Query 013979
Match_columns 432
No_of_seqs 160 out of 218
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 03:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zfoa_ g.39.1.4 (A:) LASP-1 { 66.4 0.36 2.6E-05 30.7 -1.0 16 313-328 15-30 (30)
2 d1pvma3 g.41.13.1 (A:143-178) 27.8 5.6 0.00041 25.5 -0.1 16 6-21 8-23 (36)
3 d2hfva1 d.58.5.5 (A:23-97) Hyp 16.3 18 0.0013 27.1 0.5 14 1-14 34-47 (75)
4 d2hlya1 d.3.1.19 (A:5-206) Hyp 11.2 32 0.0023 29.9 0.8 40 349-390 95-144 (202)
5 d1dp7p_ a.4.5.20 (P:) Class II 9.7 25 0.0018 26.0 -0.4 22 360-382 47-68 (76)
6 d3c7bb2 d.58.36.2 (B:4-122) Di 8.7 44 0.0032 26.8 0.7 21 349-375 6-26 (119)
7 d2cqea1 g.66.1.1 (A:458-513) Z 8.7 30 0.0022 24.5 -0.3 11 321-331 4-15 (56)
8 d2v4jb2 d.58.36.2 (B:2-135) Di 7.9 50 0.0037 26.9 0.7 13 362-375 27-39 (134)
9 d2cxfa1 a.256.1.1 (A:83-249) R 7.4 59 0.0043 26.4 0.9 15 318-332 125-139 (167)
10 d1slma1 a.20.1.2 (A:16-80) Str 6.1 73 0.0053 22.5 0.7 8 317-324 4-11 (65)
No 1
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=66.41 E-value=0.36 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=13.1
Q ss_pred cchhhhHHhhhccccc
Q 013979 313 KQKWRFMQKYYHKGAF 328 (432)
Q Consensus 313 Kgk~~FmQKYYHkGAF 328 (432)
--|.+-|-||||||.|
T Consensus 15 ~Ekl~ClDk~WHK~CF 30 (30)
T d1zfoa_ 15 TEKVNCLDKFWHKACF 30 (30)
T ss_dssp GGCCCSSSSCCCGGGC
T ss_pred HHHhhhhHHHHhhccC
Confidence 3466778999999998
No 2
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=27.84 E-value=5.6 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.027 Sum_probs=13.6
Q ss_pred ccccchhhhhcccccc
Q 013979 6 GVSDTIIAIRDKLRGK 21 (432)
Q Consensus 6 ~tagavpv~nekge~~ 21 (432)
|++--+||-|+||+|+
T Consensus 8 gvgvl~pvy~~kgeik 23 (36)
T d1pvma3 8 GVGVLEPVYNEKGEIK 23 (36)
T ss_dssp SSSBEEEEECTTSCEE
T ss_pred CceEEEEeecCCCcEE
Confidence 6777899999999974
No 3
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=16.31 E-value=18 Score=27.14 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=12.0
Q ss_pred CCcccccccchhhh
Q 013979 1 MSVTAGVSDTIIAI 14 (432)
Q Consensus 1 Ms~~~~tagavpv~ 14 (432)
||+.-|..|+||.|
T Consensus 34 mSilEGsig~iPRR 47 (75)
T d2hfva1 34 MSILEGSLGVIPRR 47 (75)
T ss_dssp CCSSSCCSSSSCEE
T ss_pred chhhcccccceeEE
Confidence 89888999999954
No 4
>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.20 E-value=32 Score=29.93 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=28.8
Q ss_pred cCCCCCcccccccccCc-hhhhhcc---------cCcCCCCcccccCCccCC
Q 013979 349 DFSAPTGEDKMDKTILP-KVMQVKH---------FGRSGRTKWTHLVNEDTT 390 (432)
Q Consensus 349 Dfs~pt~eD~~dk~~LP-kvMQvkn---------fGk~GrTKyThL~deDTt 390 (432)
||++|-+-.--+--.+| |.||.|- +|.+|--- |-.+.|-|
T Consensus 95 DFMaP~Fse~~~a~~iP~KmfQRrld~ma~s~ddL~~~GDF~--~~p~~d~T 144 (202)
T d2hlya1 95 DFMAPAFSEGTDALAVPAKMFQRPLSAMAASINDLGQSGDFF--YRSEPEAT 144 (202)
T ss_dssp ETTGGGTTTTCGGGCCCCCBEEEEGGGCCSSTTCCCSTTCEE--EEECHHHH
T ss_pred EecccccccCCCCCcCcHHHHhhhhhhhccCHHHhcCCCCee--ecCChHHH
Confidence 89999875555556889 9999983 78888653 33556655
No 5
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.66 E-value=25 Score=26.02 Aligned_cols=22 Identities=14% Similarity=0.504 Sum_probs=16.1
Q ss_pred ccccCchhhhhcccCcCCCCccc
Q 013979 360 DKTILPKVMQVKHFGRSGRTKWT 382 (432)
Q Consensus 360 dk~~LPkvMQvknfGk~GrTKyT 382 (432)
=+++.|. ++.|.+|-.|++||-
T Consensus 47 iR~vFP~-~~~RRLg~rG~skYh 68 (76)
T d1dp7p_ 47 IRSVFMG-LRTRRLGTRGNSKYH 68 (76)
T ss_dssp HHHHSTT-CEEEEESSTTCCEEE
T ss_pred HHHHCCC-ceeeecCCCCCceEE
Confidence 4555565 456779999999984
No 6
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.68 E-value=44 Score=26.78 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=14.7
Q ss_pred cCCCCCcccccccccCchhhhhcccCc
Q 013979 349 DFSAPTGEDKMDKTILPKVMQVKHFGR 375 (432)
Q Consensus 349 Dfs~pt~eD~~dk~~LPkvMQvknfGk 375 (432)
|+--|.+. ..||.|++ ||||+
T Consensus 6 digpp~y~-----~~~ppvi~-~nyGk 26 (119)
T d3c7bb2 6 DFGPPYFR-----DLLHPVIA-KNYGK 26 (119)
T ss_dssp SCCSCCGG-----GGSCHHHH-HHTTC
T ss_pred CCCCCChH-----HhCCHHHH-hcCCC
Confidence 55444443 46999998 89986
No 7
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.67 E-value=30 Score=24.46 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=7.8
Q ss_pred hhhcccc-cccc
Q 013979 321 KYYHKGA-FFQS 331 (432)
Q Consensus 321 KYYHkGA-Ff~D 331 (432)
||||.|+ =|+.
T Consensus 4 K~yHtg~kCy~g 15 (56)
T d2cqea1 4 KLYHTTGNCING 15 (56)
T ss_dssp SHHHHTSCCSSC
T ss_pred ceeecCCcccCC
Confidence 8999884 4554
No 8
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.93 E-value=50 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=11.1
Q ss_pred ccCchhhhhcccCc
Q 013979 362 TILPKVMQVKHFGR 375 (432)
Q Consensus 362 ~~LPkvMQvknfGk 375 (432)
..||.|++ ||||+
T Consensus 27 ~~lppvi~-~nyGk 39 (134)
T d2v4jb2 27 EFFPPVIA-KNFGS 39 (134)
T ss_dssp TTCCHHHH-HHTTC
T ss_pred HhCCHHHH-hcCCC
Confidence 46899998 89996
No 9
>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.43 E-value=59 Score=26.41 Aligned_cols=15 Identities=13% Similarity=0.580 Sum_probs=13.2
Q ss_pred hHHhhhccccccccc
Q 013979 318 FMQKYYHKGAFFQSD 332 (432)
Q Consensus 318 FmQKYYHkGAFf~D~ 332 (432)
.+.+||+..||..|.
T Consensus 125 ~l~~~Y~~~A~l~~~ 139 (167)
T d2cxfa1 125 LLSEFYEVNALMMEE 139 (167)
T ss_dssp THHHHBCSSCSTTSH
T ss_pred HHHHhcCCcccccCc
Confidence 578999999999985
No 10
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=6.10 E-value=73 Score=22.52 Aligned_cols=8 Identities=25% Similarity=1.211 Sum_probs=6.5
Q ss_pred hhHHhhhc
Q 013979 317 RFMQKYYH 324 (432)
Q Consensus 317 ~FmQKYYH 324 (432)
+|||+||+
T Consensus 4 ~YL~~fgy 11 (65)
T d1slma1 4 KYLENYYD 11 (65)
T ss_dssp HHHHHHSC
T ss_pred HHHHHcCC
Confidence 68999974
Done!