Query 013976
Match_columns 432
No_of_seqs 206 out of 2897
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1E-63 2.3E-68 467.8 35.2 371 1-388 98-474 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 4.1E-48 8.8E-53 383.2 40.5 374 1-393 74-460 (462)
3 PTZ00102 disulphide isomerase; 100.0 4.7E-46 1E-50 369.2 38.7 356 1-389 105-467 (477)
4 KOG0912 Thiol-disulfide isomer 100.0 2.2E-27 4.7E-32 204.3 17.2 254 1-274 71-333 (375)
5 PF01216 Calsequestrin: Calseq 99.9 5.7E-22 1.2E-26 174.8 24.0 248 4-266 114-374 (383)
6 PF13848 Thioredoxin_6: Thiore 99.9 1.2E-22 2.6E-27 175.4 18.7 179 72-258 1-184 (184)
7 KOG0191 Thioredoxin/protein di 99.9 1.9E-22 4.2E-27 193.1 20.5 214 160-390 39-255 (383)
8 TIGR02187 GlrX_arch Glutaredox 99.8 1.2E-18 2.7E-23 153.2 17.3 185 172-385 23-214 (215)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.9E-19 6.2E-24 138.7 10.8 101 278-383 8-113 (113)
10 KOG0910 Thioredoxin-like prote 99.8 2.6E-19 5.5E-24 141.0 8.5 104 280-388 44-149 (150)
11 KOG4277 Uncharacterized conser 99.8 5.2E-18 1.1E-22 146.4 16.0 238 2-262 100-353 (468)
12 PF00085 Thioredoxin: Thioredo 99.8 1.3E-18 2.9E-23 134.9 10.5 101 281-386 1-103 (103)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2E-18 4.4E-23 133.1 10.6 97 280-382 2-100 (101)
14 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3.4E-18 7.3E-23 132.9 11.2 103 280-383 1-104 (104)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.7E-18 5.8E-23 133.3 9.7 100 280-383 2-104 (104)
16 cd03065 PDI_b_Calsequestrin_N 99.8 4.6E-18 1E-22 132.7 9.9 104 278-387 8-119 (120)
17 KOG0191 Thioredoxin/protein di 99.8 6.5E-17 1.4E-21 155.0 19.4 295 56-363 39-356 (383)
18 cd02996 PDI_a_ERp44 PDIa famil 99.7 7.6E-18 1.6E-22 131.6 10.1 101 280-383 2-108 (108)
19 cd03002 PDI_a_MPD1_like PDI fa 99.7 3.2E-17 7E-22 128.5 10.4 102 281-384 2-109 (109)
20 COG3118 Thioredoxin domain-con 99.7 1.9E-17 4.2E-22 144.6 9.7 106 279-389 23-132 (304)
21 cd02994 PDI_a_TMX PDIa family, 99.7 6.6E-17 1.4E-21 124.7 10.4 98 280-385 2-101 (101)
22 cd03001 PDI_a_P5 PDIa family, 99.7 7.4E-17 1.6E-21 125.0 10.4 99 281-383 2-102 (103)
23 PRK09381 trxA thioredoxin; Pro 99.7 1.1E-16 2.4E-21 125.3 11.4 105 279-388 3-109 (109)
24 PTZ00102 disulphide isomerase; 99.7 3.2E-15 6.9E-20 148.6 23.5 224 26-262 212-467 (477)
25 TIGR01130 ER_PDI_fam protein d 99.7 2.4E-14 5.2E-19 141.9 29.5 310 48-394 3-334 (462)
26 cd02993 PDI_a_APS_reductase PD 99.7 1.4E-16 3E-21 124.4 10.4 101 280-383 2-109 (109)
27 cd02963 TRX_DnaJ TRX domain, D 99.7 7.6E-17 1.6E-21 126.1 8.6 99 283-385 8-110 (111)
28 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.4E-16 3.1E-21 123.2 9.6 98 281-383 2-102 (102)
29 PTZ00443 Thioredoxin domain-co 99.7 1.5E-16 3.2E-21 138.3 10.1 109 278-391 29-143 (224)
30 cd02956 ybbN ybbN protein fami 99.7 2E-16 4.3E-21 120.8 9.6 93 287-384 1-96 (96)
31 cd02998 PDI_a_ERp38 PDIa famil 99.7 6.1E-16 1.3E-20 120.3 10.9 101 281-383 2-105 (105)
32 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.2E-16 7E-21 120.7 9.1 98 281-386 3-115 (116)
33 cd02954 DIM1 Dim1 family; Dim1 99.7 1.7E-16 3.6E-21 121.8 6.5 77 287-365 3-82 (114)
34 cd02999 PDI_a_ERp44_like PDIa 99.7 3.7E-16 8E-21 119.5 8.2 90 287-383 7-100 (100)
35 PHA02278 thioredoxin-like prot 99.7 3.8E-16 8.3E-21 119.2 8.1 90 287-382 5-100 (103)
36 TIGR01126 pdi_dom protein disu 99.7 7.9E-16 1.7E-20 119.0 9.9 100 284-387 1-102 (102)
37 KOG0190 Protein disulfide isom 99.6 2.4E-13 5.3E-18 129.0 26.2 324 35-394 10-353 (493)
38 cd02997 PDI_a_PDIR PDIa family 99.6 1.9E-15 4.1E-20 117.3 10.0 99 281-383 2-104 (104)
39 PRK10996 thioredoxin 2; Provis 99.6 2.3E-15 4.9E-20 122.5 10.3 104 278-387 34-139 (139)
40 cd02992 PDI_a_QSOX PDIa family 99.6 4.7E-15 1E-19 116.4 10.8 102 280-382 2-111 (114)
41 cd02985 TRX_CDSP32 TRX family, 99.6 3E-15 6.5E-20 115.4 8.9 94 286-386 3-102 (103)
42 cd02965 HyaE HyaE family; HyaE 99.6 5.6E-15 1.2E-19 112.5 9.8 94 281-380 12-109 (111)
43 cd02948 TRX_NDPK TRX domain, T 99.6 3.9E-15 8.4E-20 114.7 9.1 95 285-385 6-101 (102)
44 TIGR00424 APS_reduc 5'-adenyly 99.6 4.9E-15 1.1E-19 141.6 11.7 106 278-386 350-462 (463)
45 PLN02309 5'-adenylylsulfate re 99.6 4.9E-15 1.1E-19 141.6 11.2 106 278-386 344-456 (457)
46 cd02957 Phd_like Phosducin (Ph 99.6 6E-15 1.3E-19 115.9 9.2 99 279-383 4-112 (113)
47 cd02962 TMX2 TMX2 family; comp 99.6 6.3E-15 1.4E-19 120.4 9.6 94 270-365 20-122 (152)
48 TIGR01068 thioredoxin thioredo 99.6 9.5E-15 2.1E-19 112.6 9.6 98 285-387 2-101 (101)
49 cd02950 TxlA TRX-like protein 99.6 4.6E-14 9.9E-19 115.2 12.8 98 287-390 11-113 (142)
50 cd03000 PDI_a_TMX3 PDIa family 99.6 2E-14 4.4E-19 111.3 10.3 94 287-386 7-103 (104)
51 KOG0907 Thioredoxin [Posttrans 99.6 2.1E-14 4.5E-19 109.6 8.7 85 295-386 19-105 (106)
52 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.8E-14 6E-19 111.6 9.7 101 279-383 4-112 (113)
53 cd02961 PDI_a_family Protein D 99.5 2.8E-14 6E-19 109.9 8.9 98 283-383 2-101 (101)
54 cd02987 Phd_like_Phd Phosducin 99.5 6.4E-14 1.4E-18 118.1 9.8 130 253-386 37-174 (175)
55 PLN00410 U5 snRNP protein, DIM 99.5 8E-14 1.7E-18 111.4 9.2 98 286-388 11-121 (142)
56 KOG4277 Uncharacterized conser 99.5 2.2E-14 4.7E-19 124.2 5.8 94 296-393 42-138 (468)
57 cd03072 PDI_b'_ERp44 PDIb' fam 99.5 1.1E-13 2.4E-18 107.4 9.2 107 153-263 1-111 (111)
58 cd02949 TRX_NTR TRX domain, no 99.5 1.2E-13 2.6E-18 105.4 8.9 90 290-384 6-97 (97)
59 cd02988 Phd_like_VIAF Phosduci 99.5 1.8E-13 3.9E-18 116.8 9.1 126 255-386 60-191 (192)
60 cd02953 DsbDgamma DsbD gamma f 99.5 2.9E-13 6.3E-18 104.8 9.0 91 288-384 3-104 (104)
61 cd02984 TRX_PICOT TRX domain, 99.5 2.4E-13 5.1E-18 104.0 8.3 91 287-383 3-96 (97)
62 KOG0912 Thiol-disulfide isomer 99.5 1.1E-13 2.5E-18 120.1 6.8 105 285-392 2-111 (375)
63 KOG0908 Thioredoxin-like prote 99.5 2.8E-13 6E-18 114.6 8.8 99 286-391 9-110 (288)
64 cd02986 DLP Dim1 family, Dim1- 99.4 3.6E-13 7.8E-18 102.4 7.6 76 287-364 3-81 (114)
65 cd02975 PfPDO_like_N Pyrococcu 99.4 7.7E-13 1.7E-17 103.5 9.0 90 295-388 20-111 (113)
66 PF01216 Calsequestrin: Calseq 99.4 3.5E-10 7.5E-15 100.9 26.5 310 48-394 36-375 (383)
67 cd03069 PDI_b_ERp57 PDIb famil 99.4 2.4E-12 5.1E-17 99.2 10.6 95 48-148 2-103 (104)
68 PTZ00051 thioredoxin; Provisio 99.4 9.4E-13 2E-17 100.8 8.3 92 281-380 2-96 (98)
69 cd03066 PDI_b_Calsequestrin_mi 99.4 3.7E-12 8.1E-17 97.8 11.5 99 47-149 1-101 (102)
70 PF13848 Thioredoxin_6: Thiore 99.4 2.4E-11 5.2E-16 104.7 17.3 172 184-385 7-184 (184)
71 cd02981 PDI_b_family Protein D 99.4 4.8E-12 1E-16 96.6 11.2 96 48-148 1-97 (97)
72 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 3.1E-12 6.7E-17 98.5 9.8 100 151-256 1-101 (101)
73 TIGR01295 PedC_BrcD bacterioci 99.4 3.5E-12 7.6E-17 100.9 8.8 96 281-384 8-121 (122)
74 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 4E-12 8.7E-17 98.4 8.5 101 151-256 1-104 (104)
75 cd02947 TRX_family TRX family; 99.3 6E-12 1.3E-16 94.9 9.1 89 288-383 2-92 (93)
76 cd02982 PDI_b'_family Protein 99.3 7.5E-12 1.6E-16 96.7 9.1 84 297-386 12-102 (103)
77 cd03068 PDI_b_ERp72 PDIb famil 99.3 1.7E-11 3.6E-16 94.5 10.8 97 47-148 1-107 (107)
78 PTZ00062 glutaredoxin; Provisi 99.3 7.5E-12 1.6E-16 107.1 9.3 91 286-389 6-96 (204)
79 cd03006 PDI_a_EFP1_N PDIa fami 99.3 9.4E-12 2E-16 96.7 9.1 101 150-256 8-113 (113)
80 PF00085 Thioredoxin: Thioredo 99.3 8.3E-12 1.8E-16 96.5 8.8 101 153-259 1-103 (103)
81 cd02982 PDI_b'_family Protein 99.3 1.2E-11 2.5E-16 95.7 8.5 97 161-260 5-103 (103)
82 cd02996 PDI_a_ERp44 PDIa famil 99.3 1.4E-11 3.1E-16 96.0 8.8 100 152-256 2-108 (108)
83 TIGR02187 GlrX_arch Glutaredox 99.3 3.2E-10 6.9E-15 99.8 16.9 181 64-258 19-214 (215)
84 cd03001 PDI_a_P5 PDIa family, 99.2 4.1E-11 8.8E-16 92.6 9.2 99 153-256 2-102 (103)
85 cd02983 P5_C P5 family, C-term 99.2 1.3E-10 2.8E-15 92.8 11.8 112 151-266 2-121 (130)
86 cd02951 SoxW SoxW family; SoxW 99.2 3.6E-11 7.9E-16 96.4 8.6 90 295-389 11-121 (125)
87 cd03002 PDI_a_MPD1_like PDI fa 99.2 7.2E-11 1.6E-15 92.2 9.2 102 153-257 2-109 (109)
88 cd02959 ERp19 Endoplasmic reti 99.2 2.5E-11 5.4E-16 95.5 6.5 93 294-386 16-112 (117)
89 TIGR00411 redox_disulf_1 small 99.2 9E-11 1.9E-15 86.5 8.9 78 300-386 2-81 (82)
90 cd02952 TRP14_like Human TRX-r 99.2 6.7E-11 1.5E-15 92.2 8.3 77 286-364 9-103 (119)
91 cd03065 PDI_b_Calsequestrin_N 99.2 9.8E-11 2.1E-15 91.6 8.5 102 152-260 10-119 (120)
92 cd03073 PDI_b'_ERp72_ERp57 PDI 99.2 9E-11 2E-15 90.9 8.1 102 153-260 1-111 (111)
93 cd03007 PDI_a_ERp29_N PDIa fam 99.2 1.2E-10 2.7E-15 89.8 8.7 103 153-258 3-114 (116)
94 cd02993 PDI_a_APS_reductase PD 99.2 1.4E-10 3.1E-15 90.4 8.6 100 153-256 3-109 (109)
95 TIGR01126 pdi_dom protein disu 99.2 1.8E-10 3.9E-15 88.7 8.5 98 156-259 1-101 (102)
96 KOG0910 Thioredoxin-like prote 99.1 3.1E-10 6.7E-15 89.9 8.7 106 150-261 42-149 (150)
97 cd02994 PDI_a_TMX PDIa family, 99.1 5.1E-10 1.1E-14 86.0 9.5 98 152-258 2-101 (101)
98 cd03005 PDI_a_ERp46 PDIa famil 99.1 3.2E-10 6.9E-15 87.4 7.9 97 153-256 2-102 (102)
99 KOG1731 FAD-dependent sulfhydr 99.1 1.1E-10 2.3E-15 110.8 6.0 115 276-390 36-156 (606)
100 PRK09381 trxA thioredoxin; Pro 99.1 1E-09 2.2E-14 85.6 10.0 103 152-260 4-108 (109)
101 cd02998 PDI_a_ERp38 PDIa famil 99.1 1.1E-09 2.4E-14 84.8 9.4 100 153-256 2-105 (105)
102 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.3E-09 2.8E-14 84.3 9.0 98 153-256 2-104 (104)
103 PTZ00443 Thioredoxin domain-co 99.0 1E-09 2.2E-14 95.7 8.8 104 151-261 30-140 (224)
104 PTZ00062 glutaredoxin; Provisi 99.0 5.2E-09 1.1E-13 89.7 12.3 159 159-362 7-177 (204)
105 cd02997 PDI_a_PDIR PDIa family 99.0 1.7E-09 3.7E-14 83.6 8.5 100 153-256 2-104 (104)
106 PRK10996 thioredoxin 2; Provis 99.0 1.9E-09 4.1E-14 87.8 8.8 101 153-259 37-138 (139)
107 TIGR00412 redox_disulf_2 small 99.0 1.2E-09 2.6E-14 78.8 6.3 72 302-383 3-75 (76)
108 cd02961 PDI_a_family Protein D 99.0 1.6E-09 3.5E-14 83.0 7.5 97 155-256 2-101 (101)
109 cd02999 PDI_a_ERp44_like PDIa 99.0 1.7E-09 3.8E-14 82.6 7.5 83 166-256 16-100 (100)
110 cd02956 ybbN ybbN protein fami 99.0 3.3E-09 7.2E-14 80.7 8.9 84 168-257 12-96 (96)
111 cd02950 TxlA TRX-like protein 99.0 5.9E-09 1.3E-13 85.1 10.5 105 159-266 11-116 (142)
112 TIGR00424 APS_reduc 5'-adenyly 98.9 6.7E-09 1.4E-13 99.8 10.4 105 151-259 351-462 (463)
113 cd02963 TRX_DnaJ TRX domain, D 98.9 5.6E-09 1.2E-13 81.5 8.0 86 167-258 23-110 (111)
114 PHA02125 thioredoxin-like prot 98.9 3.7E-09 8.1E-14 76.1 6.4 68 301-382 2-72 (75)
115 PRK00293 dipZ thiol:disulfide 98.9 8.6E-09 1.9E-13 103.4 10.4 98 286-387 460-570 (571)
116 COG3118 Thioredoxin domain-con 98.9 1E-08 2.3E-13 90.4 9.6 106 151-262 23-132 (304)
117 cd02965 HyaE HyaE family; HyaE 98.9 2.3E-08 5E-13 76.4 9.6 95 153-253 12-109 (111)
118 PRK11509 hydrogenase-1 operon 98.8 2.9E-08 6.2E-13 78.2 9.7 105 282-391 20-128 (132)
119 TIGR01068 thioredoxin thioredo 98.8 1.8E-08 3.8E-13 77.3 8.5 97 157-259 2-100 (101)
120 PRK14018 trifunctional thiored 98.8 2.8E-08 6.1E-13 96.8 11.7 90 293-386 52-172 (521)
121 PLN02309 5'-adenylylsulfate re 98.8 1.9E-08 4.1E-13 96.8 9.8 105 151-259 345-456 (457)
122 cd03000 PDI_a_TMX3 PDIa family 98.8 3.5E-08 7.6E-13 76.2 9.0 93 159-259 7-103 (104)
123 TIGR03143 AhpF_homolog putativ 98.8 1.6E-07 3.4E-12 94.8 16.1 182 170-383 367-554 (555)
124 PF13098 Thioredoxin_2: Thiore 98.8 5.5E-09 1.2E-13 82.0 4.0 84 295-383 3-112 (112)
125 TIGR02738 TrbB type-F conjugat 98.8 6.6E-08 1.4E-12 79.4 9.7 86 297-386 50-152 (153)
126 cd02953 DsbDgamma DsbD gamma f 98.7 4.3E-08 9.4E-13 75.7 8.0 96 160-257 3-104 (104)
127 cd02955 SSP411 TRX domain, SSP 98.7 8.6E-08 1.9E-12 75.7 9.7 69 294-364 12-94 (124)
128 TIGR02740 TraF-like TraF-like 98.7 3.4E-08 7.4E-13 89.4 8.4 88 297-388 166-265 (271)
129 cd02954 DIM1 Dim1 family; Dim1 98.7 1E-08 2.3E-13 78.9 4.1 66 167-237 13-79 (114)
130 PHA02278 thioredoxin-like prot 98.7 4.1E-08 8.8E-13 75.0 7.2 94 159-255 5-100 (103)
131 cd02973 TRX_GRX_like Thioredox 98.7 3.6E-08 7.9E-13 69.3 6.2 54 301-357 3-58 (67)
132 cd02989 Phd_like_TxnDC9 Phosdu 98.7 1.3E-07 2.8E-12 73.9 9.7 99 152-256 5-112 (113)
133 cd02948 TRX_NDPK TRX domain, T 98.7 7.5E-08 1.6E-12 74.0 7.7 94 157-258 6-101 (102)
134 PLN00410 U5 snRNP protein, DIM 98.7 1E-07 2.2E-12 76.4 8.6 102 159-264 12-124 (142)
135 PRK03147 thiol-disulfide oxido 98.7 2.2E-07 4.8E-12 79.0 11.1 101 280-385 45-170 (173)
136 PF13905 Thioredoxin_8: Thiore 98.7 8.5E-08 1.8E-12 72.7 7.6 66 297-362 1-93 (95)
137 cd02957 Phd_like Phosducin (Ph 98.7 1.4E-07 3E-12 74.0 8.4 98 151-256 4-112 (113)
138 cd02985 TRX_CDSP32 TRX family, 98.6 8.9E-08 1.9E-12 73.7 7.1 95 159-258 4-101 (103)
139 cd02964 TryX_like_family Trypa 98.6 1.2E-07 2.6E-12 76.7 8.0 67 296-362 16-110 (132)
140 KOG1731 FAD-dependent sulfhydr 98.6 2.4E-07 5.2E-12 88.5 11.0 225 152-395 40-277 (606)
141 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.3E-07 2.8E-12 70.2 7.2 72 299-380 14-87 (89)
142 cd03009 TryX_like_TryX_NRX Try 98.6 1.3E-07 2.9E-12 76.3 7.9 68 296-363 17-112 (131)
143 cd02992 PDI_a_QSOX PDIa family 98.6 2.2E-07 4.7E-12 72.8 8.8 99 152-253 2-109 (114)
144 cd02962 TMX2 TMX2 family; comp 98.6 1.5E-07 3.3E-12 77.1 7.8 83 152-237 29-119 (152)
145 PRK15412 thiol:disulfide inter 98.6 2.4E-07 5.2E-12 79.5 9.0 86 295-388 66-177 (185)
146 TIGR00385 dsbE periplasmic pro 98.6 2.6E-07 5.7E-12 78.4 8.4 86 295-388 61-172 (173)
147 cd02949 TRX_NTR TRX domain, no 98.6 3.1E-07 6.7E-12 69.8 7.9 87 165-257 10-97 (97)
148 cd03008 TryX_like_RdCVF Trypar 98.6 2.1E-07 4.6E-12 75.5 7.2 68 296-363 24-125 (146)
149 cd02975 PfPDO_like_N Pyrococcu 98.5 4.4E-07 9.5E-12 71.0 8.6 90 166-261 20-111 (113)
150 cd02966 TlpA_like_family TlpA- 98.5 3E-07 6.4E-12 72.1 7.8 67 297-364 19-111 (116)
151 cd02984 TRX_PICOT TRX domain, 98.5 2.8E-07 6E-12 70.1 7.4 91 159-256 3-96 (97)
152 cd03010 TlpA_like_DsbE TlpA-li 98.5 2.6E-07 5.7E-12 74.2 7.1 76 297-379 25-126 (127)
153 KOG0914 Thioredoxin-like prote 98.5 1.7E-07 3.6E-12 78.2 5.5 87 278-365 123-219 (265)
154 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 4.3E-07 9.4E-12 72.4 7.9 90 284-381 8-120 (123)
155 cd02986 DLP Dim1 family, Dim1- 98.5 1E-06 2.2E-11 67.4 8.9 91 167-262 13-113 (114)
156 KOG0913 Thiol-disulfide isomer 98.5 6.3E-08 1.4E-12 82.0 2.6 100 280-387 25-126 (248)
157 cd02960 AGR Anterior Gradient 98.5 7.9E-07 1.7E-11 70.1 8.1 69 294-364 20-93 (130)
158 cd02947 TRX_family TRX family; 98.5 1E-06 2.3E-11 65.9 8.6 91 160-257 2-93 (93)
159 PLN02919 haloacid dehalogenase 98.5 5.8E-07 1.3E-11 96.5 9.6 89 296-388 419-537 (1057)
160 cd02958 UAS UAS family; UAS is 98.5 1.1E-06 2.4E-11 69.0 8.8 89 294-387 14-111 (114)
161 PF02114 Phosducin: Phosducin; 98.4 1.2E-06 2.6E-11 78.6 9.2 112 278-392 124-243 (265)
162 PTZ00051 thioredoxin; Provisio 98.4 7.9E-07 1.7E-11 67.7 7.0 89 157-253 7-96 (98)
163 KOG0907 Thioredoxin [Posttrans 98.4 1.3E-06 2.9E-11 66.7 7.9 83 168-258 21-104 (106)
164 cd03070 PDI_b_ERp44 PDIb famil 98.4 2.4E-06 5.2E-11 62.6 8.0 83 48-137 1-85 (91)
165 cd02987 Phd_like_Phd Phosducin 98.4 2.4E-06 5.2E-11 72.2 9.3 102 150-258 61-173 (175)
166 PF13899 Thioredoxin_7: Thiore 98.4 3.8E-07 8.3E-12 66.9 3.6 64 294-359 14-81 (82)
167 cd02951 SoxW SoxW family; SoxW 98.4 2E-06 4.2E-11 68.8 8.0 97 164-262 9-121 (125)
168 PRK13728 conjugal transfer pro 98.3 2.5E-06 5.4E-11 71.4 8.7 83 301-389 73-173 (181)
169 cd02967 mauD Methylamine utili 98.3 1.5E-06 3.2E-11 68.3 6.8 40 296-337 20-59 (114)
170 COG4232 Thiol:disulfide interc 98.3 1.4E-06 2.9E-11 84.5 7.7 103 282-387 457-568 (569)
171 TIGR01295 PedC_BrcD bacterioci 98.3 3.3E-06 7.1E-11 66.9 7.6 102 153-257 8-121 (122)
172 smart00594 UAS UAS domain. 98.2 5.6E-06 1.2E-10 65.7 8.4 95 287-383 14-121 (122)
173 cd03067 PDI_b_PDIR_N PDIb fami 98.2 3.5E-06 7.6E-11 61.4 6.4 97 159-258 10-110 (112)
174 PRK15317 alkyl hydroperoxide r 98.2 4.8E-05 1E-09 76.4 16.9 176 170-388 20-199 (517)
175 TIGR00411 redox_disulf_1 small 98.2 8.7E-06 1.9E-10 59.6 8.7 78 172-259 3-81 (82)
176 PLN02399 phospholipid hydroper 98.2 1.4E-05 3E-10 70.5 9.8 89 296-388 98-235 (236)
177 PF07912 ERp29_N: ERp29, N-ter 98.2 4.3E-05 9.3E-10 58.4 11.0 105 280-389 5-121 (126)
178 cd03012 TlpA_like_DipZ_like Tl 98.2 1.1E-05 2.3E-10 64.6 8.3 67 296-363 22-118 (126)
179 PRK11509 hydrogenase-1 operon 98.1 2.8E-05 6.1E-10 61.4 9.9 102 155-263 21-127 (132)
180 cd02983 P5_C P5 family, C-term 98.1 3E-05 6.5E-10 62.0 10.2 106 46-153 2-119 (130)
181 cd02988 Phd_like_VIAF Phosduci 98.1 1.9E-05 4.2E-10 67.6 9.4 102 148-258 79-190 (192)
182 TIGR02200 GlrX_actino Glutared 98.0 1.3E-05 2.7E-10 57.9 6.1 68 301-384 2-76 (77)
183 TIGR03140 AhpF alkyl hydropero 98.0 0.00019 4E-09 72.1 16.5 176 170-387 20-199 (515)
184 TIGR02661 MauD methylamine deh 98.0 3.1E-05 6.7E-10 66.6 9.1 85 296-386 73-178 (189)
185 PTZ00056 glutathione peroxidas 98.0 1.8E-05 3.9E-10 68.5 7.6 44 296-340 38-81 (199)
186 PF08534 Redoxin: Redoxin; In 98.0 1.4E-05 3E-10 65.8 6.7 68 296-364 27-127 (146)
187 cd02952 TRP14_like Human TRX-r 98.0 2.1E-05 4.6E-10 61.4 7.2 86 168-256 21-118 (119)
188 PLN02412 probable glutathione 98.0 2.9E-05 6.3E-10 65.3 8.3 89 296-388 28-165 (167)
189 TIGR02196 GlrX_YruB Glutaredox 98.0 1.4E-05 3.1E-10 57.0 5.5 67 301-384 2-74 (74)
190 KOG2603 Oligosaccharyltransfer 98.0 6.3E-05 1.4E-09 66.9 10.0 115 278-392 39-171 (331)
191 COG0526 TrxA Thiol-disulfide i 98.0 3.2E-05 7E-10 60.6 7.6 66 297-364 32-102 (127)
192 cd01659 TRX_superfamily Thiore 98.0 2.9E-05 6.3E-10 53.3 6.5 58 301-361 1-63 (69)
193 TIGR02540 gpx7 putative glutat 98.0 4.3E-05 9.3E-10 63.4 8.4 43 296-339 21-63 (153)
194 cd02969 PRX_like1 Peroxiredoxi 97.9 8.1E-05 1.8E-09 63.0 9.5 89 296-389 24-154 (171)
195 TIGR03143 AhpF_homolog putativ 97.9 0.0006 1.3E-08 69.1 16.5 185 56-256 356-554 (555)
196 KOG0908 Thioredoxin-like prote 97.8 0.00013 2.9E-09 62.7 9.0 87 169-263 22-109 (288)
197 PF13192 Thioredoxin_3: Thiore 97.8 9.8E-05 2.1E-09 53.0 7.2 70 304-384 5-76 (76)
198 PF13728 TraF: F plasmid trans 97.8 9.9E-05 2.1E-09 64.5 7.6 83 297-382 120-213 (215)
199 PF13098 Thioredoxin_2: Thiore 97.7 3.9E-05 8.5E-10 59.9 4.5 88 167-256 4-112 (112)
200 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00026 5.7E-09 54.9 9.0 103 281-389 1-110 (111)
201 cd02981 PDI_b_family Protein D 97.7 0.0002 4.3E-09 54.3 7.9 84 293-386 13-97 (97)
202 PF06110 DUF953: Eukaryotic pr 97.7 0.00012 2.5E-09 57.0 6.2 65 296-362 18-100 (119)
203 cd03074 PDI_b'_Calsequestrin_C 97.7 0.00069 1.5E-08 50.2 9.4 105 152-260 2-120 (120)
204 PRK14018 trifunctional thiored 97.6 0.00036 7.9E-09 68.6 10.3 94 164-259 52-172 (521)
205 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00039 8.4E-09 50.9 7.7 100 47-147 2-110 (112)
206 PRK03147 thiol-disulfide oxido 97.6 0.00058 1.3E-08 57.8 10.4 91 167-259 60-171 (173)
207 cd02959 ERp19 Endoplasmic reti 97.6 0.00014 3.1E-09 57.1 5.9 93 165-259 16-112 (117)
208 PTZ00256 glutathione peroxidas 97.6 0.0004 8.6E-09 59.4 8.8 43 297-340 40-83 (183)
209 PRK11200 grxA glutaredoxin 1; 97.6 0.00038 8.2E-09 51.2 7.5 75 300-388 2-84 (85)
210 cd00340 GSH_Peroxidase Glutath 97.6 0.00016 3.5E-09 59.9 6.0 42 297-340 22-63 (152)
211 TIGR01626 ytfJ_HI0045 conserve 97.5 0.00039 8.5E-09 58.7 7.8 82 297-381 59-174 (184)
212 KOG1672 ATP binding protein [P 97.5 0.00031 6.6E-09 58.2 6.5 103 281-387 68-178 (211)
213 PRK13703 conjugal pilus assemb 97.5 0.00074 1.6E-08 59.8 9.1 89 297-388 143-242 (248)
214 TIGR02739 TraF type-F conjugat 97.5 0.00054 1.2E-08 61.0 8.2 88 298-388 151-249 (256)
215 TIGR02740 TraF-like TraF-like 97.5 0.00076 1.7E-08 61.3 9.3 92 168-261 166-265 (271)
216 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00023 5E-09 52.2 4.6 56 301-362 1-63 (84)
217 PRK00293 dipZ thiol:disulfide 97.4 0.00071 1.5E-08 68.3 9.4 91 167-260 473-570 (571)
218 cd02958 UAS UAS family; UAS is 97.4 0.0013 2.8E-08 51.4 9.0 93 166-261 15-112 (114)
219 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0012 2.5E-08 51.2 8.3 96 283-386 3-110 (111)
220 PF00578 AhpC-TSA: AhpC/TSA fa 97.3 0.00069 1.5E-08 53.8 6.9 46 296-342 24-70 (124)
221 KOG2501 Thioredoxin, nucleored 97.3 0.0002 4.3E-09 57.8 3.5 69 296-364 32-129 (157)
222 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0064 1.4E-07 46.7 11.0 106 153-259 6-118 (126)
223 KOG0914 Thioredoxin-like prote 97.3 0.00034 7.4E-09 58.9 4.5 68 167-237 143-216 (265)
224 TIGR00412 redox_disulf_2 small 97.3 0.0019 4.1E-08 46.3 7.8 72 172-256 2-75 (76)
225 cd02955 SSP411 TRX domain, SSP 97.3 0.001 2.3E-08 52.5 7.0 97 158-259 5-118 (124)
226 cd02973 TRX_GRX_like Thioredox 97.3 0.0011 2.4E-08 46.2 6.5 55 172-232 3-58 (67)
227 cd02991 UAS_ETEA UAS family, E 97.3 0.0015 3.3E-08 51.0 7.7 91 294-387 14-113 (116)
228 KOG0911 Glutaredoxin-related p 97.2 0.00067 1.4E-08 57.8 5.7 172 166-362 15-203 (227)
229 KOG3170 Conserved phosducin-li 97.2 0.0034 7.4E-08 52.2 9.3 132 254-391 68-205 (240)
230 TIGR02738 TrbB type-F conjugat 97.2 0.0052 1.1E-07 50.6 10.4 90 168-259 50-152 (153)
231 KOG3425 Uncharacterized conser 97.2 0.0031 6.8E-08 47.9 8.1 73 287-361 13-105 (128)
232 cd03017 PRX_BCP Peroxiredoxin 97.2 0.00091 2E-08 54.4 6.0 44 297-341 23-67 (140)
233 smart00594 UAS UAS domain. 97.1 0.002 4.3E-08 51.1 7.3 88 166-256 25-121 (122)
234 TIGR00385 dsbE periplasmic pro 97.1 0.0033 7.2E-08 53.2 9.2 91 166-261 61-172 (173)
235 COG2143 Thioredoxin-related pr 97.1 0.0055 1.2E-07 49.0 9.4 89 295-388 40-150 (182)
236 cd02966 TlpA_like_family TlpA- 97.1 0.003 6.6E-08 48.9 8.3 75 168-244 19-115 (116)
237 cd02976 NrdH NrdH-redoxin (Nrd 97.1 0.0011 2.3E-08 46.9 5.0 65 301-382 2-72 (73)
238 PF14595 Thioredoxin_9: Thiore 97.1 0.00084 1.8E-08 53.5 4.6 62 297-361 41-107 (129)
239 PF13905 Thioredoxin_8: Thiore 97.0 0.0026 5.5E-08 47.8 6.6 43 168-210 1-46 (95)
240 cd03010 TlpA_like_DsbE TlpA-li 97.0 0.0033 7.2E-08 50.1 7.6 82 167-252 24-126 (127)
241 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0025 5.4E-08 46.9 6.2 76 300-389 1-84 (86)
242 cd03011 TlpA_like_ScsD_MtbDsbE 97.0 0.0049 1.1E-07 48.8 8.2 83 167-254 19-120 (123)
243 PRK15317 alkyl hydroperoxide r 96.9 0.03 6.5E-07 56.4 15.5 180 55-258 8-196 (517)
244 cd02968 SCO SCO (an acronym fo 96.9 0.0024 5.2E-08 52.0 6.0 47 296-342 21-70 (142)
245 PRK15412 thiol:disulfide inter 96.9 0.0085 1.8E-07 51.3 9.4 91 167-262 67-178 (185)
246 PRK10606 btuE putative glutath 96.8 0.0029 6.2E-08 53.8 5.5 43 297-341 25-67 (183)
247 KOG0911 Glutaredoxin-related p 96.7 0.00092 2E-08 57.0 2.4 72 295-372 15-88 (227)
248 PF00462 Glutaredoxin: Glutare 96.7 0.0027 5.8E-08 43.1 4.2 49 301-357 1-55 (60)
249 cd02970 PRX_like2 Peroxiredoxi 96.7 0.0045 9.7E-08 50.8 6.1 46 298-344 25-70 (149)
250 PRK09437 bcp thioredoxin-depen 96.7 0.0055 1.2E-07 50.8 6.5 45 296-341 29-74 (154)
251 TIGR03140 AhpF alkyl hydropero 96.6 0.075 1.6E-06 53.5 15.7 182 55-259 8-198 (515)
252 PRK10329 glutaredoxin-like pro 96.6 0.0095 2.1E-07 43.2 6.7 71 301-388 3-78 (81)
253 cd03014 PRX_Atyp2cys Peroxired 96.6 0.005 1.1E-07 50.3 5.9 43 296-341 25-68 (143)
254 cd03018 PRX_AhpE_like Peroxire 96.5 0.005 1.1E-07 50.6 5.6 43 298-341 29-72 (149)
255 PRK13728 conjugal transfer pro 96.5 0.025 5.3E-07 47.7 9.4 90 172-261 73-172 (181)
256 cd03026 AhpF_NTD_C TRX-GRX-lik 96.5 0.016 3.5E-07 42.9 7.3 73 169-252 12-86 (89)
257 KOG2603 Oligosaccharyltransfer 96.4 0.049 1.1E-06 49.0 11.2 119 138-261 27-167 (331)
258 PRK00522 tpx lipid hydroperoxi 96.4 0.008 1.7E-07 50.5 6.0 42 297-341 44-86 (167)
259 cd03009 TryX_like_TryX_NRX Try 96.4 0.011 2.3E-07 47.5 6.5 69 167-237 17-110 (131)
260 TIGR02190 GlrX-dom Glutaredoxi 96.4 0.0071 1.5E-07 43.7 4.7 56 297-362 6-66 (79)
261 PLN02919 haloacid dehalogenase 96.3 0.018 3.8E-07 62.7 9.7 93 167-261 419-537 (1057)
262 PHA02125 thioredoxin-like prot 96.3 0.0085 1.8E-07 42.8 5.0 49 172-231 2-51 (75)
263 cd02066 GRX_family Glutaredoxi 96.3 0.0086 1.9E-07 41.9 4.9 52 301-362 2-59 (72)
264 PF02114 Phosducin: Phosducin; 96.3 0.025 5.5E-07 51.0 8.9 103 150-259 124-237 (265)
265 cd03015 PRX_Typ2cys Peroxiredo 96.3 0.0078 1.7E-07 50.9 5.4 86 297-386 29-156 (173)
266 cd02971 PRX_family Peroxiredox 96.3 0.0087 1.9E-07 48.5 5.5 45 296-341 21-66 (140)
267 cd03419 GRX_GRXh_1_2_like Glut 96.3 0.012 2.6E-07 42.7 5.6 54 301-362 2-62 (82)
268 PF13728 TraF: F plasmid trans 96.3 0.024 5.2E-07 49.6 8.4 81 172-254 124-212 (215)
269 PF05768 DUF836: Glutaredoxin- 96.2 0.0089 1.9E-07 43.4 4.7 79 300-384 1-81 (81)
270 TIGR02194 GlrX_NrdH Glutaredox 96.2 0.0082 1.8E-07 42.5 4.4 65 301-381 1-70 (72)
271 KOG3171 Conserved phosducin-li 96.1 0.023 4.9E-07 48.0 7.0 108 279-389 138-253 (273)
272 cd02964 TryX_like_family Trypa 96.1 0.027 5.8E-07 45.2 7.4 69 167-237 16-110 (132)
273 TIGR03137 AhpC peroxiredoxin. 96.1 0.011 2.4E-07 50.7 5.3 87 297-386 31-155 (187)
274 KOG3414 Component of the U4/U6 96.1 0.031 6.8E-07 42.9 7.0 99 287-387 12-120 (142)
275 cd03027 GRX_DEP Glutaredoxin ( 96.1 0.012 2.7E-07 41.6 4.6 47 301-355 3-55 (73)
276 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.013 2.8E-07 41.7 4.7 52 301-362 2-60 (75)
277 PF07449 HyaE: Hydrogenase-1 e 96.0 0.011 2.3E-07 45.0 4.3 83 279-364 9-95 (107)
278 TIGR02181 GRX_bact Glutaredoxi 96.0 0.0089 1.9E-07 43.1 3.7 52 301-362 1-58 (79)
279 TIGR02739 TraF type-F conjugat 96.0 0.058 1.3E-06 48.2 9.4 88 172-261 154-249 (256)
280 cd03071 PDI_b'_NRX PDIb' famil 95.9 0.069 1.5E-06 39.8 8.0 86 172-260 17-115 (116)
281 cd03029 GRX_hybridPRX5 Glutare 95.9 0.019 4.1E-07 40.5 4.9 65 300-383 2-71 (72)
282 PF03190 Thioredox_DsbH: Prote 95.8 0.025 5.3E-07 46.6 5.8 68 294-363 34-115 (163)
283 cd03069 PDI_b_ERp57 PDIb famil 95.8 0.05 1.1E-06 41.6 7.3 87 160-258 10-102 (104)
284 cd02967 mauD Methylamine utili 95.8 0.022 4.7E-07 44.3 5.4 61 167-230 20-82 (114)
285 PRK13703 conjugal pilus assemb 95.8 0.082 1.8E-06 47.0 9.4 89 172-262 147-243 (248)
286 TIGR02189 GlrX-like_plant Glut 95.8 0.021 4.5E-07 43.2 5.0 55 299-363 8-71 (99)
287 cd02969 PRX_like1 Peroxiredoxi 95.7 0.14 3E-06 43.2 10.4 98 167-266 24-158 (171)
288 PHA03050 glutaredoxin; Provisi 95.6 0.027 5.8E-07 43.3 5.2 52 299-355 13-73 (108)
289 PF11009 DUF2847: Protein of u 95.6 0.048 1E-06 41.2 6.4 88 49-141 2-104 (105)
290 KOG1672 ATP binding protein [P 95.6 0.037 8.1E-07 46.1 6.0 110 142-258 58-176 (211)
291 TIGR02661 MauD methylamine deh 95.5 0.092 2E-06 45.1 8.8 92 167-262 73-181 (189)
292 cd03008 TryX_like_RdCVF Trypar 95.5 0.051 1.1E-06 44.2 6.6 68 167-236 24-122 (146)
293 PLN02399 phospholipid hydroper 95.5 0.11 2.3E-06 46.1 9.1 95 167-261 98-235 (236)
294 cd03066 PDI_b_Calsequestrin_mi 95.5 0.12 2.5E-06 39.4 8.2 91 158-259 8-100 (102)
295 cd03012 TlpA_like_DipZ_like Tl 95.3 0.1 2.2E-06 41.4 8.0 41 167-207 22-64 (126)
296 PRK10877 protein disulfide iso 95.3 0.17 3.7E-06 44.9 9.8 79 296-386 106-230 (232)
297 PTZ00056 glutathione peroxidas 95.1 0.11 2.5E-06 44.9 8.1 96 167-262 38-180 (199)
298 KOG0913 Thiol-disulfide isomer 95.1 0.012 2.6E-07 50.5 2.0 98 152-258 25-124 (248)
299 PRK10638 glutaredoxin 3; Provi 94.9 0.049 1.1E-06 39.6 4.6 49 301-357 4-58 (83)
300 COG0695 GrxC Glutaredoxin and 94.9 0.059 1.3E-06 38.9 4.8 49 301-357 3-59 (80)
301 cd03020 DsbA_DsbC_DsbG DsbA fa 94.9 0.15 3.3E-06 44.1 8.2 25 297-321 77-101 (197)
302 PF08534 Redoxin: Redoxin; In 94.8 0.11 2.4E-06 42.4 6.9 78 167-246 27-134 (146)
303 PRK10382 alkyl hydroperoxide r 94.8 0.067 1.4E-06 45.7 5.6 89 297-387 31-156 (187)
304 TIGR00365 monothiol glutaredox 94.8 0.069 1.5E-06 40.2 5.1 52 297-356 11-72 (97)
305 PF11009 DUF2847: Protein of u 94.6 0.059 1.3E-06 40.8 4.3 77 286-364 7-91 (105)
306 PF13192 Thioredoxin_3: Thiore 94.6 0.17 3.7E-06 36.0 6.6 70 175-257 5-76 (76)
307 cd02991 UAS_ETEA UAS family, E 94.6 0.23 5E-06 38.8 7.8 92 167-261 16-114 (116)
308 PRK15000 peroxidase; Provision 94.4 0.086 1.9E-06 45.7 5.6 89 296-386 33-161 (200)
309 cd03074 PDI_b'_Calsequestrin_C 94.4 0.79 1.7E-05 34.4 9.6 105 282-386 4-119 (120)
310 cd03028 GRX_PICOT_like Glutare 94.4 0.092 2E-06 38.9 4.9 56 297-362 7-72 (90)
311 cd02960 AGR Anterior Gradient 94.4 0.18 3.8E-06 40.1 6.7 69 165-239 20-92 (130)
312 PLN02412 probable glutathione 94.4 0.21 4.5E-06 41.9 7.7 42 167-208 28-71 (167)
313 PF13899 Thioredoxin_7: Thiore 94.4 0.05 1.1E-06 39.5 3.4 65 165-235 14-82 (82)
314 COG4232 Thiol:disulfide interc 94.1 0.12 2.5E-06 51.1 6.3 102 155-259 458-567 (569)
315 cd02972 DsbA_family DsbA famil 94.0 0.19 4.2E-06 37.2 6.1 37 301-339 1-37 (98)
316 PRK13190 putative peroxiredoxi 93.7 0.13 2.8E-06 44.7 5.2 90 297-388 27-155 (202)
317 PF02966 DIM1: Mitosis protein 93.6 0.63 1.4E-05 36.5 8.2 96 287-385 9-115 (133)
318 cd01659 TRX_superfamily Thiore 93.5 0.36 7.8E-06 32.0 6.5 58 173-236 2-63 (69)
319 cd03023 DsbA_Com1_like DsbA fa 93.3 0.19 4.2E-06 41.1 5.6 39 297-338 5-43 (154)
320 PRK10824 glutaredoxin-4; Provi 93.3 0.14 3E-06 39.8 4.2 56 297-362 14-79 (115)
321 cd03016 PRX_1cys Peroxiredoxin 93.2 0.14 3.1E-06 44.4 4.8 42 299-341 28-69 (203)
322 PRK13191 putative peroxiredoxi 93.1 0.17 3.8E-06 44.3 5.2 88 297-386 33-160 (215)
323 PRK13599 putative peroxiredoxi 93.1 0.17 3.7E-06 44.4 5.0 88 297-386 28-155 (215)
324 PTZ00137 2-Cys peroxiredoxin; 93.1 0.21 4.5E-06 45.0 5.6 88 297-386 98-224 (261)
325 TIGR02540 gpx7 putative glutat 92.9 0.76 1.6E-05 37.8 8.5 41 167-207 21-63 (153)
326 PTZ00253 tryparedoxin peroxida 92.5 0.27 5.8E-06 42.6 5.5 44 297-341 36-80 (199)
327 PRK13189 peroxiredoxin; Provis 92.4 0.23 5.1E-06 43.7 5.0 88 297-386 35-162 (222)
328 KOG3414 Component of the U4/U6 92.1 2.2 4.8E-05 33.1 9.0 93 167-264 21-124 (142)
329 PF00578 AhpC-TSA: AhpC/TSA fa 92.0 0.56 1.2E-05 36.8 6.4 44 167-210 24-70 (124)
330 cd03068 PDI_b_ERp72 PDIb famil 92.0 0.93 2E-05 34.8 7.3 89 159-258 9-106 (107)
331 PF13462 Thioredoxin_4: Thiore 91.8 0.59 1.3E-05 38.7 6.6 43 297-339 12-54 (162)
332 COG0526 TrxA Thiol-disulfide i 91.8 0.96 2.1E-05 34.4 7.5 65 168-237 32-100 (127)
333 TIGR02196 GlrX_YruB Glutaredox 91.7 0.82 1.8E-05 31.7 6.4 71 172-257 2-74 (74)
334 PF02966 DIM1: Mitosis protein 91.5 3.1 6.8E-05 32.7 9.6 93 166-262 17-119 (133)
335 cd03015 PRX_Typ2cys Peroxiredo 91.4 1.8 4E-05 36.4 9.3 92 168-259 29-156 (173)
336 PRK11657 dsbG disulfide isomer 91.0 1.9 4.1E-05 38.8 9.4 28 296-323 116-143 (251)
337 PTZ00256 glutathione peroxidas 90.8 2.2 4.8E-05 36.3 9.2 41 168-208 40-83 (183)
338 PRK12759 bifunctional gluaredo 90.7 0.33 7.1E-06 47.2 4.5 49 301-357 4-66 (410)
339 COG2143 Thioredoxin-related pr 90.7 2.3 5E-05 34.4 8.3 91 170-262 43-151 (182)
340 cd00340 GSH_Peroxidase Glutath 90.3 1.2 2.7E-05 36.5 7.1 41 168-208 22-63 (152)
341 cd03019 DsbA_DsbA DsbA family, 90.0 0.58 1.3E-05 39.5 5.0 43 296-340 14-56 (178)
342 KOG1752 Glutaredoxin and relat 89.7 1.1 2.3E-05 34.1 5.6 53 299-357 14-73 (104)
343 KOG3170 Conserved phosducin-li 89.2 4.7 0.0001 34.2 9.3 109 141-258 81-199 (240)
344 cd02974 AhpF_NTD_N Alkyl hydro 88.2 6.8 0.00015 29.2 8.9 74 297-385 18-92 (94)
345 PRK11200 grxA glutaredoxin 1; 87.0 4.4 9.6E-05 29.3 7.4 79 172-260 3-83 (85)
346 PF14595 Thioredoxin_9: Thiore 86.5 1.5 3.3E-05 34.8 4.9 62 171-236 44-107 (129)
347 cd02970 PRX_like2 Peroxiredoxi 86.4 3.2 6.9E-05 33.6 7.1 42 169-210 24-68 (149)
348 PF07449 HyaE: Hydrogenase-1 e 86.2 1.7 3.6E-05 33.2 4.7 78 153-236 11-92 (107)
349 cd03017 PRX_BCP Peroxiredoxin 86.1 3.4 7.4E-05 33.1 7.1 41 168-208 23-66 (140)
350 cd03014 PRX_Atyp2cys Peroxired 86.0 1.8 3.9E-05 35.0 5.3 41 168-209 26-68 (143)
351 KOG2640 Thioredoxin [Function 85.3 0.47 1E-05 42.9 1.6 85 297-388 76-163 (319)
352 PRK09437 bcp thioredoxin-depen 85.2 5.4 0.00012 32.6 7.9 42 167-208 29-73 (154)
353 cd03031 GRX_GRX_like Glutaredo 84.8 1.9 4.1E-05 35.2 4.8 36 301-344 2-43 (147)
354 TIGR01626 ytfJ_HI0045 conserve 84.8 4.1 8.9E-05 34.6 7.0 85 168-256 59-176 (184)
355 KOG2501 Thioredoxin, nucleored 84.7 3 6.4E-05 34.1 5.7 43 167-209 32-80 (157)
356 PF00837 T4_deiodinase: Iodoth 84.5 13 0.00028 32.8 9.9 86 247-335 53-140 (237)
357 TIGR02180 GRX_euk Glutaredoxin 84.4 2.5 5.4E-05 30.3 4.9 57 172-232 1-60 (84)
358 cd03036 ArsC_like Arsenate Red 84.3 0.75 1.6E-05 35.5 2.2 79 302-388 2-89 (111)
359 cd02977 ArsC_family Arsenate R 84.1 1.2 2.6E-05 34.0 3.2 81 301-389 1-89 (105)
360 KOG3425 Uncharacterized conser 83.8 5.1 0.00011 30.9 6.2 69 166-234 23-103 (128)
361 PRK10954 periplasmic protein d 83.7 1.6 3.5E-05 38.0 4.2 41 297-339 37-80 (207)
362 TIGR02200 GlrX_actino Glutared 83.5 3.3 7.2E-05 29.0 5.2 71 172-256 2-75 (77)
363 PRK00522 tpx lipid hydroperoxi 83.4 2.6 5.7E-05 35.2 5.3 55 168-223 44-100 (167)
364 PF05768 DUF836: Glutaredoxin- 83.2 2.6 5.7E-05 30.3 4.5 76 174-257 3-81 (81)
365 PRK10382 alkyl hydroperoxide r 83.2 8.8 0.00019 32.8 8.4 93 168-260 31-156 (187)
366 PRK10606 btuE putative glutath 83.1 20 0.00042 30.5 10.4 40 168-208 25-66 (183)
367 TIGR03137 AhpC peroxiredoxin. 82.0 12 0.00026 31.9 8.9 91 168-258 31-154 (187)
368 cd03018 PRX_AhpE_like Peroxire 80.9 6.5 0.00014 31.8 6.7 41 169-209 29-72 (149)
369 cd03035 ArsC_Yffb Arsenate Red 79.3 2.5 5.4E-05 32.3 3.4 36 301-344 1-36 (105)
370 cd03040 GST_N_mPGES2 GST_N fam 76.8 12 0.00026 26.2 6.3 72 301-387 2-76 (77)
371 PRK01655 spxA transcriptional 76.7 3.4 7.4E-05 33.0 3.6 80 301-388 2-88 (131)
372 KOG3171 Conserved phosducin-li 76.3 7.5 0.00016 33.3 5.6 79 152-237 139-222 (273)
373 PRK13190 putative peroxiredoxi 75.9 21 0.00046 30.9 8.6 86 176-261 36-155 (202)
374 PHA03075 glutaredoxin-like pro 75.3 5.5 0.00012 30.4 4.1 30 298-327 2-31 (123)
375 cd03041 GST_N_2GST_N GST_N fam 75.1 14 0.0003 26.1 6.2 69 301-386 2-76 (77)
376 PF13778 DUF4174: Domain of un 74.7 30 0.00064 27.0 8.4 86 171-259 11-111 (118)
377 cd02968 SCO SCO (an acronym fo 74.0 7.7 0.00017 31.1 5.2 42 167-208 21-68 (142)
378 PRK15000 peroxidase; Provision 73.9 25 0.00054 30.4 8.6 93 168-260 34-162 (200)
379 PRK12559 transcriptional regul 73.3 5.3 0.00011 31.9 3.9 80 301-388 2-88 (131)
380 TIGR01617 arsC_related transcr 72.7 4.6 9.9E-05 31.5 3.4 79 302-389 2-90 (117)
381 PF06110 DUF953: Eukaryotic pr 71.5 9.9 0.00021 29.7 4.9 68 167-236 18-99 (119)
382 PF13417 GST_N_3: Glutathione 70.5 26 0.00055 24.5 6.6 71 303-390 1-74 (75)
383 cd03032 ArsC_Spx Arsenate Redu 70.4 7.3 0.00016 30.2 4.1 80 301-388 2-88 (115)
384 cd03016 PRX_1cys Peroxiredoxin 68.2 30 0.00065 29.9 7.9 84 177-260 35-154 (203)
385 PF03190 Thioredox_DsbH: Prote 67.5 7.3 0.00016 32.3 3.6 93 141-238 8-114 (163)
386 cd03060 GST_N_Omega_like GST_N 66.7 21 0.00046 24.5 5.5 49 302-356 2-53 (71)
387 cd03037 GST_N_GRX2 GST_N famil 65.2 27 0.00059 23.9 5.8 20 303-322 3-22 (71)
388 PF13743 Thioredoxin_5: Thiore 65.1 12 0.00026 31.6 4.6 36 303-340 2-37 (176)
389 PRK13191 putative peroxiredoxi 63.3 53 0.0012 28.7 8.5 89 171-259 35-160 (215)
390 cd02971 PRX_family Peroxiredox 62.6 17 0.00037 28.9 5.0 43 167-209 21-66 (140)
391 COG3634 AhpF Alkyl hydroperoxi 62.1 1.4E+02 0.0031 28.2 12.0 161 180-385 31-196 (520)
392 PRK13344 spxA transcriptional 62.1 13 0.00029 29.6 4.1 81 301-389 2-89 (132)
393 cd02976 NrdH NrdH-redoxin (Nrd 62.1 27 0.00058 23.7 5.4 69 172-255 2-72 (73)
394 cd00570 GST_N_family Glutathio 61.9 21 0.00046 23.7 4.8 50 302-357 2-55 (71)
395 TIGR02183 GRXA Glutaredoxin, G 61.8 27 0.00059 25.3 5.5 79 172-260 2-82 (86)
396 PRK13189 peroxiredoxin; Provis 61.8 73 0.0016 28.0 9.1 90 171-260 37-163 (222)
397 COG0278 Glutaredoxin-related p 61.6 14 0.0003 27.6 3.7 57 298-362 15-80 (105)
398 PTZ00137 2-Cys peroxiredoxin; 61.2 77 0.0017 28.7 9.2 91 170-260 100-225 (261)
399 cd03013 PRX5_like Peroxiredoxi 60.5 19 0.0004 29.7 4.9 46 298-344 31-78 (155)
400 PF00462 Glutaredoxin: Glutare 57.3 18 0.00038 24.0 3.5 51 174-232 3-55 (60)
401 PF02630 SCO1-SenC: SCO1/SenC; 55.0 37 0.0008 28.5 5.9 49 296-344 51-101 (174)
402 cd02066 GRX_family Glutaredoxi 53.8 25 0.00055 23.6 4.1 53 172-232 2-56 (72)
403 TIGR02190 GlrX-dom Glutaredoxi 52.9 34 0.00074 24.2 4.6 54 171-232 9-63 (79)
404 PTZ00253 tryparedoxin peroxida 52.4 96 0.0021 26.6 8.2 92 168-259 36-163 (199)
405 PF06053 DUF929: Domain of unk 52.0 49 0.0011 29.6 6.3 60 293-359 54-113 (249)
406 cd03033 ArsC_15kD Arsenate Red 51.0 22 0.00048 27.5 3.6 36 301-344 2-37 (113)
407 PRK13599 putative peroxiredoxi 50.7 1.4E+02 0.003 26.1 9.0 83 177-259 38-155 (215)
408 KOG2507 Ubiquitin regulatory p 49.9 88 0.0019 30.1 7.7 86 295-385 16-109 (506)
409 cd03059 GST_N_SspA GST_N famil 48.9 46 0.001 22.7 4.8 67 302-385 2-71 (73)
410 TIGR00762 DegV EDD domain prot 48.0 1E+02 0.0022 28.1 8.0 125 30-168 40-168 (275)
411 PRK10329 glutaredoxin-like pro 47.9 84 0.0018 22.4 6.0 72 174-260 5-77 (81)
412 COG4545 Glutaredoxin-related p 46.2 20 0.00043 25.1 2.3 21 302-322 5-25 (85)
413 TIGR02742 TrbC_Ftype type-F co 46.0 62 0.0013 25.7 5.4 51 338-388 58-116 (130)
414 cd03051 GST_N_GTT2_like GST_N 45.8 13 0.00029 25.5 1.5 50 302-357 2-57 (74)
415 cd03034 ArsC_ArsC Arsenate Red 45.6 27 0.00058 26.9 3.3 79 301-388 1-87 (112)
416 TIGR00014 arsC arsenate reduct 45.0 28 0.0006 26.9 3.3 78 302-388 2-88 (114)
417 cd03419 GRX_GRXh_1_2_like Glut 44.4 37 0.0008 23.9 3.8 55 172-232 2-59 (82)
418 TIGR02194 GlrX_NrdH Glutaredox 44.3 48 0.001 22.8 4.2 66 175-254 4-70 (72)
419 cd02974 AhpF_NTD_N Alkyl hydro 44.0 1.3E+02 0.0029 22.3 8.3 73 170-259 20-93 (94)
420 cd02978 KaiB_like KaiB-like fa 43.0 76 0.0016 22.3 4.8 54 173-231 4-60 (72)
421 cd03045 GST_N_Delta_Epsilon GS 42.9 56 0.0012 22.4 4.4 49 302-356 2-56 (74)
422 PF13462 Thioredoxin_4: Thiore 40.0 71 0.0015 25.9 5.4 40 170-209 13-56 (162)
423 cd03029 GRX_hybridPRX5 Glutare 38.9 75 0.0016 21.8 4.5 67 173-256 4-71 (72)
424 COG1393 ArsC Arsenate reductas 36.4 39 0.00084 26.3 2.9 36 301-344 3-38 (117)
425 COG3411 Ferredoxin [Energy pro 34.1 68 0.0015 21.8 3.3 35 352-393 17-51 (64)
426 PF09673 TrbC_Ftype: Type-F co 33.7 1E+02 0.0022 23.8 4.9 45 314-360 36-80 (113)
427 COG2761 FrnE Predicted dithiol 31.9 84 0.0018 27.6 4.5 43 345-394 178-220 (225)
428 cd02978 KaiB_like KaiB-like fa 31.0 1.8E+02 0.0038 20.5 5.1 58 300-358 3-62 (72)
429 PF01323 DSBA: DSBA-like thior 30.3 69 0.0015 27.0 3.8 38 300-338 1-38 (193)
430 PRK10877 protein disulfide iso 29.4 59 0.0013 28.8 3.3 40 213-259 191-230 (232)
431 COG1651 DsbG Protein-disulfide 28.8 2E+02 0.0044 25.4 6.7 43 298-341 85-127 (244)
432 cd03025 DsbA_FrnE_like DsbA fa 28.6 1E+02 0.0023 25.9 4.7 27 301-327 3-29 (193)
433 TIGR02654 circ_KaiB circadian 28.5 1.2E+02 0.0026 22.2 4.1 58 174-236 8-67 (87)
434 cd03055 GST_N_Omega GST_N fami 27.8 1.7E+02 0.0036 21.1 5.0 52 300-357 18-72 (89)
435 PF04592 SelP_N: Selenoprotein 27.3 1.2E+02 0.0026 26.8 4.6 48 296-343 25-74 (238)
436 COG2761 FrnE Predicted dithiol 27.2 1.4E+02 0.003 26.3 5.0 44 216-266 176-219 (225)
437 PRK10853 putative reductase; P 27.1 77 0.0017 24.7 3.2 36 301-344 2-37 (118)
438 cd03019 DsbA_DsbA DsbA family, 27.1 1.1E+02 0.0024 25.3 4.5 39 170-208 17-56 (178)
439 PF08806 Sep15_SelM: Sep15/Sel 26.8 84 0.0018 22.4 3.0 34 115-148 42-75 (78)
440 PF06764 DUF1223: Protein of u 25.0 1.7E+02 0.0037 25.3 5.2 80 301-390 2-101 (202)
441 COG1225 Bcp Peroxiredoxin [Pos 24.0 1.5E+02 0.0032 24.5 4.4 53 171-223 32-88 (157)
442 cd03023 DsbA_Com1_like DsbA fa 23.9 1.8E+02 0.004 23.0 5.2 35 172-207 9-44 (154)
443 PF00255 GSHPx: Glutathione pe 23.7 2.7E+02 0.0058 21.3 5.5 45 296-342 20-64 (108)
444 COG1999 Uncharacterized protei 23.6 2.5E+02 0.0055 24.3 6.1 49 296-344 66-117 (207)
445 PRK09301 circadian clock prote 23.2 2.6E+02 0.0057 21.2 5.2 69 173-248 10-80 (103)
446 KOG2868 Decapping enzyme compl 22.9 3.3E+02 0.0071 25.4 6.6 80 116-198 56-135 (335)
447 PF13743 Thioredoxin_5: Thiore 22.3 67 0.0015 27.0 2.2 36 215-252 138-174 (176)
448 PRK10026 arsenate reductase; P 22.2 98 0.0021 25.0 3.0 36 301-344 4-39 (141)
449 PF03960 ArsC: ArsC family; I 22.0 1.3E+02 0.0027 22.9 3.5 76 304-388 1-85 (110)
450 TIGR02742 TrbC_Ftype type-F co 21.9 3.9E+02 0.0084 21.3 6.2 27 95-124 55-81 (130)
451 TIGR01616 nitro_assoc nitrogen 21.6 1.1E+02 0.0024 24.1 3.2 37 300-344 2-38 (126)
452 cd04436 DEP_fRgd2 DEP (Disheve 21.4 1.7E+02 0.0036 21.3 3.6 30 26-60 25-54 (84)
453 PRK11657 dsbG disulfide isomer 20.0 1.4E+02 0.003 26.8 3.9 40 215-257 210-249 (251)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-63 Score=467.76 Aligned_cols=371 Identities=44% Similarity=0.717 Sum_probs=340.6
Q ss_pred CCCcceeeeccCcc-cccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcch
Q 013976 1 MSWRTSTTFRASRR-FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSE 79 (432)
Q Consensus 1 ~~~Ptl~~f~~g~~-~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~ 79 (432)
.|||||++||+|+. .. |.|+|++++|+.||+++.+|+++.|++.++++.++...+++|||||.+..+..
T Consensus 98 ~gyPTlkiFrnG~~~~~----------Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~ 167 (493)
T KOG0190|consen 98 RGYPTLKIFRNGRSAQD----------YNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA 167 (493)
T ss_pred CCCCeEEEEecCCccee----------ccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch
Confidence 48999999999986 44 99999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCC
Q 013976 80 SEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTR 158 (432)
Q Consensus 80 ~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~ 158 (432)
..|..+| ++++++.|+++++.++++.+++..++ .+.+++++..|+....| .|.++.+.|..||+.+++|+|.++|.
T Consensus 168 -~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 168 -ESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTV 244 (493)
T ss_pred -HHHHHHHHhccccceeeccCcHhHHhhccCCCCC-cceEEeccccccchhhc-ccccCHHHHHHHHHHhcccccceecc
Confidence 6666655 99999999999999999999997633 45599999999899999 99999999999999999999999999
Q ss_pred CchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976 159 ENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~ 236 (432)
++...++++..+..++||... ...+.+++.+.++|++|+++++|+.+|... +.+.++.||+.....|..++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~ 321 (493)
T KOG0190|consen 245 ANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNE 321 (493)
T ss_pred cccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHH---hhHHHHhcCcccccCCeeEEeecc
Confidence 999999888777777777655 488999999999999999999999997776 445899999997777755566666
Q ss_pred CCceecCCCC-CCHHHHHHHHHHHhcCCcCccccCCCCCCCCC-CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhh
Q 013976 237 DAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQA 314 (432)
Q Consensus 237 ~~~~y~~~~~-~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~-~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~ 314 (432)
++.+|.+.++ .+.++|..|+.+++.|+++|+++|+|+|++++ ++|+.|+++||++.+.+.+++|||.||||||+||++
T Consensus 322 ~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~ 401 (493)
T KOG0190|consen 322 DGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKA 401 (493)
T ss_pred ccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhh
Confidence 7788998765 88899999999999999999999999999997 889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 315 FEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 315 ~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
+.|+|++||..|++.+++.+++||++.|+.+...++++|||.+||.|.+. +|+.|.|.++.+.+..||.++++
T Consensus 402 laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 402 LAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred hhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence 99999999999999889999999999999999999999999999999987 89999999999999999999998
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=4.1e-48 Score=383.19 Aligned_cols=374 Identities=37% Similarity=0.629 Sum_probs=326.7
Q ss_pred CCCcceeeeccCcc-cccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcch
Q 013976 1 MSWRTSTTFRASRR-FTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSE 79 (432)
Q Consensus 1 ~~~Ptl~~f~~g~~-~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~ 79 (432)
++|||+++|++|+. .. .|.|.++.+.|.+|+.+.+.+++..+++.++++.++..+++.+|+|+.+.+...
T Consensus 74 ~~~Pt~~~~~~g~~~~~---------~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 144 (462)
T TIGR01130 74 SGYPTLKIFRNGEDSVS---------DYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSEL 144 (462)
T ss_pred ccccEEEEEeCCcccee---------EecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHH
Confidence 47999999999987 22 399999999999999999999999999999999999999999999999878889
Q ss_pred HHHHHHHh-ccCCCce-EEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCce--ecccCCCC--CHHHHHHHHHhcCCCce
Q 013976 80 SEVLADAS-RLEDDVN-FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLV 153 (432)
Q Consensus 80 ~~~f~~~a-~~~~~~~-F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~--~~y~~g~~--~~~~l~~fi~~~~~p~v 153 (432)
+..|.++| .....+. |+.+.+..++..++... +.+++|+..++.. +.| .|+. +.++|..||..++.|++
T Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v 219 (462)
T TIGR01130 145 NDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLV 219 (462)
T ss_pred HHHHHHHHHHhhhccceEEecCCHHHHhhcCCCC----CcEEEecccccccccccc-cCcccCCHHHHHHHHHHcCCCce
Confidence 99999999 5556665 55566778888888764 7788888765443 356 6654 56899999999999999
Q ss_pred eecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 154 TIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.+++.+++..++..+ +.+++|+... ..++.+...++++|+++++ .+.|+++|+.. .+.+++.+|++....|+
T Consensus 220 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~ 295 (462)
T TIGR01130 220 GEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPA 295 (462)
T ss_pred EeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCce
Confidence 999999999988776 5555554433 3468999999999999997 89999999987 55899999999767899
Q ss_pred EEEEeCCCCceecCCC-CCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCC
Q 013976 230 LAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPW 308 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~-~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~ 308 (432)
+++++..+..+|.+.+ .++.++|.+|++++++|++++.++|+++|+..++.+..|++.+|++.+.+.++++||.||++|
T Consensus 296 ~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~w 375 (462)
T TIGR01130 296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPW 375 (462)
T ss_pred EEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCC
Confidence 9999776546788876 799999999999999999999999999998888899999999999999888999999999999
Q ss_pred ChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 309 CGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 309 c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
|++|+.+.|.|++++..+++. ..+.|+.+||+.++...+.+.++|++++|++|.+. +++.|.|..+.+.|.+||.+++
T Consensus 376 C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 376 CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcC
Confidence 999999999999999999873 37999999999998866999999999999999876 6789999999999999999999
Q ss_pred CCCCcc
Q 013976 388 SIPFKI 393 (432)
Q Consensus 388 ~~~~~~ 393 (432)
+.+.+.
T Consensus 455 ~~~~~~ 460 (462)
T TIGR01130 455 TFPLEG 460 (462)
T ss_pred CCCCcC
Confidence 887764
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=4.7e-46 Score=369.16 Aligned_cols=356 Identities=30% Similarity=0.520 Sum_probs=307.8
Q ss_pred CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976 1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES 80 (432)
Q Consensus 1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~ 80 (432)
.||||+++|++|.... |.|.++++.|++||.+.++|++..|++.+++..+.....+++++++.+.+...+
T Consensus 105 ~~~Pt~~~~~~g~~~~----------y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (477)
T PTZ00102 105 RGYPTIKFFNKGNPVN----------YSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELY 174 (477)
T ss_pred CcccEEEEEECCceEE----------ecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHH
Confidence 4899999999997666 999999999999999999999999999999988878888899999998888899
Q ss_pred HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCC
Q 013976 81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRE 159 (432)
Q Consensus 81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~ 159 (432)
+.|.++| .+++.+.|+...+. . .+.+++|+..+.....| . ..+.++|..||..++.|++.+++.+
T Consensus 175 ~~f~~~a~~~~~~~~F~~~~~~--------~----~~~~~~~~~~~~~~~~~-~-~~~~~~l~~fI~~~~~P~~~~~~~~ 240 (477)
T PTZ00102 175 KKFEEVADKHREHAKFFVKKHE--------G----KNKIYVLHKDEEGVELF-M-GKTKEELEEFVSTESFPLFAEINAE 240 (477)
T ss_pred HHHHHHHHhccccceEEEEcCC--------C----CCcEEEEecCCCCcccC-C-CCCHHHHHHHHHHcCCCceeecCcc
Confidence 9999988 67788899876542 1 26788898755444444 4 4588999999999999999999999
Q ss_pred chhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976 160 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 239 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~ 239 (432)
++..++..+.. +++++....+.+.+.+.++++|+++++++.|+++|+.... .++++.+|+... |++++.... .
T Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~--~~~~~~~gi~~~--P~~~i~~~~--~ 313 (477)
T PTZ00102 241 NYRRYISSGKD-LVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG--SHAKEHLLIEEF--PGLAYQSPA--G 313 (477)
T ss_pred chHHHhcCCcc-EEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechhcc--hhHHHhcCcccC--ceEEEEcCC--c
Confidence 99998887753 3333333366778899999999999999999999999843 247899999886 999887643 2
Q ss_pred eecCCCC----CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhh
Q 013976 240 KHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF 315 (432)
Q Consensus 240 ~y~~~~~----~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~ 315 (432)
+|.+.+. ++.++|.+|++++++|+++++++|+++|+..++.|..|++++|++.+.+.+++++|.|||+||++|+.+
T Consensus 314 ~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~ 393 (477)
T PTZ00102 314 RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNL 393 (477)
T ss_pred ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHH
Confidence 5655543 789999999999999999999999999988888999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976 316 EPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 316 ~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
.|.|.++|..+++...+.++.+|++.++. ..++++++|++++|++|.+ .++.|.|.++.+.|.+||+++++.
T Consensus 394 ~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 394 EPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER--TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred HHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc--ceeEecCcCCHHHHHHHHHHcCCC
Confidence 99999999999876679999999999887 5799999999999999876 466899999999999999999976
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.95 E-value=2.2e-27 Score=204.31 Aligned_cols=254 Identities=20% Similarity=0.245 Sum_probs=202.1
Q ss_pred CCCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976 1 MSWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSES 80 (432)
Q Consensus 1 ~~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~ 80 (432)
|.||||++||+|.... .+|+|.|+++++.+||++++..++.++.+.++++.+..-.+-.+||||.+.+++.+
T Consensus 71 ~KyPTlKvfrnG~~~~--------rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey 142 (375)
T KOG0912|consen 71 NKYPTLKVFRNGEMMK--------REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY 142 (375)
T ss_pred ccCceeeeeeccchhh--------hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH
Confidence 6899999999998776 68999999999999999999999999999999999988778899999999999999
Q ss_pred HHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCC-CceecccCCCC-CHHHHHHHHHhcCCCceeecC
Q 013976 81 EVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET-EKISYFADGKF-DKSTIADFVFSNKLPLVTIFT 157 (432)
Q Consensus 81 ~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~-~~~~~y~~g~~-~~~~l~~fi~~~~~p~v~~l~ 157 (432)
+.|+.+| -+++++.|.+..+.....+ ... ..+ +.++++.- +..+.| .|++ +.+.|..||...+.|+|.++|
T Consensus 143 ~~~~kva~~lr~dc~f~V~~gD~~~~~-~~~---~~~-~~~f~pd~~~~~~~f-~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 143 DNLRKVASLLRDDCVFLVGFGDLLKPH-EPP---GKN-ILVFDPDHSEPNHEF-LGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHHhhccEEEeeccccccCC-CCC---CCc-eEEeCCCcCCcCccc-ccccccHHHHHHHHHhcchhhhhhhh
Confidence 9999999 6899999999875433221 111 112 56666533 333478 8887 589999999999999999999
Q ss_pred CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976 158 RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 234 (432)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~ 234 (432)
-+|.+.+...|.|.+|+|..+. +......--..+++++.+ .|+|...|+.. .++.+.++|-+..++|.|+|-.
T Consensus 217 FeN~EELtEEGlPflILf~~kd-D~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~---f~hpL~HlgKs~~DLPviaIDs 292 (375)
T KOG0912|consen 217 FENAEELTEEGLPFLILFRKKD-DKESEKIFKNAIARELDDETLAINFLTADGKV---FKHPLRHLGKSPDDLPVIAIDS 292 (375)
T ss_pred hccHHHHhhcCCceEEEEecCC-cccHHHHHHHHHHHHhhhhhhccceeecCcce---ecchHHHhCCCcccCcEEEeec
Confidence 9999999999998888877655 222222222335555543 49999999998 4577999999999999999975
Q ss_pred CCCCceecC---CCCCCHHHHHHHHHHHhcCCcCccccCCCCC
Q 013976 235 NDDAKKHIL---DGELTLDKIKTFGEDFLEGKLKPFFKSDPIP 274 (432)
Q Consensus 235 ~~~~~~y~~---~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p 274 (432)
... .|.+ +.-..+..|.+|+.+..+|++.+.+...+-|
T Consensus 293 F~H--mylfp~f~di~~pGkLkqFv~DL~sgklHrefH~~~d~ 333 (375)
T KOG0912|consen 293 FRH--MYLFPDFNDINIPGKLKQFVADLHSGKLHREFHEGPDP 333 (375)
T ss_pred cce--eeecCchhhhcCccHHHHHHHHHhCchhhHHhhcCCCC
Confidence 543 4444 2345678999999999999999888776555
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.91 E-value=5.7e-22 Score=174.84 Aligned_cols=248 Identities=17% Similarity=0.244 Sum_probs=186.3
Q ss_pred cceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhc-CCeEEEEEecCCCcchHHH
Q 013976 4 RTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEV 82 (432)
Q Consensus 4 Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~-~~~~vv~f~~~~~~~~~~~ 82 (432)
++|.+|++|..+. |.|.++++-++.||...+..||..|++..+++.|-+. ..+-+||||.+.+++.+++
T Consensus 114 ~SiyVfkd~~~IE----------ydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~ 183 (383)
T PF01216_consen 114 GSIYVFKDGEVIE----------YDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKE 183 (383)
T ss_dssp TEEEEEETTEEEE----------E-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHH
T ss_pred CcEEEEECCcEEE----------ecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHH
Confidence 6899999999999 9999999999999999999999999999999999874 4789999999998999999
Q ss_pred HHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCch
Q 013976 83 LADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENA 161 (432)
Q Consensus 83 f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~ 161 (432)
|.+|| .++..+.|+.+.+..+|++++++. ..+-+|+++.+.+.+.+..+.+..+|..||..|..|..+.++++++
T Consensus 184 FeeAAe~F~p~IkFfAtfd~~vAk~L~lK~----nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m 259 (383)
T PF01216_consen 184 FEEAAEHFQPYIKFFATFDKKVAKKLGLKL----NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDM 259 (383)
T ss_dssp HHHHHHHCTTTSEEEEE-SHHHHHHHT-ST----T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGH
T ss_pred HHHHHHhhcCceeEEEEecchhhhhcCccc----cceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhh
Confidence 99999 788999999999999999999975 7899999998888887566778999999999999999999999997
Q ss_pred hhhccCCC-cceEEEEEeC--cchhhhHHHHHHHHHhccC--ceEEEEEecCCccc-ccchhhhhCCCCCCCcEEEEEeC
Q 013976 162 PSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 162 ~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~-~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
........ -.+|+.|+.. ++...+...++++|+...+ .+.++|+|.++... -+-+-+.|||.-. -|+|.+.+-
T Consensus 260 ~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnv 338 (383)
T PF01216_consen 260 FETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNV 338 (383)
T ss_dssp HHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEET
T ss_pred hhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEec
Confidence 66544332 3467778877 6678899999999999875 59999999988420 0111277899876 499999987
Q ss_pred CC--CceecCCC---CCCHHHHHHHHHHHhcCCcCc
Q 013976 236 DD--AKKHILDG---ELTLDKIKTFGEDFLEGKLKP 266 (432)
Q Consensus 236 ~~--~~~y~~~~---~~~~~~i~~fi~~~~~g~l~~ 266 (432)
.. +.++.|.+ ..+.+.+..||+++++|++..
T Consensus 339 tdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 339 TDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp TTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred cccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 65 45667754 258999999999999999865
No 6
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.90 E-value=1.2e-22 Score=175.40 Aligned_cols=179 Identities=31% Similarity=0.497 Sum_probs=156.5
Q ss_pred ecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCC-CCHHHHHHHHHhcC
Q 013976 72 LNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNK 149 (432)
Q Consensus 72 ~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~-~~~~~l~~fi~~~~ 149 (432)
|++.++.+++.|.++| .+++++.|+++.++++++.+++.. |+|++||..++....| .|+ ++.++|.+||..++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVY-DGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEE-SSSTTSHHHHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceec-ccccCCHHHHHHHHHHhc
Confidence 5677788999999999 788899999999999999999986 9999999988888999 887 89999999999999
Q ss_pred CCceeecCCCchhhhccCCCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976 150 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 227 (432)
Q Consensus 150 ~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 227 (432)
.|+|.++|.+++..++..+.+.+++++... ...+.+...++++|+++++++.|+++|+.. .+++++.+|+++..+
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDEDDL 152 (184)
T ss_dssp STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTTSSS
T ss_pred cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCCccC
Confidence 999999999999999999877566666543 677889999999999999999999999996 567899999998889
Q ss_pred cEEEEEeCCCCce-ecCCCCCCHHHHHHHHHH
Q 013976 228 KVLAYTGNDDAKK-HILDGELTLDKIKTFGED 258 (432)
Q Consensus 228 P~i~i~~~~~~~~-y~~~~~~~~~~i~~fi~~ 258 (432)
|++++++...+.. |.+.+.++.++|.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999998665443 445889999999999975
No 7
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-22 Score=193.07 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=185.1
Q ss_pred chhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976 160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 238 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~ 238 (432)
...........+++.||++| ++|+++.+.|.+++..+++.+.++.|||+. ++.+|+.|++.++ |++.++.++ .
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~-~ 112 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG-K 112 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC-C
Confidence 33444566668899999999 999999999999999999999999999999 6799999999999 999999877 5
Q ss_pred ceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHH
Q 013976 239 KKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT 318 (432)
Q Consensus 239 ~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~ 318 (432)
....+.|..+.+.+..|+...+......... +.+..++..+|...+.+.+.+++|.||+|||++|+.+.|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~ 183 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEPSVKKLVE---------GEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPE 183 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhccccccccC---------CceEEccccchhhhhhccCcceEEEEeccccHHhhhcChH
Confidence 6778889999999999999987644332111 1488999999999998889999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976 319 YNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 390 (432)
Q Consensus 319 ~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 390 (432)
|.+++..+.....+.++.+||+.... ..+.+..+|++.+|++|.. -...|.|.++.+.|.+|+.+.....
T Consensus 184 ~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 184 WEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999754589999999984443 6899999999999999987 1337889999999999999998875
No 8
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.81 E-value=1.2e-18 Score=153.16 Aligned_cols=185 Identities=11% Similarity=0.067 Sum_probs=139.2
Q ss_pred eEEEEE---eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976 172 QLLLFA---VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL 247 (432)
Q Consensus 172 ~i~~~~---~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~ 247 (432)
+++|++ +| ++|+.+.+.++++|..+. ++.+..++++... .+.+++.|+|... |+++++.++......+.|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~-~~~l~~~~~V~~~--Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPE-DKEEAEKYGVERV--PTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcc-cHHHHHHcCCCcc--CEEEEEeCCeeeEEEEeecC
Confidence 556777 78 999999999999999995 4554455554322 6799999999998 99999876643224678888
Q ss_pred CHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHh
Q 013976 248 TLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHL 326 (432)
Q Consensus 248 ~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~ 326 (432)
+.+.+.+|++.+++- ... -..|+..+.+. +...+++ .++.||++||++|+.+.+.+++++...
T Consensus 99 ~~~~l~~~i~~~~~~--~~~-------------~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~ 162 (215)
T TIGR02187 99 AGYEFAALIEDIVRV--SQG-------------EPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN 162 (215)
T ss_pred CHHHHHHHHHHHHHh--cCC-------------CCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence 889999999988631 100 01233333333 2233445 555599999999999999999998874
Q ss_pred cCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976 327 RGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 327 ~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
. ++.+..+|.+.+.. .+++|.++||++++.+|. .+.|..+.+.+.+||.+
T Consensus 163 ~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 D---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred C---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence 2 59999999988877 689999999999987553 38898999999999875
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=2.9e-19 Score=138.75 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=90.1
Q ss_pred CCceEEEecccchhhh--hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCC
Q 013976 278 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGF 352 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~--~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~ 352 (432)
.+.|..|+..+|++.+ ...++.+||.||||||++|+.+.|.|+++|+.+++ .+.|++|||+.+.. .+++|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4569999999999963 57789999999999999999999999999999987 69999999998875 37999999
Q ss_pred ceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976 353 PTILFFPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
||+++|++|.. +..|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~---~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG---PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc---ceEEeCCCCHHHHHhhC
Confidence 99999998874 45899999999999874
No 10
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-19 Score=141.02 Aligned_cols=104 Identities=23% Similarity=0.416 Sum_probs=96.6
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
.+..++..+|++.+.+.+.||+|.|||+||++|+.+.|.+++++..|.+ .+.|+++|.+++.. .+|.|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4667788999999999999999999999999999999999999999987 79999999999888 7999999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
|++|.+.+ .+.|..+.+.|.+||++.+.
T Consensus 122 fknGe~~d---~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD---RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee---eecccCCHHHHHHHHHHHhc
Confidence 99999876 89999999999999998753
No 11
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.79 E-value=5.2e-18 Score=146.39 Aligned_cols=238 Identities=15% Similarity=0.163 Sum_probs=172.4
Q ss_pred CCcceeeeccCcccccCCCcccCccCCCCCChhHHHHHHHHhhCCCceeeCC-HHHHHHHhhcCCeEEEEEecCCCcchH
Q 013976 2 SWRTSTTFRASRRFTSSSTASIKLIMAAAPSKDAIVTWIKKKIGPGIYNITT-LDEAERVLTSETKVVLGYLNSLVGSES 80 (432)
Q Consensus 2 ~~Ptl~~f~~g~~~~~~~~~~~~~~Y~G~~~~~~i~~~l~~~~~~~~~~i~~-~~~l~~~~~~~~~~vv~f~~~~~~~~~ 80 (432)
||||+++||+|-.+. |+|+|+.++|++|..|..++.+..|++ .-+++.+.....+..|.|..+ .+++.
T Consensus 100 GYPTIk~~kgd~a~d----------YRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtg-e~PL~ 168 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAID----------YRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTG-EGPLF 168 (468)
T ss_pred CCceEEEecCCeeee----------cCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCC-CCcHH
Confidence 899999999999999 999999999999999999998888875 334455556677777755544 68999
Q ss_pred HHHHHHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCc
Q 013976 81 EVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN 160 (432)
Q Consensus 81 ~~f~~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~ 160 (432)
..|.++|...-.+....+.+++++..++--. ..|.+.+|+ |+....+ ..-+.++|..||.....|.+-..+.-+
T Consensus 169 d~fidAASe~~~~a~FfSaseeVaPe~~~~k--empaV~VFK--Detf~i~--de~dd~dLseWinRERf~~fLa~dgfl 242 (468)
T KOG4277|consen 169 DAFIDAASEKFSVARFFSASEEVAPEENDAK--EMPAVAVFK--DETFEIE--DEGDDEDLSEWINRERFPGFLAADGFL 242 (468)
T ss_pred HHHHHHhhhheeeeeeeccccccCCcccchh--hccceEEEc--cceeEEE--ecCchhHHHHHHhHhhccchhhcccch
Confidence 9999999443344444444556665544221 259999999 4555555 233557899999999999998888888
Q ss_pred hhhhccCCCcceEEEEEeC------cchhhhHHHHHHHHHhccC------ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 161 APSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKG------KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~a~~~~~------~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
+..+-.+++.+.+.+-... .....+....+++|+.+++ .+.|+++|+.+ ++..+.+.....|
T Consensus 243 L~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD------~~nqilM~als~P 316 (468)
T KOG4277|consen 243 LAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND------LANQILMAALSEP 316 (468)
T ss_pred HHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH------HHHHHHHHhhcCC
Confidence 7777667755444433222 2356677888889988874 59999999775 4455555555569
Q ss_pred EEEEEeCCCCceecCC---CCCCHHHHHHHHHHHhcC
Q 013976 229 VLAYTGNDDAKKHILD---GELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 229 ~i~i~~~~~~~~y~~~---~~~~~~~i~~fi~~~~~g 262 (432)
++++++......|.-. ...+.++|.+||++-..|
T Consensus 317 ~l~i~NtsnqeYfLse~d~qikniedilqFientseg 353 (468)
T KOG4277|consen 317 HLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEG 353 (468)
T ss_pred eEEEEecCchheeeccCChhhhhHHHHHHHHhccccc
Confidence 9999988765555422 246889999999985443
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=1.3e-18 Score=134.88 Aligned_cols=101 Identities=32% Similarity=0.651 Sum_probs=94.0
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 358 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~ 358 (432)
|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.+|++.+.. .+++|.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 567999999999977689999999999999999999999999999997 79999999998876 79999999999999
Q ss_pred eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976 359 PAGNKSFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
++|.... .|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~---~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK---RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence 9998764 999999999999999986
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.77 E-value=2e-18 Score=133.10 Aligned_cols=97 Identities=25% Similarity=0.547 Sum_probs=87.5
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
.|..|+..+|++.+ ..+++++|+||++||++|+.+.|.|.++|+.+++ .+.|+.+||+.+.. .+++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 47789999999987 5568999999999999999999999999999987 69999999998877 6899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHH
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKF 382 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~f 382 (432)
|++|.... .|.|.++.+.|.+|
T Consensus 79 ~~~g~~~~---~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPE---KYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcc---cCCCCCCHHHHHhh
Confidence 99987543 89999999999887
No 14
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.77 E-value=3.4e-18 Score=132.86 Aligned_cols=103 Identities=61% Similarity=1.093 Sum_probs=92.6
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF 358 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~ 358 (432)
+|..|++.+|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++..++.++.+|++.++. ..+.+.++|++++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 37889999999988777799999999999999999999999999999875679999999999876 56788999999999
Q ss_pred eCCCcccCceeccCCCCHHHHHHHH
Q 013976 359 PAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 359 ~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
++|.+. .+..|.|..+.+.|.+||
T Consensus 81 ~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcC-CceEccCCcCHHHHHhhC
Confidence 999843 567899999999999986
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=2.7e-18 Score=133.28 Aligned_cols=100 Identities=28% Similarity=0.589 Sum_probs=89.0
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
.+..++..+|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+ .+.|+.+||+.+.. .+++|.++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 3677899999998877778999999999999999999999999999976 69999999999877 6899999999999
Q ss_pred EeCCCcccCceeccCCCC-HHHHHHHH
Q 013976 358 FPAGNKSFDPINVDVDRT-VVALYKFL 383 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~-~~~l~~fi 383 (432)
|++|.. .+..|.|..+ .+.|.+||
T Consensus 80 ~~~g~~--~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNAS--KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCC--CceEccCCCCCHHHHHhhC
Confidence 999833 3558999887 99999885
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.76 E-value=4.6e-18 Score=132.74 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCceEEEecccchhhhhcCCCcEEEEEeCCCChh--hh--hhHHHHHHHHHHh--cCCCCEEEEEEeCCCccc--ccCCC
Q 013976 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHL--RGVDSIVIAKMDGTTNEH--HRAKS 349 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~--c~--~~~~~~~~la~~~--~~~~~~~~~~id~~~~~~--~~~~i 349 (432)
...|..|+.+||++.+.+.+.++|++||++||++ |+ .+.|.+.++|..+ .+ ++.|+++|++.+.. .+++|
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCC
Confidence 3468889999999999888899999999999976 99 8889999999988 54 79999999999887 79999
Q ss_pred CCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 350 DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 350 ~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
.++||+++|++|+.+ .|.|.++.+.|.+||.+..
T Consensus 86 ~~iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVI----EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEE----EeeCCCCHHHHHHHHHHHh
Confidence 999999999999754 6999999999999999754
No 17
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.5e-17 Score=155.03 Aligned_cols=295 Identities=20% Similarity=0.322 Sum_probs=220.4
Q ss_pred HHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCCCceEEEeC---cHHHHhHcCCCCCCCCCeEEEEecCCCce
Q 013976 56 EAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLEDDVNFYQTT---NPDVAKIFHLDSKVNRPALVMVKKETEKI 128 (432)
Q Consensus 56 ~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~~~~F~~~~---~~~~~~~~~~~~~~~~p~i~l~~~~~~~~ 128 (432)
.....+......+|-|+.+.|++ ....|.+++ .+++.+.++.+. +.++|..+++.. +|++.+|++. ...
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~g---fPtl~~f~~~-~~~ 114 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQG---FPTLKVFRPG-KKP 114 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCcc---CcEEEEEcCC-Cce
Confidence 33445667888999999977765 566788777 667777777754 668999999986 7999999987 678
Q ss_pred ecccCCCCCHHHHHHHHHhcCCC-------c-eeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc-
Q 013976 129 SYFADGKFDKSTIADFVFSNKLP-------L-VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK- 197 (432)
Q Consensus 129 ~~y~~g~~~~~~l~~fi~~~~~p-------~-v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~- 197 (432)
..| .|..+.+.+..|+.....+ . +.+++..++.... .....+++.||++| .+|+.+.+.|.++|..+.
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~ 193 (383)
T KOG0191|consen 115 IDY-SGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS 193 (383)
T ss_pred eec-cCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc
Confidence 888 8999999999999876554 3 5556666665533 34456788899999 999999999999999996
Q ss_pred -CceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCcc-ccCCCCCC
Q 013976 198 -GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPF-FKSDPIPE 275 (432)
Q Consensus 198 -~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~-~~se~~p~ 275 (432)
+.+.++.+||+. ...+++.++++.+ |++.++..+....+.+.+.++.+.|..|+.+.......+. ..+-..+.
T Consensus 194 ~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 268 (383)
T KOG0191|consen 194 KENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKD 268 (383)
T ss_pred CcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCcc
Confidence 679999999985 5688999999999 9998887765424556788999999999999876542111 11111110
Q ss_pred CCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHH-hcCCCCEEEEEEeCCCccc--ccCCCCCC
Q 013976 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTNEH--HRAKSDGF 352 (432)
Q Consensus 276 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~~~--~~~~i~~~ 352 (432)
.... ..++.++|... ......+++.|+++||.+|..+.|.+...+.. +.....+.+.+++|..... ....++.+
T Consensus 269 ~~~~--~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 345 (383)
T KOG0191|consen 269 TFSP--TFLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGY 345 (383)
T ss_pred cccc--chhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcC
Confidence 0001 11111222221 23346789999999999999999999999998 2233479999999887766 57788999
Q ss_pred ceEEEEeCCCc
Q 013976 353 PTILFFPAGNK 363 (432)
Q Consensus 353 P~i~~~~~g~~ 363 (432)
|++.++..+..
T Consensus 346 ~~~~~~~~~~~ 356 (383)
T KOG0191|consen 346 PTIKLYNYGKN 356 (383)
T ss_pred ceeEeeccccc
Confidence 99999987764
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=7.6e-18 Score=131.58 Aligned_cols=101 Identities=25% Similarity=0.500 Sum_probs=88.6
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC----CCEEEEEEeCCCccc--ccCCCCCCc
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEH--HRAKSDGFP 353 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~----~~~~~~~id~~~~~~--~~~~i~~~P 353 (432)
.|..+++++|++.+ +.+++++|.|||+||.+|+.+.|.|.+++..+++. .++.++.+||+.+.. .+++|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47789999999976 66789999999999999999999999999988542 259999999999877 689999999
Q ss_pred eEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976 354 TILFFPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
++++|++|... ...|.|.++.+.|.+||
T Consensus 81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM--KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence 99999999742 35899999999999986
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.72 E-value=3.2e-17 Score=128.45 Aligned_cols=102 Identities=33% Similarity=0.642 Sum_probs=89.2
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 356 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~~~--~~~~i~~~P~i~ 356 (432)
|..|+..+|++.+.+.+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||+. +.. .+++|.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678999999999888788999999999999999999999999999986 69999999998 433 589999999999
Q ss_pred EEeCCCcc--cCceeccCCCCHHHHHHHHH
Q 013976 357 FFPAGNKS--FDPINVDVDRTVVALYKFLK 384 (432)
Q Consensus 357 ~~~~g~~~--~~~~~y~g~~~~~~l~~fi~ 384 (432)
+|++|..+ ..+..|.|.++.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99988621 13568999999999999983
No 20
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.9e-17 Score=144.64 Aligned_cols=106 Identities=28% Similarity=0.512 Sum_probs=99.4
Q ss_pred CceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976 279 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 354 (432)
Q Consensus 279 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~ 354 (432)
..|..+|..||.+.+...+ +||||+||+|||++|+++.|.+++++..+++ .+++++|||+.... ..|+|+++|+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 3499999999999887654 6999999999999999999999999999999 79999999999988 6899999999
Q ss_pred EEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976 355 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 355 i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
+++|.+|+.++ .|.|....+.|.+||.+++..
T Consensus 101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence 99999999987 899999999999999999987
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.71 E-value=6.6e-17 Score=124.69 Aligned_cols=98 Identities=26% Similarity=0.451 Sum_probs=85.3
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
.|..|+.++|++.+ . ..++|.|||+||++|+.+.|.|.+++..++. .++.++.+|++.+.. .+++|.++|++++
T Consensus 2 ~v~~l~~~~f~~~~-~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E--GEWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C--CCEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47889999999866 3 2389999999999999999999999998764 269999999998776 6899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
|++|.. ..|.|.++.+.|.+||++
T Consensus 78 ~~~g~~----~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF----RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE----EEecCCCCHHHHHHHHhC
Confidence 998863 289999999999999874
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.71 E-value=7.4e-17 Score=125.03 Aligned_cols=99 Identities=35% Similarity=0.670 Sum_probs=89.8
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 358 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~ 358 (432)
|..+++.+|++.+.+.+.+++|+||++||++|+.+.|.|.+++..+.+ .+.|+.+|++.+.. .+++|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 677889999998877777899999999999999999999999999986 69999999998877 68999999999999
Q ss_pred eCCCcccCceeccCCCCHHHHHHHH
Q 013976 359 PAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 359 ~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
++|.. .+..|.|..+.++|.+|+
T Consensus 80 ~~~~~--~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN--SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc--ceeecCCCCCHHHHHHHh
Confidence 98844 567899999999999997
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.71 E-value=1.1e-16 Score=125.27 Aligned_cols=105 Identities=25% Similarity=0.504 Sum_probs=94.2
Q ss_pred CceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 356 (432)
Q Consensus 279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~ 356 (432)
..|..+++.+|.+.+.+.+++++|.||++||++|+.+.|.|++++..+.+ ++.|+.+|++.+.. .++++.++|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45788999999998877789999999999999999999999999999987 69999999998877 689999999999
Q ss_pred EEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 357 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
+|++|..+. .+.|..+.+.|..||..++.
T Consensus 81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 81 LFKNGEVAA---TKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred EEeCCeEEE---EecCCCCHHHHHHHHHHhcC
Confidence 999987654 78898899999999998763
No 24
>PTZ00102 disulphide isomerase; Provisional
Probab=99.70 E-value=3.2e-15 Score=148.64 Aligned_cols=224 Identities=13% Similarity=0.191 Sum_probs=171.4
Q ss_pred cCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHHhhcCCeEEEEEecCCC-c-chHHHHHHHh-ccCCCceEEEeCcHH
Q 013976 26 IMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLV-G-SESEVLADAS-RLEDDVNFYQTTNPD 102 (432)
Q Consensus 26 ~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~-~-~~~~~f~~~a-~~~~~~~F~~~~~~~ 102 (432)
.|.++.+.++|..||.....|.+..++. +.+..++.+...+ +.|+...+ . .....|.++| ++++.+.|+.+...+
T Consensus 212 ~~~~~~~~~~l~~fI~~~~~P~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~ 289 (477)
T PTZ00102 212 ELFMGKTKEELEEFVSTESFPLFAEINA-ENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ 289 (477)
T ss_pred ccCCCCCHHHHHHHHHHcCCCceeecCc-cchHHHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh
Confidence 3555679999999999999999988864 6666777665543 33443222 1 2445677888 788899999876554
Q ss_pred ----HHhHcCCCCCCCCCeEEEEecCCCceecccCCC----CCHHHHHHHHHhcCC-----------------CceeecC
Q 013976 103 ----VAKIFHLDSKVNRPALVMVKKETEKISYFADGK----FDKSTIADFVFSNKL-----------------PLVTIFT 157 (432)
Q Consensus 103 ----~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~----~~~~~l~~fi~~~~~-----------------p~v~~l~ 157 (432)
+++.+|+.. .|++++....+ .+.+ .+. .+.+.|..|+..... ..+..++
T Consensus 290 ~~~~~~~~~gi~~---~P~~~i~~~~~--~y~~-~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~ 363 (477)
T PTZ00102 290 FGSHAKEHLLIEE---FPGLAYQSPAG--RYLL-PPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVV 363 (477)
T ss_pred cchhHHHhcCccc---CceEEEEcCCc--ccCC-CccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEec
Confidence 567899875 79888776422 3334 332 688999999985321 2367788
Q ss_pred CCchhhh-ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEE
Q 013976 158 RENAPSV-FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYT 233 (432)
Q Consensus 158 ~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~ 233 (432)
.+++... ...++++++.||++| ++|+.+.+.|.++|..+++ .+.|+.+|++. +...++.++++++ |+++++
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~---~~~~~~~~~v~~~--Pt~~~~ 438 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA---NETPLEEFSWSAF--PTILFV 438 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC---CccchhcCCCccc--CeEEEE
Confidence 8889876 567778899999999 9999999999999999875 59999999987 4467899999988 999999
Q ss_pred eCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 234 GNDDAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 234 ~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
..++.....+.|..+.+.|.+|++++...
T Consensus 439 ~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 439 KAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred ECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 87765556789999999999999997753
No 25
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=2.4e-14 Score=141.94 Aligned_cols=310 Identities=15% Similarity=0.181 Sum_probs=216.2
Q ss_pred ceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccC---CCceEEEe---CcHHHHhHcCCCCCCCCCe
Q 013976 48 IYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLE---DDVNFYQT---TNPDVAKIFHLDSKVNRPA 117 (432)
Q Consensus 48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~---~~~~F~~~---~~~~~~~~~~~~~~~~~p~ 117 (432)
+..+ +.+.++.+++.++.++|.|+.+.|.+ ....|.++| .+. ..+.|+.+ .+.++|+++++.. +|+
T Consensus 3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~---~Pt 78 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG---YPT 78 (462)
T ss_pred ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc---ccE
Confidence 4455 56889999998999999999988864 345677766 332 34788874 3567999999986 799
Q ss_pred EEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecC-CCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhc
Q 013976 118 LVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSF 196 (432)
Q Consensus 118 i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~ 196 (432)
+++|+.+......| .|..+.+.|..||.....|.+.+++ .+.+..+.... ...+++|.... -......+.++|..+
T Consensus 79 ~~~~~~g~~~~~~~-~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~vi~~~~~~-~~~~~~~~~~~a~~~ 155 (462)
T TIGR01130 79 LKIFRNGEDSVSDY-NGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADD-DVVVIGFFKDL-DSELNDTFLSVAEKL 155 (462)
T ss_pred EEEEeCCccceeEe-cCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC-CcEEEEEECCC-CcHHHHHHHHHHHHh
Confidence 99998644225778 8999999999999999998888886 56666666664 44444444431 135667899999999
Q ss_pred cCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-C-ceecCCCCC--CHHHHHHHHHHHhcCCcCccccCCC
Q 013976 197 KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-A-KKHILDGEL--TLDKIKTFGEDFLEGKLKPFFKSDP 272 (432)
Q Consensus 197 ~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~-~~y~~~~~~--~~~~i~~fi~~~~~g~l~~~~~se~ 272 (432)
.+...+.....+ ..+...++... +.++++.... . ..+.+.|.. +.+.|.+|+....-
T Consensus 156 ~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~----------- 216 (462)
T TIGR01130 156 RDVYFFFAHSSD-----VAAFAKLGAFP---DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESL----------- 216 (462)
T ss_pred hhccceEEecCC-----HHHHhhcCCCC---CcEEEecccccccccccccCcccCCHHHHHHHHHHcCC-----------
Confidence 986553322211 24456666643 3343443322 2 213455554 66899999998542
Q ss_pred CCCCCCCceEEEecccchhhhhcCCCcEEEEEe--CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCC
Q 013976 273 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY--APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAK 348 (432)
Q Consensus 273 ~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~--~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~ 348 (432)
+.+..++..++...... + +.+++|+ ......|..+...|.++|+.+++ ..+.|+.+|+..... ..++
T Consensus 217 ------p~v~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~ 287 (462)
T TIGR01130 217 ------PLVGEFTQETAAKYFES-G-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFG 287 (462)
T ss_pred ------CceEeeCCcchhhHhCC-C-CceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcC
Confidence 24777888888887633 3 5444443 34556689999999999999985 369999999887655 4566
Q ss_pred CC--CCceEEEEeCCCcccCceeccC-CCCHHHHHHHHHhcCCCCCccc
Q 013976 349 SD--GFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNASIPFKIQ 394 (432)
Q Consensus 349 i~--~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~~~~~~~~ 394 (432)
+. .+|+++++..... +...+.+ ..+.+.|.+||++..+...+..
T Consensus 288 ~~~~~~P~~vi~~~~~~--~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~ 334 (462)
T TIGR01130 288 LKAEKFPAVAIQDLEGN--KKYPMDQEEFSSENLEAFVKDFLDGKLKPY 334 (462)
T ss_pred CCccCCceEEEEeCCcc--cccCCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence 66 7999999965431 1124554 7899999999999988776644
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.69 E-value=1.4e-16 Score=124.40 Aligned_cols=101 Identities=32% Similarity=0.676 Sum_probs=86.4
Q ss_pred ceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-cc--c-cCCCCCCc
Q 013976 280 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EH--H-RAKSDGFP 353 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-~~--~-~~~i~~~P 353 (432)
.|..++..+|+..+. +.+++++|.||++||++|+.+.|.|.+++..+++ .++.++.+|++.+ .. . .+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 377889999999874 3468999999999999999999999999999985 2699999999974 33 2 58999999
Q ss_pred eEEEEeCCCcccCceeccC-CCCHHHHHHHH
Q 013976 354 TILFFPAGNKSFDPINVDV-DRTVVALYKFL 383 (432)
Q Consensus 354 ~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi 383 (432)
++++|++|.. .+..|.| .++.++|..||
T Consensus 81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence 9999988765 5678999 48999999986
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.69 E-value=7.6e-17 Score=126.15 Aligned_cols=99 Identities=19% Similarity=0.395 Sum_probs=85.3
Q ss_pred EEecccchhhhhc--CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976 283 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 358 (432)
Q Consensus 283 ~l~~~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~ 358 (432)
.++.++|++.+.. .+++++|.||++||++|+.+.|.|.++++.+++. ++.++++|++.+.. .+++|.++|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 4567788776643 5689999999999999999999999999999763 69999999998766 68999999999999
Q ss_pred eCCCcccCceeccCCCCHHHHHHHHHh
Q 013976 359 PAGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 359 ~~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
++|+.+. .+.|..+.+.|.+||.+
T Consensus 87 ~~g~~~~---~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTF---YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEE---EecCCCCHHHHHHHHhc
Confidence 9886543 67888999999999986
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.69 E-value=1.4e-16 Score=123.19 Aligned_cols=98 Identities=33% Similarity=0.666 Sum_probs=86.0
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC-CCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~-~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
+..|++++|+..+.+ +.++|.||++||++|+.+.|.|.+++..+++ .+.+.++.+||+.+.. .+++|.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567899999998843 3599999999999999999999999999976 3479999999998876 6899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHH
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
|++|... ..|.|..+.+.|.+||
T Consensus 80 ~~~g~~~---~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKV---DKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCee---eEeeCCCCHHHHHhhC
Confidence 9988754 3899999999999885
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=138.31 Aligned_cols=109 Identities=27% Similarity=0.567 Sum_probs=94.3
Q ss_pred CCceEEEecccchhhhhcC----CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCC
Q 013976 278 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG 351 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~~~----~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~ 351 (432)
...|..++..+|++.+... +++++|.||++||++|+.+.|.|+++++.+++ .+.|+.+|++.+.. .+++|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3568999999999987543 47999999999999999999999999999987 69999999998876 6899999
Q ss_pred CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976 352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391 (432)
Q Consensus 352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 391 (432)
+|++++|++|.... .+.|.++.+.|.+|+.++.....
T Consensus 107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999886542 34567999999999999986444
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.68 E-value=2e-16 Score=120.81 Aligned_cols=93 Identities=20% Similarity=0.414 Sum_probs=82.6
Q ss_pred ccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
++|++.+.+. +++++|.||++||++|+.+.|.|.+++..+.+ .+.++.+|++.+.. .+++|.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3678877655 68999999999999999999999999999987 69999999999877 6899999999999998876
Q ss_pred ccCceeccCCCCHHHHHHHHH
Q 013976 364 SFDPINVDVDRTVVALYKFLK 384 (432)
Q Consensus 364 ~~~~~~y~g~~~~~~l~~fi~ 384 (432)
+. .+.|..+.+.|..||+
T Consensus 79 ~~---~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VD---GFQGAQPEEQLRQMLD 96 (96)
T ss_pred ee---eecCCCCHHHHHHHhC
Confidence 54 7999999999999874
No 31
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.67 E-value=6.1e-16 Score=120.28 Aligned_cols=101 Identities=44% Similarity=0.864 Sum_probs=88.9
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-ccc--ccCCCCCCceEEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFPTILF 357 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-~~~--~~~~i~~~P~i~~ 357 (432)
|..+++.+|++.+.+.+++++|.||++||.+|+.+.|.|.+++..++...++.++.+|++. +.. .+++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999987666679999999999999999999999999999854579999999999 665 6899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHH
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
|.+|.. ....|.|..+.+.|.+||
T Consensus 82 ~~~~~~--~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST--EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC--CccccCCccCHHHHHhhC
Confidence 988854 456899999999999985
No 32
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.67 E-value=3.2e-16 Score=120.66 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=79.7
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeC--CCCh---hhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-----Cccc--ccCC
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----TNEH--HRAK 348 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~---~c~~~~~~~~~la~~~~~~~~~~~~~id~~-----~~~~--~~~~ 348 (432)
+..|+..||++.+ .....+||.||| |||+ +|+.+.|.+.+.+ ..+.++.+||+ ++.. .+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa------~~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT------DDLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc------CceEEEEEecccccchhhHHHHHHhC
Confidence 6779999999977 667889999999 9999 6666555554443 24999999994 3333 7899
Q ss_pred CC--CCceEEEEeCCCcccCceeccCC-CCHHHHHHHHHhc
Q 013976 349 SD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 386 (432)
Q Consensus 349 i~--~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~ 386 (432)
|+ +||||.+|++|... .|+.|.|. ++.+.|.+||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence 99 99999999999643 56799996 9999999999987
No 33
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.66 E-value=1.7e-16 Score=121.83 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=69.0
Q ss_pred ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
++|++.+.. .+++++|.|||+||++|+.|.|.+.+++..+.+ .+.|+++|++++.. .+++|.++||+++|++|+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 567777754 568999999999999999999999999999987 58999999999988 6899999999999999988
Q ss_pred cc
Q 013976 364 SF 365 (432)
Q Consensus 364 ~~ 365 (432)
+.
T Consensus 81 v~ 82 (114)
T cd02954 81 MK 82 (114)
T ss_pred EE
Confidence 74
No 34
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.65 E-value=3.7e-16 Score=119.54 Aligned_cols=90 Identities=24% Similarity=0.432 Sum_probs=76.1
Q ss_pred ccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCCCCCCceEEEEeCCC
Q 013976 287 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 287 ~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~i~~~P~i~~~~~g~ 362 (432)
+++.+.+. ..+++++|.|||+||++|+.+.|.|+++++.+++ +.++.+|++ .+.. .+++|.++||+++|++|
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g- 82 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST- 82 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-
Confidence 34555554 3568899999999999999999999999999965 788999988 4554 68999999999999988
Q ss_pred cccCceeccCCCCHHHHHHHH
Q 013976 363 KSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 363 ~~~~~~~y~g~~~~~~l~~fi 383 (432)
... .|.|.++.+.|.+||
T Consensus 83 ~~~---~~~G~~~~~~l~~f~ 100 (100)
T cd02999 83 PRV---RYNGTRTLDSLAAFY 100 (100)
T ss_pred cee---EecCCCCHHHHHhhC
Confidence 433 899999999999985
No 35
>PHA02278 thioredoxin-like protein
Probab=99.65 E-value=3.8e-16 Score=119.22 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=76.8
Q ss_pred ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----c--ccCCCCCCceEEEEeC
Q 013976 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAKSDGFPTILFFPA 360 (432)
Q Consensus 287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----~--~~~~i~~~P~i~~~~~ 360 (432)
++|.+.+ ..+++++|.|||+||++|+.+.|.+++++..+.. .+.|+.+|++.+. . .+++|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677766 5678999999999999999999999999988654 4778999999763 2 6899999999999999
Q ss_pred CCcccCceeccCCCCHHHHHHH
Q 013976 361 GNKSFDPINVDVDRTVVALYKF 382 (432)
Q Consensus 361 g~~~~~~~~y~g~~~~~~l~~f 382 (432)
|+.+. +..|..+.+.|.++
T Consensus 82 G~~v~---~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVK---KYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEE---EEeCCCCHHHHHhh
Confidence 98875 78888888888765
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=7.9e-16 Score=118.97 Aligned_cols=100 Identities=48% Similarity=0.953 Sum_probs=88.7
Q ss_pred EecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 013976 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 361 (432)
Q Consensus 284 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g 361 (432)
|++.+|++.+. .+++++|.||++||.+|+.+.+.|.+++..+++..++.++.+|++.+.. .+++|.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45688998874 7889999999999999999999999999999875569999999998877 68999999999999988
Q ss_pred CcccCceeccCCCCHHHHHHHHHhcC
Q 013976 362 NKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 362 ~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
.. +..|.|..+.+.|..||.+++
T Consensus 80 ~~---~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK---PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc---ceeecCCCCHHHHHHHHHhcC
Confidence 64 448999999999999999864
No 37
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-13 Score=128.99 Aligned_cols=324 Identities=14% Similarity=0.141 Sum_probs=229.4
Q ss_pred HHHHHHHHhh----CCCceeeCCHHHHHHHhhcCCeEEEEEecCCCcc---hHHHHHHHh-ccCC---CceEEE---eCc
Q 013976 35 AIVTWIKKKI----GPGIYNITTLDEAERVLTSETKVVLGYLNSLVGS---ESEVLADAS-RLED---DVNFYQ---TTN 100 (432)
Q Consensus 35 ~i~~~l~~~~----~~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~---~~~~f~~~a-~~~~---~~~F~~---~~~ 100 (432)
.++.|+.... ...+.++ +.+.++.++..+..++|-||..+|+. +...|.++| .+.. .+..+. +.+
T Consensus 10 ~~~~~~~~a~~~~~~~~Vl~L-t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~ 88 (493)
T KOG0190|consen 10 LPVASSEAASVPKAEEDVLVL-TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE 88 (493)
T ss_pred cchhhhhhhhcCCcccceEEE-ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh
Confidence 3444554443 3346666 46999999999999999999999975 677899988 4443 456665 346
Q ss_pred HHHHhHcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCc-hhhhccCCCcceEE-EEEe
Q 013976 101 PDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTREN-APSVFESPIKNQLL-LFAV 178 (432)
Q Consensus 101 ~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~-~~~~~~~~~~~~i~-~~~~ 178 (432)
.++|.+|++.. +|++.+||++.. ...| .|..+.+.|..|++..+-|.+..+.... ...+... ..+.++ +|.+
T Consensus 89 ~~~~~~y~v~g---yPTlkiFrnG~~-~~~Y-~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~-~~~~vig~F~d 162 (493)
T KOG0190|consen 89 SDLASKYEVRG---YPTLKIFRNGRS-AQDY-NGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSK-KDVVVIGFFKD 162 (493)
T ss_pred hhhHhhhcCCC---CCeEEEEecCCc-ceec-cCcccHHHHHHHHHhccCCCceecccHHHHHhhccC-CceEEEEEecc
Confidence 78999999986 899999998543 6889 9999999999999999999999988644 4445554 455544 4433
Q ss_pred CcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976 179 SNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
..... ..+-..|..+.+.+.|+.-. ...+...+++.....|.++++.......+.|+|.++.+.|.+||..
T Consensus 163 ~~~~~---~~~~~~a~~l~~d~~F~~ts------~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~ 233 (493)
T KOG0190|consen 163 LESLA---ESFFDAASKLRDDYKFAHTS------DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQE 233 (493)
T ss_pred cccch---HHHHHHHHhccccceeeccC------cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHH
Confidence 32222 45666778888889998322 2366788887643245566665555455566899999999999998
Q ss_pred HhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe
Q 013976 259 FLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338 (432)
Q Consensus 259 ~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id 338 (432)
... +.|..++..++.......-..-+.+|-..-|..-...++.+.++|+.|++ .+.|+.+|
T Consensus 234 ~~~-----------------plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d 294 (493)
T KOG0190|consen 234 NSL-----------------PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILID 294 (493)
T ss_pred hcc-----------------cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEC
Confidence 653 23566666666664423225566666667788888899999999999998 79999997
Q ss_pred CCCccc--ccCCCC--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976 339 GTTNEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ 394 (432)
Q Consensus 339 ~~~~~~--~~~~i~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~ 394 (432)
...... ..+++. ..|..++..++... ++..=.+..+.++|..|+++.+.......
T Consensus 295 ~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~-Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~ 353 (493)
T KOG0190|consen 295 PESFARVLEFFGLEEEQLPIRAVILNEDGS-KYPLEEEELDQENIESFVKDFLDGKVKPH 353 (493)
T ss_pred hHHhhHHHHhcCcccccCCeeEEeeccccc-cccCccccccHHHHHHHHHHHhcCccccc
Confidence 666655 456666 55634444444332 33333345888899999999998777554
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.63 E-value=1.9e-15 Score=117.30 Aligned_cols=99 Identities=30% Similarity=0.631 Sum_probs=85.7
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 356 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~--~~~--~~~~i~~~P~i~ 356 (432)
+..++..+|++.+ ..+++++|.||++||.+|+.+.|.+.+++..+.....+.++.+|++. +.. .+++|.++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678889999876 55669999999999999999999999999999854479999999998 444 588999999999
Q ss_pred EEeCCCcccCceeccCCCCHHHHHHHH
Q 013976 357 FFPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 357 ~~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
+|++|+... .|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~---~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE---KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence 999987543 899999999999885
No 39
>PRK10996 thioredoxin 2; Provisional
Probab=99.62 E-value=2.3e-15 Score=122.54 Aligned_cols=104 Identities=23% Similarity=0.557 Sum_probs=91.9
Q ss_pred CCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976 278 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 355 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i 355 (432)
++.+..++..+|++.+ +.++.++|.||++||++|+.+.+.|.+++..+.+ ++.|+.+|++.+.. .+++|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4556778889999866 5679999999999999999999999999999887 69999999998777 68999999999
Q ss_pred EEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 356 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 356 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
++|++|+.+. .+.|..+.+.|.+||++++
T Consensus 111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence 9999988764 7889999999999999763
No 40
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.61 E-value=4.7e-15 Score=116.38 Aligned_cols=102 Identities=32% Similarity=0.623 Sum_probs=83.8
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc----ccCCCCCCce
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSDGFPT 354 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~----~~~~i~~~P~ 354 (432)
.+..++..+|++.+.+..++++|.||++||++|+.+.|.|++++..+++. +.+.|+.+||+.... .++++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47889999999998777789999999999999999999999999999753 359999999875332 5799999999
Q ss_pred EEEEeCCCcccCc--eeccCC-CCHHHHHHH
Q 013976 355 ILFFPAGNKSFDP--INVDVD-RTVVALYKF 382 (432)
Q Consensus 355 i~~~~~g~~~~~~--~~y~g~-~~~~~l~~f 382 (432)
+++|++|... .+ ..|+|. +..+++...
T Consensus 82 ~~lf~~~~~~-~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 82 LRYFPPFSKE-ATDGLKQEGPERDVNELREA 111 (114)
T ss_pred EEEECCCCcc-CCCCCcccCCccCHHHHHHH
Confidence 9999988754 23 567774 666666543
No 41
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=3e-15 Score=115.43 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=77.7
Q ss_pred cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEe
Q 013976 286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFP 359 (432)
Q Consensus 286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~ 359 (432)
.++|++.+.+. +++++|.|||+||++|+.+.|.|.+++..+ . .+.|+.+|++++.. .+++|.++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 35677777544 789999999999999999999999999999 3 59999999998742 579999999999999
Q ss_pred CCCcccCceeccCCCCHHHHHHHHHhc
Q 013976 360 AGNKSFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 360 ~g~~~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
+|+.+. .+.| ...+.|..-+..+
T Consensus 80 ~G~~v~---~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIH---EEEG-IGPDELIGDVLYY 102 (103)
T ss_pred CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence 998764 7777 5667777766543
No 42
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.60 E-value=5.6e-15 Score=112.55 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=83.7
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 356 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~ 356 (432)
...++..||++.+ +.++.++|+||++| |++|..+.|.|.++++.+.+ .+.|+.+|++++.. .+++|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5678999999876 77799999999997 99999999999999999987 69999999999887 689999999999
Q ss_pred EEeCCCcccCceeccCCCCHHHHH
Q 013976 357 FFPAGNKSFDPINVDVDRTVVALY 380 (432)
Q Consensus 357 ~~~~g~~~~~~~~y~g~~~~~~l~ 380 (432)
+|++|+.+. .+.|..+.+.+.
T Consensus 89 ~fkdGk~v~---~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVG---VLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEE---EEeCccCHHHHh
Confidence 999998875 778877776654
No 43
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.60 E-value=3.9e-15 Score=114.66 Aligned_cols=95 Identities=20% Similarity=0.425 Sum_probs=80.2
Q ss_pred ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCc
Q 013976 285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~ 363 (432)
+.++|++.+ ..+++++|.|||+||++|+.+.|.+.+++..+++. .+.|+.+|++..+. .+++|.++|++++|++|+.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEE
Confidence 567888865 56789999999999999999999999999999752 58999999984433 6899999999999999987
Q ss_pred ccCceeccCCCCHHHHHHHHHh
Q 013976 364 SFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 364 ~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
+. +..| .+...|.++|.+
T Consensus 84 ~~---~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 84 VA---VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EE---EEec-CChHHHHHHHhh
Confidence 64 5555 588999999875
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.60 E-value=4.9e-15 Score=141.56 Aligned_cols=106 Identities=30% Similarity=0.603 Sum_probs=92.0
Q ss_pred CCceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCC
Q 013976 278 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDG 351 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~ 351 (432)
+..|..|+..+|++.+. +.++++||.||+|||++|+.+.|.|+++|..+++. .+.|+.+|++.+.. ..++|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45689999999999874 45689999999999999999999999999999863 58999999987643 4799999
Q ss_pred CceEEEEeCCCcccCceecc-CCCCHHHHHHHHHhc
Q 013976 352 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKN 386 (432)
Q Consensus 352 ~P~i~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~ 386 (432)
+||+++|++|.. +++.|. |.++.+.|..||+..
T Consensus 429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHhh
Confidence 999999999965 677898 489999999999853
No 45
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=4.9e-15 Score=141.58 Aligned_cols=106 Identities=29% Similarity=0.610 Sum_probs=92.4
Q ss_pred CCceEEEecccchhhhh--cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc---ccCCCCC
Q 013976 278 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH---HRAKSDG 351 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~---~~~~i~~ 351 (432)
++.|..|+..+|++.+. +.++.+||.||+|||++|+.+.|.|.+++..+.+. ++.|+.+|++ .+.. ..++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 45789999999999873 56789999999999999999999999999999763 6999999999 4333 2589999
Q ss_pred CceEEEEeCCCcccCceeccC-CCCHHHHHHHHHhc
Q 013976 352 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN 386 (432)
Q Consensus 352 ~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~ 386 (432)
+||+++|++|.. +++.|.| .++.++|++||+..
T Consensus 423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence 999999999876 6889985 79999999999864
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.59 E-value=6e-15 Score=115.89 Aligned_cols=99 Identities=24% Similarity=0.348 Sum_probs=81.8
Q ss_pred CceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceE
Q 013976 279 GDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI 355 (432)
Q Consensus 279 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i 355 (432)
+.+..++.++|.+.+.+.+ ++++|.||+|||++|+.+.|.|++++..+.+ +.|+++|++++.. .+++|.++|++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhhHHHHhcCCCcCCEE
Confidence 5678899999999886653 8999999999999999999999999999864 8999999998733 68999999999
Q ss_pred EEEeCCCcccCceeccC-------CCCHHHHHHHH
Q 013976 356 LFFPAGNKSFDPINVDV-------DRTVVALYKFL 383 (432)
Q Consensus 356 ~~~~~g~~~~~~~~y~g-------~~~~~~l~~fi 383 (432)
++|++|+.+. ++.| ..+.+.|..|+
T Consensus 81 ~~f~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELID---NIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEE---EEecHHHhCCCCCCHHHHHHHh
Confidence 9999998765 4444 34455555554
No 47
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.59 E-value=6.3e-15 Score=120.38 Aligned_cols=94 Identities=18% Similarity=0.409 Sum_probs=79.2
Q ss_pred CCCCCCCCCCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc
Q 013976 270 SDPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR 346 (432)
Q Consensus 270 se~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~ 346 (432)
+++.+.. ...+..++.++|++.+... +++++|.||++||++|+.+.|.|+++++.+.+. ++.|+.+|++++.. .+
T Consensus 20 ~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 20 PQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred CCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHH
Confidence 4444433 4678889999999987543 578999999999999999999999999999752 69999999999877 57
Q ss_pred CCCCC------CceEEEEeCCCccc
Q 013976 347 AKSDG------FPTILFFPAGNKSF 365 (432)
Q Consensus 347 ~~i~~------~P~i~~~~~g~~~~ 365 (432)
++|.+ +||+++|++|+.+.
T Consensus 98 ~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 98 FRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred cCceecCCcCCCCEEEEEECCEEEE
Confidence 88887 99999999998775
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.58 E-value=9.5e-15 Score=112.64 Aligned_cols=98 Identities=30% Similarity=0.562 Sum_probs=85.7
Q ss_pred ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976 285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~ 362 (432)
+.++|.+.+.+.+++++|.||++||++|+.+.+.+.+++..+.+ ++.|+.+|++.+.. .++++.++|++++|++|.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45678887766667999999999999999999999999998876 69999999998876 689999999999999887
Q ss_pred cccCceeccCCCCHHHHHHHHHhcC
Q 013976 363 KSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 363 ~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
... .+.|..+.+.|.+||++++
T Consensus 80 ~~~---~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD---RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee---eecCCCCHHHHHHHHHhhC
Confidence 653 6778889999999998763
No 49
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.57 E-value=4.6e-14 Score=115.17 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=82.2
Q ss_pred ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEE-eCC
Q 013976 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFF-PAG 361 (432)
Q Consensus 287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~-~~g 361 (432)
..|++.+ ..+++++|.||++||.+|+.+.|.|.+++..+.+ .+.|+.+|++.+.. ..++|.++|++++| ++|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566644 6678999999999999999999999999999976 57888888776532 68999999999999 467
Q ss_pred CcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976 362 NKSFDPINVDVDRTVVALYKFLKKNASIP 390 (432)
Q Consensus 362 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 390 (432)
+.+. .+.|....+.|.++|.+.+...
T Consensus 88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence 7654 7889889999999999988755
No 50
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.57 E-value=2e-14 Score=111.26 Aligned_cols=94 Identities=27% Similarity=0.599 Sum_probs=80.0
Q ss_pred ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
++|++. ..++.++|.||++||++|+.+.|.|.+++..+++. ..+.++.+|++.+.. .+++|.++|++++|.+|..
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 667763 34679999999999999999999999999999652 359999999988766 6899999999999976533
Q ss_pred ccCceeccCCCCHHHHHHHHHhc
Q 013976 364 SFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 364 ~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
..|.|..+.+.|.+|+++.
T Consensus 85 ----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 ----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----eeecCCCCHHHHHHHHHhh
Confidence 3789999999999999875
No 51
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=109.61 Aligned_cols=85 Identities=29% Similarity=0.544 Sum_probs=72.2
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 372 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g 372 (432)
..++.++|.|||+||++|+.+.|.+.+||.+|.+ +.|.++|++++.. ..++|...||+++|++|+.+. .+.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 3358999999999999999999999999999987 9999999998333 689999999999999998875 6666
Q ss_pred CCCHHHHHHHHHhc
Q 013976 373 DRTVVALYKFLKKN 386 (432)
Q Consensus 373 ~~~~~~l~~fi~~~ 386 (432)
.+...+.+.|.++
T Consensus 93 -a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 -ANKAELEKKIAKH 105 (106)
T ss_pred -CCHHHHHHHHHhc
Confidence 4555777777654
No 52
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.55 E-value=2.8e-14 Score=111.62 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=81.5
Q ss_pred CceEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceE
Q 013976 279 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 355 (432)
Q Consensus 279 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i 355 (432)
|.+..++. .+|.+.+ ..++.++|.||++||++|+.+.|.|.++++.+.+ +.|+++|++++.. .+++|.++|++
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 45777777 8888877 4568999999999999999999999999998854 8999999999876 78999999999
Q ss_pred EEEeCCCcccCcee---cc--CCCCHHHHHHHH
Q 013976 356 LFFPAGNKSFDPIN---VD--VDRTVVALYKFL 383 (432)
Q Consensus 356 ~~~~~g~~~~~~~~---y~--g~~~~~~l~~fi 383 (432)
++|++|+.+.+... .. +..+.+++..||
T Consensus 80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999987641111 11 245667776665
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.54 E-value=2.8e-14 Score=109.86 Aligned_cols=98 Identities=49% Similarity=0.933 Sum_probs=83.1
Q ss_pred EEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeC
Q 013976 283 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA 360 (432)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~ 360 (432)
.++.++|.+.+.+ +++++|+||++||++|+.+.+.|.+++..++....+.|+.+|++.+.. ..++|.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 3667788887744 449999999999999999999999999999633479999999998655 7899999999999988
Q ss_pred CCcccCceeccCCCCHHHHHHHH
Q 013976 361 GNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 361 g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
|.. ...+|.|..+.+.|.+|+
T Consensus 81 ~~~--~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK--EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc--ccccCCCCcCHHHHHhhC
Confidence 742 455899999999999885
No 54
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=6.4e-14 Score=118.09 Aligned_cols=130 Identities=19% Similarity=0.297 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCcCccccCCCCCCCCCCceEEEec-ccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 013976 253 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 329 (432)
Q Consensus 253 ~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~ 329 (432)
..|++.|...++....+..+ -...-+.+..++. .+|.+.+...+ .+++|.||++||++|+.+.|.|.+||..+.
T Consensus 37 e~~l~~~R~~R~~el~~~~~-~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-- 113 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKLP-FGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-- 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--
Confidence 45777776655543322110 1122577889998 99999886544 489999999999999999999999999985
Q ss_pred CCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhc
Q 013976 330 DSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 386 (432)
Q Consensus 330 ~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 386 (432)
.+.|++||++.+.. ..+.|.++||+++|++|+.+.+.+.+. | ..+.+.|..||.++
T Consensus 114 -~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 114 -AVKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred -CeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 49999999998744 789999999999999998764232222 2 67888888888765
No 55
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.51 E-value=8e-14 Score=111.37 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=81.7
Q ss_pred cccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEE-EEeCC
Q 013976 286 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL-FFPAG 361 (432)
Q Consensus 286 ~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~-~~~~g 361 (432)
..+|++.+. ..++++||.|||+||++|+.+.|.+.++|..+++ .+.|+.+|++++.. ..++|.+.|++. +|++|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 477888775 3468999999999999999999999999999987 58999999999988 789999776666 88999
Q ss_pred C-cccCceeccC--------CCCHHHHHHHHHhcCC
Q 013976 362 N-KSFDPINVDV--------DRTVVALYKFLKKNAS 388 (432)
Q Consensus 362 ~-~~~~~~~y~g--------~~~~~~l~~fi~~~~~ 388 (432)
. .++ ...| ..+.+.|.+-++....
T Consensus 89 ~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 89 HIMID---LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred eEEEE---EecccccccccccCCHHHHHHHHHHHHH
Confidence 8 554 5566 4688888888887753
No 56
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.50 E-value=2.2e-14 Score=124.19 Aligned_cols=94 Identities=26% Similarity=0.555 Sum_probs=83.7
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 372 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g 372 (432)
+...|+|.||||||+||+++.|+|.+++..+++. ..++++++||+..+. .+++|++||||.+|+++..+ .|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecCC
Confidence 3467999999999999999999999999999874 479999999999888 68999999999999988655 8999
Q ss_pred CCCHHHHHHHHHhcCCCCCcc
Q 013976 373 DRTVVALYKFLKKNASIPFKI 393 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~~~~~~ 393 (432)
.+..+.|++|...-++.-+..
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~p 138 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEP 138 (468)
T ss_pred CccHHHHHHHHHhcccceeee
Confidence 999999999999887655443
No 57
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.50 E-value=1.1e-13 Score=107.42 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=96.0
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHh---ccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~---~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
|++++.++...++..+.+..++|| ..++...+...++++|++ ++|++.|+++|.+.+. ..++.||++..+.|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 578999999999999998888888 447788999999999999 9999999999999854 589999999878899
Q ss_pred EEEEeCCCCceec-CCCCCCHHHHHHHHHHHhcCC
Q 013976 230 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 263 (432)
Q Consensus 230 i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~ 263 (432)
++|.+.+++.+|. +.+.++.++|.+|+++++.|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999886667888 788999999999999999985
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.49 E-value=1.2e-13 Score=105.37 Aligned_cols=90 Identities=19% Similarity=0.400 Sum_probs=79.3
Q ss_pred hhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCc
Q 013976 290 DEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDP 367 (432)
Q Consensus 290 ~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~ 367 (432)
...+.+.+++++|+||++||+.|+.+.+.+.++++.+.+ ++.++.+|++.+.. .++++.++|++++|++|+.+.
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~-- 81 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK-- 81 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE--
Confidence 445667789999999999999999999999999999976 69999999988765 689999999999999887664
Q ss_pred eeccCCCCHHHHHHHHH
Q 013976 368 INVDVDRTVVALYKFLK 384 (432)
Q Consensus 368 ~~y~g~~~~~~l~~fi~ 384 (432)
.+.|..+.+.|.+||+
T Consensus 82 -~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 -EISGVKMKSEYREFIE 97 (97)
T ss_pred -EEeCCccHHHHHHhhC
Confidence 7889999999999874
No 59
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.47 E-value=1.8e-13 Score=116.85 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=96.7
Q ss_pred HHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCE
Q 013976 255 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 332 (432)
Q Consensus 255 fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~ 332 (432)
|++.|...++....+... ...-|.|..++..+|...+...+ ..|+|.||++||++|+.+.+.|.+||..+.. +
T Consensus 60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---v 134 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---T 134 (192)
T ss_pred HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---C
Confidence 777776665543322111 12357899999999998876554 4899999999999999999999999999864 8
Q ss_pred EEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhc
Q 013976 333 VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 386 (432)
Q Consensus 333 ~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 386 (432)
+|++||++.. .+.|.+.++||+++|++|..+.+.+.+. | ..+.+.|..+|.+.
T Consensus 135 kFvkI~ad~~-~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 135 KFVKIISTQC-IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEEhHHh-HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999999764 5789999999999999998775222221 2 56778888888754
No 60
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.46 E-value=2.9e-13 Score=104.84 Aligned_cols=91 Identities=23% Similarity=0.401 Sum_probs=75.4
Q ss_pred cchhhhhcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEE
Q 013976 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFF 358 (432)
Q Consensus 288 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~ 358 (432)
.|.+.+ ..+++++|.||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+.. .++++.++|++++|
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 455544 5678999999999999999999988 678888876 79999999987532 47999999999999
Q ss_pred eC--CCcccCceeccCCCCHHHHHHHHH
Q 013976 359 PA--GNKSFDPINVDVDRTVVALYKFLK 384 (432)
Q Consensus 359 ~~--g~~~~~~~~y~g~~~~~~l~~fi~ 384 (432)
.+ |+. +..+.|..+.+.|.++|+
T Consensus 80 ~~~~g~~---~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPE---PLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCC---CcccccccCHHHHHHHhC
Confidence 84 443 458899999999998874
No 61
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.46 E-value=2.4e-13 Score=103.97 Aligned_cols=91 Identities=23% Similarity=0.441 Sum_probs=75.0
Q ss_pred ccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
++|++.+... ++.++|.||++||.+|+.+.+.|++++..+.. .+.++.+|++++.. .++++.++|++++|++|+.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 5677766544 58999999999999999999999999999843 79999999987765 6899999999999998876
Q ss_pred ccCceeccCCCCHHHHHHHH
Q 013976 364 SFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 364 ~~~~~~y~g~~~~~~l~~fi 383 (432)
+. .+.| .+.+.|.+.|
T Consensus 81 ~~---~~~g-~~~~~l~~~~ 96 (97)
T cd02984 81 VD---RVSG-ADPKELAKKV 96 (97)
T ss_pred EE---EEeC-CCHHHHHHhh
Confidence 53 4455 5667777655
No 62
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.45 E-value=1.1e-13 Score=120.13 Aligned_cols=105 Identities=26% Similarity=0.501 Sum_probs=91.5
Q ss_pred ecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC---CCEEEEEEeCCCccc--ccCCCCCCceEEEEe
Q 013976 285 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--HRAKSDGFPTILFFP 359 (432)
Q Consensus 285 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~---~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~ 359 (432)
+..|++..+ +....++|.|||.||..++.++|+|.+.|..++.. .++.+|.+||+.++. .+|.|..|||+.+|+
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777755 66889999999999999999999999999988742 479999999999988 799999999999999
Q ss_pred CCCcccCceeccCCCCHHHHHHHHHhcCCCCCc
Q 013976 360 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 392 (432)
Q Consensus 360 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~ 392 (432)
+|.... ..|.|.++++.|.+||+++.+-+++
T Consensus 81 nG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~ 111 (375)
T KOG0912|consen 81 NGEMMK--REYRGQRSVEALIEFIEKQLSDPIN 111 (375)
T ss_pred ccchhh--hhhccchhHHHHHHHHHHHhccHHH
Confidence 997642 2799999999999999999876643
No 63
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.8e-13 Score=114.60 Aligned_cols=99 Identities=25% Similarity=0.440 Sum_probs=85.3
Q ss_pred cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 013976 286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~ 362 (432)
...|...+... .+.++|.|+|.||++|+.+.|+|..|+.+|.+ ..|.++|+++... ..++|...||+++|++|.
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ 85 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGV 85 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEEEEecCe
Confidence 36677766443 47999999999999999999999999999965 8999999999887 589999999999999999
Q ss_pred cccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976 363 KSFDPINVDVDRTVVALYKFLKKNASIPF 391 (432)
Q Consensus 363 ~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 391 (432)
+++ .+.| .++..|.+-|.++++...
T Consensus 86 kid---~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 86 KID---QIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred Eee---eecC-CCHHHHHHHHHHHhccCc
Confidence 875 6665 899999999999986443
No 64
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.44 E-value=3.6e-13 Score=102.43 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=67.0
Q ss_pred ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
+.|++.+.+ .++.++|.|+|+||++|+.+.|.+.++|..+++ .+.|+.+|++++.. ..++|...||+++|++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 356666654 478999999999999999999999999999975 49999999999988 7899999999999999976
Q ss_pred c
Q 013976 364 S 364 (432)
Q Consensus 364 ~ 364 (432)
.
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 4
No 65
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.42 E-value=7.7e-13 Score=103.55 Aligned_cols=90 Identities=12% Similarity=0.182 Sum_probs=76.9
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 372 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g 372 (432)
.....++|+||++||++|+.+.|.+++++..+ + .+.|..+|+++++. ..++|.++|++++|++|... ..+.|.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYG 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEe
Confidence 34567899999999999999999999999876 3 59999999998776 68999999999999988665 4567999
Q ss_pred CCCHHHHHHHHHhcCC
Q 013976 373 DRTVVALYKFLKKNAS 388 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~ 388 (432)
..+...+.+||...+.
T Consensus 96 ~~~~~el~~~i~~i~~ 111 (113)
T cd02975 96 LPAGYEFASLIEDIVR 111 (113)
T ss_pred cCchHHHHHHHHHHHh
Confidence 8889999999987643
No 66
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.42 E-value=3.5e-10 Score=100.92 Aligned_cols=310 Identities=15% Similarity=0.171 Sum_probs=195.7
Q ss_pred ceeeCCHHHHHHHhhcCCeEEEEEecCCCcc--hHHH------HHH-Hhc--cCCCceEEEeC---cHHHHhHcCCCCCC
Q 013976 48 IYNITTLDEAERVLTSETKVVLGYLNSLVGS--ESEV------LAD-ASR--LEDDVNFYQTT---NPDVAKIFHLDSKV 113 (432)
Q Consensus 48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~--~~~~------f~~-~a~--~~~~~~F~~~~---~~~~~~~~~~~~~~ 113 (432)
+..| +...+++.++..++.+|.|+.+..+. ..+. +.+ +|+ -...+.||.++ +..+++++|+..
T Consensus 36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 5666 57889999999999999998665443 2222 334 443 34678999854 668999999987
Q ss_pred CCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccC-C-CcceEEEEEeCcchhhhHHHHHH
Q 013976 114 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-P-IKNQLLLFAVSNDSEKLLPVFEE 191 (432)
Q Consensus 114 ~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~ 191 (432)
.++|.+|+ ++..+.| +|.++++.|..||..-.-..|..++.+.-.+.+.. . ...+|-+|.+ .... ....|.+
T Consensus 113 -~~SiyVfk--d~~~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~-~~s~-~yk~Fee 186 (383)
T PF01216_consen 113 -EGSIYVFK--DGEVIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKS-EDSE-HYKEFEE 186 (383)
T ss_dssp -TTEEEEEE--TTEEEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SS-TTSH-HHHHHHH
T ss_pred -cCcEEEEE--CCcEEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCC-CCcH-HHHHHHH
Confidence 59999999 4678899 99999999999999888777888888665443332 2 2334444533 3233 3456899
Q ss_pred HHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC-CCCCCHHHHHHHHHHHhcCCcCccccC
Q 013976 192 AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKS 270 (432)
Q Consensus 192 ~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-~~~~~~~~i~~fi~~~~~g~l~~~~~s 270 (432)
+|..|+..|.|..+= .+.+++.++++- --+-++.+=...+... ....+.+.|.+||++...
T Consensus 187 AAe~F~p~IkFfAtf------d~~vAk~L~lK~---nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r--------- 248 (383)
T PF01216_consen 187 AAEHFQPYIKFFATF------DKKVAKKLGLKL---NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR--------- 248 (383)
T ss_dssp HHHHCTTTSEEEEE-------SHHHHHHHT-ST---T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S---------
T ss_pred HHHhhcCceeEEEEe------cchhhhhcCccc---cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch---------
Confidence 999999988877642 457899999963 3444443322233333 335789999999999653
Q ss_pred CCCCCCCCCceEEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----
Q 013976 271 DPIPETNDGDVKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----- 344 (432)
Q Consensus 271 e~~p~~~~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----- 344 (432)
..+++|+..++-+...++ ++..+|-|.-.-...-.++..++.++|+...+++++.++.||-+.-+.
T Consensus 249 --------ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yW 320 (383)
T PF01216_consen 249 --------PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYW 320 (383)
T ss_dssp ---------SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHH
T ss_pred --------hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHH
Confidence 236778888877766554 467888887777778889999999999999988899999999887766
Q ss_pred -ccCCCC-CCceEEEEeCCCcccCceecc-----CCCCHHHHHHHHHhcCCCCCccc
Q 013976 345 -HRAKSD-GFPTILFFPAGNKSFDPINVD-----VDRTVVALYKFLKKNASIPFKIQ 394 (432)
Q Consensus 345 -~~~~i~-~~P~i~~~~~g~~~~~~~~y~-----g~~~~~~l~~fi~~~~~~~~~~~ 394 (432)
..|+|. .-|.|-+..-.... .+=+. ...+++.|..||.+..+.++...
T Consensus 321 E~tF~Idl~~PqIGvVnvtdad--svW~dm~d~~d~pt~~~LedWieDVlsg~i~~e 375 (383)
T PF01216_consen 321 EKTFGIDLSRPQIGVVNVTDAD--SVWMDMDDDDDLPTAEELEDWIEDVLSGKINTE 375 (383)
T ss_dssp HHHHTT-TTS-EEEEEETTTSE--EEEC-STTTSS---HHHHHHHHHHHHCTCCTB-
T ss_pred HhhcCccccCCceeEEeccccc--cchhccCCcccCCcHHHHHHHHHHHhcCCCCCc
Confidence 234444 23999888554431 11121 14589999999999998776554
No 67
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.41 E-value=2.4e-12 Score=99.17 Aligned_cols=95 Identities=21% Similarity=0.363 Sum_probs=85.2
Q ss_pred ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEe----
Q 013976 48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK---- 122 (432)
Q Consensus 48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~---- 122 (432)
++.|++.+++++|+...+++|||||.+.+.+.++.|.++| .+|+++.|+++.++++++.+++ . |++++||
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 5688899999999999999999999998889999999999 7789999999999999999988 5 8899994
Q ss_pred --cCCCceecccCCCCCHHHHHHHHHhc
Q 013976 123 --KETEKISYFADGKFDKSTIADFVFSN 148 (432)
Q Consensus 123 --~~~~~~~~y~~g~~~~~~l~~fi~~~ 148 (432)
..++....| .|+++.++|..||..+
T Consensus 77 ~~k~de~~~~y-~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKF-DGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccc-cCcCCHHHHHHHHHhh
Confidence 456777789 9999999999999875
No 68
>PTZ00051 thioredoxin; Provisional
Probab=99.41 E-value=9.4e-13 Score=100.82 Aligned_cols=92 Identities=26% Similarity=0.491 Sum_probs=73.6
Q ss_pred eEEEec-ccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 281 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 281 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
+..++. ++|.+. .+.++.++|.||++||.+|+.+.+.|.+++..+. ++.|+.+|++.+.. .++++.++|++++
T Consensus 2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 344444 556664 4677899999999999999999999999999765 48999999997765 6899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHH
Q 013976 358 FPAGNKSFDPINVDVDRTVVALY 380 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~ 380 (432)
|++|+.+. .+.|. ..+.|.
T Consensus 78 ~~~g~~~~---~~~G~-~~~~~~ 96 (98)
T PTZ00051 78 FKNGSVVD---TLLGA-NDEALK 96 (98)
T ss_pred EeCCeEEE---EEeCC-CHHHhh
Confidence 99998764 66663 445443
No 69
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.40 E-value=3.7e-12 Score=97.79 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=87.5
Q ss_pred CceeeCCHHHHHHHhh-cCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecC
Q 013976 47 GIYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE 124 (432)
Q Consensus 47 ~~~~i~~~~~l~~~~~-~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~ 124 (432)
+++.|++.++++.|++ .++++|||||.+.+.+.++.|.++| .+|+++.|+++.++++...+++.. |++++++..
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~~----~~i~l~~~~ 76 (102)
T cd03066 1 PVEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLKM----NEVDFYEPF 76 (102)
T ss_pred CceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCCC----CcEEEeCCC
Confidence 3678899999999999 8999999999999999999999999 678999999999999999998875 999999887
Q ss_pred CCceecccCCCCCHHHHHHHHHhcC
Q 013976 125 TEKISYFADGKFDKSTIADFVFSNK 149 (432)
Q Consensus 125 ~~~~~~y~~g~~~~~~l~~fi~~~~ 149 (432)
++....|..|.++.+.|..||..+.
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 7777778456789999999998753
No 70
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.39 E-value=2.4e-11 Score=104.67 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCHHHHHHHHHHHhcC
Q 013976 184 KLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG 262 (432)
Q Consensus 184 ~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g 262 (432)
.....|.++|..+.+.+.|+.+. ...+++.+|+.. |+++++.....++..|.|. ++.+.|.+||....-
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~------~~~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~- 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF------NEELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF- 76 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc------HHHHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-
Confidence 45678999999999889999987 236788888865 8898887766667788887 899999999999653
Q ss_pred CcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 263 KLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 263 ~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
+.+..++..++..+. ..+.+ ++++|..........+...+..+|+.+++ ++.|+.+|++.
T Consensus 77 ----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~ 137 (184)
T PF13848_consen 77 ----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADD 137 (184)
T ss_dssp ----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTT
T ss_pred ----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHH
Confidence 347889999999976 44444 78888777788889999999999999987 79999999996
Q ss_pred ccc--ccCCCC--CCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976 342 NEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 342 ~~~--~~~~i~--~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
... ..++++ .+|+++++...... ....+.|..+.++|.+||++
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGK-YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence 555 567777 89999999743332 22234789999999999974
No 71
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.39 E-value=4.8e-12 Score=96.62 Aligned_cols=96 Identities=25% Similarity=0.472 Sum_probs=86.1
Q ss_pred ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCC
Q 013976 48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETE 126 (432)
Q Consensus 48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~ 126 (432)
+..|++.++++.++...+++|||||.+.+++.+..|.++| .+++++.|+++++.++++++++.. |++++||+.++
T Consensus 1 ~~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~~ 76 (97)
T cd02981 1 VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKP----GSVVLFKPFEE 76 (97)
T ss_pred CeecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCC----CceEEeCCccc
Confidence 3578899999999999999999999998889999999999 677899999999999999988765 89999998877
Q ss_pred ceecccCCCCCHHHHHHHHHhc
Q 013976 127 KISYFADGKFDKSTIADFVFSN 148 (432)
Q Consensus 127 ~~~~y~~g~~~~~~l~~fi~~~ 148 (432)
....| .|..+.++|.+||..+
T Consensus 77 ~~~~y-~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 77 EPVEY-DGEFTEESLVEFIKDN 97 (97)
T ss_pred CCccC-CCCCCHHHHHHHHHhC
Confidence 78889 9999999999999753
No 72
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.38 E-value=3.1e-12 Score=98.47 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=88.2
Q ss_pred CceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 151 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
|-+.+++.++|......+.++++.||++| ++|+.+.+.|.++|+++++.+.|+.+||++ ++.+++.+++..+ |+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt 75 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSY--PS 75 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCcc--CE
Confidence 45778999999998888878899999999 999999999999999999999999999998 5689999999988 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
++++..+. ....+.|..+.+.|.+|.
T Consensus 76 ~~~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEEcCCC-CcccCCCCCCHHHHHhhC
Confidence 99886553 456788999999998873
No 73
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.36 E-value=3.5e-12 Score=100.92 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=75.9
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------------cc-
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------HR- 346 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------------~~- 346 (432)
+..++..+|.+.+ .+++.++|+|+++||++|+.+.|.+.++++.. ++.++.+|++.+.. ..
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4556777788866 55778999999999999999999999999982 46688888775431 22
Q ss_pred ---CCCCCCceEEEEeCCCcccCceeccC-CCCHHHHHHHHH
Q 013976 347 ---AKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK 384 (432)
Q Consensus 347 ---~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~ 384 (432)
.++.++||+++|++|+.+. ...| ..+.+.|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence 3566799999999999875 6777 667999999874
No 74
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=4e-12 Score=98.44 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=87.6
Q ss_pred CceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 151 PLVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 151 p~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
|.+.+++.+++...+ +.+.++++.||++| +.|+.+.+.|.+++.++.+.+.|+.+||+. ++.+++.++|.++ |
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~--P 75 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAY--P 75 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcc--c
Confidence 457788999998865 44567788899999 999999999999999999899999999998 5689999999998 9
Q ss_pred EEEEEeCCCCceecCCCCCC-HHHHHHHH
Q 013976 229 VLAYTGNDDAKKHILDGELT-LDKIKTFG 256 (432)
Q Consensus 229 ~i~i~~~~~~~~y~~~~~~~-~~~i~~fi 256 (432)
+++++..++...+.+.|..+ .++|.+||
T Consensus 76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99999877556778899887 99999885
No 75
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.34 E-value=6e-12 Score=94.94 Aligned_cols=89 Identities=30% Similarity=0.600 Sum_probs=75.6
Q ss_pred cchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCccc
Q 013976 288 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSF 365 (432)
Q Consensus 288 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~ 365 (432)
+|...+ ...++++|+||++||..|..+.+.+.+++.. . .++.++.+|++.+.. ..+++.++|++++|++|..+.
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 456655 3348999999999999999999999999988 3 369999999998665 689999999999999987554
Q ss_pred CceeccCCCCHHHHHHHH
Q 013976 366 DPINVDVDRTVVALYKFL 383 (432)
Q Consensus 366 ~~~~y~g~~~~~~l~~fi 383 (432)
.+.|..+.+.|.+||
T Consensus 78 ---~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 ---RVVGADPKEELEEFL 92 (93)
T ss_pred ---EEecCCCHHHHHHHh
Confidence 778888889998887
No 76
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.33 E-value=7.5e-12 Score=96.74 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC--CCceEEEEeC--CCcccCceec
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPA--GNKSFDPINV 370 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~--~~P~i~~~~~--g~~~~~~~~y 370 (432)
++++++.|+++||++|+.+.+.+.++|+.+++ ++.|+.+|++++.. ..+++. ++|++++++. |.+. .+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~----~~ 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY----LM 85 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc----CC
Confidence 58999999999999999999999999999997 69999999999766 689999 9999999988 5443 34
Q ss_pred cC-CCCHHHHHHHHHhc
Q 013976 371 DV-DRTVVALYKFLKKN 386 (432)
Q Consensus 371 ~g-~~~~~~l~~fi~~~ 386 (432)
.+ ..+.++|.+||.+.
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 44 45999999999875
No 77
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.33 E-value=1.7e-11 Score=94.53 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=84.8
Q ss_pred CceeeCCHHHHHHHhhcC-CeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEE---
Q 013976 47 GIYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMV--- 121 (432)
Q Consensus 47 ~~~~i~~~~~l~~~~~~~-~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~--- 121 (432)
+++.|.+.++++.++... +++|||||.+.+...++.|.++| .+|+++.|+++++.++.+.+++.. |.+++|
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~~----~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVSP----GQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCCC----CceEEECcH
Confidence 467899999999999887 99999999998888999999999 788999999999999999998875 889999
Q ss_pred ---ecCCCceecccCCC-CCHHH-HHHHHHhc
Q 013976 122 ---KKETEKISYFADGK-FDKST-IADFVFSN 148 (432)
Q Consensus 122 ---~~~~~~~~~y~~g~-~~~~~-l~~fi~~~ 148 (432)
+..++....| .|. .+.++ |.+||+.+
T Consensus 77 ~~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVL-NKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeee-eccccchHHHHHHHHhcC
Confidence 4566788899 877 67766 99999864
No 78
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=7.5e-12 Score=107.11 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=77.4
Q ss_pred cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCccc
Q 013976 286 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSF 365 (432)
Q Consensus 286 ~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~ 365 (432)
.++|.+.+..+.+.++++|||+||++|+.+.+++.+|++.+.+ +.|++||++ ++|.++|++++|++|+.++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc------cCcccceEEEEEECCEEEe
Confidence 3566666644457899999999999999999999999999854 999999987 9999999999999999886
Q ss_pred CceeccCCCCHHHHHHHHHhcCCC
Q 013976 366 DPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 366 ~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
++.| .+...|.+++..+.+.
T Consensus 77 ---r~~G-~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 77 ---SLEG-CNTSTLVSFIRGWAQK 96 (204)
T ss_pred ---eeeC-CCHHHHHHHHHHHcCC
Confidence 6776 5688888888887764
No 79
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.32 E-value=9.4e-12 Score=96.68 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=86.8
Q ss_pred CCceeecCCCchhhh---ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh-hhhCCCC
Q 013976 150 LPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS-EYFGITG 224 (432)
Q Consensus 150 ~p~v~~l~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~-~~~~i~~ 224 (432)
.+.|.+++.++|+.. ...+..+++.||++| ++|+.+.+.++++|+++++.+.|+.|||+. +..+| +.|+|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCcc
Confidence 355889999999875 567778899999999 999999999999999999999999999997 45788 5899999
Q ss_pred CCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
+ |++.++.++. ....|.|..+.+.|..|+
T Consensus 85 ~--PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 F--PVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred c--CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 8 9999996554 456788999999998873
No 80
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.32 E-value=8.3e-12 Score=96.47 Aligned_cols=101 Identities=19% Similarity=0.322 Sum_probs=89.1
Q ss_pred eeecCCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976 153 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 230 (432)
Q Consensus 153 v~~l~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i 230 (432)
|..++.+++...+.. +.+++++||++| +.|+.+.+.|.+++..+.+.+.|+.+|+.. ++.+++.|+++.. |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSV--PTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSS--SEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCC--CEE
Confidence 467899999998876 778888899999 999999999999999999889999999997 6789999999998 999
Q ss_pred EEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 231 AYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 231 ~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
+++.+++. ...+.|.++.++|.+||++.
T Consensus 76 ~~~~~g~~-~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEE-EEEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcE-EEEEECCCCHHHHHHHHHcC
Confidence 99977653 33778999999999999863
No 81
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.30 E-value=1.2e-11 Score=95.67 Aligned_cols=97 Identities=38% Similarity=0.501 Sum_probs=79.5
Q ss_pred hhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976 161 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 239 (432)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~ 239 (432)
+..+...+.+++++|+++| ++|+.+.+.++++|+++++++.|+++|+++ ++.+++.||+.....|+++++...++.
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGK 81 (103)
T ss_pred HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEeccccc
Confidence 3333344567778888888 799999999999999999999999999998 568999999994456999999886556
Q ss_pred eecCCCC-CCHHHHHHHHHHHh
Q 013976 240 KHILDGE-LTLDKIKTFGEDFL 260 (432)
Q Consensus 240 ~y~~~~~-~~~~~i~~fi~~~~ 260 (432)
+|.+.+. ++.++|.+|+++++
T Consensus 82 k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 82 KYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred ccCCCccccCHHHHHHHHHhhC
Confidence 7777554 59999999999863
No 82
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.29 E-value=1.4e-11 Score=96.02 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=86.4
Q ss_pred ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc------CceEEEEEecCCcccccchhhhhCCCC
Q 013976 152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITG 224 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~------~~i~f~~vd~~~~~~~~~l~~~~~i~~ 224 (432)
.+.+++.+++...+..+..++|.||++| ++|+.+.+.|.++|..++ +++.|+.+||+. ++.+++.||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCCCCc
Confidence 3678899999998888877888999999 999999999999999864 258999999998 568999999999
Q ss_pred CCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
+ |++.++.+++.....+.|..+.+.|.+||
T Consensus 79 ~--Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 Y--PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C--CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 8 99998876653456788999999999985
No 83
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.26 E-value=3.2e-10 Score=99.78 Aligned_cols=181 Identities=7% Similarity=0.087 Sum_probs=130.4
Q ss_pred CCeEEEEEec---CCCcc---hHHHHHHHhccCCCce--EEEe---CcHHHHhHcCCCCCCCCCeEEEEecCCCceeccc
Q 013976 64 ETKVVLGYLN---SLVGS---ESEVLADASRLEDDVN--FYQT---TNPDVAKIFHLDSKVNRPALVMVKKETEKISYFA 132 (432)
Q Consensus 64 ~~~~vv~f~~---~~~~~---~~~~f~~~a~~~~~~~--F~~~---~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~y~ 132 (432)
+.+.++.|+. +.|++ ....+.++++..+.+. ++.+ .++++++.|++.. .|++++|+.+......|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~---~Pt~~~f~~g~~~~~~~- 94 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER---VPTTIILEEGKDGGIRY- 94 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc---cCEEEEEeCCeeeEEEE-
Confidence 4555666766 44433 5556677774444443 4444 4789999999987 69999999754323467
Q ss_pred CCCCCHHHHHHHHHhcC--CCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC
Q 013976 133 DGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD 208 (432)
Q Consensus 133 ~g~~~~~~l~~fi~~~~--~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~ 208 (432)
.|..+.+.|..||.... .+.-..+++++...+-....+..|. |+++| +.|+.+.+.+++++.+. +++.+..+|.+
T Consensus 95 ~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~ 173 (215)
T TIGR02187 95 TGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEAN 173 (215)
T ss_pred eecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCC
Confidence 88888888999987652 2233455555555554445555555 77899 99999999999999884 56999999998
Q ss_pred CcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976 209 NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 209 ~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
. .+.++..+|+... |+++++..+ .. +.|..+.+.+.+|+.+
T Consensus 174 ~---~~~~~~~~~V~~v--Ptl~i~~~~--~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 174 E---NPDLAEKYGVMSV--PKIVINKGV--EE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred C---CHHHHHHhCCccC--CEEEEecCC--EE--EECCCCHHHHHHHHHh
Confidence 7 5689999999988 999887433 22 6788888999999875
No 84
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.25 E-value=4.1e-11 Score=92.61 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=85.7
Q ss_pred eeecCCCchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976 153 VTIFTRENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 230 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i 230 (432)
+.+++.+++...+..+ .+++++||++| +.|+.+.+.|.+++.++.+.+.|+.+|++. +..+++.|++.+. |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~--P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGF--PTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCcc--CEE
Confidence 5678888888876444 34788899999 999999999999999999999999999998 5689999999887 999
Q ss_pred EEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 231 AYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 231 ~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
+++.++....+.|.|..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 99987755677899999999999997
No 85
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.24 E-value=1.3e-10 Score=92.85 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=87.9
Q ss_pred CceeecCCCchhhhccCCCcceEEEEEeC------cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCC
Q 013976 151 PLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGIT 223 (432)
Q Consensus 151 p~v~~l~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~ 223 (432)
|-+.+++.++...-......+=++.|.+. .....+...++++|++|+++ +.|+++|.... ..+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCCC
Confidence 44677777665332222234445555553 34567899999999999999 99999999984 4689999998
Q ss_pred CCCCcEEEEEeCCCCceec-CCCCCCHHHHHHHHHHHhcCCcCc
Q 013976 224 GEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKP 266 (432)
Q Consensus 224 ~~~~P~i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~g~l~~ 266 (432)
+...|++++++.+++ +|. +.|+++.++|.+|+++++.|++..
T Consensus 79 ~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 79 GFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred ccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 777899999988765 887 789999999999999999999854
No 86
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.23 E-value=3.6e-11 Score=96.39 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=72.7
Q ss_pred cCC-CcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCcc--------------c-ccCCCCCCceE
Q 013976 295 DES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNE--------------H-HRAKSDGFPTI 355 (432)
Q Consensus 295 ~~~-~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~--------------~-~~~~i~~~P~i 355 (432)
+.+ ++++|+||++||++|+.+.+.+. .+...+++ ++.++.+|++.+. . ..+++.++|++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 556 89999999999999999999885 56666765 6899999988641 1 57899999999
Q ss_pred EEEeCC--CcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976 356 LFFPAG--NKSFDPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 356 ~~~~~g--~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
++|.++ +.+ .++.|..+.+.+.++|++..+.
T Consensus 89 ~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 IFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEcCCCCcee---EEecCCCCHHHHHHHHHHHHhh
Confidence 999764 443 3788888899999999887654
No 87
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.22 E-value=7.2e-11 Score=92.24 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=87.2
Q ss_pred eeecCCCchhhhcc-CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEE
Q 013976 153 VTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 230 (432)
Q Consensus 153 v~~l~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i 230 (432)
+.+++.+++...+. .+.++++.||++| +.|+.+.+.+.++|+.+.+.+.|+.+|++... +..+++.|++.++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~--Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF--PTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC--CEE
Confidence 56889999988754 4555788899999 99999999999999999998999999999854 5689999999998 999
Q ss_pred EEEeCCC----CceecCCCCCCHHHHHHHHH
Q 013976 231 AYTGNDD----AKKHILDGELTLDKIKTFGE 257 (432)
Q Consensus 231 ~i~~~~~----~~~y~~~~~~~~~~i~~fi~ 257 (432)
+++..++ ...+.|.|..+.++|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998775 24567889999999999973
No 88
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.22 E-value=2.5e-11 Score=95.46 Aligned_cols=93 Identities=24% Similarity=0.482 Sum_probs=64.8
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCC--CceEEEE-eCCCcccCcee
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDG--FPTILFF-PAGNKSFDPIN 369 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~--~P~i~~~-~~g~~~~~~~~ 369 (432)
...+++++|.|||+||++|+.+.|.+.+++.......++..+.+|.+.... ..+++.+ +|++++| ++|+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 356789999999999999999999999987765432244444444333222 5677775 9999999 57777643445
Q ss_pred ccCCCCHHHHHHHHHhc
Q 013976 370 VDVDRTVVALYKFLKKN 386 (432)
Q Consensus 370 y~g~~~~~~l~~fi~~~ 386 (432)
..|..+.....++|...
T Consensus 96 ~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 96 KKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCCccccccCCCHHHH
Confidence 66666666655555544
No 89
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.21 E-value=9e-11 Score=86.50 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=67.5
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 377 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 377 (432)
.+..||++||++|+.+.+.+++++..++. .+.+..+|++++.. .++++.++|++++ +|. . .+.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~----~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-V----EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-E----EEecCCCHH
Confidence 46789999999999999999999999976 59999999987766 6899999999986 554 2 788988999
Q ss_pred HHHHHHHhc
Q 013976 378 ALYKFLKKN 386 (432)
Q Consensus 378 ~l~~fi~~~ 386 (432)
.|.++|.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998764
No 90
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.20 E-value=6.7e-11 Score=92.15 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=63.7
Q ss_pred cccchhhhhcC-CCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-------c--ccCC
Q 013976 286 GNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------H--HRAK 348 (432)
Q Consensus 286 ~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-------~--~~~~ 348 (432)
.++|.+.+.+. +++++|.||| +||++|+.+.|.+++++..+.+ ++.|++||++.+. . ..+.
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence 36677766543 5799999999 9999999999999999999985 5999999998642 2 5678
Q ss_pred CC-CCceEEEEeCCCcc
Q 013976 349 SD-GFPTILFFPAGNKS 364 (432)
Q Consensus 349 i~-~~P~i~~~~~g~~~ 364 (432)
|. ++||+++|+.|.++
T Consensus 87 I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cccCCCEEEEEcCCcee
Confidence 88 99999999877543
No 91
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.19 E-value=9.8e-11 Score=91.59 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=86.7
Q ss_pred ceeecCCCchhhhccCCCcceEEEEEeC--c--chh--hhHHHHHHHHHhc--cCceEEEEEecCCcccccchhhhhCCC
Q 013976 152 LVTIFTRENAPSVFESPIKNQLLLFAVS--N--DSE--KLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGIT 223 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~--~--~~~--~~~~~~~~~a~~~--~~~i~f~~vd~~~~~~~~~l~~~~~i~ 223 (432)
.+..++.+||...+..+...++++|.+| + +|+ .+.+.+.++|.++ .+++.|+.||++. ++.+++.|||+
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~~~~I~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAKKLGLD 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHHHcCCc
Confidence 4778899999988877777777777776 4 499 7788999999999 7889999999998 67999999999
Q ss_pred CCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976 224 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 260 (432)
Q Consensus 224 ~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 260 (432)
+. |+++++.+++ ...+.|.++.+.|.+|+++.+
T Consensus 87 ~i--PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EE--DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cc--cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence 98 9999997664 334889999999999999864
No 92
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.18 E-value=9e-11 Score=90.88 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=82.9
Q ss_pred eeecCCCchhhhccCCCcceEEEEEe----C-cchhhhHHHHHHHHHhcc-CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~----~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
|.+++.+|...++.. +.++.+|.- . .+.+.+...+.++|++|+ +++.|+++|..++ ...++.||++...
T Consensus 1 v~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCccc
Confidence 467889999888643 334444432 3 567889999999999999 7999999999984 3578999999766
Q ss_pred --CcEEEEEeCCCCceecCCCCC-CHHHHHHHHHHHh
Q 013976 227 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 260 (432)
Q Consensus 227 --~P~i~i~~~~~~~~y~~~~~~-~~~~i~~fi~~~~ 260 (432)
.|+++|.+.++ .+|.+.+++ +.++|.+|+++|+
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 89999987654 789988889 9999999999874
No 93
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.18 E-value=1.2e-10 Score=89.78 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=79.8
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhcc---CceEEEEEecCCcc--cccchhhhhCCC--CC
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED--VGKPVSEYFGIT--GE 225 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~--~~~~l~~~~~i~--~~ 225 (432)
+..|++.||+.++..+...++.||++|+-|.+ .+.++++|.++. +.|.++.|||+++. -+.+||+.|||+ ++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 56799999999999888888999995544444 366666666663 24999999995411 046899999999 77
Q ss_pred CCcEEEEEeCCC-CceecCCCC-CCHHHHHHHHHH
Q 013976 226 APKVLAYTGNDD-AKKHILDGE-LTLDKIKTFGED 258 (432)
Q Consensus 226 ~~P~i~i~~~~~-~~~y~~~~~-~~~~~i~~fi~~ 258 (432)
|+|.++.++. .....|.|. ++.+.|.+||..
T Consensus 82 --PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 82 --PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred --CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 9999998763 345678996 999999999976
No 94
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.16 E-value=1.4e-10 Score=90.36 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=84.2
Q ss_pred eeecCCCchhhhcc---CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhh-hhCCCCCC
Q 013976 153 VTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITGEA 226 (432)
Q Consensus 153 v~~l~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~-~~~i~~~~ 226 (432)
|.+++.+++..+.. .++++++.||++| ++|+.+.+.|.++|..+++. +.++.+|++.. ...++. .+++..+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~- 79 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSF- 79 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcC-
Confidence 67889999988763 4678889999999 99999999999999999974 99999999873 246675 5899888
Q ss_pred CcEEEEEeCCCCceecCCCC-CCHHHHHHHH
Q 013976 227 PKVLAYTGNDDAKKHILDGE-LTLDKIKTFG 256 (432)
Q Consensus 227 ~P~i~i~~~~~~~~y~~~~~-~~~~~i~~fi 256 (432)
|++.++..+....+.|.|. ++.++|..||
T Consensus 80 -Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 -PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred -CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999998776677888885 8999999885
No 95
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.15 E-value=1.8e-10 Score=88.75 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=85.3
Q ss_pred cCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976 156 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i 232 (432)
++++++...+..+.+.+++|+++| +.|+.+.+.+.++|..+.+ .+.|+.+|++. .+.+++.|++... |++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~--P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGF--PTIKF 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcC--CEEEE
Confidence 456777777777777889999999 9999999999999999987 69999999988 5689999999887 99998
Q ss_pred EeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 233 TGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 233 ~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
+..++. .+.+.|..+.+.|..||+++
T Consensus 76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 877754 77889999999999999874
No 96
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.1e-10 Score=89.93 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=91.3
Q ss_pred CCceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCC
Q 013976 150 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 227 (432)
Q Consensus 150 ~p~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~ 227 (432)
.+.+..++...++. +.++..|+++.|++.| ++|+.+.+.+++++.+|.|++.|+.+|.++ +.++...|+|+..
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~av-- 116 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAV-- 116 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeee--
Confidence 44666777777765 5677788899999999 999999999999999999999999999998 5699999999988
Q ss_pred cEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976 228 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 228 P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 261 (432)
|+++++.++. +.-.+.|..+.+.+.+||++++.
T Consensus 117 PtvlvfknGe-~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 117 PTVLVFKNGE-KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eEEEEEECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence 9999997764 33457788999999999999874
No 97
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.11 E-value=5.1e-10 Score=86.05 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=83.3
Q ss_pred ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.|.+++.++|..++.. .+++.||++| ++|+.+.+.|.+++..+++ .+.|+.+|+++ ++.+++.|++..+ |+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~--Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTAL--PT 74 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCccc--CE
Confidence 3678999999987753 3789999999 9999999999999998875 59999999987 5688999999998 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
++++..+ ....+.|..+.++|.+|+++
T Consensus 75 ~~~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 9887544 34677899999999999864
No 98
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.10 E-value=3.2e-10 Score=87.40 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=83.4
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
+.+++.+++...+..+ ++++.||++| ++|+.+.+.+.+++.++++ .+.|+.+|++. ...+++.|++... |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P 75 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY--P 75 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC--C
Confidence 5678889998887766 5888899999 9999999999999999987 79999999998 4588999999887 9
Q ss_pred EEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 229 VLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
+++++.++. ....+.|..+.+.|.+||
T Consensus 76 t~~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 999886554 556788999999998885
No 99
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.1e-10 Score=110.78 Aligned_cols=115 Identities=27% Similarity=0.516 Sum_probs=91.7
Q ss_pred CCCCceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc----ccCCCC
Q 013976 276 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSD 350 (432)
Q Consensus 276 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~----~~~~i~ 350 (432)
+.+.+|..|+..+|+..+..+.+..+|.||++||++|..+.|.|+++|+.+... +=+.++.|||..... ..++|.
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 345789999999999999888889999999999999999999999999999874 358999999987766 479999
Q ss_pred CCceEEEEeCCCccc-CceeccCCCCHHHHHHHHHhcCCCC
Q 013976 351 GFPTILFFPAGNKSF-DPINVDVDRTVVALYKFLKKNASIP 390 (432)
Q Consensus 351 ~~P~i~~~~~g~~~~-~~~~y~g~~~~~~l~~fi~~~~~~~ 390 (432)
.||++.+|+.+.... .-..+.|.....++.+.+..-+...
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~ 156 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEE 156 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHH
Confidence 999999998774320 0124555555666666666555433
No 100
>PRK09381 trxA thioredoxin; Provisional
Probab=99.08 E-value=1e-09 Score=85.62 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=87.2
Q ss_pred ceeecCCCchhh-hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 152 LVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 152 ~v~~l~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.+.+++.+++.. +...+.++++.||++| +.|+.+.+.+++++.++.+++.|+.+|++. .+.+++.|++... |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt 78 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI--PT 78 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcC--CE
Confidence 466788888875 4556678888999999 999999999999999999999999999998 4578899999887 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHHHHHh
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFL 260 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~ 260 (432)
++++.++ ...+.+.|..+.+.|..|++..+
T Consensus 79 ~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 9998644 35667788899999999998865
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.06 E-value=1.1e-09 Score=84.77 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=84.5
Q ss_pred eeecCCCchhhhccCCC-cceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 153 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
+.+++++++........ +.++.||++| +.|+.+.+.+.++++.+. +++.|+.+|+..+ +..+++.|++.+. |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~--P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGF--P 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCc--C
Confidence 46788888888765444 6688899999 999999999999999997 5699999999883 3488999999888 9
Q ss_pred EEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 229 VLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 229 ~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
+++++..+....+.+.|..+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999987766677889999999999985
No 102
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.04 E-value=1.3e-09 Score=84.30 Aligned_cols=98 Identities=19% Similarity=0.314 Sum_probs=82.0
Q ss_pred eeecCCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 153 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 153 v~~l~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
|.+++.+++...+.. +.++++.||++| +.|+.+.+.+.++++.+++ ++.|+.+|++.. +++..+++.++ |
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~--P 75 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF--P 75 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC--C
Confidence 668899999886544 467788899999 9999999999999999987 599999999873 56788888666 9
Q ss_pred EEEEEeCCC-CceecCCCCCCHHHHHHHH
Q 013976 229 VLAYTGNDD-AKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 229 ~i~i~~~~~-~~~y~~~~~~~~~~i~~fi 256 (432)
+++++..+. .....+.|..+.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999987665 4566789999999999986
No 103
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.03 E-value=1e-09 Score=95.71 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=88.9
Q ss_pred CceeecCCCchhhhccC-----CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976 151 PLVTIFTRENAPSVFES-----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG 224 (432)
Q Consensus 151 p~v~~l~~~~~~~~~~~-----~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~ 224 (432)
..+.++++++|+..... +.++++.||++| ++|+.+.+.|+++|+++++.+.|+.+|++. ++.+++.|+|.+
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCCc
Confidence 35788999999887642 357889999999 999999999999999999999999999998 568999999999
Q ss_pred CCCcEEEEEeCCCCceec-CCCCCCHHHHHHHHHHHhc
Q 013976 225 EAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~-~~~~~~~~~i~~fi~~~~~ 261 (432)
+ |+++++.++. .+. ..|..+.++|.+|+...+.
T Consensus 107 ~--PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 Y--PTLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred C--CEEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHH
Confidence 8 9999998553 333 3678999999999998774
No 104
>PTZ00062 glutaredoxin; Provisional
Probab=99.01 E-value=5.2e-09 Score=89.71 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=104.0
Q ss_pred CchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976 159 ENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 159 ~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~ 236 (432)
+.+..+..++ ...+++|.++| ++|+.+.+.+.+++++|.+ +.|+.||.+ |+|... |+++++.++
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v--Ptfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY--GVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc--eEEEEEECC
Confidence 3444444433 34566666999 9999999999999999966 999999854 788887 999999766
Q ss_pred CCceecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcEEEEEe----CCCChhh
Q 013976 237 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY----APWCGHC 312 (432)
Q Consensus 237 ~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~----~~~c~~c 312 (432)
+. .-.+.| .+...|.+++..+...... . ....-.++++ .+.+++|+-- .|+|+.|
T Consensus 73 ~~-i~r~~G-~~~~~~~~~~~~~~~~~~~--------------~---~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C 131 (204)
T PTZ00062 73 QL-INSLEG-CNTSTLVSFIRGWAQKGSS--------------E---DTVEKIERLI--RNHKILLFMKGSKTFPFCRFS 131 (204)
T ss_pred EE-EeeeeC-CCHHHHHHHHHHHcCCCCH--------------H---HHHHHHHHHH--hcCCEEEEEccCCCCCCChhH
Confidence 42 223344 6789999999887652110 0 0112222322 3455555544 3799999
Q ss_pred hhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976 313 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN 362 (432)
Q Consensus 313 ~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~ 362 (432)
+++...|.+. ++.+..+|+..++. . .-+..++|.|. -+|+
T Consensus 132 ~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~ 177 (204)
T PTZ00062 132 NAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGE 177 (204)
T ss_pred HHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 9988777765 57777888876654 1 12445666654 4453
No 105
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.01 E-value=1.7e-09 Score=83.60 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=85.2
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
+.++++.++...+..+.++++.||++| +.|+.+.+.+.+++..+. +.+.++.+|+.... +..+++.+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~--Pt 78 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF--PT 78 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc--cE
Confidence 567788888888888888889999999 999999999999999997 66899999998744 5688999999888 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
++++.++. ....+.|..+.+.+.+|+
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 98887553 466788999999998885
No 106
>PRK10996 thioredoxin 2; Provisional
Probab=99.00 E-value=1.9e-09 Score=87.78 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=86.5
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 231 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~ 231 (432)
+..++.+++..+...++++++.||++| +.|+.+.+.|.+++.++.+.+.|+.+|+++ .+.+++.|+|.+. |+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~--Ptli 111 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI--PTIM 111 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc--CEEE
Confidence 445777788888777888899999999 999999999999999999899999999987 5689999999988 9999
Q ss_pred EEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 232 YTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
++.++ .....+.|..+.+.|.+|+++.
T Consensus 112 i~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 112 IFKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 88644 3445668889999999999875
No 107
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.99 E-value=1.2e-09 Score=78.77 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=58.3
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCC-CCHHHHH
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVALY 380 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~-~~~~~l~ 380 (432)
|.||++||++|+.+.|.+++++..+.. .+.+..+| +.....++++.++|++++ +|+. .+.|. .+.+.|.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEIK 72 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHHH
Confidence 778999999999999999999999976 68888888 222336799999999999 6654 47774 5667887
Q ss_pred HHH
Q 013976 381 KFL 383 (432)
Q Consensus 381 ~fi 383 (432)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 776
No 108
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.98 E-value=1.6e-09 Score=83.00 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=83.2
Q ss_pred ecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhc--cCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976 155 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 231 (432)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~--~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~ 231 (432)
+++..++...+..+.+++++|+.+| +.|+.+.+.+.+++..+ .+.+.|+.+|+.. +..+++.|++... |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGY--PTIK 76 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCC--CEEE
Confidence 4667778887777778888899999 89999999999999999 5789999999997 5689999999888 9999
Q ss_pred EEeCCCCceecCCCCCCHHHHHHHH
Q 013976 232 YTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 232 i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
++..++.....+.|..+.+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 9977655667788888999998874
No 109
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.98 E-value=1.7e-09 Score=82.57 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=72.4
Q ss_pred cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC-CcccccchhhhhCCCCCCCcEEEEEeCCCCceecC
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 243 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~-~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~ 243 (432)
..++++++.||++| ++|+.+.+.|+++|+.+.+ +.|+.+|++ . ++.+++.|++.++ |++++++.+ ....+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~---~~~l~~~~~V~~~--PT~~lf~~g--~~~~~ 87 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSI---KPSLLSRYGVVGF--PTILLFNST--PRVRY 87 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCC---CHHHHHhcCCeec--CEEEEEcCC--ceeEe
Confidence 35667889999999 9999999999999999986 888999987 4 5689999999988 999999765 56678
Q ss_pred CCCCCHHHHHHHH
Q 013976 244 DGELTLDKIKTFG 256 (432)
Q Consensus 244 ~~~~~~~~i~~fi 256 (432)
.|..+.+.|.+||
T Consensus 88 ~G~~~~~~l~~f~ 100 (100)
T cd02999 88 NGTRTLDSLAAFY 100 (100)
T ss_pred cCCCCHHHHHhhC
Confidence 9999999999985
No 110
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.98 E-value=3.3e-09 Score=80.65 Aligned_cols=84 Identities=15% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 246 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~ 246 (432)
+.++++.||++| ++|+.+.+.+.+++..+.+.+.|+.+|++. .+.+++.|++.+. |+++++..+ .....+.|.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~--Pt~~~~~~g-~~~~~~~g~ 85 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQAL--PTVYLFAAG-QPVDGFQGA 85 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCC--CEEEEEeCC-EEeeeecCC
Confidence 567889999999 999999999999999999889999999998 5689999999988 999999744 233457888
Q ss_pred CCHHHHHHHHH
Q 013976 247 LTLDKIKTFGE 257 (432)
Q Consensus 247 ~~~~~i~~fi~ 257 (432)
.+.+.|..|++
T Consensus 86 ~~~~~l~~~l~ 96 (96)
T cd02956 86 QPEEQLRQMLD 96 (96)
T ss_pred CCHHHHHHHhC
Confidence 99999999874
No 111
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.97 E-value=5.9e-09 Score=85.08 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=86.2
Q ss_pred CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976 159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 237 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~ 237 (432)
..+......+++++|.||++| ..|+.+.+.+.+++.++.+.+.|+.+|++... ...+++.|++.+. |++++++.++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i--Pt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI--PHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC--CEEEEECCCC
Confidence 344555667778899999999 99999999999999999888889999887643 4577899999988 9999996554
Q ss_pred CceecCCCCCCHHHHHHHHHHHhcCCcCc
Q 013976 238 AKKHILDGELTLDKIKTFGEDFLEGKLKP 266 (432)
Q Consensus 238 ~~~y~~~~~~~~~~i~~fi~~~~~g~l~~ 266 (432)
.....+.|..+.+.|.++++.++.|.-.|
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 45556788889999999999999876443
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.91 E-value=6.7e-09 Score=99.84 Aligned_cols=105 Identities=10% Similarity=0.146 Sum_probs=87.9
Q ss_pred CceeecCCCchhhhcc---CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchh-hhhCCCC
Q 013976 151 PLVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVS-EYFGITG 224 (432)
Q Consensus 151 p~v~~l~~~~~~~~~~---~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~-~~~~i~~ 224 (432)
+.|.+|++++|+.++. .+.+++|.||++| +.|+.+.+.|+++|.++++. +.|+.+|++... ..++ +.|+|..
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I~~ 428 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQLGS 428 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCCCc
Confidence 4688999999998864 6677889999999 99999999999999999875 899999998742 2344 6899998
Q ss_pred CCCcEEEEEeCCCCceecCC-CCCCHHHHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDF 259 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~~~-~~~~~~~i~~fi~~~ 259 (432)
+ |+++++.++......|. |.++.++|..||.-+
T Consensus 429 ~--PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 F--PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred c--ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 8 99999987765566786 589999999999753
No 113
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.91 E-value=5.6e-09 Score=81.54 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=74.2
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 244 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~ 244 (432)
.+++++|.||++| +.|+.+.+.+.++++++.+ ++.|+.+|++. .+.+++.+||.++ |+++++..++ ....+.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt~~i~~~g~-~~~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSV--PAIVGIINGQ-VTFYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccC--CEEEEEECCE-EEEEec
Confidence 4668899999999 9999999999999999986 59999999998 4588999999988 9999887553 444568
Q ss_pred CCCCHHHHHHHHHH
Q 013976 245 GELTLDKIKTFGED 258 (432)
Q Consensus 245 ~~~~~~~i~~fi~~ 258 (432)
|..+.+.|.+|+++
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 88999999999975
No 114
>PHA02125 thioredoxin-like protein
Probab=98.90 E-value=3.7e-09 Score=76.06 Aligned_cols=68 Identities=16% Similarity=0.330 Sum_probs=52.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC-CCCHH
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV 377 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~ 377 (432)
+++||++||++|+.+.|.|.+++ +.++.+|++.+.. .+++|.++||++ .|+.+. .+.| ..+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence 78999999999999999997662 4678889877766 689999999998 455443 5667 44556
Q ss_pred HHHHH
Q 013976 378 ALYKF 382 (432)
Q Consensus 378 ~l~~f 382 (432)
+|.+-
T Consensus 68 ~l~~~ 72 (75)
T PHA02125 68 ELKEK 72 (75)
T ss_pred HHHHH
Confidence 65543
No 115
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.88 E-value=8.6e-09 Score=103.39 Aligned_cols=98 Identities=28% Similarity=0.465 Sum_probs=77.0
Q ss_pred cccchhhhh---cCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCc
Q 013976 286 GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP 353 (432)
Q Consensus 286 ~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P 353 (432)
.+++++.+. ..+++++|+||++||.+|+.+.+.. .++.+.++ ++.++++|+++++. .++++.++|
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 456666553 2358999999999999999998764 56767775 48899999987643 479999999
Q ss_pred eEEEEe-CCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 354 TILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 354 ~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
++++|. +|+.+ +..++.|..+.+.+.+++++..
T Consensus 537 t~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 537 TILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEEECCCCCCc-ccccccCCCCHHHHHHHHHHhc
Confidence 999996 56653 2347889999999999998753
No 116
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1e-08 Score=90.41 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=89.4
Q ss_pred CceeecCCCchhhhc---cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 151 PLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 151 p~v~~l~~~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
+.|.++|..||...+ +...|+++.||++| ++|+++.+.+++++.+|+|++.++.|||+. .+.+...|||+.-
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsI- 98 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSI- 98 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcC-
Confidence 448889999998743 23347788899999 999999999999999999999999999999 6799999999998
Q ss_pred CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
|+++.+..++ ..--|.|....+.|.+|++.+++.
T Consensus 99 -PtV~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 -PTVYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred -CeEEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 9998886553 223467888888999999999864
No 117
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.86 E-value=2.3e-08 Score=76.41 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=80.4
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC---cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
+.+++..|+......+...++.|+++| ++|..+.+.+.++|++|.+.+.|+.+|+++ ++.++..|+|.+. |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sI--PT 86 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRT--PA 86 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcC--CE
Confidence 567899999988888778888899995 899999999999999999999999999998 5699999999998 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHH
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIK 253 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~ 253 (432)
++++.+++ ....+.|..+.+.+.
T Consensus 87 li~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCE-EEEEEeCccCHHHHh
Confidence 99997663 344556777766653
No 118
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.84 E-value=2.9e-08 Score=78.24 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=88.0
Q ss_pred EEEecccchhhhhcCCCcEEEEEeCC--CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 282 KIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 282 ~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
..++..+++.++ ......+|+|-.. .+..+....-++.+|++.|.+. ++.++++|++.+.. .+|+|.++||+++
T Consensus 20 ~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 20 TPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 446678888877 5556677777553 3678888999999999999742 59999999999988 7999999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHHHhcCCCCC
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 391 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 391 (432)
|++|+.+. ...|..+.+.+.+||+++++.+.
T Consensus 98 FkdGk~v~---~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 98 FTGGNYRG---VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EECCEEEE---EEeCcCCHHHHHHHHHHHhcCcC
Confidence 99999876 88899999999999999987654
No 119
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.84 E-value=1.8e-08 Score=77.31 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=78.3
Q ss_pred CCCchhhhccC-CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976 157 TRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 234 (432)
Q Consensus 157 ~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~ 234 (432)
+.+++...+.. +.+++++||++| ..|+.+.+.+.+++.++.+++.|+.+|++. .+.+++.||+... |+++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSI--PTLLLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcC--CEEEEEe
Confidence 34455554444 447788899999 999999999999999999889999999998 5588999999987 9999886
Q ss_pred CCCCceecCCCCCCHHHHHHHHHHH
Q 013976 235 NDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 235 ~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
.+. ....+.|..+.+.+.+|+++.
T Consensus 77 ~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCc-EeeeecCCCCHHHHHHHHHhh
Confidence 543 445567888999999999864
No 120
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=96.85 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=70.4
Q ss_pred hhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC----------------------------Cccc
Q 013976 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT----------------------------TNEH 344 (432)
Q Consensus 293 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~----------------------------~~~~ 344 (432)
.+..++++||.|||+||++|+.++|.+.++++.++.. ++.++.|... .+..
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 3456789999999999999999999999999998742 4666655431 1111
Q ss_pred --ccCCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976 345 --HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 345 --~~~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
..++|.++|+++++ ++|+.+. .+.|..+.+.|.++|+.-
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHHh
Confidence 36799999999776 7777665 788999999999999943
No 121
>PLN02309 5'-adenylylsulfate reductase
Probab=98.82 E-value=1.9e-08 Score=96.75 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=87.9
Q ss_pred CceeecCCCchhhhc---cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhh-hhCCCC
Q 013976 151 PLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITG 224 (432)
Q Consensus 151 p~v~~l~~~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~-~~~i~~ 224 (432)
+.|.+++.+++..++ ..++.++|.||++| ++|+.+.+.|.++|.++.+. +.|+.+|++.. ...++. .|+|..
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--~~~la~~~~~I~~ 422 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--QKEFAKQELQLGS 422 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc--chHHHHhhCCCce
Confidence 367888999988775 46778899999999 99999999999999999864 99999999832 456775 699998
Q ss_pred CCCcEEEEEeCCCCceecCCC-CCCHHHHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF 259 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~~~~-~~~~~~i~~fi~~~ 259 (432)
+ |+++++.++......|.| .++.++|..||...
T Consensus 423 ~--PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 F--PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred e--eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8 999999877666677874 79999999999864
No 122
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.80 E-value=3.5e-08 Score=76.18 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=76.4
Q ss_pred CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976 159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 234 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~ 234 (432)
+++... ..+..+++.||++| +.|+.+.+.|.+++..+++ .+.++.+|+.. .+.+++.+++.+. |+++++.
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~--Pt~~l~~ 80 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGY--PTIKLLK 80 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccc--cEEEEEc
Confidence 445554 34557889999999 9999999999999999953 48999999987 4588999999988 9999885
Q ss_pred CCCCceecCCCCCCHHHHHHHHHHH
Q 013976 235 NDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 235 ~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
++ ..+.+.|..+.+.|.+|+++.
T Consensus 81 ~~--~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GD--LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CC--CceeecCCCCHHHHHHHHHhh
Confidence 43 456678999999999999874
No 123
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.79 E-value=1.6e-07 Score=94.80 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=132.0
Q ss_pred cceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-CCceecCCCC
Q 013976 170 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGE 246 (432)
Q Consensus 170 ~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~-~~~~y~~~~~ 246 (432)
++.+.+|.+. +.|..+...+++++ .+.+++.+...|..+ ...+.+.|++... |++.+.+.+ ......|-|-
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~~--P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITKL--PTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCcC--CEEEEEeCCCcccceEEEec
Confidence 4455566554 47888888888988 667789888888766 3477899999866 999998533 2233566777
Q ss_pred CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCcE-EEEEeCCCChhhhhhHHHHHHHHHH
Q 013976 247 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKH 325 (432)
Q Consensus 247 ~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~~-lv~f~~~~c~~c~~~~~~~~~la~~ 325 (432)
..-.++..||..+++-.-. -..|.....+. +..-++++ +-.|.+++|.+|......+++++..
T Consensus 441 P~G~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 441 PSGHELNSFILALYNAAGP---------------GQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CccHhHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 7778888888888752111 11233333333 43445665 5567899999999998889888887
Q ss_pred hcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHH
Q 013976 326 LRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 326 ~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
.. ++..-.+|+..... .+|+|.++|++++ +|.. .+.|..+.+.|++||
T Consensus 505 ~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 505 NP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI 554 (555)
T ss_pred CC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence 54 48888889888877 6999999999987 4433 678988999999886
No 124
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.78 E-value=5.5e-09 Score=81.95 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=59.6
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHH---HhcCCCCEEEEEEeCCCcc---------------------c-ccCCC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE---------------------H-HRAKS 349 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~---~~~~~~~~~~~~id~~~~~---------------------~-~~~~i 349 (432)
.++++++++|+++||++|+.+.+.+..... .++. ++.++.+++.... . ..++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 356899999999999999999988886544 3333 5777777777542 1 46799
Q ss_pred CCCceEEEEe-CCCcccCceeccCCCCHHHHHHHH
Q 013976 350 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 350 ~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi 383 (432)
.++|+++++. +|+.+. .+.|..+.+.|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 9999999995 676553 688999999998875
No 125
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.75 E-value=6.6e-08 Score=79.44 Aligned_cols=86 Identities=13% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---------c----ccC---CCCCCceEEEEeC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------H----HRA---KSDGFPTILFFPA 360 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------~----~~~---~i~~~P~i~~~~~ 360 (432)
++..+|+||++||++|++..|.+.++++.++- .+..+.+|-.... . ..+ ++.++|+.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 45669999999999999999999999998842 3444444422100 1 123 6789999999954
Q ss_pred -CCcccCceeccCCCCHHHHHHHHHhc
Q 013976 361 -GNKSFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 361 -g~~~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
|..+ ...+.|..+.+.+.+.|.+.
T Consensus 128 ~G~~i--~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKA--YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEE--EEEeecccCHHHHHHHHHHh
Confidence 4432 12578899999998888764
No 126
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.74 E-value=4.3e-08 Score=75.68 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=77.3
Q ss_pred chhhhccCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEe
Q 013976 160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTG 234 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~ 234 (432)
.+.+...++++++|.|+++| +.|+.+.+.+ .+++..+.+++.++.+|++... ....+++.|++.+. |+++++.
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLFYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEEEC
Confidence 45556677888899999999 9999999887 6788888878999999987531 13578899999988 9999998
Q ss_pred C-CCCceecCCCCCCHHHHHHHHH
Q 013976 235 N-DDAKKHILDGELTLDKIKTFGE 257 (432)
Q Consensus 235 ~-~~~~~y~~~~~~~~~~i~~fi~ 257 (432)
. ++.....+.|.++.++|.+++.
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 6 4445677889999999988863
No 127
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.74 E-value=8.6e-08 Score=75.67 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=54.0
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHHH-H--HHHHHHhcCCCCEEEEEEeCCCccc--c--------cCCCCCCceEEEE-e
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPTILFF-P 359 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~~-~--~~la~~~~~~~~~~~~~id~~~~~~--~--------~~~i~~~P~i~~~-~ 359 (432)
...+++++|.|+++||..|+.|.+. | .+++..+.. ++.++.+|.++++. . .+++.++|+++++ +
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 4668999999999999999999763 3 256666655 69999999987654 1 2588999999999 5
Q ss_pred CCCcc
Q 013976 360 AGNKS 364 (432)
Q Consensus 360 ~g~~~ 364 (432)
+|+.+
T Consensus 90 ~G~~~ 94 (124)
T cd02955 90 DLKPF 94 (124)
T ss_pred CCCEE
Confidence 56654
No 128
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.74 E-value=3.4e-08 Score=89.43 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc---------cc--ccCCCCCCceEEEEeC-CCcc
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------EH--HRAKSDGFPTILFFPA-GNKS 364 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~---------~~--~~~~i~~~P~i~~~~~-g~~~ 364 (432)
++.+||+||++||++|+.+.|.+.+++..++- .+..+.+|.... .. .+++|.++|+++++.. |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 57899999999999999999999999999853 344455544321 11 5789999999999976 5544
Q ss_pred cCceeccCCCCHHHHHHHHHhcCC
Q 013976 365 FDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 365 ~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
.+ ...|..+.+.|.+.|...++
T Consensus 244 -~~-v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 -TP-IGFGVMSADELVDRILLAAH 265 (271)
T ss_pred -EE-EEeCCCCHHHHHHHHHHHhc
Confidence 11 34578899999999987765
No 129
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.73 E-value=1e-08 Score=78.90 Aligned_cols=66 Identities=6% Similarity=0.011 Sum_probs=59.3
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 237 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~ 237 (432)
.+.++++.|+++| ++|+.+.+.+.++|.++.+.+.|+.||+++ ++.+.+.|||++. |+++++.+++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~i--PTf~~fk~G~ 79 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDP--PTVMFFFRNK 79 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCC--CEEEEEECCE
Confidence 3456788899999 999999999999999999989999999998 6799999999998 9999997664
No 130
>PHA02278 thioredoxin-like protein
Probab=98.73 E-value=4.1e-08 Score=75.02 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=74.6
Q ss_pred CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCC
Q 013976 159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~ 236 (432)
+.+...+..+.++++.||++| ++|+.+.+.+.+++.++.+++.|+.+|++... ..+.+++.|+|.+. |+++++.++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~fk~G 82 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGYKDG 82 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEEECC
Confidence 345555667778899999999 99999999999999987777789999998631 02478899999998 999999766
Q ss_pred CCceecCCCCCCHHHHHHH
Q 013976 237 DAKKHILDGELTLDKIKTF 255 (432)
Q Consensus 237 ~~~~y~~~~~~~~~~i~~f 255 (432)
+ ..-...|..+.+.|.++
T Consensus 83 ~-~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 Q-LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred E-EEEEEeCCCCHHHHHhh
Confidence 4 33456787888887765
No 131
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.71 E-value=3.6e-08 Score=69.30 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=47.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
+++|+++||++|+.+.+.+++++.... ++.+..+|++++.. .++++.++|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 678999999999999999999987543 59999999987765 6899999999866
No 132
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.70 E-value=1.3e-07 Score=73.90 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=77.5
Q ss_pred ceeecCC-CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 152 LVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 152 ~v~~l~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.+..++. +.+...+.++.++++.||++| ++|+.+.+.+.++++++.+ +.|+.+|+++ .+.+++.|++... |+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~---~~~l~~~~~v~~v--Pt 78 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK---APFLVEKLNIKVL--PT 78 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc---CHHHHHHCCCccC--CE
Confidence 3445555 666666666778889999999 9999999999999999876 8999999998 5689999999988 99
Q ss_pred EEEEeCCCCc--e---ecC--CCCCCHHHHHHHH
Q 013976 230 LAYTGNDDAK--K---HIL--DGELTLDKIKTFG 256 (432)
Q Consensus 230 i~i~~~~~~~--~---y~~--~~~~~~~~i~~fi 256 (432)
++++.+++.. . ..+ .++++.+++..|+
T Consensus 79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999776521 1 112 1367888888876
No 133
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.69 E-value=7.5e-08 Score=73.97 Aligned_cols=94 Identities=9% Similarity=0.130 Sum_probs=76.4
Q ss_pred CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcccccchhhhhCCCCCCCcEEEEEe
Q 013976 157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 234 (432)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~ 234 (432)
+.+++..+...+.++++.||++| ++|+.+.+.+.+++..+.+. +.|+.+|++. ..+++.|+++.. |+++++.
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----~~~~~~~~v~~~--Pt~~~~~ 79 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----IDTLKRYRGKCE--PTFLFYK 79 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----HHHHHHcCCCcC--cEEEEEE
Confidence 55667777777888899999999 99999999999999999854 7899999883 367999999998 9998886
Q ss_pred CCCCceecCCCCCCHHHHHHHHHH
Q 013976 235 NDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 235 ~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
+++ ......| .+.+.+.++|+.
T Consensus 80 ~g~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCE-EEEEEec-CChHHHHHHHhh
Confidence 543 3344456 588899988875
No 134
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.68 E-value=1e-07 Score=76.41 Aligned_cols=102 Identities=10% Similarity=0.039 Sum_probs=76.9
Q ss_pred Cchhhhc--cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976 159 ENAPSVF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 159 ~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
+.+++.+ ..++++++-|+++| ++|+.+.+.+.++|+++.+.+.|+.||+++ ++++.+.|+|... +|++.++.+
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~-~t~~~ffk~ 87 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDP-CTVMFFFRN 87 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCC-CcEEEEEEC
Confidence 3444443 24456778899999 999999999999999999999999999998 6799999999854 456657766
Q ss_pred CCCceecCCC--------CCCHHHHHHHHHHHhcCCc
Q 013976 236 DDAKKHILDG--------ELTLDKIKTFGEDFLEGKL 264 (432)
Q Consensus 236 ~~~~~y~~~~--------~~~~~~i~~fi~~~~~g~l 264 (432)
++...-...| ..+.++|.+-++.++.|-.
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 5433334455 3677788888877776543
No 135
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.67 E-value=2.2e-07 Score=78.98 Aligned_cols=101 Identities=19% Similarity=0.309 Sum_probs=76.1
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------------
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------- 343 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---------------- 343 (432)
.+..++++.+.-.. -.+++++|.||++||..|+...+.+.+++..+.+. ++.++.++++...
T Consensus 45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 34555665554322 24578999999999999999999999999999863 5788888875331
Q ss_pred ------c--ccCCCCCCceEEEEe-CCCcccCceeccCCCCHHHHHHHHHh
Q 013976 344 ------H--HRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 344 ------~--~~~~i~~~P~i~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
. ..+++..+|+++++. +|..+. .+.|..+.+.+.+++.+
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~---~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVK---VITGEMTEEQLEEYLEK 170 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHH
Confidence 1 468999999999995 454432 67888999999998875
No 136
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.67 E-value=8.5e-08 Score=72.67 Aligned_cols=66 Identities=24% Similarity=0.498 Sum_probs=51.1
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAKS 349 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~i 349 (432)
+++++|+||++||.+|+...|.+.++.+.+++..++.++.|+++.... ..+++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 478999999999999999999999999999944478888888876421 12388
Q ss_pred CCCceEEEEeCCC
Q 013976 350 DGFPTILFFPAGN 362 (432)
Q Consensus 350 ~~~P~i~~~~~g~ 362 (432)
.++|+++++.++.
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 8999999985543
No 137
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.65 E-value=1.4e-07 Score=73.99 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=75.3
Q ss_pred CceeecCCCchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 151 PLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 151 p~v~~l~~~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
..+.+++.+++...+... .++++.||++| +.|+.+.+.++++|.++.+ +.|+.+|+++ . .+++.|++...
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~~- 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKVL- 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCcC-
Confidence 446777888887665443 67788899999 9999999999999999976 8999999987 4 78999999988
Q ss_pred CcEEEEEeCCCCceecCCC-------CCCHHHHHHHH
Q 013976 227 PKVLAYTGNDDAKKHILDG-------ELTLDKIKTFG 256 (432)
Q Consensus 227 ~P~i~i~~~~~~~~y~~~~-------~~~~~~i~~fi 256 (432)
|+++++.+++. ...+.| ..+.+.|.+|+
T Consensus 78 -Pt~~~f~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 78 -PTLLVYKNGEL-IDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred -CEEEEEECCEE-EEEEecHHHhCCCCCCHHHHHHHh
Confidence 99999976642 222222 35666666654
No 138
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.65 E-value=8.9e-08 Score=73.65 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=71.3
Q ss_pred CchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976 159 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 159 ~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
+++...+.. ++++++.||++| ++|+.+.+.+.++++++ +.+.|+.+|+++......+++.|+|.+. |+++++.+
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~~~ 80 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFYKD 80 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEEeC
Confidence 344444432 667888899999 99999999999999999 5699999998873212478899999998 99988854
Q ss_pred CCCceecCCCCCCHHHHHHHHHH
Q 013976 236 DDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 236 ~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
+ .....+.| .+.+.|.+-+..
T Consensus 81 G-~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 G-EKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred C-eEEEEEeC-CCHHHHHHHHHh
Confidence 4 34455667 566777666543
No 139
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.64 E-value=1.2e-07 Score=76.66 Aligned_cols=67 Identities=27% Similarity=0.504 Sum_probs=53.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcc--------------------------c-ccC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA 347 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~--------------------------~-~~~ 347 (432)
.++.+||.||++||++|+...|.+.+++..+++. .++.+..++++.+. . ..+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3689999999999999999999999999998764 35667666665432 1 247
Q ss_pred CCCCCceEEEEeCCC
Q 013976 348 KSDGFPTILFFPAGN 362 (432)
Q Consensus 348 ~i~~~P~i~~~~~g~ 362 (432)
++.++|+++++.++.
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 899999999996443
No 140
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=2.4e-07 Score=88.47 Aligned_cols=225 Identities=14% Similarity=0.143 Sum_probs=135.9
Q ss_pred ceeecCCCchhhhc-cCCCcceEEEEEeC-cchhhhHHHHHHHHHhcc---CceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 152 LVTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 152 ~v~~l~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
.|.+++.++|...+ .+.+..+|-||++| ++|..+.+.|+++|+... .-+.++.|||..+. +..+|+.|+|+.+
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~~- 117 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSGY- 117 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCCC-
Confidence 47889999998755 44446788899999 999999999999999876 45899999999987 9999999999999
Q ss_pred CcEEEEEeCCCCc-e--ecCCCCCCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchh---hhhcCCCcE
Q 013976 227 PKVLAYTGNDDAK-K--HILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDE---IVLDESKDV 300 (432)
Q Consensus 227 ~P~i~i~~~~~~~-~--y~~~~~~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~---~~~~~~~~~ 300 (432)
|++.++..+... . -.+.|.....++..++..-+...-- .+.-| .|...-......++.+ .+......+
T Consensus 118 -Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~----~~~~~-~WP~f~pl~~~~~~~~l~~~~~~~~~yv 191 (606)
T KOG1731|consen 118 -PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDA----QNRYP-SWPNFDPLKDTTTLEELDEGISTTANYV 191 (606)
T ss_pred -ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHh----hhcCC-CCCCCCCCCCcchHHHHhccccccccee
Confidence 999999766322 1 1234455566666666554432211 11111 2211111111122222 121122344
Q ss_pred EEEE-eCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE-eCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCCHHH
Q 013976 301 LLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM-DGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 378 (432)
Q Consensus 301 lv~f-~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i-d~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~ 378 (432)
.+.| ..+.- --|..+-..+... .+.+..+ |......-.+.++..|..++|++|... + .+..+.+.+.
T Consensus 192 Aiv~e~~~s~-------lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q--~-l~~~~~s~~~ 260 (606)
T KOG1731|consen 192 AIVFETEPSD-------LGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ--P-LWPSSSSRSA 260 (606)
T ss_pred EEEEecCCcc-------cHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc--c-cccccccHHH
Confidence 4444 22221 1244444444332 3333333 433444445999999999999999874 2 3334455556
Q ss_pred HHHHHHhcCCCCCcccC
Q 013976 379 LYKFLKKNASIPFKIQK 395 (432)
Q Consensus 379 l~~fi~~~~~~~~~~~~ 395 (432)
..+-|.+.++.+.....
T Consensus 261 y~~~I~~~lg~~~~a~~ 277 (606)
T KOG1731|consen 261 YVKKIDDLLGDKNEASG 277 (606)
T ss_pred HHHHHHHHhcCccccCC
Confidence 66666666655444433
No 141
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.63 E-value=1.3e-07 Score=70.21 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=58.9
Q ss_pred cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCH
Q 013976 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTV 376 (432)
Q Consensus 299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~ 376 (432)
..+..|+++||.+|..+.+.+.+++..+. ++.+..+|.++... .+++|.++|++++ +|.. .+.|..+.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~~~ 83 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRMTL 83 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCCCH
Confidence 35888999999999999999999998764 49999999888765 7999999999975 6654 45686666
Q ss_pred HHHH
Q 013976 377 VALY 380 (432)
Q Consensus 377 ~~l~ 380 (432)
+.++
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6654
No 142
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.62 E-value=1.3e-07 Score=76.29 Aligned_cols=68 Identities=28% Similarity=0.516 Sum_probs=53.3
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCcc-------------------------c-ccCC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE-------------------------H-HRAK 348 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~-------------------------~-~~~~ 348 (432)
.++++||+||++||.+|+...|.+.++...+++. .++.++.++++.+. . ..++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3578999999999999999999999999988753 35666666655331 1 3689
Q ss_pred CCCCceEEEEe-CCCc
Q 013976 349 SDGFPTILFFP-AGNK 363 (432)
Q Consensus 349 i~~~P~i~~~~-~g~~ 363 (432)
+.++|+++++. +|+.
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 99999999996 5543
No 143
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.62 E-value=2.2e-07 Score=72.83 Aligned_cols=99 Identities=14% Similarity=0.231 Sum_probs=75.3
Q ss_pred ceeecCCCchhhhccCC-CcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 152 LVTIFTRENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
.+.+++.+++...+.++ +++++.||++| +.|+.+.+.|.+++.++++ .+.|+.+||.... +..+++.|+++.+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence 36788899998876544 46788899999 9999999999999998863 5999999987543 5678999999988
Q ss_pred CcEEEEEeCCCCce---ecCCCC-CCHHHHH
Q 013976 227 PKVLAYTGNDDAKK---HILDGE-LTLDKIK 253 (432)
Q Consensus 227 ~P~i~i~~~~~~~~---y~~~~~-~~~~~i~ 253 (432)
|+++++..+.... -.++|. +..+++.
T Consensus 80 -Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 80 -PTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred -CEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 9999997665211 234443 5555553
No 144
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.61 E-value=1.5e-07 Score=77.06 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=68.0
Q ss_pred ceeecCCCchhhhccC--CCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCC---
Q 013976 152 LVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITG--- 224 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~--- 224 (432)
.+.+++++++...... +.++++.||++| ++|+.+.+.+.++|+++.+ ++.|+.||+++ ++.+++.|+|..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~~~~ 105 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVSTSPL 105 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCceecCC
Confidence 4677888888776533 346788899999 9999999999999999985 59999999998 568999999977
Q ss_pred -CCCcEEEEEeCCC
Q 013976 225 -EAPKVLAYTGNDD 237 (432)
Q Consensus 225 -~~~P~i~i~~~~~ 237 (432)
.+.|+++++..++
T Consensus 106 v~~~PT~ilf~~Gk 119 (152)
T cd02962 106 SKQLPTIILFQGGK 119 (152)
T ss_pred cCCCCEEEEEECCE
Confidence 1349999987554
No 145
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.59 E-value=2.4e-07 Score=79.50 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=65.0
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------------------------ccCCC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS 349 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------------------------~~~~i 349 (432)
..+++++|.||++||++|+...|.+.+++.. ++.++.++.+++.. ..+++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999988642 46666676543210 14688
Q ss_pred CCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 350 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 350 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
.++|+.+++ ++|.... .+.|..+.+.+.++|+....
T Consensus 141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHHH
Confidence 999987777 6776544 67888899988888887664
No 146
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.57 E-value=2.6e-07 Score=78.39 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=64.2
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------cc--ccCCC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKS 349 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~--~~~~i 349 (432)
..+++++|+||++||.+|+.+.|.+.+++.. ++.++.++.+.. .. ..+++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3568999999999999999999999888653 355555553211 01 35688
Q ss_pred CCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 350 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 350 ~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
.++|+.+++ ++|+.+. .+.|..+.+.+.+++.++.+
T Consensus 136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHhh
Confidence 899977666 6776554 67788999999999998763
No 147
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.56 E-value=3.1e-07 Score=69.83 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=72.4
Q ss_pred ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC
Q 013976 165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL 243 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~ 243 (432)
...+++++++|+++| +.|+.+.+.+.++++++.+++.++.+|+++ .+.+++.+++.+. |+++++.++ .....+
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~v--Pt~~i~~~g-~~v~~~ 83 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGT--PTVQFFKDK-ELVKEI 83 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeec--cEEEEEECC-eEEEEE
Confidence 345556677888899 999999999999999999889999999987 5588999999887 999999654 345567
Q ss_pred CCCCCHHHHHHHHH
Q 013976 244 DGELTLDKIKTFGE 257 (432)
Q Consensus 244 ~~~~~~~~i~~fi~ 257 (432)
.|..+.+.+.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 88888999888863
No 148
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.55 E-value=2.1e-07 Score=75.48 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC------CCEEEEEEeCCCccc-------------------------
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH------------------------- 344 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~~~------------------------- 344 (432)
.+++++|.|||+||++|+..+|.+.++.+.+++. .++.++.|+.+.+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999998877642 258888888775321
Q ss_pred --ccCCCCCCceEEEEe-CCCc
Q 013976 345 --HRAKSDGFPTILFFP-AGNK 363 (432)
Q Consensus 345 --~~~~i~~~P~i~~~~-~g~~ 363 (432)
..|++.++|+.+++. +|+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE
Confidence 135788999999995 4443
No 149
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.55 E-value=4.4e-07 Score=70.96 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-CceecC
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHIL 243 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~~~y~~ 243 (432)
..+...++.|+++| +.|+.+.+.+++++..+ +++.|..+|.+. .+.++..|++... |+++++.++. .....+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~v~~v--Pt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYGVERV--PTTIFLQDGGKDGGIRY 93 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcCCCcC--CEEEEEeCCeecceEEE
Confidence 44445556667889 99999999999999987 669999999987 5689999999998 9999987643 223357
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 013976 244 DGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 244 ~~~~~~~~i~~fi~~~~~ 261 (432)
.|..+...+.+||+.+++
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 788888999999998865
No 150
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.55 E-value=3e-07 Score=72.07 Aligned_cols=67 Identities=25% Similarity=0.522 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------------cc--ccCCCCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSDG 351 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------------~~--~~~~i~~ 351 (432)
+++++|+||++||+.|+...+.+.++...+.. .++.++.++++.+ .. ..+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 68999999999999999999999999999973 3699999998874 11 4678999
Q ss_pred CceEEEEe-CCCcc
Q 013976 352 FPTILFFP-AGNKS 364 (432)
Q Consensus 352 ~P~i~~~~-~g~~~ 364 (432)
+|+++++. +|..+
T Consensus 98 ~P~~~l~d~~g~v~ 111 (116)
T cd02966 98 LPTTFLIDRDGRIR 111 (116)
T ss_pred cceEEEECCCCcEE
Confidence 99999994 55443
No 151
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.55 E-value=2.8e-07 Score=70.12 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=70.3
Q ss_pred CchhhhccCC--CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976 159 ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 159 ~~~~~~~~~~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
+++...+... +++++.||++| ..|+.+.+.+.+++.++...+.|+.+|+.. .+.+++.|++... |+++++..
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~--Pt~~~~~~ 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAV--PTFVFFRN 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccc--cEEEEEEC
Confidence 3445554444 67788899999 999999999999999987789999999987 5688999999887 99999865
Q ss_pred CCCceecCCCCCCHHHHHHHH
Q 013976 236 DDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 236 ~~~~~y~~~~~~~~~~i~~fi 256 (432)
+. ....+.| .+.+.|.+.|
T Consensus 78 g~-~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GT-IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CE-EEEEEeC-CCHHHHHHhh
Confidence 43 2333444 5677776655
No 152
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.53 E-value=2.6e-07 Score=74.16 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=55.8
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----------------------ccc--ccCCCCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------NEH--HRAKSDG 351 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----------------------~~~--~~~~i~~ 351 (432)
+++++|.||++||.+|+...|.+.++++.+. +.++.++.+. +.. ..+++.+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 6789999999999999999999999987752 5555555321 111 3579999
Q ss_pred CceEEEE-eCCCcccCceeccCCCCHHHH
Q 013976 352 FPTILFF-PAGNKSFDPINVDVDRTVVAL 379 (432)
Q Consensus 352 ~P~i~~~-~~g~~~~~~~~y~g~~~~~~l 379 (432)
+|+.+++ ++|..+. .+.|..+.+.|
T Consensus 101 ~P~~~~ld~~G~v~~---~~~G~~~~~~~ 126 (127)
T cd03010 101 VPETFLIDGDGIIRY---KHVGPLTPEVW 126 (127)
T ss_pred CCeEEEECCCceEEE---EEeccCChHhc
Confidence 9966666 6776544 67787776643
No 153
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.7e-07 Score=78.21 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCceEEE-ecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCC---
Q 013976 278 DGDVKIV-VGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--- 350 (432)
Q Consensus 278 ~~~v~~l-~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~--- 350 (432)
.+.++.+ +++.+++.+..+ .+.|+|.|++.|...|..+.|.|.+|+.+|..+ .++|+++|+...++ .+|.|+
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCc
Confidence 3457888 556666666333 367999999999999999999999999999874 89999999998887 566554
Q ss_pred ---CCceEEEEeCCCccc
Q 013976 351 ---GFPTILFFPAGNKSF 365 (432)
Q Consensus 351 ---~~P~i~~~~~g~~~~ 365 (432)
..||+++|..|+.+.
T Consensus 202 ~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVS 219 (265)
T ss_pred ccccCCeEEEEccchhhh
Confidence 789999999998764
No 154
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.51 E-value=4.3e-07 Score=72.40 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=62.4
Q ss_pred EecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---------------------Cc
Q 013976 284 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------TN 342 (432)
Q Consensus 284 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------------------~~ 342 (432)
+.++.+..... .+++++|+||++||++|..+.|.+.+++..+. +..+.+|-. .+
T Consensus 8 ~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 8 LDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred CCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 44444444433 34899999999999999999999999987742 222222211 11
Q ss_pred c-c-ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHH
Q 013976 343 E-H-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 381 (432)
Q Consensus 343 ~-~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~ 381 (432)
. . ..+++.++|+++++.+|+... .+.|..+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence 1 1 478999999999997666433 6778888888765
No 155
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.49 E-value=1e-06 Score=67.41 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=70.0
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC--
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-- 243 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~-- 243 (432)
.++.+++-|+++| ++|+.+.+.+.++|.++.+.+.|..||.++ .+++.+.|+|... |+++++.+++.-...+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~am--Ptfvffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYI--PSTIFFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeC--cEEEEEECCcEEEEecCC
Confidence 4566778899999 999999999999999998889999999998 6799999999877 9998886554222222
Q ss_pred ------CCC-CCHHHHHHHHHHHhcC
Q 013976 244 ------DGE-LTLDKIKTFGEDFLEG 262 (432)
Q Consensus 244 ------~~~-~~~~~i~~fi~~~~~g 262 (432)
++- -+.+.+..-++-...|
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHcC
Confidence 222 3457777777665543
No 156
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.49 E-value=6.3e-08 Score=81.98 Aligned_cols=100 Identities=23% Similarity=0.398 Sum_probs=89.9
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
.++.++.+|+.+.+ ...+++.|++|||..|+...+.|...|.--.+. .+.++.+|++.|+. -+|-+...|+|+=
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEEE
Confidence 58889999999976 678999999999999999999999998776664 89999999999999 4899999999999
Q ss_pred EeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 358 FPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 358 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
.+.|.-- +|.|.++..++++|+...-
T Consensus 101 vkDGeFr----rysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 101 VKDGEFR----RYSGARDKNDFISFEEHRE 126 (248)
T ss_pred eeccccc----cccCcccchhHHHHHHhhh
Confidence 9999764 8999999999999998664
No 157
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.47 E-value=7.9e-07 Score=70.13 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=48.1
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEE-eCCCcc
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF-PAGNKS 364 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~-~~g~~~ 364 (432)
...+++++|+|++.||.+|+.+...+. ++.+.+++ ++..+.++.+..+. .......+|+++|+ ++|..+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~vi 93 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECCCCCCc
Confidence 456799999999999999999987643 34444544 57777777654322 11233689999999 556554
No 158
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.46 E-value=1e-06 Score=65.86 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=73.1
Q ss_pred chhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCC
Q 013976 160 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 238 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~ 238 (432)
++...+..+.+.+++|+++| ..|+.+.+.+.+++.. .+.+.|+.+|+.. ...+++.+++... |+++++..++
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~v~~~--P~~~~~~~g~- 74 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE---NPELAEEYGVRSI--PTFLFFKNGK- 74 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC---ChhHHHhcCcccc--cEEEEEECCE-
Confidence 34444555567788888999 9999999999999999 6669999999997 4588999999887 9999887654
Q ss_pred ceecCCCCCCHHHHHHHHH
Q 013976 239 KKHILDGELTLDKIKTFGE 257 (432)
Q Consensus 239 ~~y~~~~~~~~~~i~~fi~ 257 (432)
....+.|..+.+.|.+|++
T Consensus 75 ~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 75 EVDRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEEEecCCCHHHHHHHhC
Confidence 4455677778889988873
No 159
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.46 E-value=5.8e-07 Score=96.54 Aligned_cols=89 Identities=15% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---Cc---------------------cc-----cc
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---TN---------------------EH-----HR 346 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---~~---------------------~~-----~~ 346 (432)
.++++||.|||+||++|+...|.|+++++.|++. ++.++.+.+. .. +. ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999863 5777766421 10 00 36
Q ss_pred CCCCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 347 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 347 ~~i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
+++.++|+++++ ++|+.+. .+.|....+.|.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence 799999999999 7787654 68898899999999988764
No 160
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.46 E-value=1.1e-06 Score=68.98 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHH-HH--HHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEEe--CCCcc
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP--AGNKS 364 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~~--~g~~~ 364 (432)
...+++++|+|+++||..|+.+.. +| .++.+.++. ++.+..+|+...+. ..+++.++|+++++. +|..+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 345689999999999999999865 34 235555655 68888899876444 468999999999995 45554
Q ss_pred cCceeccCCCCHHHHHHHHHhcC
Q 013976 365 FDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 365 ~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
. .+.|..+.+.+.+.|++..
T Consensus 92 ~---~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 K---VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred E---EEcCCCCHHHHHHHHHHHH
Confidence 3 7889999999999988754
No 161
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.42 E-value=1.2e-06 Score=78.57 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=81.4
Q ss_pred CCceEEEec-ccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCc
Q 013976 278 DGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP 353 (432)
Q Consensus 278 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P 353 (432)
-+.|..|+. ..|-+.+.... ..|||.||.+.+..|..+...|..||..|.. ++|.+|.++.... +.|.+..+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCC
Confidence 467888864 78888774433 4689999999999999999999999999986 9999999877644 789999999
Q ss_pred eEEEEeCCCcccCceecc---C-CCCHHHHHHHHHhcCCCCCc
Q 013976 354 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK 392 (432)
Q Consensus 354 ~i~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~~ 392 (432)
+|++|++|..+.+.+.+. | ..+...|..||.++.-.+-.
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 999999997664444433 2 67789999999999876554
No 162
>PTZ00051 thioredoxin; Provisional
Probab=98.42 E-value=7.9e-07 Score=67.72 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976 157 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 157 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
+.+.+..+...+.++++.||++| +.|+.+.+.+.+++.++.+ +.|+.+|++. ...+++.|++.+. |+++++.+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~ 80 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDE---LSEVAEKENITSM--PTFKVFKN 80 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcc---hHHHHHHCCCcee--eEEEEEeC
Confidence 34566667777778889999999 9999999999999999876 8999999987 5688999999888 99988865
Q ss_pred CCCceecCCCCCCHHHHH
Q 013976 236 DDAKKHILDGELTLDKIK 253 (432)
Q Consensus 236 ~~~~~y~~~~~~~~~~i~ 253 (432)
++ ....+.| ...+.|.
T Consensus 81 g~-~~~~~~G-~~~~~~~ 96 (98)
T PTZ00051 81 GS-VVDTLLG-ANDEALK 96 (98)
T ss_pred Ce-EEEEEeC-CCHHHhh
Confidence 43 3344555 3445443
No 163
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=66.72 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 246 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~ 246 (432)
++..++.||++| ++|+.+.|.+.++|.+|.+ +.|+.+|+++ ...+++.++++.. |+++++.+++ ..-.+-|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~~--PTf~f~k~g~-~~~~~vG- 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKAM--PTFVFYKGGE-EVDEVVG- 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceEe--eEEEEEECCE-EEEEEec-
Confidence 356677799999 9999999999999999999 9999999998 5689999999998 9999996664 2223333
Q ss_pred CCHHHHHHHHHH
Q 013976 247 LTLDKIKTFGED 258 (432)
Q Consensus 247 ~~~~~i~~fi~~ 258 (432)
.+.+.+.+.+..
T Consensus 93 a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 ANKAELEKKIAK 104 (106)
T ss_pred CCHHHHHHHHHh
Confidence 455566666654
No 164
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=98.37 E-value=2.4e-06 Score=62.64 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=64.3
Q ss_pred ceeeCCHHHHHHHhhcCCeEEEEEecCCCcchHHHHHHHh-ccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecC-C
Q 013976 48 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE-T 125 (432)
Q Consensus 48 ~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~-~ 125 (432)
|.++.+.++|.. +...+-.|||||.+.+.++++.|..+| .+++++.|++..++.. ....... +.+++||+. -
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~~----~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPPG----DNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCCC----CCeEEECCCCC
Confidence 457888899987 777889999999999999999999999 7899999999886544 2222222 457778876 3
Q ss_pred CceecccCCCCC
Q 013976 126 EKISYFADGKFD 137 (432)
Q Consensus 126 ~~~~~y~~g~~~ 137 (432)
.....| .|.++
T Consensus 75 ~~~~~y-~G~~t 85 (91)
T cd03070 75 APDMVY-LGSLT 85 (91)
T ss_pred CCceEE-ccCCC
Confidence 455788 88874
No 165
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.37 E-value=2.4e-06 Score=72.16 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=78.5
Q ss_pred CCceeecCC-CchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976 150 LPLVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG 224 (432)
Q Consensus 150 ~p~v~~l~~-~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~ 224 (432)
+..+.+++. ++|...+... .+++|.||++| ++|+.+.+.|.++|.+|.. +.|+.||++. . .++..|++..
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~---~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASA---T-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccc---h-hhHHhCCCCC
Confidence 456777777 7777665432 26778899999 9999999999999999975 9999999986 3 6889999988
Q ss_pred CCCcEEEEEeCCCCc--eecC----CCCCCHHHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDAK--KHIL----DGELTLDKIKTFGED 258 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~--~y~~----~~~~~~~~i~~fi~~ 258 (432)
. |+++++.++... ...+ ..+++.+.|..|+..
T Consensus 136 v--PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 L--PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred C--CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 7 999999766421 1111 126888999988865
No 166
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.35 E-value=3.8e-07 Score=66.88 Aligned_cols=64 Identities=27% Similarity=0.572 Sum_probs=49.9
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEe
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP 359 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~ 359 (432)
...+++++|+|+++||..|+.+...+ .++...+.+ ++.++.+|.+..+. ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 35679999999999999999998776 445554655 69999999977665 233336799999985
No 167
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.35 E-value=2e-06 Score=68.82 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=76.3
Q ss_pred hccCC-CcceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcc----------cccchhhhhCCCCCCCc
Q 013976 164 VFESP-IKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED----------VGKPVSEYFGITGEAPK 228 (432)
Q Consensus 164 ~~~~~-~~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~----------~~~~l~~~~~i~~~~~P 228 (432)
...++ ++++|.|+++| +.|+.+.+.+. .++..+.+.+.++.+|.+... -...++..|++... |
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~--P 86 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT--P 86 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc--c
Confidence 34566 78889999999 89999998774 677777777889999887531 02467899999887 9
Q ss_pred EEEEEeCC-CCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 229 VLAYTGND-DAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 229 ~i~i~~~~-~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
++++++.+ +.......|..+.+.+.++++.++++
T Consensus 87 t~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 87 TVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999876 44455678889999999999998765
No 168
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.35 E-value=2.5e-06 Score=71.43 Aligned_cols=83 Identities=10% Similarity=0.132 Sum_probs=62.3
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc----------c-----ccCCC--CCCceEEEE-eCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----------H-----HRAKS--DGFPTILFF-PAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~----------~-----~~~~i--~~~P~i~~~-~~g~ 362 (432)
+|.||++||.+|++..|.+.+++++++ +.+.-|+.+... . ..+++ .++|+.+++ ++|.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999984 444444544331 0 24563 699999999 5554
Q ss_pred cccCceeccCCCCHHHHHHHHHhcCCC
Q 013976 363 KSFDPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 363 ~~~~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
.. ...+.|..+.+.|.+.|.+.+..
T Consensus 149 i~--~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EA--LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EE--EEEEECCCCHHHHHHHHHHHHhh
Confidence 42 12588999999999999888765
No 169
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.33 E-value=1.5e-06 Score=68.27 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 337 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i 337 (432)
++++++|.||++||++|+...|.+.+++..+.+ ++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 368999999999999999999999999988865 4555444
No 170
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.33 E-value=1.4e-06 Score=84.48 Aligned_cols=103 Identities=25% Similarity=0.392 Sum_probs=77.3
Q ss_pred EEEecc-cchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHH-HHHHhcCCCCEEEEEEeCCCccc------ccCCCCCC
Q 013976 282 KIVVGN-NFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNK-LAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF 352 (432)
Q Consensus 282 ~~l~~~-~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~-la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~ 352 (432)
+.++.. ..++.+.+.. ++++|+|||+||-.||.+.+..-. .....+ ..++...+.|.+.|+. .++++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445554 6677664433 599999999999999999877542 222222 2369999999999887 47899999
Q ss_pred ceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 353 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 353 P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
|++++|+.+.. .+....|..+.+.+.+++++..
T Consensus 536 P~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGS--EPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCC--cCcCCcceecHHHHHHHHHHhc
Confidence 99999975444 2335889999999999998753
No 171
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.28 E-value=3.3e-06 Score=66.86 Aligned_cols=102 Identities=11% Similarity=0.123 Sum_probs=73.7
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------cccchhhhhCCC
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFGIT 223 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------~~~~l~~~~~i~ 223 (432)
+.+++.+.+...+.++...+++|+++| ++|+.+.|.|.+++++ .++.|.++|.+... -...+.+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 456777778777888878889999999 9999999999999998 44667788877421 012445666654
Q ss_pred C--CCCcEEEEEeCCCCceecCCC-CCCHHHHHHHHH
Q 013976 224 G--EAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGE 257 (432)
Q Consensus 224 ~--~~~P~i~i~~~~~~~~y~~~~-~~~~~~i~~fi~ 257 (432)
. ...|+++++.++... -.+.| ..+.+.|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQV-SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence 2 235999999776532 23445 567999999875
No 172
>smart00594 UAS UAS domain.
Probab=98.25 E-value=5.6e-06 Score=65.69 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=68.3
Q ss_pred ccchhhh---hcCCCcEEEEEeCCCChhhhhhHHH-HH--HHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEE
Q 013976 287 NNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPT-YN--KLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL 356 (432)
Q Consensus 287 ~~~~~~~---~~~~~~~lv~f~~~~c~~c~~~~~~-~~--~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~ 356 (432)
.+|++.+ ....|.++|+|+++||..|..+... |. ++...++. ++.+..+|++..+. ..+++.++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 4555544 3446799999999999999988654 22 24445554 68888899887776 478999999999
Q ss_pred EE-eCCCcc--cCceeccCCCCHHHHHHHH
Q 013976 357 FF-PAGNKS--FDPINVDVDRTVVALYKFL 383 (432)
Q Consensus 357 ~~-~~g~~~--~~~~~y~g~~~~~~l~~fi 383 (432)
++ ++|... .-.-...|..+.+.++.+|
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99 444210 0012577999999998876
No 173
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.25 E-value=3.5e-06 Score=61.36 Aligned_cols=97 Identities=15% Similarity=0.301 Sum_probs=71.6
Q ss_pred CchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC--CCcEEEEEeC
Q 013976 159 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE--APKVLAYTGN 235 (432)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~--~~P~i~i~~~ 235 (432)
..|.+++..... ++++|... .+-.+.+..+.++|...+|+-++++|||.+.+ .+.+|+.+.+.+. +.|.. +.+.
T Consensus 10 KdfKKLLRTr~N-VLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~-LkHY 86 (112)
T cd03067 10 KDFKKLLRTRNN-VLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVE-LKHY 86 (112)
T ss_pred HHHHHHHhhcCc-EEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcch-hhcc
Confidence 445667776644 55555555 77788889999999999999999999999866 8899999999833 22444 3333
Q ss_pred CCC-ceecCCCCCCHHHHHHHHHH
Q 013976 236 DDA-KKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 236 ~~~-~~y~~~~~~~~~~i~~fi~~ 258 (432)
.++ -+-.|+...+..+|..|+.+
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 333 23346778999999999976
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.24 E-value=4.8e-05 Score=76.39 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=122.7
Q ss_pred cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976 170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 248 (432)
Q Consensus 170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~ 248 (432)
++.+.+|.+. +.|..+...+++++.-- +++.+...+. . . ..|++.+...+......|.|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---------~-----~--~~p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---------D-----V--RKPSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---------C-----C--CCCEEEEEcCCccceEEEEecCc
Confidence 4556666665 67888888888887764 4566543221 0 1 24999887644444456778778
Q ss_pred HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976 249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 327 (432)
Q Consensus 249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~ 327 (432)
-.++..||..+++-. .+ -..|..... +.+..-+++ .+..|++++|.+|......+++++..-.
T Consensus 83 g~Ef~s~i~~i~~~~-------~~--------~~~l~~~~~-~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~ 146 (517)
T PRK15317 83 GHEFTSLVLALLQVG-------GH--------PPKLDQEVI-EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP 146 (517)
T ss_pred cHHHHHHHHHHHHhc-------CC--------CCCCCHHHH-HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC
Confidence 888899998886511 11 112332332 234333444 5889999999999999999999987533
Q ss_pred CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 328 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 328 ~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
++.+-.+|...++. .++++.++|++++ +|.. .+.|..+.+.+.+.+.+...
T Consensus 147 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 147 ---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred ---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhcccc
Confidence 68999999999888 7999999999976 5543 68899999999998887543
No 175
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.24 E-value=8.7e-06 Score=59.58 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=65.6
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 250 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~ 250 (432)
+.+|+++| +.|+.+.+.+.+++..+...+.+..+|.++ .+.+++.+|+.+. |++++ ++ . ..+.|..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~v--Pt~~~--~g--~-~~~~G~~~~~ 72 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAV--PAIVI--NG--D-VEFIGAPTKE 72 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccC--CEEEE--CC--E-EEEecCCCHH
Confidence 56788899 999999999999999998889999999987 5588899999988 99975 22 2 3567888999
Q ss_pred HHHHHHHHH
Q 013976 251 KIKTFGEDF 259 (432)
Q Consensus 251 ~i~~fi~~~ 259 (432)
.+.++++..
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999988764
No 176
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.16 E-value=1.4e-05 Score=70.55 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=66.5
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------c---c-----cc----C------C---
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E---H-----HR----A------K--- 348 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~---~-----~~----~------~--- 348 (432)
.++.+||.||++||..|....|.+.++.+.+++. ++.++-|+++.. + . .+ | +
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3589999999999999999999999999999864 688888886421 0 0 01 1 1
Q ss_pred ---------------------CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 349 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 349 ---------------------i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
+...|+.+++ ++|+.+. .|.|..+.+.|.+.|++.++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHhc
Confidence 1224777777 6666654 78898899999999988763
No 177
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.16 E-value=4.3e-05 Score=58.40 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=75.3
Q ss_pred ceEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHH-HHhcCCCCEEEEEEeCCCccc-------ccCCC--
Q 013976 280 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH-------HRAKS-- 349 (432)
Q Consensus 280 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la-~~~~~~~~~~~~~id~~~~~~-------~~~~i-- 349 (432)
.+..|+.-+|+..+ ...+.+||-|=... +.=.-...|.++| +.....+++.+|.+-+..... ++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35678999999977 55689999995422 2222356788899 555555689999998876443 46777
Q ss_pred CCCceEEEEeCCCcccCceec--cCCCCHHHHHHHHHhcCCC
Q 013976 350 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 350 ~~~P~i~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~~ 389 (432)
..+|.+++|..|.. .|+.| .|..++++|..|+++++..
T Consensus 82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCe
Confidence 57999999995444 89999 8899999999999999764
No 178
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.16 E-value=1.1e-05 Score=64.60 Aligned_cols=67 Identities=19% Similarity=0.407 Sum_probs=51.7
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC-----cc-------------------c-----cc
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NE-------------------H-----HR 346 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~-----~~-------------------~-----~~ 346 (432)
.+++++|+||++||..|....|.++++.+.+++. ++.++.|+... .. . ..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 4689999999999999999999999999999863 68887776521 00 0 12
Q ss_pred CCCCCCceEEEE-eCCCc
Q 013976 347 AKSDGFPTILFF-PAGNK 363 (432)
Q Consensus 347 ~~i~~~P~i~~~-~~g~~ 363 (432)
+++..+|+.+++ ++|+.
T Consensus 101 ~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 101 YGNQYWPALYLIDPTGNV 118 (126)
T ss_pred hCCCcCCeEEEECCCCcE
Confidence 578889999999 45544
No 179
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.13 E-value=2.8e-05 Score=61.43 Aligned_cols=102 Identities=8% Similarity=0.164 Sum_probs=79.1
Q ss_pred ecCCCchhhhccCCCcceEEEEEeC----cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 155 IFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.++..+++.+...+ ...++|+..+ +......-.+.+++++|.+ ++.|+.||++. ++.++..|||.+. |+
T Consensus 21 ~~~~~~~~~~~~~~-~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~si--PT 94 (132)
T PRK11509 21 PVSESRLDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF--PA 94 (132)
T ss_pred ccccccHHHHHhCC-CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccC--CE
Confidence 34557777776554 4566666544 3456677789999999984 59999999998 6699999999998 99
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCC
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK 263 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~ 263 (432)
++++.+++ ..-...|..+.+.+.+||+.++...
T Consensus 95 Ll~FkdGk-~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 95 TLVFTGGN-YRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEEEECCE-EEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99997764 3334578899999999999998743
No 180
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.13 E-value=3e-05 Score=62.01 Aligned_cols=106 Identities=17% Similarity=0.305 Sum_probs=80.2
Q ss_pred CCceeeCCHHHHHHHhhcCCeEEEEEecCCC-------cchHHHHHHHh-ccCCC-ceEEEeC---cHHHHhHcCCCCCC
Q 013976 46 PGIYNITTLDEAERVLTSETKVVLGYLNSLV-------GSESEVLADAS-RLEDD-VNFYQTT---NPDVAKIFHLDSKV 113 (432)
Q Consensus 46 ~~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~-------~~~~~~f~~~a-~~~~~-~~F~~~~---~~~~~~~~~~~~~~ 113 (432)
|-+.+|++.+.+++.=..+..++|+|+++.. ......|.++| ++++. +.|+.+. ...+.+.+|+...
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~- 80 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF- 80 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc-
Confidence 4577899988888777778899999998531 12455688888 78888 8999854 2348999998643
Q ss_pred CCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCce
Q 013976 114 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLV 153 (432)
Q Consensus 114 ~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v 153 (432)
++|++++++..+.++..+ .|+++.++|..|+.......+
T Consensus 81 ~~P~v~i~~~~~~KY~~~-~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATL-KGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccc-cCccCHHHHHHHHHHHHcCCc
Confidence 579999999854444346 899999999999998766544
No 181
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.11 E-value=1.9e-05 Score=67.61 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=76.9
Q ss_pred cCCCceeecCCCchhhhc-cCC--CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCC
Q 013976 148 NKLPLVTIFTRENAPSVF-ESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 223 (432)
Q Consensus 148 ~~~p~v~~l~~~~~~~~~-~~~--~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~ 223 (432)
..+..+.+++.++|...+ ..+ ..++|.||++| +.|+.+.+.|.++|.+|.. +.|+.+|++. .+..|++.
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence 345678888888777533 332 35678899999 9999999999999999975 9999999874 25788998
Q ss_pred CCCCcEEEEEeCCCCc--e---ecCCC-CCCHHHHHHHHHH
Q 013976 224 GEAPKVLAYTGNDDAK--K---HILDG-ELTLDKIKTFGED 258 (432)
Q Consensus 224 ~~~~P~i~i~~~~~~~--~---y~~~~-~~~~~~i~~fi~~ 258 (432)
.. |+++++.++... . ..+.| .++.+.|..++.+
T Consensus 152 ~l--PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NL--PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CC--CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 77 999999876521 1 11223 6788888888765
No 182
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.05 E-value=1.3e-05 Score=57.88 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=48.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc-----CCCCCCceEEEEeCCCcccCceeccCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNKSFDPINVDVD 373 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~-----~~i~~~P~i~~~~~g~~~~~~~~y~g~ 373 (432)
+++|+++||++|+.+++.+.++ .+.+..+|++.+.. .. +++.++|++ ++.+|..+. .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~-------~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT-------N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec-------C
Confidence 6789999999999999988776 34555688776654 22 378899997 566665431 4
Q ss_pred CCHHHHHHHHH
Q 013976 374 RTVVALYKFLK 384 (432)
Q Consensus 374 ~~~~~l~~fi~ 384 (432)
.+...+.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 55566666554
No 183
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.04 E-value=0.00019 Score=72.11 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=120.6
Q ss_pred cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976 170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 248 (432)
Q Consensus 170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~ 248 (432)
++.+.+|.+. +.|+.+...+++++.-- +++.+...+... ...|++.+...+......|-|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~---------------~~~p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT---------------LRKPSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc---------------CCCCeEEEecCCcccceEEEecCC
Confidence 4556566555 67888887777777654 557664433211 124999887544333456677777
Q ss_pred HHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976 249 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLR 327 (432)
Q Consensus 249 ~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~ 327 (432)
-.++..||..+++-.-. -..|.....+. +..-+++ .+-.|.++.|.+|......+++++....
T Consensus 84 g~Ef~s~i~~i~~~~~~---------------~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 84 GHEFTSLVLAILQVGGH---------------GPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred cHHHHHHHHHHHHhcCC---------------CCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 78888899887752111 12233333333 3333444 5889999999999998888888877754
Q ss_pred CCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcC
Q 013976 328 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 328 ~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
++..-.+|...++. .++++.++|++++ +|.. .+.|..+.+.+.+.+....
T Consensus 148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETA 199 (515)
T ss_pred ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhcc
Confidence 58888899998888 7899999999976 4443 6889899998888887664
No 184
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.03 E-value=3.1e-05 Score=66.61 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe-------------CC------Cccc-ccCCCCCCceE
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-------------GT------TNEH-HRAKSDGFPTI 355 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id-------------~~------~~~~-~~~~i~~~P~i 355 (432)
.+++++|+||++||..|+...|.+.++.+.... ++.++..| .+ ..+. ..|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 468899999999999999999999998766432 45544421 00 0011 35788999998
Q ss_pred EEEeCCCcccCceeccCC-CCHHHHHHHHHhc
Q 013976 356 LFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 386 (432)
Q Consensus 356 ~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~ 386 (432)
+++.++..+ .+.|. ...+.+.+.++..
T Consensus 151 ~lID~~G~I----~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKI----RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeE----EEccCCCCHHHHHHHHHHH
Confidence 888433333 44553 4556666666644
No 185
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.02 E-value=1.8e-05 Score=68.49 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 340 (432)
.++.+||.||++||+.|...+|.+.++..++++. ++.+..|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 3689999999999999999999999999999864 6888888864
No 186
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.02 E-value=1.4e-05 Score=65.77 Aligned_cols=68 Identities=19% Similarity=0.454 Sum_probs=52.0
Q ss_pred CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------ccCCCC-
Q 013976 296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 350 (432)
Q Consensus 296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~- 350 (432)
.+++++|.||++ ||++|....|.+.++++.+++. ++.++.+..+.+.. ..+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478899999999 9999999999999999998764 56666666554321 245777
Q ss_pred --------CCceEEEEeCCCcc
Q 013976 351 --------GFPTILFFPAGNKS 364 (432)
Q Consensus 351 --------~~P~i~~~~~g~~~ 364 (432)
.+|+++++-+..++
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE
T ss_pred ccccccCCeecEEEEEECCCEE
Confidence 99999888554443
No 187
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.02 E-value=2.1e-05 Score=61.43 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCcceEEEEE-------eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc----cccchhhhhCCCCCCCcEEEEEeC
Q 013976 168 PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 168 ~~~~~i~~~~-------~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~----~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
+.+++|.|++ +| ++|+.+.+.+++++.++.+++.|+.||+++.. -+..+...++|. ...|+++++..
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~~~~ 99 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLRWKT 99 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEEEcC
Confidence 5678888999 89 99999999999999999978999999997621 134778889997 23499999954
Q ss_pred CCCceecCCCCCCHHHHHHHH
Q 013976 236 DDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 236 ~~~~~y~~~~~~~~~~i~~fi 256 (432)
+. +..-..=.+...+..|.
T Consensus 100 ~~--~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 100 PQ--RLVEDECLQADLVEMFF 118 (119)
T ss_pred Cc--eecchhhcCHHHHHHhh
Confidence 32 22111124666666664
No 188
>PLN02412 probable glutathione peroxidase
Probab=98.00 E-value=2.9e-05 Score=65.32 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=64.5
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC------ccc--------cc----CC---------
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NEH--------HR----AK--------- 348 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~------~~~--------~~----~~--------- 348 (432)
.++.+||.||++||+.|....|.+.++.+.|++. ++.++-|+++. ... .+ |.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3588999999999999999899999999999874 68888887632 110 01 11
Q ss_pred ---------------------CCCCceEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 349 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 349 ---------------------i~~~P~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
+...|+.+++ ++|+.+. .+.|..+.+.|...|.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence 2234677777 5555554 67788888888888887653
No 189
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.99 E-value=1.4e-05 Score=56.98 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=51.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR 374 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~ 374 (432)
+.+|+++||++|+.+.+.|.+. ++.+..+|++.+.. ..+++.++|++++. |. .+.| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence 5789999999999998887652 57888889887654 24789999999885 32 3445 5
Q ss_pred CHHHHHHHHH
Q 013976 375 TVVALYKFLK 384 (432)
Q Consensus 375 ~~~~l~~fi~ 384 (432)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888763
No 190
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.3e-05 Score=66.89 Aligned_cols=115 Identities=12% Similarity=0.256 Sum_probs=90.3
Q ss_pred CCceEEEecccchhhhhcCCC--cEEEEEeCC----CChhhhhhHHHHHHHHHHhcCC------CCEEEEEEeCCCccc-
Q 013976 278 DGDVKIVVGNNFDEIVLDESK--DVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH- 344 (432)
Q Consensus 278 ~~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~----~c~~c~~~~~~~~~la~~~~~~------~~~~~~~id~~~~~~- 344 (432)
+..|..+++++|..++..... -++|+|.|. .|.-|++....+.-+|..+..+ .++-|..+|.++.+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 456899999999999865544 378888874 5999999999999999987642 268999999998777
Q ss_pred -ccCCCCCCceEEEEeCC-CcccCceeccC---CCCHHHHHHHHHhcCCCCCc
Q 013976 345 -HRAKSDGFPTILFFPAG-NKSFDPINVDV---DRTVVALYKFLKKNASIPFK 392 (432)
Q Consensus 345 -~~~~i~~~P~i~~~~~g-~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~ 392 (432)
+.+++.+.|++++|+.. ....++..+++ +..++++.+|+++.+.....
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 78999999999999332 22224445554 45689999999999986664
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.96 E-value=3.2e-05 Score=60.56 Aligned_cols=66 Identities=29% Similarity=0.626 Sum_probs=56.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC-Cccc--ccCC--CCCCceEEEEeCCCcc
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAK--SDGFPTILFFPAGNKS 364 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~-~~~~--~~~~--i~~~P~i~~~~~g~~~ 364 (432)
++++++.||++||++|+.+.|.+.+++..+.. .+.+..+|+. .+.. ..+. +..+|+++++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67888888999999999999999999999987 6899999986 3333 5677 8999999998888654
No 192
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.96 E-value=2.9e-05 Score=53.33 Aligned_cols=58 Identities=33% Similarity=0.672 Sum_probs=48.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-----cCCCCCCceEEEEeCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH-----RAKSDGFPTILFFPAG 361 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~-----~~~i~~~P~i~~~~~g 361 (432)
++.|+++||++|..+.+.+.++ ..... ++.+..++++..... .+.+..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 33333 799999998888762 6789999999999877
No 193
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.95 E-value=4.3e-05 Score=63.41 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 339 (432)
.++++||.||++||++|...+|.+.++.+.+++. ++.+..|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 3578999999999999999999999999999864 688888886
No 194
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.91 E-value=8.1e-05 Score=63.04 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc------cc-------------------------
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EH------------------------- 344 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~------~~------------------------- 344 (432)
.++.+||+||++||..|....+.+.++...+++. ++.|+.|.++.. +.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 5688999999999999999999999999999853 688888877542 10
Q ss_pred ccCCCCCCceEEEEeCCCcccCceecc-----------CCCCHHHHHHHHHhcCCC
Q 013976 345 HRAKSDGFPTILFFPAGNKSFDPINVD-----------VDRTVVALYKFLKKNASI 389 (432)
Q Consensus 345 ~~~~i~~~P~i~~~~~g~~~~~~~~y~-----------g~~~~~~l~~fi~~~~~~ 389 (432)
..+++...|+++++.++.++ .|. +..+...+.+.|...++.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 13478899999999543333 233 234567788888777653
No 195
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.87 E-value=0.0006 Score=69.06 Aligned_cols=185 Identities=10% Similarity=0.152 Sum_probs=129.0
Q ss_pred HHHHHhhc--CCeEEEEEecCCC--cchHHHHH-HHhccCCCceEEE---eCcHHHHhHcCCCCCCCCCeEEEEecCC-C
Q 013976 56 EAERVLTS--ETKVVLGYLNSLV--GSESEVLA-DASRLEDDVNFYQ---TTNPDVAKIFHLDSKVNRPALVMVKKET-E 126 (432)
Q Consensus 56 ~l~~~~~~--~~~~vv~f~~~~~--~~~~~~f~-~~a~~~~~~~F~~---~~~~~~~~~~~~~~~~~~p~i~l~~~~~-~ 126 (432)
+|+.++.. +++.++.|.++.+ ..+.+.|. +++.+.+.+.+-. .++.++++.|++.. .|++++++..+ .
T Consensus 356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~---~P~~~i~~~~~~~ 432 (555)
T TIGR03143 356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITK---LPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCc---CCEEEEEeCCCcc
Confidence 35555543 4667777776543 22444554 5777777777654 34668899999976 69999986433 3
Q ss_pred ceecccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEEE-EEeC-cchhhhHHHHHHHHHhccCceE
Q 013976 127 KISYFADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLLL-FAVS-NDSEKLLPVFEEAAKSFKGKLI 201 (432)
Q Consensus 127 ~~~~y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~~-~~~~-~~~~~~~~~~~~~a~~~~~~i~ 201 (432)
....| .|--.-.++.+||.. .+-+ -..++.+....+-.-.++..|.+ +.++ +.|......++++|.... ++.
T Consensus 433 ~~i~f-~g~P~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~ 509 (555)
T TIGR03143 433 TGLKF-HGVPSGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVE 509 (555)
T ss_pred cceEE-EecCccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-Cce
Confidence 44788 787766777777753 2322 33566666666654445655554 5677 899999999999999976 488
Q ss_pred EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
.-.+|+.. .+++++.|++... |++++.. . ..+.|..+.+.|..++
T Consensus 510 ~~~i~~~~---~~~~~~~~~v~~v--P~~~i~~----~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 510 AEMIDVSH---FPDLKDEYGIMSV--PAIVVDD----Q-QVYFGKKTIEEMLELI 554 (555)
T ss_pred EEEEECcc---cHHHHHhCCceec--CEEEECC----E-EEEeeCCCHHHHHHhh
Confidence 99999988 5699999999888 9997741 2 2346878999888876
No 196
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00013 Score=62.70 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=71.7
Q ss_pred CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCC
Q 013976 169 IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL 247 (432)
Q Consensus 169 ~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~ 247 (432)
+.+++-|++.| ++|+.+.|.|..+|.+|.+ ..|..||+++. +..+..+|++.. |+++++.++. +...-...
T Consensus 22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c---~~taa~~gV~am--PTFiff~ng~--kid~~qGA 93 (288)
T KOG0908|consen 22 KLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDEC---RGTAATNGVNAM--PTFIFFRNGV--KIDQIQGA 93 (288)
T ss_pred eEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHh---hchhhhcCcccC--ceEEEEecCe--EeeeecCC
Confidence 34567799999 9999999999999999987 89999999985 477888999988 9999997664 33443448
Q ss_pred CHHHHHHHHHHHhcCC
Q 013976 248 TLDKIKTFGEDFLEGK 263 (432)
Q Consensus 248 ~~~~i~~fi~~~~~g~ 263 (432)
+...|+.-|..|.+..
T Consensus 94 d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 94 DASGLEEKVAKYASTS 109 (288)
T ss_pred CHHHHHHHHHHHhccC
Confidence 8899999999987643
No 197
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.81 E-value=9.8e-05 Score=53.05 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=52.1
Q ss_pred EeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeccC-CCCHHHHHH
Q 013976 304 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYK 381 (432)
Q Consensus 304 f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~g-~~~~~~l~~ 381 (432)
+++++|..|..+...+.+++..++ +.+-.+|....+. .++++.++|++++ +|+. .|.| ..+.+.|.+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELKE 73 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHHH
Confidence 368889999999999999988883 4555556544333 6899999999955 5543 7899 888899999
Q ss_pred HHH
Q 013976 382 FLK 384 (432)
Q Consensus 382 fi~ 384 (432)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 198
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.75 E-value=9.9e-05 Score=64.50 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC---------Cccc--ccCCCCCCceEEEEeCCCccc
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------TNEH--HRAKSDGFPTILFFPAGNKSF 365 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~---------~~~~--~~~~i~~~P~i~~~~~g~~~~ 365 (432)
++.-|++||.+.|..|+.+.|++..++..++= .+..+.+|.. .+.. .+++|..+|++++...+....
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 46679999999999999999999999999954 4555655532 1122 468999999999996655321
Q ss_pred CceeccCCCCHHHHHHH
Q 013976 366 DPINVDVDRTVVALYKF 382 (432)
Q Consensus 366 ~~~~y~g~~~~~~l~~f 382 (432)
.| .-.|..+...|.+-
T Consensus 198 ~p-v~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YP-VSQGFMSLDELEDR 213 (215)
T ss_pred EE-EeeecCCHHHHHHh
Confidence 22 34577888887754
No 199
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.74 E-value=3.9e-05 Score=59.89 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHH---HHHhccCceEEEEEecCCcc-----------------cccchhhhhCCCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKGKLIFVYVQMDNED-----------------VGKPVSEYFGITGE 225 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~---~a~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~~i~~~ 225 (432)
++++.+++|+.+| +.|+.+.+.+.+ ++..++.++.++.+++.... .+..+.+.+|++++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4567788888888 999999887774 66677767888888887532 02357899999998
Q ss_pred CCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 226 APKVLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
|++++++.++...+.+.|..+.+.|.+++
T Consensus 84 --Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 --PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999875554556678999999888764
No 200
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.74 E-value=0.00026 Score=54.91 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=76.4
Q ss_pred eEEEecccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHH---hcCCCCEEEEEEeCCCccc--ccCCCCC--Cc
Q 013976 281 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH---LRGVDSIVIAKMDGTTNEH--HRAKSDG--FP 353 (432)
Q Consensus 281 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~---~~~~~~~~~~~id~~~~~~--~~~~i~~--~P 353 (432)
|..++.+++..+. +.+.+..++|+ .-..-..+...+.++|+. +++ ++.|+.+|.+.... ..++++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 3557778887755 55555555555 333457788999999999 887 69999999998765 6788886 99
Q ss_pred eEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCC
Q 013976 354 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 389 (432)
Q Consensus 354 ~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 389 (432)
.+++....... +...+.+..+.++|.+|+++....
T Consensus 76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhcC
Confidence 99999765422 222266889999999999988753
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.71 E-value=0.0002 Score=54.25 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred hhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceecc
Q 013976 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVD 371 (432)
Q Consensus 293 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~i~~~~~g~~~~~~~~y~ 371 (432)
+......++|-|+..+|+. ....|.++|..+++ .+.|+.+.- ... ..+.+ .-|++++|+.... .++.|.
T Consensus 13 ~~~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~-~~~~i~l~~~~~~--~~~~y~ 82 (97)
T cd02981 13 FLDKDDVVVVGFFKDEESE---EYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKV-KPGSVVLFKPFEE--EPVEYD 82 (97)
T ss_pred HhccCCeEEEEEECCCCcH---HHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCC-CCCceEEeCCccc--CCccCC
Confidence 3456778888888888874 56789999999987 588887772 222 34554 4599999977643 566899
Q ss_pred CCCCHHHHHHHHHhc
Q 013976 372 VDRTVVALYKFLKKN 386 (432)
Q Consensus 372 g~~~~~~l~~fi~~~ 386 (432)
|..+.+.|.+||..+
T Consensus 83 g~~~~~~l~~fi~~~ 97 (97)
T cd02981 83 GEFTEESLVEFIKDN 97 (97)
T ss_pred CCCCHHHHHHHHHhC
Confidence 999999999999864
No 202
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.68 E-value=0.00012 Score=56.98 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=45.1
Q ss_pred CCCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------c---ccCCCCCCceEEE
Q 013976 296 ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTILF 357 (432)
Q Consensus 296 ~~~~~lv~f~~-------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------~---~~~~i~~~P~i~~ 357 (432)
++++++|+|++ +||+.|....|++.+.-..... +..++.+.+..-. - +.+.++++||++-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 45788888885 5999999999999998888655 6888888775321 1 3689999999999
Q ss_pred EeCCC
Q 013976 358 FPAGN 362 (432)
Q Consensus 358 ~~~g~ 362 (432)
+..+.
T Consensus 96 ~~~~~ 100 (119)
T PF06110_consen 96 WETGE 100 (119)
T ss_dssp CTSS-
T ss_pred ECCCC
Confidence 98774
No 203
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.66 E-value=0.00069 Score=50.16 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=76.0
Q ss_pred ceeecCCCchhhhccCCC-cceEEEEEeC--cchhhhHHHHHHHHHhccC--ceEEEEEecCCcccccchh----hhhCC
Q 013976 152 LVTIFTRENAPSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGI 222 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~i 222 (432)
....+++++...+..... -.+|+.|+.. ++..+++..++++|+.+.. ++.|+++|.+++. -+. +.|||
T Consensus 2 tlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FP---llv~yWektF~I 78 (120)
T cd03074 2 TLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFP---LLVPYWEKTFGI 78 (120)
T ss_pred chhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCc---hhhHHHHhhcCc
Confidence 345566666555433222 3366777766 7788899999999999985 6999999999853 322 56788
Q ss_pred CCCCCcEEEEEeCCC--CceecCCCC---CCHHHHHHHHHHHh
Q 013976 223 TGEAPKVLAYTGNDD--AKKHILDGE---LTLDKIKTFGEDFL 260 (432)
Q Consensus 223 ~~~~~P~i~i~~~~~--~~~y~~~~~---~~~~~i~~fi~~~~ 260 (432)
.-. -|+|.+.+... +..+.+++. .+.+.|..||++++
T Consensus 79 Dl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 79 DLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 765 59998887644 567888664 68999999999864
No 204
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.63 E-value=0.00036 Score=68.57 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=71.4
Q ss_pred hccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCC-------------------------cccccch
Q 013976 164 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN-------------------------EDVGKPV 216 (432)
Q Consensus 164 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~-------------------------~~~~~~l 216 (432)
....+++++|.||++| +.|+..++.+.+++++++. .+.|+.|.... .+-...+
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 3446778899999999 9999999999999999973 46665553210 0013456
Q ss_pred hhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 217 SEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 217 ~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
.+.|++... |+.++++.+......+.|.++.+.|..+|+..
T Consensus 132 ak~fgV~gi--PTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 132 AQSLNISVY--PSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHcCCCCc--CeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 788999877 99988876665667788999999999999943
No 205
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.63 E-value=0.00039 Score=50.93 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=72.4
Q ss_pred CceeeCCHHHHHHHhhcCCeEEEEEecCCCc--chHHHHHHHh-ccCCCceEEE--eC---cHHHHhHcCCCCCCCCCeE
Q 013976 47 GIYNITTLDEAERVLTSETKVVLGYLNSLVG--SESEVLADAS-RLEDDVNFYQ--TT---NPDVAKIFHLDSKVNRPAL 118 (432)
Q Consensus 47 ~~~~i~~~~~l~~~~~~~~~~vv~f~~~~~~--~~~~~f~~~a-~~~~~~~F~~--~~---~~~~~~~~~~~~~~~~p~i 118 (432)
.+..|.+..+++++++.+..++|.|..+... ...+.|.++| ..++.-+.+. .. ...+|+++.+....+...+
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 3457889999999999999999999876553 3677899998 5555444443 22 4579999999843333446
Q ss_pred EEEecCCCcee-cccCCCCCHHHHHHHHHh
Q 013976 119 VMVKKETEKIS-YFADGKFDKSTIADFVFS 147 (432)
Q Consensus 119 ~l~~~~~~~~~-~y~~g~~~~~~l~~fi~~ 147 (432)
.+.+..|+..+ .| +...+..+|..|++.
T Consensus 82 ~LkHYKdG~fHkdY-dR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDFHTEY-NRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCccccc-cchhhHHHHHHHhhC
Confidence 66666666655 56 777889999999875
No 206
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.62 E-value=0.00058 Score=57.85 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=71.4
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc-------------------cccchhhhhCCCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE 225 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~~i~~~ 225 (432)
.+++.++.|+++| +.|+...+.+.++++++.+. +.++.++++... ....+++.||+...
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 3456788889999 88999999999999999864 778888775321 13567899999876
Q ss_pred CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
|++++++.++.....+.|..+.+.+.+++++.
T Consensus 140 --P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 --PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99888876655555678889999999998864
No 207
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.61 E-value=0.00014 Score=57.06 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=62.6
Q ss_pred ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc---e
Q 013976 165 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK---K 240 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~---~ 240 (432)
...+++++|.|+++| ++|+.+.+.+.+.+........|+.+|.+... ......|++.+...|++++++.++.. .
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCCCchhh
Confidence 456677888899999 99999999999987765544567777776532 23457788876346999999754422 2
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 013976 241 HILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 241 y~~~~~~~~~~i~~fi~~~ 259 (432)
+...|..+.+.+..++..+
T Consensus 94 ~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 94 INKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred ccCCCCccccccCCCHHHH
Confidence 3334555555555555444
No 208
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.59 E-value=0.0004 Score=59.42 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976 297 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340 (432)
Q Consensus 297 ~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 340 (432)
+++ +|+++||+||++|...+|.+.++.+.|++. ++.+.-|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 454 456679999999999999999999999864 6888888763
No 209
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.57 E-value=0.00038 Score=51.25 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=55.4
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc-----cc---cCCCCCCceEEEEeCCCcccCceecc
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----HH---RAKSDGFPTILFFPAGNKSFDPINVD 371 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~-----~~---~~~i~~~P~i~~~~~g~~~~~~~~y~ 371 (432)
-+++|+.+||+.|..+...|++++..+. ++.+..+|++.+. .. ..+..++|+|+ -+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE-------
Confidence 4788999999999999999999987653 4788888887653 11 22457899975 456432
Q ss_pred CCCCHHHHHHHHHhcCC
Q 013976 372 VDRTVVALYKFLKKNAS 388 (432)
Q Consensus 372 g~~~~~~l~~fi~~~~~ 388 (432)
| ..++|.++++++.+
T Consensus 70 g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 G--GCTDFEAYVKENLG 84 (85)
T ss_pred c--CHHHHHHHHHHhcc
Confidence 2 56788888887764
No 210
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.56 E-value=0.00016 Score=59.86 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 340 (432)
+++++|.||++||+ |....|.+.++.+.+++. ++.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 68999999999999 999999999999999864 6888888764
No 211
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.53 E-value=0.00039 Score=58.73 Aligned_cols=82 Identities=6% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHH-hcCCCCEEEEEEeCCCc-------------------c-----------c-
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTN-------------------E-----------H- 344 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~-~~~~~~~~~~~id~~~~-------------------~-----------~- 344 (432)
++.+||.|||.||.+|..-.|.+.+|+.+ +.-...-...-||.++. + .
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 78999999999999999999999999643 22100001133333321 0 0
Q ss_pred ccCCCCCCceE-EEE-eCCCcccCceeccCCCCHHHHHH
Q 013976 345 HRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYK 381 (432)
Q Consensus 345 ~~~~i~~~P~i-~~~-~~g~~~~~~~~y~g~~~~~~l~~ 381 (432)
..+++.+.|+. +++ ++|..+. .+.|..+.+.+.+
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~ 174 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQT 174 (184)
T ss_pred HhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHH
Confidence 25688899877 566 6665544 6788877776655
No 212
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.50 E-value=0.00031 Score=58.15 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=80.3
Q ss_pred eEEEe-cccchhhhhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEE
Q 013976 281 VKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 357 (432)
Q Consensus 281 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~ 357 (432)
...+. ..+|-+.+ ..+.-|++-||.|.-..|+-|-..++.||+.+-. ..|++||+...+- .+++|.-.|++++
T Consensus 68 y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 44444 46666655 4567899999999999999999999999999876 7999999999888 7999999999999
Q ss_pred EeCCCcccCceecc--C---CCCHHHHHHHHHhcC
Q 013976 358 FPAGNKSFDPINVD--V---DRTVVALYKFLKKNA 387 (432)
Q Consensus 358 ~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~ 387 (432)
|++|..+...+.|. | ..+.+.|..-|-...
T Consensus 144 ~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred EEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 99998876445555 2 345555555555444
No 213
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.47 E-value=0.00074 Score=59.79 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCccc
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF 365 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------~~~~i~~~P~i~~~~~g~~~~ 365 (432)
+..-|++||.+.|+.|.++.|++..++..++- .+..+.+|....+. .++++..+|++++...+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 34789999999999999999999999999986 57777777533221 368999999999996654321
Q ss_pred CceeccCCCCHHHHHHHHHhcCC
Q 013976 366 DPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 366 ~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
.|+ -.|..+.+.|.+-|...++
T Consensus 221 ~pv-~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPL-SYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEE-eeccCCHHHHHHHHHHHHh
Confidence 344 3467899888877766543
No 214
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.46 E-value=0.00054 Score=61.02 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=65.9
Q ss_pred CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCcccC
Q 013976 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSFD 366 (432)
Q Consensus 298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------~~~~i~~~P~i~~~~~g~~~~~ 366 (432)
+.-|++||...|+.|+++.|++..++..++= .+..+.+|....+. .++++..+|++++...+.....
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 4789999999999999999999999999975 46666666542211 3678999999999966543213
Q ss_pred ceeccCCCCHHHHHHHHHhcCC
Q 013976 367 PINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 367 ~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
|+ =.|..+.+.|.+-|...++
T Consensus 229 pv-~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 229 PL-AYGFISQDELKERILNVLT 249 (256)
T ss_pred EE-eeccCCHHHHHHHHHHHHh
Confidence 33 3468899888877765543
No 215
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.45 E-value=0.00076 Score=61.27 Aligned_cols=92 Identities=9% Similarity=0.000 Sum_probs=68.8
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCce
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKK 240 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~ 240 (432)
++..++.||++| +.|+...+.+.+++++|.-.+..+.+|..... ....+.+.+||... |++++++.+++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECCCCEE
Confidence 446788899999 99999999999999999755555656553210 12357889999887 9999998744443
Q ss_pred ec-CCCCCCHHHHHHHHHHHhc
Q 013976 241 HI-LDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 241 y~-~~~~~~~~~i~~fi~~~~~ 261 (432)
.. ..|.++.+.|.+.+.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 33 4588999999999987654
No 216
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.42 E-value=0.00023 Score=52.18 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~~i~~~P~i~~~~~g~ 362 (432)
+++|+++||++|..+.+.+.++. ... .+.+..+|.+.+.. ...++.++|++ |-+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999999986 322 47777777664432 23578899998 44554
No 217
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.41 E-value=0.00071 Score=68.33 Aligned_cols=91 Identities=5% Similarity=0.080 Sum_probs=71.4
Q ss_pred CCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCc--
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAK-- 239 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~-- 239 (432)
+++++++.||++| ..|+.+.+.. .++.+.+++ +.++.+|.++.+ ....+++.|++.+. |++++++.+...
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~--Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL--PTILFFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC--CEEEEECCCCCCcc
Confidence 4667888999999 9999987764 667777765 889999998631 14578899999887 999999754433
Q ss_pred eecCCCCCCHHHHHHHHHHHh
Q 013976 240 KHILDGELTLDKIKTFGEDFL 260 (432)
Q Consensus 240 ~y~~~~~~~~~~i~~fi~~~~ 260 (432)
...+.|..+.+++.+++++..
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred cccccCCCCHHHHHHHHHHhc
Confidence 356789999999999998753
No 218
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.41 E-value=0.0013 Score=51.43 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=70.4
Q ss_pred cCCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC-CCCce
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN-DDAKK 240 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~-~~~~~ 240 (432)
..+++.+|.++.+| ..|+.+.. .| .++.+.++.+..+..+|....+ ...+++.|++.+. |+++++++ +....
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~--P~~~~i~~~~g~~l 91 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY--PHIAIIDPRTGEVL 91 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC--CeEEEEeCccCcEe
Confidence 34556667777888 78998764 33 3466667667888888888655 7788999999887 99999987 55556
Q ss_pred ecCCCCCCHHHHHHHHHHHhc
Q 013976 241 HILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 241 y~~~~~~~~~~i~~fi~~~~~ 261 (432)
+...|..+.+.+.+-++++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 677899999998888887653
No 219
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.39 E-value=0.0012 Score=51.24 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=67.9
Q ss_pred EEecccchhhhhcCCCcEEEEEe----CCCChhhhhhHHHHHHHHHHhc-CCCCEEEEEEeCCCccc--ccCCCCC----
Q 013976 283 IVVGNNFDEIVLDESKDVLLEIY----APWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEH--HRAKSDG---- 351 (432)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~lv~f~----~~~c~~c~~~~~~~~~la~~~~-~~~~~~~~~id~~~~~~--~~~~i~~---- 351 (432)
.++.++..... ..+.++.|+ +..-..-..++..+.++|+.++ + ++.|+.+|.+.... ..++++.
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~ 77 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE 77 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence 34556666653 344444443 2233455778899999999999 6 69999999987655 5677774
Q ss_pred CceEEEEeCCCcccCceeccCCC-CHHHHHHHHHhc
Q 013976 352 FPTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKN 386 (432)
Q Consensus 352 ~P~i~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~ 386 (432)
+|.++++..+.. +. .+.+.. +.++|.+|+++.
T Consensus 78 ~P~~~i~~~~~~--KY-~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKGK--KY-VMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCCC--cc-CCCcccCCHHHHHHHHHHh
Confidence 999999875432 22 256777 999999999874
No 220
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.35 E-value=0.00069 Score=53.78 Aligned_cols=46 Identities=26% Similarity=0.524 Sum_probs=40.1
Q ss_pred CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc
Q 013976 296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 342 (432)
Q Consensus 296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 342 (432)
.+++++|.||+. ||..|....+.+.++...++.. ++.++.|..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccc
Confidence 458999999999 9999999999999999999864 788888887654
No 221
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.33 E-value=0.0002 Score=57.82 Aligned_cols=69 Identities=23% Similarity=0.511 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC-C--CEEEEEEeCCCccc-------------------------ccC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-D--SIVIAKMDGTTNEH-------------------------HRA 347 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~-~--~~~~~~id~~~~~~-------------------------~~~ 347 (432)
.++.+.++|.|.||++|+.+-|.+.++....+++ . .+.|+.-|-+..+. .+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3588999999999999999999999999998874 2 34555444433211 256
Q ss_pred CCCCCceEEEE-eCCCcc
Q 013976 348 KSDGFPTILFF-PAGNKS 364 (432)
Q Consensus 348 ~i~~~P~i~~~-~~g~~~ 364 (432)
.+.+.|++++. ++|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 89999999988 555443
No 222
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.29 E-value=0.0064 Score=46.73 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=71.8
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHH-Hhcc--CceEEEEEecCCc--ccccchhhhhCCCCCCC
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAA-KSFK--GKLIFVYVQMDNE--DVGKPVSEYFGITGEAP 227 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a-~~~~--~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~ 227 (432)
+..|+.-+|++++...+ .+++=|...-++-.-..+|..+| +... +.+.++.|.+.++ ..|.+|.++|++.....
T Consensus 6 ~v~LD~~tFdKvi~kf~-~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFK-YVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp SEEESTTHHHHHGGGSS-EEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred eeeccceehhheeccCc-eEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 56788889999887763 44444444444444456677788 3332 4688888876653 13788999999988778
Q ss_pred cEEEEEeCCCCceecC--CCCCCHHHHHHHHHHH
Q 013976 228 KVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDF 259 (432)
Q Consensus 228 P~i~i~~~~~~~~y~~--~~~~~~~~i~~fi~~~ 259 (432)
|++.++..+...+..| .|+++.++|.+|+...
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 9999998655555555 8999999999999874
No 223
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00034 Score=58.88 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCC----CCcEEEEEeCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGE----APKVLAYTGNDD 237 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~----~~P~i~i~~~~~ 237 (432)
....|+|-||+.| +.|....+.+.+++.+|.. .+.|+.+|..- .++....|+|+.. ++|++.++..+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHheeeccCcccccCCeEEEEccch
Confidence 3346789999999 9999999999999999985 59999999998 5688999999754 899999987654
No 224
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.28 E-value=0.0019 Score=46.33 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=54.4
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC-CCH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTL 249 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~-~~~ 249 (432)
.+.||++| +.|+.+.+.+++++.++...+.|..+|-. +.+..+|+.+. |++++ ++ +.. +.|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~------~~a~~~~v~~v--Pti~i--~G--~~~-~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM------NEILEAGVTAT--PGVAV--DG--ELV-IMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH------HHHHHcCCCcC--CEEEE--CC--EEE-EEeccCCH
Confidence 36789999 99999999999999999988888888721 23677899888 99988 22 222 5563 455
Q ss_pred HHHHHHH
Q 013976 250 DKIKTFG 256 (432)
Q Consensus 250 ~~i~~fi 256 (432)
+.+.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 225
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.28 E-value=0.001 Score=52.52 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=65.0
Q ss_pred CCchhhhccCCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhh--------hhCCCCC
Q 013976 158 RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSE--------YFGITGE 225 (432)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~--------~~~i~~~ 225 (432)
.+.+......++++++.|+++| ..|+.+.+ .+ .+++..+...+.++.+|.++ .+++.+ .+|+.+.
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~---~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE---RPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc---CcHHHHHHHHHHHHhcCCCCC
Confidence 3344455567788888899999 99999876 23 35777776678999999876 345443 2477776
Q ss_pred CCcEEEEEeCCCCceecCC-----CCCCHHHHHHHHHHH
Q 013976 226 APKVLAYTGNDDAKKHILD-----GELTLDKIKTFGEDF 259 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~-----~~~~~~~i~~fi~~~ 259 (432)
|+++++++++...+... ...+...+..+++.+
T Consensus 82 --Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 82 --PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred --CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 99999988764443322 234455666666654
No 226
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.28 E-value=0.0011 Score=46.18 Aligned_cols=55 Identities=4% Similarity=0.017 Sum_probs=46.4
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i 232 (432)
+.+|+.+| +.|+.+.+.+++++..+ +++.|..+|.++ .+++.+.+|+... |++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~---~~~l~~~~~i~~v--Pti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAE---FPDLADEYGVMSV--PAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEccc---CHhHHHHcCCccc--CEEEE
Confidence 46778888 99999999999998875 459999999887 4578999999877 99966
No 227
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.26 E-value=0.0015 Score=50.99 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=64.7
Q ss_pred hcCCCcEEEEEeCC----CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEE-eCCCcc
Q 013976 294 LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFF-PAGNKS 364 (432)
Q Consensus 294 ~~~~~~~lv~f~~~----~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~-~~g~~~ 364 (432)
..+.|.++|++|++ ||..|+.... =.++.+.+.. ++.+...|+...+. ..+++.++|+++++ +.++..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 34568999999999 8888865531 1233344444 69999999998876 46899999999998 222221
Q ss_pred cCceeccCCCCHHHHHHHHHhcC
Q 013976 365 FDPINVDVDRTVVALYKFLKKNA 387 (432)
Q Consensus 365 ~~~~~y~g~~~~~~l~~fi~~~~ 387 (432)
.-.-+..|..+.+.|+..|....
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHH
Confidence 01236889999999999887654
No 228
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00067 Score=57.79 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=103.9
Q ss_pred cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCC
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 244 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~ 244 (432)
+..+..++.|++.| ..|..+...+..+|+.. .++.|+.++... .++++..+.+... |.+..+..+.. .-...
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~v~~v--p~~~~~~~~~~-v~~l~ 87 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIAVEAV--PYFVFFFLGEK-VDRLS 87 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHHHhcC--ceeeeeecchh-hhhhh
Confidence 34445577788999 99999999999999999 559999999988 6699999999988 88877744431 11223
Q ss_pred CCC---CHHHHHHHHHHHh---cCCcCccccCCCCCCCCCCceEEEecccchhhhhc--CCCcEEEEEe----CCCChhh
Q 013976 245 GEL---TLDKIKTFGEDFL---EGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD--ESKDVLLEIY----APWCGHC 312 (432)
Q Consensus 245 ~~~---~~~~i~~fi~~~~---~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~--~~~~~lv~f~----~~~c~~c 312 (432)
+.. ....+..+..... .+...+..+. .+..... . .+..+.. +.+++.++.= .|.|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~-------~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS 157 (227)
T KOG0911|consen 88 GADPPFLVSKVEKLAESGSASLGMGLSTTIRE--TQTTNET-------D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFS 157 (227)
T ss_pred ccCcHHHHHHHHHhhhhcccccCCCCCcchhc--ccccchh-------h-HHHHHHHhcccCeEEEEecCCCCccccccc
Confidence 322 2233333333322 0001111000 0000000 1 2222211 3345555442 4779998
Q ss_pred hhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccC---CCCCCceE-EEEeCCC
Q 013976 313 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA---KSDGFPTI-LFFPAGN 362 (432)
Q Consensus 313 ~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~---~i~~~P~i-~~~~~g~ 362 (432)
+++..++... ++.+...|+..++.-+. ..+.+||+ -+|-+|.
T Consensus 158 ~~~v~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 158 RQLVGILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred HHHHHHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 8887777665 67799999888877443 34466776 6677773
No 229
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.20 E-value=0.0034 Score=52.25 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=97.2
Q ss_pred HHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhhhcCC--CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCC
Q 013976 254 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS 331 (432)
Q Consensus 254 ~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~ 331 (432)
.|++.|...++..+..... ...-|.|..+++..|...|...+ -.|+|-.|..+-..|.-+...+..||.+|..
T Consensus 68 rfLE~YR~kRl~E~r~~~~--k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--- 142 (240)
T KOG3170|consen 68 RFLEMYRIKRLAEWRATAE--KAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--- 142 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---
Confidence 4788877766543322111 11257899999999999886554 3578888999999999999999999999987
Q ss_pred EEEEEEeCCCcccccCCCCCCceEEEEeCCCccc---CceeccC-CCCHHHHHHHHHhcCCCCC
Q 013976 332 IVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSF---DPINVDV-DRTVVALYKFLKKNASIPF 391 (432)
Q Consensus 332 ~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~---~~~~y~g-~~~~~~l~~fi~~~~~~~~ 391 (432)
++|++|-... -++.|.-...||+++|..|.... .+..+-| ..+.+++..+|-+.....-
T Consensus 143 iKFVki~at~-cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~l~ 205 (240)
T KOG3170|consen 143 IKFVKIPATT-CIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAALT 205 (240)
T ss_pred ceEEeccccc-ccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcccccc
Confidence 8888876432 34678888999999999986543 2334555 5688999999888775443
No 230
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.18 E-value=0.0052 Score=50.57 Aligned_cols=90 Identities=9% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-cc------ccchh-hhh---CCCCCCCcEEEEEeC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DV------GKPVS-EYF---GITGEAPKVLAYTGN 235 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-~~------~~~l~-~~~---~i~~~~~P~i~i~~~ 235 (432)
+...++.||++| +.|++..+.+.++++++.-.+..+.+|.... .+ ..... ..+ ++... |+.++++.
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeEEEEeC
Confidence 334588899999 9999999999999999854444444443210 00 01222 334 55555 99999987
Q ss_pred CCCcee-cCCCCCCHHHHHHHHHHH
Q 013976 236 DDAKKH-ILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 236 ~~~~~y-~~~~~~~~~~i~~fi~~~ 259 (432)
+++..+ ...|.++.+.+.+.+...
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 755433 467899999998888765
No 231
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0031 Score=47.91 Aligned_cols=73 Identities=21% Similarity=0.413 Sum_probs=53.0
Q ss_pred ccchhhhh--cCCCcEEEEEeC--------CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccC
Q 013976 287 NNFDEIVL--DESKDVLLEIYA--------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRA 347 (432)
Q Consensus 287 ~~~~~~~~--~~~~~~lv~f~~--------~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~ 347 (432)
++|++.+. .+++-++|+|++ +||..|.+..|.+.+.-+.... ++.|+++++..-+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 34454442 233448888875 5999999999999999886666 79999999876433 123
Q ss_pred C-CCCCceEEEEeCC
Q 013976 348 K-SDGFPTILFFPAG 361 (432)
Q Consensus 348 ~-i~~~P~i~~~~~g 361 (432)
. ++.+||++=|.++
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 3 4899999999853
No 232
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.18 E-value=0.00091 Score=54.42 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=35.7
Q ss_pred CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
++.++|+|| +.||..|....+.+.++...+... ++.++.|..+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~ 67 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDS 67 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 678999999 589999999999999999988753 57777776543
No 233
>smart00594 UAS UAS domain.
Probab=97.13 E-value=0.002 Score=51.05 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=65.5
Q ss_pred cCCCcceEEEEEeC-cchhhhHHH-HH--HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc--
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLPV-FE--EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK-- 239 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~~-~~--~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~-- 239 (432)
..++..+|+++++| .+|+.+... |. ++.+-++.++.+..+|....+ +..++..|+++++ |++++++...+.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~--P~~~~l~~~~g~~~ 101 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF--PYVAIVDPRTGQRV 101 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC--CEEEEEecCCCcee
Confidence 45556778888888 888887543 22 255555567888888988776 7889999999987 999999876532
Q ss_pred ---eecCCCCCCHHHHHHHH
Q 013976 240 ---KHILDGELTLDKIKTFG 256 (432)
Q Consensus 240 ---~y~~~~~~~~~~i~~fi 256 (432)
.....|..+.+.+..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 23467889999988876
No 234
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.13 E-value=0.0033 Score=53.22 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=65.7
Q ss_pred cCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--------------------cccchhhhhCCCC
Q 013976 166 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITG 224 (432)
Q Consensus 166 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~i~~ 224 (432)
..+++.++.||++| +.|+...+.+.+++++ .+.++.++.+... ....+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 34667888899999 9999999999888764 2555555542210 0224556677766
Q ss_pred CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976 225 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 225 ~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 261 (432)
. |+.++++.++...+.+.|..+.+.+.+++++++.
T Consensus 138 ~--P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 A--PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred C--CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 5 9777777666567778899999999999999873
No 235
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0055 Score=48.99 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHH---HHHHHhcCCCCEEEEEEeCCCccc------------------ccCCCCCCc
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNEH------------------HRAKSDGFP 353 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~---~la~~~~~~~~~~~~~id~~~~~~------------------~~~~i~~~P 353 (432)
..++..+++|-++.|..|..+...+. ++-+.+.. ++.++++|++.... ..+.++++|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 44678999999999999999876643 44455555 68888888775322 246999999
Q ss_pred eEEEE-eCCCcccCceeccCCCCHHHHHHHHHhcCC
Q 013976 354 TILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 354 ~i~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
++++| +.|+.+. ..-|-...++....++-.+.
T Consensus 118 tfvFfdk~Gk~Il---~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 118 TFVFFDKTGKTIL---ELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred eEEEEcCCCCEEE---ecCCCCCHHHHHHHHHHHHH
Confidence 99999 4555543 55677777766665554443
No 236
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.12 E-value=0.003 Score=48.86 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 225 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~ 225 (432)
+++.+++|+..| +.|+...+.+.++..++. ..+.++.++++.. +-...+.+.||+...
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 556788888999 899999999999999996 3588888888762 001467888898876
Q ss_pred CCcEEEEEeCCCCceecCC
Q 013976 226 APKVLAYTGNDDAKKHILD 244 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~ 244 (432)
|.+++++.+....+.+.
T Consensus 99 --P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 99 --PTTFLIDRDGRIRARHV 115 (116)
T ss_pred --ceEEEECCCCcEEEEec
Confidence 98888876654444443
No 237
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.09 E-value=0.0011 Score=46.90 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=44.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC----CCCCCceEEEEeCCCcccCceeccCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFFPAGNKSFDPINVDVDR 374 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~----~i~~~P~i~~~~~g~~~~~~~~y~g~~ 374 (432)
+++|+++||++|..+...+.+. ++.+..+|++.+.. ..+ .+..+|++++ +|. ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence 5789999999999988877763 46667777765443 222 5789999976 332 3333 5
Q ss_pred CHHHHHHH
Q 013976 375 TVVALYKF 382 (432)
Q Consensus 375 ~~~~l~~f 382 (432)
+.+.|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 56666655
No 238
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.07 E-value=0.00084 Score=53.49 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAG 361 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g 361 (432)
....++.|..+||+.|....|.+.+++.... ++.+-.+..+.+.. . ..+..++|+++++.++
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 3457888999999999999999999999864 35555555554444 2 2578899999999554
No 239
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.00 E-value=0.0026 Score=47.83 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhcc--CceEEEEEecCCc
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNE 210 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~--~~i~f~~vd~~~~ 210 (432)
|++.++.|+++| ++|....+.+.++.++|+ +++.|+.|..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 456788899999 889999999999999999 6788888877753
No 240
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.00 E-value=0.0033 Score=50.15 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=57.8
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc--------------------ccccchhhhhCCCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 225 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~~~ 225 (432)
.+++.++.||++| +.|....+.+.++++++. +.++.++.+.. +....+++.|++...
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 3567788899999 899999999999998873 55665553210 013456777888776
Q ss_pred CCcEEEEEeCCCCceecCCCCCCHHHH
Q 013976 226 APKVLAYTGNDDAKKHILDGELTLDKI 252 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i 252 (432)
|+.++++.++...+.+.|.++.+.|
T Consensus 102 --P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 --PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred --CeEEEECCCceEEEEEeccCChHhc
Confidence 9777776665556677787776654
No 241
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.98 E-value=0.0025 Score=46.93 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccC--CCCCCceEEEEeCCCcccCceecc
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRA--KSDGFPTILFFPAGNKSFDPINVD 371 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~--~i~~~P~i~~~~~g~~~~~~~~y~ 371 (432)
++++|..+||++|.++...|.++..... .+.+..+|++.... ... ...++|.|. -+|.. .
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~-------i 68 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH-------V 68 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE-------e
Confidence 3688999999999999888888754432 36777778764331 122 247899984 35533 2
Q ss_pred CCCCHHHHHHHHHhcCCC
Q 013976 372 VDRTVVALYKFLKKNASI 389 (432)
Q Consensus 372 g~~~~~~l~~fi~~~~~~ 389 (432)
| ..++|.++++++.+.
T Consensus 69 g--G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 69 G--GCTDFEQLVKENFDI 84 (86)
T ss_pred c--CHHHHHHHHHhcccc
Confidence 2 457888888887654
No 242
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.96 E-value=0.0049 Score=48.80 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC------------------cccccchhhhhCCCCCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------------------EDVGKPVSEYFGITGEAP 227 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~------------------~~~~~~l~~~~~i~~~~~ 227 (432)
.+++.++.||++| +.|+.+.+.+..+++++. +..+.+|..+ .+....+++.|++...
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-- 94 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT-- 94 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc--
Confidence 4467788899999 999999999999888743 2222222210 0013468889999887
Q ss_pred cEEEEEeCCCCceecCCCCCCHHHHHH
Q 013976 228 KVLAYTGNDDAKKHILDGELTLDKIKT 254 (432)
Q Consensus 228 P~i~i~~~~~~~~y~~~~~~~~~~i~~ 254 (432)
|++++++.++ ..+...|..+.+.|.+
T Consensus 95 P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 9999998776 7777888888887754
No 243
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.94 E-value=0.03 Score=56.38 Aligned_cols=180 Identities=11% Similarity=0.087 Sum_probs=119.4
Q ss_pred HHHHHHhh--cCCeEEEEEecCC-CcchHHHHH-HHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceec
Q 013976 55 DEAERVLT--SETKVVLGYLNSL-VGSESEVLA-DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISY 130 (432)
Q Consensus 55 ~~l~~~~~--~~~~~vv~f~~~~-~~~~~~~f~-~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~ 130 (432)
++|+.++. .+++.++.|.++. ...+.+.|. +++.+.+.+.+-..... . ..|++.+.+........
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------~---~~p~~~~~~~~~~~~i~ 76 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------V---RKPSFSITRPGEDTGVR 76 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------C---CCCEEEEEcCCccceEE
Confidence 45555554 3566666666531 123455555 57777777777553321 1 14999998754445678
Q ss_pred ccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEE
Q 013976 131 FADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV 205 (432)
Q Consensus 131 y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v 205 (432)
| .|--.-.++.+||.. .+-+ -..++++....+-.-.++..+. |+.+. +.|......+.++|.... +|.+-.+
T Consensus 77 f-~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~i 153 (517)
T PRK15317 77 F-AGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMI 153 (517)
T ss_pred E-EecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEE
Confidence 8 887777788888753 2333 4455666666554444455444 55555 899999999999999755 6999999
Q ss_pred ecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976 206 QMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 206 d~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
|... ++++.+.|++... |++++. + . ..+.|..+.+.+.+.+..
T Consensus 154 d~~~---~~~~~~~~~v~~V--P~~~i~--~--~-~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 154 DGAL---FQDEVEARNIMAV--PTVFLN--G--E-EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred Echh---CHhHHHhcCCccc--CEEEEC--C--c-EEEecCCCHHHHHHHHhc
Confidence 9988 6799999999877 999663 1 1 235677788766666655
No 244
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.89 E-value=0.0024 Score=52.03 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcCCC--CEEEEEEeCCCc
Q 013976 296 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGTTN 342 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~-c~~~~~~~~~la~~~~~~~--~~~~~~id~~~~ 342 (432)
.++.++|.||++||.. |....+.+.++...++... ++.+..|.++..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 4678999999999998 9999999999999997642 588888876543
No 245
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.86 E-value=0.0085 Score=51.32 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=66.1
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-------------c-------ccchhhhhCCCCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-------------V-------GKPVSEYFGITGE 225 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-------------~-------~~~l~~~~~i~~~ 225 (432)
.+++.++.||++| +.|+...+.+.+++.+ .+.++.++.++.. + ...+...||+.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 5667788899999 9999999999988753 3666666543311 0 1123346777666
Q ss_pred CCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 226 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
|+.++++.+....+...|..+.+.+.+.++..++.
T Consensus 144 --P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 144 --PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred --CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 97778876665677788999999999999998764
No 246
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.75 E-value=0.0029 Score=53.77 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
++++||.|||+||+.|.+ .+.|++|...|++. ++.+.-+.|..
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq 67 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ 67 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence 589999999999999975 78999999999864 68898898853
No 247
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00092 Score=56.97 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=63.0
Q ss_pred cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 372 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g 372 (432)
...+..++.||++||..|+++..++..+++..+ ++.|++++++..+. ..+.+...|.++++..|.++. +..|
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l~~ 88 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RLSG 88 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hhhc
Confidence 456789999999999999999999999999993 69999999998877 688999999999998888775 4555
No 248
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.72 E-value=0.0027 Score=43.13 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=39.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c-CCCCCCceEEE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILF 357 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~-~~i~~~P~i~~ 357 (432)
+++|..+||++|..+...|++. ++.+..+|++..+. + . .+..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888555 58888889888743 2 2 38899999886
No 249
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.66 E-value=0.0045 Score=50.82 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
..+|++|++.||..|+...+.+.++...+... ++.++.|+.+....
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~ 70 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEK 70 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHH
Confidence 34455556999999999999999999999753 68888888766544
No 250
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.65 E-value=0.0055 Score=50.75 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 296 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 296 ~~~~~lv~f~~~-~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
.++.+||.||+. ||..|....+.+.++...+++. ++.++.|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 457899999976 6778999999999999998763 57777777653
No 251
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.64 E-value=0.075 Score=53.47 Aligned_cols=182 Identities=11% Similarity=0.101 Sum_probs=119.2
Q ss_pred HHHHHHhh--cCCeEEEEEecCC-CcchHHHHH-HHhccCCCceEEEeCcHHHHhHcCCCCCCCCCeEEEEecCCCceec
Q 013976 55 DEAERVLT--SETKVVLGYLNSL-VGSESEVLA-DASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISY 130 (432)
Q Consensus 55 ~~l~~~~~--~~~~~vv~f~~~~-~~~~~~~f~-~~a~~~~~~~F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~~~~~~~ 130 (432)
++|+.++. .+++.++.|.++. ...+.+.|. +++.+.+.+.+-..... .. ..|++.+.+........
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~-------~~---~~p~~~~~~~~~~~~i~ 77 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTAD-------TL---RKPSFTILRDGADTGIR 77 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCC-------cC---CCCeEEEecCCcccceE
Confidence 44555544 3566666666531 123455555 57777777777442211 11 24999888654445678
Q ss_pred ccCCCCCHHHHHHHHHh---cCCCceeecCCCchhhhccCCCcceEE-EEEeC-cchhhhHHHHHHHHHhccCceEEEEE
Q 013976 131 FADGKFDKSTIADFVFS---NKLPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV 205 (432)
Q Consensus 131 y~~g~~~~~~l~~fi~~---~~~p~v~~l~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v 205 (432)
| .|--.-.++.+||.. .+-+ -..++++....+-.-..+..+. |..+. +.|......+.++|.... +|..-.+
T Consensus 78 f-~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~i 154 (515)
T TIGR03140 78 F-AGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMI 154 (515)
T ss_pred E-EecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEE
Confidence 8 787777777777753 3334 3566777766665444455444 45555 899999999999999876 5888899
Q ss_pred ecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 206 QMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 206 d~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
|+.. ++++.+.|++... |++++. + . ..+.|..+.+.+.+.+...
T Consensus 155 d~~~---~~~~~~~~~v~~V--P~~~i~--~--~-~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 155 DGAL---FQDEVEALGIQGV--PAVFLN--G--E-EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred Echh---CHHHHHhcCCccc--CEEEEC--C--c-EEEecCCCHHHHHHHHhhc
Confidence 9988 6799999999876 999663 1 1 2356777887776666554
No 252
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.61 E-value=0.0095 Score=43.20 Aligned_cols=71 Identities=6% Similarity=0.032 Sum_probs=52.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 375 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~ 375 (432)
+.+|..+||.+|..++..|.+. ++.|-.+|++.+.. ...+...+|.+++ ++. ... +.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~-Gf~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWS-GFR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEe-cCC
Confidence 6789999999999988877653 58888889887654 2346678999965 332 223 588
Q ss_pred HHHHHHHHHhcCC
Q 013976 376 VVALYKFLKKNAS 388 (432)
Q Consensus 376 ~~~l~~fi~~~~~ 388 (432)
.+.|.+.+..+..
T Consensus 66 ~~~l~~~~~~~~~ 78 (81)
T PRK10329 66 PDMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHHhhhh
Confidence 8899888877654
No 253
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.61 E-value=0.005 Score=50.28 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=36.2
Q ss_pred CCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 296 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 296 ~~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
.++.++|+||+.| |.+|....+.+.++...++ ++.++.|+.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence 3578999999988 6899999999999999874 47888888764
No 254
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.55 E-value=0.005 Score=50.62 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=35.3
Q ss_pred CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 298 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 298 ~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
+.++|.|| ++||..|....+.+.++...+++. ++.++.|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence 67777776 899999999999999999999753 67787777654
No 255
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.50 E-value=0.025 Score=47.67 Aligned_cols=90 Identities=10% Similarity=0.103 Sum_probs=63.0
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC-cc----c---ccchhhhhCCCCCCCcEEEEEeCCCCcee-
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN-ED----V---GKPVSEYFGITGEAPKVLAYTGNDDAKKH- 241 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~-~~----~---~~~l~~~~~i~~~~~P~i~i~~~~~~~~y- 241 (432)
++.||+.| +.|++..+.+++++++|.-.+..+.+|... .. . ...+...||+.....|+.++++.++...+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 77799999 999999999999999986444444444321 00 0 11244577752223599988887765544
Q ss_pred cCCCCCCHHHHHHHHHHHhc
Q 013976 242 ILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 242 ~~~~~~~~~~i~~fi~~~~~ 261 (432)
...|.++.+.+.+-++..++
T Consensus 153 ~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 153 LLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 47899999999998888775
No 256
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.47 E-value=0.016 Score=42.85 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=53.6
Q ss_pred Ccce-EEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCC
Q 013976 169 IKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 246 (432)
Q Consensus 169 ~~~~-i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~ 246 (432)
.++- .+|..+| +.|....+.+.+++..+. ++.+..+|.++ .+++...||+... |++++ + +. . .+.|.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~---~~e~a~~~~V~~v--Pt~vi-d-G~-~--~~~G~ 80 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGAL---FQDEVEERGIMSV--PAIFL-N-GE-L--FGFGR 80 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHh---CHHHHHHcCCccC--CEEEE-C-CE-E--EEeCC
Confidence 3544 4455677 999999999999998875 49999999887 4578999999987 99965 2 21 2 23465
Q ss_pred CCHHHH
Q 013976 247 LTLDKI 252 (432)
Q Consensus 247 ~~~~~i 252 (432)
.+.+.+
T Consensus 81 ~~~~e~ 86 (89)
T cd03026 81 MTLEEI 86 (89)
T ss_pred CCHHHH
Confidence 555544
No 257
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.049 Score=49.01 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCCceeecCCCchhhhccCCCcc--eEEEEEeC-c-----chhhhHHHHHHHHHhcc------C--ceE
Q 013976 138 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN--QLLLFAVS-N-----DSEKLLPVFEEAAKSFK------G--KLI 201 (432)
Q Consensus 138 ~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~--~i~~~~~~-~-----~~~~~~~~~~~~a~~~~------~--~i~ 201 (432)
.+.+.+-+.-.+...|..++.+.+..+...+... +|++|... . -|.....++.-+|..++ + ++-
T Consensus 27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF 106 (331)
T KOG2603|consen 27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF 106 (331)
T ss_pred HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence 3455555554566778999999999987754333 34444322 2 27778888999999886 2 689
Q ss_pred EEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCcee---cCC---CCCCHHHHHHHHHHHhc
Q 013976 202 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH---ILD---GELTLDKIKTFGEDFLE 261 (432)
Q Consensus 202 f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y---~~~---~~~~~~~i~~fi~~~~~ 261 (432)
|+.||.++ .+.+.+.++++.. |+++++.+..+.+- .|+ -....|++.+|+++...
T Consensus 107 F~~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 107 FCMVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999998 6789999999988 99999966553321 222 23568999999999754
No 258
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.40 E-value=0.008 Score=50.52 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 297 SKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 297 ~~~~lv~f~~~~-c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
++.++|.||+.| |..|....+.|.+++..+. ++.++.|+++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 578999999999 9999999999999998884 47777777654
No 259
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.40 E-value=0.011 Score=47.47 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=49.9
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcc---------------------cccchhhhhC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED---------------------VGKPVSEYFG 221 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~---------------------~~~~l~~~~~ 221 (432)
.++.++|.||++| +.|+...+.+.+++.++.+ .+.++.+..+... ....+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3556788889999 9999999999999998864 3555555554321 0135667889
Q ss_pred CCCCCCcEEEEEeCCC
Q 013976 222 ITGEAPKVLAYTGNDD 237 (432)
Q Consensus 222 i~~~~~P~i~i~~~~~ 237 (432)
+... |++++++.++
T Consensus 97 v~~~--P~~~lid~~G 110 (131)
T cd03009 97 IEGI--PTLIILDADG 110 (131)
T ss_pred CCCC--CEEEEECCCC
Confidence 9877 9999987554
No 260
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.36 E-value=0.0071 Score=43.70 Aligned_cols=56 Identities=11% Similarity=0.266 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~P~i~~~~~g~ 362 (432)
+..-+++|+.+||++|......|.+. ++.+..+|++.+.. ...+..++|.+.+ +|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 34557889999999999998888653 46666778776543 1246789999853 554
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.35 E-value=0.018 Score=62.71 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC---Cc---------------------ccccchhhhh
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD---NE---------------------DVGKPVSEYF 220 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~---~~---------------------~~~~~l~~~~ 220 (432)
.++.++|.||+.| +.|+...+.+++++++|+++ +.++.|.+. .. +....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4567788899999 99999999999999999875 666655321 10 0023456778
Q ss_pred CCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976 221 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 221 ~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 261 (432)
++... |++++++.+......+.|....+.+.++++..+.
T Consensus 499 ~V~~i--Pt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW--PTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc--ceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 88776 9999997666555667888899999999988754
No 262
>PHA02125 thioredoxin-like protein
Probab=96.33 E-value=0.0085 Score=42.76 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=40.2
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 231 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~ 231 (432)
+++|+++| ++|+.+.+.+.+++ +.++.+|.+. ...+++.|++.+. |+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~v~~~--PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHHIRSL--PTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcCCcee--CeEE
Confidence 57899999 99999999987764 3467777766 5688999999988 9986
No 263
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.31 E-value=0.0086 Score=41.93 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=37.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~ 362 (432)
++.|+++||++|..++..|.+. ++.+..+|+..+.. . ..+..++|+++ .+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDGELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5789999999999999888877 36677788877663 2 23556788764 3554
No 264
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.30 E-value=0.025 Score=51.00 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCceeecCC-CchhhhccCC---CcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCC
Q 013976 150 LPLVTIFTR-ENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITG 224 (432)
Q Consensus 150 ~p~v~~l~~-~~~~~~~~~~---~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~ 224 (432)
...|.+++. +.+...+... ..++|.||.+. +.|..+...|..+|.+|.. +.|+.+.+... .++..|....
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~----~~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC----PASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC----CTTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc----CcccCCcccC
Confidence 456677754 5555544332 23455677777 8999999999999999999 99999988652 2567777766
Q ss_pred CCCcEEEEEeCCCC--ceec---C-CCCCCHHHHHHHHHHH
Q 013976 225 EAPKVLAYTGNDDA--KKHI---L-DGELTLDKIKTFGEDF 259 (432)
Q Consensus 225 ~~~P~i~i~~~~~~--~~y~---~-~~~~~~~~i~~fi~~~ 259 (432)
. |+|+++.++.. .... + ..+++.+.|..|+..+
T Consensus 199 L--PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 L--PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp ---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred C--CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 5 99999986652 1111 2 2368889999999884
No 265
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.29 E-value=0.0078 Score=50.95 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------c
Q 013976 297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H 345 (432)
Q Consensus 297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------~ 345 (432)
++.++|+|| +.||..|....+.+.+++..|.+. ++.++.|.++.... .
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 578999999 899999999999999999999763 56666666543210 1
Q ss_pred cCCCC------CCceEEEEe-CCCcccCceecc----CCCCHHHHHHHHHhc
Q 013976 346 RAKSD------GFPTILFFP-AGNKSFDPINVD----VDRTVVALYKFLKKN 386 (432)
Q Consensus 346 ~~~i~------~~P~i~~~~-~g~~~~~~~~y~----g~~~~~~l~~fi~~~ 386 (432)
.|++. ..|+.+++. +|.... .+. ...+.+.|++.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence 23443 467888884 554332 221 135678888888764
No 266
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.27 E-value=0.0087 Score=48.52 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 296 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 296 ~~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
.+++++|+|| +.||..|....+.+.++..+++.. ++.|+.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4688899998 789999999999999999999643 68888887654
No 267
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.26 E-value=0.012 Score=42.66 Aligned_cols=54 Identities=13% Similarity=0.354 Sum_probs=38.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~~i~~~P~i~~~~~g~ 362 (432)
+++|+++||+.|..+...+.++.. .+.+..++...+.. ...+..++|.+ |-+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 578999999999999998888743 35566666654421 22467788986 44554
No 268
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.26 E-value=0.024 Score=49.61 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=61.5
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc------ccccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL- 243 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~- 243 (432)
+++||... +.|+.+.+.++.++.+|.=.+..+.+|+... .....+.+.+|+... |++++++.+++..+..
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECCCCeEEEEe
Confidence 55666666 8899999999999999977788888875410 013467888999866 9999998887666665
Q ss_pred CCCCCHHHHHH
Q 013976 244 DGELTLDKIKT 254 (432)
Q Consensus 244 ~~~~~~~~i~~ 254 (432)
.|-++.+.|.+
T Consensus 202 ~G~~s~~~L~~ 212 (215)
T PF13728_consen 202 QGFMSLDELED 212 (215)
T ss_pred eecCCHHHHHH
Confidence 57788877754
No 269
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.24 E-value=0.0089 Score=43.41 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=54.2
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 377 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 377 (432)
.|++|..++|.-|..+..++..++.. ..+.+-.+|++.++. .+|+. .+|.+.+=..+... ......+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence 37889999999999988777765322 258899999997776 67774 79986554322211 123566789999
Q ss_pred HHHHHHH
Q 013976 378 ALYKFLK 384 (432)
Q Consensus 378 ~l~~fi~ 384 (432)
.|.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 270
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.22 E-value=0.0082 Score=42.45 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=44.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---cCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---RAKSDGFPTILFFPAGNKSFDPINVDVDRT 375 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~ 375 (432)
+.+|..++|+.|...+..|.+. ++.+..+|++.+.. . ..+..++|.+++ +|.. +-|+.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~------~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL------SWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc------EEeccC
Confidence 3578899999999998888753 57788888887664 2 346778999755 3432 233466
Q ss_pred HHHHHH
Q 013976 376 VVALYK 381 (432)
Q Consensus 376 ~~~l~~ 381 (432)
.+.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 665544
No 271
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.13 E-value=0.023 Score=47.98 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=84.4
Q ss_pred CceEEEe-cccchhhhhcC--CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-ccCCCCCCce
Q 013976 279 GDVKIVV-GNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 354 (432)
Q Consensus 279 ~~v~~l~-~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~~~~i~~~P~ 354 (432)
+.|..++ +..|-+.+... ....+|..|-+.-..|..+...+.=||..|.. ++|.++-.+.-.. .+|....+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccccchhhhcccCCce
Confidence 4566665 58888877433 23567888999999999999999999998875 9999998666555 7899999999
Q ss_pred EEEEeCCCcccCceecc----CCCCHHHHHHHHHhcCCC
Q 013976 355 ILFFPAGNKSFDPINVD----VDRTVVALYKFLKKNASI 389 (432)
Q Consensus 355 i~~~~~g~~~~~~~~y~----g~~~~~~l~~fi~~~~~~ 389 (432)
+++|++|..+.+.+... .......+.+||+.+.-.
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 99999998775444433 256778899999987643
No 272
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.11 E-value=0.027 Score=45.24 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC---ceEEEEEecCCcc----------------------cccchhhhh
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----------------------VGKPVSEYF 220 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~---~i~f~~vd~~~~~----------------------~~~~l~~~~ 220 (432)
.++..++.|+++| +.|+...+.+.++++++++ .+.++.++.+... ....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3556778889999 9999999999999998875 3666666555421 011344568
Q ss_pred CCCCCCCcEEEEEeCCC
Q 013976 221 GITGEAPKVLAYTGNDD 237 (432)
Q Consensus 221 ~i~~~~~P~i~i~~~~~ 237 (432)
++... |++++++.++
T Consensus 96 ~v~~i--Pt~~lid~~G 110 (132)
T cd02964 96 KVEGI--PTLVVLKPDG 110 (132)
T ss_pred CCCCC--CEEEEECCCC
Confidence 88777 9998886543
No 273
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.09 E-value=0.011 Score=50.74 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=57.8
Q ss_pred CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--------------c-------------ccCC
Q 013976 297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------H-------------HRAK 348 (432)
Q Consensus 297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--------------~-------------~~~~ 348 (432)
++.+||+|| +.||..|....+.|.++...+... ++.++-|.++... . ..|+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 578999999 999999999999999999998753 4555555544210 0 1345
Q ss_pred CC------CCceEEEE-eCCCcccCceecc-C--CCCHHHHHHHHHhc
Q 013976 349 SD------GFPTILFF-PAGNKSFDPINVD-V--DRTVVALYKFLKKN 386 (432)
Q Consensus 349 i~------~~P~i~~~-~~g~~~~~~~~y~-g--~~~~~~l~~fi~~~ 386 (432)
+. ..|+.+++ ++|... .+... . .++.+.|++.|...
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~--~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQ--AVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEE--EEEEeCCCCCCCHHHHHHHHHHh
Confidence 54 35888888 455443 22111 1 45888888887543
No 274
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.031 Score=42.93 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=71.3
Q ss_pred ccchhhhhc-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 013976 287 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 363 (432)
Q Consensus 287 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~~~g~~ 363 (432)
...++.+.. ..+.+++-|-..|.+.|..+-..+.+++...++ -..++-+|+++-.. +-+.+...|++.+|-+++.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 444555533 347889999999999999999999999999998 57888888886665 6789999999999976654
Q ss_pred cc------CceeccC-CCCHHHHHHHHHhcC
Q 013976 364 SF------DPINVDV-DRTVVALYKFLKKNA 387 (432)
Q Consensus 364 ~~------~~~~y~g-~~~~~~l~~fi~~~~ 387 (432)
.. .--.+.+ -.+.+.+++.++-.-
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 21 0001222 245677777666543
No 275
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.05 E-value=0.012 Score=41.62 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=35.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTI 355 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i 355 (432)
+++|+.+||+.|+.+...|++. ++.+..+|+..++. + ..+-..+|.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6789999999999998888864 57777888887664 1 2355678887
No 276
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.02 E-value=0.013 Score=41.72 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=37.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc----CCCC-CCceEEEEeCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSD-GFPTILFFPAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~----~~i~-~~P~i~~~~~g~ 362 (432)
+++|..+||+.|..+...|.+. ++.+..+|++.+.. +. .+.. ++|.+ |-+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCE
Confidence 5789999999999988888764 46777788877643 22 3444 88976 44553
No 277
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.02 E-value=0.011 Score=45.00 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred CceEEEecccchhhhhcCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCce
Q 013976 279 GDVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 354 (432)
Q Consensus 279 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~ 354 (432)
.....++..+++.++ ......+++|.... |..|....-++-+|.+.+.+ .+..+.+....... .+|++..+|+
T Consensus 9 ~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 9 HGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp -TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred cCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 346788999999987 44555555555432 45556666688899888988 57777777222222 6899999999
Q ss_pred EEEEeCCCcc
Q 013976 355 ILFFPAGNKS 364 (432)
Q Consensus 355 i~~~~~g~~~ 364 (432)
++++++|..+
T Consensus 86 Lvf~R~g~~l 95 (107)
T PF07449_consen 86 LVFFRDGRYL 95 (107)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9999999765
No 278
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.00 E-value=0.0089 Score=43.12 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=36.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN 362 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~ 362 (432)
+++|+.+||+.|......|.+. ++.+..+|++.+.. + ..+..++|++ |-+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 4678999999999999888764 45666667766543 2 2356789997 44453
No 279
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.98 E-value=0.058 Score=48.23 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=67.5
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL- 243 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~- 243 (432)
+++||... +.|+++.+.++.++.+|.=.+..+.+|+.... ....+++.+|+... |++++++.+.+..++.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECCCCcEEEEe
Confidence 55666665 88999999999999999988888888887421 11346778899776 9999998887776665
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 013976 244 DGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 244 ~~~~~~~~i~~fi~~~~~ 261 (432)
.|-++.++|.+=+.....
T Consensus 232 ~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 232 YGFISQDELKERILNVLT 249 (256)
T ss_pred eccCCHHHHHHHHHHHHh
Confidence 578899888766665544
No 280
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=95.93 E-value=0.069 Score=39.80 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=55.8
Q ss_pred eEEEEEeC---cchhhhHHHHHHHHHhcc------C--ceEEEEEecCCcccccchhhhh-CCCCCCCcEEEEEeCCCCc
Q 013976 172 QLLLFAVS---NDSEKLLPVFEEAAKSFK------G--KLIFVYVQMDNEDVGKPVSEYF-GITGEAPKVLAYTGNDDAK 239 (432)
Q Consensus 172 ~i~~~~~~---~~~~~~~~~~~~~a~~~~------~--~i~f~~vd~~~~~~~~~l~~~~-~i~~~~~P~i~i~~~~~~~ 239 (432)
.+++|.+. +..+..++.++.+|.++. + ......++.+.+ -.+.++.| ++. ..-|.+++.+-..+.
T Consensus 17 ~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede--~tdsLRDf~nL~-d~~P~LviLDip~r~ 93 (116)
T cd03071 17 CLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD--MTDSLRDYTNLP-EAAPLLTILDMSARA 93 (116)
T ss_pred eEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch--HHHHHHHhcCCC-ccCceEEEEeccccc
Confidence 44455544 346777888888888753 1 122222233332 22344444 554 346999999888888
Q ss_pred eecCC-CCCCHHHHHHHHHHHh
Q 013976 240 KHILD-GELTLDKIKTFGEDFL 260 (432)
Q Consensus 240 ~y~~~-~~~~~~~i~~fi~~~~ 260 (432)
+|.+. .++|.+++.+|+.+|+
T Consensus 94 ~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 94 KYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eEeCchHhcCHHHHHHHHHHhh
Confidence 88885 4799999999999986
No 281
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.89 E-value=0.019 Score=40.55 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=44.4
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-c----cCCCCCCceEEEEeCCCcccCceeccCCC
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDR 374 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-~----~~~i~~~P~i~~~~~g~~~~~~~~y~g~~ 374 (432)
-+++|..+||+.|...+..|.+. ++.+..+|++.+.. . ..+..++|.+ |-+|..+ |
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i-------g-- 62 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI-------G-- 62 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE-------e--
Confidence 36789999999999998777753 46677778776654 1 2367789987 4555432 2
Q ss_pred CHHHHHHHH
Q 013976 375 TVVALYKFL 383 (432)
Q Consensus 375 ~~~~l~~fi 383 (432)
..+.|.+|+
T Consensus 63 g~~~l~~~l 71 (72)
T cd03029 63 GSDDLEKYF 71 (72)
T ss_pred CHHHHHHHh
Confidence 356666664
No 282
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.80 E-value=0.025 Score=46.62 Aligned_cols=68 Identities=26% Similarity=0.569 Sum_probs=44.1
Q ss_pred hcCCCcEEEEEeCCCChhhhhhHH-HH--HHHHHHhcCCCCEEEEEEeCCCccc--ccC--------CCCCCceEEEE-e
Q 013976 294 LDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFPTILFF-P 359 (432)
Q Consensus 294 ~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~la~~~~~~~~~~~~~id~~~~~~--~~~--------~i~~~P~i~~~-~ 359 (432)
...+++++|.++++||.-|+.|.. .| .++|..+.. ++.-+++|.++-++ ..| +..++|+.++. +
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltP 111 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP 111 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECC
Confidence 456799999999999999998874 23 346677766 69999999988776 233 67899999999 5
Q ss_pred CCCc
Q 013976 360 AGNK 363 (432)
Q Consensus 360 ~g~~ 363 (432)
.|+.
T Consensus 112 dg~p 115 (163)
T PF03190_consen 112 DGKP 115 (163)
T ss_dssp TS-E
T ss_pred CCCe
Confidence 5543
No 283
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.79 E-value=0.05 Score=41.60 Aligned_cols=87 Identities=20% Similarity=0.267 Sum_probs=55.9
Q ss_pred chhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC---
Q 013976 160 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND--- 236 (432)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~--- 236 (432)
.+..+.......+|-||....+ .....|.++|..+++...|+..... .+...+++ . |.++++.+.
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~--~~ivl~~p~~~~ 77 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G--EGVVLFRPPRLS 77 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C--CceEEEechhhh
Confidence 3445455444444545544332 4556788999999988999776533 45677777 3 555555321
Q ss_pred ---CCceecCCCCCCHHHHHHHHHH
Q 013976 237 ---DAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 237 ---~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
......|.|.++.+.|.+||..
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHh
Confidence 1233457898999999999986
No 284
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.79 E-value=0.022 Score=44.31 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=43.5
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEE-ecCCcccccchhhhhCCCCCCCcEE
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV-QMDNEDVGKPVSEYFGITGEAPKVL 230 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~v-d~~~~~~~~~l~~~~~i~~~~~P~i 230 (432)
.+++.++.||++| +.|+...+.++++++.+.+.+.++.+ |.+... ...+++.+++... |.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~--p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLEAF--PYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCCCC--cEE
Confidence 3567888899999 99999999999999998776655544 222222 4456777777554 654
No 285
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.77 E-value=0.082 Score=47.01 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=67.6
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc------cccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL- 243 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~- 243 (432)
+++||... +.|+++.+.++.++++|.=.+..+.+|+.... ......+.+|+..+ |++++++.+.+..++.
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPKSGSVRPLS 224 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECCCCcEEEEe
Confidence 55566655 88999999999999999988999999985421 01234567888776 9999998887777665
Q ss_pred CCCCCHHHHHHHHHHHhcC
Q 013976 244 DGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 244 ~~~~~~~~i~~fi~~~~~g 262 (432)
.|-++.++|.+=+.....+
T Consensus 225 ~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 225 YGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred eccCCHHHHHHHHHHHHhc
Confidence 5788998887777666554
No 286
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.76 E-value=0.021 Score=43.24 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=37.5
Q ss_pred cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----cc----CCCCCCceEEEEeCCCc
Q 013976 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HR----AKSDGFPTILFFPAGNK 363 (432)
Q Consensus 299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----~~----~~i~~~P~i~~~~~g~~ 363 (432)
.-++.|..+||++|..+...|.++ ++.+..+|++..+. .. .+..++|.| |-+|+.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~ 71 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL 71 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence 347789999999999998877765 35555667665543 11 246789997 555643
No 287
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.69 E-value=0.14 Score=43.18 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=68.2
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc------c--------------------cccchhh
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------D--------------------VGKPVSE 218 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~------~--------------------~~~~l~~ 218 (432)
.++.+++.|+..| +.|....+.+.++..++.+ ++.|+.+..+.. . ....+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4456677788888 8899999999999999974 588877766431 0 0123456
Q ss_pred hhCCCCCCCcEEEEEeCCCCceecC--C-------CCCCHHHHHHHHHHHhcCCcCc
Q 013976 219 YFGITGEAPKVLAYTGNDDAKKHIL--D-------GELTLDKIKTFGEDFLEGKLKP 266 (432)
Q Consensus 219 ~~~i~~~~~P~i~i~~~~~~~~y~~--~-------~~~~~~~i~~fi~~~~~g~l~~ 266 (432)
.||+... |.+++++.++...|.. . +..+...+.+-|...++|.-.+
T Consensus 104 ~~~v~~~--P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 104 AYGAACT--PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HcCCCcC--CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 7777665 8888887665444331 1 2356788999999999876544
No 288
>PHA03050 glutaredoxin; Provisional
Probab=95.64 E-value=0.027 Score=43.33 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=34.5
Q ss_pred cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------ccCCCCCCceE
Q 013976 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTI 355 (432)
Q Consensus 299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------~~~~i~~~P~i 355 (432)
.-+++|..+||++|......|.++.-.. -.+..+|++.... ..-+..++|.|
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 3478899999999999988887762211 1455566665322 12366789998
No 289
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.64 E-value=0.048 Score=41.24 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=49.0
Q ss_pred eeeCCHHHHHHHhhc--CCeEEEEEecCCCcc---hHHHHHHHhccCC-CceEEEe-------CcHHHHhHcCCCCCCCC
Q 013976 49 YNITTLDEAERVLTS--ETKVVLGYLNSLVGS---ESEVLADASRLED-DVNFYQT-------TNPDVAKIFHLDSKVNR 115 (432)
Q Consensus 49 ~~i~~~~~l~~~~~~--~~~~vv~f~~~~~~~---~~~~f~~~a~~~~-~~~F~~~-------~~~~~~~~~~~~~~~~~ 115 (432)
..|++.++++++++. .+.++|.=-+..|+- .++.|........ .+.+++. -+..++..+||..+ .
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He--S 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE--S 79 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC--C
Confidence 368899999999986 555555434555653 4566666553333 3767662 26678999999873 6
Q ss_pred CeEEEEecCCCceeccc--CCCCCHHHH
Q 013976 116 PALVMVKKETEKISYFA--DGKFDKSTI 141 (432)
Q Consensus 116 p~i~l~~~~~~~~~~y~--~g~~~~~~l 141 (432)
|.++|++++. ..|+ +..++.+.|
T Consensus 80 PQ~ili~~g~---~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGK---VVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTE---EEEEEEGGG-SHHHH
T ss_pred CcEEEEECCE---EEEECccccCCHHhc
Confidence 9999999643 3442 456666665
No 290
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.56 E-value=0.037 Score=46.13 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred HHHHHhcCCCceeecC-CCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhh
Q 013976 142 ADFVFSNKLPLVTIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY 219 (432)
Q Consensus 142 ~~fi~~~~~p~v~~l~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~ 219 (432)
..|+. .-+.-+.++. ...|-........+++.||.+. ..|+-+-..++.+|+++-+ ..|+.||+.. .+-++..
T Consensus 58 ~~~~~-~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~---~PFlv~k 132 (211)
T KOG1672|consen 58 KEWLS-KGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK---APFLVTK 132 (211)
T ss_pred HHHHH-cCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc---Cceeeee
Confidence 34443 3344566665 4455555556667888899998 8999999999999999999 8999999998 5688999
Q ss_pred hCCCCCCCcEEEEEeCCCCceec--CC--C---CCCHHHHHHHHHH
Q 013976 220 FGITGEAPKVLAYTGNDDAKKHI--LD--G---ELTLDKIKTFGED 258 (432)
Q Consensus 220 ~~i~~~~~P~i~i~~~~~~~~y~--~~--~---~~~~~~i~~fi~~ 258 (432)
++|.-. |+++++-++.-.-|. |. | +++.+.|..=+..
T Consensus 133 L~IkVL--P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 133 LNIKVL--PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred eeeeEe--eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 999887 999999776532222 21 2 4677777665544
No 291
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.54 E-value=0.092 Score=45.09 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=58.9
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCC---------------cccccchhhhhCCCCCCCcEE
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN---------------EDVGKPVSEYFGITGEAPKVL 230 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~---------------~~~~~~l~~~~~i~~~~~P~i 230 (432)
.+++.++.|+++| +.|+...+.+.++.+++.-++.++..|..+ ......+.+.||+... |+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--PYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--ceE
Confidence 4557788899999 999999999999887765445544421100 0012345567777665 888
Q ss_pred EEEeCCCCceecCCCC-CCHHHHHHHHHHHhcC
Q 013976 231 AYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEG 262 (432)
Q Consensus 231 ~i~~~~~~~~y~~~~~-~~~~~i~~fi~~~~~g 262 (432)
++++.++...+ .|. .+.+.+.+.++....|
T Consensus 151 ~lID~~G~I~~--~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 151 VLLDQDGKIRA--KGLTNTREHLESLLEADREG 181 (189)
T ss_pred EEECCCCeEEE--ccCCCCHHHHHHHHHHHHcC
Confidence 88876543333 343 4667888888776554
No 292
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.48 E-value=0.051 Score=44.24 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC--------ceEEEEEecCCcc-------------c---------ccc
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNED-------------V---------GKP 215 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~--------~i~f~~vd~~~~~-------------~---------~~~ 215 (432)
.++++++.|+++| +.|....+.+.++..++++ ++.++.|+.+... + ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 3567788899999 9999999999998877653 3777777766421 0 013
Q ss_pred hhhhhCCCCCCCcEEEEEeCC
Q 013976 216 VSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 216 l~~~~~i~~~~~P~i~i~~~~ 236 (432)
+...|++.+. |+.++++.+
T Consensus 104 l~~~y~v~~i--Pt~vlId~~ 122 (146)
T cd03008 104 LEAQFSVEEL--PTVVVLKPD 122 (146)
T ss_pred HHHHcCCCCC--CEEEEECCC
Confidence 4455666554 888888655
No 293
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.47 E-value=0.11 Score=46.12 Aligned_cols=95 Identities=6% Similarity=-0.098 Sum_probs=63.5
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc-----c---cccchh-hhhCCCC-----------
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----D---VGKPVS-EYFGITG----------- 224 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~-----~---~~~~l~-~~~~i~~----------- 224 (432)
.++.++|.||+.| +.|....+.+.++.++|+++ +.++.|+++.. + ....++ +.+|+.-
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3567788899999 99999999999999999864 77777776421 0 012222 2222210
Q ss_pred ---------------------CCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhc
Q 013976 225 ---------------------EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 225 ---------------------~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~ 261 (432)
...|+.++++.++...+.+.|..+.+.|.+.|+.+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 0024555666555555667788889999999988774
No 294
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.45 E-value=0.12 Score=39.38 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCchhhhcc-CCCcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976 158 RENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 158 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~ 236 (432)
.+.+..+.. .....+|-+|....+ .....|.++|..++....|+.... ..+...+++. .|.++++...
T Consensus 8 ~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~------~~~~~~~~~~---~~~i~l~~~~ 76 (102)
T cd03066 8 ERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFD------SKVAKKLGLK---MNEVDFYEPF 76 (102)
T ss_pred HHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECc------HHHHHHcCCC---CCcEEEeCCC
Confidence 344566665 443444445543332 455678999999998889976553 2456666664 3767777542
Q ss_pred CCceecC-CCCCCHHHHHHHHHHH
Q 013976 237 DAKKHIL-DGELTLDKIKTFGEDF 259 (432)
Q Consensus 237 ~~~~y~~-~~~~~~~~i~~fi~~~ 259 (432)
......| .|..+.+.|.+||...
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHh
Confidence 2233457 7788999999999763
No 295
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.35 E-value=0.1 Score=41.41 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEec
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM 207 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~ 207 (432)
.+++.++.||+.| +.|....+.+.++.+++++ .+.++.+..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4567788889999 8999999999999999985 466666654
No 296
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.25 E-value=0.17 Score=44.92 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEE--eC----------------CC----------------
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM--DG----------------TT---------------- 341 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~i--d~----------------~~---------------- 341 (432)
+.+.+++.|..+.|++|+++.+.+.++... ++.+..+ .. ..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 457789999999999999998888776431 1222111 11 00
Q ss_pred -----ccc-------ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhc
Q 013976 342 -----NEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 386 (432)
Q Consensus 342 -----~~~-------~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 386 (432)
++. .+++|+++|+++ +++|. ...|..+.+.|.++|.++
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCe------EeeCCCCHHHHHHHHHHc
Confidence 000 245999999999 77775 457888999999999864
No 297
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.14 E-value=0.11 Score=44.87 Aligned_cols=96 Identities=7% Similarity=-0.098 Sum_probs=62.0
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCC--------cccccchhhhhCCCC------------
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEYFGITG------------ 224 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~--------~~~~~~l~~~~~i~~------------ 224 (432)
.++.+++.|+++| +.|....+.+.++.++|.++ +.++.+.++. .+-...+++.+|+.-
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 3567778889999 89999999999999999864 7888887632 111233445444410
Q ss_pred --------------------C--CCc---EEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 225 --------------------E--APK---VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 225 --------------------~--~~P---~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
. ..| +.++++.++...+.+.|..+.+.+.+.|+..++.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 0 001 2334444443445556777888888888887763
No 298
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.14 E-value=0.012 Score=50.52 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=78.5
Q ss_pred ceeecCCCchhhhccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCCCCCCcE
Q 013976 152 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 229 (432)
Q Consensus 152 ~v~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~ 229 (432)
.+..++.+|...++.. .++++|+++| +.|+...+.|...|.--.+ .+.++.||... ++.+.-+|-+... |+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~---npgLsGRF~vtaL--pt 97 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT---NPGLSGRFLVTAL--PT 97 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe---ccccceeeEEEec--ce
Confidence 5778889998887653 6789999999 9999999999998887666 58999999998 6677777766555 77
Q ss_pred EEEEeCCCCceecCCCCCCHHHHHHHHHH
Q 013976 230 LAYTGNDDAKKHILDGELTLDKIKTFGED 258 (432)
Q Consensus 230 i~i~~~~~~~~y~~~~~~~~~~i~~fi~~ 258 (432)
|--. ..+..-.|.|.++..++..|+..
T Consensus 98 IYHv--kDGeFrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 98 IYHV--KDGEFRRYSGARDKNDFISFEEH 124 (248)
T ss_pred EEEe--eccccccccCcccchhHHHHHHh
Confidence 7433 34455567999999999999987
No 299
>PRK10638 glutaredoxin 3; Provisional
Probab=94.94 E-value=0.049 Score=39.65 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=35.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 357 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~ 357 (432)
+++|..+||+.|...+..+++. ++.+..+|++.+.. . ..+..++|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6688899999999998888765 46677788877653 1 235668897733
No 300
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.059 Score=38.92 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=37.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------ccC-CCCCCceEEE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRA-KSDGFPTILF 357 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-------~~~-~i~~~P~i~~ 357 (432)
+++|..++|++|+.....|.+. ++.+..+|++.... ... +..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6788999999999988877744 57777777777763 122 6789998765
No 301
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.86 E-value=0.15 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHH
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNK 321 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~ 321 (432)
.+..++.|+.+.|++|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5789999999999999999888775
No 302
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.82 E-value=0.11 Score=42.41 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=54.9
Q ss_pred CCCcceEEEEEe-C-cchhhhHHHHHHHHHhccCc-eEEEEEecCCcc------------------cccchhhhhCCC--
Q 013976 167 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGIT-- 223 (432)
Q Consensus 167 ~~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~i~-- 223 (432)
.+++.+|.||.. | +.|....+.+.+++++|+++ +.++.+...... -...+.+.||+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 456778889999 9 99999999999999997754 666666544332 123566777866
Q ss_pred -------CCCCcEEEEEeCCCCceecCCCC
Q 013976 224 -------GEAPKVLAYTGNDDAKKHILDGE 246 (432)
Q Consensus 224 -------~~~~P~i~i~~~~~~~~y~~~~~ 246 (432)
.. |++++++.++...|...|.
T Consensus 107 ~~~~~~~~~--P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGI--PTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSS--SEEEEEETTSBEEEEEESS
T ss_pred cccccCCee--cEEEEEECCCEEEEEEeCC
Confidence 44 8888887776555554443
No 303
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.78 E-value=0.067 Score=45.73 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=59.8
Q ss_pred CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---------------------------ccCC
Q 013976 297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAK 348 (432)
Q Consensus 297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---------------------------~~~~ 348 (432)
++.++++|| +.||..|....+.|.++...+... ++.+.-|+++.... ..|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 468888988 999999999999999999999753 45555555543110 2345
Q ss_pred C----CCC--ceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhcC
Q 013976 349 S----DGF--PTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKNA 387 (432)
Q Consensus 349 i----~~~--P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~~ 387 (432)
+ .+. |+.+++- +|... ....+ ...++.+.+++.|+..-
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~-~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQ-AIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHhhh
Confidence 4 245 9999994 55432 11112 12578999999886544
No 304
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.77 E-value=0.069 Score=40.22 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=35.1
Q ss_pred CCcEEEEEe----CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEE
Q 013976 297 SKDVLLEIY----APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTIL 356 (432)
Q Consensus 297 ~~~~lv~f~----~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~ 356 (432)
+.+++|+-. +|||++|......|.++ ++.+..+|+..+.. . .-+..++|.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 345555544 38999999998888776 46677788876544 1 23556788873
No 305
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.64 E-value=0.059 Score=40.79 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=53.8
Q ss_pred cccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CCceEEE
Q 013976 286 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFPTILF 357 (432)
Q Consensus 286 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~P~i~~ 357 (432)
.+.+++++... .++++++=+++.|+-.......|++......+ .+.++.+|+-+... .+++|. .-|.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 35677766443 58899999999999998888888888777766 49999999887765 467888 5799999
Q ss_pred EeCCCcc
Q 013976 358 FPAGNKS 364 (432)
Q Consensus 358 ~~~g~~~ 364 (432)
+++|+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 9999874
No 306
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.61 E-value=0.17 Score=36.04 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=51.3
Q ss_pred EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCC-CCCHHHH
Q 013976 175 LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKI 252 (432)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~-~~~~~~i 252 (432)
++.++ +.|......+++++..+ + +.+-.+|... .+.+ ..||+... |++++. + ...+.| ..+.+.|
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~---~~~~-~~ygv~~v--PalvIn--g---~~~~~G~~p~~~el 71 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIED---FEEI-EKYGVMSV--PALVIN--G---KVVFVGRVPSKEEL 71 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTT---HHHH-HHTT-SSS--SEEEET--T---EEEEESS--HHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccC---HHHH-HHcCCCCC--CEEEEC--C---EEEEEecCCCHHHH
Confidence 36667 89999999999999999 4 7777778754 4465 89999988 999663 1 345667 6788889
Q ss_pred HHHHH
Q 013976 253 KTFGE 257 (432)
Q Consensus 253 ~~fi~ 257 (432)
..|++
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88874
No 307
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=94.60 E-value=0.23 Score=38.76 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc---
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK--- 239 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~--- 239 (432)
+++..+|+++.+. +++..+-. .| .++.+-++.++.+...|+...+ +..++..+++..+ |.++++....++
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~--P~~~~l~~~~~~~~v 92 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY--PFLAMIMLKDNRMTI 92 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC--CEEEEEEecCCceEE
Confidence 4444455566553 33333321 11 2244445567888888998776 7889999999988 999988543322
Q ss_pred eecCCCCCCHHHHHHHHHHHhc
Q 013976 240 KHILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 240 ~y~~~~~~~~~~i~~fi~~~~~ 261 (432)
.....|.++++.+...+..+..
T Consensus 93 v~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 93 VGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh
Confidence 3356899999999998887654
No 308
>PRK15000 peroxidase; Provisional
Probab=94.43 E-value=0.086 Score=45.67 Aligned_cols=89 Identities=7% Similarity=0.113 Sum_probs=61.4
Q ss_pred CCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------------------------------
Q 013976 296 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------ 344 (432)
Q Consensus 296 ~~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------------------------------ 344 (432)
.++.++|+||+ .||..|..-.+.|.+++..|+.. ++.+..+.++....
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 46789999999 59999999999999999999864 56666666663110
Q ss_pred ccCCCC------CCceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhc
Q 013976 345 HRAKSD------GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN 386 (432)
Q Consensus 345 ~~~~i~------~~P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~ 386 (432)
..|++. ..|+.+++. +|... ....+ .-+++.+.++..|+..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 124555 588888885 55432 11111 1267899999988753
No 309
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.42 E-value=0.79 Score=34.39 Aligned_cols=105 Identities=12% Similarity=-0.006 Sum_probs=74.5
Q ss_pred EEEecccchhhhhcC-CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCC-CCc
Q 013976 282 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP 353 (432)
Q Consensus 282 ~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~P 353 (432)
.+|+..+.-+...++ ++..+|-|--+-...-.+|.+++.++|+.+..++++.|+.||-+.-+. ..|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 345555555555333 467888888888888899999999999999998999999999988876 245554 359
Q ss_pred eEEEEeCCCcccCceeccC---CCCHHHHHHHHHhc
Q 013976 354 TILFFPAGNKSFDPINVDV---DRTVVALYKFLKKN 386 (432)
Q Consensus 354 ~i~~~~~g~~~~~~~~y~g---~~~~~~l~~fi~~~ 386 (432)
.|-+..-.....-=....+ ..+++.|.+||++.
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 9888754433110012223 37889999999875
No 310
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.39 E-value=0.092 Score=38.91 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=37.3
Q ss_pred CCcEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEEEEeCCC
Q 013976 297 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGN 362 (432)
Q Consensus 297 ~~~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~~~~~g~ 362 (432)
+.+++|+-.+ |||+.|......|.+. ++.+..+|+..+.. ...+-.++|.| |-+|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence 3566665443 7999999988887776 46677777765543 12366789997 44554
No 311
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.39 E-value=0.18 Score=40.06 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=42.5
Q ss_pred ccCCCcceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCc
Q 013976 165 FESPIKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 239 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~ 239 (432)
-..+++++|.|+++| +.|+.+...+- ++++..+..+..+.++.+..+ .. ....| ...|++++++.+...
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td--~~-~~~~g---~~vPtivFld~~g~v 92 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD--KN-LSPDG---QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC--CC-cCccC---cccCeEEEECCCCCC
Confidence 456778888889999 99999876432 344445445555566654321 11 11123 346999999877533
No 312
>PLN02412 probable glutathione peroxidase
Probab=94.38 E-value=0.21 Score=41.94 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=33.8
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 208 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~ 208 (432)
.++..++.|++.| +.|....+.+.++.++|+++ +.++.|.++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3456677788999 88888899999999999964 777777764
No 313
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.37 E-value=0.05 Score=39.49 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=45.6
Q ss_pred ccCCCcceEEEEEeC-cchhhhHHHH---HHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeC
Q 013976 165 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 165 ~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~ 235 (432)
-.++++.+|.|+++| ..|+.+...+ .++...+..++.++.+|.+..+ ......+ .+ +|+++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~-~~--~P~~~~ldp 82 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR-QG--YPTFFFLDP 82 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH-CS--SSEEEEEET
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC-cc--CCEEEEeCC
Confidence 356778888899999 9999998766 4455556677999999998743 2222222 33 599998853
No 314
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.13 E-value=0.12 Score=51.09 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=73.5
Q ss_pred ecCCC-chhhhccCCC--cceEEEEEeC-cchhhhHHHHH---HHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCC
Q 013976 155 IFTRE-NAPSVFESPI--KNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEA 226 (432)
Q Consensus 155 ~l~~~-~~~~~~~~~~--~~~i~~~~~~-~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~ 226 (432)
.+++. ..++...+++ ++.+-||++| -.|+.+++..- +++.+..+ +....+|.++.+ -..+++++||+-+.
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~- 535 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV- 535 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-
Confidence 34444 4555555555 7788899999 89999865332 24444445 888999998742 24567788888776
Q ss_pred CcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 227 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 227 ~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
|++++++.+...+-...|-++.+.+.+++++.
T Consensus 536 -P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 -PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999986666665678899999999999874
No 315
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.96 E-value=0.19 Score=37.19 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=28.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 339 (432)
++.|+.+.|++|..+.+.+.++.....+ ++.+.....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEecc
Confidence 4679999999999999999999855555 455555543
No 316
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.71 E-value=0.13 Score=44.73 Aligned_cols=90 Identities=8% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCcEE-EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc------------------c-----------cc
Q 013976 297 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------H-----------HR 346 (432)
Q Consensus 297 ~~~~l-v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~------------------~-----------~~ 346 (432)
++.++ ++|++.||..|..-.+.|.++...+++. ++.+..+.++... . ..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 45454 4689999999999999999999999753 5666666555210 0 12
Q ss_pred CCCC------CCceEEEEeCCCcccCcee-c--cCCCCHHHHHHHHHhcCC
Q 013976 347 AKSD------GFPTILFFPAGNKSFDPIN-V--DVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 347 ~~i~------~~P~i~~~~~g~~~~~~~~-y--~g~~~~~~l~~fi~~~~~ 388 (432)
|++. .+|+++++.++..+ +.+. | .+.++.++++..|+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I-~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIV-RWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 3553 47999999544444 2211 2 346899999999886653
No 317
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.60 E-value=0.63 Score=36.54 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=64.5
Q ss_pred ccchhhhh-cCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE-eCCC
Q 013976 287 NNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF-PAGN 362 (432)
Q Consensus 287 ~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~-~~g~ 362 (432)
...++.+. +.++.+++-|-..|-..|-++-.++.++|...++ -..++.+|+++-+. .-|.+. -|.-++| -+++
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 44555554 4458899999999999999999999999999998 69999999997766 567777 7765544 3443
Q ss_pred ccc------CceeccC-CCCHHHHHHHHHh
Q 013976 363 KSF------DPINVDV-DRTVVALYKFLKK 385 (432)
Q Consensus 363 ~~~------~~~~y~g-~~~~~~l~~fi~~ 385 (432)
... +-....+ -.+.+.+++.++-
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 320 0012233 3456777666654
No 318
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.55 E-value=0.36 Score=32.00 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=42.4
Q ss_pred EEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchh---hhhCCCCCCCcEEEEEeCC
Q 013976 173 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS---EYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 173 i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~---~~~~i~~~~~P~i~i~~~~ 236 (432)
++|+..+ +.|+...+.+.++ ......+.+..+++.... ... ..+++... |++++.+.+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--P~~~~~~~~ 63 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV--PTLVVFGPG 63 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc--cEEEEEeCC
Confidence 5667777 8999999999988 445566999999998743 323 25566655 999888654
No 319
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.35 E-value=0.19 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id 338 (432)
.+..++.|+.++|++|..+.+.+.++...+.+ +.+...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~ 43 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD---VRVVFKE 43 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC---ceEEEEe
Confidence 46789999999999999999999998776643 4454444
No 320
>PRK10824 glutaredoxin-4; Provisional
Probab=93.30 E-value=0.14 Score=39.76 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=33.4
Q ss_pred CCcEEEEEeC----CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCC
Q 013976 297 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGN 362 (432)
Q Consensus 297 ~~~~lv~f~~----~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~----~~~i~~~P~i~~~~~g~ 362 (432)
+.+++|+--+ |||+.|......|..+ ++.+..+|+..+.. . .-+-.++|.| |-+|.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~--------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGE 79 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc--------CCCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 3555555443 6999999998888776 24444566655433 1 1244566664 44554
No 321
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.23 E-value=0.14 Score=44.43 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=34.0
Q ss_pred cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
.+|++|++.||..|....+.|.+++..+++. ++.++-++++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 4566889999999999999999999999763 56677666654
No 322
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.12 E-value=0.17 Score=44.29 Aligned_cols=88 Identities=8% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCcE-EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976 297 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 346 (432)
Q Consensus 297 ~~~~-lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~ 346 (432)
++.+ |++|++.||..|....+.|.+++..|+.. ++.++-++++.... ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4444 45889999999999999999999999753 56666666653221 12
Q ss_pred CCC-------CCCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhc
Q 013976 347 AKS-------DGFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKN 386 (432)
Q Consensus 347 ~~i-------~~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~ 386 (432)
|++ ...|+.+++.....+ +.+. +. .+++.+.++..|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTV-RLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 233 236888888544444 2222 22 267999999998754
No 323
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.10 E-value=0.17 Score=44.36 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=60.2
Q ss_pred CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976 297 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 346 (432)
Q Consensus 297 ~~~-~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~ 346 (432)
++. +|++|++.||..|..-.+.|.++...|.+. ++.++-++++.... ..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 344 567899999999999999999999999753 56666666664210 12
Q ss_pred CCC-------CCCceEEEEeCCCcccCcee-cc--CCCCHHHHHHHHHhc
Q 013976 347 AKS-------DGFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKN 386 (432)
Q Consensus 347 ~~i-------~~~P~i~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~ 386 (432)
|++ ...|+++++.....+ +.+. |. ..++.+.|++.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~I-r~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTI-RLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEE-EEEEEcCCCCCCCHHHHHHHHHHh
Confidence 344 257999999544444 2332 22 257889999998754
No 324
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=93.09 E-value=0.21 Score=45.01 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc-----------------cc-------------c
Q 013976 297 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------EH-------------H 345 (432)
Q Consensus 297 ~~~~lv~f~-~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~-----------------~~-------------~ 345 (432)
++.+|++|| +.||..|..-.+.|.++...+++. ++.+.-|.++.- .. .
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 456666666 899999999999999999999753 455555555441 00 1
Q ss_pred cCCCC-----CCceEEEEe-CCCcccCceec--cCCCCHHHHHHHHHhc
Q 013976 346 RAKSD-----GFPTILFFP-AGNKSFDPINV--DVDRTVVALYKFLKKN 386 (432)
Q Consensus 346 ~~~i~-----~~P~i~~~~-~g~~~~~~~~y--~g~~~~~~l~~fi~~~ 386 (432)
.|++. ..|+.+++. +|... ....+ ..+++.++++..|...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~-~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVK-HVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence 23553 479999995 55432 11112 2367899999888644
No 325
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.86 E-value=0.76 Score=37.81 Aligned_cols=41 Identities=5% Similarity=0.001 Sum_probs=34.3
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEec
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM 207 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~ 207 (432)
.+++++|.++++| +.|....+.+.+++++|++ .+.++.+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3556678888999 9999999999999999985 488888875
No 326
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.51 E-value=0.27 Score=42.60 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 297 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 297 ~~~~lv~f~~-~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
++.++|+||+ .||..|....+.+.+++..|... ++.++.|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence 5678889995 78999988888999999999864 67777777663
No 327
>PRK13189 peroxiredoxin; Provisional
Probab=92.39 E-value=0.23 Score=43.74 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=57.8
Q ss_pred CC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc-----------------------------cc
Q 013976 297 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 346 (432)
Q Consensus 297 ~~-~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~-----------------------------~~ 346 (432)
++ .+|++|++.||..|....+.|.+++..|++. ++.++.+.++.... ..
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 44 4556788999999999999999999999753 45565555543110 12
Q ss_pred CCCC-------CCceEEEEeCCCcccCceec---cCCCCHHHHHHHHHhc
Q 013976 347 AKSD-------GFPTILFFPAGNKSFDPINV---DVDRTVVALYKFLKKN 386 (432)
Q Consensus 347 ~~i~-------~~P~i~~~~~g~~~~~~~~y---~g~~~~~~l~~fi~~~ 386 (432)
|++. ..|+.+++.....+ +.+.+ ...++.+.++..|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGII-RAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 3432 56888888544444 22222 2467889999988754
No 328
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.07 E-value=2.2 Score=33.11 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=64.4
Q ss_pred CCCcceEEEE-EeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecC-
Q 013976 167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL- 243 (432)
Q Consensus 167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~- 243 (432)
+....+++=| .+| +.|.++-..+.++|+...+-..+..+|.++ -+.+.+.|++... |+++++-+++.-+..+
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~p--~tvmfFfn~kHmkiD~g 95 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYDP--PTVMFFFNNKHMKIDLG 95 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccCC--ceEEEEEcCceEEEeeC
Confidence 3334444444 444 789999999999999999988888999987 5688899999765 7666554443222222
Q ss_pred CCC--------CCHHHHHHHHHHHhcCCc
Q 013976 244 DGE--------LTLDKIKTFGEDFLEGKL 264 (432)
Q Consensus 244 ~~~--------~~~~~i~~fi~~~~~g~l 264 (432)
.|+ -+.+.+.+-++-...|-.
T Consensus 96 tgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 96 TGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 222 357778888877766554
No 329
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.04 E-value=0.56 Score=36.78 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.6
Q ss_pred CCCcceEEEEEe-C-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc
Q 013976 167 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE 210 (432)
Q Consensus 167 ~~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~ 210 (432)
.+++.+|.||.. | +.|....+.+.++..+++. .+.++.+..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 456778888888 7 8999999999999999985 478877776553
No 330
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.00 E-value=0.93 Score=34.76 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=53.2
Q ss_pred CchhhhccCC-CcceEEEEEeCcchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC
Q 013976 159 ENAPSVFESP-IKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 237 (432)
Q Consensus 159 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~ 237 (432)
+.+..+.... ...+|-+|....+ .....|.++|..+++...|+..... .+...+++.. |.++++.+..
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~ 77 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEK 77 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHH
Confidence 3344544444 3444445544322 3556788999999998999776533 4567777753 4455664433
Q ss_pred C------ceecCCCC-CCHHH-HHHHHHH
Q 013976 238 A------KKHILDGE-LTLDK-IKTFGED 258 (432)
Q Consensus 238 ~------~~y~~~~~-~~~~~-i~~fi~~ 258 (432)
. ....|.|. .+.+. |..|+++
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 1 22345665 56655 9999975
No 331
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.81 E-value=0.59 Score=38.68 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 339 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~ 339 (432)
.+.+|+.|....|++|..+.+.+.++.+.+-+..++.|...+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4678999999999999999999999999983333788888776
No 332
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.76 E-value=0.96 Score=34.39 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC-CcccccchhhhhC--CCCCCCcEEEEEeCCC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFG--ITGEAPKVLAYTGNDD 237 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~-~~~~~~~l~~~~~--i~~~~~P~i~i~~~~~ 237 (432)
+.+.++.||++| +.|+.+.+.+.+++.++...+.+..+|.. . .+.+...++ +... |.+.++..+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSI--PTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccC--CeEEEEeCcc
Confidence 334555567888 99999999999999999988899999986 3 457788888 6666 8887654443
No 333
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=91.72 E-value=0.82 Score=31.74 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=47.9
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 249 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~ 249 (432)
+.+|+.+| +.|+...+.+.+. .+.+..+|.+... ....+++.+|+... |++++. + +. +.| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~--~--~~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG--H--KI--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC--C--EE--Eee-CCH
Confidence 45677788 9999988777652 3778888887632 01235667888776 999763 2 22 445 688
Q ss_pred HHHHHHHH
Q 013976 250 DKIKTFGE 257 (432)
Q Consensus 250 ~~i~~fi~ 257 (432)
+.|.+|++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888763
No 334
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=91.50 E-value=3.1 Score=32.73 Aligned_cols=93 Identities=10% Similarity=0.140 Sum_probs=60.3
Q ss_pred cCCCcceEEEEE-eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC-------
Q 013976 166 ESPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND------- 236 (432)
Q Consensus 166 ~~~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~------- 236 (432)
.+....+++=|. +| +.|.++-..+.++|++.++-..+..+|.++ -+.+.+.|.+. .+..++.++.+.
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~G 92 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY-DPCTVMFFFRNKHMMVDFG 92 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS--SSEEEEEEETTEEEEEESS
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC-CCeEEEEEecCeEEEEEec
Confidence 344455555454 44 789999999999999999999999999997 56888999997 423333333221
Q ss_pred CCceecCCCCC-CHHHHHHHHHHHhcC
Q 013976 237 DAKKHILDGEL-TLDKIKTFGEDFLEG 262 (432)
Q Consensus 237 ~~~~y~~~~~~-~~~~i~~fi~~~~~g 262 (432)
.+...+.++.+ +.+++..-++-+..|
T Consensus 93 tgnnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 93 TGNNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred CCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence 12223333333 567777777776554
No 335
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=91.41 E-value=1.8 Score=36.38 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976 168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 219 (432)
Q Consensus 168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~ 219 (432)
++..+|.|| ..| +.|....+.+.+++.+|.+ .+.++.|.++... ....+.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 445555565 567 8999999999999999974 3555555443210 02244567
Q ss_pred hCCC----CCCCcEEEEEeCCCCceecCC----CCCCHHHHHHHHHHH
Q 013976 220 FGIT----GEAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGEDF 259 (432)
Q Consensus 220 ~~i~----~~~~P~i~i~~~~~~~~y~~~----~~~~~~~i~~fi~~~ 259 (432)
||+. +...|+.++++.+....+.+. ...+.+.|.+.|+..
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7775 224578888877664445442 234667788888764
No 336
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.03 E-value=1.9 Score=38.82 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHH
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLA 323 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la 323 (432)
+.+.+++.|..+.|++|+++...+..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 3467899999999999999987766543
No 337
>PTZ00256 glutathione peroxidase; Provisional
Probab=90.76 E-value=2.2 Score=36.32 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.7
Q ss_pred CCcce-EEEEEeC-cchhhhHHHHHHHHHhccCc-eEEEEEecC
Q 013976 168 PIKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 208 (432)
Q Consensus 168 ~~~~~-i~~~~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~ 208 (432)
+++++ +++++.| +.|....+.+.++.++|+++ +.++.+.++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 44443 4457888 99999999999999999864 777777653
No 338
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=90.73 E-value=0.33 Score=47.17 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=37.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c---------CCCCCCceEEE
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILF 357 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~---------~~i~~~P~i~~ 357 (432)
++.|..+||++|......|.+. ++.+..+|+++... . + .+..++|+|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 7789999999999988777775 57777888876553 1 1 24678899855
No 339
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=2.3 Score=34.44 Aligned_cols=91 Identities=12% Similarity=0.215 Sum_probs=57.6
Q ss_pred cceEEEEEeC--cchhhhHHHHH---HHHHhccCceEEEEEecCCcc-------------cccchhhhhCCCCCCCcEEE
Q 013976 170 KNQLLLFAVS--NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED-------------VGKPVSEYFGITGEAPKVLA 231 (432)
Q Consensus 170 ~~~i~~~~~~--~~~~~~~~~~~---~~a~~~~~~i~f~~vd~~~~~-------------~~~~l~~~~~i~~~~~P~i~ 231 (432)
+.++++|... .-|..++..+. ++-+-+.+++.++.++...+. -.+++++.|++++. |+++
T Consensus 43 Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst--Ptfv 120 (182)
T COG2143 43 KYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST--PTFV 120 (182)
T ss_pred cEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC--ceEE
Confidence 4455555544 67888765432 344444555666666544321 12478899999999 9999
Q ss_pred EEeCCCCceecCCCCCCHHHHHHHHHHHhcC
Q 013976 232 YTGNDDAKKHILDGELTLDKIKTFGEDFLEG 262 (432)
Q Consensus 232 i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g 262 (432)
+++..+...+...|.+.++++..-+.-+-.|
T Consensus 121 Ffdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 121 FFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred EEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9987766667778888888765544443333
No 340
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=90.32 E-value=1.2 Score=36.49 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=32.9
Q ss_pred CCcceEEEEEeCcchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976 168 PIKNQLLLFAVSNDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 208 (432)
Q Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~ 208 (432)
++.+++.|++.|..|....+.+.+++++|++ .+.++.+.++
T Consensus 22 Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCCchHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 5677888999993399999999999999975 4777777653
No 341
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.02 E-value=0.58 Score=39.47 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 340 (432)
+.+..++.|+...|++|..+.+.+..+.+.+.+ ++.+..+...
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCc
Confidence 457889999999999999999999999888855 5666655543
No 342
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=1.1 Score=34.09 Aligned_cols=53 Identities=9% Similarity=0.256 Sum_probs=34.2
Q ss_pred cEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--cc-----CCCCCCceEEE
Q 013976 299 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILF 357 (432)
Q Consensus 299 ~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~-----~~i~~~P~i~~ 357 (432)
.-+|.|..+||..|+.+...|.+ +.. ...+..+|-..+.. ++ -.-.++|.+.+
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 34566889999999998777776 333 57777777664433 11 13347777544
No 343
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.25 E-value=4.7 Score=34.17 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=72.4
Q ss_pred HHHHHHhcCCCceeecCCCchhhh---ccCCCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccch
Q 013976 141 IADFVFSNKLPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPV 216 (432)
Q Consensus 141 l~~fi~~~~~p~v~~l~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l 216 (432)
+..-...+....|.+++...+..- .+.+.-+++.+|... +.|.-+...+..+|.+|.. +.|+.+-++..
T Consensus 81 ~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c------ 153 (240)
T KOG3170|consen 81 WRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC------ 153 (240)
T ss_pred HHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc------
Confidence 333344566777888887776542 233333345577777 8999999999999999998 88888876652
Q ss_pred hhhhCCCCCCCcEEEEEeCCCCc--ee---cCCC-CCCHHHHHHHHHH
Q 013976 217 SEYFGITGEAPKVLAYTGNDDAK--KH---ILDG-ELTLDKIKTFGED 258 (432)
Q Consensus 217 ~~~~~i~~~~~P~i~i~~~~~~~--~y---~~~~-~~~~~~i~~fi~~ 258 (432)
+..|- ...+|+++++..+..+ .. .+.| ..+.+++..|+-+
T Consensus 154 IpNYP--e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 154 IPNYP--ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cCCCc--ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 12221 2356999988776522 11 2233 4688899888877
No 344
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.24 E-value=6.8 Score=29.16 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCcE-EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeccCCCC
Q 013976 297 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 375 (432)
Q Consensus 297 ~~~~-lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~ 375 (432)
.+++ ++.|..+. ..|..+...++++|..=. ++.+-..+... ..|++++..+|.. .-++|.|-..
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~--~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGED--TGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCc--ccEEEEecCC
Confidence 4555 44555544 899999888888876543 45554433211 4799999987743 3579999888
Q ss_pred HHHHHHHHHh
Q 013976 376 VVALYKFLKK 385 (432)
Q Consensus 376 ~~~l~~fi~~ 385 (432)
-..+.+||..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 8888888754
No 345
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=86.96 E-value=4.4 Score=29.32 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=50.5
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCccc-ccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 249 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~-~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~ 249 (432)
+.+|..++ +.|......+++++.++.+ +.+..+|...... ...+....|......|++++- ++.. -..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~----g~~i-----gg~ 72 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD----QKHI-----GGC 72 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC----CEEE-----cCH
Confidence 44556667 9999999999999987744 8888888876310 123444445322345998652 2221 256
Q ss_pred HHHHHHHHHHh
Q 013976 250 DKIKTFGEDFL 260 (432)
Q Consensus 250 ~~i~~fi~~~~ 260 (432)
++|.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 346
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=86.49 E-value=1.5 Score=34.85 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=37.2
Q ss_pred ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCC-CCCCCcEEEEEeCC
Q 013976 171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGI-TGEAPKVLAYTGND 236 (432)
Q Consensus 171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i-~~~~~P~i~i~~~~ 236 (432)
.++++..+| ++|....|.+.++|+...+ +.+-++.-+. +.++++.|-- .....|++++++.+
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~---~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDE---NKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHH---HHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecC---ChhHHHHHHhCCCeecCEEEEEcCC
Confidence 356666788 9999999999999998643 4544444433 3355544422 22245999998765
No 347
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=86.36 E-value=3.2 Score=33.61 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=32.4
Q ss_pred CcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc
Q 013976 169 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE 210 (432)
Q Consensus 169 ~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~ 210 (432)
++.+++|| +.| +.|+...+.+.++..++.+ .+.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45566665 678 9999999999999999964 477777776653
No 348
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=86.21 E-value=1.7 Score=33.19 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=55.3
Q ss_pred eeecCCCchhhhccCCCcceEEEEEeC----cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCc
Q 013976 153 VTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 228 (432)
Q Consensus 153 v~~l~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P 228 (432)
+..++.++++.+...+ ...++|+..+ +.+....-.+-++.+.+.+.+..+.++... ...+...||+... |
T Consensus 11 ~~~vd~~~ld~~l~~~-~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~--P 84 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAP-GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRW--P 84 (107)
T ss_dssp EEEE-CCCHHHHHHCC-SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSS--S
T ss_pred CeeechhhHHHHHhCC-CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccC--C
Confidence 5566788888877664 4456666544 234444557888999999999888888544 4588999999988 9
Q ss_pred EEEEEeCC
Q 013976 229 VLAYTGND 236 (432)
Q Consensus 229 ~i~i~~~~ 236 (432)
+++++..+
T Consensus 85 aLvf~R~g 92 (107)
T PF07449_consen 85 ALVFFRDG 92 (107)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 99999765
No 349
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=86.12 E-value=3.4 Score=33.05 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=28.2
Q ss_pred CCcceEEEEE-eC-cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976 168 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 208 (432)
Q Consensus 168 ~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~ 208 (432)
+++.++.||. .| +.|....+.+.++..++.+ .+.++.+..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4556666664 55 7799999999998888864 3555555443
No 350
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=86.05 E-value=1.8 Score=35.00 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCC
Q 013976 168 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 209 (432)
Q Consensus 168 ~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~ 209 (432)
+++.++.||..| +.|....+.+.++..++.+ +.|+.|..+.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCC
Confidence 556777788877 6799999999999999874 7888887764
No 351
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=85.27 E-value=0.47 Score=42.91 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc---cccCCCCCCceEEEEeCCCcccCceeccCC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---HHRAKSDGFPTILFFPAGNKSFDPINVDVD 373 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~---~~~~~i~~~P~i~~~~~g~~~~~~~~y~g~ 373 (432)
..++-+.||+.||+..+..+|.++-....+.. +....++-..+. ...+++.+.|++.+....- +..|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~----~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC----PASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc----chhhccc
Confidence 46788999999999999999999888888874 222222211111 1578999999999987654 3489999
Q ss_pred CCHHHHHHHHHhcCC
Q 013976 374 RTVVALYKFLKKNAS 388 (432)
Q Consensus 374 ~~~~~l~~fi~~~~~ 388 (432)
++..+|.+|..+.+.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999886
No 352
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=85.20 E-value=5.4 Score=32.63 Aligned_cols=42 Identities=5% Similarity=0.086 Sum_probs=28.8
Q ss_pred CCCcceEEEEEeC--cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976 167 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 208 (432)
Q Consensus 167 ~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~ 208 (432)
.+++.++.||..+ +.|....+.+.++++++.+ .+.++.|..+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3445666676654 6799888888888888864 3666666543
No 353
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.82 E-value=1.9 Score=35.16 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=28.4
Q ss_pred EEEEeCC------CChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~------~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+|+|+++ +|++|..++.+|+.+ ++.+-.+|++....
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~ 43 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSG 43 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHH
Confidence 5677777 899999998888776 57788889876543
No 354
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=84.76 E-value=4.1 Score=34.59 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccCceEE------EEEecCCcc-----c---------------------cc
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF------VYVQMDNED-----V---------------------GK 214 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f------~~vd~~~~~-----~---------------------~~ 214 (432)
++..+|-+++.| ..|+...|.+..++.+- +.+ ..||.++.. | ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK---FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC---CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 666788899999 88999888888886541 222 333333210 0 11
Q ss_pred chhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHH
Q 013976 215 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 256 (432)
Q Consensus 215 ~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi 256 (432)
.+...+|+.+. ++++++++.++...+...|.++.+.+.+++
T Consensus 136 ~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 136 AVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred hHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 23456777665 345367777666677788999998888743
No 355
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=84.69 E-value=3 Score=34.10 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=29.9
Q ss_pred CCCcceEEEEEeC-cchhhhHHHHHHHHHhccCc-----eEEEEEecCC
Q 013976 167 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-----LIFVYVQMDN 209 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~-----i~f~~vd~~~ 209 (432)
.++.+.++|-+.| ++|+.+.+.+.++....+.. |.|+.-|-+.
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~ 80 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDE 80 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCH
Confidence 3444555666788 99999999988888888765 4555544443
No 356
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=84.48 E-value=13 Score=32.82 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHhcCCcCccccCCCCCCCCCCceEEEecccchhhh--hcCCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 013976 247 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 324 (432)
Q Consensus 247 ~~~~~i~~fi~~~~~g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~--~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~ 324 (432)
+|.+.+..-....+..-.+......+.| +..|..+++.+....+ ...++|.+|.|-+=.|++-..-...|+++++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~ 129 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVE 129 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHH
Confidence 4555544433333333223333333444 5678889987743333 3567999999999889998888899999999
Q ss_pred HhcCCCCEEEE
Q 013976 325 HLRGVDSIVIA 335 (432)
Q Consensus 325 ~~~~~~~~~~~ 335 (432)
.|.+.-+..++
T Consensus 130 ~f~d~adFl~V 140 (237)
T PF00837_consen 130 DFSDVADFLIV 140 (237)
T ss_pred Hhhhhhheehh
Confidence 99874333333
No 357
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=84.39 E-value=2.5 Score=30.32 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=36.5
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--cccchhhhhCCCCCCCcEEEE
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--~~~~l~~~~~i~~~~~P~i~i 232 (432)
+++|+.+| +.|+.+.+.+.++. ..+.+.+..+|..... ....+.+..|+... |++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence 35778888 99999999998877 3344666666654321 01124455576655 99854
No 358
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.28 E-value=0.75 Score=35.54 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=48.5
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccccc------CCCCCCceEEEEeCCCcccCceeccC---
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR------AKSDGFPTILFFPAGNKSFDPINVDV--- 372 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~------~~i~~~P~i~~~~~g~~~~~~~~y~g--- 372 (432)
.+|+.++|+.|+.....|++- ++.|-.+|+..+.... ....+.|..-++.......+.....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 578999999999987666663 5777778877666521 23334565555543332211111211
Q ss_pred CCCHHHHHHHHHhcCC
Q 013976 373 DRTVVALYKFLKKNAS 388 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~ 388 (432)
..+.+.++++|.++..
T Consensus 74 ~~s~~e~~~~l~~~p~ 89 (111)
T cd03036 74 SLSEEEALELLSSDGM 89 (111)
T ss_pred cCCHHHHHHHHHhCcC
Confidence 3467888888888765
No 359
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.14 E-value=1.2 Score=33.99 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=47.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc------cCCCCCCceEEEEeCCCcccCceec--cC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH------RAKSDGFPTILFFPAGNKSFDPINV--DV 372 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~------~~~i~~~P~i~~~~~g~~~~~~~~y--~g 372 (432)
+.+|+.++|+.|+.....+++. ++.+-.+|+.++... -..-.+.+.--++.......+-..- ..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 3579999999999987766664 566777777665441 1122233333344322111011111 23
Q ss_pred CCCHHHHHHHHHhcCCC
Q 013976 373 DRTVVALYKFLKKNASI 389 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~~ 389 (432)
..+.+++.++|.++-..
T Consensus 73 ~ls~~e~~~~l~~~p~L 89 (105)
T cd02977 73 ELSDEEALELMAEHPKL 89 (105)
T ss_pred CCCHHHHHHHHHhCcCe
Confidence 57889999999888764
No 360
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.79 E-value=5.1 Score=30.94 Aligned_cols=69 Identities=23% Similarity=0.117 Sum_probs=47.9
Q ss_pred cCCCcceEEEEE--------eC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCC---CCcEEEEE
Q 013976 166 ESPIKNQLLLFA--------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE---APKVLAYT 233 (432)
Q Consensus 166 ~~~~~~~i~~~~--------~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~---~~P~i~i~ 233 (432)
.+++...++|+. +| ++|-...+.+.++-+.....+.|+.+++.+-.+.+.....|..... ..|+++=+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 445555555554 45 7899999999999998888899999999875544454555554433 34777655
Q ss_pred e
Q 013976 234 G 234 (432)
Q Consensus 234 ~ 234 (432)
.
T Consensus 103 ~ 103 (128)
T KOG3425|consen 103 K 103 (128)
T ss_pred c
Confidence 4
No 361
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.71 E-value=1.6 Score=38.04 Aligned_cols=41 Identities=27% Similarity=0.582 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcCCCCEEEEEEeC
Q 013976 297 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDG 339 (432)
Q Consensus 297 ~~~~lv~f~~~~c~~c~~~~~~~---~~la~~~~~~~~~~~~~id~ 339 (432)
+++.+|.|+.-.|++|..+.+.+ ..+.+.+.+ ++.+..+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 45679999999999999999866 777778876 566666554
No 362
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=83.54 E-value=3.3 Score=28.99 Aligned_cols=71 Identities=6% Similarity=0.035 Sum_probs=39.5
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhh--CCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF--GITGEAPKVLAYTGNDDAKKHILDGELT 248 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~--~i~~~~~P~i~i~~~~~~~~y~~~~~~~ 248 (432)
+.+|+++| +.|+.+.+.+.+++.. +..+|.+........+... +... .|+++ ++++ .. -...+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~------~~~idi~~~~~~~~~~~~~~~~~~~--vP~i~-~~~g--~~---l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA------YEWVDIEEDEGAADRVVSVNNGNMT--VPTVK-FADG--SF---LTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc------eEEEeCcCCHhHHHHHHHHhCCCce--eCEEE-ECCC--eE---ecCCC
Confidence 46778888 9999999888776443 4467776532111112222 5544 49984 4333 11 12345
Q ss_pred HHHHHHHH
Q 013976 249 LDKIKTFG 256 (432)
Q Consensus 249 ~~~i~~fi 256 (432)
...+.+.+
T Consensus 68 ~~~~~~~l 75 (77)
T TIGR02200 68 AAQVKAKL 75 (77)
T ss_pred HHHHHHHh
Confidence 55665544
No 363
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=83.35 E-value=2.6 Score=35.23 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCcceEEEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCC
Q 013976 168 PIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 223 (432)
Q Consensus 168 ~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~ 223 (432)
+++.++.||..| +.|...++.+.++++++. .+.++.+.++.......+++.+|+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 556677888888 679999999999999985 4777777665432134455665553
No 364
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.24 E-value=2.6 Score=30.33 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=49.4
Q ss_pred EEEEeC--cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCC-CceecCCCCCCHH
Q 013976 174 LLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTLD 250 (432)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~-~~~y~~~~~~~~~ 250 (432)
.+|... .=|..+...+.+++.... +.+..+|..+ .+.+...||. ..|++.+....+ .......+.++.+
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~---d~~l~~~Y~~---~IPVl~~~~~~~~~~~~~~~~~~d~~ 74 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDE---DPELFEKYGY---RIPVLHIDGIRQFKEQEELKWRFDEE 74 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTT---THHHHHHSCT---STSEEEETT-GGGCTSEEEESSB-HH
T ss_pred EEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCC---CHHHHHHhcC---CCCEEEEcCcccccccceeCCCCCHH
Confidence 445444 558888877777655544 7888999997 5578899986 349987654221 1123345678999
Q ss_pred HHHHHHH
Q 013976 251 KIKTFGE 257 (432)
Q Consensus 251 ~i~~fi~ 257 (432)
.|.+|++
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999875
No 365
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=83.19 E-value=8.8 Score=32.78 Aligned_cols=93 Identities=9% Similarity=-0.072 Sum_probs=57.8
Q ss_pred CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc----------------------cccchhhhhCC
Q 013976 168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFGI 222 (432)
Q Consensus 168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~i 222 (432)
+++.++.|| ..| +.|....+.|.+.+.+|.+ .+.++.|..+... ....+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 444455556 566 8899999999999999863 2333333332210 02466788887
Q ss_pred C----CCCCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHHh
Q 013976 223 T----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL 260 (432)
Q Consensus 223 ~----~~~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~~ 260 (432)
. +...|+.++++.++...|.+ ....+.+++.+.++.+-
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 3 22238888887666443332 33468889998887754
No 366
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=83.11 E-value=20 Score=30.54 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=31.6
Q ss_pred CCcceEEEEEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecC
Q 013976 168 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 208 (432)
Q Consensus 168 ~~~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~ 208 (432)
++..+|.+++.| +.|. ..+.|.++.++|++ .+.++.+.|+
T Consensus 25 GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 567788889999 6665 47789999999985 3888888775
No 367
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=82.02 E-value=12 Score=31.94 Aligned_cols=91 Identities=10% Similarity=-0.011 Sum_probs=54.3
Q ss_pred CCcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc--------------c--------cccchhhhhCC
Q 013976 168 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE--------------D--------VGKPVSEYFGI 222 (432)
Q Consensus 168 ~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~--------------~--------~~~~l~~~~~i 222 (432)
++++++.|| +.| +.|...++.|.++..++.+ .+.++.|.++.. . ....+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 445556666 677 8999999999999998863 233333332210 0 02355677887
Q ss_pred CCC----CCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHH
Q 013976 223 TGE----APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGED 258 (432)
Q Consensus 223 ~~~----~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~ 258 (432)
... ..|+.++++.++...+.. ....+.+++.+.|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 521 347777776655333332 123477777777754
No 368
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=80.91 E-value=6.5 Score=31.82 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=30.4
Q ss_pred CcceEEEE-EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCC
Q 013976 169 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN 209 (432)
Q Consensus 169 ~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~ 209 (432)
+..++.|| +.| +.|....+.+.++++++.+ .+.++.|..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 45556666 677 8999999999999999974 46666665543
No 369
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.31 E-value=2.5 Score=32.26 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=26.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+.+|+.|+|+.|+.....+.+- ++.+-.+|..+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence 3578999999999877665554 56777777776655
No 370
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.80 E-value=12 Score=26.21 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=40.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeccCCCCHH
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 377 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~ 377 (432)
+.+|+.+.|..|...+-.+.+. ++.+-.++++.... ..-....+|+++.=..|... + -....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~--------gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~---~----l~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH--------GIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQ---Q----LVDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC--------CCceEEEECCchhHHHHHHhCCCccCEEEECCCCCcc---E----EEcHH
Confidence 4578889999999987655555 23333344332111 22344578888653221111 0 23567
Q ss_pred HHHHHHHhcC
Q 013976 378 ALYKFLKKNA 387 (432)
Q Consensus 378 ~l~~fi~~~~ 387 (432)
.|.+||.+++
T Consensus 67 ~I~~yL~~~~ 76 (77)
T cd03040 67 VIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHc
Confidence 7888888765
No 371
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=76.67 E-value=3.4 Score=32.97 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=45.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCceEEEEeCCCcccCceecc-CC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPTILFFPAGNKSFDPINVD-VD 373 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~i~~~~~g~~~~~~~~y~-g~ 373 (432)
+.+|+.++|+.|+.....+.+. ++.+-.+|+.+++.. . +...+.+.--++.......+-.... ..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ 73 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDVES 73 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCccc
Confidence 5688999999999877666554 567777787666541 1 1222233333342222211111111 14
Q ss_pred CCHHHHHHHHHhcCC
Q 013976 374 RTVVALYKFLKKNAS 388 (432)
Q Consensus 374 ~~~~~l~~fi~~~~~ 388 (432)
.+.+++++.|.++..
T Consensus 74 ls~~e~i~ll~~~p~ 88 (131)
T PRK01655 74 LSLQDLIKLISDNPG 88 (131)
T ss_pred CCHHHHHHHHHhCcc
Confidence 566778888887765
No 372
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=76.30 E-value=7.5 Score=33.30 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=55.2
Q ss_pred ceeecCC-CchhhhccCC-Cc--ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCC
Q 013976 152 LVTIFTR-ENAPSVFESP-IK--NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 226 (432)
Q Consensus 152 ~v~~l~~-~~~~~~~~~~-~~--~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~ 226 (432)
.|.+++. ..|...+... +. ..+.+|.+. +.|..+...+.=+|.+|.- +.|+.+-...- ...+.|..+..
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~----gas~~F~~n~l- 212 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT----GASDRFSLNVL- 212 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc----cchhhhcccCC-
Confidence 5666655 3344333332 22 245567777 8999999999999999987 88998877653 44677777666
Q ss_pred CcEEEEEeCCC
Q 013976 227 PKVLAYTGNDD 237 (432)
Q Consensus 227 ~P~i~i~~~~~ 237 (432)
|++.|+.++.
T Consensus 213 -P~LliYkgGe 222 (273)
T KOG3171|consen 213 -PTLLIYKGGE 222 (273)
T ss_pred -ceEEEeeCCc
Confidence 9999987664
No 373
>PRK13190 putative peroxiredoxin; Provisional
Probab=75.87 E-value=21 Score=30.87 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=54.2
Q ss_pred EEeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCc------------------------ccccchhhhhCCCC----C
Q 013976 176 FAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------------------------DVGKPVSEYFGITG----E 225 (432)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~------------------------~~~~~l~~~~~i~~----~ 225 (432)
.+.| +.|....+.+.++..+|+. .+.++.+.++.. +....+++.||+.. .
T Consensus 36 p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~ 115 (202)
T PRK13190 36 PADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGA 115 (202)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCc
Confidence 3555 7899988888888888864 244444433310 01235567778731 2
Q ss_pred CCcEEEEEeCCCCcee----cCCCCCCHHHHHHHHHHHhc
Q 013976 226 APKVLAYTGNDDAKKH----ILDGELTLDKIKTFGEDFLE 261 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y----~~~~~~~~~~i~~fi~~~~~ 261 (432)
..|..++++.++..++ .....++.+++.+.++.+..
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 3588888877654333 23456899999998887653
No 374
>PHA03075 glutaredoxin-like protein; Provisional
Probab=75.26 E-value=5.5 Score=30.45 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 327 (432)
Q Consensus 298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~ 327 (432)
+.++++|-.|.|+-|.....++.+|...|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999888877755543
No 375
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=75.09 E-value=14 Score=26.05 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=39.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--c---c-CCCCCCceEEEEeCCCcccCceeccCCC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILFFPAGNKSFDPINVDVDR 374 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~---~-~~i~~~P~i~~~~~g~~~~~~~~y~g~~ 374 (432)
+.+|+.++|..|.+.+-.+.+. ++.+-.+++..... + + -....+|+++. .+|... -.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~--------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~--------l~ 64 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL--------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ--------MF 64 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc--------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE--------EE
Confidence 4567889999998877666655 34444455543321 1 1 24467898753 222221 23
Q ss_pred CHHHHHHHHHhc
Q 013976 375 TVVALYKFLKKN 386 (432)
Q Consensus 375 ~~~~l~~fi~~~ 386 (432)
....|.+||.+.
T Consensus 65 es~~I~~yL~~~ 76 (77)
T cd03041 65 ESADIVKYLFKT 76 (77)
T ss_pred cHHHHHHHHHHh
Confidence 567788887764
No 376
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=74.66 E-value=30 Score=26.99 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=56.2
Q ss_pred ceEEEEEeC---cchhhhHHHHHHHHHhccCc-eEEEEEecCCccccc-----------chhhhhCCCCCCCcEEEEEeC
Q 013976 171 NQLLLFAVS---NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGK-----------PVSEYFGITGEAPKVLAYTGN 235 (432)
Q Consensus 171 ~~i~~~~~~---~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~~~~~-----------~l~~~~~i~~~~~P~i~i~~~ 235 (432)
-++++|++. +.++.....+.+....+..+ +.+..+-.... .. .+.+.|++.... -.++++..
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~-f~~vLiGK 87 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGG-FTVVLIGK 87 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCc-eEEEEEeC
Confidence 367788876 23566666677655556553 44444422221 33 677888987654 44556666
Q ss_pred CCCceecCCCCCCHHHHHHHHHHH
Q 013976 236 DDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 236 ~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
+++.+..+....+.+.|-..|+..
T Consensus 88 DG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 88 DGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCcEEEecCCCCCHHHHHHHHhCC
Confidence 666777788889999999998874
No 377
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=73.99 E-value=7.7 Score=31.06 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCCcceEEEEEeC-cc-hhhhHHHHHHHHHhccC----ceEEEEEecC
Q 013976 167 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMD 208 (432)
Q Consensus 167 ~~~~~~i~~~~~~-~~-~~~~~~~~~~~a~~~~~----~i~f~~vd~~ 208 (432)
.++..++.|+..| +. |....+.+.+++.++.. ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4556677788888 76 99999999999999975 3777777654
No 378
>PRK15000 peroxidase; Provisional
Probab=73.94 E-value=25 Score=30.36 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=55.9
Q ss_pred CCcceEEEEEe-C-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976 168 PIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 219 (432)
Q Consensus 168 ~~~~~i~~~~~-~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~ 219 (432)
++..++.||.. + +.|....+.|.+.+.+|+. .+.++.+.++... ....+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 44444555553 4 7899999999999999874 2444444433211 12245566
Q ss_pred hCCCC----CCCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHHh
Q 013976 220 FGITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL 260 (432)
Q Consensus 220 ~~i~~----~~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~~ 260 (432)
||+.. ...|..++++.++...+.+ .-.++.+++.+.++.+.
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77652 1358888887665433332 22468888888887643
No 379
>PRK12559 transcriptional regulator Spx; Provisional
Probab=73.26 E-value=5.3 Score=31.89 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=44.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCceEEEEeCCCcccCceecc-CC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPTILFFPAGNKSFDPINVD-VD 373 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~i~~~~~g~~~~~~~~y~-g~ 373 (432)
+.+|+.++|+.|+.....|++- ++.+-.+|+.+++.. . +...+.+.--++.......+-.... ..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ 73 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEE 73 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCccc
Confidence 5689999999998876555544 566666777666551 1 1222344334443322211111111 14
Q ss_pred CCHHHHHHHHHhcCC
Q 013976 374 RTVVALYKFLKKNAS 388 (432)
Q Consensus 374 ~~~~~l~~fi~~~~~ 388 (432)
.+.+.+++.|.++..
T Consensus 74 ls~~e~i~ll~~~P~ 88 (131)
T PRK12559 74 LSLNEFYKLIIEHPL 88 (131)
T ss_pred CCHHHHHHHHHhCcc
Confidence 566777777777654
No 380
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=72.69 E-value=4.6 Score=31.46 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccC----CCCCC-ceEEEEeCCCcccCceec---c
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGF-PTILFFPAGNKSFDPINV---D 371 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~----~i~~~-P~i~~~~~g~~~~~~~~y---~ 371 (432)
.+|+.++|+.|+.....+++- ++.+-.+|+.+... ..+ ...+. +.-++=++|... +-... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~-k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY-RALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch-hhCCchhhc
Confidence 478999999999988777663 56777788776555 111 22222 222333444322 11111 1
Q ss_pred CCCCHHHHHHHHHhcCCC
Q 013976 372 VDRTVVALYKFLKKNASI 389 (432)
Q Consensus 372 g~~~~~~l~~fi~~~~~~ 389 (432)
...+.+++.++|.++...
T Consensus 73 ~~ls~~e~~~~i~~~p~L 90 (117)
T TIGR01617 73 LDLSDKEALELLAEDPAL 90 (117)
T ss_pred ccCCHHHHHHHHHhCcce
Confidence 256778888888887653
No 381
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=71.52 E-value=9.9 Score=29.70 Aligned_cols=68 Identities=24% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCCcceEEEEE-------eC-cchhhhHHHHHHHHHhccCceEEEEEecCCccccc----chhh--hhCCCCCCCcEEEE
Q 013976 167 SPIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK----PVSE--YFGITGEAPKVLAY 232 (432)
Q Consensus 167 ~~~~~~i~~~~-------~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~----~l~~--~~~i~~~~~P~i~i 232 (432)
.+.+..++|+. +| ++|....+.++++-....+...|+++.+......+ .+-. .++++.. |+++-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I--PTLi~ 95 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI--PTLIR 95 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS--SEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec--ceEEE
Confidence 33455555554 35 78999999999988887777888888775422111 2222 3666666 99987
Q ss_pred EeCC
Q 013976 233 TGND 236 (432)
Q Consensus 233 ~~~~ 236 (432)
+...
T Consensus 96 ~~~~ 99 (119)
T PF06110_consen 96 WETG 99 (119)
T ss_dssp CTSS
T ss_pred ECCC
Confidence 7544
No 382
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=70.48 E-value=26 Score=24.46 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=44.6
Q ss_pred EEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHH
Q 013976 303 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVAL 379 (432)
Q Consensus 303 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l 379 (432)
+|+.++|..|.+.+-.+... +. .+.+..++...... .......+|++. .+|..+ .+...|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l---------~dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL---------TDSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE---------ESHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE---------eCHHHH
Confidence 47789999998876544444 31 34555555444322 234556899987 545432 377889
Q ss_pred HHHHHhcCCCC
Q 013976 380 YKFLKKNASIP 390 (432)
Q Consensus 380 ~~fi~~~~~~~ 390 (432)
.++|.++...+
T Consensus 64 ~~yL~~~~~~~ 74 (75)
T PF13417_consen 64 IEYLEERYPGP 74 (75)
T ss_dssp HHHHHHHSTSS
T ss_pred HHHHHHHcCCC
Confidence 99998876543
No 383
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=70.39 E-value=7.3 Score=30.21 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=46.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCceEEEEeCCCcccCceecc-CC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPTILFFPAGNKSFDPINVD-VD 373 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~i~~~~~g~~~~~~~~y~-g~ 373 (432)
+.+|+.++|+.|+.....+++. ++.+-.+|+.++... . +...+.|.--++.......+..... ..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ 73 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDE 73 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCccc
Confidence 4578899999999987766664 466677777665541 1 1222234333443332211111111 24
Q ss_pred CCHHHHHHHHHhcCC
Q 013976 374 RTVVALYKFLKKNAS 388 (432)
Q Consensus 374 ~~~~~l~~fi~~~~~ 388 (432)
.+.+++++.|.++..
T Consensus 74 ls~~e~i~~l~~~p~ 88 (115)
T cd03032 74 LSLSELIRLISEHPS 88 (115)
T ss_pred CCHHHHHHHHHhChh
Confidence 677888888888765
No 384
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=68.18 E-value=30 Score=29.91 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=52.0
Q ss_pred EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------------cccchhhhhCCCCC-----
Q 013976 177 AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITGE----- 225 (432)
Q Consensus 177 ~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~i~~~----- 225 (432)
+.| +.|....+.|.+++.+|++ .+.++.+.++... ....+++.||+...
T Consensus 35 a~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~ 114 (203)
T cd03016 35 ADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGST 114 (203)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCC
Confidence 455 7899999999999999974 2555555444210 12356778887521
Q ss_pred -CCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHHh
Q 013976 226 -APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDFL 260 (432)
Q Consensus 226 -~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~~ 260 (432)
..|..++++.++..++.+ ....+.+++.+.++.+.
T Consensus 115 ~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 115 LTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 234566776665433332 23467888888887753
No 385
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=67.46 E-value=7.3 Score=32.26 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCceeecCC--CchhhhccCCCcceEEEEEeC-cchhhhHH-HH--HHHHHhccCceEEEEEecCCccccc
Q 013976 141 IADFVFSNKLPLVTIFTR--ENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGK 214 (432)
Q Consensus 141 l~~fi~~~~~p~v~~l~~--~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~--~~~a~~~~~~i~f~~vd~~~~~~~~ 214 (432)
-.-++..+....|.-..- +.+..--..+++.++.++..| .-|+.+.. .| .++|.-+..++.-+.+|.++ .+
T Consensus 8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree---~P 84 (163)
T PF03190_consen 8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE---RP 84 (163)
T ss_dssp --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----H
T ss_pred CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc---Cc
Confidence 455777777766654444 445555567777788888888 55887754 33 34777777778888999887 55
Q ss_pred chhhhh--------CCCCCCCcEEEEEeCCCC
Q 013976 215 PVSEYF--------GITGEAPKVLAYTGNDDA 238 (432)
Q Consensus 215 ~l~~~~--------~i~~~~~P~i~i~~~~~~ 238 (432)
++-..| |..+. |+-++..++..
T Consensus 85 did~~y~~~~~~~~~~gGw--Pl~vfltPdg~ 114 (163)
T PF03190_consen 85 DIDKIYMNAVQAMSGSGGW--PLTVFLTPDGK 114 (163)
T ss_dssp HHHHHHHHHHHHHHS---S--SEEEEE-TTS-
T ss_pred cHHHHHHHHHHHhcCCCCC--CceEEECCCCC
Confidence 766665 56565 99999988653
No 386
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=66.69 E-value=21 Score=24.53 Aligned_cols=49 Identities=6% Similarity=0.108 Sum_probs=29.1
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCCceEE
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTIL 356 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~P~i~ 356 (432)
++|+.+||..|...+-.+.+. +. .+.+..+|...... .......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl-~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GI-TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CC-CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 468899999998876555544 21 34455555432221 223456788885
No 387
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=65.19 E-value=27 Score=23.88 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=15.1
Q ss_pred EEeCCCChhhhhhHHHHHHH
Q 013976 303 EIYAPWCGHCQAFEPTYNKL 322 (432)
Q Consensus 303 ~f~~~~c~~c~~~~~~~~~l 322 (432)
+|+.++|..|...+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 57789999998877555544
No 388
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.11 E-value=12 Score=31.62 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=26.1
Q ss_pred EEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 013976 303 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 340 (432)
Q Consensus 303 ~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~ 340 (432)
+|+.|.|+.|-.+.|.|.++...+.. .+.+-.+-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEcc
Confidence 58999999999999999999999998 4555554443
No 389
>PRK13191 putative peroxiredoxin; Provisional
Probab=63.32 E-value=53 Score=28.72 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=54.7
Q ss_pred ceEEEE--EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------------cccchhhhhCC
Q 013976 171 NQLLLF--AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGI 222 (432)
Q Consensus 171 ~~i~~~--~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~i 222 (432)
++++|| ++| +.|...+..|.+.+.+|+. .+.++.+.++... ....+++.||+
T Consensus 35 ~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 35 WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 444433 444 7899999999999999963 2444444443211 02345567776
Q ss_pred C-----CCCCcEEEEEeCCCCceec----CCCCCCHHHHHHHHHHH
Q 013976 223 T-----GEAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDF 259 (432)
Q Consensus 223 ~-----~~~~P~i~i~~~~~~~~y~----~~~~~~~~~i~~fi~~~ 259 (432)
- ....|+.++++.++..++. ..-.++.+++.+.++.+
T Consensus 115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 3 1235778788766543332 23346888998888775
No 390
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=62.56 E-value=17 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCCcceEEEE-EeC-cchhhhHHHHHHHHHhcc-CceEEEEEecCC
Q 013976 167 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDN 209 (432)
Q Consensus 167 ~~~~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~-~~i~f~~vd~~~ 209 (432)
.+++.++.|| ..| +.|....+.+.+++.+++ ..+.|+.+..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3556666667 456 889999999999999985 347777777654
No 391
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=1.4e+02 Score=28.18 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=94.3
Q ss_pred cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 180 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 180 ~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
...++++..+.++|..- +++.+-..+.. . ..|.+.+-..+...-..|-|-.---++..++-..
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~~~--------~--------RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDSDL--------V--------RKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecCcc--------c--------cCCceeecCCCcccceEEecCcccchHHHHHHHH
Confidence 56777888888887764 44554432111 1 1377777766654445555533333444455444
Q ss_pred hc--CCcCccccCCCCCCCCCCceEEEecccchhhhhcCC-CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEE
Q 013976 260 LE--GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK 336 (432)
Q Consensus 260 ~~--g~l~~~~~se~~p~~~~~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~ 336 (432)
+. |.. | ++..+-.++ +.+-. ...+=-|++-.|..|......++-++-. ++++.-..
T Consensus 94 lqv~G~p---------p--------k~~q~vieq-ik~i~g~~~FETy~SltC~nCPDVVQALN~msvl---Np~I~H~~ 152 (520)
T COG3634 94 LQVGGHP---------P--------KEDQDVIEQ-IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL---NPRIKHTA 152 (520)
T ss_pred HHhcCCC---------C--------chhHHHHHH-HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc---CCCceeEE
Confidence 42 221 1 112222222 32323 3456667788899998776666554332 34688888
Q ss_pred EeCCCccc--ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHh
Q 013976 337 MDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 337 id~~~~~~--~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 385 (432)
||...... +.-+|-++|++++ +|.. .-.|.++.++|++-|..
T Consensus 153 IdGa~Fq~Evear~IMaVPtvfl--nGe~-----fg~GRmtleeilaki~~ 196 (520)
T COG3634 153 IDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKIDT 196 (520)
T ss_pred ecchhhHhHHHhccceecceEEE--cchh-----hcccceeHHHHHHHhcC
Confidence 88665444 5679999999754 5654 34678899988877765
No 392
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.10 E-value=13 Score=29.64 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=45.2
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCceEEEEeCCCcccCceecc-CC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPTILFFPAGNKSFDPINVD-VD 373 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~i~~~~~g~~~~~~~~y~-g~ 373 (432)
+.+|+.++|+.|+.....|.+- ++.+-.+|...++.. . +...+.+.-.++.......+-.... ..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~~~ 73 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDIEE 73 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcchhc
Confidence 4578899999998876544443 577777887766652 1 1222222222333222211111111 25
Q ss_pred CCHHHHHHHHHhcCCC
Q 013976 374 RTVVALYKFLKKNASI 389 (432)
Q Consensus 374 ~~~~~l~~fi~~~~~~ 389 (432)
.+.++++++|.++...
T Consensus 74 ls~~e~i~ll~~~P~L 89 (132)
T PRK13344 74 LSVNEVIDLIQENPRI 89 (132)
T ss_pred CCHHHHHHHHHhCccc
Confidence 6778888888887653
No 393
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=62.09 E-value=27 Score=23.67 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=37.0
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 249 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~ 249 (432)
+.+|..+| +.|..+...+.+. .+.+..+|.+... ....+.+..+.... |++.+. + . .+ +..+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~v--P~i~~~--~--~--~i-~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSV--PVVVIG--D--E--HL-SGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCccc--CEEEEC--C--E--EE-ecCCH
Confidence 34566677 8899887776652 2566667766421 01122222244444 999652 2 1 22 23566
Q ss_pred HHHHHH
Q 013976 250 DKIKTF 255 (432)
Q Consensus 250 ~~i~~f 255 (432)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 666655
No 394
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=61.85 E-value=21 Score=23.70 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=28.5
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEE
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 357 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~ 357 (432)
.+|+.++|+.|...+-.+... +. .+....++...... .......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-----~i-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-----GL-PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----CC-CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 367889999998877666555 21 23333444322211 2345567887754
No 395
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=61.84 E-value=27 Score=25.26 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=47.9
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCH
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 249 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~ 249 (432)
+++|..++ +.|.+.+..+.++..++.+ +.+..+|..... ....+....|-.....|++++- + +.. -..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~--g--~~i-----gG~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD--E--KHV-----GGC 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC--C--EEe-----cCH
Confidence 34555566 9999999999888766544 677777776421 0123445555422346999552 1 221 256
Q ss_pred HHHHHHHHHHh
Q 013976 250 DKIKTFGEDFL 260 (432)
Q Consensus 250 ~~i~~fi~~~~ 260 (432)
++|.+++.+..
T Consensus 72 ~dl~~~~~~~~ 82 (86)
T TIGR02183 72 TDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHhcc
Confidence 77888877743
No 396
>PRK13189 peroxiredoxin; Provisional
Probab=61.80 E-value=73 Score=28.02 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=54.6
Q ss_pred ceEEEE--EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------------cccchhhhhCC
Q 013976 171 NQLLLF--AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGI 222 (432)
Q Consensus 171 ~~i~~~--~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~i 222 (432)
++++|| ++| +.|......|.+++.+|+. .+.++.+.++... ....+++.||+
T Consensus 37 ~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv 116 (222)
T PRK13189 37 WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGM 116 (222)
T ss_pred eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCC
Confidence 444433 455 7899999999999988863 2333333322110 12356678887
Q ss_pred CC-----CCCcEEEEEeCCCCce----ecCCCCCCHHHHHHHHHHHh
Q 013976 223 TG-----EAPKVLAYTGNDDAKK----HILDGELTLDKIKTFGEDFL 260 (432)
Q Consensus 223 ~~-----~~~P~i~i~~~~~~~~----y~~~~~~~~~~i~~fi~~~~ 260 (432)
.. ...|..++++.++..+ +.....++.+++.+.++.+.
T Consensus 117 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 117 ISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred CccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 52 1357788887665332 22334578888888888753
No 397
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.56 E-value=14 Score=27.59 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=37.1
Q ss_pred CcEEEEEe----CCCChhhhhhHHHHHHHHHHhcCCCC-EEEEEEeCCCcccccC---CCCCCceE-EEEeCCC
Q 013976 298 KDVLLEIY----APWCGHCQAFEPTYNKLAKHLRGVDS-IVIAKMDGTTNEHHRA---KSDGFPTI-LFFPAGN 362 (432)
Q Consensus 298 ~~~lv~f~----~~~c~~c~~~~~~~~~la~~~~~~~~-~~~~~id~~~~~~~~~---~i~~~P~i-~~~~~g~ 362 (432)
.+++++.- .|.|+.+.+...++..+ . +.|+.+|+-.++.-+. ....+||+ -+|-+|.
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~--------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSAC--------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHc--------CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 45554442 46788887766655554 3 7889999888877333 33467777 6777774
No 398
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=61.20 E-value=77 Score=28.70 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=55.6
Q ss_pred cceEEEE-EeC-cchhhhHHHHHHHHHhccCc-eEEEEEecCCc-----------------c--------cccchhhhhC
Q 013976 170 KNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----------------D--------VGKPVSEYFG 221 (432)
Q Consensus 170 ~~~i~~~-~~~-~~~~~~~~~~~~~a~~~~~~-i~f~~vd~~~~-----------------~--------~~~~l~~~~~ 221 (432)
..+++|| +.| +.|....+.|.+...+|+++ +.++.+-++.. . ....+++.||
T Consensus 100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayG 179 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFG 179 (261)
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcC
Confidence 4444444 456 88999999999999998642 33333332221 0 1245678888
Q ss_pred CCC---CCCcEEEEEeCCCCceec----CCCCCCHHHHHHHHHHHh
Q 013976 222 ITG---EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFL 260 (432)
Q Consensus 222 i~~---~~~P~i~i~~~~~~~~y~----~~~~~~~~~i~~fi~~~~ 260 (432)
+.. ...|..++++.++...+. .....+.+++.+.|+.+.
T Consensus 180 v~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 180 LLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred CCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 742 235888888766533332 334578888888887653
No 399
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=60.52 E-value=19 Score=29.66 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCChhhhhh-HHHHHHHHHHhcCCCCE-EEEEEeCCCccc
Q 013976 298 KDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSI-VIAKMDGTTNEH 344 (432)
Q Consensus 298 ~~~lv~f~~~~c~~c~~~-~~~~~~la~~~~~~~~~-~~~~id~~~~~~ 344 (432)
..+|++|.+.||..|... .+.|.+....+... ++ .+.-+.++....
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~ 78 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFV 78 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHH
Confidence 445555567899999887 88899999998754 44 466666655444
No 400
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=57.28 E-value=18 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=32.0
Q ss_pred EEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCc-ccccchhhhhCCCCCCCcEEEE
Q 013976 174 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~P~i~i 232 (432)
+|..++ +.|+..+..|++. + +.+..+|.... .....+.+..|.... |++.+
T Consensus 3 vy~~~~C~~C~~~~~~L~~~-----~-i~y~~~dv~~~~~~~~~l~~~~g~~~~--P~v~i 55 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEFLDEK-----G-IPYEEVDVDEDEEAREELKELSGVRTV--PQVFI 55 (60)
T ss_dssp EEESTTSHHHHHHHHHHHHT-----T-BEEEEEEGGGSHHHHHHHHHHHSSSSS--SEEEE
T ss_pred EEEcCCCcCHHHHHHHHHHc-----C-CeeeEcccccchhHHHHHHHHcCCCcc--CEEEE
Confidence 344445 8899988777432 2 77888888875 223333344477666 99966
No 401
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=55.03 E-value=37 Score=28.53 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCCC-hhhhhhHHHHHHHHHHhcCC-CCEEEEEEeCCCccc
Q 013976 296 ESKDVLLEIYAPWC-GHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH 344 (432)
Q Consensus 296 ~~~~~lv~f~~~~c-~~c~~~~~~~~~la~~~~~~-~~~~~~~id~~~~~~ 344 (432)
.++.+||.|.-+.| ..|..+...+.++.+.+... .++.+..|.++...+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D 101 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD 101 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC
Confidence 46888888877777 58988887888888777643 367777777775533
No 402
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=53.76 E-value=25 Score=23.62 Aligned_cols=53 Identities=8% Similarity=0.109 Sum_probs=31.1
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc-cccchhhhhCCCCCCCcEEEE
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~-~~~~l~~~~~i~~~~~P~i~i 232 (432)
+++|..++ +.|+.....+.+.. +.+..+|..... ....+.+..|... .|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~--~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPT--VPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCC--cCEEEE
Confidence 34555666 88999888777654 667778887632 1122223334433 488844
No 403
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=52.94 E-value=34 Score=24.20 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=33.8
Q ss_pred ceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEE
Q 013976 171 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 171 ~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i 232 (432)
.+.+|..++ +.|...+..|.+. .+.+..+|.+.......+....|.... |++.+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~v--P~i~i 63 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTV--PQVFI 63 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCc--CeEEE
Confidence 355555666 8999998888643 266667777664323344444465555 99965
No 404
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=52.45 E-value=96 Score=26.61 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCcceEEEEE-eC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc-------------------------cccchhhh
Q 013976 168 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 219 (432)
Q Consensus 168 ~~~~~i~~~~-~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~ 219 (432)
++..++.||. .+ ..|......+.+++.+|.. .+.++.|.++... ....+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4333444443 33 7898888889999999874 3555555444221 02346677
Q ss_pred hCCC----CCCCcEEEEEeCCCCceecC----CCCCCHHHHHHHHHHH
Q 013976 220 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 259 (432)
Q Consensus 220 ~~i~----~~~~P~i~i~~~~~~~~y~~----~~~~~~~~i~~fi~~~ 259 (432)
||+. +...|..++++.+....+.. ....+.+++.+.++..
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8874 22347777787665333322 2235566666666543
No 405
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=52.03 E-value=49 Score=29.61 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred hhcCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEe
Q 013976 293 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 359 (432)
Q Consensus 293 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~ 359 (432)
+..++|+.+++.-+-||..|...+=.+--+-.+|.+. .+...+-|..+. -..+|++.|..
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d~------~pn~Ptl~F~~ 113 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYDN------YPNTPTLIFNN 113 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCcccC------CCCCCeEEEec
Confidence 3467799999999999999977654444444556553 344444333221 23566666653
No 406
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=51.03 E-value=22 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=25.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+.+|+.|.|+.|+.....+++- ++.+-.+|..+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~p~ 37 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTEPW 37 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcCCC
Confidence 4578999999999876555543 56666777666554
No 407
>PRK13599 putative peroxiredoxin; Provisional
Probab=50.73 E-value=1.4e+02 Score=26.11 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred EeC-cchhhhHHHHHHHHHhccC-ceEEEEEecCCcc------------------------cccchhhhhCCCC-----C
Q 013976 177 AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG-----E 225 (432)
Q Consensus 177 ~~~-~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~i~~-----~ 225 (432)
++| +.|......|.+++.+|.. .+.++.+.++... ....+++.||+.. .
T Consensus 38 a~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~ 117 (215)
T PRK13599 38 ADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTN 117 (215)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCc
Confidence 445 8899999999999999863 2444444333210 1235677788731 1
Q ss_pred CCcEEEEEeCCCCcee----cCCCCCCHHHHHHHHHHH
Q 013976 226 APKVLAYTGNDDAKKH----ILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 226 ~~P~i~i~~~~~~~~y----~~~~~~~~~~i~~fi~~~ 259 (432)
..|+.++++.++..++ ......+.+.|.+.++..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred eeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3588888876653332 223346888888888764
No 408
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=49.88 E-value=88 Score=30.08 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred cCCCcEEEEEeCCCChhhhhhHH-HHHHHH--HHhcCCCCEEEEEEeCCCccc----ccCCCCCCceEEEE-eCCCcccC
Q 013976 295 DESKDVLLEIYAPWCGHCQAFEP-TYNKLA--KHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFF-PAGNKSFD 366 (432)
Q Consensus 295 ~~~~~~lv~f~~~~c~~c~~~~~-~~~~la--~~~~~~~~~~~~~id~~~~~~----~~~~i~~~P~i~~~-~~g~~~~~ 366 (432)
..++.++|.|.+........+.. .|.... ..+.. .+..++|++..... .-|.+-.+|++.++ ..|..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe- 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE- 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE-
Confidence 34578888888888777777652 233322 22222 57788888776665 35788899999999 5565543
Q ss_pred ceeccCCCCHHHHHHHHHh
Q 013976 367 PINVDVDRTVVALYKFLKK 385 (432)
Q Consensus 367 ~~~y~g~~~~~~l~~fi~~ 385 (432)
...|..+++.|..-|.+
T Consensus 93 --vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 --VITGFVTADELASSIEK 109 (506)
T ss_pred --EeeccccHHHHHHHHHH
Confidence 66777777777666554
No 409
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=48.93 E-value=46 Score=22.69 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=36.4
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeccCCCCHHH
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 378 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~ 378 (432)
.+|+.++|..|...+-.+....- .+....+|...... .......+|++. .+|.. -.....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~---------l~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV---------LYESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE---------EEcHHH
Confidence 46788999999888766555422 23333344332211 223455788664 22221 234566
Q ss_pred HHHHHHh
Q 013976 379 LYKFLKK 385 (432)
Q Consensus 379 l~~fi~~ 385 (432)
|..+|.+
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 7777654
No 410
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=47.96 E-value=1e+02 Score=28.11 Aligned_cols=125 Identities=8% Similarity=-0.023 Sum_probs=71.6
Q ss_pred CCChhHHHHHHHHhhCCCceeeCCHHHHHHHh----hcCCeEEEEEecCCCcchHHHHHHHhccCCCceEEEeCcHHHHh
Q 013976 30 APSKDAIVTWIKKKIGPGIYNITTLDEAERVL----TSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAK 105 (432)
Q Consensus 30 ~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~~----~~~~~~vv~f~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~~~~ 105 (432)
..+.+.+.+++.+.-..|-+.-.+..++.++. +..+.+++...++.-+..++....+++...+..+.++.+..++-
T Consensus 40 ~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~ 119 (275)
T TIGR00762 40 DITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKSASM 119 (275)
T ss_pred CCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChHHHH
Confidence 47889999999764333334444666665444 34445555555555566777777777555555677766665544
Q ss_pred HcCCCCCCCCCeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCC
Q 013976 106 IFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESP 168 (432)
Q Consensus 106 ~~~~~~~~~~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~ 168 (432)
-.+.- +.+- .... ..-.+.+++.+|+.........-+..+++..+...|
T Consensus 120 ~~g~~---------v~~a----~~~~-~~G~s~~eI~~~l~~~~~~~~~~f~v~~L~~L~~gG 168 (275)
T TIGR00762 120 GLGLL---------VLEA----AKLA-EEGKSLEEILAKLEELRERTKLYFVVDTLEYLVKGG 168 (275)
T ss_pred HHHHH---------HHHH----HHHH-HcCCCHHHHHHHHHHHHhhcEEEEEECcHHHHHhcC
Confidence 43321 1110 0011 122467888888887666555556666666655444
No 411
>PRK10329 glutaredoxin-like protein; Provisional
Probab=47.87 E-value=84 Score=22.45 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=42.9
Q ss_pred EEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHH
Q 013976 174 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKI 252 (432)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i 252 (432)
+|-.++ +.|...+..|.+ +| +.|-.+|.+...-....+...|.. ..|++++- + .. -..++.+.|
T Consensus 5 lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~--~vPvv~i~--~--~~---~~Gf~~~~l 69 (81)
T PRK10329 5 IYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFR--QLPVVIAG--D--LS---WSGFRPDMI 69 (81)
T ss_pred EEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCC--CcCEEEEC--C--EE---EecCCHHHH
Confidence 333455 889988877754 23 788888888632011112333443 45999662 1 11 224889999
Q ss_pred HHHHHHHh
Q 013976 253 KTFGEDFL 260 (432)
Q Consensus 253 ~~fi~~~~ 260 (432)
.+.+...+
T Consensus 70 ~~~~~~~~ 77 (81)
T PRK10329 70 NRLHPAPH 77 (81)
T ss_pred HHHHHhhh
Confidence 98887754
No 412
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=20 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=17.8
Q ss_pred EEEeCCCChhhhhhHHHHHHH
Q 013976 302 LEIYAPWCGHCQAFEPTYNKL 322 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~l 322 (432)
++|++..|+.|..+...++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 679999999998887777776
No 413
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=45.98 E-value=62 Score=25.73 Aligned_cols=51 Identities=8% Similarity=0.013 Sum_probs=34.9
Q ss_pred eCCCcccccCCCCCCceEEEEeCCC--------cccCceeccCCCCHHHHHHHHHhcCC
Q 013976 338 DGTTNEHHRAKSDGFPTILFFPAGN--------KSFDPINVDVDRTVVALYKFLKKNAS 388 (432)
Q Consensus 338 d~~~~~~~~~~i~~~P~i~~~~~g~--------~~~~~~~y~g~~~~~~l~~fi~~~~~ 388 (432)
.++..--.+|+|+.+|++++.+.+. .....-...|..+.+.-++.+.+...
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 3333333799999999999998774 00011245688899888888886653
No 414
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=45.80 E-value=13 Score=25.48 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=28.8
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcc--c----ccCCCCCCceEEE
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H----HRAKSDGFPTILF 357 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~--~----~~~~i~~~P~i~~ 357 (432)
.+|+.++|..|...+-.+....- .+....++..... . .......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46888999999888766555521 2333444432211 1 2234457888864
No 415
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=45.57 E-value=27 Score=26.89 Aligned_cols=79 Identities=6% Similarity=0.026 Sum_probs=44.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCceEEEE-eCCCcccCceecc-C
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPTILFF-PAGNKSFDPINVD-V 372 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~i~~~-~~g~~~~~~~~y~-g 372 (432)
+.+|+.+.|+.|++....+++- ++.+..+|..+.... . +...+.+.--++ ++|... +-.... .
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y-~~l~~~~~ 71 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPY-KELGLADP 71 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchH-HHcCCCcc
Confidence 3578999999998876555544 566777787766651 1 121222222333 222211 111111 2
Q ss_pred CCCHHHHHHHHHhcCC
Q 013976 373 DRTVVALYKFLKKNAS 388 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~ 388 (432)
..+.+++++.|.++..
T Consensus 72 ~ls~~e~i~ll~~~P~ 87 (112)
T cd03034 72 ELSDEELIDAMAAHPI 87 (112)
T ss_pred CCCHHHHHHHHHhCcC
Confidence 5677888888888765
No 416
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=44.96 E-value=28 Score=26.94 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=43.3
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCcccc--c----CCCCCCce-EEEE-eCCCcccCceecc-C
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH--R----AKSDGFPT-ILFF-PAGNKSFDPINVD-V 372 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~--~----~~i~~~P~-i~~~-~~g~~~~~~~~y~-g 372 (432)
.+|+.|.|..|++....+++- ++.+..+|..+++.. . +.-.+.+. --++ +++... +-.... .
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~-~~l~~~~~ 72 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALY-KELGLSDP 72 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHH-HHcCCCcc
Confidence 578999999999877665553 466667787766651 1 11122222 1134 333211 111111 1
Q ss_pred CCCHHHHHHHHHhcCC
Q 013976 373 DRTVVALYKFLKKNAS 388 (432)
Q Consensus 373 ~~~~~~l~~fi~~~~~ 388 (432)
..+.+.+.+.|.++-.
T Consensus 73 ~ls~~e~i~~l~~~P~ 88 (114)
T TIGR00014 73 NLSDQELLDAMVAHPI 88 (114)
T ss_pred CCCHHHHHHHHHHCcC
Confidence 4567778888877754
No 417
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=44.43 E-value=37 Score=23.89 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=33.0
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcc--cccchhhhhCCCCCCCcEEEE
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLAY 232 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~--~~~~l~~~~~i~~~~~P~i~i 232 (432)
+++|..++ +.|......+.++... ..+..++..... ....+.+..|.... |++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~--P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV--PNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence 45566677 8999999888887663 455566655320 01123344465555 88844
No 418
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=44.35 E-value=48 Score=22.85 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=37.3
Q ss_pred EEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHH
Q 013976 175 LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIK 253 (432)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~ 253 (432)
+..++ +.|+..+..|.+ ..+.|..+|..+.......+...|... .|++++-+ . ..-+.++.+.|.
T Consensus 4 y~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~--vP~v~~~g-~-----~~~~G~~~~~~~ 69 (72)
T TIGR02194 4 YSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQ--VPVIVADG-D-----LSWSGFRPDKLK 69 (72)
T ss_pred EeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcc--cCEEEECC-C-----cEEeccCHHHHH
Confidence 33455 889988877764 237777888876321122223335544 49985531 1 123447777765
Q ss_pred H
Q 013976 254 T 254 (432)
Q Consensus 254 ~ 254 (432)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 5
No 419
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=43.99 E-value=1.3e+02 Score=22.28 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=45.5
Q ss_pred cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976 170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 248 (432)
Q Consensus 170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~ 248 (432)
++.+.+|.+. +.|+.+...++++|.-- +++.+...+.. . ..|++++...+......|-|-..
T Consensus 20 pV~l~~f~~~~~~~~e~~~ll~e~a~lS-dkI~~~~~~~~------~----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 20 PVELVASLDDSEKSAELLELLEEIASLS-DKITLEEDNDD------E----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEecCC------C----------CCCEEEEecCCCcccEEEEecCC
Confidence 5556666665 78988888888888764 45666433211 1 24999887655333355667666
Q ss_pred HHHHHHHHHHH
Q 013976 249 LDKIKTFGEDF 259 (432)
Q Consensus 249 ~~~i~~fi~~~ 259 (432)
-.++..||..+
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 66677776553
No 420
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=43.01 E-value=76 Score=22.26 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred EEEEEeC--cchhhhHHHHHHHHHhc-cCceEEEEEecCCcccccchhhhhCCCCCCCcEEE
Q 013976 173 LLLFAVS--NDSEKLLPVFEEAAKSF-KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 231 (432)
Q Consensus 173 i~~~~~~--~~~~~~~~~~~~~a~~~-~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~ 231 (432)
+.+|... ...+.....++++.+++ .+...+=.+|..+ ++.+++.+++-.. |+++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~---~P~lAe~~~ivAt--PtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK---QPQLAEEDKIVAT--PTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc---CHhHHhhCCEEEe--chhh
Confidence 4455444 55677777788877776 5678888999998 7799999998777 7775
No 421
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=42.88 E-value=56 Score=22.36 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=28.6
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc------ccCCCCCCceEE
Q 013976 302 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTIL 356 (432)
Q Consensus 302 v~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P~i~ 356 (432)
.+|+.++|..|...+-.+.+..- .+....+|...... .......+|+++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46889999999887666655421 23444445333221 122445789985
No 422
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=40.00 E-value=71 Score=25.92 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.7
Q ss_pred cceEEEEEeC--cchhhhHHHHHHHHHhc--cCceEEEEEecCC
Q 013976 170 KNQLLLFAVS--NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDN 209 (432)
Q Consensus 170 ~~~i~~~~~~--~~~~~~~~~~~~~a~~~--~~~i~f~~vd~~~ 209 (432)
++.|..|.+. ++|.++...+.++.+++ .+++.|...+...
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 4455555555 89999999999999999 7899999998754
No 423
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=38.86 E-value=75 Score=21.76 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=37.4
Q ss_pred EEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHH
Q 013976 173 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDK 251 (432)
Q Consensus 173 i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~ 251 (432)
++|..++ +.|.+.+..|.+. .+.+..+|.........+....|.... |++++- + ... | ..+.
T Consensus 4 ~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~v--P~ifi~--g--~~i---g--g~~~ 66 (72)
T cd03029 4 SLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTV--PQVFID--G--ELI---G--GSDD 66 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCc--CeEEEC--C--EEE---e--CHHH
Confidence 4444555 8899988877752 366777777664311222222355444 998542 1 221 2 4677
Q ss_pred HHHHH
Q 013976 252 IKTFG 256 (432)
Q Consensus 252 i~~fi 256 (432)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77765
No 424
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.45 E-value=39 Score=26.32 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=25.3
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+.+|+.|.|+.|+.....+++- ++.+-.+|......
T Consensus 3 itiy~~p~C~t~rka~~~L~~~--------gi~~~~~~y~~~~~ 38 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH--------GIEYTFIDYLKTPP 38 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEEeecCCC
Confidence 5689999999999887666554 45555566555544
No 425
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.12 E-value=68 Score=21.81 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=27.9
Q ss_pred CceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCcc
Q 013976 352 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 393 (432)
Q Consensus 352 ~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~ 393 (432)
=|.+++|+.| .+.+..+.+...+++++|+...-..
T Consensus 17 gPvl~vYpeg-------vWY~~V~p~~a~rIv~~hl~~Gr~V 51 (64)
T COG3411 17 GPVLVVYPEG-------VWYTRVDPEDARRIVQSHLLGGRPV 51 (64)
T ss_pred CCEEEEecCC-------eeEeccCHHHHHHHHHHHHhCCCcc
Confidence 4999999998 3456799999999999998744433
No 426
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=33.72 E-value=1e+02 Score=23.75 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhcCCCCEEEEEEeCCCcccccCCCCCCceEEEEeC
Q 013976 314 AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 360 (432)
Q Consensus 314 ~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~~~i~~~P~i~~~~~ 360 (432)
.+.+.+..+.+........ +.+.++.+--.+|+|+.+|++++-+.
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4455555555555442112 34444555558999999999999987
No 427
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.85 E-value=84 Score=27.62 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=34.4
Q ss_pred ccCCCCCCceEEEEeCCCcccCceeccCCCCHHHHHHHHHhcCCCCCccc
Q 013976 345 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQ 394 (432)
Q Consensus 345 ~~~~i~~~P~i~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~~ 394 (432)
.+++|+++|++++ .+ +. ...|..+.+-+..-|.+..+......
T Consensus 178 ~e~gI~gVP~fv~--d~-~~----~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 178 QEMGIRGVPTFVF--DG-KY----AVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHCCCccCceEEE--cC-cE----eecCCCCHHHHHHHHHHHHhcccccC
Confidence 4679999999999 33 22 67899999999999999988766543
No 428
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=31.00 E-value=1.8e+02 Score=20.46 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=39.7
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 358 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~--~~~~i~~~P~i~~~ 358 (432)
.|.+|-+............+.++-..+.+ ..+.+-.||+.+++. ...+|-.+||++=-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 34555555545555555555555555542 378999999999988 68899999997644
No 429
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=30.28 E-value=69 Score=27.00 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.5
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEe
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 338 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id 338 (432)
.|.+|+..-|+.|-...+.+.++...+.+. .+.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccc
Confidence 477899999999999999999999999431 44444443
No 430
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=29.42 E-value=59 Score=28.82 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=30.7
Q ss_pred ccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHH
Q 013976 213 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 259 (432)
Q Consensus 213 ~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~ 259 (432)
+..+++.+|+++. |++++. ++ + .+.|..+.+.|.++++..
T Consensus 191 ~~~la~~lgi~gT--Ptiv~~-~G--~--~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGT--PAIVLS-NG--T--LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccc--cEEEEc-CC--e--EeeCCCCHHHHHHHHHHc
Confidence 5678899999998 999743 22 2 347888999999998863
No 431
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=2e+02 Score=25.39 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 013976 298 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 341 (432)
Q Consensus 298 ~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~ 341 (432)
...++.|....|++|+...+.+.+......+. ++.+..+....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~~ 127 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFLD 127 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecCC
Confidence 56888999999999988888877754444442 44555444443
No 432
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.61 E-value=1e+02 Score=25.90 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLR 327 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~ 327 (432)
+.+|+.+.|+.|-...+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999984
No 433
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=28.54 E-value=1.2e+02 Score=22.21 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=42.4
Q ss_pred EEEEeC-cchhhhHHHHHHHHHhc-cCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCC
Q 013976 174 LLFAVS-NDSEKLLPVFEEAAKSF-KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 236 (432)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~a~~~-~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~ 236 (432)
++++.. +..+.....++++.+.+ .|...+=.+|..+ ++.+++.+++-.. |+++=..+.
T Consensus 8 Lyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~---qP~lAE~~~IvAT--PtLIK~~P~ 67 (87)
T TIGR02654 8 LYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK---NPQLAEEDKILAT--PTLSKILPP 67 (87)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCEEEe--cHHhhcCCC
Confidence 445555 67777777788876654 5678888889988 7899999999777 887544333
No 434
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=27.78 E-value=1.7e+02 Score=21.11 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=29.9
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc---ccCCCCCCceEEE
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILF 357 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~---~~~~i~~~P~i~~ 357 (432)
.+.+|+.+.|..|...+-.+... +. .+.+..++...... .......+|.+..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~-----gl-~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK-----NI-PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc-----CC-CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 46678889999998876555443 21 34444455432211 1234557888864
No 435
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=27.28 E-value=1.2e+02 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=37.5
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC--CCCEEEEEEeCCCcc
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG--VDSIVIAKMDGTTNE 343 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~--~~~~~~~~id~~~~~ 343 (432)
.+..+||-+-..+|..|......++.|-.++.+ .+++.|..||-....
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~ 74 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEH 74 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcc
Confidence 346677777778999999988899999988865 358999999955433
No 436
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.19 E-value=1.4e+02 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=36.2
Q ss_pred hhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHHHHhcCCcCc
Q 013976 216 VSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKP 266 (432)
Q Consensus 216 l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~~~~~g~l~~ 266 (432)
..+.+||++. |++++ ...|...|-.+++.+..-|++.++.+..+
T Consensus 176 ~A~e~gI~gV--P~fv~-----d~~~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 176 AAQEMGIRGV--PTFVF-----DGKYAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHCCCccC--ceEEE-----cCcEeecCCCCHHHHHHHHHHHHhccccc
Confidence 4688999998 99977 24678899999999999999998765543
No 437
>PRK10853 putative reductase; Provisional
Probab=27.12 E-value=77 Score=24.68 Aligned_cols=36 Identities=8% Similarity=-0.113 Sum_probs=26.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+.+|+.+.|+.|++....+++- ++.+-.+|.-+++.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k~p~ 37 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRVDGL 37 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehccCCc
Confidence 4678889999999877666543 56666777666554
No 438
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=27.07 E-value=1.1e+02 Score=25.32 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=29.5
Q ss_pred cceEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEecC
Q 013976 170 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD 208 (432)
Q Consensus 170 ~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~~ 208 (432)
..++.|+... +.|..+.+.+.++..++.+++.|..+...
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 3345555555 99999999999999999888887766543
No 439
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=26.79 E-value=84 Score=22.42 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCceecccCCCCCHHHHHHHHHhc
Q 013976 115 RPALVMVKKETEKISYFADGKFDKSTIADFVFSN 148 (432)
Q Consensus 115 ~p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~ 148 (432)
.|.|+++...++...+..-..|+.+.|..|+...
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 4999999876654444435789999999999865
No 440
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=24.96 E-value=1.7e+02 Score=25.30 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=45.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc----ccC----------------CCCCCceEEEEeC
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRA----------------KSDGFPTILFFPA 360 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~----~~~----------------~i~~~P~i~~~~~ 360 (432)
|=+|++.+|+.|-..-..|.+|+.. . ++......++=-+. +.| +..++-|--++-+
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~--~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVn 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR--P--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVN 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH--T--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEET
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC--C--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEEC
Confidence 3478899999999999999999988 2 46666666554332 122 4444433334456
Q ss_pred CCcccCceeccCCCCHHHHHHHHHhcCCCC
Q 013976 361 GNKSFDPINVDVDRTVVALYKFLKKNASIP 390 (432)
Q Consensus 361 g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 390 (432)
|.. .....+...+..-|.+....+
T Consensus 78 G~~------~~~g~~~~~~~~ai~~~~~~~ 101 (202)
T PF06764_consen 78 GRE------HRVGSDRAAVEAAIQAARARP 101 (202)
T ss_dssp TTE------EEETT-HHHHHHHHHHHHHTT
T ss_pred Cee------eeeccCHHHHHHHHHHhhccC
Confidence 654 233577788888888776553
No 441
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=1.5e+02 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=33.1
Q ss_pred ceEEEEEeC---cchhhhHHHHHHHHHhccC-ceEEEEEecCCcccccchhhhhCCC
Q 013976 171 NQLLLFAVS---NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGIT 223 (432)
Q Consensus 171 ~~i~~~~~~---~~~~~~~~~~~~~a~~~~~-~i~f~~vd~~~~~~~~~l~~~~~i~ 223 (432)
++|++|.|. +.|....-.|++...+|+. .+.++-|-.+...-++.+++.+|++
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 455555454 7899999999999988875 2333333333322256667777774
No 442
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=23.92 E-value=1.8e+02 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred eEEEEEeC-cchhhhHHHHHHHHHhccCceEEEEEec
Q 013976 172 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM 207 (432)
Q Consensus 172 ~i~~~~~~-~~~~~~~~~~~~~a~~~~~~i~f~~vd~ 207 (432)
+++|+... +.|..+.+.+.++...+ +++.+...+.
T Consensus 9 i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 44 (154)
T cd03023 9 IVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEF 44 (154)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeC
Confidence 44455555 99999999999988776 4576666554
No 443
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.73 E-value=2.7e+02 Score=21.33 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCc
Q 013976 296 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN 342 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~ 342 (432)
.++.+||.=.|+.|+.-. ....|++|..+|+.. .+.+...-|..-
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHh
Confidence 367888888899999888 667899999999863 677777776553
No 444
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=23.63 E-value=2.5e+02 Score=24.33 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhc-CC-CCEEEEEEeCCCccc
Q 013976 296 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLR-GV-DSIVIAKMDGTTNEH 344 (432)
Q Consensus 296 ~~~~~lv~f~~~~c~-~c~~~~~~~~~la~~~~-~~-~~~~~~~id~~~~~~ 344 (432)
++++++|+|--+.|. -|..+...+..+-+.+. .. .++.++.|-++.+.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD 117 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD 117 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence 568888888766665 78888888888887777 22 245555554444433
No 445
>PRK09301 circadian clock protein KaiB; Provisional
Probab=23.24 E-value=2.6e+02 Score=21.18 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=46.8
Q ss_pred EEEEEeC-cchhhhHHHHHHHHHh-ccCceEEEEEecCCcccccchhhhhCCCCCCCcEEEEEeCCCCceecCCCCCC
Q 013976 173 LLLFAVS-NDSEKLLPVFEEAAKS-FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 248 (432)
Q Consensus 173 i~~~~~~-~~~~~~~~~~~~~a~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~ 248 (432)
-+|++.. +..+.....++++.+. +.+...+=.+|..+ ++.+++.++|-.. |+++=..+...+ +.-|+++
T Consensus 10 rLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~---qPelAE~~~IvAT--PTLIK~~P~P~r--riiGDls 80 (103)
T PRK09301 10 KLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK---NPQLAEEDKILAT--PTLAKILPPPVR--KIIGDLS 80 (103)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCeEEe--cHHhhcCCCCcc--eeecccc
Confidence 3445555 6677777778887665 45678888889988 7899999999877 887544333222 2346553
No 446
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=22.94 E-value=3.3e+02 Score=25.35 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=46.4
Q ss_pred CeEEEEecCCCceecccCCCCCHHHHHHHHHhcCCCceeecCCCchhhhccCCCcceEEEEEeCcchhhhHHHHHHHHHh
Q 013976 116 PALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS 195 (432)
Q Consensus 116 p~i~l~~~~~~~~~~y~~g~~~~~~l~~fi~~~~~p~v~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ 195 (432)
-++.+|+......+-|. -.+..+...|+.....++...+.....-..-.++.-..++|| +..+|+.+...+.++-..
T Consensus 56 GtffvY~R~~~p~~gf~--i~NR~~~~nf~e~lt~d~~~~~~g~fl~~rn~s~~i~glWf~-d~~~~~ri~~L~~~ll~~ 132 (335)
T KOG2868|consen 56 GTFFVYKRDASPRHGFL--IVNRLSPDNFVEPLTKDLIFQLQGPFLLYRNESGSIYGLWFY-DKNDCQRIATLLKKLLYR 132 (335)
T ss_pred eEEEEEEccCCCccceE--eecCCChhhhhhhcCCCeeeeecCcceeeeccccceeEEEec-CcchHHHHHHHHHHHHHH
Confidence 56888886554444331 234555666666666665555554332222222222234443 448899999999998888
Q ss_pred ccC
Q 013976 196 FKG 198 (432)
Q Consensus 196 ~~~ 198 (432)
+..
T Consensus 133 ~~~ 135 (335)
T KOG2868|consen 133 YGL 135 (335)
T ss_pred hhh
Confidence 765
No 447
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=22.32 E-value=67 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=13.9
Q ss_pred chhhhhCCCCCCCcEEEEEeCCC-CceecCCCCCCHHHH
Q 013976 215 PVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTLDKI 252 (432)
Q Consensus 215 ~l~~~~~i~~~~~P~i~i~~~~~-~~~y~~~~~~~~~~i 252 (432)
.+.+.+||++. |++++++... .......|..+.+.+
T Consensus 138 ~la~~m~I~~~--Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 138 QLAREMGITGF--PTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHTT-SSS--SEEEEE--------------------
T ss_pred HHHHHcCCCCC--CEEEEEeccccccccccccccccccc
Confidence 46788999998 9999997332 234455665555443
No 448
>PRK10026 arsenate reductase; Provisional
Probab=22.19 E-value=98 Score=25.03 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=24.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 301 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 301 lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
+.+|+.|.|+.|++....+++- ++.+-.+|.-+.+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~--------gi~~~~~d~~~~pp 39 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS--------GTEPTIIHYLETPP 39 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCcEEEeeeCCCc
Confidence 5678999999998877665554 45555666555443
No 449
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.00 E-value=1.3e+02 Score=22.92 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=38.5
Q ss_pred EeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccccc--C----CCCCCceEEEE-eCCCcccCcee-c-cCCC
Q 013976 304 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR--A----KSDGFPTILFF-PAGNKSFDPIN-V-DVDR 374 (432)
Q Consensus 304 f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~~~--~----~i~~~P~i~~~-~~g~~~~~~~~-y-~g~~ 374 (432)
|+.+.|..|+.+...+++- ++.+-.+|..+.+... + ...+.+.--++ +.|... +... . ....
T Consensus 1 Y~~~~C~t~rka~~~L~~~--------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~-k~l~~~~~~~~ 71 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTY-KELGKLKKDDL 71 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHH-HHTTHHHCTTS
T ss_pred CcCCCCHHHHHHHHHHHHc--------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchH-hhhhhhhhhhh
Confidence 6789999999987766653 5777778988766521 1 11121111122 222111 0000 0 1357
Q ss_pred CHHHHHHHHHhcCC
Q 013976 375 TVVALYKFLKKNAS 388 (432)
Q Consensus 375 ~~~~l~~fi~~~~~ 388 (432)
+.+.+++.|.++..
T Consensus 72 s~~e~i~~l~~~p~ 85 (110)
T PF03960_consen 72 SDEELIELLLENPK 85 (110)
T ss_dssp BHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHhChh
Confidence 88999999988864
No 450
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=21.88 E-value=3.9e+02 Score=21.27 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.8
Q ss_pred EEEeCcHHHHhHcCCCCCCCCCeEEEEecC
Q 013976 95 FYQTTNPDVAKIFHLDSKVNRPALVMVKKE 124 (432)
Q Consensus 95 F~~~~~~~~~~~~~~~~~~~~p~i~l~~~~ 124 (432)
-+...|+.+.++|+++. .|++++.+..
T Consensus 55 ~~v~IdP~lF~~f~I~~---VPa~V~~~~~ 81 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITA---VPAFVVVKDG 81 (130)
T ss_pred CcEEEChHHHhhcCceE---cCEEEEECCC
Confidence 45667899999999987 7999999864
No 451
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.63 E-value=1.1e+02 Score=24.11 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=25.9
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcCCCCEEEEEEeCCCccc
Q 013976 300 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 344 (432)
Q Consensus 300 ~lv~f~~~~c~~c~~~~~~~~~la~~~~~~~~~~~~~id~~~~~~ 344 (432)
.+.+|+-|.|+.|++....+++- ++.+-.+|.-+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~--------gi~~~~~d~~~~p~ 38 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS--------GHDVEVQDILKEPW 38 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC--------CCCcEEEeccCCCc
Confidence 35678899999999887666654 45666666655544
No 452
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=21.39 E-value=1.7e+02 Score=21.27 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=22.3
Q ss_pred cCCCCCChhHHHHHHHHhhCCCceeeCCHHHHHHH
Q 013976 26 IMAAAPSKDAIVTWIKKKIGPGIYNITTLDEAERV 60 (432)
Q Consensus 26 ~Y~G~~~~~~i~~~l~~~~~~~~~~i~~~~~l~~~ 60 (432)
.|...-+-++|++|+.+.+.- .|.+.+++|
T Consensus 25 ty~nt~sG~~Iv~~L~~n~~~-----~s~~~aE~f 54 (84)
T cd04436 25 TYQNTSSGSEIVSWLQENMPE-----KDLDAAEAF 54 (84)
T ss_pred cccCcccHHHHHHHHHHcCCC-----CCHHHHHHH
Confidence 366778889999999999954 455555544
No 453
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=20.00 E-value=1.4e+02 Score=26.84 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=28.1
Q ss_pred chhhhhCCCCCCCcEEEEEeCCCCceecCCCCCCHHHHHHHHH
Q 013976 215 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE 257 (432)
Q Consensus 215 ~l~~~~~i~~~~~P~i~i~~~~~~~~y~~~~~~~~~~i~~fi~ 257 (432)
.+.+.+|++++ |++++.+.+ +......|....+.|.+.+.
T Consensus 210 ~l~~~lGv~GT--Paiv~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANAT--PAIYYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 35677899998 999777533 34334568778888877653
Done!