Query 013981
Match_columns 432
No_of_seqs 199 out of 1717
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 00:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 2.6E-80 5.7E-85 628.0 26.3 392 1-429 114-510 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 8.1E-61 1.8E-65 491.3 25.2 322 1-391 105-438 (451)
3 PRK11412 putative uracil/xanth 100.0 5.8E-58 1.3E-62 474.5 29.7 319 4-390 103-431 (433)
4 PRK10720 uracil transporter; P 100.0 5.8E-51 1.3E-55 423.5 29.8 320 1-395 86-414 (428)
5 TIGR03616 RutG pyrimidine util 100.0 2.2E-50 4.8E-55 419.1 30.0 314 2-389 110-428 (429)
6 TIGR03173 pbuX xanthine permea 100.0 2.1E-49 4.7E-54 409.7 28.8 316 1-387 82-406 (406)
7 TIGR00801 ncs2 uracil-xanthine 100.0 5.5E-49 1.2E-53 407.6 28.8 312 2-385 91-415 (415)
8 PF00860 Xan_ur_permease: Perm 100.0 6.3E-48 1.4E-52 396.7 19.7 289 1-325 89-385 (389)
9 COG2252 Xanthine/uracil/vitami 99.8 1.2E-18 2.5E-23 179.0 21.3 260 2-305 102-375 (436)
10 COG0659 SUL1 Sulfate permease 99.7 1.7E-16 3.6E-21 170.0 23.3 250 2-299 98-371 (554)
11 TIGR00815 sulP high affinity s 99.7 4.8E-15 1.1E-19 159.8 24.9 252 4-300 99-383 (563)
12 PRK11660 putative transporter; 99.6 5.3E-14 1.1E-18 151.9 23.9 263 4-298 105-401 (568)
13 TIGR00843 benE benzoate transp 99.6 5.9E-14 1.3E-18 143.8 22.3 237 2-299 104-353 (395)
14 PF03594 BenE: Benzoate membra 99.5 5.8E-13 1.3E-17 134.7 21.1 237 1-299 87-337 (378)
15 PF00916 Sulfate_transp: Sulfa 99.5 1.8E-13 4E-18 134.4 11.1 123 173-302 150-273 (280)
16 COG3135 BenE Uncharacterized p 99.4 3.5E-11 7.7E-16 119.9 22.7 237 2-299 103-352 (402)
17 KOG0236 Sulfate/bicarbonate/ox 99.2 1.2E-09 2.7E-14 119.8 20.7 256 3-301 167-453 (665)
18 TIGR00834 ae anion exchange pr 96.7 0.26 5.6E-06 56.2 21.8 123 171-301 656-798 (900)
19 PF11840 DUF3360: Protein of u 96.4 0.32 6.9E-06 50.0 18.0 253 9-301 149-415 (492)
20 KOG1172 Na+-independent Cl/HCO 95.9 1.1 2.4E-05 50.6 20.7 90 208-301 668-774 (876)
21 COG0659 SUL1 Sulfate permease 88.4 6.1 0.00013 43.2 12.6 116 173-300 25-151 (554)
22 TIGR00815 sulP high affinity s 83.0 15 0.00032 40.2 12.3 116 173-300 18-150 (563)
23 PRK11660 putative transporter; 77.9 26 0.00056 38.4 12.1 115 173-299 33-155 (568)
24 PF00955 HCO3_cotransp: HCO3- 68.4 1.7 3.7E-05 46.9 0.1 88 209-300 374-478 (510)
25 PF03594 BenE: Benzoate membra 54.6 61 0.0013 33.8 8.4 113 168-284 3-126 (378)
26 TIGR00843 benE benzoate transp 53.7 82 0.0018 33.1 9.3 109 171-284 22-142 (395)
27 PF00860 Xan_ur_permease: Perm 37.2 1E+02 0.0022 31.9 7.1 97 206-302 37-146 (389)
28 KOG4085 Uncharacterized conser 26.9 1.4E+02 0.003 27.0 5.1 44 245-292 29-72 (175)
29 TIGR00834 ae anion exchange pr 25.4 8.4E+02 0.018 28.6 12.3 123 167-294 366-504 (900)
30 TIGR00822 EII-Sor PTS system, 22.0 5.2E+02 0.011 25.6 8.7 36 265-301 163-198 (265)
31 PRK10711 hypothetical protein; 21.9 2.2E+02 0.0047 27.8 5.9 26 24-49 23-49 (231)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-80 Score=628.01 Aligned_cols=392 Identities=46% Similarity=0.830 Sum_probs=370.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccccchHHHHHHHHHHHHH--HHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALY--LRG 78 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~~i~~~~~~l~~~~~l~--l~~ 78 (432)
||++|||+++++++++++|++|+++++.|++.|+.+.+++.++|+++...+.+..+.||+++++.+.+.+++++| +..
T Consensus 114 mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~ 193 (510)
T KOG1292|consen 114 MREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKLGKHWEISLPEILLLILFSQYASLPK 193 (510)
T ss_pred HHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhhhhheeecHHHHHHHHHHHHhhhccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999988898888 321
Q ss_pred HHh--hhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccccc
Q 013981 79 ISV--FGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVR 156 (432)
Q Consensus 79 ~~~--~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~ 156 (432)
... ..+++++++++++++.+.|++|.+++.+|.++.+ +.+||++||+|-+...+++||+.
T Consensus 194 ~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~------------------~~~t~~~~RTD~~~vi~~apWi~ 255 (510)
T KOG1292|consen 194 KGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYK------------------PTTTQSSCRTDRNGVISSAPWIR 255 (510)
T ss_pred ccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCC------------------ccccCCcccccHhhhhccCCcee
Confidence 111 2256899999999999999999999988777643 24678999999987778999999
Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccc
Q 013981 157 IPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTE 236 (432)
Q Consensus 157 ~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~ 236 (432)
+|+|+|||.|+||++....|+...+++++|++|+|.|++|.+++++++++.+|||+..||++++++|+||+|.++|+|+|
T Consensus 256 vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~E 335 (510)
T KOG1292|consen 256 VPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVE 335 (510)
T ss_pred ecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeecc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred cchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCccceeEEeeh
Q 013981 237 NVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMIVGAS 316 (432)
Q Consensus 237 n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn~~Ivg~s 316 (432)
|+|++++||+.||++++++|+|||++|++.||+|++++||+|++||+++++|+++...|++++|++|+++.||++|+|+|
T Consensus 336 Nigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~IlG~S 415 (510)
T KOG1292|consen 336 NIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFILGFS 415 (510)
T ss_pred ceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCC-Ccccccc
Q 013981 317 LFLGLSIPAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPG-SRQERGV 395 (432)
Q Consensus 317 l~~Glg~p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~-~~~~rg~ 395 (432)
+++|+.+|+||++++ +|++||.+++||+++.++++.++||+++|++|||++|+ +|||||+
T Consensus 416 if~gLsip~yF~~~~-------------------~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~gatr~~RG~ 476 (510)
T KOG1292|consen 416 IFLGLSIPQYFEQYP-------------------GPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGATREQRGL 476 (510)
T ss_pred HHHhccHHHHHHhCC-------------------CccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCCChHhcCC
Confidence 999999999999963 47899999999999999999999999999999999999 5899999
Q ss_pred hhhhccccCCCCCCCCccccCCccCccccccccc
Q 013981 396 YIWSRAEDLASDPSLQADYSLPRKVCRCFCCARR 429 (432)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~ 429 (432)
++|++.++.+.|.+++++|+||+++||+|++++|
T Consensus 477 ~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~~~ 510 (510)
T KOG1292|consen 477 RWWDKFETFNGDVRNEEFYSLPFNLNRFFPRIPW 510 (510)
T ss_pred cchhccccccCCccccccccCcHHHHhhcccCCC
Confidence 9999999999999999999999999999999886
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.1e-61 Score=491.27 Aligned_cols=322 Identities=27% Similarity=0.501 Sum_probs=280.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHH-HHHHhcCchhHHHHHHHHHhhhhhhhcCCCCc------cccch-HHHHHHHHHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTGLMS-LFLRLINPVVVAPTVAAIGLAFFSYGFPQAGS------CVEIS-IPQILLVLIF 72 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~gl~~-~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~------~~~i~-~~~~~l~~~~ 72 (432)
++.++|+++++|+++++++. +.+ |++|+|||+|+|+++++||++|.++++++++. ..+.. ...+.+...+
T Consensus 105 ~~~~~G~ii~ag~~~~li~~--~~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~t 182 (451)
T COG2233 105 IAALLGGIIAAGLVYFLISP--IVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSLENLGLALVT 182 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHH
Confidence 46789999999999999997 567 99999999999999999999999998876421 11111 1112222222
Q ss_pred HHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcc
Q 013981 73 ALYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTA 152 (432)
Q Consensus 73 ~l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~a 152 (432)
.+....+++++|+++|++++|+|+++||++++.+ |+ +|++ .+.++
T Consensus 183 l~~il~~~~f~~g~~~~i~ILiGlv~G~~la~~~---G~-------------------------------vdf~-~v~~a 227 (451)
T COG2233 183 LLIILLINRFGKGFLRRIPILIGLVVGYLLALFM---GM-------------------------------VDFS-GVAEA 227 (451)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---CC-------------------------------cCcc-ccccC
Confidence 2333446889999999999999999999999999 54 4555 47889
Q ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCC
Q 013981 153 AWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSS 232 (432)
Q Consensus 153 pw~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t 232 (432)
|||++|+|++||. +|||.++++++++++++++|++||+.|+++.++++...+++++|++++||++++++|+||+ +|+|
T Consensus 228 ~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~-~p~T 305 (451)
T COG2233 228 PWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGG-FPNT 305 (451)
T ss_pred ceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCC-CCCC
Confidence 9999999999999 9999999999999999999999999999999986544447799999999999999999997 9999
Q ss_pred cccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCcc-cee
Q 013981 233 TLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFR-NIM 311 (432)
Q Consensus 233 ~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~R-n~~ 311 (432)
+|+||+|++++||++||+++.+++++++++|++||+++++++||.||+||+.+++||+++.+|+|++.++|.+++| |.+
T Consensus 306 tfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~Ia~sGir~l~~~~~~~~~~Nl~ 385 (451)
T COG2233 306 TFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMIAASGIRILIRNKVDRSRRNLL 385 (451)
T ss_pred chhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHhcccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988756 999
Q ss_pred EEeehhhhhcch---hHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCC
Q 013981 312 IVGASLFLGLSI---PAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPG 388 (432)
Q Consensus 312 Ivg~sl~~Glg~---p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~ 388 (432)
|+++++.+|++. |+++++ +|+++ +.+++||+.+|+++|++||+++|+
T Consensus 386 IvAvsl~~Gig~~~~p~~~~~--------~p~~~----------------------~~l~~sGia~g~i~AIvLNlll~~ 435 (451)
T COG2233 386 IVAVSLGLGIGVGAVPEVFLQ--------LPAWL----------------------RPLLSSGIALGTLTAIVLNLLLPG 435 (451)
T ss_pred eehHHHHhCcchhcCchhhhh--------CcHHH----------------------HHHHhccHHHHHHHHHHHHHhccc
Confidence 999999999995 444444 56664 569999999999999999999997
Q ss_pred Ccc
Q 013981 389 SRQ 391 (432)
Q Consensus 389 ~~~ 391 (432)
.++
T Consensus 436 ~~~ 438 (451)
T COG2233 436 EKR 438 (451)
T ss_pred ccc
Confidence 554
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=5.8e-58 Score=474.46 Aligned_cols=319 Identities=18% Similarity=0.282 Sum_probs=269.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCC-Cc-------cccchHHHHHHHHHHHHH
Q 013981 4 LQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQA-GS-------CVEISIPQILLVLIFALY 75 (432)
Q Consensus 4 ~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~-g~-------~~~i~~~~~~l~~~~~l~ 75 (432)
.+|+++++|++++++|++++++|++|+|||+|+|+++++||++|.+.++++. |. ..+.....+.+.+.+...
T Consensus 103 l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~~~~~~~~~~~~~~a~~~l~~ 182 (433)
T PRK11412 103 LAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIADPNGKIQLPPFGLSVAVMCL 182 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCcccccccchHHHHHHHHHHHH
Confidence 4557999999999999999999999999999999999999999999887742 21 111111222223333333
Q ss_pred HHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhccccc
Q 013981 76 LRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWV 155 (432)
Q Consensus 76 l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~ 155 (432)
+..+++++|+++|++++++|+++||+++.+.. |. |++ .+.+++|.
T Consensus 183 il~~~~~~~g~~~~~svLiGiv~G~v~a~~~~--g~--------------------------------d~~-~v~~a~w~ 227 (433)
T PRK11412 183 VLAMIIFLPQRIARYSLLVGTIVGWILWAFCF--PS--------------------------------SHS-LSGELHWQ 227 (433)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh--CC--------------------------------Ccc-hhccCCce
Confidence 34567899999999999999999999865431 32 333 45678884
Q ss_pred cccccccccccc-ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcc
Q 013981 156 RIPYPLQWGIPI-FHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTL 234 (432)
Q Consensus 156 ~~P~p~~~g~P~-f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~ 234 (432)
+++||.|. ||+.+++++++++++.++|++||+.|+++.++++.+++++++|++.+||++|+++|+||+ +|+|+|
T Consensus 228 ----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~-~p~tt~ 302 (433)
T PRK11412 228 ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAV-IPFSPF 302 (433)
T ss_pred ----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCC-CCCCch
Confidence 44589995 999999999999999999999999999999876544467899999999999999999997 999999
Q ss_pred cccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCccceeEEe
Q 013981 235 TENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMIVG 314 (432)
Q Consensus 235 s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn~~Ivg 314 (432)
+||+|++++||++||+++.++|++++++||+||+++++++||.||+||+++++|++++.+|+|+++++|++ +||.+|+|
T Consensus 303 sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~~-~rn~~ivg 381 (433)
T PRK11412 303 VSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITFT-ARNIYRLA 381 (433)
T ss_pred hhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988865 99999999
Q ss_pred ehhhhhcchhHHhhhcCc-ccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCCCc
Q 013981 315 ASLFLGLSIPAYFQQYHP-ETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPGSR 390 (432)
Q Consensus 315 ~sl~~Glg~p~~~~~~~p-~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~~~ 390 (432)
+++.+|++.. +.| +..+++|++ ++.+++||+++|+++|++||+++|+||
T Consensus 382 ~sl~~Glg~~-----~~p~~~~~~~P~~----------------------~~~~l~sgi~~g~l~AilLn~~~~~~~ 431 (433)
T PRK11412 382 LPLFVGIFLM-----ALPPVYLQDLPLT----------------------LRPLLSNGLLVGILLAVLMENLIPWER 431 (433)
T ss_pred HHHHHHhhHH-----hCCHHHHHHChHH----------------------HHHHHcCcHHHHHHHHHHHHhhcCccc
Confidence 9999999973 122 233445665 577999999999999999999999755
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=5.8e-51 Score=423.51 Aligned_cols=320 Identities=21% Similarity=0.297 Sum_probs=269.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhh--h-HHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCcc----ccchHHHHHHHHHHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTG--L-MSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSC----VEISIPQILLVLIFA 73 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~g--l-~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~----~~i~~~~~~l~~~~~ 73 (432)
+|+++|+++++|+++++++++. + ++|++|+|||.|+|+++++||+++.+.++++.|.. ...+...+.+.++..
T Consensus 86 ~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l 165 (428)
T PRK10720 86 YEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISMVTL 165 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhccccCCCCcccchHHHHHHHHHH
Confidence 3789999999999999999862 1 67899999999999999999999999887654421 111122222222222
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhccc
Q 013981 74 LYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAA 153 (432)
Q Consensus 74 l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~ap 153 (432)
+.+..++++.|+++|++++++|+++||++++.+ |.. |++ .+.+++
T Consensus 166 ~iil~~~~~~kg~~~~~~iLigIvvG~ila~~l---G~~-------------------------------d~~-~v~~a~ 210 (428)
T PRK10720 166 AVTVLGSVLFRGFLAIIPILIGVLVGYALSFAM---GMV-------------------------------DTT-PIIEAH 210 (428)
T ss_pred HHHHHHHHHhccHHHHhHHHHHHHHHHHHHHHh---cCC-------------------------------CHH-HhhcCc
Confidence 222235667899999999999999999999988 432 333 456789
Q ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCc
Q 013981 154 WVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSST 233 (432)
Q Consensus 154 w~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~ 233 (432)
|+++|. |+.|+||+..++.+++.+++.++|++|++.++++..+++..++++.||++.+||++|+++|+||+ +|+|+
T Consensus 211 ~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~-~p~tt 286 (428)
T PRK10720 211 WFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGS-TPNTT 286 (428)
T ss_pred cccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCC-CCccc
Confidence 999994 67799999999999999999999999999999998875433356789999999999999999997 99999
Q ss_pred ccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhh--hhccCCCcccee
Q 013981 234 LTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNL--QYTQSASFRNIM 311 (432)
Q Consensus 234 ~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l--~~~~~~~~Rn~~ 311 (432)
|+||+|+++.||++||+++.++++++++++++||+++++++||.||+||+.+++|+++..+|+|++ .+.|++++||.+
T Consensus 287 y~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~l~~~~~~~~~~~n~~ 366 (428)
T PRK10720 287 YGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLI 366 (428)
T ss_pred cccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 566777888999
Q ss_pred EEeehhhhhcchhHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCCCcc
Q 013981 312 IVGASLFLGLSIPAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPGSRQ 391 (432)
Q Consensus 312 Ivg~sl~~Glg~p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~~~~ 391 (432)
|+|+++.+|++.... . ++.++.+|+..|+++|++||+++|.+|+
T Consensus 367 i~~~~l~~g~~~~~~--~----------------------------------~~~~~~~gi~~g~~~ai~Lnlll~~~~~ 410 (428)
T PRK10720 367 LTSVILIIGVSGAKV--N----------------------------------IGAAELKGMALATIVGIGLSLIFKLISK 410 (428)
T ss_pred HHHHHHHHHHHHHHH--H----------------------------------HHHHhcCcHHHHHHHHHHHHHHhccccc
Confidence 999999999985421 0 3558889999999999999999998777
Q ss_pred cccc
Q 013981 392 ERGV 395 (432)
Q Consensus 392 ~rg~ 395 (432)
+|+.
T Consensus 411 ~~~~ 414 (428)
T PRK10720 411 LRPE 414 (428)
T ss_pred ccCC
Confidence 7665
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=2.2e-50 Score=419.15 Aligned_cols=314 Identities=23% Similarity=0.381 Sum_probs=264.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhH---HHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccccchHHHHHHHHHHHHHHHH
Q 013981 2 RELQGAIIVGSIFQSILGFTGLM---SLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALYLRG 78 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~gl~---~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~~i~~~~~~l~~~~~l~l~~ 78 (432)
++++|+++++|++++++++++.. ++++|+|||+|+|+++++||+++++.++++.+.. ++..+...+.++. +..
T Consensus 110 ~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-~~~~~~al~tl~~---i~l 185 (429)
T TIGR03616 110 ALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-GFDSWMAVLTILC---IGA 185 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHH---HHH
Confidence 67899999999999999997644 8999999999999999999999999988764321 1111111111111 112
Q ss_pred HHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccccccc
Q 013981 79 ISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIP 158 (432)
Q Consensus 79 ~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~~P 158 (432)
+++++|+++|++++++|+++||++|+.++. .++. .++.|++ ++.++||+++|
T Consensus 186 ~~l~~~~~l~~~avLiGivvG~iva~~l~~--~~g~-------------------------~~~vd~s-~v~~a~~~~lP 237 (429)
T TIGR03616 186 VAVFTRGMLQRLLILVGLIAAYLAYFILTN--VFGL-------------------------GKAVDFS-PISQAAWFGLP 237 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCC-------------------------CccccCc-ccccCccccCC
Confidence 356889999999999999999999987631 1110 0125665 56789999999
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccc
Q 013981 159 YPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENV 238 (432)
Q Consensus 159 ~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~ 238 (432)
+|+.|+||++.++++++.++++++|++||+.++++..+++ .++ +++|++.+||++|+++|++|+ .|+|+|+||+
T Consensus 238 ---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~-~~~-~i~r~l~adGl~t~~agl~g~-~p~tt~~en~ 311 (429)
T TIGR03616 238 ---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRN-LDP-YMGRAFVGDGLATMLSGSVGG-TGVTTYAENI 311 (429)
T ss_pred ---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-CCc-hhccchhhhhHHHHHHHhcCC-CCCcceeeee
Confidence 5788999999999999999999999999999999988743 343 589999999999999999997 9999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhh--hhccCCCccceeEEeeh
Q 013981 239 HTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNL--QYTQSASFRNIMIVGAS 316 (432)
Q Consensus 239 G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l--~~~~~~~~Rn~~Ivg~s 316 (432)
|+++.||++||+++..+++++++++++||+++++++||.||+||+++++|+++..+|+|++ ++.|++++||.+|+|++
T Consensus 312 g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l~~~~~d~~~~rn~~ivg~s 391 (429)
T TIGR03616 312 GVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIWVQNKVDLTQNGNLIMVAVT 391 (429)
T ss_pred eeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCccceeehhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 45577668899999999
Q ss_pred hhhhcchhHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCCCC
Q 013981 317 LFLGLSIPAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVPGS 389 (432)
Q Consensus 317 l~~Glg~p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p~~ 389 (432)
+.+|++.... .++.+++||+.+|+++|++||+++|+|
T Consensus 392 l~~g~g~~~~------------------------------------~~~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 392 LVLGAGDFAL------------------------------------TIGAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred HHHHhHHHHH------------------------------------HHHHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 9999986411 146688999999999999999999954
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=2.1e-49 Score=409.66 Aligned_cols=316 Identities=28% Similarity=0.466 Sum_probs=269.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCc------cccchHHHHHHHHHHHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGS------CVEISIPQILLVLIFAL 74 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~------~~~i~~~~~~l~~~~~l 74 (432)
+|+++|+++++|+++++++. +++|++|+|||.|+|.++++||+++.+.++++... ..+.....+.+..++
T Consensus 82 ~~~~~ga~~v~Gii~illg~--~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~~~~~~~l~l~~l~-- 157 (406)
T TIGR03173 82 LGAIFGAVIVAGLFVILLAP--FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFGSPQNLGLALLTLV-- 157 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHHHHHH--
Confidence 37899999999999999994 68999999999999999999999999887765321 111111111111111
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccc
Q 013981 75 YLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAW 154 (432)
Q Consensus 75 ~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw 154 (432)
.+..++++.|+++|++++++++++||++++.+ |.. |++ .+.++||
T Consensus 158 ~~il~~~~~~~~~~~~aiLi~ivvg~iva~~~---g~~-------------------------------~~~-~i~~~~~ 202 (406)
T TIGR03173 158 IILLLNRFGKGFLRSIAVLLGLVVGTIVAAAL---GMV-------------------------------DFS-GVAEAPW 202 (406)
T ss_pred HHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHh---cCC-------------------------------Cch-hhccCCe
Confidence 12234667788999999999999999999988 432 222 3456789
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcc
Q 013981 155 VRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTL 234 (432)
Q Consensus 155 ~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~ 234 (432)
+++|.|++|+.|+||+..+.+++.+++++++|++|++.++++..++ +.+++++||++.+||++|+++|+||+ +|+|+|
T Consensus 203 ~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~-~~~~~~~~~~l~~~Gi~~i~aglfG~-~p~t~~ 280 (406)
T TIGR03173 203 FALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGR-PITEKDLAGGLRADGLGSALGGLFNT-FPYTSF 280 (406)
T ss_pred eeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCchhccchHHhccHHHHHHHHhCC-CCCcch
Confidence 9999988899999999999999999999999999999999998764 44567799999999999999999996 999999
Q ss_pred cccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCccceeEEe
Q 013981 235 TENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMIVG 314 (432)
Q Consensus 235 s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn~~Ivg 314 (432)
+||+|+++.||++||++.+++++++++++++||++++++.||.||+||+++++|+++..+|+|.+++.|.+++||.+|+|
T Consensus 281 ~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i~g 360 (406)
T TIGR03173 281 SQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLIVA 360 (406)
T ss_pred hhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887777999999
Q ss_pred ehhhhhcch---hHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhcCC
Q 013981 315 ASLFLGLSI---PAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNTVP 387 (432)
Q Consensus 315 ~sl~~Glg~---p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~~p 387 (432)
+++.+|++. |+++++ +|++ ++.+++||+.+|+++|++||+++|
T Consensus 361 ~~~~~g~~~~~~p~~~~~--------~p~~----------------------~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 361 VSLGLGLGPTVVPEFFSQ--------LPAW----------------------AQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred HHHHHHHHHHhhHHHHHH--------ChHH----------------------HHHHHhCcHHHHHHHHHHHHhhcC
Confidence 999999985 555554 3554 577999999999999999999987
No 7
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=5.5e-49 Score=407.65 Aligned_cols=312 Identities=26% Similarity=0.475 Sum_probs=265.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh--h-hHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCc------cccch-HHHHHHHHH
Q 013981 2 RELQGAIIVGSIFQSILGFT--G-LMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGS------CVEIS-IPQILLVLI 71 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~--g-l~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~------~~~i~-~~~~~l~~~ 71 (432)
|+++|+++++|+++++++++ + .++|++|+|||.|+|+++++||+++.+.++++.+. ..++. ...+.+.+.
T Consensus 91 ~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~~~~~~~~vg~~ 170 (415)
T TIGR00801 91 PAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSATYGSLENLGVAFV 170 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccccCchhhHHHHHH
Confidence 68899999999999999974 3 35788999999999999999999999988876431 11111 111222222
Q ss_pred HHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhc
Q 013981 72 FALYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRT 151 (432)
Q Consensus 72 ~~l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~ 151 (432)
..+.+..++++.|+++|++++++++++||++++.+ |.. |++ .+.+
T Consensus 171 ~l~~~vl~~~~~~g~~~~~aiLigiv~g~i~a~~l---g~~-------------------------------~~~-~v~~ 215 (415)
T TIGR00801 171 VLALIILLNRFGKGFLKSISILIGILVGYILALFM---GIV-------------------------------DFS-PVID 215 (415)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc---CCc-------------------------------cch-hhcc
Confidence 22223346778899999999999999999999988 443 332 3466
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCC
Q 013981 152 AAWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGS 231 (432)
Q Consensus 152 apw~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~ 231 (432)
+||+++|.+++|| |+||+..+.+++++++++++|++|++.++++.++++..+++++||++.+||++|+++|+||+ +|+
T Consensus 216 ~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~-~p~ 293 (415)
T TIGR00801 216 APWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGG-FPN 293 (415)
T ss_pred CcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCC-CCC
Confidence 8999999988888 79999999999999999999999999999999875432256789999999999999999997 999
Q ss_pred CcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCcccee
Q 013981 232 STLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIM 311 (432)
Q Consensus 232 t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn~~ 311 (432)
|+|+||+|+++.||++||++.+++++++++++++||+++++++||.||+||+.+++|+++..+|+|.+.+++++++||++
T Consensus 294 t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~~~~~~~~r~~~ 373 (415)
T TIGR00801 294 TTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILIRNKLDNRRNRN 373 (415)
T ss_pred cchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876699999
Q ss_pred EEeehhhhhcch---hHHhhhcCcccccccCCccccccccCCCCccCCccchHHHHHHHhcchhHHHHHHHHHHHhc
Q 013981 312 IVGASLFLGLSI---PAYFQQYHPETSLILPSYFVPFAAASNGPVHTGSKQLDFAINALMSMNMVVTLLVAFILDNT 385 (432)
Q Consensus 312 Ivg~sl~~Glg~---p~~~~~~~p~~~~~lP~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~g~~vg~l~aiiLn~~ 385 (432)
++|+|+.+|+++ |++++++ | +++||+.+|+++|++||++
T Consensus 374 i~~~s~~~g~~~~~~p~~~~~~--------p---------------------------~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 374 IIAASVGLGLGVTGVPDIFGNF--------P---------------------------LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred hHHHHHHHHHHHhccHHHHhhC--------c---------------------------hhcccHHHHHHHHHHHhcC
Confidence 999999999997 5444432 1 6789999999999999974
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=6.3e-48 Score=396.73 Aligned_cols=289 Identities=32% Similarity=0.530 Sum_probs=224.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccc---c---ch-HHHHHHHHHHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCV---E---IS-IPQILLVLIFA 73 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~---~---i~-~~~~~l~~~~~ 73 (432)
+|+++|+++++|++++++++++.++|++|+|||.|+|.++++||+++.+.++++.+..+ + .. .........+.
T Consensus 89 ~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (389)
T PF00860_consen 89 LQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLVGDGKNLGLAVLTL 168 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---HHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccccccccccccccccccccc
Confidence 37899999999999999999999999999999999999999999999998887654332 1 11 11122222222
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchh-hhcc
Q 013981 74 LYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNA-WRTA 152 (432)
Q Consensus 74 l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~-v~~a 152 (432)
.....++.++++++|++++++|+++||++++.++ .+ |++ + +.++
T Consensus 169 ~~~~~~~~~~~~~~~~~ailigi~~g~i~~~~~g---~~-------------------------------~~~-~~~~~~ 213 (389)
T PF00860_consen 169 LFILLLSLFLKGFLRKGAILIGIIAGWIVAAILG---VV-------------------------------DFS-PSVSSA 213 (389)
T ss_dssp HHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHH---HT-------------------------------TSS-H-HHHS
T ss_pred hhhhhhhhhhhhhcccccchhhhhhhhhhhhccc---cc-------------------------------ccC-cccccc
Confidence 2333457788999999999999999999999995 22 333 3 6789
Q ss_pred cccccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCC
Q 013981 153 AWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSS 232 (432)
Q Consensus 153 pw~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t 232 (432)
||+++|++++|+.|+||+..+++++.+++++++|++||+.++++..+++.+++++++|++.+||++++++|+||+ +|+|
T Consensus 214 ~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~-~~~t 292 (389)
T PF00860_consen 214 PWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGT-SPTT 292 (389)
T ss_dssp -SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT----EE
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcC-CCCc
Confidence 999999999999999999999999999999999999999999999986655578899999999999999999998 9999
Q ss_pred cccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCCCccceeE
Q 013981 233 TLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSASFRNIMI 312 (432)
Q Consensus 233 ~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~~~Rn~~I 312 (432)
+|+||+|+++.||++|||++..+++++++++++||+++++++||.||+||++++++|+++.+|+|+++++|++++||.++
T Consensus 293 ~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~~r~~~i 372 (389)
T PF00860_consen 293 TYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDSARNAFI 372 (389)
T ss_dssp E-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHH
T ss_pred cccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeehhhhhcchhH
Q 013981 313 VGASLFLGLSIPA 325 (432)
Q Consensus 313 vg~sl~~Glg~p~ 325 (432)
+++++.+|++++.
T Consensus 373 v~~~l~~g~~i~~ 385 (389)
T PF00860_consen 373 VGLSLPLGLSIAF 385 (389)
T ss_dssp HHHHHHHHHH---
T ss_pred HHHhHHHHHHHhc
Confidence 9999999999873
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=179.02 Aligned_cols=260 Identities=14% Similarity=0.197 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhH-------HHHHHHHHhhhhhhhcCCCCcc---ccchHHHHHHHHH
Q 013981 2 RELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVV-------APTVAAIGLAFFSYGFPQAGSC---VEISIPQILLVLI 71 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~-------G~vv~lIGlsl~~~g~~~~g~~---~~i~~~~~~l~~~ 71 (432)
|+++|+++++|+++++++++|+++|++|.+|.... |.++.+||+.-.+.-+.+.+.. .++..|...+.++
T Consensus 102 q~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~ 181 (436)
T COG2252 102 QVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNAGIVVANPATLVALGDFTSPGVLLAIL 181 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHH
Confidence 78999999999999999999999999999998774 4445555554333222111110 1122222222222
Q ss_pred HHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhc
Q 013981 72 FALYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRT 151 (432)
Q Consensus 72 ~~l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~ 151 (432)
-.+....+ ..+++ +.+++++++..+++++.++. ....+ + ....
T Consensus 182 G~~l~~~L--~~~~i--~Gaili~i~~~t~~g~~~g~---~~~~~---------------------------~---~~~~ 224 (436)
T COG2252 182 GLLLIIVL--VSRKI--KGAILIGILVTTILGIILGI---DVHFG---------------------------G---LVGA 224 (436)
T ss_pred HHHHHHHH--HHhhc--cHhhhHHHHHHHHHHHHhcc---ccccc---------------------------c---cccC
Confidence 11111111 11333 57899999999999999842 21110 0 0000
Q ss_pred ccccccccccccccc--cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCC--CccccccchhhhchHHHHhhhhCC
Q 013981 152 AAWVRIPYPLQWGIP--IFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPP--TPRIVSRGIGMEGFCSILAGLWGS 227 (432)
Q Consensus 152 apw~~~P~p~~~g~P--~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~--~~~~~~r~l~~dGl~~ilaglfGt 227 (432)
.|.. .|...+.+.. ...++.+...+...+++.+|++|+..++++..+..++ ..++.+|.+.+|++++++++++|+
T Consensus 225 ~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~Gt 303 (436)
T COG2252 225 PPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFGT 303 (436)
T ss_pred CCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcCC
Confidence 1100 0111111211 1223445567888999999999999999999884332 234789999999999999999998
Q ss_pred CCCCCcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhhccCC
Q 013981 228 GTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQYTQSA 305 (432)
Q Consensus 228 ~~~~t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~~~~~ 305 (432)
.++|+|.|+...++..|++....+..+.+|+..+.+.| +...+|..+.++++++ .|.+|.++++.+++.|+.
T Consensus 304 -S~~t~yIESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~AtapaLi~-vG~lM~~~v~~id~~d~~ 375 (436)
T COG2252 304 -STVTAYIESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPALII-VGALMLSSVKQIDWSDFT 375 (436)
T ss_pred -cchhhhhhcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHHHHH-HHHHHHhhhccCCchhhh
Confidence 99999999999999999999999999999998876666 9999999999999986 999999999988876653
No 10
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.7e-16 Score=170.01 Aligned_cols=250 Identities=17% Similarity=0.207 Sum_probs=172.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhh----h--hhcCCCCc------------cccchH
Q 013981 2 RELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFF----S--YGFPQAGS------------CVEISI 63 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~----~--~g~~~~g~------------~~~i~~ 63 (432)
+.+.-+.+++|++++++|++| .+++.+++|+.|+-.++..||+.++ + .|.+..+. ....+.
T Consensus 98 ~~~~~~tllaGv~~i~~G~lR-LG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l~~~~~~~~~ 176 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLR-LGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLLTINL 176 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHHhcccccH
Confidence 456678899999999999999 5999999996665555555565444 2 13332111 111222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhh-HHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccc
Q 013981 64 PQILLVLIFALYLRGISVFGHHLFRIYA-VPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCR 142 (432)
Q Consensus 64 ~~~~l~~~~~l~l~~~~~~~~~~~r~~a-iLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (432)
....+..+....+. ..+++.+++| .++++++++.+++.+... .+..| +
T Consensus 177 ~~~~lg~~~l~il~----~~~~~~~~~P~~liaiv~~t~i~~~~~~~--~~~~G---~---------------------- 225 (554)
T COG0659 177 ATLLLGLLTLAILL----FLPRLTPRIPSPLIALVLGTLIVWIFPLD--SLRYG---E---------------------- 225 (554)
T ss_pred HHHHHHHHHHHHHH----HccchhhhCCcHHHHHHHHHHHHHHhcCC--chhcc---c----------------------
Confidence 33333322222221 2244445555 899999999999988431 00000 0
Q ss_pred cccchhhhcccccccccccccccccccHHH----HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchH
Q 013981 143 TDVSNAWRTAAWVRIPYPLQWGIPIFHLRT----SLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFC 218 (432)
Q Consensus 143 ~d~s~~v~~apw~~~P~p~~~g~P~f~~~~----il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~ 218 (432)
+..+.....||+ +.|.++++. +...+.++++.++|++.+..+.++..+. +++-||++.++|++
T Consensus 226 -i~~~lp~~~~~~--------~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrELiaqGia 292 (554)
T COG0659 226 -IPGSLPSGLPHF--------RLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRELIAQGIA 292 (554)
T ss_pred -CcccCCcCCCcc--------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHhhHH
Confidence 000011223444 444555443 3445678999999999999998888763 34469999999999
Q ss_pred HHHhhhhCCCCCCCcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHHhH
Q 013981 219 SILAGLWGSGTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFM-WALIVAIGLS 297 (432)
Q Consensus 219 ~ilaglfGt~~~~t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvl-fg~i~~~Gi~ 297 (432)
|+.+|+||+ +|.|....+......+|.++|.+.++++++++++-+ .++.++..||.+++++++++. +.++....++
T Consensus 293 Ni~sglfgg-~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~--~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~ 369 (554)
T COG0659 293 NIASGLFGG-IPATGSISRSAINIKSGARTRLSGIIHAALLLLLLL--FLAPLVSYIPLAALAAVLILVGWGLLDWSLLK 369 (554)
T ss_pred HHHHHHhCC-ccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHHHHHhccHHHHH
Confidence 999999996 899998888888899999999999999999887766 678999999999999988653 7777777766
Q ss_pred hh
Q 013981 298 NL 299 (432)
Q Consensus 298 ~l 299 (432)
.+
T Consensus 370 ~~ 371 (554)
T COG0659 370 PL 371 (554)
T ss_pred HH
Confidence 64
No 11
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.69 E-value=4.8e-15 Score=159.76 Aligned_cols=252 Identities=13% Similarity=0.140 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhh----h--hhcCC--CCc------------cccc--
Q 013981 4 LQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFF----S--YGFPQ--AGS------------CVEI-- 61 (432)
Q Consensus 4 ~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~----~--~g~~~--~g~------------~~~i-- 61 (432)
+.-..+++|++++++|++| .+++.+++|..|+..++..+|+.++ + .|++. .+. ..+.
T Consensus 99 a~~l~~l~Gi~~~~~g~lr-lG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (563)
T TIGR00815 99 AFTLTLLAGIFQVILGLLR-LGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWAGLPNTHN 177 (563)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHhhhccc
Confidence 3467899999999999999 5999999996666656655565443 2 23332 111 0111
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhhcchh----h-hhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhcc
Q 013981 62 -SIPQILLVLIFALYLRGISVFGHHLF----R-IYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHA 135 (432)
Q Consensus 62 -~~~~~~l~~~~~l~l~~~~~~~~~~~----r-~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (432)
+.+.+.+..+....+.....+.+++- . ....++.+++++++++.+.. .+..
T Consensus 178 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~---~~~~-------------------- 234 (563)
T TIGR00815 178 WNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLH---KKQG-------------------- 234 (563)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHcc---CCCC--------------------
Confidence 33333333222222222222222221 1 13478888888887766521 0000
Q ss_pred ccccccccccchhhhcccccccccccccccccccHHHH----HHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccc
Q 013981 136 YTMKHCRTDVSNAWRTAAWVRIPYPLQWGIPIFHLRTS----LIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRG 211 (432)
Q Consensus 136 ~~~~~~~~d~s~~v~~apw~~~P~p~~~g~P~f~~~~i----l~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~ 211 (432)
.. .+++.| -.+| .++.|.+|+..+ ...+.+++++++|++....+.++..++ +.+.||+
T Consensus 235 -------~~---~~g~ip-~g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~d~n~E 296 (563)
T TIGR00815 235 -------VS---ILGHIP-SGLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KIDANQE 296 (563)
T ss_pred -------eE---EEeecC-CCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCcHH
Confidence 00 111111 0112 234455665443 344678999999999998888887553 2346999
Q ss_pred hhhhchHHHHhhhhCCCCCCCcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH-HHH
Q 013981 212 IGMEGFCSILAGLWGSGTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFM-WAL 290 (432)
Q Consensus 212 l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvl-fg~ 290 (432)
+.++|++|+++|+||+ +|.+.+..+..+...+|.++|.+.++++++++++.++ ++.++..+|.+++++++++. +.+
T Consensus 297 l~a~G~~N~~~~~fg~-~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~~~~~l 373 (563)
T TIGR00815 297 LVAQGIANIVGSFFSC-YPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIISAVRGL 373 (563)
T ss_pred HHHhhHHHHHHHHhCc-cCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHHHhcc
Confidence 9999999999999996 8999888888889999999999999999998777664 67899999999999988764 444
Q ss_pred HHHHHhHhhh
Q 013981 291 IVAIGLSNLQ 300 (432)
Q Consensus 291 i~~~Gi~~l~ 300 (432)
+....++.+.
T Consensus 374 ~~~~~~~~~~ 383 (563)
T TIGR00815 374 IDYKELYKLW 383 (563)
T ss_pred cCHHHHHHHH
Confidence 4344444443
No 12
>PRK11660 putative transporter; Provisional
Probab=99.62 E-value=5.3e-14 Score=151.89 Aligned_cols=263 Identities=13% Similarity=0.164 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHh----hhhhh--hcCCC--C-c-----------cccchH
Q 013981 4 LQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGL----AFFSY--GFPQA--G-S-----------CVEISI 63 (432)
Q Consensus 4 ~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGl----sl~~~--g~~~~--g-~-----------~~~i~~ 63 (432)
+..+.+++|++++++|++| .+++.+++|..|+..++..+|+ ++++. |++.. + + ..+++.
T Consensus 105 ~~~~~~l~Gii~~l~gllr-lG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~l~~~~~~l~~~~~ 183 (568)
T PRK11660 105 LLVATLMSGIILILMGLAR-LGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQALPTINW 183 (568)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhhccCCH
Confidence 4456899999999999999 5899999995554444444444 33221 33321 1 1 011223
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhcccc--cccc
Q 013981 64 PQILLVLIFALYLRGISVFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYT--MKHC 141 (432)
Q Consensus 64 ~~~~l~~~~~l~l~~~~~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 141 (432)
+...+.++....+..+..+.+ |....++.+++++++++.++..+. +.+ .++... .+. ....
T Consensus 184 ~~~~~~~~~l~lll~~~~~~~---~iP~~li~iiv~t~~~~~~~~~~~-~v~-----------~vg~~~--~~~~~~g~~ 246 (568)
T PRK11660 184 GDALIGIVTLGVLILWPRLKI---RLPGHLPALLAGTAVMGVLNLLGG-HVA-----------TIGSRF--HYVLADGSQ 246 (568)
T ss_pred HHHHHHHHHHHHHHHHHhhcc---cCchHHHHHHHHHHHHHHHhccCC-Cce-----------eecccc--ccccccccc
Confidence 333322222222222222222 223468888999998887743110 000 000000 000 0000
Q ss_pred ccccchhhhcccccccccccccccc-------cccHHHH----HHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCcccccc
Q 013981 142 RTDVSNAWRTAAWVRIPYPLQWGIP-------IFHLRTS----LIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSR 210 (432)
Q Consensus 142 ~~d~s~~v~~apw~~~P~p~~~g~P-------~f~~~~i----l~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r 210 (432)
..... ...|-+.+| |..| .++|..+ ...+.++++..+|++-...+.++..++ +.+.||
T Consensus 247 ~~~ip---~~~p~~~~p----~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~----~~d~n~ 315 (568)
T PRK11660 247 GNGIP---PLLPQFVLP----WNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT----KHSANS 315 (568)
T ss_pred ccCCC---CCCCCCCCC----ccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcH
Confidence 00000 011112222 1111 2355443 345677889999998777777666543 234799
Q ss_pred chhhhchHHHHhhhhCCCCCCCcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH-HH
Q 013981 211 GIGMEGFCSILAGLWGSGTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFM-WA 289 (432)
Q Consensus 211 ~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvl-fg 289 (432)
++.++|++|+++|+||+ +|.+++.....+...+|.++|.+.+++++++++.-+ .++.++..||.+++++++++. +.
T Consensus 316 EL~a~G~aNi~~~~fgg-~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll--~l~~ll~~iP~~vLa~ili~~~~~ 392 (568)
T PRK11660 316 ELVGQGLGNIVAPFFGG-ITATAAIARSAANVRAGATSPISAVIHALLVLLALL--VLAPLLSYLPLSAMAALLLMVAWN 392 (568)
T ss_pred HHHHHhHHHHHHHHhCc-ccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999996 899998777788889999999999999987765533 345699999999999988763 44
Q ss_pred HHHHHHhHh
Q 013981 290 LIVAIGLSN 298 (432)
Q Consensus 290 ~i~~~Gi~~ 298 (432)
++....+..
T Consensus 393 m~~~~~~~~ 401 (568)
T PRK11660 393 MSEAHKVVD 401 (568)
T ss_pred hhhHHHHHH
Confidence 444444433
No 13
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.62 E-value=5.9e-14 Score=143.85 Aligned_cols=237 Identities=21% Similarity=0.275 Sum_probs=163.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccccchHHHHHHHHHHHHHHHHHHh
Q 013981 2 RELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALYLRGISV 81 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~~i~~~~~~l~~~~~l~l~~~~~ 81 (432)
.|+.|+.+++|++.+++|++|+++|++|++|+.+.+.++..+.+.+.-..++... ..+.+.+.. +. ..+
T Consensus 104 ~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~-----~~pll~~~m-ll-----~~l 172 (395)
T TIGR00843 104 NEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALD-----GLFLICFSM-LL-----CWL 172 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHH-HH-----HHH
Confidence 5889999999999999999999999999999999999887776655322221111 123222221 11 223
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhccccccccccc
Q 013981 82 FGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIPYPL 161 (432)
Q Consensus 82 ~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~~P~p~ 161 (432)
..||+.+++++++++++|.++++.. |..+.+ + +. .+ +..|
T Consensus 173 ~~~r~~Pr~avl~aLlvG~iva~~~---G~~~~~----------------------------~----~~-~~-l~~p--- 212 (395)
T TIGR00843 173 ASKAFAPRYAMIAALICGIAFSFAL---GDMNPT----------------------------D----LD-FK-IALP--- 212 (395)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHh---cCCCcc----------------------------c----cc-cc-cccc---
Confidence 3577888999999999999999887 332211 0 10 11 2223
Q ss_pred ccccccccHHHHHHH-HHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchh
Q 013981 162 QWGIPIFHLRTSLIM-IIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHT 240 (432)
Q Consensus 162 ~~g~P~f~~~~il~~-~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~ 240 (432)
.|..|+||+...+.. ++.+++++....-.=.++.|..+++.| .|+-+.++|++|++++.||+ ++ -|.+.
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p----~~~~~~~tGl~sll~ApfGg-~~-----~nlaa 282 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP----AKPIIAAAGLAALFAAFAGG-IS-----IGIAA 282 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----chHHHHHHHHHHHHHhccCC-ch-----hhhhH
Confidence 566789988777655 566777765333233455666665432 48999999999999999996 74 34444
Q ss_pred hhhcccc--------chh--HHHHHHHHHHHHHHH-HHHHHHHHhcChhHHHH-HHHHHHHHHHHHHhHhh
Q 013981 241 ISITKVA--------SRR--AVQLGAVFMIVFSFV-GKVGAILASIPQALAAS-ILCFMWALIVAIGLSNL 299 (432)
Q Consensus 241 i~~Tgv~--------Sr~--v~~~a~~~lillgl~-pk~~alla~IP~~V~gg-~llvlfg~i~~~Gi~~l 299 (432)
|..+=|. +|| ..+.+|++.+++|++ +.+..+++.+|.+.+.+ +-+.+++.+..+=-+-+
T Consensus 283 itaAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l~~a~ 353 (395)
T TIGR00843 283 ITAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNIKIAL 353 (395)
T ss_pred HhHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433222 222 368899999999999 89999999999999988 44778888876644444
No 14
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.54 E-value=5.8e-13 Score=134.72 Aligned_cols=237 Identities=21% Similarity=0.328 Sum_probs=165.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccccchHHHHHHHHHHHHHHHHHH
Q 013981 1 MRELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALYLRGIS 80 (432)
Q Consensus 1 ~~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~~i~~~~~~l~~~~~l~l~~~~ 80 (432)
+.|+.|+.+++|++.+++|.+|+++|+.|.+|+.+...++..+ +++++++-+.+.. ..|.+....+. .|
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGv---Ll~f~l~~f~a~~--~~P~l~~~ml~-~~----- 155 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGV---LLPFGLAAFTALQ--ADPLLVGPMLA-VF----- 155 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHH--hHHHHHHHHHH-HH-----
Confidence 3689999999999999999999999999999988877766665 3333433222211 12333222221 12
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccccccccc
Q 013981 81 VFGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIPYP 160 (432)
Q Consensus 81 ~~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~~P~p 160 (432)
...|++.++++++..+++|.++++.. |..+ .. .+. . ++..|
T Consensus 156 l~~~r~~pr~av~~al~~g~~~a~~~---g~~~-------------------------------~~-~~~-~-~~~~p-- 196 (378)
T PF03594_consen 156 LLARRFSPRYAVLAALVAGVAVAALT---GQLH-------------------------------PS-ALQ-L-SLAHP-- 196 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHhc---CCCC-------------------------------cc-ccc-c-cccee--
Confidence 22477888999999999999988765 3222 11 011 1 22223
Q ss_pred cccccccccHHHHHHH-HHHHHHHHH-HhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccc
Q 013981 161 LQWGIPIFHLRTSLIM-IIVSLVASV-DSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENV 238 (432)
Q Consensus 161 ~~~g~P~f~~~~il~~-~~i~lv~~~-esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~ 238 (432)
.|-.|+||+..++.+ ++.+++++. |++-- .++-|..+++.| .|+-+...|+++++.+.||+ . +-|.
T Consensus 197 -~~~~P~Fs~~a~v~lalPL~ivtmasQnlpG-~aVL~a~GY~~p----~~~~~~~tGl~s~l~ApfGg-~-----~~nl 264 (378)
T PF03594_consen 197 -VFTTPEFSWSALVSLALPLFIVTMASQNLPG-IAVLRAAGYQPP----VNPLITVTGLASLLAAPFGG-H-----AVNL 264 (378)
T ss_pred -EEECCcccHHHHHHHHHHHHHHHHHhcchHH-HHHHHHcCCCCC----chHHHHHHHHHHHHHhhhch-h-----hhHH
Confidence 677899999999877 788888887 55444 455566555322 58899999999999999996 7 6677
Q ss_pred hhhhhccccc---------hhH-HHHHHHHHHHHHHHH-HHHHHHHhcChhHHHHH-HHHHHHHHHHHHhHhh
Q 013981 239 HTISITKVAS---------RRA-VQLGAVFMIVFSFVG-KVGAILASIPQALAASI-LCFMWALIVAIGLSNL 299 (432)
Q Consensus 239 G~i~~Tgv~S---------r~v-~~~a~~~lillgl~p-k~~alla~IP~~V~gg~-llvlfg~i~~~Gi~~l 299 (432)
+.|...-|.+ ||. .+.+|++.+++|++. .+.+++...|.+.+..+ -+.+++.+..+=-+-+
T Consensus 265 AaitaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~sl~~A~ 337 (378)
T PF03594_consen 265 AAITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGGSLQTAF 337 (378)
T ss_pred HHHHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666544443 433 788999999999996 77899999999999884 4777888765543333
No 15
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.48 E-value=1.8e-13 Score=134.39 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchhhhhccccchhHH
Q 013981 173 SLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTISITKVASRRAV 252 (432)
Q Consensus 173 il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~Tgv~Sr~v~ 252 (432)
+...+.+++++.+|++.+..+.++..++ +.+.||++.++|++|+++|+||+ +|.+.+..+..+...+|.+||.+.
T Consensus 150 ~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg-~p~~~s~srs~~~~~~Ga~t~~s~ 224 (280)
T PF00916_consen 150 LPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGG-MPGSGSFSRSAVNYRAGARTRLSG 224 (280)
T ss_pred chhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhcc-cccccccccchHHHhcCcceeehh
Confidence 4455778999999999998877766543 23479999999999999999996 899998888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHH-HHHHHHHHhHhhhhc
Q 013981 253 QLGAVFMIVFSFVGKVGAILASIPQALAASILCFM-WALIVAIGLSNLQYT 302 (432)
Q Consensus 253 ~~a~~~lillgl~pk~~alla~IP~~V~gg~llvl-fg~i~~~Gi~~l~~~ 302 (432)
++++++++++-+ .++.++..+|.+++++++++. +.++....++.+.+.
T Consensus 225 ~~~~~~~l~~l~--~~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~ 273 (280)
T PF00916_consen 225 LISALFVLLVLL--FLAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRV 273 (280)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC
Confidence 999998776555 456799999999999988764 777777777777653
No 16
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.42 E-value=3.5e-11 Score=119.85 Aligned_cols=237 Identities=22% Similarity=0.317 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhhhhhhhcCCCCccccchHHHHHHHHHHHHHHHHHHh
Q 013981 2 RELQGAIIVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLAFFSYGFPQAGSCVEISIPQILLVLIFALYLRGISV 81 (432)
Q Consensus 2 ~~~~Ga~ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGlsl~~~g~~~~g~~~~i~~~~~~l~~~~~l~l~~~~~ 81 (432)
.|+.|+.+++|.+.++.|.+|.++|+.+.+||.+...++..| +.+++++....... .+.+.+..++ .|+
T Consensus 103 ~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~--~p~l~lpmv~-~~l----- 171 (402)
T COG3135 103 AEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPT--QPLLVLPMVL-AYL----- 171 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCC--ChHHHHHHHH-HHH-----
Confidence 588999999999999999999999999999998877665554 44555543322111 1223322222 121
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhccccccccccc
Q 013981 82 FGHHLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIPYPL 161 (432)
Q Consensus 82 ~~~~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~~P~p~ 161 (432)
..|.+-++|+++..+++|..++... |..+. .+ ..+-...|
T Consensus 172 l~r~f~pr~aV~aalvvgv~va~~~---G~~~~----------------------------~~------~~~~~~~p--- 211 (402)
T COG3135 172 LARVFAPRYAVIAALVVGVLVAALL---GDLHT----------------------------AL------VALEISTP--- 211 (402)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHh---Ccccc----------------------------cc------cccccCcc---
Confidence 2266677899999999999999887 33221 01 11123335
Q ss_pred ccccccccHHHHHHH-HHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchh
Q 013981 162 QWGIPIFHLRTSLIM-IIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHT 240 (432)
Q Consensus 162 ~~g~P~f~~~~il~~-~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~ 240 (432)
.|-.|+|++.+++.+ ++.+++++..-=..-.|+-|..+++ ++ .+--+...|+.+++++.||+ . +.|.+.
T Consensus 212 ~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~-pp---~~pl~~~TGl~sll~ApfG~-~-----t~nLaA 281 (402)
T COG3135 212 TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQ-PP---PSPLIVATGLASLLSAPFGG-H-----TVNLAA 281 (402)
T ss_pred eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCC-CC---CchHHHHhHHHHHHhccccc-c-----eecHHH
Confidence 677899999999987 7889998884333335555665553 22 36678999999999999996 6 678877
Q ss_pred hhhccccch----------hHHHHHHHHHHHHHHHH-HHHHHHHhcChhHHHH-HHHHHHHHHHHHHhHhh
Q 013981 241 ISITKVASR----------RAVQLGAVFMIVFSFVG-KVGAILASIPQALAAS-ILCFMWALIVAIGLSNL 299 (432)
Q Consensus 241 i~~Tgv~Sr----------~v~~~a~~~lillgl~p-k~~alla~IP~~V~gg-~llvlfg~i~~~Gi~~l 299 (432)
|...-|.+. ++...++++.+++|+|. .+.+++..+|.+.+.. +.+.+.+.+..+-.+-+
T Consensus 282 ItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l~~A~ 352 (402)
T COG3135 282 ITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSLQAAL 352 (402)
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776666653 34789999999999996 8889999999998877 33666777655544433
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.2e-09 Score=119.82 Aligned_cols=256 Identities=18% Similarity=0.216 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHhcC-chhHHHHH---HHHHhhhhh--hhcCCC----Cc----------cccch
Q 013981 3 ELQGAIIVGSIFQSILGFTGLMSLFLRLIN-PVVVAPTV---AAIGLAFFS--YGFPQA----GS----------CVEIS 62 (432)
Q Consensus 3 ~~~Ga~ivaGl~~illg~~gl~~~l~~~fp-P~V~G~vv---~lIGlsl~~--~g~~~~----g~----------~~~i~ 62 (432)
.+.-..+++|++|+++|++| .+.+.+++| |++.|.+. +.|.+++++ .|++.. +. +.+..
T Consensus 167 va~~lt~l~Giiq~~mG~lr-LGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~ 245 (665)
T KOG0236|consen 167 VATTLTFLTGIIQLILGLLR-LGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLP 245 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccc
Confidence 34556899999999999999 599999999 66666552 224445553 244321 10 00000
Q ss_pred --HHHHHHHHHHHHHHHHHH-hhh---cchh--hhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhc
Q 013981 63 --IPQILLVLIFALYLRGIS-VFG---HHLF--RIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKH 134 (432)
Q Consensus 63 --~~~~~l~~~~~l~l~~~~-~~~---~~~~--r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 134 (432)
+..+.+......++...+ ... |++. ....-++.+++++++++.+...+.+. +.
T Consensus 246 ~~~~~~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~--------~~----------- 306 (665)
T KOG0236|consen 246 KTLATLVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYG--------PI----------- 306 (665)
T ss_pred ccchhhhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccC--------Ce-----------
Confidence 111222222211112122 111 1111 22238899999999998874311000 00
Q ss_pred ccccccccc-ccchhhhcccccccccccccccccccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchh
Q 013981 135 AYTMKHCRT-DVSNAWRTAAWVRIPYPLQWGIPIFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIG 213 (432)
Q Consensus 135 ~~~~~~~~~-d~s~~v~~apw~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~ 213 (432)
.. +. ....|...+|. +.+....+...+.+++++.+|+++--.+.++..+++ .| -||++.
T Consensus 307 -------~~~~i---~~g~~~~~lp~------~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~-vd---~nqELi 366 (665)
T KOG0236|consen 307 -------IVGEI---PRGFPPPSLPP------LSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYK-VD---SNQELI 366 (665)
T ss_pred -------eeccC---CCCCCCCCCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe-eC---CChHHH
Confidence 01 11 11223333331 112223456688899999999988877777765432 22 589999
Q ss_pred hhchHHHHhhhhCCCCCCCcccccchhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH-HHH-HH
Q 013981 214 MEGFCSILAGLWGSGTGSSTLTENVHTISITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCF-MWA-LI 291 (432)
Q Consensus 214 ~dGl~~ilaglfGt~~~~t~~s~n~G~i~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llv-lfg-~i 291 (432)
+-|++|+++++|++ .|.|..-.+..+...+|++++...+..++..++.-+ .++.++..+|.++++++.+. +.+ ++
T Consensus 367 AlG~~Ni~sSff~~-~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~--~l~p~f~~iP~~vLaaIIi~a~~~~l~ 443 (665)
T KOG0236|consen 367 ALGISNILSSFFGC-YPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALL--FLGPLFYYIPKCVLAAIIISALIGMLI 443 (665)
T ss_pred HHHHHHHhhhhhce-EcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHhhHHHh
Confidence 99999999999998 999999999999999999999998888877665544 56789999999999997765 355 55
Q ss_pred HHHHhHhhhh
Q 013981 292 VAIGLSNLQY 301 (432)
Q Consensus 292 ~~~Gi~~l~~ 301 (432)
-...+..+++
T Consensus 444 ~~~~~~~lwr 453 (665)
T KOG0236|consen 444 QLEDLKPLWR 453 (665)
T ss_pred hhhhhhhhee
Confidence 5666666654
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=96.67 E-value=0.26 Score=56.22 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCC---CCccccccchhhhchHHHHhhhhCCCCCCCc-ccccc-hhh----
Q 013981 171 RTSLIMIIVSLVASVDSVGTYHTASLLVNSKP---PTPRIVSRGIGMEGFCSILAGLWGSGTGSST-LTENV-HTI---- 241 (432)
Q Consensus 171 ~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~---~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~-~s~n~-G~i---- 241 (432)
.++++.+.+++.-++|+==+. .++++++ +.....+=-+..-|+-+.++|++|- +..++ ..++. -+-
T Consensus 656 ~A~iPAlll~ILiFmD~nIts----~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGL-Pw~~aatv~S~~Hv~sL~v 730 (900)
T TIGR00834 656 AAALPALLVFILIFMEQQITT----LIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGL-PWLSAATVRSVTHANALTV 730 (900)
T ss_pred HHHHHHHHHHHHHHHHhhhHH----HHhcCccccCCCCcccchHHHHHHHHHHHHHhcCC-CcccccCCcChhhHhHHee
Confidence 344555556666667653332 2222211 1111234467788999999999995 53332 11111 001
Q ss_pred -----------hhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhh
Q 013981 242 -----------SITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQY 301 (432)
Q Consensus 242 -----------~~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~ 301 (432)
...+|...|+.-+...+|+.+++ .+.+++..||.||+.|+.++ .|.-...|.+..++
T Consensus 731 ~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv--~~~PvL~~IP~aVL~GvFlY-MGv~SL~GnQ~~~R 798 (900)
T TIGR00834 731 MSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI--LMEPILKRIPLAVLFGIFLY-MGVTSLSGIQLFDR 798 (900)
T ss_pred eeeccCCCCCCccceeEeeehHHHHHHHHHHHHH--HHHHHHhhccHHHHHHHHHH-HHHhhcccCHHHHH
Confidence 12234443443333223433333 35569999999999999987 56666666665553
No 19
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=96.36 E-value=0.32 Score=49.97 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcCchhHHHHHHHHHhh----hhhhhcCCCCccccchHHHHHHHHHHHHHHHHHHhhhc
Q 013981 9 IVGSIFQSILGFTGLMSLFLRLINPVVVAPTVAAIGLA----FFSYGFPQAGSCVEISIPQILLVLIFALYLRGISVFGH 84 (432)
Q Consensus 9 ivaGl~~illg~~gl~~~l~~~fpP~V~G~vv~lIGls----l~~~g~~~~g~~~~i~~~~~~l~~~~~l~l~~~~~~~~ 84 (432)
++-|++-+++++++.-+|+.++-..-|.|..+...|.+ ++.--..-+.+...-....+++...+.+|.. +..+.|
T Consensus 149 ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~-L~k~~K 227 (492)
T PF11840_consen 149 ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAY-LAKIEK 227 (492)
T ss_pred HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHH-HHHhcc
Confidence 34577777888887778888888888776555444431 1110000011100001222333333334432 344456
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCccCCCCCCCCCCCccchhhhhhccccccccccccchhhhcccccccccccccc
Q 013981 85 HLFRIYAVPLSVMIIWAYAFFLTAGGAYNYKGCSPDIPSSNILSDACIKHAYTMKHCRTDVSNAWRTAAWVRIPYPLQWG 164 (432)
Q Consensus 85 ~~~r~~aiLigi~vG~~~a~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~v~~apw~~~P~p~~~g 164 (432)
|+ .++-++-+++-++++.++.. .++.. .|.. .++ +..=|..=-+-++.|
T Consensus 228 rW---LaIPl~~~~a~~~a~~lGa~--f~f~t-~pgl---------------------p~l----nP~YWWge~tGw~Lg 276 (492)
T PF11840_consen 228 RW---LAIPLCSILAGVLAFALGAP--FEFTT-EPGL---------------------PNL----NPMYWWGEETGWQLG 276 (492)
T ss_pred ch---hhhhHHHHHHHHHHHHcCCC--ceeec-CCCC---------------------CCC----CCcccccCCcccccC
Confidence 55 66777777777788887431 22210 0010 111 112233222345667
Q ss_pred cccccHHHHHHHHHHHHHHH----HHhHHHHHHHHhhhcCCCC---CccccccchhhhchHHHHhhhhCCCCCCCccccc
Q 013981 165 IPIFHLRTSLIMIIVSLVAS----VDSVGTYHTASLLVNSKPP---TPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTEN 237 (432)
Q Consensus 165 ~P~f~~~~il~~~~i~lv~~----~esiG~~~a~~~~~~~~~~---~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n 237 (432)
+|.+ ..++..+++++.+. -|.+|+ ...++.. +++. ..-+++.......+=+++++.+|+ ++.++|=.
T Consensus 277 lP~~--~hfiav~PFAiLAVaMWSpDflgh-rvFqeln-ypk~~~kvlMnvDDTm~~~siRQ~vGs~lGG--gN~~SsWg 350 (492)
T PF11840_consen 277 LPTL--EHFIAVLPFAILAVAMWSPDFLGH-RVFQELN-YPKETKKVLMNVDDTMTMCSIRQIVGSILGG--GNIASSWG 350 (492)
T ss_pred CCcH--HHHHHhccHHHHHHHHhCchHHHH-HHHHHhc-CchhhcceeecccchhHHHHHHHHHhhcccC--Ccccccch
Confidence 7764 33444444433332 367777 3333332 2221 222478899999999999999996 45544433
Q ss_pred chhhh--hccccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHHHHHhHhhhh
Q 013981 238 VHTIS--ITKVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCF-MWALIVAIGLSNLQY 301 (432)
Q Consensus 238 ~G~i~--~Tgv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llv-lfg~i~~~Gi~~l~~ 301 (432)
.=.|- +.|+-=+--.+..++++++.++..-=..+. +=.||+--++++ +|--+.-.|+++.++
T Consensus 351 TymIPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdla--vw~Pvl~vALlvGVflPLleAGmqm~r~ 415 (492)
T PF11840_consen 351 TYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLA--VWPPVLRVALLVGVFLPLLEAGMQMTRK 415 (492)
T ss_pred hhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhh--hcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32232 334444445677888888887765222221 224777777766 577778899998874
No 20
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=95.86 E-value=1.1 Score=50.59 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=52.4
Q ss_pred cccchhhhchHHHHhhhhCCCCCC-Ccccccchhhh-h---------------ccccchhHHHHHHHHHHHHHHHHHHHH
Q 013981 208 VSRGIGMEGFCSILAGLWGSGTGS-STLTENVHTIS-I---------------TKVASRRAVQLGAVFMIVFSFVGKVGA 270 (432)
Q Consensus 208 ~~r~l~~dGl~~ilaglfGt~~~~-t~~s~n~G~i~-~---------------Tgv~Sr~v~~~a~~~lillgl~pk~~a 270 (432)
..=-+..-|+-+.++|+||- +.. .+..++.-=+. + -+|...|+.-+-..+|+ |++-....
T Consensus 668 yH~DLlllgil~~icsllGL-Pw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llv--gls~~~~p 744 (876)
T KOG1172|consen 668 YHLDLLLLGILTLICSLLGL-PWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLV--GLSVLLLP 744 (876)
T ss_pred hhHHHHHHHHHHHHHHhcCC-CccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHH--HHHHHHHH
Confidence 34468889999999999996 543 33444432111 1 12333333222222222 33335667
Q ss_pred HHHhcChhHHHHHHHHHHHHHHHHHhHhhhh
Q 013981 271 ILASIPQALAASILCFMWALIVAIGLSNLQY 301 (432)
Q Consensus 271 lla~IP~~V~gg~llvlfg~i~~~Gi~~l~~ 301 (432)
++..||.||+.|+.++ .|.=...|.|..++
T Consensus 745 vL~~IP~~VL~GvFlY-Mgv~SL~Gnqf~eR 774 (876)
T KOG1172|consen 745 VLKLIPMPVLYGVFLY-MGVSSLPGNQFFER 774 (876)
T ss_pred HHhhccHHHHHHHHHH-HhhccCCccHHHHH
Confidence 9999999999998886 34444455554443
No 21
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=88.41 E-value=6.1 Score=43.20 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchhhh--hcccc---
Q 013981 173 SLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTIS--ITKVA--- 247 (432)
Q Consensus 173 il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~--~Tgv~--- 247 (432)
++..+.++.+..=|+++- +..++- + ...|+.+.=++.++.++||+ .+.-.+..-.+... .+-++
T Consensus 25 l~AGltva~valP~ama~----a~~aGv---~---p~~GLyas~i~~~v~alfGg-s~~~i~GPt~a~~~v~a~~i~~~~ 93 (554)
T COG0659 25 LLAGLTVAAVALPLAMAF----AIAAGV---P---PEAGLYASIVAGIIYALFGG-SRGLISGPTGAFAVVLAAVIASLV 93 (554)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHcCC---C---HHHHHHHHHHHHHHHHHHcC-CccceeccchhhHHHHHHHHHHHH
Confidence 556677777777777765 334442 2 24799999999999999996 77665554443222 22333
Q ss_pred c------hhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhh
Q 013981 248 S------RRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQ 300 (432)
Q Consensus 248 S------r~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~ 300 (432)
. -.....+|++.+++|++ |++.++..||.||+-|.+.-+--.|+...+..+.
T Consensus 94 ~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~ 151 (554)
T COG0659 94 ETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLL 151 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 22367889999999998 9999999999999988765544445555555444
No 22
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=82.98 E-value=15 Score=40.19 Aligned_cols=116 Identities=10% Similarity=0.151 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchhhhhc-------c
Q 013981 173 SLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTISIT-------K 245 (432)
Q Consensus 173 il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~T-------g 245 (432)
+++-+.++++..-|+++- +..++- + ..-|+.+.-+..++.++||+ .+............++ +
T Consensus 18 i~aGltv~~~~iP~~~ay----A~lagl---p---p~~GLysa~~~~iv~alfGs-s~~~i~Gp~a~~sl~~~~~v~~~~ 86 (563)
T TIGR00815 18 LMAGLTVGILLIPQAMAY----AILAGL---S---PIYGLYTSFVPPFIYALFGT-SRDIAIGPVAVMSLLLGSVIARVG 86 (563)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCC---C---chhhhHHHHHHHHHhheecC-CCcccCCHHHHHHHHHHHHHHHhc
Confidence 456667777777777765 344442 1 14579999999999999997 7766655554322211 1
Q ss_pred ccch----------hHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhh
Q 013981 246 VASR----------RAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNLQ 300 (432)
Q Consensus 246 v~Sr----------~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~ 300 (432)
.... .....+|++++++|++ |++.+...||.||+.|.+.-+--.++.+-++.+.
T Consensus 87 ~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~ 150 (563)
T TIGR00815 87 LQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLL 150 (563)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 4568889999999998 9999999999999999776655555555555543
No 23
>PRK11660 putative transporter; Provisional
Probab=77.89 E-value=26 Score=38.35 Aligned_cols=115 Identities=14% Similarity=0.228 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchhhhhcc--c--cc
Q 013981 173 SLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTISITK--V--AS 248 (432)
Q Consensus 173 il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~Tg--v--~S 248 (432)
+++-+.++++..-|+++- +..++. ++ .-|+.+.-++.++.++||+ .+............+.. . ..
T Consensus 33 ~iAGltv~~~~iPq~may----A~lag~--pp----~~GLysa~~~~~vyal~Gs-s~~~~~Gp~a~~~~~~~~~~~~~~ 101 (568)
T PRK11660 33 LIAGITVGIIAIPLAMAL----AIASGV--PP----QYGLYTAAVAGIVIALTGG-SRFSVSGPTAAFVVILYPVSQQFG 101 (568)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHcCC--Ch----HHHHHHHHHHHHHHHHhcC-CCCcccChhHHHHHHHHHHHHHhh
Confidence 556677777777777765 345542 22 2389999999999999997 76665554433222110 1 11
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhh
Q 013981 249 ----RRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIVAIGLSNL 299 (432)
Q Consensus 249 ----r~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l 299 (432)
-.....+|++.+++|++ +++.+...||.||+.|.+.-+--.++.+.++.+
T Consensus 102 ~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~ 155 (568)
T PRK11660 102 LAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDF 155 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12367888999999988 799999999999999977554334444444444
No 24
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=68.36 E-value=1.7 Score=46.88 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=0.9
Q ss_pred ccchhhhchHHHHhhhhCCCCCCCc-ccccch-hhh---------------hccccchhHHHHHHHHHHHHHHHHHHHHH
Q 013981 209 SRGIGMEGFCSILAGLWGSGTGSST-LTENVH-TIS---------------ITKVASRRAVQLGAVFMIVFSFVGKVGAI 271 (432)
Q Consensus 209 ~r~l~~dGl~~ilaglfGt~~~~t~-~s~n~G-~i~---------------~Tgv~Sr~v~~~a~~~lillgl~pk~~al 271 (432)
+=-+..-|+-+.++|++|- +...+ ..++.- +-+ ..+|+..|+.-....++ .|+...+..+
T Consensus 374 H~DL~llgi~~~v~sllGL-Pw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~L--igls~~l~pv 450 (510)
T PF00955_consen 374 HLDLFLLGIITLVCSLLGL-PWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHLL--IGLSLFLLPV 450 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHcCC-CCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEecccHHHHHHH--HHHHHHHHHH
Confidence 4467888999999999996 54443 323221 111 12333333322222233 3444467779
Q ss_pred HHhcChhHHHHHHHHHHHHHHHHHhHhhh
Q 013981 272 LASIPQALAASILCFMWALIVAIGLSNLQ 300 (432)
Q Consensus 272 la~IP~~V~gg~llvlfg~i~~~Gi~~l~ 300 (432)
+..||.||+.|+.++ .|.-...|.|.++
T Consensus 451 L~~IP~~VL~GvFly-mG~~sL~gnq~~~ 478 (510)
T PF00955_consen 451 LKLIPMPVLYGVFLY-MGVTSLSGNQFFE 478 (510)
T ss_dssp ---------------------------TT
T ss_pred HHHhhHHHHHHHHHh-heeeeecCccHHH
Confidence 999999999999987 4455555555444
No 25
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=54.61 E-value=61 Score=33.81 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchh----hhchHHHHhhhhCCCCCCCc-cccc-chhh
Q 013981 168 FHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIG----MEGFCSILAGLWGSGTGSST-LTEN-VHTI 241 (432)
Q Consensus 168 f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~----~dGl~~ilaglfGt~~~~t~-~s~n-~G~i 241 (432)
++++.+..-+...++....+..-+...++..+. ++++....+. +.|+.++.-++.== .|... .|.= +.++
T Consensus 3 ~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~---s~~q~~SWl~al~~~~Gl~~i~lSl~yR-~Pi~~AWStPGaAlL 78 (378)
T PF03594_consen 3 FSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGA---SPAQIASWLFALYLGMGLTSILLSLRYR-MPIVTAWSTPGAALL 78 (378)
T ss_pred CcHHHHHHHHHHHHhhccchHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhhcchHHHHHH
Confidence 445555555666666655555555555554442 3333444433 34444544443321 23322 2211 1111
Q ss_pred hhc-cccc----hhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 013981 242 SIT-KVAS----RRAVQLGAVFMIVFSFVGKVGAILASIPQALAASIL 284 (432)
Q Consensus 242 ~~T-gv~S----r~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~l 284 (432)
..+ .-.+ --+++.++++++++|+.+.|..++..||.++..+++
T Consensus 79 ~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AML 126 (378)
T PF03594_consen 79 ATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAML 126 (378)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 111 0011 113788999999999999999999999999988765
No 26
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=53.70 E-value=82 Score=33.11 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCcccccc----chhhhchHHHHhhhhCCCCCCC-cccccch--hhh-
Q 013981 171 RTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSR----GIGMEGFCSILAGLWGSGTGSS-TLTENVH--TIS- 242 (432)
Q Consensus 171 ~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r----~l~~dGl~~ilaglfGt~~~~t-~~s~n~G--~i~- 242 (432)
+.+..-+...++....+.--+...++..+. ++.+... -..+.|+++++=++.== .|.. ..| -.| ++.
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~---s~aq~~swl~a~~~~~Gl~ti~lS~~~r-~Pi~~awS-tPGaAll~~ 96 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGA---STAMIIGWITAIGIAAAVSGIFLSIRFK-TPVLTAWS-APGAALLVT 96 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeecC-chHHHHHHH
Confidence 345555666666666666666555555543 2333333 44555666665554432 3433 333 222 221
Q ss_pred -hccccchh---HHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 013981 243 -ITKVASRR---AVQLGAVFMIVFSFVGKVGAILASIPQALAASIL 284 (432)
Q Consensus 243 -~Tgv~Sr~---v~~~a~~~lillgl~pk~~alla~IP~~V~gg~l 284 (432)
..+..=.. +++.++++++++|+.+.+..+...||.++.++++
T Consensus 97 ~~~~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 97 GFPGISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 11222122 4788889999999999999999999999999977
No 27
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=37.19 E-value=1e+02 Score=31.88 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=56.7
Q ss_pred cccccchhhhchHHHHhhh-hCCCCCCCcccccchhh---hhcc-----ccchh----HHHHHHHHHHHHHHHHHHHHHH
Q 013981 206 RIVSRGIGMEGFCSILAGL-WGSGTGSSTLTENVHTI---SITK-----VASRR----AVQLGAVFMIVFSFVGKVGAIL 272 (432)
Q Consensus 206 ~~~~r~l~~dGl~~ilagl-fGt~~~~t~~s~n~G~i---~~Tg-----v~Sr~----v~~~a~~~lillgl~pk~~all 272 (432)
..++..+.+.|++|++=++ +|...|...-..=+.+. ...+ ..+.. ...+++++.++++++.....+.
T Consensus 37 ~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~ 116 (389)
T PF00860_consen 37 ALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLR 116 (389)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHH
Confidence 3467788888888888888 66644443322111111 1112 11111 2577788889999998878899
Q ss_pred HhcChhHHHHHHHHHHHHHHHHHhHhhhhc
Q 013981 273 ASIPQALAASILCFMWALIVAIGLSNLQYT 302 (432)
Q Consensus 273 a~IP~~V~gg~llvlfg~i~~~Gi~~l~~~ 302 (432)
..+|..|.|++.+.+--.+...++++....
T Consensus 117 ~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~ 146 (389)
T PF00860_consen 117 RLFPPVVKGAVVLLIGLSLAPIGLKNAGGI 146 (389)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhChhheEeeEeeehhhhhhhHhhccccc
Confidence 999999999988776556667788877643
No 28
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.88 E-value=1.4e+02 Score=27.03 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=34.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH
Q 013981 245 KVASRRAVQLGAVFMIVFSFVGKVGAILASIPQALAASILCFMWALIV 292 (432)
Q Consensus 245 gv~Sr~v~~~a~~~lillgl~pk~~alla~IP~~V~gg~llvlfg~i~ 292 (432)
+-.+|.+.++++++.+++|+|. +++.=|....++++-++-|.+.
T Consensus 29 r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfiv 72 (175)
T KOG4085|consen 29 RWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIV 72 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHH
Confidence 5556888999999999988776 7777888888888766655554
No 29
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=25.40 E-value=8.4e+02 Score=28.61 Aligned_cols=123 Identities=6% Similarity=-0.043 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCccccccchhhhchHHHHhhhhCCCCCCCcccccchhhhh---
Q 013981 167 IFHLRTSLIMIIVSLVASVDSVGTYHTASLLVNSKPPTPRIVSRGIGMEGFCSILAGLWGSGTGSSTLTENVHTISI--- 243 (432)
Q Consensus 167 ~f~~~~il~~~~i~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~l~~dGl~~ilaglfGt~~~~t~~s~n~G~i~~--- 243 (432)
.|+...+.+.+.+++++..-++.=-.-+.+.++. .. ..+..+.+++++.++=++||+ -|.+--...-=+...
T Consensus 366 a~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g---~~-gv~E~Llstai~Giifslf~G-QPL~IlG~TGPilvF~~~ 440 (900)
T TIGR00834 366 ALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRN---MM-GVSELLISTAVQGVLFALLAA-QPLLVVGFSGPLLVFEEA 440 (900)
T ss_pred hhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhCC---cc-hHHHHHHHHHHHHHHHhhhcC-CceEEecCcccHHHHHHH
Confidence 3667777777778887777655332233344332 11 257899999999999999995 876542211101100
Q ss_pred ----cccc-------chhHHHHHHHHHHHHHHHH--HHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 013981 244 ----TKVA-------SRRAVQLGAVFMIVFSFVG--KVGAILASIPQALAASILCFMWALIVAI 294 (432)
Q Consensus 244 ----Tgv~-------Sr~v~~~a~~~lillgl~p--k~~alla~IP~~V~gg~llvlfg~i~~~ 294 (432)
.+-. --|+.+++++++++++.+- .+...++-...-+.+....++|-.=+..
T Consensus 441 ly~~c~~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~ 504 (900)
T TIGR00834 441 FFSFCESNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFS 504 (900)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 0000 1356788888888888775 5555667777777776555444433333
No 30
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=21.96 E-value=5.2e+02 Score=25.64 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHhHhhhh
Q 013981 265 VGKVGAILASIPQALAASILCFMWALIVAIGLSNLQY 301 (432)
Q Consensus 265 ~pk~~alla~IP~~V~gg~llvlfg~i~~~Gi~~l~~ 301 (432)
.+.+.+++..||.-++.|.... -+++=..|+.++-+
T Consensus 163 ~~~v~~il~~iP~~v~~Gl~va-ggmLPAvGfAmLl~ 198 (265)
T TIGR00822 163 QSAVQAMLKAIPEVVTHGLQIA-GGIIVVVGYAMVLR 198 (265)
T ss_pred HHHHHHHHHHCHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 3577899999999999887764 78888888888764
No 31
>PRK10711 hypothetical protein; Provisional
Probab=21.93 E-value=2.2e+02 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHH-hcCchhHHHHHHHHHhhhhh
Q 013981 24 MSLFLR-LINPVVVAPTVAAIGLAFFS 49 (432)
Q Consensus 24 ~~~l~~-~fpP~V~G~vv~lIGlsl~~ 49 (432)
.+|.++ ++.|+++.+++...-+.+..
T Consensus 23 ~~k~~~~~l~Pll~s~~~ii~~L~~~~ 49 (231)
T PRK10711 23 AARFKFPLLNPLLVAMVVIIPFLLLTG 49 (231)
T ss_pred HHHcCCCcccHHHHHHHHHHHHHHHhC
Confidence 344433 46688887766555444443
Done!