 KYEGGRELSDFISYLQREATNPPVIQE 468
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 280 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
DV + +NF+ + D +L+E +APWCGH + P Y A L+G+ + +AK+
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 338 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN---ASIPFK 392
D T TN ++ G+PT+ F G ++ D RT + LKK AS+P +
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQAGPASVPLR 116
Query: 393 IQK 395
++
Sbjct: 117 TEE 119
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 260 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY 319
+G LK + KS+PIPE+NDG VK+VV NFDEIV +E+KDVL+E YAPWCGHC+ EP Y
Sbjct: 8 FDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKY 67
Query: 320 NKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 378
+L + L +IVIAKMD T N+ + GFPTI F PA NK +P + R +
Sbjct: 68 KELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPA-NKKLNPKKYEGGRELSD 126
Query: 379 LYKFLKKNAS 388
+L++ A+
Sbjct: 127 FISYLQREAT 136
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 45/280 (16%)
Query: 124 ETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSE 183
+ E + YF G+ D S A +V S LPL +F ND E
Sbjct: 216 QVEALPYF--GEIDGSVFAQYVESG-LPLGYLFY----------------------NDEE 250
Query: 184 KL---LPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 240
+L P+F E AK +G + FV +D G+ + + P + +D K
Sbjct: 251 ELEEYKPLFTELAKKNRGLMNFV--SIDARKFGRHAGN-LNMKEQFPLFAIHDMTEDLKY 307
Query: 241 HI----------LDGELTLDK--IKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNN 288
+ L ++ L+ I++ +DFL+G P KS I E D V +VG N
Sbjct: 308 GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKN 367
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHHRA 347
DEIV D KDVL+ YAPWCGHC+ PTY +LA + ++IAK+D T N+
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV 427
Query: 348 KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
+G+PTI+ +P G KS + + R++ +L+ F+K+N
Sbjct: 428 VIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENG 466
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 278 DGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
D V + ++F+E + +S D VL E +APWCGHC+ P Y K A+ L +I +A+
Sbjct: 13 DSAVVKLATDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQ 69
Query: 337 MDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388
+D T N+ + + GFP++ F + + + I+ + RT A+ +F+ K +
Sbjct: 70 IDCTENQDLCMEHNIPGFPSLKIFKNSDVN-NSIDYEGPRTAEAIVQFMIKQSQ 122
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
+ G VK+VVG FD IV+D KDVL+E YAPWCGHC+ EP Y L K +G +VIAK
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAK 64
Query: 337 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKNASIPFKI 393
MD T N+ + + K +GFPTI F P+G+K +PI + +R + L KF+ ++A+ +
Sbjct: 65 MDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATKRSRT 123
Query: 394 QKPTSAPKT 402
++ S P +
Sbjct: 124 KEELSGPSS 132
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 12/219 (5%)
Query: 57 AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 116
AE ++ S V+G+ + ++ A+ DD+ F T+N DV + LD +
Sbjct: 17 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 72
Query: 117 ALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF 176
+V+ KK E + F +G+ K + DF+ N+LPLV FT + AP +F IK +LLF
Sbjct: 73 GVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLF 131
Query: 177 ---AVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG-EAPKVLAY 232
+VS D + L F+ AA+SFKGK++F+++ D+ D + + E+FG+ E P V
Sbjct: 132 LPKSVS-DYDGKLSNFKTAAESFKGKILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLI 189
Query: 233 TGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKS 270
T ++ K+ + ELT ++I F FLEGK+KP S
Sbjct: 190 TLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMS 228
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---D 330
P ++G V +VV N++EIVLD++KDVL+E YAPWCGHC+A P Y +L D
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 331 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
+VIAK+D T N+ + GFPTI +PAG K P+ RTV L KF+ +N
Sbjct: 62 RVVIAKVDATANDVPD-EIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENG 116
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
G VK++VG NF+++ DE K+V +E YAPWCGHC+ P ++KL + + ++IVIAKMD
Sbjct: 7 GPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 66
Query: 339 GTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 384
T NE K FPT+ FFPA I+ + +RT+ KFL+
Sbjct: 67 STANEVEAVKVHSFPTLKFFPASADR-TVIDYNGERTLDGFKKFLE 111
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 148 NKLPLVTIFTRENAPSVFESPIKNQLLLF--AVSNDSEKLLPVFEEAAKSFKGKLIFVYV 205
N+LPLV FT + AP +F IK +LLF +D + L F+ AA+SFKGK++F ++
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 206 QMDNEDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGK 263
D+ D + + E+FG+ E P V T ++ K+ + ELT ++I F FLEGK
Sbjct: 71 DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 129
Query: 264 LKPFFKSDPIPETND 278
+KP S +PE D
Sbjct: 130 IKPHLMSQELPEDWD 144
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDG 339
V ++ NFD V D+ VLLE YAPWCGHC+ F P Y K+A L+ D I +AK+D
Sbjct: 19 VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA 77
Query: 340 TTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRT 375
T+ +K D G+PTI G ++ D RT
Sbjct: 78 TSASMLASKFDVSGYPTIKILKKGQA----VDYDGSRT 111
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 266 PFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
P D + + V ++ NFD V D+ VLLE YAPWCGHC+ F P Y K+A
Sbjct: 2 PLGSEDDLEVKEENGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANI 60
Query: 326 LRGVD-SIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGN 362
L+ D I +AK+D T+ ++ D G+PTI G
Sbjct: 61 LKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 283 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT- 340
++ NFDE+V D + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T
Sbjct: 134 VLTKENFDEVVND-ADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 341 -TNEHHRAKSDGFPTILFFPAGN 362
T+ R G+PT+ F G
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGR 215
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 267 FFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL 326
F+ SDP + + +FD+ + + + L+E YAPWCGHC+ T+ K AK L
Sbjct: 12 FYDSDP-------HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Query: 327 RGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFF 358
GV + D N+ AK D GFPT++ F
Sbjct: 65 DGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV--DSIVIAK 336
GDV + ++FD+ VLD ++E YAPWCGHC+ EP + A ++ + +A
Sbjct: 7 GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 337 MDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 375
+D T N+ R GFPTI F G P++ D RT
Sbjct: 67 VDATVNQVLASRYGIRGFPTIKIFQKGES---PVDYDGGRT 104
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 274 PETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS-I 332
PE D V ++ +NF E L K +L+E YAPWCGHC+A P Y K A L+ S I
Sbjct: 3 PEEED-HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 333 VIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385
+AK+D T ++ + G+PTI FF G+ + P R + +LKK
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAGREADDIVNWLKK 114
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIA 335
+ G V + NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA
Sbjct: 5 SSGTVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 62
Query: 336 KMDGTTNEHHRAKSD--GFPTILFFPAGNK 363
++D T + +K G+PT+L F G K
Sbjct: 63 EVDCTAERNICSKYSVRGYPTLLLFRGGKK 92
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHL-RGVDSIVIAKMDGT--TNE 343
+NFD++V + + +L+E YAPWCGHC+ P Y K AK L + I +AK+D T T+
Sbjct: 15 DNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDL 73
Query: 344 HHRAKSDGFPTILFFPAGNKSFD 366
R G+PT+ F G + FD
Sbjct: 74 AKRFDVSGYPTLKIFRKG-RPFD 95
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 345
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T +
Sbjct: 13 NNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 70
Query: 346 RAKSD--GFPTILFFPAGNK 363
+K G+PT+L F G K
Sbjct: 71 CSKYSVRGYPTLLLFRGGKK 90
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHH 345
NNFD+ + + ++ YAPWCGHC+ PT+ +L+ K G+ + IA++D T +
Sbjct: 8 NNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI 65
Query: 346 RAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
+K G+PT+L F G K + R + +L++F+ A
Sbjct: 66 CSKYSVRGYPTLLLFRGGKKVSEHSG---GRDLDSLHRFVLSQA 106
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 280 DVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
DV + +NF+ + D +L+E +APWCGHC+ P Y A L+G+ + +AK+
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKV 59
Query: 338 DGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387
D T TN ++ G+PT+ F G ++ D RT + LKK A
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAG---AYDGPRTADGIVSHLKKQA 108
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
++ DV + +NF+ V+ L+E YAPWCGHCQ P + K A L+ V +
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAV 73
Query: 336 KMDGTTNEHHRAKSDGFPTILFFPAG-NKSFD 366
D + + GFPTI F A NK D
Sbjct: 74 NADKHQSLGGQYGVQGFPTIKIFGANKNKPED 105
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V NF++ VL K VL++ +APWCG C+ P +LAK G +V +D N
Sbjct: 6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 344 HHRAKSDGFPTILFFPAGN 362
+ PT+L F G
Sbjct: 66 AAQYGIRSIPTLLLFKNGQ 84
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 137 DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA--VSNDSEKLLPVFEEAAK 194
D + ++ F+ N L +VT + +F S I+ LLL S + E+ + +++AAK
Sbjct: 99 DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK 158
Query: 195 SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 254
F+GK++F+ V ++ GK +S + + P + Y DD + E++++ ++
Sbjct: 159 LFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQN 218
Query: 255 FGEDFLEGK 263
F + FL GK
Sbjct: 219 FCDGFLSGK 227
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
+V+ V +++ E VL+ V+++ +APWCG C+ P ++LAK G ++ D
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 340 TTNEHHRAKSDGFPTILFFPAGNK 363
+ PT+LFF G +
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGER 84
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
+++ E VL+ V+++ +APWCG C+ P ++LAK G ++ D +
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 347 AKSDGFPTILFFPAGNK 363
PT+LFF G +
Sbjct: 67 YNIRSIPTVLFFKNGER 83
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEHHRAKSD- 350
VL +E +A WCGHC AF PT+ LA+ ++ ++ +A +D + D
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 351 ---GFPTILFFPA 360
GFPT+ FF A
Sbjct: 86 NIPGFPTVRFFXA 98
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
+ F +VL+ S VL++ +APWCG C+ P +++A + V D + N
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 347 AKSDGFPTILFFPAGNKS 364
PTI+ F G K
Sbjct: 69 YGIRSIPTIMVFKGGKKC 86
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCGHC+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 280 DVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
DV +V+ NFDE++ + +K VL++ +A WC C +EP Y K+A+ +G V +++
Sbjct: 4 DVTLVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG--KAVFGRLN 60
Query: 339 GTTNEHHRAKSD--GFPTILFFPAG 361
N+ K PT L F G
Sbjct: 61 VDENQKIADKYSVLNIPTTLIFVNG 85
>pdb|2BJX|A Chain A, Protein Disulfide Isomerase
pdb|1BJX|A Chain A, Human Protein Disulfide Isomerase, Nmr, 24 Structures
Length = 110
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 57 AERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRP 116
AE ++ S V+G+ + ++ A+ DD+ F T+N DV + LD +
Sbjct: 11 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KD 66
Query: 117 ALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
+V+ KK E + F +G+ K + DF+ N+LPLV FT + A
Sbjct: 67 GVVLFKKFDEGRNNF-EGEVTKENLLDFIKHNQLPLVIEFTEQTA 110
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339
+V+ V +++ E VL+ V+++ +APWCG + P ++LAK G ++ D
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 340 TTNEHHRAKSDGFPTILFFPAGNK 363
+ PT+LFF G +
Sbjct: 61 APGIATQYNIRSIPTVLFFKNGER 84
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
N +E + K +++ YA WCG C+ P ++LAK G IVI K+D T E
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG--QIVIYKVD-TEKEQEL 84
Query: 347 AKSDG---FPTILFFPAGNK 363
A + G P+ILF P K
Sbjct: 85 AGAFGIRSIPSILFIPMEGK 104
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 63
Query: 344 H--HRAKSDGFPTILFFPAGN 362
R + PT++ F G
Sbjct: 64 KTAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V NFDE L + VL++ +A WC C+ P ++AK G +++AK+D N
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENP 62
Query: 344 H--HRAKSDGFPTILFFPAGN 362
R + PT++ F G
Sbjct: 63 KTAXRYRVXSIPTVILFKDGQ 83
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 29/247 (11%)
Query: 51 ITTLDEAERVLTSETKVVLGYLNSLVGSESEVLAD--ASRLEDDVNFYQTTNPDVAKIFH 108
I TL + + L VV+ + VG + A+ L +D F+ T + ++AK
Sbjct: 11 ILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFL- 69
Query: 109 LDSKVNRPALVMVKKETEKISYF-------ADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
KV+ LV+ + E + Y G + S I D+V + LPLV N
Sbjct: 70 ---KVSLGKLVLXQPEKFQSKYEPRXHVXDVQGSTEASAIKDYVVKHALPLVGHRKTSND 126
Query: 162 PSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI--------FVYVQMDNEDVG 213
+ K L++ S D + A + ++ K++ + + D ED
Sbjct: 127 AKRYS---KRPLVVVYYSVD---FSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYA 180
Query: 214 KPVSEYFGITGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKLKPFFKSDP 272
V + G++ V A ++ KK + E D ++ F F +GKLKP KS P
Sbjct: 181 TEVKD-LGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLKPVIKSQP 239
Query: 273 IPETNDG 279
+P+ N G
Sbjct: 240 VPKNNKG 246
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V ++FD VL +L++ +A WCG C+ P +++A +G ++ +D
Sbjct: 7 VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 344 HHRAKSDGFPTILFFPAG 361
+ G PT+L F G
Sbjct: 67 APKYGIRGIPTLLLFKNG 84
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A+ +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAGN 362
G PT+L F G+
Sbjct: 70 YGIRGIPTLLLFKNGD 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
F+E VL +++ YAPWCG CQ F P + LA+ ++G
Sbjct: 13 FNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG 52
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 20 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 79
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 80 YGIRGIPTLLLFKNG 94
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
+FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY 70
Query: 348 KSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 71 GIRGIPTLLLFKNG 84
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P + +A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 342
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 69
Query: 343 EHHRA-KSDGFPTILFFPAGN 362
E R + PT++ F G
Sbjct: 70 ETARNFQVVSIPTLILFKDGQ 90
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P ++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGVDSIVIAKMDGTTNEH--HRA 347
VL S +E +A WCGH AF PT+ +LA K R ++ + TN
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 348 KSDGFPTILFFPAGNKS 364
GFPT+ FF A K+
Sbjct: 86 NIAGFPTVRFFQAFTKN 102
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 71 YGIRGTPTLLLFKNG 85
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 342
V +F VL +K VL++ +A WCG C+ P ++A R D + +AK+D TN
Sbjct: 17 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 74
Query: 343 EHHRA-KSDGFPTILFFPAGN 362
E R + PT++ F G
Sbjct: 75 ETARNFQVVSIPTLILFKDGQ 95
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++F+ VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 27/252 (10%)
Query: 46 PGIYNITTLDEAERVLTSETKVVLGYLN-SLVGSESEVLADASRLEDDVNFYQTTNPDVA 104
P + T +E ++ ++ + ++G+ + S + SE L AS L D+ F T +
Sbjct: 6 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 105 KIFHLDSK---VNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161
+ + + + RP+ + K E + ++Y + K I F+ N + T +N
Sbjct: 66 NEYDDNGEGIILFRPSHLTNKFEDKTVAY-TEQKXTSGKIKKFIQENIFGICPHXTEDN- 123
Query: 162 PSVFESPIKNQLLLFAVSN-DSEKLLP--------VFEEAAKSFKGKLIFVYVQMDNEDV 212
+ I+ + LL A + D EK V A K + +
Sbjct: 124 ----KDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTF 179
Query: 213 GKPVSEYFGI---TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKLKPF 267
+S+ FG+ GE P V T +K + E + D ++ F +D+ +G LK +
Sbjct: 180 SHELSD-FGLESTAGEIPVVAIRTAK--GEKFVXQEEFSRDGKALERFLQDYFDGNLKRY 236
Query: 268 FKSDPIPETNDG 279
KS+PIPE+NDG
Sbjct: 237 LKSEPIPESNDG 248
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337
DG+V D+++ D+ V+ + +APWCG C++F P + + A G V
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVI-DFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
Query: 338 DGTTNEHHRAKSDGFPTILFFPAGNKSFDPIN 369
+ R + PTI + G K D +N
Sbjct: 96 EAEPALSTRFRIRSIPTIXLYRNG-KXIDXLN 126
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
+ G+V+++ N+ E++ D ++E YAPWC CQ +P + A+ ++ + IAK
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLE-VNIAK 60
Query: 337 MDGT 340
+D T
Sbjct: 61 VDVT 64
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
G +K V ++F++ VL K VL++ +A WCG C+ P+ +A D I I K++
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLN 62
Query: 339 GTTNEHHRAKSD--GFPTILFFPAG 361
N AK PT+ + G
Sbjct: 63 IDENPGTAAKYGVMSIPTLNVYQGG 87
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD ++ +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YIERGIPTLLLFKNG 84
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD+ VL S VL++ +A WCG C+ P ++ K G ++ +D +
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 347 AKSDGFPTILFFPAG 361
+ PT++ G
Sbjct: 70 YQVRSIPTLMLVRDG 84
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
PT+L F G
Sbjct: 70 YGIRSIPTLLLFKNG 84
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 277 NDGD----VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA---KHLRGV 329
NDG+ V + FD IV+D KDV + Y PW H A ++ L+ R
Sbjct: 9 NDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNH 68
Query: 330 DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386
+ V A++DG R + GFPT+ ++ +K +P R + + F+ +N
Sbjct: 69 LTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQ-EPFEYSGQRYLSLVDSFVFQN 126
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WC C+ P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
++FD VL +L++ +A WCG C+ P +++A +G ++ +D
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 69
Query: 346 RAKSDGFPTILFFPAG 361
+ G PT+L F G
Sbjct: 70 KYGIRGIPTLLLFKNG 85
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 246 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG 279
E+T + IK F +DF+ GK++P KS+PIPE +G
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG C+ +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 274 PETNDGDVKIVVGN--NFDEIVLDESKD----VLLEIYAPWCGHCQAFEPTYNKLAKHLR 327
P+ ++ G D +L ++ +L++ +APWCG C+ P + A L
Sbjct: 35 PKCGICGAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA 94
Query: 328 GVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNK 363
G + +AK+D T H R + G P + F G +
Sbjct: 95 G--QVRLAKID--TQAHPAVAGRHRIQGIPAFILFHKGRE 130
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG + P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WCG + P +++A +G ++ +D +
Sbjct: 30 DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 89
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 90 YGIRGIPTLLLFKNG 104
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ +D + K V+++ +A WCG C+ P K A+ + +D ++
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 73
Query: 346 RAKSDGFPTILFFPAGNK 363
+A+ PT++F+ G +
Sbjct: 74 KAEVSSMPTLIFYKGGKE 91
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ +D + K V+++ +A WCG C+ P K A+ + +D ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 66
Query: 346 RAKSDGFPTILFFPAGNK 363
+A+ PT++F+ G +
Sbjct: 67 KAEVSSMPTLIFYKGGKE 84
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN- 342
V +F VL +K VL++ +A WCG + P ++A R D + +AK+D TN
Sbjct: 14 VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATE-RATD-LTVAKLDVDTNP 71
Query: 343 EHHRA-KSDGFPTILFFPAGN 362
E R + PT++ F G
Sbjct: 72 ETARNFQVVSIPTLILFKDGQ 92
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 357
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK G +
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 358 F 358
F
Sbjct: 83 F 83
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 357
K V+L+++ WCG C+A P Y KLA+ ++ K+D AK G +
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 358 F 358
F
Sbjct: 95 F 95
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 291 EIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 348
E +++E+K ++++ +A WCG C+ P LAK + V+ AK+D NE AK
Sbjct: 11 EKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE---FAKVDVDQNEEAAAK 67
Query: 349 SD--GFPTILFFPAG 361
PT +F G
Sbjct: 68 YSVTAMPTFVFIKDG 82
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
VL + +APWCG C+ P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 358 FPAGN 362
G
Sbjct: 78 LKDGE 82
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 8 VTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDENP 63
Query: 344 HHRAKSD--GFPTILFFPAGN 362
AK + PT++ F G
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQ 84
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 360
L++ +APWCG C+ P +LA+ G +V +D R PT++ F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 361 G 361
G
Sbjct: 114 G 114
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
++FD VL +L++ +A WC + P +++A +G ++ +D +
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 347 AKSDGFPTILFFPAG 361
G PT+L F G
Sbjct: 70 YGIRGIPTLLLFKNG 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 344 HHRAKSD--GFPTILFFPAGN 362
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK--SD 350
V D K V++ Y+P C +C+A EP + + AK S V +++ TN K
Sbjct: 20 VEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQ 77
Query: 351 GFPTILFFPAGNKSFDPI 368
G PT FF G ++ +
Sbjct: 78 GTPTFKFFCHGRPVWEQV 95
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 357
K +++ YA WCG C+ P +L+K G I +D G PTI F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 358 FP 359
P
Sbjct: 112 VP 113
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V +FD V ES L++ +A WCG C+ P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 344 HHRAKSD--GFPTILFFPAGN 362
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK--MDGTTNE 343
G +F + V++ V+++ +A WCG C+ P K+ G +V+AK +D T+
Sbjct: 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG--KVVMAKVDIDDHTDL 77
Query: 344 HHRAKSDGFPTILFFPAGN 362
+ PT+L G+
Sbjct: 78 AIEYEVSAVPTVLAMKNGD 96
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 348
F+ VL + VL+ +A WCG CQ P N A +V ++D + K
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK 76
Query: 349 SDGFPTI 355
+G P +
Sbjct: 77 VEGVPAL 83
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG----F 352
+K V+++ YA WCG C+ P +L++ + V V K+D +E D
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDV---VFLKVD--VDECEDIAQDNQIACM 74
Query: 353 PTILFFPAGNK 363
PT LF G K
Sbjct: 75 PTFLFMKNGQK 85
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329
S+ I DGD++ ++ + ++K V+++ +A WCG C+ P + +L++ +
Sbjct: 13 SELIELKQDGDLESLLEQH-------KNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI 65
Query: 330 DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
V +D + PT + G K D + + + + KF+
Sbjct: 66 --FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N +
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTS 65
Query: 348 KSD--GFPTILFFPAG 361
+ PT++ F G
Sbjct: 66 QFGIMSIPTLILFKGG 81
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
G V+++ + + V K V+++ +A WCG C+ P + K++ G D + K+D
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG-DKVGFYKVD 73
Query: 339 GTTNEHHRAKSDG---FPTILFFPAGNK 363
+ A+ G PT +FF G K
Sbjct: 74 -VDEQSQIAQEVGIRAMPTFVFFKNGQK 100
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 286 GNNFDEIVLDESKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344
F+E++ ++K +L+ +APW C +LAK L V S V + +G
Sbjct: 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQV-SFVKLEAEGVPEVS 78
Query: 345 HRAKSDGFPTILFFPAGNK 363
+ + PT LFF K
Sbjct: 79 EKYEISSVPTFLFFKNSQK 97
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 21/91 (23%)
Query: 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGV---------DSIVIAKMDGTTNEHHRAKSDG 351
+ Y+P C HC PT+ + AK + G+ D ++ +M G +
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNS--------- 168
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALYKF 382
+P++ F +G + + DR+ +L F
Sbjct: 169 YPSLFIFRSG---MAAVKYNGDRSKESLVAF 196
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
NF + + + K VL++ +A WCG C+ P + A+ D + +AK++ N +
Sbjct: 9 NFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTS 65
Query: 348 KSD--GFPTILFFPAG 361
+ PT++ F G
Sbjct: 66 QFGIMSIPTLILFKGG 81
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ FD + + K V+++ YA WCG C+ P K ++ D + +D +
Sbjct: 8 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 65
Query: 346 RAKSDGFPTILFFPAGNK 363
+ + PT+L F G +
Sbjct: 66 KNEVSAMPTLLLFKNGKE 83
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ FD + + K V+++ YA WCG C+ P K ++ D + +D +
Sbjct: 14 ASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 71
Query: 346 RAKSDGFPTILFFPAGNK 363
+ + PT+L F G +
Sbjct: 72 KNEVSAMPTLLLFKNGKE 89
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPT 354
K V+L+ +A WCG C+ P +L+ D++V+ K+D E + + PT
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPT 77
Query: 355 ILFFPAGNK 363
+F G K
Sbjct: 78 FVFLKNGVK 86
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 289 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
F+E VL +++ YAPW G Q F P + LA+ ++G
Sbjct: 667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG 706
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTI 355
K V+L+ +A WCG C+ P +L+ D++V+ K+D E + + PT
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 356 LFFPAGNK 363
+F G K
Sbjct: 84 VFLKNGVK 91
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
VL + +APWCG + P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 358 FPAGN 362
G
Sbjct: 78 LKDGE 82
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ +D + K V+++ +A WCG + P K A+ + +D ++
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 66
Query: 346 RAKSDGFPTILFFPAGNK 363
+A+ PT++F+ G +
Sbjct: 67 KAEVSSMPTLIFYKGGKE 84
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 291 EIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK 348
E +L++ K+ V+++ +A WCG C+ P + +L++ + V +D +
Sbjct: 16 ESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI--FVKVDVDKLEETARKYN 73
Query: 349 SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383
PT + G K D + + + + KF+
Sbjct: 74 ISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI 108
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + A+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKA 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ +D + K V+++ +A WCG + P K A+ + +D ++
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDVAQ 74
Query: 346 RAKSDGFPTILFFPAGNK 363
+A+ PT++F+ G +
Sbjct: 75 KAEVSSMPTLIFYKGGKE 92
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 357
K V+L+++ WCG +A P Y KLA+ V + K+D AK G +
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV---IFLKLDCNQENKTLAKELGIRVVPT 81
Query: 358 F 358
F
Sbjct: 82 F 82
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILF 357
K +++ YA WCG C+ P +L+K G I +D PTI F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 358 FP 359
P
Sbjct: 112 VP 113
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
VL++ +A WCG C+ P + A+ D + +AK++ N ++ PT++
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77
Query: 358 FPAG 361
F G
Sbjct: 78 FKGG 81
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
VL + +APWCG + P +L + + D + I K+D N+ K PT+L
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 358 FPAGN 362
G
Sbjct: 78 LKDGE 82
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWC--------------GHCQAFEPTYNKLAKHLRGVDSI 332
++FD VL +L++ +A WC G C+ P +++A +G ++
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTV 70
Query: 333 VIAKMDGTTNEHHRAKSDGFPTILFFPAG 361
+D + G PT+L F G
Sbjct: 71 AKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 351
+ K V L + WC HC+ P KH + GV+ + + + H+ KS G
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 81
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALY 380
FP +L D DR V+ Y
Sbjct: 82 FPVVL--------------DTDRQVLDAY 96
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
VL++ +A WCG C+ P + A+ D + +AK++ N ++ PT++
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAE--AHADKVTVAKLNVDENPETTSQFGIMSIPTLIL 77
Query: 358 FPAG 361
F G
Sbjct: 78 FKGG 81
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + ++
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASESEVKS 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 292 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 345
+V + K V+L++YA WC C+ FE + + + V+ + + T N+
Sbjct: 23 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 82
Query: 346 RAKSDGFPTILFF 358
G PTILFF
Sbjct: 83 HLNVLGLPTILFF 95
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 351
+ K V L + WC HC+ P KH + GV+ + + + H+ KS G
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALY 380
FP +L D DR V+ Y
Sbjct: 85 FPVVL--------------DTDRQVLDAY 99
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 292 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 345
+V + K V+L++YA WC C+ FE + + + V+ + + T N+
Sbjct: 26 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 346 RAKSDGFPTILFF 358
G PTILFF
Sbjct: 86 HLNVLGLPTILFF 98
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 281 VKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 324
VKIV FD I+ +++ V+++ +A WCG C+ P Y + +K
Sbjct: 10 VKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSK 53
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 354
D K V+++ A WCG C+ P + + AK G + + +D + + PT
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKV-DVDELKDVAEAYNVEAMPT 84
Query: 355 ILFFPAGNK 363
LF G K
Sbjct: 85 FLFIKDGEK 93
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNK----LAKHLRGVDSIVIAKMDGTTNE 343
N DEI L+ + L+ YA WC Q P + + + + + +V A++D ++
Sbjct: 14 NIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVD--CDQ 70
Query: 344 H----HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 392
H R + +PT+ F G R+V AL ++++ S P +
Sbjct: 71 HSDIAQRYRISKYPTLKLFRNGXXX--KREYRGQRSVKALADYIRQQKSDPIQ 121
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKS 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 289 FDEIVLDESKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA 347
F+E++ ++K +L+ +APW C +LAK L V S V + +G +
Sbjct: 29 FEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQV-SFVKLEAEGVPEVSEKY 87
Query: 348 KSDGFPTILFFPAGNK 363
+ PT LFF K
Sbjct: 88 EISSVPTFLFFKNSQK 103
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 343
V +FD V ES L++ +A WCG + P +LA G I+ K+D N
Sbjct: 9 VTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDENP 64
Query: 344 HHRAKSD--GFPTILFFPAGN 362
AK + PT++ F G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQ 85
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKC 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 295 DESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--- 350
+ESK V+++ A WCG C+ P + LAK L V + K+D T+E SD
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNV---LFLKVD--TDELKSVASDWAI 89
Query: 351 -GFPTILFFPAG 361
PT +F G
Sbjct: 90 QAMPTFMFLKEG 101
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + + G
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVAPKYGIRG 73
Query: 352 FPTILFFPAG 361
PT+L F G
Sbjct: 74 IPTLLLFKNG 83
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 96
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASEXEVKC 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 325
G + VL + K VLL ++A WC C+A N+L+
Sbjct: 40 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ 79
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKC 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 335
K VL+ +A WC +C+ P+ ++L K D +V+A
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPT 354
+ K V+++ A WCG C+ P + + AK G + + +D + + PT
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKV-DVDELKEVAEKYNVEAMPT 92
Query: 355 ILFFPAGNKS 364
LF G ++
Sbjct: 93 FLFIKDGAEA 102
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 28/75 (37%)
Query: 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR 346
N F++++ DE K L+ C CQ P +L + ++ R
Sbjct: 12 NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 347 AKSDGFPTILFFPAG 361
G P IL+F G
Sbjct: 72 FSLKGVPQILYFKDG 86
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + + ++ + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEV-DVNDCQDVASECEVKC 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 270 SDP-IPETNDGDVKIVVGNNFD-EIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 327
DP +P K + G++F E +L K +L +APWC CQ P ++A
Sbjct: 12 QDPTVPAQLQFSAKTLDGHDFHGESLL--GKPAVLWFWAPWCPTCQGEAPVVGQVAASHP 69
Query: 328 GVDSIVIAKMD 338
V + +A +D
Sbjct: 70 EVTFVGVAGLD 80
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH 345
+ FD + + K V+++ YA WCG + P K ++ D + +D +
Sbjct: 14 ASEFDSAIA-QDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKL-DVDELGDVAQ 71
Query: 346 RAKSDGFPTILFFPAGNK 363
+ + PT+L F G +
Sbjct: 72 KNEVSAMPTLLLFKNGKE 89
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 271 DPIPETNDGDVKIVVG-NNFDEIVLDESKD---VLLEIYAPWCGHCQAFEPTYNKLAKHL 326
+P E G+V ++ +D+ + + S+D VL A WCG C+ P Y +L+++
Sbjct: 16 EPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENY 75
Query: 327 RGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 363
+ +VI +D ++ + PT F G +
Sbjct: 76 PSLMFLVI-DVDELSDFSASWEIKATPTFFFLRDGQQ 111
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLA 323
VL + K VLL ++A WC C+A N+L+
Sbjct: 8 VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 38
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 324
++ ++ ++++ YA WCG C+ +P KL +
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ 57
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG + +P ++ L++ V + + +D + A+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEV-DVDDAQDVASEAEVKA 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 TPTFQFFKKGQK 85
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 290 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA--KHLRGVD--SIVIAKMDGTTNEHH 345
+E+ D+ ++E +A W CQ+F P Y L+ + G++ + + + + +
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYK 78
Query: 346 RAKS---DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQK 395
+ S PT++ F G ++ +D V+ + F ++N F + +
Sbjct: 79 VSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVS-WTFSEENVIREFNLNE 130
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG + +P ++ L++ V + + +D + + ++
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDSQDVASESEVKS 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 183 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE 218
+K+ P FEE A +G + F Y MD ED K ++E
Sbjct: 33 KKMKPTFEEMASQMEGDIRFAY--MDAEDAEKTMAE 66
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILF 357
+++ WC C+ +PT+ ++A + G I A MD E A+ + P++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEG--DIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 358 FPAG 361
F G
Sbjct: 78 FVDG 81
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 254 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 313
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 5 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 39
Query: 314 AFEPTYNKLAKHL 326
F+P KL K L
Sbjct: 40 HFDPLLLKLGKAL 52
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 351
+ K V L + WC C+ P KH + GV+ + + + H+ KS G
Sbjct: 25 KGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALY 380
FP +L D DR V+ Y
Sbjct: 85 FPVVL--------------DTDRQVLDAY 99
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 25/73 (34%)
Query: 254 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQ 313
T GED+L PIP+ G +++ LE + +C HC
Sbjct: 4 TEGEDYL-------VLDKPIPQEQSGKIEV------------------LEFFGYFCVHCH 38
Query: 314 AFEPTYNKLAKHL 326
F+P KL K L
Sbjct: 39 HFDPLLLKLGKAL 51
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAK 324
K V+++ A WCG C+ P + LAK
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAK 61
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 351
+ K V L + WC C+ P KH + GV+ + + + H+ KS G
Sbjct: 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALY 380
FP +L D DR V+ Y
Sbjct: 85 FPVVL--------------DTDRQVLDAY 99
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 279 GDVKIVVGNNFDEIVLDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336
G VK + + LD + D V+++ A WCG + +P ++ L++ V + +
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-D 69
Query: 337 MDGTTNEHHRAKSDGFPTILFFPAGNK 363
+D + + PT FF G K
Sbjct: 70 VDDCQDVASECEVKSMPTFQFFKKGQK 96
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 292 IVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------ 345
+V + K V+L++YA WC + FE + + + V+ + + T N+
Sbjct: 26 LVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 346 RAKSDGFPTILFF 358
G PTILFF
Sbjct: 86 HLNVLGLPTILFF 98
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR--GVDSIVIAKMDGTTNEHHRAKSDG-- 351
+ K V L + WC C+ P KH + GV+ + + + H+ KS G
Sbjct: 25 KGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGESKIAVHNFXKSYGVN 84
Query: 352 FPTILFFPAGNKSFDPINVDVDRTVVALY 380
FP +L D DR V+ Y
Sbjct: 85 FPVVL--------------DTDRQVLDAY 99
>pdb|3QPF|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QPF|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha-Mannosidases Provides Unique
Insight Into The Processing Of N- Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Apo-Structure
pdb|3QRY|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QRY|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 1-Deoxymannojirimycin
Complex
pdb|3QSP|A Chain A, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
pdb|3QSP|B Chain B, Analysis Of A New Family Of Widely Distributed
Metal-Independent Alpha Mannosidases Provides Unique
Insight Into The Processing Of N-Linked Glycans,
Streptococcus Pneumoniae Sp_2144 Non-Productive
Substrate Complex With Alpha-1,6-Mannobiose
Length = 426
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 67 VVLGYLNSL-----VGSESEVLADASRLEDDV-----NFYQTTNPDVAKIF 107
VVLGY+ + + V+ADA RL+D++ N+ TTN KI+
Sbjct: 235 VVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYAYTTNSKGEKIY 285
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 283 IVVGNNFDEIVLDESKD----VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
IV N E +L+ K+ VL++ +A WCG CQ +A+ + V + + +D
Sbjct: 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDV-TFIKVDVD 63
Query: 339 GTTNEHHRAKSDGFPTILFF-PAGN--KSFDP-INVDVDRTVVALYKF 382
N P + F GN K+ D + DV R + KF
Sbjct: 64 KNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEKF 111
>pdb|1VZ6|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ6|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|C Chain C, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|D Chain D, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
Length = 393
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 302 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 360
Query: 333 VIA 335
VI
Sbjct: 361 VIG 363
>pdb|2Y6T|E Chain E, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|F Chain F, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|G Chain G, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|H Chain H, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
Length = 148
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 183 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 242
EK+ P + +A K ++IF+ Q D + ++ T N D +H+
Sbjct: 13 EKIAP-YPQAEKGMSRQVIFLEPQKDESRF------------KVELLIGKTLNVDCNRHM 59
Query: 243 LDGELTLDKIKTFGEDFL--EGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV 300
L G L + +G D+L + +P PE + VK V N D + + +
Sbjct: 60 LGGNLETRTLSGWGFDYLVMDKISQPASTMMACPEDSKPQVKFVTANLGDAAMQRYNSRL 119
Query: 301 LLEIYAP 307
+ +Y P
Sbjct: 120 PIVVYVP 126
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
+E K ++++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG 55
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 18/58 (31%)
Query: 270 SDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 327
++PIP+ G V++ LE + +C HC EP +K AK +
Sbjct: 32 ANPIPQQQAGKVEV------------------LEFFGYFCPHCAHLEPVLSKHAKSFK 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 330
+ K + ++++A WCG C+ P +L + G D
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD 63
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338
K +L +APWC CQ P ++A V + +A +D
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome
Recycling Factor (Frr) From Bacillus Anthracis
Length = 209
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 211 DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKS 270
D+ K V +Y A + + GNDD KK GE+T D ++ + ED + K K
Sbjct: 136 DLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKV 195
Query: 271 DPIPETNDGDV 281
D I + + ++
Sbjct: 196 DEIAKNKEKEI 206
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG + +P ++ L++ V + + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV-DVDDCQDVASECEVKR 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 300 VLLEIYAPWCGHCQAFEPTYNKL-AKHLRGVDSIVIAKMDGTTNEHHR 346
V L+ +A WCG C+ P N+ AK+ +V +D T + +
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXK 78
>pdb|2VZK|D Chain D, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|F Chain F, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|H Chain H, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|B Chain B, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|D Chain D, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|F Chain F, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|H Chain H, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|B Chain B, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|D Chain D, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|H Chain H, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 122 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 180
Query: 333 VIA 335
VI
Sbjct: 181 VIG 183
>pdb|2VZK|B Chain B, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|F Chain F, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 277 NDGDVKIVVGNNFDEIVLDESKDVL----LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332
N G V + +G D+ +D+ + + +E+Y P QA + +A+HLRG D +
Sbjct: 122 NWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRG-DEV 180
Query: 333 VIA 335
VI
Sbjct: 181 VIG 183
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 214 KPVSE--YFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLK 265
KPV+ Y G+A +++ Y N+D K +LDG DK+ T FL+ K
Sbjct: 279 KPVNNKLYASFDGDADRLICYYQNNDNKFKLLDG----DKLSTLFALFLQQLFK 328
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 328
+E K +++ A WCG C+ P + L+ G
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAG 55
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 294 LDESKD--VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDG 351
LD + D V+++ A WCG C+ +P ++ L++ V + +D + +
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDXQDVASEXEVKC 73
Query: 352 FPTILFFPAGNK 363
PT FF G K
Sbjct: 74 MPTFQFFKKGQK 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,160,957
Number of Sequences: 62578
Number of extensions: 541825
Number of successful extensions: 1856
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1678
Number of HSP's gapped (non-prelim): 205
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)