Query 013979
Match_columns 432
No_of_seqs 160 out of 218
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 00:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1425 Microfibrillar-associa 100.0 4E-126 8E-131 941.5 27.6 417 1-429 1-430 (430)
2 PF06991 Prp19_bind: Splicing 100.0 3.7E-96 8E-101 719.4 18.7 261 156-425 14-276 (276)
3 PF06991 Prp19_bind: Splicing 90.5 2.9 6.3E-05 42.3 11.1 36 244-279 105-140 (276)
4 PF04889 Cwf_Cwc_15: Cwf15/Cwc 86.9 1.1 2.4E-05 44.5 5.3 23 260-282 148-170 (244)
5 KOG1425 Microfibrillar-associa 69.2 1.4E+02 0.003 32.0 13.9 77 205-282 206-286 (430)
6 KOG2580 Mitochondrial import i 61.3 4.2 9.1E-05 43.5 1.4 21 249-270 433-453 (459)
7 PTZ00266 NIMA-related protein 40.2 5.6E+02 0.012 30.9 14.2 7 74-80 269-275 (1021)
8 PF08648 DUF1777: Protein of u 33.3 41 0.0009 31.2 3.1 51 366-419 128-178 (180)
9 PF09151 DUF1936: Domain of un 27.5 19 0.00041 25.5 -0.2 16 6-21 8-23 (36)
10 PF07803 GSG-1: GSG1-like prot 27.3 18 0.00039 32.5 -0.4 21 312-332 75-95 (118)
11 PF15119 APOC4: Apolipoprotein 26.7 27 0.00059 30.1 0.6 13 312-324 49-61 (99)
12 PF06244 DUF1014: Protein of u 26.4 4.3E+02 0.0094 23.9 8.2 22 253-274 70-95 (122)
13 KOG4404 Tandem pore domain K+ 25.3 87 0.0019 32.9 4.0 47 279-331 41-88 (350)
14 PF07767 Nop53: Nop53 (60S rib 25.2 6.2E+02 0.013 26.5 10.4 18 177-197 268-285 (387)
15 smart00593 RUN domain involved 24.6 37 0.00081 26.4 1.0 17 317-333 26-42 (64)
16 KOG4156 Claspin, protein media 24.4 6E+02 0.013 29.5 10.4 19 313-331 1212-1230(1329)
17 KOG1029 Endocytic adaptor prot 24.3 7.6E+02 0.017 29.3 11.3 41 256-296 372-414 (1118)
No 1
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=100.00 E-value=3.9e-126 Score=941.50 Aligned_cols=417 Identities=52% Similarity=0.771 Sum_probs=364.1
Q ss_pred CCcccc-cccchhhhhcccccccCccceeeecCCCCCCCCCCccchhHHHHhhhhhhcccCCCCccccCCCCCChHHHHH
Q 013979 1 MSVTAG-VSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDIEEDNDIRMSRAAALDKAFPRKEDSDIGRKDDPRLRRL 79 (432)
Q Consensus 1 Ms~~~~-tagavpv~nekge~~m~kvKV~RY~aGKrPdyA~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~DpRLrRl 79 (432)
||+++| .-.||||+ +||+++|+||||+||||||+|+||+...+|+++.++.......++|..+..+....+|||||||
T Consensus 1 ms~~~~~~~saipvr-ekg~~~m~kvkv~ryv~gk~peya~sseed~d~~~~~~~~~~~a~~ee~~~~~~~~ddprlrrl 79 (430)
T KOG1425|consen 1 MSVTASVIQSAIPVR-EKGEGSMQKVKVRRYVSGKAPEYARSSEEDDDVDFIKDRKRDRAEPEEDEEDVARIDDPRLRRL 79 (430)
T ss_pred CCccccccccccchh-hhcccccceeeeeeecCCCCcccccccccchhhhHHHHHHHHhcCcchhhcccccccCcccccc
Confidence 787763 44699999 9999999999999999999999999766666666666666667888888888889999999999
Q ss_pred Hhhhc--ccch-hhhhhhhccccccccccchhhh--hccCCCcccccHHHHHHHHHHHHHHHHhhHHHHHhcCchhhhhh
Q 013979 80 AESRI--DNRD-EIRADHRRIRQAEIVSTEEEET--RQEGLDMEEEDEEALEERRRRIREKLLQREQEEAALLPEEEEEA 154 (432)
Q Consensus 80 ~~~~~--~~~~-~~~~~~R~i~e~ev~~~~~~~~--~~e~~~eee~De~~~e~RR~~iR~ral~r~~EEe~~~~~~ee~e 154 (432)
.++.. ++++ ++.++||.|++|||+.+.+++. ..+++..++.|++++++||.|||.|++++.+++..+++.+.+.+
T Consensus 80 ~~~~~~~e~~E~e~~e~hr~i~e~Ei~~~~eee~~~~n~~~~~~e~d~~e~E~rr~~~r~r~~qr~~ee~~v~~~e~E~e 159 (430)
T KOG1425|consen 80 PQRPVRSEDVEGERSERHREIDEPEISDEEEEEGSIRNESERDEETDEEELERRREMLRSRNLQRINEEQEVLNSEDEYE 159 (430)
T ss_pred cccccccchhhhhhhhhhhcccchhhcccHhhhhhhcccccccccCcHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhcc
Confidence 99876 6777 7899999999999998655554 22455667889999999999999999999888866666555444
Q ss_pred ---hhhhhhhcccccCCchhhhhcccccccccccCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013979 155 ---VEEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRK- 230 (432)
Q Consensus 155 ---~~eeeeeeSe~es~SEeE~~~~~~lKPVFV~K~~R~Ti~e~e~~e~ee~~~e~~~~~~~eeRk~et~~lv~eei~k- 230 (432)
++++++++|+++|||+++ ..|+||||||+|.+|.||++++..++.+..+++.+++.+++||++|.+||.+++.+
T Consensus 160 ~~eeseee~Se~ee~tdsEdD--~~prlkpvfvrkrdR~tlqe~e~e~~k~k~le~eakr~aEerk~~T~q~V~Ee~~k~ 237 (430)
T KOG1425|consen 160 SDEESEEEESESEEETDSEDD--MEPRLKPVFVRKRDRTTLQEREREAKKEKNLEKEAKRDAEERKRETLQIVEEEVIKK 237 (430)
T ss_pred cchhhhccccccccccccccc--cccccccceehhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333345555666665 45999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHHhhhhhhccCCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 013979 231 DEEIQKNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKPAP 310 (432)
Q Consensus 231 e~~~~~~~~~e~~~~~vDddDeld~E~EyeaWKlRELkRiKRdRe~re~~ekEk~EieRrrnmteEER~~~~~~~~k~~~ 310 (432)
++..++....++.+++|+|||++|++.||+|||||||+||||||++++++++|+++|+++||||++||+++++.||++++
T Consensus 238 El~~k~~~~~~a~l~dv~tdDein~~~eYEaWKlRelkR~KRdRe~reeleREK~eIek~rnMteEERr~~lrknpkv~t 317 (430)
T KOG1425|consen 238 ELEEKKTKNNEALLNDVDTDDEINEEEEYEAWKLRELKRIKRDREEREELEREKAEIEKMRNMTEEERRAELRKNPKVST 317 (430)
T ss_pred HHHhhccccchHHhhcccccccCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhCccccc
Confidence 44444444557889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C--CcchhhhHHhhhcccccccccchhhhhhccccccccccCCCCCcccccccccCchhhhhcccCcCCCCcccccCCcc
Q 013979 311 P--PKQKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNED 388 (432)
Q Consensus 311 ~--~Kgk~~FmQKYYHkGAFf~D~~d~~~~~~~~e~i~kRDfs~pt~eD~~dk~~LPkvMQvknfGk~GrTKyThL~deD 388 (432)
+ .||||+||||||||||||+|.++ +.|||||||+||++|+|||+|||||||||||||+|||||||||+||
T Consensus 318 nk~~KgkykFLQKYYHkGAFf~de~d--------e~V~KRDfseaT~ed~~dKtILPKvMQVKnFgragrTK~THLvneD 389 (430)
T KOG1425|consen 318 NKAKKGKYKFLQKYYHKGAFFLDEDD--------EIVLKRDFSEATLEDHLDKTILPKVMQVKNFGRAGRTKWTHLVNED 389 (430)
T ss_pred ccccchhHHHHHHHHhccccccCcch--------hhHHhhccccccccccccccccccceeecccccccccceeeecccc
Confidence 5 89999999999999999999762 3499999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhHHhhh-hhhcCCCCCCCCCccccccccc
Q 013979 389 TTDWNNPWTYNDPLRAKYN-AKMAGMNAPIAKPKGSKKLKDW 429 (432)
Q Consensus 389 Tt~~~~~w~~~~~~~~k~~-~k~~g~~~~f~rP~~~k~~~~~ 429 (432)
||.|+|||+++++++.||+ .++||+.++|++|..||++ +|
T Consensus 390 TT~~~s~W~~~~~~n~kf~~~raGg~r~~fd~p~sKKrK-~~ 430 (430)
T KOG1425|consen 390 TTDFDSPWYSESNLNLKFNKKRAGGDRPVFDRPLSKKRK-TW 430 (430)
T ss_pred ccccCCcccCCCchHhHHHHHhccCCccccCCccchhcc-CC
Confidence 9999999999999999997 5888999999999976654 44
No 2
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=100.00 E-value=3.7e-96 Score=719.39 Aligned_cols=261 Identities=59% Similarity=0.880 Sum_probs=233.3
Q ss_pred hhhhhhcccccCCchhhhhcccccccccccCCccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013979 156 EEEEEEESEYETDSEEEQMGIAMLKPVFVPKSERDTIAERERLEAEEQALEELAKRKLEERKVETKKILVEEVRKDEEIQ 235 (432)
Q Consensus 156 ~eeeeeeSe~es~SEeE~~~~~~lKPVFV~K~~R~Ti~e~e~~e~ee~~~e~~~~~~~eeRk~et~~lv~eei~ke~~~~ 235 (432)
++++++||+|+++|+++++..||||||||||++|.|+.+.+..+.++..+++..++.+++|+.+|++||.++|+++++..
T Consensus 14 eeeseesse~Ee~SdSEde~~~~lKPVFV~K~~R~T~~e~e~~~~e~~~~e~e~~~~~eeRk~~s~~lvee~i~ke~~~~ 93 (276)
T PF06991_consen 14 EEESEESSEEEESSDSEDEEEPLLKPVFVPKKQRKTIKEREAEEAEEEELEEEAKRRAEERKKESKKLVEEEIRKELEER 93 (276)
T ss_pred cccccccccccccccccccccccccceeeccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555444444444599999999999999999999998888888888999999999999999999999999876
Q ss_pred HhhhhhhccCCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC--CCc
Q 013979 236 KNLEMEANIADVDTDDEVNEAEEYEAWKVREIARIKRDREAREAMLKEKEEIEKVRNMTEEERREWERRNPKPAP--PPK 313 (432)
Q Consensus 236 ~~~~~e~~~~~vDddDeld~E~EyeaWKlRELkRiKRdRe~re~~ekEk~EieRrrnmteEER~~~~~~~~k~~~--~~K 313 (432)
.+........+|||||++||++||+|||+|||+||||||++++++++|++||+||||||++||+++++.+++... ..|
T Consensus 94 ~~~~~~e~~~~~dDTDd~dpE~EyeaWKlRELkRiKRDRe~~e~~EkEkeEiERrR~mteEEr~~ed~~~~k~~~~~~~k 173 (276)
T PF06991_consen 94 KAEDEDEAELEVDDTDDEDPEAEYEAWKLRELKRIKRDREEREAREKEKEEIERRRNMTEEERRAEDRENPKQIENKKEK 173 (276)
T ss_pred hhccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhhhhccccc
Confidence 553222223347888999999999999999999999999999999999999999999999999999999988765 489
Q ss_pred chhhhHHhhhcccccccccchhhhhhccccccccccCCCCCcccccccccCchhhhhcccCcCCCCcccccCCccCCCCC
Q 013979 314 QKWRFMQKYYHKGAFFQSDAADTAATVRTDEIYHRDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTDWN 393 (432)
Q Consensus 314 gk~~FmQKYYHkGAFf~D~~d~~~~~~~~e~i~kRDfs~pt~eD~~dk~~LPkvMQvknfGk~GrTKyThL~deDTt~~~ 393 (432)
|||+||||||||||||||+. ++||+||||+||++|+|||++|||||||||||++||||||||++||||+|+
T Consensus 174 ~k~~fmQKyyHkGaF~~d~~---------~~i~~RD~~~~t~~d~~dk~~LPk~mqvr~fGk~grtKythL~~eDTt~~~ 244 (276)
T PF06991_consen 174 GKMKFMQKYYHKGAFFQDEE---------DEIYKRDFSAPTGEDKFDKSLLPKVMQVRNFGKSGRTKYTHLVDEDTTRFD 244 (276)
T ss_pred cchhhhhhcccccccccchH---------HHHhhccccccchHhhhhHHhchHHHhhhhhccccCccccccccccccccC
Confidence 99999999999999999975 569999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHhhhhhhcCCCCCCCCCccccc
Q 013979 394 NPWTYNDPLRAKYNAKMAGMNAPIAKPKGSKK 425 (432)
Q Consensus 394 ~~w~~~~~~~~k~~~k~~g~~~~f~rP~~~k~ 425 (432)
++|++.++++.||++++|||+++|+||++||+
T Consensus 245 ~~w~~~~~~~~~~~~~~~g~~~~fd~p~~kk~ 276 (276)
T PF06991_consen 245 SPWSQESAQNAKFKNKAAGMKQVFDRPSKKKK 276 (276)
T ss_pred CcccccchHHHHHHHhcccccccccCccccCC
Confidence 99999999999999999999999999999875
No 3
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=90.46 E-value=2.9 Score=42.30 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=24.2
Q ss_pred cCCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 013979 244 IADVDTDDEVNEAEEYEAWKVREIARIKRDREAREA 279 (432)
Q Consensus 244 ~~~vDddDeld~E~EyeaWKlRELkRiKRdRe~re~ 279 (432)
+++-||.|..-.=...-.=.|.=|+|-+-.+++.+.
T Consensus 105 ~dDTDd~dpE~EyeaWKlRELkRiKRDRe~~e~~Ek 140 (276)
T PF06991_consen 105 VDDTDDEDPEAEYEAWKLRELKRIKRDREEREAREK 140 (276)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666667777777777777777766655443
No 4
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=86.95 E-value=1.1 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013979 260 EAWKVREIARIKRDREAREAMLK 282 (432)
Q Consensus 260 eaWKlRELkRiKRdRe~re~~ek 282 (432)
.+.-+|||.+||++|.+..++..
T Consensus 148 ~~~Ll~ELekIKkER~ee~~~~e 170 (244)
T PF04889_consen 148 TAALLRELEKIKKERAEEKARKE 170 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999987655443
No 5
>KOG1425 consensus Microfibrillar-associated protein MFAP1 [Cytoskeleton]
Probab=69.22 E-value=1.4e+02 Score=31.95 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhh--hhccCCCCCccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013979 205 LEELAKRKLEERKVETKKILVEEVRKDEEIQK-NLEM--EANIADVDTDDEVNEA-EEYEAWKVREIARIKRDREAREAM 280 (432)
Q Consensus 205 ~e~~~~~~~eeRk~et~~lv~eei~ke~~~~~-~~~~--e~~~~~vDddDeld~E-~EyeaWKlRELkRiKRdRe~re~~ 280 (432)
..+.....+..|..+-++.+-.+|.-+.-+++ .... ..+...++|-+. |++ .+-..+.+=-|.-|+|-+..++.+
T Consensus 206 ~k~k~le~eakr~aEerk~~T~q~V~Ee~~k~El~~k~~~~~~a~l~dv~t-dDein~~~eYEaWKlRelkR~KRdRe~r 284 (430)
T KOG1425|consen 206 KKEKNLEKEAKRDAEERKRETLQIVEEEVIKKELEEKKTKNNEALLNDVDT-DDEINEEEEYEAWKLRELKRIKRDREER 284 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHhhcccc-cccCChHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444445556666666666666665554422 2222 234455676666 555 899999999999999998877665
Q ss_pred HH
Q 013979 281 LK 282 (432)
Q Consensus 281 ek 282 (432)
+.
T Consensus 285 ee 286 (430)
T KOG1425|consen 285 EE 286 (430)
T ss_pred HH
Confidence 53
No 6
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.31 E-value=4.2 Score=43.53 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=17.8
Q ss_pred CccCCCcHHHHHHHHHHHHHHH
Q 013979 249 TDDEVNEAEEYEAWKVREIARI 270 (432)
Q Consensus 249 ddDeld~E~EyeaWKlRELkRi 270 (432)
|.|++||.+ |.+|+|+|+.|-
T Consensus 433 d~~El~~d~-~~~WRLlE~~r~ 453 (459)
T KOG2580|consen 433 DQDELNPDE-YAAWRLLEFSRA 453 (459)
T ss_pred cHhhcCcch-hhhHHHHHHHhc
Confidence 458899977 999999999873
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=40.20 E-value=5.6e+02 Score=30.95 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 013979 74 PRLRRLA 80 (432)
Q Consensus 74 pRLrRl~ 80 (432)
+-|..|.
T Consensus 269 ~eL~dLI 275 (1021)
T PTZ00266 269 KELNILI 275 (1021)
T ss_pred HHHHHHH
Confidence 3344443
No 8
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=33.34 E-value=41 Score=31.16 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=35.6
Q ss_pred hhhhhcccCcCCCCcccccCCccCCCCCCCCCCCchhHHhhhhhhcCCCCCCCC
Q 013979 366 KVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTYNDPLRAKYNAKMAGMNAPIAK 419 (432)
Q Consensus 366 kvMQvknfGk~GrTKyThL~deDTt~~~~~w~~~~~~~~k~~~k~~g~~~~f~r 419 (432)
..|++=+||-=|=||=+|+...+.+. .-....-..-.|.|..||++.|+++
T Consensus 128 ~mmk~MGf~gF~TTKgK~v~gn~~~~---v~~~kkr~yRQYMNR~GGFNRpLd~ 178 (180)
T PF08648_consen 128 EMMKMMGFGGFGTTKGKKVPGNNVGG---VRKEKKRKYRQYMNRRGGFNRPLDK 178 (180)
T ss_pred HHHHhhcccccccCCCCccCCCCccc---eeeecccHHHHHHhhccccCCCCcc
Confidence 56776688888889999998775432 1112222334567999999999876
No 9
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=27.48 E-value=19 Score=25.51 Aligned_cols=16 Identities=25% Similarity=-0.010 Sum_probs=11.7
Q ss_pred ccccchhhhhcccccc
Q 013979 6 GVSDTIIAIRDKLRGK 21 (432)
Q Consensus 6 ~tagavpv~nekge~~ 21 (432)
|++--+||-|+||+|+
T Consensus 8 gvgvl~pvy~~kgeik 23 (36)
T PF09151_consen 8 GVGVLEPVYNQKGEIK 23 (36)
T ss_dssp SSSBEEEEE-TTS-EE
T ss_pred CceEEEEeecCCCcEE
Confidence 6777899999999974
No 10
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=27.25 E-value=18 Score=32.54 Aligned_cols=21 Identities=19% Similarity=0.629 Sum_probs=17.6
Q ss_pred CcchhhhHHhhhccccccccc
Q 013979 312 PKQKWRFMQKYYHKGAFFQSD 332 (432)
Q Consensus 312 ~Kgk~~FmQKYYHkGAFf~D~ 332 (432)
+-|-=+|+++|||-|-||-=+
T Consensus 75 ETGDDkF~fr~FHtG~W~SCE 95 (118)
T PF07803_consen 75 ETGDDKFIFRYFHTGIWLSCE 95 (118)
T ss_pred ecCCceeehhhhhcchhhhhh
Confidence 446668999999999999865
No 11
>PF15119 APOC4: Apolipoprotein C4
Probab=26.70 E-value=27 Score=30.07 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=10.1
Q ss_pred CcchhhhHHhhhc
Q 013979 312 PKQKWRFMQKYYH 324 (432)
Q Consensus 312 ~Kgk~~FmQKYYH 324 (432)
+-+=.+|||-||+
T Consensus 49 p~~~qGFmQTYYd 61 (99)
T PF15119_consen 49 PSAFQGFMQTYYD 61 (99)
T ss_pred hHHHHHHHHHHHH
Confidence 4455789999996
No 12
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=26.38 E-value=4.3e+02 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=18.1
Q ss_pred CCcH----HHHHHHHHHHHHHHHHHH
Q 013979 253 VNEA----EEYEAWKVREIARIKRDR 274 (432)
Q Consensus 253 ld~E----~EyeaWKlRELkRiKRdR 274 (432)
--|+ +-|.+|.-|.|-+||-+.
T Consensus 70 rHPErR~KAAy~afeE~~Lp~lK~E~ 95 (122)
T PF06244_consen 70 RHPERRMKAAYKAFEERRLPELKEEN 95 (122)
T ss_pred CCcchhHHHHHHHHHHHHhHHHHhhC
Confidence 3466 789999999999998754
No 13
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=25.35 E-value=87 Score=32.90 Aligned_cols=47 Identities=30% Similarity=0.594 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-CCcchhhhHHhhhcccccccc
Q 013979 279 AMLKEKEEIEKVRNMTEEERREWERRNPKPAP-PPKQKWRFMQKYYHKGAFFQS 331 (432)
Q Consensus 279 ~~ekEk~EieRrrnmteEER~~~~~~~~k~~~-~~Kgk~~FmQKYYHkGAFf~D 331 (432)
..+..++.+.|.-||++++-+..++---+... +-..+|+| -||||=-
T Consensus 41 ~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF------~GaFYFa 88 (350)
T KOG4404|consen 41 RLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKF------AGAFYFA 88 (350)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCcccccccccc------CcceEEE
Confidence 34555667888999999997765443322222 44555665 5999964
No 14
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=25.21 E-value=6.2e+02 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=10.6
Q ss_pred cccccccccCCccchhHHHhH
Q 013979 177 AMLKPVFVPKSERDTIAERER 197 (432)
Q Consensus 177 ~~lKPVFV~K~~R~Ti~e~e~ 197 (432)
.+.+||- ..|.|-+.+..
T Consensus 268 ~~~~~~~---~kkKTk~qRnK 285 (387)
T PF07767_consen 268 SINKPKK---NKKKTKAQRNK 285 (387)
T ss_pred ccccccc---cccccHHHHHH
Confidence 5667766 45566665443
No 15
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=24.65 E-value=37 Score=26.37 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=14.7
Q ss_pred hhHHhhhcccccccccc
Q 013979 317 RFMQKYYHKGAFFQSDA 333 (432)
Q Consensus 317 ~FmQKYYHkGAFf~D~~ 333 (432)
..+++||+.+||..+.+
T Consensus 26 ~~~~~~Y~~~A~l~~~~ 42 (64)
T smart00593 26 ELLSKYYEPWAFLRDPE 42 (64)
T ss_pred HHHHHhCCCCceeeChh
Confidence 47899999999999853
No 16
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=24.40 E-value=6e+02 Score=29.54 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=12.3
Q ss_pred cchhhhHHhhhcccccccc
Q 013979 313 KQKWRFMQKYYHKGAFFQS 331 (432)
Q Consensus 313 Kgk~~FmQKYYHkGAFf~D 331 (432)
+.-.+-+||.-.+--|.|.
T Consensus 1212 ~~~~Ka~qKnas~~~~~qE 1230 (1329)
T KOG4156|consen 1212 KVTAKALQKNASRPMVIQE 1230 (1329)
T ss_pred hHHHHHHhccCccchhhhh
Confidence 3345667777777667665
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.32 E-value=7.6e+02 Score=29.32 Aligned_cols=41 Identities=29% Similarity=0.343 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCHH
Q 013979 256 AEEYEAWKVREIARIKRD--REAREAMLKEKEEIEKVRNMTEE 296 (432)
Q Consensus 256 E~EyeaWKlRELkRiKRd--Re~re~~ekEk~EieRrrnmteE 296 (432)
|-|-.+=|.|||.|-+-+ +-+++.+|.-+.|+||-|.+-=|
T Consensus 372 ElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewE 414 (1118)
T KOG1029|consen 372 ELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWE 414 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888765432 23445666677777777766433
Done!