BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013981
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 36.2 bits (82), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 236 ENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIG 295
           EN+  ++IT+V S   +   A+F I+ S VGK+ A +  IP  +   +   ++ +I A G
Sbjct: 290 ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASG 349

Query: 296 L-----SNLQYTQSASFRNIMIVGASLFLGLS 322
           +     S + Y ++   +N+++    L +G+S
Sbjct: 350 IRVLIESKVDYNKA---QNLILTSVILIIGVS 378


>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
           Protein Synthase Iii
 pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
 pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
          Length = 313

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 272 LASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMIVGAS 316
           +AS+ Q  A S   FM+++I A      QY QS  + NI++VGA 
Sbjct: 103 VASMDQLAACS--GFMYSMITA-----KQYVQSGDYHNILVVGAD 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.140    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,322,241
Number of Sequences: 62578
Number of extensions: 413614
Number of successful extensions: 718
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 3
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)