Query 013977
Match_columns 432
No_of_seqs 160 out of 218
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wh6_B BCL-2-like protein 11; 19.4 59 0.002 20.9 1.9 14 260-273 5-18 (26)
2 3kj0_B BCL-2-like protein 11; 16.0 79 0.0027 20.5 1.9 15 260-274 7-21 (27)
3 2dwk_A Protein RUFY3; RUN doma 12.0 67 0.0023 28.9 1.0 16 317-332 131-146 (180)
4 2x4w_B Histone H3.2; transcrip 7.4 1E+02 0.0035 18.7 0.2 10 26-35 16-25 (26)
5 1dp7_P MHC class II transcript 7.1 81 0.0028 25.0 -0.4 23 360-383 47-69 (76)
6 2lsj_B DNA polymerase kappa; R 9.7 97 0.0033 20.1 0.0 9 324-332 5-13 (26)
7 1c76_A Staphylokinase, SAK; be 6.9 1E+02 0.0036 27.0 0.1 24 348-371 15-48 (136)
8 3lgb_A DNA primase large subun 6.6 96 0.0033 28.8 -0.3 36 344-383 59-96 (194)
9 2ys2_A Cytoplasmic tyrosine-pr 5.7 1.4E+02 0.0047 22.0 0.2 9 321-329 13-21 (50)
10 3stb_C RNA-editing complex pro 5.4 1.8E+02 0.006 25.9 0.7 17 314-330 95-112 (148)
No 1
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=19.36 E-value=59 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 013977 260 EAWKVREIARIKRD 273 (432)
Q Consensus 260 eaWKlRELkRiKRd 273 (432)
+.|..+||.||--+
T Consensus 5 E~~iAqELRRIGDe 18 (26)
T 2wh6_B 5 EIWIAQELRRIGDE 18 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 68999999999643
No 2
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=16.00 E-value=79 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013977 260 EAWKVREIARIKRDR 274 (432)
Q Consensus 260 eaWKlRELkRiKRdR 274 (432)
+.|-.+||.||--+-
T Consensus 7 E~wiAqELRRIGDeF 21 (27)
T 3kj0_B 7 EIWYAQELRRIGDEF 21 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 679999999996543
No 3
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=11.98 E-value=67 Score=28.86 Aligned_cols=16 Identities=13% Similarity=0.553 Sum_probs=14.0
Q ss_pred hhHHhhhccccccccc
Q 013977 317 RFMQKYYHKGAFFQSD 332 (432)
Q Consensus 317 ~FmQKYYHkGAFf~D~ 332 (432)
..+.+||+.+||..|+
T Consensus 131 ~~l~~~Y~~~All~~~ 146 (180)
T 2dwk_A 131 ELLSEFYEVNALMMEE 146 (180)
T ss_dssp HHHTTTBCTTSGGGSH
T ss_pred HHHHhhCCCCccccCc
Confidence 3678999999999985
No 4
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=7.41 E-value=1e+02 Score=18.70 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=8.2
Q ss_pred ceeeecCCCC
Q 013977 26 KVKRYWPGKA 35 (432)
Q Consensus 26 KV~RY~aGKr 35 (432)
|.+||.||-+
T Consensus 16 k~~RyRPGtv 25 (26)
T 2x4w_B 16 KPHRYRXXXX 25 (26)
T ss_pred cccccccccC
Confidence 6889999953
No 5
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=7.10 E-value=81 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=17.4
Q ss_pred ccccCchhhhhcccCcCCCCcccc
Q 013977 360 DKTILPKVMQVKHFGRSGRTKWTH 383 (432)
Q Consensus 360 dk~~LPkvMQvknfGk~GrTKyTh 383 (432)
=+++.|. +..|..|-.|++||-.
T Consensus 47 ir~~FP~-l~trRLg~rG~skyhy 69 (76)
T 1dp7_P 47 IRSVFMG-LRTRRLGTRGNSKYHY 69 (76)
T ss_dssp HHHHSTT-CEEEEESSTTCCEEEE
T ss_pred HHHHCCC-ceeeeccccCCccEEE
Confidence 4566777 5677799999999854
No 6
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=9.68 E-value=97 Score=20.06 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=7.0
Q ss_pred ccccccccc
Q 013977 324 HKGAFFQSD 332 (432)
Q Consensus 324 HkGAFf~D~ 332 (432)
|||.||.-.
T Consensus 5 ~K~SFFdKK 13 (26)
T 2lsj_B 5 HKKSFFDKK 13 (26)
Confidence 889999653
No 7
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=6.90 E-value=1e+02 Score=27.04 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=17.1
Q ss_pred ccCCCCC---------cccccccccC-chhhhhc
Q 013977 348 RDFSAPT---------GEDKMDKTIL-PKVMQVK 371 (432)
Q Consensus 348 RDfs~pt---------~eD~~dk~~L-PkvMQvk 371 (432)
+||-.|| |.|.-..++| |.+|+++
T Consensus 15 kdY~E~~G~~LMiNVTGvD~~G~~ilsP~Y~e~~ 48 (136)
T 1c76_A 15 ASYFEPTGPYLMVNVTGVDGKGNELLSPHYVEFP 48 (136)
T ss_dssp -CCSCCSSCEEEEEEEEECTTCCEEECCCCEEEE
T ss_pred cccccCCCCEEEEEEeeecCCCCEEeccccEEEe
Confidence 6666665 5666666777 9999987
No 8
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=6.63 E-value=96 Score=28.79 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=26.6
Q ss_pred ccccccCCCCCcccccccccCchhhhhcc-cCcCC-CCcccc
Q 013977 344 EIYHRDFSAPTGEDKMDKTILPKVMQVKH-FGRSG-RTKWTH 383 (432)
Q Consensus 344 ~i~kRDfs~pt~eD~~dk~~LPkvMQvkn-fGk~G-rTKyTh 383 (432)
.+++.-|+- ...|.|||.. ..||+. +|..| +|.||=
T Consensus 59 ~f~r~~F~k-~~~d~F~K~y---~Y~IrH~yG~eG~r~~Y~p 96 (194)
T 3lgb_A 59 KFWSEAFTN-MTMEKFNKEY---RYSFRHNYGLEGNRINYKP 96 (194)
T ss_dssp HHHHHHSTT-SCHHHHHHHT---HHHHHHHTTCSTTCCCCCC
T ss_pred HHHHHHccc-CChhhhccce---eeeeeeecCCCCCCcccCC
Confidence 456666774 3357789865 679997 99998 699974
No 9
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=5.70 E-value=1.4e+02 Score=21.99 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=6.8
Q ss_pred hhhcccccc
Q 013977 321 KYYHKGAFF 329 (432)
Q Consensus 321 KYYHkGAFf 329 (432)
-.||-|+|-
T Consensus 13 ~~YHPg~~~ 21 (50)
T 2ys2_A 13 VKYHSGFFV 21 (50)
T ss_dssp CCCCSSCEE
T ss_pred hhcCCCccc
Confidence 457999983
No 10
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=5.43 E-value=1.8e+02 Score=25.94 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=12.0
Q ss_pred ch-hhhHHhhhccccccc
Q 013977 314 QK-WRFMQKYYHKGAFFQ 330 (432)
Q Consensus 314 gk-~~FmQKYYHkGAFf~ 330 (432)
|+ ..|+++|||||.-..
T Consensus 95 g~lAE~i~~ylkkG~rVl 112 (148)
T 3stb_C 95 SDYSSRVKEQLRDGEWFL 112 (148)
T ss_dssp HHHHHHHHHHCCTTCEEE
T ss_pred ChHHHHHHHHhcCCCEEE
Confidence 45 568888888886544
Done!